BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62] (445 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040343|gb|ACT57139.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str. psy62] Length = 445 Score = 332 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 445/445 (100%), Positives = 445/445 (100%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL Sbjct: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF Sbjct: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL Sbjct: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL Sbjct: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD Sbjct: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI Sbjct: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML Sbjct: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 Query: 421 EKIDGVSSGMDGFFAVALRRLIQPK 445 EKIDGVSSGMDGFFAVALRRLIQPK Sbjct: 421 EKIDGVSSGMDGFFAVALRRLIQPK 445 >gi|209551488|ref|YP_002283405.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537244|gb|ACI57179.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 462 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 227/441 (51%), Positives = 302/441 (68%), Gaps = 4/441 (0%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR ++ +L V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR LP Sbjct: 26 KPGLQARAAAAKILGAVVERKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLP 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RIDA + +L S LP +LQ +L + VAQILYLDV D++ VDLAVEQA +D NR FA Sbjct: 86 RIDAAISSLLESPLPEGARALQHVLAIGVAQILYLDVPDHSAVDLAVEQANQDPRNRRFA 145 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 KLVN++LRR+ REK E+L I ++ +P WF RLE YG++ LAIS++ + P IDLT Sbjct: 146 KLVNAVLRRLGREKDEVLGEIDKVAPMPAWFIARLEKAYGRDAALAISESQLQPAAIDLT 205 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E WA +LN V+LPTGG+RL I SL GF +G WWVQDA+ASIP +LFG L+ Sbjct: 206 VKSDAEGWAKRLNGVVLPTGGVRLAAFDGGIPSLEGFDDGAWWVQDAAASIPAKLFGDLS 265 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE I D + Sbjct: 266 GKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRRLRSNLDRLSLKAETI-AADLTTF 324 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P + FDA+L+DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL ++ +KP G + Sbjct: 325 EPAERFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIGRLAALQERLLRHALTLLKPDGTL 384 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD + EEVV +VL + +E V +++ W ++ A ++P G R P ML+ Sbjct: 385 VFSNCSLDPTEGEEVVARVLADT-DGIERVRIDAGDWPGLEAA--ITPLGEFRTLPTMLK 441 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 DG++SG+DGF+A LRR+ Sbjct: 442 MPDGIASGLDGFYAAMLRRVA 462 >gi|254502120|ref|ZP_05114271.1| ribosomal RNA small subunit methyltransferase B [Labrenzia alexandrii DFL-11] gi|222438191|gb|EEE44870.1| ribosomal RNA small subunit methyltransferase B [Labrenzia alexandrii DFL-11] Length = 468 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 179/439 (40%), Positives = 261/439 (59%), Gaps = 5/439 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G AR V++ +L V+ K+ L LD+ G S FR L+ D+ LVRAI LR Sbjct: 32 KPGFAARKVAADILGNVVHKKRPLDGELDMASGHSGFRALAANDRALVRAIAGAALRHRG 91 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I +L +L +P K + +L V++AQ+ +LD+ D A V LAV+ A D+ R + Sbjct: 92 EITEILGRLLDRDIPEKTGRVLDILHVAIAQMQFLDIPDRAAVSLAVDHASMDRRARPYK 151 Query: 122 KLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN +LRR+ RE+ E+ A P+W E + YG+E AI+ A +DL Sbjct: 152 GLVNGVLRRLGRERDEITSDLDAPRLNTPDWLWESWQAAYGEEGARAIAKAHEREAALDL 211 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D WA KL+ V++ G +RL ++ +L GF +G WWVQDA+AS+P +L G + Sbjct: 212 TVKADAAAWAEKLDGVVVGAGSVRL-TKKGAVDALEGFEDGAWWVQDAAASLPAKLLGDV 270 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + V DLCAAPGGKTAQL GA++TA+D+SK RL++L N+ RL L + D + Sbjct: 271 SGKQVADLCAAPGGKTAQLAAVGAEITAIDISKARLKRLAENMTRLGLS-VTTVAADLRE 329 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P+ LFDA+L+DAPCS+TGTIRRHPDV W + DI K + Q LL + +S++KPGG+ Sbjct: 330 FEPEVLFDAILLDAPCSATGTIRRHPDVPWIKKPYDIEKLSEIQTALLDRVMSWLKPGGV 389 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL++ + E + L + V LVP++++ +A +++PEG++R PD Sbjct: 390 LVYCTCSLERAEGEGQAEAFLERNKDRVSLVPVDASEIGG--LAESVTPEGYLRCRPDQS 447 Query: 421 EKIDGVSSGMDGFFAVALR 439 + GMDGFFA R Sbjct: 448 AGPETGLFGMDGFFAARFR 466 >gi|118591346|ref|ZP_01548744.1| SUN protein [Stappia aggregata IAM 12614] gi|118436018|gb|EAV42661.1| SUN protein [Stappia aggregata IAM 12614] Length = 458 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 180/440 (40%), Positives = 260/440 (59%), Gaps = 5/440 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G AR V++ +L V+ K+ L LD G S FR L+ D+ LVRAI+ LR Sbjct: 22 KPGFAARKVAADILGNVVHKKRPLDGELDTASGHSGFRALAANDRSLVRAIIGAALRHRG 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I +LD +L +P K + +L V++AQ+L+LD+ D A V LAV+ A D+ R + Sbjct: 82 EIAEILDRLLDRPIPEKTGRVLDILHVAIAQMLFLDIPDRAAVSLAVDHAGLDRRARPYK 141 Query: 122 KLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN +LRR+ RE+ E+ A + P+W E + YG E I+ A + +DL Sbjct: 142 GLVNGVLRRLGRERDEVTADLDAAVLNTPDWLMESWQVAYGPETAREIARAHETEAALDL 201 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +VK D E WA KL+ ++ G +RL ++ +L G+ +G WWVQDA+A++P +L G + Sbjct: 202 SVKADPEGWAQKLDGQIVGAGSVRLVR-KGAVDALEGYGDGQWWVQDAAAALPARLLGDV 260 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 L V DLCAAPGGKTAQL +GA VTA+D+SK RL++L N+ RL L + + D Sbjct: 261 KGLRVADLCAAPGGKTAQLAAAGASVTAVDISKARLKRLEENMTRLGLS-VETVAADLRA 319 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P++ FDA+L+DAPCS+TGTIRRHPDV W + DI K Q +LL + + +VKPGG+ Sbjct: 320 FEPEEPFDAILLDAPCSATGTIRRHPDVPWIKKPYDIEKLTEIQSELLDRVVGWVKPGGL 379 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ + E V L +EL+ + + +A ++ EG++R P Sbjct: 380 IVYCTCSLEAAEGEAQVSAFLERQGGKMELIAVEAGEVGG--LAECVTKEGYLRCLPCHS 437 Query: 421 EKIDGVSSGMDGFFAVALRR 440 +D VS GMDGFFA LRR Sbjct: 438 AAVDPVSKGMDGFFAARLRR 457 >gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1] gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1] Length = 453 Score = 306 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 203/465 (43%), Gaps = 39/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ ++AR ++ + V + L+ L D+ IV LR L Sbjct: 1 MKN-VSARELALLVSKAVEDEGAYANLALNKLLEQYQPGKL---DRAFATEIVYGVLRNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ID VL L L + ++ +LR+ QI+++ V D A + +V AK+ ++ Sbjct: 57 NTIDWVLAHFLKQPLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESVNLAKKY-GHQG 115 Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 K VN +LR V+R++ + IA P W ER YG E+ +A+ Sbjct: 116 APKFVNGVLRNVARQQHSLEFPDSKEAPVDHIALKYSHPTWLVERWLMQYGFEQTIALCQ 175 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEG 221 A P + E +L A + + ++ L F G Sbjct: 176 ANNRPAPNTVRTNTLKISREDLMARLKAEGVEARETKFVPEGLNLSGFLSYRTLKSFQGG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 + VQD S+ + + + VLD+ +APGGKT L + ++ A D+ +L+ Sbjct: 236 FFQVQDESSMLVAHVLNPSSGAKVLDVASAPGGKTTHLAQLMGDSGQIIAFDIYSHKLDL 295 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N RL + + DA D K D VLVDAPCS G +RR PD W +D Sbjct: 296 IMDNCRRLGIQSIQAEVADARDLHKKYQGWADYVLVDAPCSGLGVLRRRPDSRWRKDPSQ 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + Q+++L ++PGG++V+S C++ K+++ VV++ L++ P + + L Sbjct: 356 LPGIVRLQKEILQSAAQCLRPGGVLVYSTCTITKEENIGVVEEFLKNHPEFI-MGDLRQL 414 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +D + + +G+I++ P + GMDGFF LR+ Sbjct: 415 LPPGLDEEKS-AEKGYIQLLPHV--------HGMDGFFIARLRKK 450 >gi|195970119|ref|NP_387430.2| putative sun protein [Sinorhizobium meliloti 1021] gi|307302539|ref|ZP_07582296.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C] gi|187904238|emb|CAC47903.2| Hypothetical Sun protein [Sinorhizobium meliloti 1021] gi|306903209|gb|EFN33799.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C] Length = 470 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 5/439 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ +R ++ +L+ V+ ++ L +LD E G+ A+R LS+ D+ LVRAI+N LR LP Sbjct: 34 KPGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLP 93 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI A +D +L + LP +L+ +L V+ QILYLDV D++ VDLAVEQA+ D NR FA Sbjct: 94 RIRAAIDSLLQTPLPEGARALEHVLTVAATQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR+SREK E+L+++ + +P WF +RL YG ++ IS+A + P IDLT Sbjct: 154 SLVNAVLRRLSREKEEILEKLRQVPAMPGWFFDRLVACYGPDQAERISEAQLVPAAIDLT 213 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D +WA +L +LPTG +RL+E SI SL GF+EG WWVQDA+ASIP +LFG ++ Sbjct: 214 VKSDAASWAERLAGTVLPTGSVRLQEFSGSIPSLSGFSEGAWWVQDAAASIPARLFGDIS 273 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+DLCAAPGGKTAQL+++GA+VTALD S RL +L+ NL+RL A E D ++ Sbjct: 274 GKKVVDLCAAPGGKTAQLVLAGAEVTALDQSSSRLRRLKANLERLGFEA-RTKESDMAEF 332 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P++LFDA L+DAPCSSTGT RRHPDVLWT+ D+ K A Q +LL ++ VKPGG++ Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPQDVEKLARLQERLLRHALTLVKPGGLI 392 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD + EEVV +V+ E VP+++A W ++ A ++ G R TP ML Sbjct: 393 VFSNCSLDPLEGEEVVARVVA--DSGCERVPIDAADWPGLEKA--ITALGEFRTTPAMLP 448 Query: 422 KIDGVSSGMDGFFAVALRR 440 + G+DGF+A LRR Sbjct: 449 LEPPFAGGLDGFYAAVLRR 467 >gi|150398383|ref|YP_001328850.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419] gi|150029898|gb|ABR62015.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419] Length = 470 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 220/439 (50%), Positives = 303/439 (69%), Gaps = 5/439 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ +R ++ +L+ V+ ++ L +LD E G+ +R L+ D+ LVRAI+N LR LP Sbjct: 34 KPGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPVYRELNDADRALVRAILNSALRHLP 93 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI A +D +L + LP +L+ +L V+ AQILYLDV D++ VDLAVEQA+ D NR FA Sbjct: 94 RIRAAIDSLLQTPLPEGARALEHVLTVAAAQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR+SREK +L+R+ + +P WF +RL YG+++ ISDA + P ID+T Sbjct: 154 SLVNAVLRRLSREKEAILERLQQVPAMPGWFFDRLVTCYGRDQAERISDAQLVPAAIDVT 213 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D +WA +LN +LPTG +RL++ SI SLPGF+EG WWVQDA+ASIP +LFG ++ Sbjct: 214 VKSDAASWADRLNGTVLPTGSVRLQDFDGSIPSLPGFSEGGWWVQDAAASIPARLFGDIS 273 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+DLCAAPGGKTAQL+++GAKV ALD S RL +L+ NL+RL L + E D D+ Sbjct: 274 GRKVVDLCAAPGGKTAQLVLAGAKVIALDQSSSRLRRLKANLERLGLESA-TKEADMADF 332 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P++LFDA L+DAPCSSTGT RRHPDVLWT+ DD+ K A Q +LL ++ VKPGG++ Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPDDVEKLAGLQERLLRHALTLVKPGGLL 392 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD ++ EEVV +V+ E VP+++A W ++ A ++ G R TP ML Sbjct: 393 VFSNCSLDPREGEEVVARVVA--DGGCERVPIDAAAWPGLEQA--ITALGEFRTTPAMLS 448 Query: 422 KIDGVSSGMDGFFAVALRR 440 +SG+DGF+A LRR Sbjct: 449 LGPPFASGLDGFYAAVLRR 467 >gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574] gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 197/465 (42%), Gaps = 39/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + AR ++ +L V + L+ L D+ I LR L Sbjct: 1 MKK-VTARDLALQVLKVVEEEGAYANLALNRYLELYQPGKL---DRAFATEITYGVLRNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ID VL L L + ++ +LR+ QI+++ V D A + +VE AK+ + Sbjct: 57 NTIDWVLAHFLKQPLAAQTVWVRNILRMGTYQIMFMPRVPDSAACNESVELAKKY-GHTG 115 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 AK VN +LR + + I+ P W ER +G ++ +A+ Sbjct: 116 AAKFVNGVLRNVARQQGELDFPDPQESPIDYISLKYSHPTWLVERWLKEFGFDQTVALCK 175 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEG 221 A P + + +L + T + + SLP F EG Sbjct: 176 ANNHPAPNTIRTNTLKINRTDLKARLEFEGVETRVTKYAPEGLHLNGFLSYQSLPSFQEG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 ++ VQD S+ + + ++D+ +APGGKT L + ++ A+D+ +LE Sbjct: 236 LFQVQDESSMLVAHALNPASGARIIDVASAPGGKTTHLAQLMKDRGEIVAVDIHPHKLEL 295 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 ++ N RL + + + DA + D VLVDAPCS G +RR PD W +D Sbjct: 296 IKENCQRLGINSIRTLLADARCLPAEYTNWADYVLVDAPCSGLGVLRRRPDARWRKDPSQ 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + QR++L ++++PGG++++S C++ ++++ V++ L P L L Sbjct: 356 LPGIVRLQREILESASTYLRPGGVLIYSTCTITREENIGVLEAFLADHP-EFSLGDLRQF 414 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G+I++ P + GMDGFF LR+ Sbjct: 415 LPPGL-AEEETAENGFIQLLPHI--------HGMDGFFIARLRKK 450 >gi|227823840|ref|YP_002827813.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] gi|227342842|gb|ACP27060.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] Length = 473 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 221/439 (50%), Positives = 299/439 (68%), Gaps = 5/439 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ +R ++ +L+ V+ + SL +LD E+G+ A+R L+ D+ LVRAI+N LR LP Sbjct: 34 KPGLKSRQAAAKILAAVIDRNTSLDGMLDQEHGNPAYRELNDADRALVRAILNSALRHLP 93 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI A +D +L + LP +L+ +L V+ AQILYLD+ D++ VDLAVEQA+ D NR FA Sbjct: 94 RIRAAIDSLLQTPLPEGARALEHVLTVAAAQILYLDIPDHSAVDLAVEQAQSDPRNRRFA 153 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR+SREK +L+ + + IP WF ERL YG+ AIS+A + P IDLT Sbjct: 154 SLVNAVLRRLSREKQAILEALQTVPAIPAWFYERLVAHYGRAEAEAISEAQLVPAAIDLT 213 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK + WA +L +LPTG +RL + +I SLPGF+EG WWVQDA+ASIP +LFG L+ Sbjct: 214 VKSEPALWAERLGGTVLPTGSVRLGDFTGTIPSLPGFSEGAWWVQDAAASIPARLFGDLS 273 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +V+DLCAAPGGKTAQLI++GAKVTALD S RL +L+ NL+RL L A E D ++ Sbjct: 274 GKTVVDLCAAPGGKTAQLILAGAKVTALDQSSSRLRRLKANLERLGLEA-RTKETDMAEF 332 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P +LFDA L+DAPCSSTGT RRHPDVLWT+ D+ K A Q +LL ++ V+PGGIV Sbjct: 333 RPDELFDAALLDAPCSSTGTTRRHPDVLWTKGPGDVEKLARLQERLLRHALTVVRPGGIV 392 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD ++ EEVV +V+ E +P+ ++ W ++ A ++ G R TP ML Sbjct: 393 VFSNCSLDPREGEEVVARVVA--DGDCERLPIAASDWPGLEAA--ITALGEFRTTPAMLP 448 Query: 422 KIDGVSSGMDGFFAVALRR 440 S+G+DGF+A LRR Sbjct: 449 LDQPFSAGLDGFYAAVLRR 467 >gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum thermopropionicum SI] gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum thermopropionicum SI] Length = 456 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 110/463 (23%), Positives = 198/463 (42%), Gaps = 38/463 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G++AR ++ +++ V + L+ L D+ + TLR L Sbjct: 5 TGLSARELALKVVNAVEEEGAYANLALNQVLEKHRPGKL---DRAFATELAYGTLRSLNT 61 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D VL+ + L + ++ +LR+ V Q++++D V AV + E A++ + Sbjct: 62 LDWVLEQFIKQPLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKY-GHAGTV 120 Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR +SR E+ I+ P W +R +G + +A+ A Sbjct: 121 KFVNGVLRNISRRLNEISFPALEDDPVKHISLRYSHPVWMVKRWLKEFGLDHTVALCRAN 180 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVW 223 P + + A +L L + SI SL F EG++ Sbjct: 181 NGPAPNTVRTNTLKITRDGLAERLRNEGLTVSETEFAPEGLKIDGFFSIGSLQSFKEGLF 240 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD S+ + + V+D C+APGGKT L + + ++ A+D+ +L ++ Sbjct: 241 QIQDESSMLAGRALMPAPGAFVIDACSAPGGKTTHLAQLMENRGRILAVDIHPHKLVLIK 300 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N RL + + + DA + D +LVDAPCS G +RR PD W ++ + Sbjct: 301 ENCSRLGINIVEGLAGDARELPENLYNKADFILVDAPCSGLGVLRRRPDARWRKEPGQLP 360 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 QR++L +K G++V+S C++ ++++ V+ L P L L+ Sbjct: 361 AIIQLQREILEGVARCLKKNGVIVYSTCTITREENLRQVEWFLDKHP-QFVLEDLSPFLP 419 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +D L G++++ P GMDGFF +R+ Sbjct: 420 AGLDFEGTL-KGGFLQVLP--------YRHGMDGFFIARMRKK 453 >gi|307316130|ref|ZP_07595574.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83] gi|306897970|gb|EFN28712.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83] Length = 470 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 217/439 (49%), Positives = 299/439 (68%), Gaps = 5/439 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ +R ++ +L+ V+ ++ L +LD E G+ A+R LS+ D+ LVRAI+N LR LP Sbjct: 34 KLGLKSRQAAAKILAAVVDRKTPLDGMLDPERGNPAYRELSEADRALVRAILNSALRHLP 93 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI A +D +L + LP +L+ +L V+ QILYLDV D++ VDLAVEQA+ D NR FA Sbjct: 94 RIRAAIDSLLQTPLPEGARALEHVLTVAATQILYLDVPDHSAVDLAVEQAQSDPRNRRFA 153 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR+SREK E+L+++ + +P WF +RL YG ++ IS+A + P IDLT Sbjct: 154 SLVNAVLRRLSREKEEILEKLRQVPAMPGWFFDRLVACYGPDQAERISEAQLVPAAIDLT 213 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D +WA +L +LPTG +RL+E SI SL GF+EG WWVQDA+ASIP +LFG ++ Sbjct: 214 VKSDAASWAERLAGTVLPTGSVRLQEFSGSIPSLSGFSEGAWWVQDAAASIPARLFGDIS 273 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+DLCAAPGGKTAQL+++GA+VTALD S RL +L+ NL+RL A E D ++ Sbjct: 274 GKKVVDLCAAPGGKTAQLVLAGAEVTALDQSSSRLRRLKANLERLGFEA-RTKESDMAEF 332 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P++LFDA L+DAPCSSTGT RRHPDVLWT+ D+ K A Q +LL ++ VKPGG++ Sbjct: 333 RPEELFDAALLDAPCSSTGTTRRHPDVLWTKGPQDVEKLARLQERLLRHALTLVKPGGLI 392 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD + EEVV +V+ E VP+++A W ++ A ++ G R TP ML Sbjct: 393 VFSNCSLDPLEGEEVVARVVA--DSGCERVPIDAADWPGLEKA--ITALGEFRTTPAMLP 448 Query: 422 KIDGVSSGMDGFFAVALRR 440 + G+DGF+A LRR Sbjct: 449 LEPPFAGGLDGFYAAVLRR 467 >gi|315122151|ref|YP_004062640.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495553|gb|ADR52152.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 443 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 345/442 (78%), Positives = 393/442 (88%), Gaps = 2/442 (0%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKSGMNARLV++HLLSCV RKRISLTCLLD E GD AFR LS +DQ LVRAI++ TLRFL Sbjct: 1 MKSGMNARLVAAHLLSCVTRKRISLTCLLDPERGDIAFRKLSHKDQALVRAILSTTLRFL 60 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PRIDAVLD +L+SSL +KK SL+QL R+S+AQILYLDVADYAVVDLAVEQAKRD+ENRHF Sbjct: 61 PRIDAVLDLLLVSSLSKKKQSLRQLFRISIAQILYLDVADYAVVDLAVEQAKRDQENRHF 120 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + LVNSILRRVSREK ELLQR + IS+IP+WFK+RLE+FYGKE IS AC++P Y+DL Sbjct: 121 SNLVNSILRRVSREKTELLQRFSSISVIPQWFKKRLEDFYGKESTYCISQACLTPSYVDL 180 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK DIE WA+KLNAV+LPTGGIRL+E S+ SLPGFAEGVWWVQDASASIPVQLFG L Sbjct: 181 TVKSDIEIWANKLNAVVLPTGGIRLREFRGSVSSLPGFAEGVWWVQDASASIPVQLFGPL 240 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 N LSVLDLCAAPGGKTAQLI+SGAKVTALD+S RLEKL+ NL+RL L A++IIE DAFD Sbjct: 241 NGLSVLDLCAAPGGKTAQLILSGAKVTALDISNNRLEKLQHNLNRLRLCADNIIEGDAFD 300 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 Y PKKLFDAVLVDAPCSSTGT+RRHPDVLWTRD +DIV+SACFQ +LLL G++ VKPGGI Sbjct: 301 YRPKKLFDAVLVDAPCSSTGTMRRHPDVLWTRDAEDIVRSACFQERLLLHGLALVKPGGI 360 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 VVFSNCSLDKQDSE+VV+KVLRSS IPVE++ LN+A W +MAMA++PEGW+RITPDML Sbjct: 361 VVFSNCSLDKQDSEDVVRKVLRSSLIPVEIMSLNNASW--NNMAMAITPEGWLRITPDML 418 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 +I+GV SGMDGFFAVALRRLI Sbjct: 419 GEIEGVPSGMDGFFAVALRRLI 440 >gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437] Length = 453 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 127/464 (27%), Positives = 200/464 (43%), Gaps = 37/464 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +AR V+ +L V + LL+ S LS RD+ L +V TL+ Sbjct: 1 MTRPDSARNVALDVLIAVEERGAYSNLLLNDRLQRS---SLSPRDRGLATELVYGTLQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L+ ++ + ++ LLR+ + Q+ YLD V A V VE AK + +R Sbjct: 58 NTLDWILNKLVRKGIDTLDPWVRHLLRLGIYQLRYLDRVPSRAAVHETVEIAKA-RGHRG 116 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISI--------IPEWFKERLENFYGKERVLAISDA 171 LVN +LR R E + S+ PEW RL YG E ++ A Sbjct: 117 IPGLVNGVLRSYLRRGREWTLPDSPKSVTDLALVTSHPEWLVRRLVEVYGPETAHSVLKA 176 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEG 221 P + + V + E A L + P G L + S F EG Sbjct: 177 NNRPPGLSVRVNPLRGNRERVARLLQEEDPRLRIRLSPLSGQGLILTGGNPASGRLFREG 236 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278 + VQD S+ + +L VLD CAAPGGKT + + + A D+ +++ Sbjct: 237 WFTVQDESSMLVAELLAPRPGERVLDGCAAPGGKTGHLAERMENRGTLLACDIHPHKVKL 296 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + + RL L ++ + D + + FD VL+DAPCS G IRR PD+ W+++ + Sbjct: 297 IENQVRRLGLSMVEVRQADLRELPGTGEARFDRVLLDAPCSGWGVIRRKPDIKWSKNLQE 356 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + Q +LL V PGG +V+S C+L+ Q++ E + L+ P + Sbjct: 357 VDSLRQLQAELLEAAARLVTPGGTLVYSTCTLEPQENREQITAFLKKHPT-FQADSTLFD 415 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + AL+ +GW++I P E DGFF + + Sbjct: 416 TLPAPVREKALTGDGWVQILPHHFES--------DGFFIARMIK 451 >gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium leguminosarum bv. viciae 3841] Length = 460 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 226/424 (53%), Positives = 290/424 (68%), Gaps = 4/424 (0%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A+R L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 40 VVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLPRIDAAIAGLLDSPLPE 99 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA +D NR FAKLVN+ILRR+ REK + Sbjct: 100 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAILRRLGREKEQ 159 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L I ++ +P WF RLE YG++ LAIS++ + P IDLTVK D E WA +LN V+ Sbjct: 160 VLADIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLTVKSDPEGWAKRLNGVV 219 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 LPTGGIRL I SL GF EG WWVQDA+ASIP +LFG L DLCAAPGGKTA Sbjct: 220 LPTGGIRLAAFDGGIPSLEGFDEGAWWVQDAAASIPAKLFGDLAGKRTADLCAAPGGKTA 279 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QLI++G VTALD S+ RL +LR NLDRL L AE I D + P + FDA+L+DAPCS Sbjct: 280 QLILAGGAVTALDQSENRLRRLRSNLDRLGLKAETI-AADLTTFGPTERFDAILLDAPCS 338 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 STGT RRHPDVLWT+ +DI + A Q +LL ++ +KPGG +VFSNCSLD + E+VV Sbjct: 339 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTLVFSNCSLDPVEGEDVV 398 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +VL + VE VP+ + W ++ A ++P G R P ML+ DG+ SG+DGF+A Sbjct: 399 ARVLSDT-DAVERVPIGAGDWPGLEAA--ITPLGEFRTLPTMLKMPDGIGSGLDGFYAAV 455 Query: 438 LRRL 441 LRRL Sbjct: 456 LRRL 459 >gi|254700459|ref|ZP_05162287.1| Sun [Brucella suis bv. 5 str. 513] gi|261750960|ref|ZP_05994669.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513] gi|261740713|gb|EEY28639.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513] Length = 465 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 194/445 (43%), Positives = 263/445 (59%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++VVDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSVVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|241206925|ref|YP_002978021.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860815|gb|ACS58482.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 460 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 222/425 (52%), Positives = 292/425 (68%), Gaps = 4/425 (0%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A+R L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 40 VVDRKLPLDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLPRIDAAIAGLLDSPLPE 99 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA D NR FAKLVN+ILRR+ REK + Sbjct: 100 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANLDPRNRRFAKLVNAILRRLGREKEQ 159 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L +I ++ +P WF RLE YG++ LAIS++ + P IDLTVK D E WA +LN V+ Sbjct: 160 VLDQIGKVAPMPAWFIARLEKAYGRDAALAISESQLEPAAIDLTVKSDPEDWAKRLNGVV 219 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 LPTG +RL SI S+ GF EG WWVQDA+ASIP +LFG L DLCAAPGGKTA Sbjct: 220 LPTGSVRLAAFDGSIPSVEGFDEGAWWVQDAAASIPAKLFGDLLGKRTADLCAAPGGKTA 279 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QLI++G VTALD S+ RL +LR NLDRL L AE I D + P + FDA+L+DAPCS Sbjct: 280 QLILAGGAVTALDQSESRLRRLRSNLDRLGLKAETI-AADLTTFEPAERFDAILLDAPCS 338 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 STGT RRHPDVLWT+ +DI + A Q +LL ++ +KPGG +VFSNCSLD + E+VV Sbjct: 339 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPGGTLVFSNCSLDPVEGEDVV 398 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +VL + VE VP+ ++ W ++ A ++P G R P ML+ +G++SG+DGF+A Sbjct: 399 ARVLSDT-DAVERVPIGASDWPGLEAA--ITPLGEFRTLPTMLKMPEGIASGLDGFYAAV 455 Query: 438 LRRLI 442 LRR+ Sbjct: 456 LRRVA 460 >gi|62290679|ref|YP_222472.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941] gi|82700594|ref|YP_415168.1| hypothetical protein BAB1_1822 [Brucella melitensis biovar Abortus 2308] gi|148559652|ref|YP_001259653.1| sun protein [Brucella ovis ATCC 25840] gi|189024891|ref|YP_001935659.1| Sun [Brucella abortus S19] gi|237816180|ref|ZP_04595175.1| Sun, sun protein [Brucella abortus str. 2308 A] gi|254689968|ref|ZP_05153222.1| Sun [Brucella abortus bv. 6 str. 870] gi|254698119|ref|ZP_05159947.1| Sun [Brucella abortus bv. 2 str. 86/8/59] gi|254708333|ref|ZP_05170161.1| Sun [Brucella pinnipedialis M163/99/10] gi|254708815|ref|ZP_05170626.1| Sun [Brucella pinnipedialis B2/94] gi|254731003|ref|ZP_05189581.1| Sun [Brucella abortus bv. 4 str. 292] gi|256030341|ref|ZP_05443955.1| Sun [Brucella pinnipedialis M292/94/1] gi|256061838|ref|ZP_05451973.1| Sun [Brucella neotomae 5K33] gi|256258223|ref|ZP_05463759.1| Sun [Brucella abortus bv. 9 str. C68] gi|256370218|ref|YP_003107729.1| sun protein [Brucella microti CCM 4915] gi|260547084|ref|ZP_05822822.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260755503|ref|ZP_05867851.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260758726|ref|ZP_05871074.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260762560|ref|ZP_05874897.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260884524|ref|ZP_05896138.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261315833|ref|ZP_05955030.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316307|ref|ZP_05955504.1| fmu domain-containing protein [Brucella pinnipedialis B2/94] gi|261325843|ref|ZP_05965040.1| fmu domain-containing protein [Brucella neotomae 5K33] gi|265987375|ref|ZP_06099932.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1] gi|294851054|ref|ZP_06791730.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL 07-0026] gi|297249071|ref|ZP_06932779.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus bv. 5 str. B3196] gi|62196811|gb|AAX75111.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941] gi|82616695|emb|CAJ11778.1| SAM (and some other nucleotide) binding motif:Bacterial Sun/eukaryotic nucleolar Nop1/Nop2:Antitermination protein NusB:NusB [Brucella melitensis biovar Abortus 2308] gi|148370909|gb|ABQ60888.1| sun protein [Brucella ovis ATCC 25840] gi|189020463|gb|ACD73185.1| Sun [Brucella abortus S19] gi|237788642|gb|EEP62855.1| Sun, sun protein [Brucella abortus str. 2308 A] gi|256000381|gb|ACU48780.1| sun protein [Brucella microti CCM 4915] gi|260095449|gb|EEW79327.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260669044|gb|EEX55984.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260672986|gb|EEX59807.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675611|gb|EEX62432.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260874052|gb|EEX81121.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261295530|gb|EEX99026.1| fmu domain-containing protein [Brucella pinnipedialis B2/94] gi|261301823|gb|EEY05320.1| fmu domain-containing protein [Brucella neotomae 5K33] gi|261304859|gb|EEY08356.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10] gi|264659572|gb|EEZ29833.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1] gi|294821697|gb|EFG38693.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL 07-0026] gi|297174204|gb|EFH33561.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus bv. 5 str. B3196] Length = 465 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 193/445 (43%), Positives = 262/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|256160512|ref|ZP_05458201.1| Sun [Brucella ceti M490/95/1] gi|256255718|ref|ZP_05461254.1| Sun [Brucella ceti B1/94] gi|261222929|ref|ZP_05937210.1| fmu domain-containing protein [Brucella ceti B1/94] gi|265998888|ref|ZP_06111445.1| fmu domain-containing protein [Brucella ceti M490/95/1] gi|260921513|gb|EEX88166.1| fmu domain-containing protein [Brucella ceti B1/94] gi|262553577|gb|EEZ09346.1| fmu domain-containing protein [Brucella ceti M490/95/1] Length = 465 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 193/445 (43%), Positives = 262/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDITKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|307943521|ref|ZP_07658865.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp. TrichSKD4] gi|307773151|gb|EFO32368.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp. TrichSKD4] Length = 462 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 174/440 (39%), Positives = 256/440 (58%), Gaps = 6/440 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G AR V++ +L V+ K L L+L+ G S FR L +D+ LVRAI+ LR Sbjct: 27 KPGFAARKVAADILGNVVHKHRPLDGELELKSGHSGFRALEPKDRALVRAILGAALRHRG 86 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I +L +L +P K + +L V++AQ+LYLD+ D A V LAV+ A D +R + Sbjct: 87 EISEILTRLLDRDIPEKTGRVLDILHVAIAQMLYLDIPDRAAVSLAVDHASADSRSRVYK 146 Query: 122 KLVNSILRRVSREKIELLQRIA-GISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN +LRR+ RE+ + + + + PEW R YG+E I+ A +D+ Sbjct: 147 GLVNGVLRRLGRERDMMTEDLDGEVLNTPEWLFTRWVETYGEETARKIAAAHQHEAALDI 206 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +VK + + WA +L V+L IRL ++ L GF EG WWVQD +AS+P +L G + Sbjct: 207 SVKSNPKVWAERLEGVLLAGKTIRLSR-KGAVDGLVGFEEGAWWVQDLAASLPARLLGDV 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + +V DLCAAPGGKTAQL S KVTA+D+SK RL++L N+DRL L + + D Sbjct: 266 SGQTVADLCAAPGGKTAQLAASSGKVTAVDISKGRLKRLSQNMDRLGLP-VETVVADLRK 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 Y P +LFDA+L+D PCS+TGTIRRHPDV W + DI A Q++LL + ++KPGG Sbjct: 325 YDPPELFDAILLDVPCSATGTIRRHPDVPWLKGERDIETLAEIQKELLERVAGWLKPGGQ 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CS+++ + E ++ L++ + LVP+ + +SPEG++R P Sbjct: 385 MVYCTCSMERDEGEAQIEAFLKAH-LDFRLVPVAGDEIGG--LNACISPEGYVRTLPFHS 441 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + +G+DGFFA L+R Sbjct: 442 VDPNSELTGLDGFFAARLQR 461 >gi|23502667|ref|NP_698794.1| sun protein [Brucella suis 1330] gi|161619734|ref|YP_001593621.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365] gi|163845392|ref|YP_001623047.1| hypothetical protein BSUIS_B1292 [Brucella suis ATCC 23445] gi|254703581|ref|ZP_05165409.1| hypothetical protein Bsuib36_06589 [Brucella suis bv. 3 str. 686] gi|260568886|ref|ZP_05839354.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261754214|ref|ZP_05997923.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686] gi|23348676|gb|AAN30709.1| sun protein [Brucella suis 1330] gi|161336545|gb|ABX62850.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365] gi|163676115|gb|ABY40225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|260154270|gb|EEW89352.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|261743967|gb|EEY31893.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686] Length = 465 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 192/445 (43%), Positives = 261/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRHLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|254719803|ref|ZP_05181614.1| Sun [Brucella sp. 83/13] gi|265984821|ref|ZP_06097556.1| fmu domain-containing protein [Brucella sp. 83/13] gi|306839499|ref|ZP_07472307.1| Sun [Brucella sp. NF 2653] gi|264663413|gb|EEZ33674.1| fmu domain-containing protein [Brucella sp. 83/13] gi|306405444|gb|EFM61715.1| Sun [Brucella sp. NF 2653] Length = 464 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 192/445 (43%), Positives = 263/445 (59%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 25 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 84 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 85 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 144 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 145 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGVEKAATILAIHAYEPPIDF 204 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 205 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 264 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 265 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 323 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 324 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 383 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K + + L P + ++ EG++R TP L Sbjct: 384 IVFSNCSLHPLEGEEMARKAAEN----LLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 439 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 440 PPDRFDGNPHMAGMDGFFAARFKRV 464 >gi|325294195|ref|YP_004280059.1| SUN protein [Agrobacterium sp. H13-3] gi|325062048|gb|ADY65739.1| SUN protein [Agrobacterium sp. H13-3] Length = 461 Score = 300 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 223/440 (50%), Positives = 294/440 (66%), Gaps = 11/440 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR+ ++ +L+ V+ K+ SL +LD E G+ +R LS D+ LVRAIVN LR LP Sbjct: 33 KPGLAARVAATRILAAVLEKKTSLDGMLDSENGNPVYRALSLADRALVRAIVNSALRHLP 92 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI+A L +L LP+ SL +L V AQ+L+LDV D++ VDLAVEQA RD NR FA Sbjct: 93 RIEAALSMLLDGPLPQGARSLHHVLVVGAAQVLHLDVPDHSAVDLAVEQAHRDPRNRRFA 152 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 KLVN++LRR+ REK E+ + IA + ++P+WF RL + YG E IS+A ++P IDLT Sbjct: 153 KLVNAVLRRLGREKAEIEKAIADVPVLPDWFYARLVSAYGDEVAKRISEAQLTPSSIDLT 212 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA KL +LP G +RL E I SL GFAEG WWVQD +AS+PV+L G ++ Sbjct: 213 VKKDQAVWAEKLGGTVLPNGSVRLGEFEGQIPSLEGFAEGAWWVQDLAASMPVKLMGDIS 272 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V DLCAAPGGKTAQL ++GAKVTALD S RL +LR NLDRL L+AE + E + Y Sbjct: 273 GKRVADLCAAPGGKTAQLALAGAKVTALDQSGNRLRRLRENLDRLGLHAETV-EANMLKY 331 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P++LFDAVL+DAPCSSTGT+R+HPDV WT+D +DI K A Q ++L ++ V GGIV Sbjct: 332 QPEQLFDAVLLDAPCSSTGTLRKHPDVCWTKDENDIAKLAALQGQMLRHALTLVGAGGIV 391 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD + E ++ +VL +P E V + W ++ A ++ EG +R TPDM Sbjct: 392 VFSNCSLDPSEGEAMIAQVLAENP-DFERVAVRKDDWPGMEAA--VTAEGDLRTTPDMF- 447 Query: 422 KIDGVSSGMDGFFAVALRRL 441 G+DGFF+ LR+ Sbjct: 448 ------GGIDGFFSSVLRKK 461 >gi|260168015|ref|ZP_05754826.1| sun protein [Brucella sp. F5/99] gi|261757460|ref|ZP_06001169.1| RNA methyltransferase- sun protein [Brucella sp. F5/99] gi|261737444|gb|EEY25440.1| RNA methyltransferase- sun protein [Brucella sp. F5/99] Length = 465 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 193/445 (43%), Positives = 262/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGFALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|254714655|ref|ZP_05176466.1| Sun [Brucella ceti M644/93/1] gi|254717553|ref|ZP_05179364.1| Sun [Brucella ceti M13/05/1] gi|261219386|ref|ZP_05933667.1| fmu domain-containing protein [Brucella ceti M13/05/1] gi|261322448|ref|ZP_05961645.1| fmu domain-containing protein [Brucella ceti M644/93/1] gi|260924475|gb|EEX91043.1| fmu domain-containing protein [Brucella ceti M13/05/1] gi|261295138|gb|EEX98634.1| fmu domain-containing protein [Brucella ceti M644/93/1] Length = 465 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAE WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAESEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ R ++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRRKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771] gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771] Length = 452 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 200/461 (43%), Gaps = 38/461 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +NAR ++ +L V ++ L+ F L D+ +V TLR L +D Sbjct: 4 VNAREMALIVLKAVDQEGAYANIALNQVLEQRDFNKL---DRAFTTELVYGTLRALNTVD 60 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 VL L L + ++ +LR+ Q+L++ V A + A + + + ++ K Sbjct: 61 WVLAQFLKHPLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKY-GHKGQVKF 119 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR ++R+ + I+ P W ER N +GKE+ + I + + Sbjct: 120 VNGVLRNIARQHENIEYPDCEKDPVSHISLRYSHPIWMVERWLNQFGKEKTIRICQSNNT 179 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWV 225 P + + + A L + S+ + P F G++ V Sbjct: 180 PARFSIRTNTLQINRDNLAELLKQQGMIVDKTGFAPEGLNVEGFTSLRNFPAFRNGLFQV 239 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + N V+D CAAPGGKT L+ + ++ A D+ +L+ + N Sbjct: 240 QDESSILAGHAVKPAVNCRVIDACAAPGGKTTHLAQLMENKGEIIAADIYPHKLDLIEDN 299 Query: 283 LDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + II +D+ D VLVDAPCS G +RR PD W ++ + I Sbjct: 300 CQRLGIKCVKIINLDSRTLHNSYTGWADYVLVDAPCSGLGVLRRRPDARWRKEAEQIPAL 359 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QR++L V+PGG++V+S C++ ++++ E V+ L + + L ++ Sbjct: 360 VKIQREILESAALCVRPGGVLVYSTCTITEEENIEQVKYFLLTH-LDFVLEDMSRLLPSE 418 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ID L G+I+I P + +DGFF +R+ Sbjct: 419 IDWQNTLGK-GYIQILP--------YTHNIDGFFIARMRKK 450 >gi|172035456|ref|YP_001801957.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142] gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC 51142] Length = 452 Score = 299 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 121/464 (26%), Positives = 210/464 (45%), Gaps = 42/464 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 NAR ++ +L + RK LD + + L+ D+ L +V +R Sbjct: 5 TKKTNARQLTLDILRQIDRKNSYTDIALDRAFNQTH---LNPSDRSLCTELVYGIIRHQR 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D ++D + ++ L+++L + + Q+ YLD + A V+ +V AK K NR Sbjct: 62 TLDTLIDQLGKKKAKQQPPDLRRILHIGLYQLRYLDNIPPSAAVNTSVNLAKEYKLNR-L 120 Query: 121 AKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + +VN ILR+ R +++IA P+W E +G+ + Sbjct: 121 SGVVNGILRQYLRSSETDGDPLILPPNPIEKIAIQYSFPDWMIETWVQQWGEATTEQLCH 180 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAE 220 ID+ + +ET +L + +RL+ SI +LPGF + Sbjct: 181 WFNQTPTIDIRINPLKTTLETLQTQLTEAGINATPFPPLPCTLRLQGKIGSIQTLPGFHQ 240 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G W +QD+SA + L +++D CAAPGGKT + + + A D + RL+ Sbjct: 241 GHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHMAELMGDQGTIIACDRTPSRLK 300 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 K++ N RL L + I D+ D VLVD PCS GT+ RHPD+ W + + Sbjct: 301 KVQQNAQRLQLNSIQTILGDSRHLPQLINTADRVLVDVPCSGLGTLHRHPDIRWRQTPEK 360 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + + Q+++L Q +VKP G +V++ C+L+ +++++++ L P L P + Sbjct: 361 IQELSRLQQEILTQAAQWVKPQGTLVYATCTLNPTENQQIIESFLTHHPQW-NLKPPSVH 419 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ WI+I P DGFF V L++ Sbjct: 420 WL----FSPFMTSSKWIQILPH--------EHHTDGFFMVKLKK 451 >gi|328541770|ref|YP_004301879.1| ribosomal RNA small subunit methyltransferase B [polymorphum gilvum SL003B-26A1] gi|326411522|gb|ADZ68585.1| Ribosomal RNA small subunit methyltransferase B [Polymorphum gilvum SL003B-26A1] Length = 439 Score = 299 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 178/441 (40%), Positives = 254/441 (57%), Gaps = 6/441 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G R ++ +L V+ R L LD G S FR L +D+ LVRAI+ LR Sbjct: 4 TPGFAVRKAAADILGAVVHARRPLDGELDPVSGHSGFRALDSKDRALVRAILGACLRRRG 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI A++D +L +P K + +L V+ AQ+L+LDV D A V +AV+ A D+ R + Sbjct: 64 RIAAIVDALLDRPIPEKTGRVLDILHVAAAQVLFLDVPDRAAVSVAVDLAAADRRARPYK 123 Query: 122 KLVNSILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN +LRR+SREK LL + + P+W +R +G+ +AI+ A + +DL Sbjct: 124 GLVNGVLRRLSREKDALLADFSDVRGTPPDWLFDRWTAAWGEATAVAIAHALANEPELDL 183 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D E WA +L ++ TG +RL ++ + G+ EG WWVQDA+A++P +L G L Sbjct: 184 TVKSDPELWAQRLGGRVVATGSVRLSR-KGAVETFEGYGEGAWWVQDAAAALPARLLGPL 242 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL +G +VTA+D+S +RL+++ NL RL A DI+ D D Sbjct: 243 AGKRVADLCAAPGGKTAQLAAAGGRVTAVDISGKRLKRVAENLARLGFEA-DIVAADLKD 301 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P + FDA+L+DAPCS+TGTIRRHPDV WT+ + DI A Q LL + ++ PGG Sbjct: 302 WQPAERFDAILLDAPCSATGTIRRHPDVAWTKRSQDIATLAGVQALLLRRAAGWLVPGGT 361 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ ++ E + L P LVP+ +A ++ EG +R P L Sbjct: 362 LVYCTCSLELEEGEAQIAAFLAEVPG-FALVPVAPGEIGG--LAECVTDEGCLRTLPCHL 418 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + G+DGFFA L RL Sbjct: 419 GGAEAADGGLDGFFAARLTRL 439 >gi|306841594|ref|ZP_07474291.1| Sun [Brucella sp. BO2] gi|306288340|gb|EFM59703.1| Sun [Brucella sp. BO2] Length = 464 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 192/445 (43%), Positives = 264/445 (59%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 25 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 84 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 85 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 144 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 145 GLVNALLRRLARNKERALAHTFEPEANVPEWFSKSITDAYGAEKAATILAMHAYEPPIDF 204 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 205 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 264 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 265 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 323 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q +LL + VKPGG+ Sbjct: 324 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLADLQGRLLAHAATLVKPGGV 383 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K +P+ L P + ++ EG++R TP L Sbjct: 384 IVFSNCSLHPLEGEEMARKA-AENPL---LEPFPITEQDCPGLEGLVTAEGFLRSTPADL 439 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 440 PPDRFDGNPHMAGMDGFFAARFKRV 464 >gi|27375690|ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110] gi|27348828|dbj|BAC45844.1| SUN protein [Bradyrhizobium japonicum USDA 110] Length = 448 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 174/439 (39%), Positives = 256/439 (58%), Gaps = 5/439 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ ++ V+ K +L LD + L+ RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADIVDGVLHKHRTLDDQLDGSGAHPGLKTLADRDRALMRRLVATVLRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + VL +L +P + Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LGHVLSRLLDKGIPSEAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAARYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE L++ +A S +P W R YG+ ++ A +DLT Sbjct: 133 LVNAVLRRCAREGQALVEEVATQSLDLPPWLLARWRAHYGEATARDMALALGHEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E WA +L+ LPTG +R L S+ LPGFAEG WWVQDA+A++P +LFG + Sbjct: 193 VKSDAEQWASRLHGETLPTGTVR-MLLHGSVTMLPGFAEGQWWVQDAAAALPARLFGDIK 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 S+ DLCAAPGGKTAQL +GA VTA+D S R+ +LR NL RL L AE ++ A Sbjct: 252 GKSIADLCAAPGGKTAQLAHAGAHVTAIDRSPARVARLRENLARLSLQAETVVADAAEWA 311 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P + FD +L+DAPC+STGTIRRHPDV W R DI Q++LL + +S +KPGG + Sbjct: 312 GPAEGFDGILIDAPCTSTGTIRRHPDVAWLRQESDIAALTALQQRLLRKSVSLLKPGGTL 371 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E+ + +L + P + VP+ ++ + ++ ++ EG +R P L Sbjct: 372 VYCTCSLEPEEGEQAIATLLAAEP-ALRRVPIEAS--EVSGLSEIITAEGDLRTLPSHLP 428 Query: 422 KIDGVSSGMDGFFAVALRR 440 D G+DGFFA L + Sbjct: 429 NADPKLGGLDGFFAARLVK 447 >gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. oral taxon 786 str. D14] gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. oral taxon 786 str. D14] Length = 506 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 125/459 (27%), Positives = 200/459 (43%), Gaps = 36/459 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L+ V ++ LL+ S L+ D L +V T++ L ID Sbjct: 55 ARSVALQVLTAVEQEGAYSNLLLNGALQKS---GLTGPDAGLATELVYGTIQRLNTIDYF 111 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L+ + L + ++ LLR+S Q+ YLD + +A V+ AV AKR K ++ + +VN Sbjct: 112 LEQFVTKGLAKLAPWVRNLLRLSFYQLQYLDRIPPHAAVNEAVNLAKR-KGHQGISGMVN 170 Query: 126 SILRRVSREKI--------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR V R K + +QRIA PEW YG+ AI A P Sbjct: 171 GVLRNVLRRKEELRLPEGLDPVQRIALEHSHPEWMVALWIQQYGESAAEAICRANNEPPS 230 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + L + + + ++ + EG+ VQD Sbjct: 231 VSVRVNRTKASRDEVLRLMEEQGLRASASPISPDGIVVHSGGNMALTSWYREGLISVQDE 290 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + ++VLD CAAPGGKT + + +V A D+ + + + + R Sbjct: 291 SSMLVAEALDPQPGMNVLDCCAAPGGKTCHIAEIMEGRGRVLANDIHPHKAKLIEDHAKR 350 Query: 286 LHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L D + DA + FD +L+D PCS G IRR PD+ W + +D+ + A Sbjct: 351 LGLDNVDTLSGDALQLAERLKAASFDRILLDVPCSGLGVIRRKPDLKWAKKPEDVTEIAG 410 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR LL +KPGG++V+S C+++ +++ E+V L P S + Sbjct: 411 VQRTLLDSVSGLLKPGGLLVYSTCTIEPRENAEMVASFLSRHPEFELADEPISWKERGAL 470 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A A E ++I P DGF+ LRR Sbjct: 471 AAAAGRVEAGLQILPQDA--------HSDGFYIARLRRK 501 >gi|225853258|ref|YP_002733491.1| Fmu domain-containing protein, Sun [Brucella melitensis ATCC 23457] gi|256114379|ref|ZP_05455112.1| Fmu domain protein, Sun [Brucella melitensis bv. 3 str. Ether] gi|256263253|ref|ZP_05465785.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9] gi|265995679|ref|ZP_06108236.1| fmu domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|225641623|gb|ACO01537.1| Fmu domain protein, Sun [Brucella melitensis ATCC 23457] gi|262766963|gb|EEZ12581.1| fmu domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263093217|gb|EEZ17314.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9] gi|326409818|gb|ADZ66883.1| Fmu domain-containing protein, Sun [Brucella melitensis M28] gi|326539536|gb|ADZ87751.1| Fmu domain protein, Sun [Brucella melitensis M5-90] Length = 465 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ L Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALHNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMDDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|159185402|ref|NP_355752.2| Sun protein [Agrobacterium tumefaciens str. C58] gi|159140651|gb|AAK88537.2| Sun protein [Agrobacterium tumefaciens str. C58] Length = 461 Score = 296 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 220/440 (50%), Positives = 294/440 (66%), Gaps = 11/440 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR+ ++ +L+ V+ K+ S+ +LD E G+ +R LS D+ LVRA+VN LR LP Sbjct: 33 KPGLAARIAATRILAAVLEKKTSMDGMLDSENGNPVYRALSLADRALVRAVVNSALRHLP 92 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI+ L +L LP+ SL +L V AQ+LYLDV D++ VDLAVEQA RD NR F Sbjct: 93 RIETALSMLLDGPLPQGARSLHHVLVVGAAQMLYLDVPDHSAVDLAVEQAHRDPRNRRFV 152 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 KLVN++LRR+ REK E+ + IA + ++PEWF RL + YG E IS A ++P IDLT Sbjct: 153 KLVNAVLRRLGREKAEIEKAIADVPVLPEWFYARLVSAYGDEVAQRISQAQLTPSCIDLT 212 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L ++P G +RL E I SL GFAEG WWVQD +AS+PV+L G ++ Sbjct: 213 VKADPALWAERLGGTLMPNGSVRLGEFEGQIPSLDGFAEGAWWVQDLAASMPVRLLGDIS 272 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V DLCAAPGGKTAQL ++GA+VTALD S RL +LR NLDRL L+AE + E + Y Sbjct: 273 GKRVADLCAAPGGKTAQLALAGARVTALDQSGNRLRRLRENLDRLGLHAETV-EANMLKY 331 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P++LFDAVL+DAPCSSTGT+R+HPDV WT+D +DI K A Q ++L ++ V PGG+V Sbjct: 332 QPEQLFDAVLLDAPCSSTGTLRKHPDVCWTKDENDIAKLAALQGQMLRHALTLVGPGGLV 391 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD + EE++ +VL +P VE V ++ W ++ A +S G +R TPDM Sbjct: 392 VFSNCSLDPSEGEEMIAEVLAENP-DVERVAVHREDWPGMEAA--ISAAGDLRTTPDMF- 447 Query: 422 KIDGVSSGMDGFFAVALRRL 441 G+DGFF+ LR+ Sbjct: 448 ------GGVDGFFSSVLRKK 461 >gi|154243996|ref|YP_001414954.1| sun protein [Xanthobacter autotrophicus Py2] gi|154158081|gb|ABS65297.1| sun protein [Xanthobacter autotrophicus Py2] Length = 471 Score = 296 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 165/442 (37%), Positives = 252/442 (57%), Gaps = 13/442 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR+++ L V+R +L LD + L RD+ L I+ +LR + Sbjct: 42 TPGLAARILAVDGLEQVLRHGAALEDALDADVA------LDPRDRALAYRILATSLRRIG 95 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A++ ++ LP+ L+ +L QIL++DV ++A V L V+ A+ D+ FA Sbjct: 96 TLRALIAKLMERGLPKSAPRLESVLLAGATQILFMDVPNHAAVGLCVDVARADRNTAGFA 155 Query: 122 KLVNSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR++RE L+ I+ + PEW +R YG E AI+ +D+ Sbjct: 156 GLVNAVLRRLTREADALMVGISPDFADTPEWMGQRWIKAYGLETTRAIAAMHKVEPPLDI 215 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D WA +L+ +LPTG +R+ + + +LPGFAEG WWVQDA+A++P +L G + Sbjct: 216 TVKADPALWAERLSGEVLPTGSVRILQA-GPVRALPGFAEGDWWVQDAAAALPARLLGDV 274 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 L V DLCAAPGGKTAQL +GA VTA+D S RL +L+ NL+RL L A+ + Sbjct: 275 KGLKVADLCAAPGGKTAQLAAAGAIVTAVDRSSSRLTRLKENLERLKLSAQVV--AGDAA 332 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FDAVL+DAPCS+TGT+RRHPD+ + D+V A Q +L+ +KPGG Sbjct: 333 DFSGGPFDAVLLDAPCSATGTLRRHPDIAVNKRPGDLVTLAGLQARLIAHAADLLKPGGT 392 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S CSL+ ++ E+ V+++L + + P+ + ID ++P+G +R P Sbjct: 393 LVYSTCSLEPEEGEQQVERLLAARSDIIR-APIVPGEVEGIDP--FITPQGDVRTLPSHW 449 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 + + SG+DGFFA L+R Sbjct: 450 MRGEAERSGLDGFFAARLKRRA 471 >gi|256045414|ref|ZP_05448306.1| Fmu domain protein, Sun [Brucella melitensis bv. 1 str. Rev.1] gi|260565697|ref|ZP_05836180.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991841|ref|ZP_06104398.1| fmu domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|260151070|gb|EEW86165.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263002797|gb|EEZ15200.1| fmu domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] Length = 465 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 191/445 (42%), Positives = 260/445 (58%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ L Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALHNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVESNLTDLPGFAEGEWWVQDVAASLPARLMDDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K P L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRLDGNPHMAGMDGFFAARFKRV 465 >gi|306844795|ref|ZP_07477380.1| Sun [Brucella sp. BO1] gi|306274967|gb|EFM56737.1| Sun [Brucella sp. BO1] Length = 465 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 190/445 (42%), Positives = 263/445 (59%), Gaps = 10/445 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGAEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWWVQDVAASLPARLMGDI 265 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+RL A+ + + D Sbjct: 266 KGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMD 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ D+ K A Q +LL + VKPG + Sbjct: 325 FKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDVAKLAELQGRLLAHAATLVKPGSV 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K +P+ L P + ++ EG++R TP L Sbjct: 385 IVFSNCSLHPLEGEEMARKA-AENPL---LEPFPITEQDCPGLEGLVTVEGFLRSTPADL 440 Query: 421 E----KIDGVSSGMDGFFAVALRRL 441 + +GMDGFFA +R+ Sbjct: 441 PPDRFDGNPHMAGMDGFFAARFKRV 465 >gi|299133157|ref|ZP_07026352.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2] gi|298593294|gb|EFI53494.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2] Length = 446 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 168/439 (38%), Positives = 254/439 (57%), Gaps = 7/439 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ ++ V+ KR +L L+ + LS RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADIIDGVLHKRRTLDDQLEGPAAHPVLKTLSDRDRALMRRLVATVLRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + +L +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LGHLLSRLLDRGIPSDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132 Query: 123 LVNSILRRVSREK-IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE + + G+ +P W R YG++ A++ A +DLT Sbjct: 133 LVNAVLRRCAREGLPLVEEVKDGMIDLPPWLVARWIKAYGEDNARAMARAIGHEPPLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E+WA +L+ MLPTG +R +L I LPGF+EG WWVQDA+A+IP +LFG + Sbjct: 193 VKTDSESWATRLHGEMLPTGTVR-TQLHGPITMLPGFSEGAWWVQDAAAAIPARLFGDIT 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 SV DLCAAPGGKTAQL +GA VTA+D S RL +L+ N RL L A + Sbjct: 252 GKSVADLCAAPGGKTAQLAQAGAHVTAVDRSAGRLARLKDNFARLSLEASCV--ATDATE 309 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FDA+L+DAPC +TGTIRRHPDV W ++ D+ Q++LL + ++ +KPGG++ Sbjct: 310 WDGGPFDAILLDAPCMATGTIRRHPDVAWLKNEADMGALNALQKRLLQKSVTLLKPGGML 369 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E+ + +L S P V+ +P+ + ++ ++ +G +R P L Sbjct: 370 VYCTCSLEPEEGEQAIASLLASEP-QVKRMPVTP--GELAGLSELITADGDVRTLPCHLP 426 Query: 422 KIDGVSSGMDGFFAVALRR 440 D SG+DGF+A L + Sbjct: 427 HADPKLSGLDGFYAARLVK 445 >gi|148251938|ref|YP_001236523.1| putative ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. BTAi1] gi|146404111|gb|ABQ32617.1| putative Ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. BTAi1] Length = 450 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 171/440 (38%), Positives = 244/440 (55%), Gaps = 6/440 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ ++ V+ K +L LD + L+ RD+ L+R +V TLR L Sbjct: 13 PGLAARRIAADVVDGVLHKHRTLDDQLDGTGAHPGLKQLADRDRALMRRLVATTLRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + VL +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LGHVLSRLLDRGVPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE LL + G I W R YG+ I+ A +DLT Sbjct: 133 LVNAVLRRCAREGAGLLDDVQGQPLDIAPWLLTRWIAHYGEATAKNIAAALGQEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L+ +LPT +R L S+ LPGFAEG WWVQDA+A++P +LFG + Sbjct: 193 VKSDAAQWAARLHGEVLPTETVR-TLLHGSVTVLPGFAEGQWWVQDAAAALPARLFGDVA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300 ++ DLCAAPGGKTAQL GA VTA+D S R+ +L+ N+ RL L A + + + Sbjct: 252 GKTMADLCAAPGGKTAQLAHGGAHVTAVDRSPARMARLKDNMTRLQLTAETAVADAAEWQ 311 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD +LVDAPC+STGTIRRHPDV W R DI + QR+LL + S +KPGG+ Sbjct: 312 PAATGGFDGILVDAPCTSTGTIRRHPDVGWLRSEADIAALSSVQRRLLTRAASLLKPGGM 371 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ ++ E+VV+ L EL + + +A ++ G +R P L Sbjct: 372 LVYCTCSLEPEEGEQVVESALA---DTTELRRVPITPSEVAGLAELITEAGDLRTLPCHL 428 Query: 421 EKIDGVSSGMDGFFAVALRR 440 D G+DGF+A L R Sbjct: 429 PHQDPRLGGLDGFYAARLER 448 >gi|146337494|ref|YP_001202542.1| putative ribosomal RNA small subunit methyltransferase B [Bradyrhizobium sp. ORS278] gi|146190300|emb|CAL74296.1| putative Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)(rsmB) [Bradyrhizobium sp. ORS278] Length = 450 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 174/440 (39%), Positives = 251/440 (57%), Gaps = 6/440 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ ++ V+ K +L LD + L+ RD+ L+R +V TLR L Sbjct: 13 PGLAARRIAADVIDGVLHKHRTLDDQLDGPGAHPGLKQLADRDRALMRRLVATTLRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + VL +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LGNVLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE LL G I W +R + YG+ I+ A +DLT Sbjct: 133 LVNAVLRRCAREGAALLDDAKGQPLDIAPWLLKRWTDHYGEATARDIAAALGQEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L+ +LPTG +R L S+ LPGFAEG WWVQDA+A++P +LFG + Sbjct: 193 VKSDPAQWASRLHGEVLPTGTVR-TLLHGSVTVLPGFAEGQWWVQDAAAALPARLFGDVA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-MDAFD 300 S+ DLCAAPGGKTAQL GA+VTA+D S R+ +L+ N+ RL L AE ++ + Sbjct: 252 GKSMADLCAAPGGKTAQLAHGGARVTAVDRSPARMSRLKDNMTRLQLPAETVVTDAAEWQ 311 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD +L+DAPC+STGTIRRHPDV W R+ DI + Q +LL + +KPGG Sbjct: 312 PADAGGFDGILLDAPCTSTGTIRRHPDVGWLRNEADIAALSGTQVRLLTRAAGLLKPGGT 371 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ ++ E+VV VL + + VP++ A + +A ++P G +R P L Sbjct: 372 LVYCTCSLEPEEGEQVVDHVLAA-GTELRRVPIDPA--EVAGLAELVTPMGDLRTLPCHL 428 Query: 421 EKIDGVSSGMDGFFAVALRR 440 D G+DGF+A L R Sbjct: 429 PHADPRLGGLDGFYAARLER 448 >gi|190893964|ref|YP_001980506.1| RNA methyltransferase - sun protein [Rhizobium etli CIAT 652] gi|190699243|gb|ACE93328.1| probable RNA methyltransferase - sun protein [Rhizobium etli CIAT 652] Length = 464 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 217/423 (51%), Positives = 286/423 (67%), Gaps = 4/423 (0%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 44 VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 103 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA +D NR FAKLVN++LRR+ REK Sbjct: 104 GARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDP 163 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L I ++ +P WF RLE YG++ LAIS + + P IDLTVK D E WA +LN V Sbjct: 164 VLAEIDKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVA 223 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 LPTGG+RL I SL GF EG WWVQDA+ASIP +LFG L+ DLCAAPGGKTA Sbjct: 224 LPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTA 283 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QLI++G VTALD S+ RL +LR NLDRL L AE + D + P + FDA+L+DAPCS Sbjct: 284 QLILAGGTVTALDQSESRLRRLRSNLDRLGLKAETV-AADLTTFKPAEGFDAILLDAPCS 342 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 STGT RRHPDVLWT+ +DI + A Q +LL ++ +KP G +VFSNCSLD + EEVV Sbjct: 343 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPLGTLVFSNCSLDPAEGEEVV 402 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +VL + +E V +++ W ++ A ++ G R P ML+ +G++SG+DGF+A Sbjct: 403 ARVLSDT-DAIERVAISAGDWPGLEAA--ITSLGEFRTLPTMLKMPEGIASGLDGFYAAV 459 Query: 438 LRR 440 LRR Sbjct: 460 LRR 462 >gi|90421553|ref|YP_529923.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18] gi|90103567|gb|ABD85604.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18] Length = 450 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 174/440 (39%), Positives = 253/440 (57%), Gaps = 6/440 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V+ K +L L+ + LS RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLHKHRTLDDQLEGAAAHPGLKTLSDRDRALMRRLVATILRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + VL +L LP Q L + AQIL+++V D+A VDL+V + D+ +A Sbjct: 73 LGHVLSRMLDRGLPTDAPRAQSALLIGAAQILWMEVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE L+ + G S +P W R YG + AI+ A +DL+ Sbjct: 133 LVNAVLRRCAREGQPLIDEVQGQSLDVPPWLLARWSAHYGADTARAIARAIGEEPSLDLS 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E WA +L+ +LPTG +R L S+ LPGF +G WWVQDA+A++P +LFG L Sbjct: 193 VKSDAEAWASRLHGEVLPTGTVR-TLLQGSVKMLPGFDDGQWWVQDAAAALPARLFGDLT 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300 SV DLCAAPGGKTAQL +GA VTA+D S+ R+ +LR NL RL L A + + + Sbjct: 252 GKSVADLCAAPGGKTAQLCNAGAWVTAIDRSQSRVARLRENLGRLGLPAETAVADAAEWP 311 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FDAVL+DAPCSSTGTIRRHPDV W + DI A Q++LL + +S +KPGG Sbjct: 312 GNGGDGFDAVLLDAPCSSTGTIRRHPDVAWLKQEADIGALAAQQQRLLHKAVSLLKPGGT 371 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ ++ E + +L + + P++S+ + + ++P+G +R P L Sbjct: 372 LVYCTCSLEPEEGEVAIAALLAGNSG-MRRAPVDSS--EVAGLGDLITPDGALRTLPCHL 428 Query: 421 EKIDGVSSGMDGFFAVALRR 440 D G+DGF+A L + Sbjct: 429 PHPDPRLGGLDGFYAARLVK 448 >gi|239832893|ref|ZP_04681222.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301] gi|239825160|gb|EEQ96728.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301] Length = 465 Score = 294 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 196/446 (43%), Positives = 265/446 (59%), Gaps = 10/446 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 25 RPGLAARLCAARLLGAVIEKNTSLDGLTDNTHGHPQYLALEPRDRALVRAILGSALRNRG 84 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V++AQI YLD+ D++ VDLAVE A D NR +A Sbjct: 85 SIERAINKRLDRPLPENAVALKHLLHVAIAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 144 Query: 122 KLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR+SR K + + +PEWF + + YG E+ AI ID Sbjct: 145 GLVNALLRRLSRNKERALAHTLEPETNVPEWFAKSITEAYGAEKAAAILAMHAYEPPIDF 204 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D E WA KL V LP G +RL+ + ++ L GFAEG WWVQD +AS+P +L G + Sbjct: 205 TVKGDAEAWAEKLGGVALPNGSVRLQTVEGNLTDLLGFAEGDWWVQDVAASLPARLMGDI 264 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++LR NL+RL A+ + + D Sbjct: 265 RGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLRGNLERLGFEAKTV-ATNLMD 323 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 324 FQPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 383 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSL + EE+ +K +P+ L P + ++ EG++R TP L Sbjct: 384 IVFSNCSLHPLEGEEMARKA-AENPL---LEPFPITEQDCSGLEGLVTVEGFLRSTPADL 439 Query: 421 E----KIDGVSSGMDGFFAVALRRLI 442 + +GMDGFFA +R Sbjct: 440 PPKRFDGNPQMAGMDGFFAARFKRRA 465 >gi|158426322|ref|YP_001527614.1| rRNA SAM-dependent methyltransferase [Azorhizobium caulinodans ORS 571] gi|158333211|dbj|BAF90696.1| rRNA SAM-dependent methyltransferase [Azorhizobium caulinodans ORS 571] Length = 456 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 176/440 (40%), Positives = 257/440 (58%), Gaps = 13/440 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ ARL+++ L ++R SL + L RD+ L IV LR L Sbjct: 28 SAGLPARLLAADALDRILRGNASLEDAFIHD------AGLEPRDRALAFRIVATALRRLG 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + AVL ++ P+ ++ +L V AQIL++DV D+A V L+V+ A+ D FA Sbjct: 82 TLRAVLTALMERGAPKSAPKVETVLLVGAAQILFMDVPDHAAVGLSVDIARGDNSTAGFA 141 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 L+N++LRR++RE+ E L A + PEW ++R YG ER AI+D +D+ Sbjct: 142 GLINAVLRRLAREREERLAAFATLGLDTPEWLRQRWTKAYGPERAKAITDILSHEPALDI 201 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D WA KL +LPTG +R+ + ++ +LPG+ +G WWVQDA+A++P +L G + Sbjct: 202 TVKSDAAGWAEKLGGEVLPTGTVRVLQA-GAVRALPGYEDGEWWVQDAAAALPARLLGDV 260 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 SV DLCAAPGGKTAQL +GAKVTA+D S RL +L NL RL L A D+ E DA Sbjct: 261 AGKSVADLCAAPGGKTAQLAAAGAKVTAVDRSGPRLARLSENLARLKLTA-DVREADAAS 319 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FDA+L+DAPC++TGT+RRHPD+ W + D+ A Q L+ + +K GG+ Sbjct: 320 LKAG-PFDAILLDAPCTATGTLRRHPDIAWAKRPSDVATLAAVQAGLIDHALDLLKSGGL 378 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL+ ++ E V +VL + VE VPL + +A ++PEG +R P L Sbjct: 379 LVYATCSLEPEEGEAQVARVLAAR-NDVERVPLKPEEMEG--LAPYITPEGDLRTLPCDL 435 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + SG+DGFFA LR+ Sbjct: 436 VRGEPERSGLDGFFAARLRK 455 >gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4] gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4] Length = 448 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 111/466 (23%), Positives = 187/466 (40%), Gaps = 43/466 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + N R + +L + ++R L+D E L D+ L+ +V LR Sbjct: 1 MST-TNPRSAAFEILLRIDKERSYADILIDRELSSG---FLQGPDRGLLTELVYGVLRRQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +++ R + S+ LLR+ + QI YLD V A V+ V+ AK Sbjct: 57 GTLDYIINRFSKQKSERLERSVLVLLRIGLYQIFYLDRVPVSAAVNETVKLAK--VLAPR 114 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 + VN++LR RE+ ++ + P W G +++ Sbjct: 115 ASGFVNAVLRSADRERDDIAYPDKEKDPVGYLSTFYSHPSWLVAGWIGQLGFAEAESLAK 174 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221 A P + + E +L + + R S+ L F +G Sbjct: 175 AMAEPPPLTIRTNTLKTSREELMERLASEGVQCEATRFSPLGVRIITAGSVARLQSFRDG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 ++ VQD S+ + V VLD CAAPGGK + + + ++ A DV R+L Sbjct: 235 LFTVQDESSQLAVMFLSPEPGEKVLDACAAPGGKATHMAQLMGNSGEIIACDVIGRKLRL 294 Query: 279 LRCNLDRLHLYAEDI---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N RL + + F +L+DAPCS G IRR+P+ W + Sbjct: 295 IGENAARLGISCIKTVPLNTARPLNSIKDARFQRILLDAPCSGLGVIRRNPEGKWWKTAA 354 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+ + Q+ +L ++K GGI++++ CS ++++E V+ L V L Sbjct: 355 DVAELVRGQKTILENLAGYLKRGGILLYATCSTTREENEAVIDDFLSRHSDFV----LED 410 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++P+G R P GMDGFFA L+++ Sbjct: 411 LRVLFPAYGELITPQGCFRGWPH--------RQGMDGFFAARLKKI 448 >gi|222087916|ref|YP_002546454.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] gi|221725364|gb|ACM28520.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] Length = 469 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 225/428 (52%), Positives = 290/428 (67%), Gaps = 4/428 (0%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +LS V+ ++ L +LD E G+ A++ L D+ LVRAI+N LR LPRI+A + +L Sbjct: 44 KILSAVIDRKTPLDGMLDAEGGNPAYKALGDSDRALVRAILNSALRHLPRIEAAIASLLD 103 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S LP +L +L V AQ+LYLDV D++ VD+AVEQA +D NR FAKLVN+ILRR+ Sbjct: 104 SPLPEGARALHHVLVVGAAQMLYLDVPDHSAVDIAVEQANQDPRNRRFAKLVNAILRRIG 163 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 REK ++L + A + +P+WF RLE YG++ L ISD + P ID+TVK D E WA + Sbjct: 164 REKQDILSQGADVPAMPKWFLTRLEAAYGRQAALKISDTQLEPAAIDVTVKSDAEGWAKR 223 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 LN V+LPTGG+RL SI SL GFA+G WWVQDA+ASIP +LFG+L V+DLCAAP Sbjct: 224 LNGVVLPTGGVRLAAFEGSIPSLDGFADGEWWVQDAAASIPAKLFGSLAGQRVVDLCAAP 283 Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 GGKTAQLI++G KVTALD S RL++L NL RL L AE + D + P LFDA L+ Sbjct: 284 GGKTAQLILAGGKVTALDQSANRLKRLSGNLARLGLEAETV-VADMAKFQPDDLFDAALL 342 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCSSTGT RRHPDVLWT+ +DI K Q +LL ++ VKPGG+VVFSNCSLD ++ Sbjct: 343 DAPCSSTGTTRRHPDVLWTKGPEDIAKLTALQERLLRHALTLVKPGGLVVFSNCSLDPEE 402 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 E++V +VL + E V + W ++ A +SP G R TPDML G +SG+DG Sbjct: 403 GEDLVARVLSET-DMAERVAIKPEDWPGLEAA--ISPLGAFRTTPDMLPLSGGFASGLDG 459 Query: 433 FFAVALRR 440 FFAV LRR Sbjct: 460 FFAVVLRR 467 >gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424] gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424] Length = 452 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 123/460 (26%), Positives = 207/460 (45%), Gaps = 42/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L + +K LD + L D+ LV +V +R +D Sbjct: 7 NPRQLALIILRDIYQKEAYTDLALDQGIKRADLGNL---DRGLVTELVYGIVRRQRTLDE 63 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ L+ +L + + Q+ YLD + A V+ +VE AK++K + + +V Sbjct: 64 IISQLGTKKANQQPPDLRLILHIGLYQLRYLDQIPPSAAVNTSVELAKKNKLGK-LSGVV 122 Query: 125 NSILRRVSR----------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 N ILR+ R + + + + P W + + +G+E+ + + Sbjct: 123 NGILRQYDRIKEQGKDPLKFPSDPVNHLGVLHSFPNWIIQLWLDEFGQEQTEQLCEWFNQ 182 Query: 175 PLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 P ID+ V T K+ + +RL SI LPGF EG W Sbjct: 183 PAMIDIRVNLLKTTVEKVASIFSDVGVKVKPIPHLPQSLRLIGGTRSIQQLPGFEEGWWT 242 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 VQD+SA + L + ++D CAAPGGKT + + + A D RL K++ Sbjct: 243 VQDSSAQLVTHLLDPQPDEIIIDACAAPGGKTTHIAQLMGDRGTIWACDRVPSRLRKVQQ 302 Query: 282 NLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 N +RL L + I E D+ ++ D VL+DAPCS GT+ + PD+ W + + I + Sbjct: 303 NAERLQLNSIRICEGDSRHLTQFRETADRVLLDAPCSGLGTLHKRPDIRWRQTPEKIAEL 362 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +LL + ++VKP GI+V++ C+L+ ++E V+ L P P + Sbjct: 363 SQLQTELLEETATWVKPKGILVYATCTLNPLENERVIAAFLDRHPSWHIQTPSSDNTV-- 420 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A +P GWI++ P MDGFF V L + Sbjct: 421 ---AAFATPSGWIKVLPH--------QHQMDGFFMVKLVK 449 >gi|209883490|ref|YP_002287347.1| SUN protein [Oligotropha carboxidovorans OM5] gi|209871686|gb|ACI91482.1| SUN protein [Oligotropha carboxidovorans OM5] Length = 446 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 167/439 (38%), Positives = 252/439 (57%), Gaps = 7/439 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ ++ V+ KR +L L+ A + LS RD+ L+R +V LR Sbjct: 13 PGLAARRIAADIIDGVLHKRRTLDDQLEGAAQHPALKSLSDRDRALMRRLVATVLRRRGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + +L +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LAYLLSRLLDRGVPSDAPRAQSALMIGAAQILWMDVPDHAAVDLSVRLVQADRRAAKYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE I L+ +P W R YG++ A++ A +DLT Sbjct: 133 LVNAVLRRCAREGIPLIDESTDEMIDLPPWLATRWIKAYGEDTARAMARAIGHEPPLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E WA +L+ LPTG +R L S+ LPGF+EG WWVQDA+A++P +LFG + Sbjct: 193 VKSDSENWATRLHGETLPTGTVR-TLLHGSVTMLPGFSEGAWWVQDAAAALPARLFGDIA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V DLCAAPGGKTAQL +GAKVTA+D S RL +L+ N RL L A + Sbjct: 252 GKPVADLCAAPGGKTAQLAQAGAKVTAVDRSAGRLARLKENFARLGLEATYV--AADATE 309 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FDA+L+DAPC +TGTIRRHPDV W ++ D+ + Q +LL + ++ +KPGG + Sbjct: 310 WEAGPFDAILLDAPCMATGTIRRHPDVAWLKNEADLDALSALQARLLRKSVTLLKPGGTL 369 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E+ + +L + P ++ P+ ++ + ++ +SP G +R P L+ Sbjct: 370 VYCTCSLEPEEGEQAIAALLEAEP-QMKRRPVEAS--ELAGLSELISPMGDVRTLPCHLQ 426 Query: 422 KIDGVSSGMDGFFAVALRR 440 D SG+DGF+A L + Sbjct: 427 HDDPKLSGLDGFYAARLVK 445 >gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2] gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2] Length = 491 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 124/462 (26%), Positives = 196/462 (42%), Gaps = 40/462 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V L+ + L + D LV +V T++ +D Sbjct: 40 PRELALDTLVKVAETGAYSNLQLNRVLQE---AQLQRADAALVTELVYGTIQRQLTLDHW 96 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + + + QLLR+S Q+LYLD + +A V+ AV AKR + ++ + +VN Sbjct: 97 LGKFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKR-RGHQGISGMVN 155 Query: 126 SILRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 ILR + R + + +I+ PEW ER YG E AI + P Sbjct: 156 GILRSIDRNRAELTVDAIADKNPVVQISVRYSYPEWLVERWVKAYGAETAEAICASGNEP 215 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGI---------RLKELPESIVSLPGFAEGVWWVQ 226 + + V + L+ + G + ++ GF +G+W +Q Sbjct: 216 PHASVRVNPLRSSRNEVLSLLTEQGGDAEASRLAPAGIVVRRGGNLADTEGFRDGLWTMQ 275 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + ++ + VLD CAAPGGKT + + KV A D+ + + + Sbjct: 276 DESSMLVAEVVAPKAGMQVLDCCAAPGGKTTHMAELMSGKGKVYANDLHPHKRQLIVDQA 335 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL L + I DA + DAVL+DAPCS G IRR P++ WT+ D+ + Sbjct: 336 VRLGLQNIEAITEDAGKLGERFAPASIDAVLLDAPCSGFGVIRRKPEIKWTKTAGDVAEI 395 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QR+LL VKPGG +V+S C+++ ++EE V L+ P Sbjct: 396 AAIQRRLLGAVAGLVKPGGTLVYSTCTIESTENEEQVAVFLKEHPEFQLDAEWPEEALAP 455 Query: 401 IDMAMALSP--EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +G ++ P G DGFF LRR Sbjct: 456 LREKGIIDSSFDGQAQLLPHHY--------GSDGFFIARLRR 489 >gi|153008423|ref|YP_001369638.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151560311|gb|ABS13809.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188] Length = 453 Score = 292 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 196/448 (43%), Positives = 273/448 (60%), Gaps = 10/448 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 9 RPGLAARLCAARLLGAVIEKNTSLDGLTDNTHGHPQYLALEPRDRALVRAILGSALRNRG 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V++AQI YL++ D++ VDLAVE A D NR +A Sbjct: 69 SIERAINKRLDRPLPENAVALKHLLHVAIAQIFYLNLPDHSAVDLAVEAANADPRNRKYA 128 Query: 122 KLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR+SR K + + +PEWF + + + YG E+ AI ID Sbjct: 129 GLVNALLRRLSRNKERALAHTLEPETNVPEWFAKSITDAYGAEKAAAILAMHAYEPPIDF 188 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L G + Sbjct: 189 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGDWWVQDVAASLPARLMGDI 248 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DLCAAPGGKTAQL++ GA VTALD+S+ RL++LR NL+RL A+ + + D Sbjct: 249 KGKRVADLCAAPGGKTAQLVLQGANVTALDLSENRLKRLRGNLERLGFEAKTV-ATNLMD 307 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG+ Sbjct: 308 FQPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGV 367 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID--MAMALSPEGWIRITPD 418 +VFSNCSL + EE+ +K +P+ +E P+ S++ + ++ EG++R TP Sbjct: 368 IVFSNCSLHPLEGEEMARKA-AENPL-LEPFPITEQDCPSLNGLLDGLVTAEGFLRSTPA 425 Query: 419 MLE----KIDGVSSGMDGFFAVALRRLI 442 L + + +GMDGFFA +R Sbjct: 426 DLPPDRFEGNPHMAGMDGFFAARFKRRA 453 >gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR] gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR] Length = 451 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 103/465 (22%), Positives = 196/465 (42%), Gaps = 41/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+S AR ++ ++ V R+ L+ ++D+ + +V TL+ L Sbjct: 1 MRS---ARKLALEVIYQVDREGAYSNIALNKVLEKYQP---EKKDRAFITELVYGTLKRL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D + + L ++ ++R+ + QI ++D V + A + +V A++ ++ Sbjct: 55 NTLDWIAGRFVSRPLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLARKF-GHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 K VN +LR V R K + + P W +G E + Sbjct: 114 TVKFVNGVLRNVVRHKDRVKWPDKDAEPVEYLSIHYSHPTWMVSLWIEEFGFEETEKLCR 173 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEG 221 A + + L + +SI SL A+G Sbjct: 174 ANNETPPNSIRTNTLKISRDELIGVLAGEGVECRKGEFAPETINISGFKSIASLKSHAQG 233 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 ++ VQD S+++ + V+D C+APGGKT L + + ++ A D+ + ++ Sbjct: 234 LYLVQDESSTMVGHIVAPKPGSKVIDACSAPGGKTTHLAQLMNNQGRILAGDIHQHKMGL 293 Query: 279 LRCNLDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 ++ N RL + + +DA K+ D VLVDAPCS G +RR P++ W + + Sbjct: 294 IKENCSRLGVNIIEPALVDARELHKEYKEWADFVLVDAPCSGLGVLRRRPELRWRKTVNR 353 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + Q +L VK GG++V+S C+++++++ ++V+ L ++P L L Sbjct: 354 FDELTALQLAILRSAAQCVKAGGVLVYSTCTVNRRENLDLVRSFLENAP-EFRLDSLLPL 412 Query: 397 YWKSIDMAMALS-PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + D + EG+I+ P + G DGFFA + + Sbjct: 413 FPDTCDRTKFPTAAEGYIQFLPHV--------HGTDGFFAARMVK 449 >gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2] gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2] Length = 450 Score = 292 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 102/464 (21%), Positives = 203/464 (43%), Gaps = 40/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R + +L + + L+ D A L D+ + +V TL++ Sbjct: 1 MKLDLP-RETALKILYDINKSGAYSNIALNKYLEDKALSGL---DKAFITELVYGTLKWR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ID ++D + + + +LR+ V QI+Y+ + + A + +V AKR + Sbjct: 57 LSIDYIIDQFSSVKINKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRY-GHSA 115 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 ++ VN++LR +L+ ++ P+W ++ + +G+ + Sbjct: 116 SSRYVNAMLRNVARSKNKIVYPDRNKDLISYLSIKYSHPDWMVKKWLDRFGESFTEELLK 175 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEG 221 + + + V E + L P S+ + F +G Sbjct: 176 SNNETAPLTVRVNSLKTTREELENTLKKEGFETESAKYIENALTINNPSSLTKMEAFVKG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 + VQD S+ + ++F ++D+C+APGGKT + + + ++ A D+ + ++ Sbjct: 236 FFQVQDESSMMVGRIFDPKPGEFIVDVCSAPGGKTTHIAELMGNRGQIIARDIHEHKIRL 295 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + RL + DA + D VLVDAPC+ G IRR PD+ W R+++D Sbjct: 296 INEASSRLGIDIIKAEIFDASEQDASLTDKADRVLVDAPCTGLGIIRRKPDIKWARNSND 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + Q K+L +VKPGG++V+S C+++ Q++EE+V+K L+ + + ++ Sbjct: 356 LNEIVKLQEKILNASSKYVKPGGVLVYSTCTIEPQENEEMVKKFLKDNK-EYTMEDISKQ 414 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +G+I++ G+DGFF +R+ Sbjct: 415 LPDGLV--KDTTKDGYIQLY--------TNRDGIDGFFISKMRK 448 >gi|163757448|ref|ZP_02164537.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea phototrophica DFL-43] gi|162284950|gb|EDQ35232.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea phototrophica DFL-43] Length = 446 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 200/438 (45%), Positives = 265/438 (60%), Gaps = 6/438 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR ++ LL+ V R SL LLD G+ AF L +D++LVRAI+ LR L Sbjct: 11 KPGLAARQAATRLLAAVTESRASLDGLLDPAGGNPAFTGLGPQDRLLVRAILLSALRHLR 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 IDA +D ++ S LP +L+QLLRV AQIL+LDV D A VDLAV QA D NR FA Sbjct: 71 VIDAYIDELVTSPLPEGAKALRQLLRVGAAQILFLDVPDRAAVDLAVSQANGDPRNRRFA 130 Query: 122 KLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR+ REK + A + P+WF R++N Y + +I P IDL Sbjct: 131 GLVNALLRRMGREKESRLSELTATVPPFPDWFVSRIQNAYS-QEADSILSMLSVPPAIDL 189 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D WA +L +LPTG +R+ + L G+ G WWVQDA+ASIP Q+F L Sbjct: 190 TVKTDPAGWAERLGGTVLPTGSVRIARPAGPVTDLEGYDGGDWWVQDAAASIPAQMFSRL 249 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + L V DLCAAPGGKTAQL ++GA+VTA D S RLE+L+ NL RL L A D Sbjct: 250 DGLEVADLCAAPGGKTAQLALAGARVTACDQSANRLERLKGNLSRLGLE-VSTHLSRAQD 308 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + + FD VLVDAPCSSTGT+RRHPD+ +T+ +DI + QR LL V+P G Sbjct: 309 FKAPEGFDGVLVDAPCSSTGTVRRHPDIPYTKGPEDITRLTQVQRALLDHAAGLVRPKGE 368 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCSLD ++ E +VQ L P + P++++ W ++ A ++ G +R P ML Sbjct: 369 LVFSNCSLDPEEGELMVQGFLADHPSW-RIKPVDASRWPGMEAA--ITELGEVRTHPAML 425 Query: 421 EKIDGVSSGMDGFFAVAL 438 D +G+DGF+AV L Sbjct: 426 SDDDPAQAGLDGFYAVVL 443 >gi|218460752|ref|ZP_03500843.1| RNA methyltransferase - sun protein [Rhizobium etli Kim 5] Length = 466 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 222/423 (52%), Positives = 288/423 (68%), Gaps = 4/423 (0%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 46 VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 105 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA +D NR FAKLVN++LRR+ REK E Sbjct: 106 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKEE 165 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L I ++ +P WF RLE YG+E LAIS + + P IDLTVK D E WA +LN V Sbjct: 166 VLAEIGKVAPMPSWFLARLEKAYGREAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVA 225 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 LPTGG+RL I SL GF EG WWVQDA+ASIP +LFG L DLCAAPGGKTA Sbjct: 226 LPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLAGKRAADLCAAPGGKTA 285 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QLI++G VTALD S+ RL +LR NLDRL L AE + D + P + FDA+L+DAPCS Sbjct: 286 QLILAGGAVTALDQSESRLRRLRSNLDRLGLTAETV-AADLTTFKPPEGFDAILLDAPCS 344 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 STGT RRHPDVLWT+ DDI + A Q +LL ++ + P G++VFSNCSLD + EEVV Sbjct: 345 STGTTRRHPDVLWTKGPDDIARLAALQERLLRHALTLLTPFGMLVFSNCSLDPAEGEEVV 404 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +VL + +E VP+N+ W ++ A ++P G R P ML+ +G++SG+DGF+A Sbjct: 405 ARVLSDT-DAIERVPINAGDWPGLEAA--ITPLGEFRTLPTMLKMPEGIASGLDGFYAAV 461 Query: 438 LRR 440 LRR Sbjct: 462 LRR 464 >gi|78221293|ref|YP_383040.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter metallireducens GS-15] gi|78192548|gb|ABB30315.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter metallireducens GS-15] Length = 446 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 125/462 (27%), Positives = 196/462 (42%), Gaps = 40/462 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + N R + +L V R R LLD E L+ D+ L+ +V LR Sbjct: 2 TRSNPRRTALDILLRVERDRAFAEQLLDRELS---LGTLTGPDRGLLTELVYGVLRRQGT 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D ++D S + + ++ +LR+ + Q+ +LD + A V+ +V AK A Sbjct: 59 LDFLVDAFAASRSGKLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAKAV--APRAA 116 Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 VN++LRR RE+ L IA P W E+ G ++ A Sbjct: 117 GFVNAVLRRADRERDSLPWPDRGADPAAYIAVRHSHPRWLVEQWIEQLGIPEAEELAVAM 176 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVW 223 + + V E + +L A + ++ +LPGFAEG++ Sbjct: 177 AEQAPLTIRVNTLKTTREAFMEELAAAGITAEPTVWAPHGVRILSRTAVTTLPGFAEGLF 236 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD S+ + +LD+CAAPGGK L + + +V A D+S ++L + Sbjct: 237 TVQDESSQLAAFFLDPQPGERILDVCAAPGGKATYLAQLMENRGEVLACDISAKKLRLVA 296 Query: 281 CNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL + + DA + FD +L+DAPCS G IRR+P+ W + DD+ + Sbjct: 297 EAAARLGIGIIRTMAGDATKPGAGEPPFDRILLDAPCSGFGVIRRNPEGKWWKTPDDLAR 356 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR +L ++PGG++++S CS + E+VV L V L Sbjct: 357 LAATQRNILAAVAPRLRPGGVLLYSTCSTMVAEDEDVVDDFLSRHEDFV----LEDLNAI 412 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S D + G R P GMDGFFA +R+L Sbjct: 413 SPDFPGQFTGRGHFRSWPH--------RHGMDGFFAARIRKL 446 >gi|85714014|ref|ZP_01045003.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A] gi|85699140|gb|EAQ37008.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A] Length = 454 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 168/442 (38%), Positives = 251/442 (56%), Gaps = 7/442 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ R ++ +L ++ KR +L L+ + L+ RD+ L+R +V LR L Sbjct: 16 APGLATRRTAADILDGILHKRRTLDEQLEGATAHPGLKALADRDRALMRRLVATILRRLG 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + +L +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 76 TLGHLLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYA 135 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR +RE L++ + S +P W R YG+ AI+ A +DL Sbjct: 136 GLVNAVLRRCAREGQALIEEVRSESLDVPPWLMARWSRHYGENTAKAIAAAINYEPALDL 195 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D WA +L+ LPTG +R L S+ LPGF++G WWVQDA+A++P +LFG + Sbjct: 196 TVKADAAYWATRLHGEALPTGTVR-TSLQGSVTMLPGFSDGQWWVQDAAAALPARLFGDI 254 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY--AEDIIEMDA 298 + ++DLCAAPGGKTAQL +GA VTA+D S R+ +LR NL RL L + ++ Sbjct: 255 SGRRIIDLCAAPGGKTAQLAQAGADVTAMDRSPNRVARLRENLGRLSLTVRSIVADAIEW 314 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FD VLVDAPCS+TGTIRRHPDV W + DI Q++LL + I+ +KPG Sbjct: 315 QNDVGVDSFDGVLVDAPCSATGTIRRHPDVAWLKQESDIGALTALQQRLLKKAITLLKPG 374 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +++ CSL+ ++ E+VV +L S P + VP++ A + + ++P G +R P Sbjct: 375 GTLIYCTCSLEPEEGEQVVAALLASEPG-IRRVPVSGA--EVAGLTDIVTPAGDLRTLPC 431 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 L D G+DGF+A L + Sbjct: 432 HLPHDDPTLGGLDGFYAARLTK 453 >gi|86359687|ref|YP_471579.1| RNA methyltransferase - sun protein [Rhizobium etli CFN 42] gi|86283789|gb|ABC92852.1| probable RNA methyltransferase - sun protein [Rhizobium etli CFN 42] Length = 464 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 223/423 (52%), Positives = 289/423 (68%), Gaps = 4/423 (0%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 44 VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 103 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA +D NR FAKLVN++LRR+ REK E Sbjct: 104 GARALHHVLAIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDE 163 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L RI ++ +P WF RLE YG++ LAIS + + P IDLTVK D E WA +LN V Sbjct: 164 VLARIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVA 223 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 LPTGG+RL I SL GF EG WWVQDA+ASIP +LFG L+ DLCAAPGGKTA Sbjct: 224 LPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTA 283 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QLI++G VTALD S+ RL +LR NLDRL L AE + D + P + FDA+L+DAPCS Sbjct: 284 QLILAGGAVTALDQSESRLRRLRSNLDRLALKAETV-AADLMTFKPSEGFDAILLDAPCS 342 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 STGT RRHPDVLWT+ DDI + A Q +LL ++ +KP G +VFSNCSLD + EEVV Sbjct: 343 STGTTRRHPDVLWTKGPDDIARLAALQERLLRHALTLLKPLGTLVFSNCSLDPAEGEEVV 402 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +VL + +E V +N+ W ++ A ++P G R P ML+ DG++SG+DGF+A Sbjct: 403 ARVLSDT-NAIERVAINAGDWPGLEAA--ITPLGEFRTLPTMLKMPDGIASGLDGFYAAV 459 Query: 438 LRR 440 LRR Sbjct: 460 LRR 462 >gi|327191218|gb|EGE58261.1| putative RNA methyltransferase - sun protein [Rhizobium etli CNPAF512] Length = 464 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 216/423 (51%), Positives = 285/423 (67%), Gaps = 4/423 (0%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 44 VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 103 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA +D NR FAKLVN++LRR+ REK Sbjct: 104 GARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDA 163 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L I ++ +P WF RLE YG++ LAIS + + P IDLTVK D E WA +LN V Sbjct: 164 VLAEIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPGAIDLTVKSDAEGWAKRLNGVA 223 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 L TGG+RL I SL GF EG WWVQDA+ASIP +LFG L+ DLCAAPGGKTA Sbjct: 224 LLTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTA 283 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QLI++G VTALD S+ RL +LR NLDRL L AE + D + P + FDA+L+DAPCS Sbjct: 284 QLILAGGTVTALDQSESRLRRLRSNLDRLGLKAETV-AADLTTFKPAEGFDAILLDAPCS 342 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 STGT RRHPDVLWT+ +DI + A Q +LL ++ +KP G +VFSNCSLD + EEVV Sbjct: 343 STGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPLGTLVFSNCSLDPAEGEEVV 402 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +VL + +E V +++ W ++ A ++ G R P ML+ +G++SG+DGF+A Sbjct: 403 ARVLSDT-DAIERVAISAGDWPGLEAA--ITSLGEFRTLPTMLKMPEGIASGLDGFYAAV 459 Query: 438 LRR 440 LRR Sbjct: 460 LRR 462 >gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425] gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425] Length = 443 Score = 291 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 199/457 (43%), Gaps = 40/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ L V + ++ +R++ L +V +R +D Sbjct: 1 MNARQLAFITLQAV-HRGAYADVAVERSLRQHPLT--EERERRLATELVYGCVRRQRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 A++D + ++ L+ LL + + Q+ YL+ + A V VE K + A Sbjct: 58 ALVDQLAKKPARQQPPDLRTLLHLGLYQLRYLNHIPANAAVHTTVELVK-HRGLAGLAGF 116 Query: 124 VNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR+ R+ + +Q++A + P+W G + Sbjct: 117 VNGLLRQYIRQSAGGDPLSLPTDPVQQLALLHSYPDWIVANWMEQIGTTETDQLCQWLNR 176 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWW 224 P IDL + IE + + + RL E +I LPGFA+G W Sbjct: 177 PPSIDLRINPLQTSIEQVGSAFQSAGVSVQPLAGLPQGLRLTEPSGAIEQLPGFAQGWWS 236 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 VQDASA + L ++D CAAPGGK+ + I V A D + RL+KL Sbjct: 237 VQDASAQLVSHLLNPQPGEVIIDACAAPGGKSTHIAELIGDKGIVWACDRTPSRLKKLEQ 296 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N RL L + I + D+ D VL+DAPCS GT+ RH D W + + + + A Sbjct: 297 NRQRLKLNSIRICQGDSRMSEFTAQADRVLLDAPCSGLGTLHRHADARWRQTPESVAQLA 356 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL ++VKPGG +V++ C+L ++E V+Q+ L P P + + Sbjct: 357 QLQTELLHHTATWVKPGGTLVYATCTLHPTENEAVIQQFLAHHPQWQIQAPRHPPF---- 412 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 A L+P+GWI++ P MDGFF V L Sbjct: 413 -SADWLAPQGWIKVWPH--------RHQMDGFFMVRL 440 >gi|284050071|ref|ZP_06380281.1| Fmu, rRNA SAM-dependent methyltransferase [Arthrospira platensis str. Paraca] gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira platensis NIES-39] Length = 447 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 117/462 (25%), Positives = 199/462 (43%), Gaps = 47/462 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + R+ +LD + L D+ L +V R +DA Sbjct: 4 NPRQLAFVTLRDIQRRGAFADIVLDEKLR---QADLKDADRRLGTELVYGCTRRRRTLDA 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D + ++ L+ +L + + Q+ + ++ A V+ V+ K + + V Sbjct: 61 IIDRLAKKPAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDLTKVNNLS-GLGGFV 119 Query: 125 NSILRRVSREKIELLQRIAGI-------------SIIPEWFKERLENFYGKERVLAISDA 171 N +LR+ R + + P+W + G+ + + D Sbjct: 120 NGLLRQYLRLVEAGNSLESILQLPENPVSRLGILHSFPDWMIKFWLEELGESQTQQLCDW 179 Query: 172 CISPLYIDLTVKF------DIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEG 221 +DL + +ET + + P G RL +I +LPG+ +G Sbjct: 180 FNQSPSLDLRINPLSTTLETVETAFQQQEIIGSPLPKLPQGWRLSSGVGAIRNLPGYDQG 239 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQDASA + + ++D CAAPGGKT + + KV A+D S RL+ Sbjct: 240 WWTVQDASAQLVGYIVDPQPGEIIIDACAAPGGKTTHIAELMGDNGKVIAIDRSPGRLKP 299 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L+ N++RL L + + D+ + + D VL+DAPCS GT+ R D W + D I Sbjct: 300 LKQNINRLKLRSIQVEVGDSRHFPQYNNMADRVLLDAPCSGGGTLHRRSDSRWRQTPDQI 359 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + + Q +LL +VKPGG++V++ C+L Q++E + L P VP Sbjct: 360 RQLSQLQAELLEMVSHWVKPGGVLVYATCTLYPQENEWAIASFLSRHPSWRVEVP----- 414 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 ++D+ + + EGW++I P MDGFF LR Sbjct: 415 --NLDLPVEPTKEGWLKIWPH--------RHQMDGFFIAKLR 446 >gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803] gi|2500952|sp|P72943|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803] Length = 446 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 116/460 (25%), Positives = 193/460 (41%), Gaps = 40/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ++AR ++ +L + R+ +D LS D+ +V +R +D Sbjct: 2 ISARQLAFLILRDINRRDSYTDVAIDRALQKHP---LSPPDRRFCTELVYGVVRRQRTLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + ++ L++++++ + Q+ YLD V A V+ V+ AK + + +K+ Sbjct: 59 CLIEQLGDRPIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKAN-GLKGLSKV 117 Query: 124 VNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LRR R + + + P+W E E +GK ++ Sbjct: 118 VNGMLRRYQRAEEQGKNILDQEKISLGEQYSFPDWLMELFEQTWGKAETESLCAYFNQNP 177 Query: 177 YIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 +DL + + A+ G+RL +I LPGFAEG W VQ Sbjct: 178 SLDLRINPLKTSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQ 237 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 DASA Q+ ++ D+CAAPGGKT + + ++ A D RL+KL Sbjct: 238 DASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQ 297 Query: 284 DRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL L + I E D P +L D L+D PCS GT+ R+PD+ W + I Sbjct: 298 QRLGLTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATL 357 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q+ LL VK GG +V+S C+L+ ++E +++ L+ W S Sbjct: 358 LPLQQALLKAIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQDHEDWRS----EPFEWTS 413 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G + I P DGFF L++ Sbjct: 414 PQGQTNSVTSGMLTILPHH--------HHQDGFFIANLKK 445 >gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328] gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328] Length = 458 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 198/462 (42%), Gaps = 47/462 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + R+ +LD + L D+ L +V R +DA Sbjct: 4 NPRQLAFVTLRDIQRRGAFADLVLDEKLR---QADLKDADRRLGTELVYGCTRRRRTLDA 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D + ++ L+ +L + + Q+ + ++ A V+ V+ K + + V Sbjct: 61 IIDRLAKKPAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDLTKVNHLS-GLGGFV 119 Query: 125 NSILRRVS-------------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 N +LR+ + + R+ + P+ + G+ + + D Sbjct: 120 NGLLRQYLRLLEAGNSLESILQLPENPVSRLGILHSFPDSMIKFWLEELGESQTEQLCDW 179 Query: 172 CISPLYIDLTVKF------DIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEG 221 +DL + +ET + + P G RL +I +LPG+ +G Sbjct: 180 FNQSPSLDLRINPLSTTLETVETAFQQREIIGSPIPKLPQGWRLSYGVGAIANLPGYDQG 239 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQDASA + + ++D CAAPGGKT + + K+ A+D S RL+ Sbjct: 240 WWTVQDASAQLVGYVVDPQPGEIIIDACAAPGGKTTHIAELMGDNGKIIAIDRSPGRLKP 299 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L+ N+ RL L + + D+ + D VL+DAPCS GT+ R D W + D I Sbjct: 300 LQQNIKRLKLRSIQVEVGDSRHFPQYNNTADRVLLDAPCSGGGTLHRRSDARWRQTPDQI 359 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + + Q +LL +VKPGG++V++ C+L Q++E + L P VP Sbjct: 360 RQLSQLQAELLEMVSHWVKPGGVLVYATCTLHPQENEWAIASFLSRHPTWRVEVP----- 414 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +ID+ + + EGW++I P MDGFF LR Sbjct: 415 --NIDLPVEPTKEGWLKIWPH--------RHQMDGFFIAKLR 446 >gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32] gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32] Length = 448 Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 119/466 (25%), Positives = 196/466 (42%), Gaps = 43/466 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S N R + +L + ++R L+D E A + D+ L+ +V LR Sbjct: 1 MSSS-NPRSAAFEILLRIDKERSYADILIDRELSAGALQG---PDRGLLTELVYGVLRRQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ L R + S+ LLR+ + Q+ YLD V A V+ V+ AK Sbjct: 57 ATLDHIIRRFSSQRLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNETVKLAKVLV--PR 114 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 + +N++LR RE+ + A + P W G + ++ Sbjct: 115 ASGFINAVLRNADRERDHISYPDREKDPAAYLATVYSHPVWLAAAWIGQLGLDEAEMLAR 174 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221 A P I + + L+A + R L S+ L F +G Sbjct: 175 AMAEPPAITVRTNTLKTTRQQLMEILSAEGVQCETGRFSPMAIRINLSGSVSRLKSFRDG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 +++VQD S+ + G VLD CAAPGGK+ QL + ++ A DV R+L+ Sbjct: 235 LFFVQDESSQLAAMFLGPQAGERVLDACAAPGGKSTQLAQLMGDRGEILACDVIGRKLKL 294 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N RL + + + +D + D +L+DAPCS G IRR+P+ W + Sbjct: 295 VDENAARLGISSIRTVLLDTARPLKSLERSPLDRILLDAPCSGLGVIRRNPEGKWWKSAA 354 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D++ A QR LL ++ GG ++++ CS +++E V++ L V + Sbjct: 355 DVIDLAKGQRALLENLAGHLRSGGSLLYATCSTAVEENEAVIEAFLSRHDEFV----IED 410 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+A +P G+ R P GMDGFFA L++ Sbjct: 411 LRLLFPDLAELFTPAGFFRAWPH--------RHGMDGFFAARLKKK 448 >gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110] gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110] Length = 452 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 118/464 (25%), Positives = 205/464 (44%), Gaps = 42/464 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K NAR ++ +L + R+ LD L+ D+ L +V +R Sbjct: 5 KKNTNARQLTLDILRHIDRQHTYTDIALDRSLT---QNNLNPSDRSLCTQLVYGIVRHQR 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D ++D + ++ L+++L + + Q+ YL+ + A V+ +V AK + NR Sbjct: 62 TLDTLIDQLGKKKAQQQPPDLRRILHIGLYQLRYLNHIPPSAAVNTSVNLAKDYQLNR-L 120 Query: 121 AKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + +VN ILR+ R+ +++IA P W E +G+E + Sbjct: 121 SGVVNGILRQYIRKSKESQDPLILPSNPIEKIAIQYSFPNWMIETWVKQWGEETTEKLCY 180 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAE 220 ID+ + ++T ++L +RL+ +I +LPGF E Sbjct: 181 WFNQTPTIDIRINPLKTTLQTLENQLIETGVNVTPLPPFPCTLRLQGKIGTIQTLPGFHE 240 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G W +QD+SA + L +++D CAAPGGKT + + V A D + RL+ Sbjct: 241 GHWTIQDSSAQLVSYLLDPQPGETIIDACAAPGGKTTHIAELMGDQGTVIACDRTPSRLK 300 Query: 278 KLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 K++ N RL L + I D D VLVD PCS GT+ RHPD+ W + + Sbjct: 301 KVQQNAQRLQLNSIQTILGDSRHFTQFIDQGDRVLVDVPCSGLGTLHRHPDIRWRQTPEQ 360 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + + Q+++L Q +VKP G +V++ C+L+ +++++++ L P Sbjct: 361 IQELSRLQQEILTQAAQWVKPQGTLVYATCTLNPTENQQIIETFLTHHSHWTIEPPSVDW 420 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ WI+I P DGFF V L++ Sbjct: 421 LFYP-----FVTSSKWIQILPH--------EHHTDGFFMVKLKK 451 >gi|86747213|ref|YP_483709.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2] gi|86570241|gb|ABD04798.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2] Length = 450 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 171/440 (38%), Positives = 251/440 (57%), Gaps = 6/440 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V++KR L L+ + L RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ +L +L +P + L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LEHLLARMLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE L+ +AG + +PEW R YG + AI+ A +D+T Sbjct: 133 LVNAVLRRCAREGHPLIDAVAGQALDVPEWLMARWRAHYGDDAAKAIALAISHEPSLDIT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D + WA +L +LPTG +R L S+ LPGF +G WWVQDA+A++P +LFG L Sbjct: 193 VKSDPDHWAGRLYGELLPTGTVR-TLLQGSVKMLPGFDDGQWWVQDAAAALPARLFGDLA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300 SV DLCAAPGGKTAQL +GA+V+A+D S R+ +LR NL RL L A + + + Sbjct: 252 GKSVADLCAAPGGKTAQLAQAGARVSAIDRSPARVARLRENLARLGLEAETAVADATEWR 311 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD VLVDAPC+STGTIRRHPDV W + DI + Q +LL + ++ +KPGG Sbjct: 312 SDAPGSFDGVLVDAPCASTGTIRRHPDVAWLKQESDIGALSAVQSRLLHKAVALLKPGGT 371 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ ++ E+VV +L + P L + +A ++ EG +R P L Sbjct: 372 LVYCTCSLEPEEGEQVVGALLDAEPGMRRL---PVEPAEVAGLAEIVTAEGDVRTLPSHL 428 Query: 421 EKIDGVSSGMDGFFAVALRR 440 D +G DGF+A L + Sbjct: 429 PHADPRLAGFDGFYAARLTK 448 >gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125] gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125] Length = 450 Score = 289 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 113/462 (24%), Positives = 202/462 (43%), Gaps = 36/462 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + R V+ L + + + LL+ + L RD L+ +V T++ Sbjct: 1 MAAK-SVREVALETLVQIEKSQAYSNLLLNQKIK---QANLEPRDIGLLTELVYGTVQRQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D + + + + ++ LLR+SV Q++YLD V +A++ AV AK+ + ++ Sbjct: 57 KTLDYYIASFVAKGKRKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKK-RGHKG 115 Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + LVN +LR + R+ + +R+A PEW +R + YG+E ++I + Sbjct: 116 ISGLVNGVLRSMQRQGMPPFAAIEDKVKRLAVEYSYPEWLVKRWIDQYGEEETVSICEEM 175 Query: 173 ISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P + V T L A + +I S F +G Sbjct: 176 LLPPKVTARVNVRKRTVEEALERLEHEGVQATNGVLSDDAIVVDKGTITSTRLFQDGELT 235 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + +LD CAAPGGK+ + + + +LD+ + +++ + Sbjct: 236 IQDESSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEE 295 Query: 282 NLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G IRR PD+ WT+ D+ Sbjct: 296 QAKRLGLDNIKAQTLDARKAREVFADEPFDRILVDAPCSGLGVIRRKPDIKWTKREADMK 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q +L VKPGG++++S C++D+ ++E+V+ + + + + Sbjct: 356 AIRNVQLDILSSVAKLVKPGGLLIYSTCTIDQLENEQVIAEFMEAH-GEFSIDDTVLDRL 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A EG + I P G DGFF L++ Sbjct: 415 PAAVQATCNIREGMVTILPHHF--------GTDGFFITCLKK 448 >gi|75674355|ref|YP_316776.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi Nb-255] gi|74419225|gb|ABA03424.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi Nb-255] Length = 450 Score = 289 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 173/442 (39%), Positives = 254/442 (57%), Gaps = 7/442 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR +++ +L V+ KR +L L+ + L+ RD+ L+R +V LR L Sbjct: 12 APGLAARRIAADILDGVLHKRRTLDEQLEGPTAHPGLKALADRDRALMRRLVATILRRLG 71 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + +L +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 72 TLGHLLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYA 131 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR +RE L++ + S P W R +YG+ AI+ A +DL Sbjct: 132 GLVNAVLRRCAREGQSLIEEVRSESLDTPSWLMARWSGYYGEGTAKAIAAAISHEPALDL 191 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK + WA +L+ LPTG +R L S+ LPGF+EG WWVQDA+A++P +LFG L Sbjct: 192 TVKANAAHWATRLHGETLPTGTVR-TSLHGSVTMLPGFSEGQWWVQDAAAALPARLFGDL 250 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+DLCAAPGGKTAQL+ +GA+VTA+D S R+ +LR NL RL L A ++ Sbjct: 251 RGRRVIDLCAAPGGKTAQLVQAGAEVTAIDRSPNRVARLRENLGRLSLDARSLVADAIEW 310 Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 FD VLVDAPCS+TGTIRRHPDV W + DI Q++LL + I+ ++PG Sbjct: 311 QDDVAGDGFDGVLVDAPCSATGTIRRHPDVAWLKQDSDIAALTALQQRLLNKAITLLRPG 370 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+ CSL+ ++ E+VV +L + + VP+++ + +A ++PEG +R P Sbjct: 371 GTLVYCTCSLEPEEGEQVVAALLA-TDTGIRRVPVSAD--EVAGLADIVTPEGDLRTLPC 427 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 L D G+DGF+A L R Sbjct: 428 HLAHDDPTLGGLDGFYAARLTR 449 >gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106] gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106] Length = 450 Score = 289 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 198/465 (42%), Gaps = 48/465 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L V R+ + LD LS ++ L +V +R +DA Sbjct: 4 NPRQLAFIILREVERRGVYADIALDENLRK---ADLSAVNRRLTTELVYGCVRRRRSLDA 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D ++ L+ +L + Q+ YL + A V+ +VE AK + + V Sbjct: 61 LIDQFAQKKSHQQPPDLRIILHLGFYQLYYLSQIPASAAVNTSVELAKTN-GLSGLSGFV 119 Query: 125 NSILRRVSREKIELLQRIA--------------GISIIPEWFKERLENFYGKERVLAISD 170 N ILR R++ + Q + P+W E N G E + Sbjct: 120 NGILREYLRQQEKQTQNRPILRLEDENLIQTLGNLYSFPDWILEYWLNQLGLEETEKLCQ 179 Query: 171 ACISPLYIDLTVK---FDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAE 220 IDL + +T +L + + +RL I +LPG+ + Sbjct: 180 WFNQSPTIDLRINALKTSRDTVETELKLAGINVTPIPHLSQALRLSGSIGEIQNLPGYRQ 239 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G W +QD+SA + ++D CAAPGGKT + + + A D +K RL+ Sbjct: 240 GWWSIQDSSAQWVSHILDPQPGEIIIDACAAPGGKTTHIAELMQDTGTILAFDRAKSRLK 299 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 K++ N +RL L + D + D VL+DAPCS GT+ R D W + Sbjct: 300 KVQQNQERLQLKSITTQLADIRELSEYNSCADRVLLDAPCSGLGTLHRRADARWRHTQQN 359 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + + Q +LL + ++VKPGG +V++ C++ ++E ++Q L + +P Sbjct: 360 VQELSELQTELLEKTATWVKPGGYLVYATCTIHPLENETIIQSFLSHNLNWEIDLP---- 415 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I + L+ EG++++ P MDGFF V L+R+ Sbjct: 416 ---EIPLQDVLTSEGYLKVWPH--------RQNMDGFFIVKLKRI 449 >gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C] gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C] Length = 452 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 119/460 (25%), Positives = 192/460 (41%), Gaps = 38/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ++AR ++ H+L V L+ + L D+ + TLR L +D Sbjct: 4 VSAREIALHVLKAVEADGAYANLALNRALEEFRPSKL---DRAFATELAYGTLRTLNTLD 60 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ L L + + +LR+ Q+ Y+D V A AVE AK+ A+ Sbjct: 61 WIVSRYLQQPLGDQTVWSRNILRLGAYQLFYMDKVPAGAACFEAVELAKKY-GTPGTARF 119 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR V+R K EL I+ P W +R G E +A+ A + Sbjct: 120 VNGVLRNVARHKDELQFPDPETDLVTHISLKYFHPTWLVKRWLTELGPEETIALCQANNT 179 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWV 225 + V D ++ A +L L R S+ +LP F +G++ + Sbjct: 180 IPPNTIRVNTLRVDRDSLAVRLEQEGLTVRKTRFAPEGLEIGGFVSMRALPSFQQGLFQI 239 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + + +LD C+APGGKT L + + + ALD+ + +L+ + N Sbjct: 240 QDESSMLVAHAVNPARGVRILDACSAPGGKTTHLAQLMENEGIIKALDIHQHKLKLVSDN 299 Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + + +DA D + D VLVDAPCS G +RR PD W ++ I Sbjct: 300 CRRLGIDNVETELLDARDLPGEFEGWADFVLVDAPCSGLGVLRRRPDARWRKEPGQITGL 359 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L V+ GG++V+S C++ +++ VQ L P + N + Sbjct: 360 VRLQEAILAGAAQCVRAGGVLVYSTCTITYEENLGQVQSFLAHHPDFLLE---NLRPFLP 416 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G++ I P GMDGFF +RR Sbjct: 417 AGLGEEQMARGYLEIFPH-------THEGMDGFFIARMRR 449 >gi|91975197|ref|YP_567856.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5] gi|91681653|gb|ABE37955.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5] Length = 450 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 172/441 (39%), Positives = 258/441 (58%), Gaps = 6/441 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR +++ +L V++KR +L L+ + L RD+ L+R +V LR L Sbjct: 12 TPGLAARRIAADILDGVLQKRRTLDEQLEGPAAHPGLKTLPDRDRALMRRLVATILRRLG 71 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ++ +L +L +P + L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 72 TLEHLLARMLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYA 131 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR +RE L++ +AG + +PEW R YG++ AI+ A +D+ Sbjct: 132 GLVNAVLRRCAREGQPLIEEVAGQALDVPEWLMARWRAHYGEDAAKAIAVAISHEPSLDI 191 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA +L +LPTG +R L S+ LPGF +G WWVQDA+A++P +LFG L Sbjct: 192 TVKSDPQHWAGRLYGELLPTGTVR-TLLQGSVKMLPGFEDGEWWVQDAAAALPARLFGDL 250 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF 299 SV DLCAAPGGKTAQL +GA+V+A+D S R+ +LR NL RL L A + + + Sbjct: 251 AGKSVADLCAAPGGKTAQLAQAGARVSAIDRSPARVARLRENLARLSLEAETGVADATEW 310 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD VLVDAPC+STGTIRRHPDV W + DI + Q +LL + + +KPGG Sbjct: 311 RSDAPGSFDGVLVDAPCASTGTIRRHPDVAWLKQESDIGALSAVQSRLLEKAAALLKPGG 370 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ E+ + K+L + P + VP+ A + +A ++P+G +R P Sbjct: 371 TLVYCTCSLEPEEGEQAIAKLLAAEP-QMRRVPVEPA--EVAGLADIVTPQGDLRTLPSH 427 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L D +G DGF+A L + Sbjct: 428 LPHADPRLAGFDGFYAARLTK 448 >gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8501] gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH 8501] Length = 452 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 122/468 (26%), Positives = 215/468 (45%), Gaps = 45/468 (9%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M++ + NAR ++ +L + RK L+ S LS D+ L +V + Sbjct: 1 MRNKLSTSNARQLALKILLKIDRKNSYTDVALNRALNQS---NLSSSDRSLCTELVYGII 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 R +D+++D + ++ +L+++L + + Q+ YLD + A V+ +V+ AK +K Sbjct: 58 RHQRTLDSLIDQLGKKKAQQQPPNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKDNKL 117 Query: 117 NRHFAKLVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVL 166 + + +VN ILR+ R + A P+W E +G+E Sbjct: 118 -QRLSGVVNGILRQYIRSIQGNHDPLILPNDTLKKLAIQYSFPDWIIETWLQKWGEETTE 176 Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLP 216 + ID+ V ++ET +L + +RLK +I +LP Sbjct: 177 KMCHWFNQSPNIDIRVNPLKTNLETLQTQLTSAGVNVTPLGRFPCALRLKGKIGTIPTLP 236 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 GF++G W VQD SA + +++D CAAPGGKT + + + A D + Sbjct: 237 GFSQGHWTVQDTSAQLVSYFLDPQPGETIIDACAAPGGKTTHIAELMGDQGTIFACDRTP 296 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+K++ N RL L + + D+ D VLVD PCS GT+ RHPD+ W + Sbjct: 297 SRLKKVQENAQRLELNCIETVVGDSRYLQQFINKGDRVLVDVPCSGLGTLHRHPDIRWRQ 356 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++I + Q ++L Q +VKP G +V+S C+L+ +++E++Q L + ++ P Sbjct: 357 TPENIRELTSLQLEILNQAAQWVKPQGTLVYSTCTLNPPENQEIIQTFLSTHSHW-KIEP 415 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 N + + ++ WI++ P + DGFF V L++ Sbjct: 416 PNPHWA----FSPFVTSSQWIQMLPHKQDS--------DGFFMVKLKK 451 >gi|49476251|ref|YP_034292.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1] gi|49239059|emb|CAF28362.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1] Length = 447 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 200/445 (44%), Positives = 275/445 (61%), Gaps = 9/445 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R VS LL V+ K+ SL+ L D EYG + LSQRD++L RAI+ LR + Sbjct: 7 PGLAVRQVSVRLLGVVLDKKTSLSGLTDNEYGHPQYLGLSQRDRLLCRAILAAALRHRGQ 66 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L L LP + SLQ LL +S AQILYLD+ D+A +DLAV AK D F+ Sbjct: 67 ITDALRRFLKRPLPSQALSLQHLLHISAAQILYLDIPDHAAIDLAVRVAKLDPRMCRFSG 126 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 VN++LR V+RE + L Q+ I IP WF + L + YGKE+ I + +P +DLTV Sbjct: 127 GVNALLRNVAREAVFLRQKAPHIEGIPVWFGQLLVSTYGKEKTEQILEIQSAPPPLDLTV 186 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L V+LP G +RL L S+ LPG+ EG WW+QD +AS+P L G ++ Sbjct: 187 KSDSRGWAERLGGVVLPNGSVRLSRLEGSVSELPGYMEGAWWIQDFAASLPACLLGNIHG 246 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL + GA VTA+++S RL++L+ N++RLH E D ++ Sbjct: 247 KQVADLCASPGGKTAQLALQGADVTAIELSANRLKRLKENMERLHFS-VRCCEGDVKNFH 305 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 PK+LFDAVL+DAPCSSTGTIRRHPD+LWT+ +D++K A Q LL+ I+ +K GG +V Sbjct: 306 PKQLFDAVLLDAPCSSTGTIRRHPDILWTKSMNDVIKLAALQYDLLVAAIALLKKGGRIV 365 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 FSNCSL K++ E+++ ++L + L P+ + + MA LS EG +R TP Sbjct: 366 FSNCSLAKEEGEDLITRILSER-GDIVLEPILAE--EMGVMAHLLSVEGILRTTPADFCH 422 Query: 423 IDGVSS-----GMDGFFAVALRRLI 442 + + GMDGFFA LR++ Sbjct: 423 ENFDAEKNIFLGMDGFFAARLRKVA 447 >gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405] gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360] gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20] gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405] gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360] gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20] gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313] Length = 455 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 204/468 (43%), Gaps = 40/468 (8%) Query: 1 MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M++ + R + +L + K L+ F + D+ + IV TL++ Sbjct: 3 MRTKVDKVRETALKILYDINEKGAYSNISLNKYLNGQEFESI---DRAFITDIVYGTLKW 59 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID +++ + + + +LR+ + Q++Y D + +A + +V+ A + + Sbjct: 60 QYTIDYLIEKFSSVKIKKISPWIFNILRMGIYQLIYTDKIPFFAACNESVKLAAKY-GHA 118 Query: 119 HFAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 +K VN++LR + ++ P W + + +G+E + Sbjct: 119 ASSKYVNAVLRNIARNKENLPYPDRNNDTAHYLSVKYSHPVWMVKDWLDCFGEEFTEGLL 178 Query: 170 DACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAE 220 A + V + ++ + P ++ + FA+ Sbjct: 179 KANNEVAPFTVRVNDLKISKKELVDILTKDGFEVENGKYLDEALIIRNPSAVQKMDAFAK 238 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G + VQD S+ + ++ ++LD+C+APGGK+ + + + V + D+ + +++ Sbjct: 239 GYFQVQDESSMLVAKVLDPKPGETILDVCSAPGGKSTHIAQIMKNRGTVISRDIHEHKIK 298 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + +RL L DA K + D VLVDAPC+ G IRR PD+ W+++++ Sbjct: 299 LIEQAKERLGLEIIKTEVFDAAVLDGKLIEKIDRVLVDAPCTGFGIIRRKPDIKWSKNSE 358 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D + Q K+L +VK GG++V+S C+L+ +++E+ V++ + + L + Sbjct: 359 DKAEIVSLQHKILSTASKYVKDGGVLVYSTCTLEPEENEKAVERFIEENKDFY-LEDITE 417 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ A +G+I++ P++ G+DGFF +R+ + Sbjct: 418 FLPDALRKESA--GKGYIQLYPNI--------DGIDGFFIARMRKRSK 455 >gi|92115829|ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14] gi|91798723|gb|ABE61098.1| Fmu (Sun) [Nitrobacter hamburgensis X14] Length = 450 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 172/441 (39%), Positives = 245/441 (55%), Gaps = 7/441 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V+ K +L L+ + L+ RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLHKHRTLDEQLEGAAAHPGLKALADRDRALMRRLVATILRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + VL +L +P Q L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LGHVLSRLLDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE + + + IP W R YG+ AI+ A +DLT Sbjct: 133 LVNAVLRRCAREGQPLIDEVRSEALDIPPWLMTRWIANYGENTAKAIATAISHEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK WA +L+ +LPTG +R L + LPGF+EG WWVQDA+A++P +LFG L Sbjct: 193 VKAGAAQWATRLHGEVLPTGTVR-TALQGPVTMLPGFSEGRWWVQDAAAALPARLFGDLQ 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR--LHLYAEDIIEMDAF 299 V DLCAAPGGKTAQL +GA+VTA+D S R+ +LR NL R L A ++ Sbjct: 252 GRRVADLCAAPGGKTAQLAQAGAEVTAIDRSPNRVARLRDNLGRLSLGARALVADAVEWQ 311 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D FD VLVDAPCSSTGTIRRHPDV W + DI Q++LL + + +KPGG Sbjct: 312 DDAAGSGFDGVLVDAPCSSTGTIRRHPDVAWLKQDSDIAALTALQKRLLQKAFALLKPGG 371 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ E +V +L S V VP+ +A ++ ++P G +R P Sbjct: 372 TLVYCTCSLEPEEGEHLVGALLAS-EAGVRRVPIGAAEVAGLE--DIVTPAGDLRTLPCH 428 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L D SG+DGF+A L + Sbjct: 429 LPHDDPRLSGLDGFYAARLIK 449 >gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01] gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01] Length = 455 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 125/470 (26%), Positives = 206/470 (43%), Gaps = 43/470 (9%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK +R+ ++ +L + L +LD L+++D+ LV A+V L Sbjct: 1 MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALDKEP--GLTRKDRALVMALVYGVL 58 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 R RID ++ + L + + + +LR+ V Q+L+LD V VD +VE AK+ Sbjct: 59 RNRGRIDWIISSFSKTKLKKIQPEILNILRMGVFQLLFLDRVPPALAVDSSVEMAKK-AA 117 Query: 117 NRHFAKLVNSILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 +K VN +LR V + L+ I PEW +R +G E L Sbjct: 118 PVFVSKFVNGLLRNVERKGRGLQLPDFAKDPLKAICVAESYPEWMVKRWIKRFGAEETLE 177 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----------ESIVSLPG 217 + A I + V T + + + L + P + LPG Sbjct: 178 LCKAGNRIAPITIRVNSLAATRDEAADEIRDQVKNLELHDWPPMALSFSAPLVPVFELPG 237 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274 F+EG + VQDA++ + VLD CA G KT+ + + + ++ A D+ Sbjct: 238 FSEGKFSVQDAASQMTALCLDPRPGEKVLDACAGLGSKTSHIAQLMENTGEILAADLEPG 297 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTR 332 +L+KL + RL + +D + FD VLVDAPC+ G IRR+PD W++ Sbjct: 298 KLKKLEEEMARLKVSIVKTHALDFTRELSLEPQGFDKVLVDAPCTGLGVIRRNPDSKWSK 357 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + I K A Q +L + V+PGG++++S CS++ ++++ V++ LR++ Sbjct: 358 TLNSIHKHAKLQGMILSRAAELVRPGGLILYSVCSMEPEETDGVIKAFLRNNEDFT---- 413 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L + L +G +R P GMDGFFA +RR Sbjct: 414 LEPSPLPKDGDQTMLDEQGCMRTFPH--------RQGMDGFFAARMRRRA 455 >gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium UCYN-A] gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium UCYN-A] Length = 453 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 216/465 (46%), Gaps = 43/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR + +L + + + LD + + LS++D+ L +V +R Sbjct: 1 MKVS-NARQLVLKILREIDKNNSFINISLDSAFKHN---ELSRQDRGLCTELVYGIIRCQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D+++D + ++ L+++L + + Q+LYLD V A V+ +V+ AK + N Sbjct: 57 RTLDSLIDQLGNKKSQKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKNNNLN-V 115 Query: 120 FAKLVNSILRRVSREKIELLQR----------IAGISIIPEWFKERLENFYGKERVLAIS 169 +K+VN+ILR R K + + A P W + +G + + + Sbjct: 116 LSKVVNAILREYIRVKKKENCKLILSKDFVNTTAIKYSFPNWIVKNWYQQWGGDTSVKLC 175 Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219 ID+ V +T + + +RLK I +LPGF Sbjct: 176 YWFNQSPTIDIRVNVLGKTTQEIKNELIMANVNVEYLPHLPCSLRLKGQTGDIKNLPGFI 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 +G W VQD SA + L +V+D CAAPGGKT + + + A D RL Sbjct: 236 KGDWTVQDISAQLVSYLLDPKIGETVIDACAAPGGKTTHIAELMRDKGLILACDRISSRL 295 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 K++ N++RL L + +++ D+ D VLVDAPCS GT+ R+PD+ W + + Sbjct: 296 TKIQQNIERLKLRSIKLVKGDSRYLQQFNNFADRVLVDAPCSGLGTLHRNPDIRWRQTPE 355 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + + Q+++L + +VKP G++V+S C+L+ ++E +V L+++P PL S Sbjct: 356 KIKQLSIIQQEILDKASKWVKPNGVLVYSTCTLNVSENETIVCNFLKNNPEWNIEKPLFS 415 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ GW++ P MDGFF V LR+ Sbjct: 416 KLFSP-----FITSSGWLQTLPH--------EHNMDGFFMVKLRK 447 >gi|110635746|ref|YP_675954.1| Fmu (Sun) [Mesorhizobium sp. BNC1] gi|110286730|gb|ABG64789.1| Fmu (Sun) [Chelativorans sp. BNC1] Length = 460 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 201/439 (45%), Positives = 266/439 (60%), Gaps = 5/439 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G++AR ++ LL+ V+ R L L D E+G + L QRD+ LVRAI+ LR Sbjct: 26 KPGLDARRTAAKLLAAVIDARTPLDALTDNEHGHPQYLSLEQRDRALVRAILISALRHRC 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +SL +L V AQIL+LDV D A VDLAV QAK D F+ Sbjct: 86 TIEKLVGRRLDRPLPPNAHSLSHILHVGAAQILFLDVPDSAAVDLAVTQAKADPRAARFS 145 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR ++R K EL + + P WF ERLE YG ++ AI A D T Sbjct: 146 GLVNAVLRNLARRKHELPKALENTRDAPAWFAERLEAVYGHDQTDAILKAHRLEAPTDFT 205 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 V+ D WA +L +LP G +RL LP I LPGFAEG WWVQDA+AS+P +L G + Sbjct: 206 VRSDPALWAERLGGRVLPNGSVRLDRLPSPIPELPGFAEGAWWVQDAAASLPARLLGDVE 265 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 L V DLCAAPGGKTA L + GA V+A+D+S RL++L+ NLDRL L AE + + D + Sbjct: 266 GLFVADLCAAPGGKTAALALEGAWVSAVDISASRLKRLKANLDRLGLSAEIV-QADVLSW 324 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P++ FDAVL+DAPCSSTGT+RRHPDV WT+ +DI K A QR+LL + ++ + P GIV Sbjct: 325 EPERKFDAVLLDAPCSSTGTVRRHPDVPWTKTPEDIAKLADLQRRLLERALTLIHPSGIV 384 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFSNCSLD + EE+V+ VL + L P+ + ++ EG++R TP Sbjct: 385 VFSNCSLDPSEGEELVRDVLGK-QAGIALDPILPEELPGAE--HFVTAEGFLRTTPAHFG 441 Query: 422 KIDGVSSGMDGFFAVALRR 440 G+DGFFA LRR Sbjct: 442 TES-QLDGIDGFFAARLRR 459 >gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Paenibacillus polymyxa E681] gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Paenibacillus polymyxa E681] Length = 471 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 118/459 (25%), Positives = 204/459 (44%), Gaps = 39/459 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L V ++ L+ LS D L +V T+ +D Sbjct: 27 AREVALDVLIGVEQEGAYSNLELNRRLQ---QAGLSASDAGLATELVYGTVARRNTLDYF 83 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L+ + + + ++ LLR+SV Q++YLD V D+AVV AV AKR + ++ + +VN Sbjct: 84 LNKFVQKGTAKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIAKR-RGHQGISGMVN 142 Query: 126 SILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR + RE + +RI+ P+W +R YG + AI A P Sbjct: 143 GVLRSMLREPDKLRIPDDLSPEERISLEHSHPQWLVKRWIKQYGADTAEAICQANNEPPA 202 Query: 178 IDLTV---KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + ++N+ L + + ++ + +G+ VQD Sbjct: 203 VSVRVNTTMTSRDQLLDEMNSKGLDAVPSAVSPYGIVVRSGGNMALTSWYTDGLLSVQDE 262 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + + VLD CAAPGGKTA + + ++ A D+ + + +R +R Sbjct: 263 SSMLVAEAVAPEPGMLVLDCCAAPGGKTAHMAELMKDHGRIVANDLHAHKHQLIREQANR 322 Query: 286 LHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L A + + DA + + FD +L+DAPCS G IRR PD+ W++ D+ Sbjct: 323 LGLDAVETVTGDALELKERYAPASFDRILLDAPCSGFGVIRRKPDLRWSKTAQDVRDITQ 382 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL +KPGGI+V+S C+++ ++E + + L P E + ++ Sbjct: 383 LQHELLDSVAGLLKPGGILVYSTCTIEPDENEGQLTQFLSEHP---EYEWAEGHSFPDVN 439 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +++ P DGF+ LRR+ Sbjct: 440 REKDSIQGGSVQLLPQHF--------HSDGFYIARLRRV 470 >gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus polymyxa SC2] gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus polymyxa SC2] Length = 471 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 118/459 (25%), Positives = 205/459 (44%), Gaps = 39/459 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L+ V ++ L+ LS D L +V T+ +D Sbjct: 27 AREVALDVLTGVEQEGAYSNFELNRRLQ---QAGLSASDVGLTTELVYGTVARRNTLDYF 83 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L+ + + + ++ LLR+SV Q++YLD V D+AVV AV AKR + ++ + +VN Sbjct: 84 LNKFVQKGTAKLQPWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIAKR-RGHQGISGMVN 142 Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR + RE +L + P+W +R YG + AI A P Sbjct: 143 GVLRSMLREPDKLRIPDGLSAEERISLEHSHPQWLVKRWIKQYGVDTAEAICKANNEPPA 202 Query: 178 IDLTV---KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + ++ A + + + ++ + +G+ VQD Sbjct: 203 VSVRVNTTMTSRDQLLDEMVAKGIDAVPSPVSPYGIVVRSGGNMALTSWYTDGLLSVQDE 262 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + ++VLD CAAPGGKTA + + ++ A D+ + + +R R Sbjct: 263 SSMLVAEAVAPEPGMTVLDCCAAPGGKTAHMAELMKDRGRIVANDLHAHKHQLIREQASR 322 Query: 286 LHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L A + + DA D + FD +L+DAPCS G IRR PD+ W++ +D+ Sbjct: 323 LGLDAVETVTGDALDLKERYAPASFDRILLDAPCSGFGVIRRKPDLRWSKTAEDVRDITQ 382 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL +KPGGI+V+S C+++ ++E + + L P E + ++ Sbjct: 383 LQHELLDSVAGLLKPGGILVYSTCTIEPDENEGQLARFLSEHP---EYELAKDHSFPDVN 439 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 M +G +++ P DGF+ LRR+ Sbjct: 440 HEMDGIQKGSVQLLPQHF--------HSDGFYIARLRRV 470 >gi|222150167|ref|YP_002551124.1| Sun protein [Agrobacterium vitis S4] gi|221737149|gb|ACM38112.1| Sun protein [Agrobacterium vitis S4] Length = 493 Score = 286 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 215/448 (47%), Positives = 295/448 (65%), Gaps = 11/448 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR+ +S LL+ V+ ++ SL ++D ++G+ A+ LS+ D+ LVRAI+N +LRFLP Sbjct: 49 KPGLEARMAASRLLAAVIDRKTSLDGMMDGDHGNPAYAALSEADRGLVRAILNTSLRFLP 108 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RI+A+L +L + LP +L L V+ AQ++YLDV D++ VDLAVEQA RD +R FA Sbjct: 109 RIEAMLARLLDAPLPDGARALYHSLIVAAAQMVYLDVPDHSAVDLAVEQANRDPRSRRFA 168 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 KLVN++LRR+ REK LL + + +P+WF ERL YG+E I+ A ++P IDLT Sbjct: 169 KLVNAVLRRLGREKQALLADVEDVICMPDWFFERLIAVYGEEEARRIAQAQLTPAAIDLT 228 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA KLN V+LPTG IRL ++ +LPGF EG WWVQDA+A++PV++FG+L Sbjct: 229 VKADPAVWAEKLNGVVLPTGSIRLASFAGAVSALPGFEEGAWWVQDAAAALPVRMFGSLE 288 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299 +DLCAAPGGKTAQL +GA VTA++ S RL++L NL RL A+ + + M+ Sbjct: 289 GKRAVDLCAAPGGKTAQLAAAGAVVTAVEQSANRLKRLNGNLQRLGFSAQLVHQDLMEFN 348 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCSSTGT RRHPDV +T+ DIVK A Q +LL ++ + PGG Sbjct: 349 LGEDHPGFDAVLLDAPCSSTGTTRRHPDVFYTKGPQDIVKLAGVQERLLRHAVTLLAPGG 408 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--- 416 +VFSNCSLD Q+ E+VV +VL P +E V + A W ++ A ++P G R T Sbjct: 409 SIVFSNCSLDPQEGEDVVARVLADHP-ELERVAMQVADWPGLEDA--ITPLGEFRTTPAM 465 Query: 417 ---PDMLEKIDGVSSGMDGFFAVALRRL 441 P ML D + G+DGF+A LRR+ Sbjct: 466 LPGPAMLPGGDSHAGGLDGFYACRLRRV 493 >gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10] gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10] Length = 449 Score = 286 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 103/457 (22%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L + ++ + R + D+ +V T+++L +ID V Sbjct: 6 ARETALKILYDITENHAYSNISVNRHLENDKLREI---DRSFATELVYGTVKWLLQIDYV 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + ++ +LR+ + Q+L+ D + A + VE AKR ++ ++ VN Sbjct: 63 LGKYSSVKLKKLSPWIKNILRLGIYQLLHTDRIPVSAACNTGVELAKRY-GHQASSRFVN 121 Query: 126 SILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 ++LR +K + + ++ + P W E+ YG E + + Sbjct: 122 AVLRNIAKSKNNIPYPDKSDNVNYLSILYSHPVWMVEKWIELYGTEFTEELLKSNNQVPD 181 Query: 178 IDLTVK---FDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + D T L+ + + P SI +L F G + VQD Sbjct: 182 FIIRTNTLKTDRVTLLDMLHKEGISAEPGRYIEEAVILKSPSSITNLEVFKNGYFQVQDE 241 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + ++ +V+D+C+APGGK + + + + A DV + +L+ + + R Sbjct: 242 SSMLAAKILDPKEGETVIDVCSAPGGKATHMAQLMNNKGTIIARDVYQHKLKLIEQSCCR 301 Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + DA D VL+DAPCS G IR+ PD+ ++R ++ + Sbjct: 302 LGIDIIKTEIHDACCLDETFTGKADRVLIDAPCSGLGIIRKKPDIKYSRTEKELREITGL 361 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L ++KPGG +++S C++ ++++ ++V L +P L ++D+ Sbjct: 362 QREILKNSSKYLKPGGYLLYSTCTIQQEENLDIVSDFLEDNP-DFRLTGFQELMPPTLDI 420 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S EG+I++ P++ + DGFF ++R Sbjct: 421 AS--SAEGYIQLFPNINQ--------TDGFFISKIKR 447 >gi|90421014|ref|ZP_01228918.1| putative ribosomal RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] gi|90334792|gb|EAS48568.1| putative ribosomal RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1] Length = 472 Score = 286 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 202/442 (45%), Positives = 269/442 (60%), Gaps = 6/442 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARLV++ LLS ++ R S LLD G FR L RDQ LV+AI+ LRF Sbjct: 35 RPGLGARLVATKLLSAIVDARTSADGLLDAAGGHPGFRALEGRDQGLVKAIILSALRFRG 94 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I LD L LP +L+ +L V QIL+LDV D A VDLAV A D +R FA Sbjct: 95 TISRALDACLDRPLPPNAAALKHILHVGATQILFLDVPDSAAVDLAVAAANVDSRSRRFA 154 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 ++N++LRR+SREK L + +P+W R+ YG ER AI+ A ++P +DLT Sbjct: 155 GMINAVLRRLSREKDALREVATATENMPDWLAARMVAAYGPERTEAIARAHLTPAPLDLT 214 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA KL V LP G +RL + +L GFAEG WWVQDA+A++P QLFG L Sbjct: 215 VKRDPAGWAGKLGGVALPNGTVRLGSFDGPVTALEGFAEGEWWVQDAAAALPAQLFGDLT 274 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V DLCAAPGGKTAQLI +G VTALD++ R+++L+ NL RL L AE + D + Sbjct: 275 GKRVADLCAAPGGKTAQLIAAGGAVTALDINANRMKRLKANLARLSLEAETV-VGDIAAF 333 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P + FDA+L+DAPCSSTGTIRRHPDV +T+D ++I K A Q +LL + + + PGG + Sbjct: 334 EPAEPFDAILLDAPCSSTGTIRRHPDVPYTKDAEEIAKLAGVQARLLGEAVRLLAPGGRL 393 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML- 420 VFSNCSLD + E +V +L V P+ ++ A L+PEG +R TPDM+ Sbjct: 394 VFSNCSLDPAEGEAIVAALLTDRSDIVR-DPVQPGELPGMEFA--LTPEGDLRTTPDMMG 450 Query: 421 -EKIDGVSSGMDGFFAVALRRL 441 + G+DGF+A L+R+ Sbjct: 451 GAADAPATGGLDGFYAARLKRI 472 >gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942] gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942] Length = 451 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 125/461 (27%), Positives = 196/461 (42%), Gaps = 42/461 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S NAR V+ L+ + R+ LD S L D+ LV +V +R Sbjct: 5 SRGNARWVAFQTLTTI-REGAFADLALDRHLQRS---GLVGADRRLVTELVYGCVRRQRT 60 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +DA++D + ++ L+ +L++ + Q+ YL+ + A V V+ AK+ + Sbjct: 61 LDALIDLLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETVQLAKQLGLG-GLS 119 Query: 122 KLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDAC 172 VN+ILR+ R+ E A P+W + + G + + Sbjct: 120 GAVNAILRQYLRQSEERDPLPLPSDPIAALAIHQSFPDWLVQLWSDRLGLDEAEFLCHWF 179 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGV 222 P IDL + + L AV + +RL + P I LPGF EG Sbjct: 180 NQPPSIDLRINPLRTERSQVQAALEAVGIRSTPDPQLPQALRLIDPPGPIRQLPGFDEGW 239 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 W VQD+SA + L +VLD+CAAPGGK+ L + +V A D S +RL K+ Sbjct: 240 WMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQVIACDSSAKRLRKV 299 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + N RL L + +D D +LVDAPCS GT+ RH D W + D + + Sbjct: 300 QENAQRLQLSSITTRAIDGRQI-KGIQADRILVDAPCSGLGTLHRHADGRWRQSPDSVAE 358 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A Q ++L + +KP G +V++ C+L ++E V+++ L+ P + Sbjct: 359 LAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAVIEQFLQRHPDWQM-----APLAA 413 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +RI P DGFF L+R Sbjct: 414 DSPFQAWAEANGTLRIWPH--------RHDRDGFFGARLQR 446 >gi|39933110|ref|NP_945386.1| Sun/ nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009] gi|39652735|emb|CAE25474.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009] Length = 450 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 172/441 (39%), Positives = 254/441 (57%), Gaps = 8/441 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V++KR L L+ + LS RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ +L +L +P + L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LEGLLAKLLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE + + AG +P+W R YG E AI+ A +DLT Sbjct: 133 LVNAVLRRCAREGQPLVEELAAGTPDVPQWLLARWSEHYGAETTRAIAHAISHEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L+ +LPTG +R L S+ LPGF EG WWVQDA+A++P +LFG + Sbjct: 193 VKSDPAHWAARLHGEVLPTGTVR-TLLQGSVRMLPGFDEGQWWVQDAAAALPARLFGDIA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 SV DLCAAPGGKTAQL +GA+VTA+D S R+ +LR NL RL L + DA ++ Sbjct: 252 GKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSLK-VETGVADAAEW 310 Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPC+STGTIRRHPDV W + DI A Q +LL + S ++PGG Sbjct: 311 RGDATAEFDAVLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGG 370 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ E+ + +L + + P++ A + +A ++ +G +R P Sbjct: 371 TLVYCTCSLEPEEGEQAIAALLDA-ESSMRRQPIDPA--EVAGLAEIVTTDGALRTLPCH 427 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L D +G+DGF+A L + Sbjct: 428 LPHSDPRLAGLDGFYAARLVK 448 >gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya majuscula 3L] gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya majuscula 3L] Length = 477 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 126/483 (26%), Positives = 205/483 (42%), Gaps = 64/483 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + R+ L+ + L+ D+ LV +V ++R +DA Sbjct: 13 NPRQLAFLALRDIHRRGAFADIALNRVLHN---AQLTGADRGLVTELVYGSVRRQRTLDA 69 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 +LD + ++ L+ +L + + Q+ Y + A V+ V+ AK + + A +V Sbjct: 70 LLDQLGKKKANQQPPDLRTILHLGLYQLRYQGRIPASAAVNTTVDLAK-NNGFKGLAGVV 128 Query: 125 NSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 N +LR +R ++R+ + P+W E G E + Sbjct: 129 NGLLRNYARLAANSPDPLELPAGDMERLGILHSFPDWMIELWLQQLGLEETEQLCQWFNQ 188 Query: 175 PLYIDLTVKF---DIETWAHKLNAV----------------------------MLPTGGI 203 IDL + IE + + + Sbjct: 189 SPTIDLRINPLKVSIEEVEAGMQSAELAIQRVPTLVSHQDEGNGEIIPMFSNPAQLPQAL 248 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 R+ +I LPGF EG W VQD SA + L V+D CAAPGGKT + + Sbjct: 249 RIVGGVGAIQELPGFKEGWWTVQDCSAQLVSYLLDPQPGDVVIDACAAPGGKTTHIAELM 308 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSST 319 K+ A D S RL+K++ N RL L + I D+ D + +AVL+DAPCS Sbjct: 309 ADQGKIWACDRSASRLKKVQQNAQRLELQSIQISTGDSRDCPEFTNVANAVLLDAPCSGN 368 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+ R PD+ W + + + Q++LL ++VKPGG++V++ C+L+ Q++E V+Q Sbjct: 369 GTLHRRPDIRWRMTPEKVQELTVLQKELLEHTATWVKPGGVLVYATCTLNPQENEAVIQW 428 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P S + +PEGW+++ P MDGFF V L+ Sbjct: 429 FLEGHSQWQIEPPTVSF------LKEFSTPEGWLKVVP--------YRDQMDGFFMVRLK 474 Query: 440 RLI 442 R+I Sbjct: 475 RMI 477 >gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073] gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073] Length = 457 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 111/466 (23%), Positives = 190/466 (40%), Gaps = 37/466 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K ++AR + ++ V + LD L R++ L + ++ Sbjct: 5 KPAVSAREAALQVIYRVTEEGAYAGLALDEVLKS---AGLDGRERALATELAYSAIKAWG 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D L L L + ++ +LR+ Q+LY + A + VE AK+ +R Sbjct: 62 TLDWALGLFLRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKY-GHRGT 120 Query: 121 AKLVNSILRRVSREKIELLQRIAG---------ISIIPEWFKERLENFYGKERVLAISDA 171 LVN +LR + R+K L P W ER +G + + A Sbjct: 121 TGLVNGVLRHLDRQKDALPYPDWKTDPAGYLALRYYHPRWLVERWLEEFGYQETEYLCRA 180 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGV 222 P V + A +L A R + E ++ + P F EG+ Sbjct: 181 DNEPPPTIARVNTLKTRKDVLAARLQAEGATVRPARYAPEGLVVEGLGALEASPSFQEGL 240 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 ++VQD + + + V+D AAPGGKT L + + A DV + RL+ + Sbjct: 241 FYVQDEGSQLVSHALHPDSGAWVIDASAAPGGKTTHLAQLMADRGTILACDVHRGRLDLI 300 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N RL + + +DA + + D +L+DAPCS G +RR PD W ++ Sbjct: 301 AANCRRLGVTCVRTVLVDARELGERYPAAADYLLIDAPCSGLGVLRRRPDARWRKEAPRT 360 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A Q +L+ +KPGG++V+S C+L ++++EVV++ L + L Sbjct: 361 RELARLQLAILMGARQALKPGGVLVYSTCTLLPEENQEVVREFLERA-GEFRPDSLEPWL 419 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 M + +GW++ P G DGFF +++L + Sbjct: 420 PVLPPDLMVTARQGWVQFLPQ--------RHGTDGFFIARIKKLEK 457 >gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4] gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4] Length = 452 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 116/460 (25%), Positives = 194/460 (42%), Gaps = 40/460 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L G + ++ L+ + TLR L ID V Sbjct: 4 ARELALKVLYAVDVEGAYGNLALTSVMGKYRPQG---PERSLLTELCYGTLRRLNTIDWV 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + ++ +LR++V QILYLD + A + AVE AK+ A VN Sbjct: 61 LAKFIKRPLCEQNPWIRNILRLAVYQILYLDRIPPAAATNEAVELAKKY-APPSMAGFVN 119 Query: 126 SILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 ++LRR + + +A P W E +G E + I +A P Sbjct: 120 AVLRRVVREKDNLTFPDIRTNPVDHLALKYSHPTWLVEMWLKEFGLEETIRICEANNQPA 179 Query: 177 YIDLT---VKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQ 226 L ++ E +L L + LP + EG++++Q Sbjct: 180 AATLRTNLLRTTREELMERLRREADLRVSPTLYAPEGIRVQGFFDLQHLPSYQEGLFYIQ 239 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + + VLD+C APGGK L+ ++ +D+ RL + N Sbjct: 240 DESSMLAAHALAPASGSFVLDVCGAPGGKATHLAELMRDSGRILVVDIYAHRLALVVANS 299 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + + ++ DA + D VL D PCS G +RR PD+ W ++ + Sbjct: 300 RRLGLKSVETLQADARSLDQQFAGQADYVLADVPCSGLGVLRRKPDIRWRKEPEIFPGLV 359 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+++L + V+PGG++++ C+L + ++ +++ L P + L L +++ Sbjct: 360 TLQQEILESAAACVRPGGVLLYCTCTLGEAENLGQIKRFLSRHPDFL-LEDLRPFLPEAL 418 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D L G+I+I P GMDGFF LRR Sbjct: 419 DREGTL-RHGYIQIMP---------YQGMDGFFIARLRRK 448 >gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501] gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501] Length = 448 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 114/464 (24%), Positives = 190/464 (40%), Gaps = 38/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R + + V + +L+ + L+ +D+ L ++ +LR Sbjct: 1 MTK--NGRQTAVEAVYRVNEEGAYSNLILNHLFKKY---NLADQDRGLATELIYGSLRMR 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L+ + + + +LR+ + QI +LD + D + VE AK + + Sbjct: 56 NHLDWILNQFADRRVNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKDYQ-HSG 114 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 A VN ILR + K +Q I P+W E YG E + I Sbjct: 115 AAGFVNGILRSILRSLDEIEFPQLKSNPVQHIRYKYSFPQWMVETWVKRYGVELTVDICS 174 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEG 221 A + E L +V + T S+ F G Sbjct: 175 AFNQIPSKIIRQNRLKVTAEELQADLASVGIETEAISEIPQAFRVTNSSSLFQSNSFTAG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 + +Q ++ I + VLDLC+APGGKT L + + ++ A D+ + +LE Sbjct: 235 YFQIQGLASIIAGHIMNPQPKDIVLDLCSAPGGKTTHLAELMANQGEIVANDLHEDKLEL 294 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + N +RL + D +K FD +LVDAPCS G I + P++ W + DI Sbjct: 295 IERNCNRLGIRIVRTRAGDGRSLKFEKKFDRILVDAPCSGLGMIAKKPEIKWQKKPQDID 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 A Q +LL F+KP G +V+S C++ Q++ EV+ K L + ELV L+S + Sbjct: 355 SLAELQLELLNNAGRFLKPKGELVYSTCTITHQENLEVINKFLAQN-SDFELVDLSS-WA 412 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++ EG I++ P GFF L++ + Sbjct: 413 DKLGISSEFILEGSIQLLPTWQTNE--------GFFIAKLKKRV 448 >gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. PCC 7335] gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. PCC 7335] Length = 491 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 118/468 (25%), Positives = 211/468 (45%), Gaps = 51/468 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-----FRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ L + + ++D + + LS +D+ LV +V ++R Sbjct: 38 ARQIAFEALRAID-QGAFADVVIDRKLKGTQTGTQLGIQLSSQDKGLVTELVYGSVRRRR 96 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +DA++D ++ L Q+LR+ Q+ YLD V +AVVD V+ AK + + Sbjct: 97 TLDALIDQFGKRPASKQHRDLLQILRLGFYQLRYLDHVPVHAVVDTTVQLAKSQRLGK-L 155 Query: 121 AKLVNSILRRVSREKIELLQRIAG--------------ISIIPEWFKERLENFYGKERVL 166 + +VN++LR+ +RE + IA + P+W + + ++V Sbjct: 156 SGVVNAMLRQYAREAMPAANVIADPLKLPEERTRRLGILHSYPDWIIDVWRSMLPDDQVE 215 Query: 167 AISDACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLP 216 A+ + Y++L + ++ + + + +RL ++ LP Sbjct: 216 ALCEYFNRSPYLELRINLQRQSLSAAIALFADAGIEALPIEGVPSALRLTTHAGAVTQLP 275 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 G+AEG W VQD+SA + L ++D CAAPGGK+ + + + V + D + Sbjct: 276 GYAEGWWAVQDSSAQLVSYLLDPQPGEVIIDACAAPGGKSLHIAELMRNEGTVWSCDRTS 335 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R +K++ N+DRL I D+ + D VL+D PCS GT+ RH D W + Sbjct: 336 SRTKKIQQNIDRLGATIVRPIMGDSRNQPTFLGQGDRVLLDVPCSGLGTLNRHADARWRQ 395 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + Q+++L+ ++VKPGG++V++ C+L Q++E ++ L + P Sbjct: 396 TPDSVDSLVTLQQEILMHASTWVKPGGVLVYATCTLHPQENEAQIKTFLSQNAGWTIEAP 455 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + GWI++ P + MDGFF V LRR Sbjct: 456 -------PPSFGIEPTEAGWIKVWPHIQ--------HMDGFFIVKLRR 488 >gi|192288464|ref|YP_001989069.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1] gi|192282213|gb|ACE98593.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1] Length = 450 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 169/440 (38%), Positives = 251/440 (57%), Gaps = 6/440 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V++KR L L+ + LS RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ +L +L +P + L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LEGLLAKLLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE + + AG +P+W R YG E AI+ A +DLT Sbjct: 133 LVNAVLRRCAREGQPLVEELAAGTPDVPQWLLARWSEHYGAETARAIAHAISHEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L+ +LPTG +R L S+ LPGF EG WWVQDA+A++P +LFG + Sbjct: 193 VKSDPAHWAARLHGEVLPTGTVR-TLLQGSVRMLPGFDEGQWWVQDAAAALPARLFGDIA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFD 300 SV DLCAAPGGKTAQL +GA+VTA+D S R+ +LR NL RL + + + Sbjct: 252 GKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSFEVETGVADAAEWR 311 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FDAVL+DAPC+STGTIRRHPDV W + DI A Q +LL + S ++PGG Sbjct: 312 GDETAEFDAVLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGGT 371 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL+ ++ E+ + +L + + P++ A + +A ++ +G +R P L Sbjct: 372 LVYCTCSLEPEEGEQAIAALLDA-ESSMRRQPIDPA--EVAGLAEIVTADGALRTLPCHL 428 Query: 421 EKIDGVSSGMDGFFAVALRR 440 D +G+DGF+A L + Sbjct: 429 PHSDPRLAGLDGFYAARLVK 448 >gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Synechococcus sp. PCC 7002] gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Synechococcus sp. PCC 7002] Length = 447 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 204/465 (43%), Gaps = 45/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S AR ++ L +M LD S L+ D+ LV +V T+R Sbjct: 1 MSS---ARQLAFLALRQIMYHNAYTDVALDRVLHKS---NLTGSDRALVAELVYGTVRRQ 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +DA++D + + ++ L+ LL++ + Q+ YLD + A V+ +VE AK +K + Sbjct: 55 KTLDAIIDQLGKKPIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKTNKLGQ- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAIS 169 A +VN LR R++ + + A PEW + +G E + Sbjct: 114 LAGVVNGCLRGYLRQRDKGHDPLQLPEAAAERLALQYSFPEWLIGQWLEQFGAEETEQLC 173 Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219 P +DL V A K A+ +RL E I LPG+ Sbjct: 174 QWFNRPAQLDLRVNPLRANVAAVQDKLNQAGVKAEAIANLPNALRLVEKRGLIQDLPGYK 233 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRL 276 EG W +QDASA + L ++D CAAPGGKT + + A D + R+ Sbjct: 234 EGWWTIQDASAQLVTHLLDPQPGEVIIDACAAPGGKTTHIAEKMQDRGTIWASDKYQARI 293 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 K+ N RL L + D+ Y + + D VL+D PCS GT+ + PD+ W ++ Sbjct: 294 NKIEQNARRLKLSMIRTLIGDSRTYSQFRNMADRVLLDVPCSGLGTLHKRPDIRWQQNPQ 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + Q +LL G ++VKPGG +V++ C+L+ ++E + + L P ++VP + Sbjct: 354 KIAQLTQLQGELLTTGATWVKPGGYLVYATCTLNPAENEAIANQFLVEHPDW-QIVPPSP 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +GWI++ P MDGFF V L+R Sbjct: 413 DLPAFPYAQ----EQGWIQVLPQ--------RHDMDGFFMVKLQR 445 >gi|163869265|ref|YP_001610521.1| SUN-family protein [Bartonella tribocorum CIP 105476] gi|161018968|emb|CAK02526.1| SUN-family protein [Bartonella tribocorum CIP 105476] Length = 454 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 194/445 (43%), Positives = 271/445 (60%), Gaps = 10/445 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ + L+ L D E+G + LSQRD++L RAI+ +LR + Sbjct: 15 PGLAVRQVCVRLLGAVVDRYTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQ 74 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I A L L LP + SLQ LL +SVAQILYLD+ D+A +DLAV AK D R F+ Sbjct: 75 ITAALSCFLERPLPSQALSLQHLLHISVAQILYLDIPDHAAIDLAVRVAKFDPRMRRFSG 134 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +VN++LR V+RE L Q++ I +P WF + L + YG E+ I + +DLTV Sbjct: 135 VVNALLRNVAREAAPLRQQVPTIEGVPAWFSQLLVSAYGIEKAQQIIELQSVEPPLDLTV 194 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L V+LP G +RL L S+ LPG+ EG WWVQD +A++P L G L Sbjct: 195 KSDSIGWAERLGGVVLPNGSVRLNRLECSVSDLPGYREGAWWVQDFAAALPACLLGELRG 254 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL + GA+VTA+++S R+++L+ N++RL+ I + D ++ Sbjct: 255 KRVADLCASPGGKTAQLALQGAEVTAIELSANRVKRLKENMERLYFS-VHIWQGDVRNFH 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P +LFDAVL+DAPCSSTGTIRRHPD+LWT+ DD++K A Q LL+ I+ VK GG +V Sbjct: 314 PTQLFDAVLLDAPCSSTGTIRRHPDILWTKSRDDVIKLAALQYDLLVAAIALVKKGGRIV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--- 419 FSNCSL +++ E++++K+L V L+ Y + + L EG +R TP Sbjct: 374 FSNCSLAREEGEDLIEKILSIRNDIV----LDPIYPEEMGALAHLLSEGMVRTTPADFCH 429 Query: 420 --LEKIDGVSSGMDGFFAVALRRLI 442 + GMDGFFA LR++ Sbjct: 430 KNFDAEKTAPLGMDGFFAARLRKIA 454 >gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1] gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1] Length = 447 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 121/464 (26%), Positives = 206/464 (44%), Gaps = 39/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R V+ L V K LL+ LS+RD L+ IV T++ Sbjct: 1 MKAK-NVREVALETLLAVEEKEAYSNLLLNNMIETHR---LSERDVRLLTEIVYGTIQRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + + ++ LLR+++ Q+LYLD + D A + AVE AK+ + ++ Sbjct: 57 DTLDYYLAPFLKKA-RKLERWVRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKK-RGHQG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A LVN ++R + R+ + L+ I A + P W +R YG + + Sbjct: 115 IASLVNGVMRAILRQGVPPLENIEDEVERLAVATSHPRWLVKRWVEQYGWMETKRMCETN 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224 + P V T A L+ + + ++ ++ + F G Sbjct: 175 LLPPKQTARVNTARITIAETLDRLRQEGMEVSRGEVAAEAIQAKKGNLANTEAFRRGWIT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + G + VLD CAAPGGK+ + + + +V D+ + ++ + Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N RL L +D+ ++ FD +LVDAPCS G IRR PD+ + + DI Sbjct: 295 NAKRLQLTNISARTLDSRRLGEVFERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADIS 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 A QR++L +K GG +V+S C++D +++E V+ + L P E P + Sbjct: 355 SLAALQREILDAVAPLLKKGGTLVYSTCTIDHEENEAVIAQFLNDHP---EFSPDETMKQ 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + G + + P G DGFF +LR+ + Sbjct: 412 RLPEKVQPYVRNGQLHLLPHYF--------GSDGFFIASLRKKV 447 >gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646] gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646] Length = 450 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 119/466 (25%), Positives = 203/466 (43%), Gaps = 42/466 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS + R ++ +L+ V + L+ +S+ D+ L+ +V ++ Sbjct: 1 MKSVKLKPRELAVRILTEVE-RGSYSNLSLNRHLT----AEISREDRALITELVYGVIKH 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 R+D VL L + LRV + QIL+LD + DYA V+ +V AK ++ Sbjct: 56 RIRLDYVLSKFSKIGLNDINPIILNCLRVGLYQILFLDKIPDYAAVNESVNIAKLY--SK 113 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAIS 169 A VN +LR V R K + P+W R + +G E ++ Sbjct: 114 KAAGFVNGVLRNVIRSKDGIDYPDRVKDPLRYLVVYYSFPKWMIRRWLDLFGFEFTESLC 173 Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAE 220 A + + V + L+ + + + L F Sbjct: 174 KAFNEKPRMCVRVNELKINKTGLQAFLDKEGVVHNPGLFLEEALYIDDGPPLTELDSFKN 233 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G + QD S+ + + G + +VLD+ AAPGGKT L + + ++ A D+ R++ Sbjct: 234 GYFQPQDESSMLVARALGAASGETVLDVAAAPGGKTTHLAQLMKNSGRIYAWDIHPHRVQ 293 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L+ RL + DA FD VLVDAPCS G IRR PD+ WT+ + Sbjct: 294 LLKETCQRLGVSIVYPEVRDARVPDKNLFGKFDRVLVDAPCSGLGVIRRKPDIKWTKKPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI Q +++ +VKPGGI+++S CS++ +++ EVV++ L+ + +L + Sbjct: 354 DIPVLKREQLQIIRVSSQYVKPGGILIYSTCSIEPEENREVVKEFLKEN-RDFDLDDIRP 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ A G+I+I P++ +DGFF L+R+ Sbjct: 413 HLPEAL-SADVKEQYGYIQIYPNL--------HSIDGFFIARLKRI 449 >gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM 14863] gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 459 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 108/460 (23%), Positives = 182/460 (39%), Gaps = 42/460 (9%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L V K LD S L R++ L + R +D + Sbjct: 13 REAALRALYDVDIKAAYANLALDHHLSRSQ---LDGRERALATELAYGVTRRRATLDWAI 69 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 V L + ++ +LR + QILY+D + A VD AVE A++ + AK VN Sbjct: 70 GQVAARPLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQY-GHEGVAKFVNG 128 Query: 127 ILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR + R L A PEW + +G+ + + +A Sbjct: 129 VLRNLIRRLPGLPWPDEAADPVRALAVQHSYPEWLVAQWLERFGRGEAVRLLEAGNQVPP 188 Query: 178 IDLTVKFDIET------------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + V T + I+ S+ L +G+ V Sbjct: 189 LTVRVNRLKATREEAAAALAAEGVRTEPTRHSPQGLIIQDLTSASSLERLEAMKQGLITV 248 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + + V+D+ AAPGGK L+ + +V ALD+ ++ + N Sbjct: 249 QDESSMLAAAVLNPQPGWMVIDVAAAPGGKATHLAELMDNRGRVIALDIHPHKVALIEEN 308 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + + +DA DAVL D PCS GT+ R PD W + +D+ Sbjct: 309 AERLGTTIVEAVCLDARRVGEAMPERADAVLCDLPCSGLGTLARRPDARWRKSPEDVEAL 368 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QR +L +KPGG++V+S C++ +++EE+V+ + P E + Sbjct: 369 VPIQRAILESAAKALKPGGVLVYSTCTIQPKENEELVEGFVADHP---EFRFDRVWDYLP 425 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ EG++++ P + G DGFF + + Sbjct: 426 GTISPEGQAEGYVQLLPHV--------HGTDGFFIARMVK 457 >gi|144899806|emb|CAM76670.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein NusB [Magnetospirillum gryphiswaldense MSR-1] Length = 437 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 163/436 (37%), Positives = 243/436 (55%), Gaps = 14/436 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + LL CV+ ++ L LD + L++RD+ R +V TLR L +IDAV Sbjct: 14 PRSIVLDLLECVLAQKRLLDETLD---SEPRLTKLAERDRAFTRMLVATTLRRLGQIDAV 70 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + LP K ++ +LR+ AQ+L+LD +A + V+ AK FAKL+N+ Sbjct: 71 IARCIDRPLPAKAGRVRNMLRLGAAQLLFLDTPPHAAISTTVDLAKNSPL-AGFAKLINA 129 Query: 127 ILRRVSREKIELL-QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 +LRR+ RE + ++ AG P W + + YG + I+ A + +D++V D Sbjct: 130 VLRRLDREGRAWVAEQDAGPLNTPAWMWQSWLDTYGPDTARLIAQAHQTEAPVDISVAGD 189 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 WA +L A ++PTG +R ++ + LPGFAEG WWVQD +AS+P +L G + V Sbjct: 190 PALWAERLEADIMPTGTLR-RQAGGDVTQLPGFAEGAWWVQDLAASLPAKLMGAVKGKRV 248 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 DLCAAPGGK QL V+ A+VTA+D S +R+ + R NL+RL L A + E D + P Sbjct: 249 ADLCAAPGGKALQLAVAEAEVTAVDRSAKRMVRFRRNLERLKLAATIV-ETDVAGWQPPA 307 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FDAVL+DAPC++TGT+RRHPD + + D+ A Q LL + VKPGGI+V+ Sbjct: 308 PFDAVLLDAPCTATGTLRRHPDGVHLKGPGDVAYLADQQHALLKAAAAMVKPGGILVYCV 367 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL+ Q+ E + ++L S P+ P+ + +D L+ +G IR P L + Sbjct: 368 CSLEPQEGEAQIIRLLES-GAPLVRDPIEPSEIPGLDF--VLTKQGEIRTLPHYLAE--- 421 Query: 426 VSSGMDGFFAVALRRL 441 GMD FF L+R+ Sbjct: 422 -KGGMDAFFIARLKRM 436 >gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101] gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101] Length = 443 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 123/458 (26%), Positives = 206/458 (44%), Gaps = 40/458 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L + RK++ LD + L ++ LV +V +R +DA Sbjct: 4 NPRQLAFIILQEIYRKQVFTDVALDRHLKKN---DLIDANRRLVTELVYGCVRRQRSLDA 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D + P++ L+ +L + + Q+ YL+ + + A VD VE AK++K + A V Sbjct: 61 IIDQLAKKKSPQQHPYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKFAK-LAGFV 119 Query: 125 NSILRRVSREKIELLQRIAGI------SIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N +LR R+ + + + P W + G + I Sbjct: 120 NGLLREYIRQNLTINLPENPVQKLGISYSFPNWIVKYWIEELGLTEAEKLCYWFNLSPSI 179 Query: 179 DLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 DL + + A ++ +RL I LPG+ EG W +QD+ Sbjct: 180 DLRINPLKTSVEEVEIAMKNIGISVSRILQVPQALRLNGAVGQIQKLPGYNEGWWSIQDS 239 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + L ++D CAAPGGKT + + K+ A+D++ RL+KL N +R Sbjct: 240 SAQLVCYLLNPQPGEIIIDACAAPGGKTTHIGELMGDNGKIFAIDMTASRLKKLESNTER 299 Query: 286 LHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L L + I D+ + D VL+D PCS GT+ R D W + ++I + A Q Sbjct: 300 LQLKSISISRGDSRNLTEFINQADRVLLDVPCSGLGTLHRRADARWRKTLENIGELAKLQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +LL +VKPGG++V++ C++ ++E V++K L ++ P ++D Sbjct: 360 GELLENAAKWVKPGGVLVYATCTIYPLENEGVIEKFLTNNYEWEIEAP-------TVDFM 412 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ EGWI+I P MDGFF V LRR + Sbjct: 413 VSPCREGWIKIWPH--------REQMDGFFMVKLRRKV 442 >gi|295399764|ref|ZP_06809745.1| sun protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978167|gb|EFG53764.1| sun protein [Geobacillus thermoglucosidasius C56-YS93] Length = 447 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 121/464 (26%), Positives = 206/464 (44%), Gaps = 39/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R V+ L V K LL+ LS+RD L+ IV T++ Sbjct: 1 MKAK-NVREVALETLLAVEEKEAYSNLLLNNMIETHR---LSERDVRLLTEIVYGTIQRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + + ++ LLR+++ Q+LYLD + D A + AVE AK+ + ++ Sbjct: 57 DTLDYYLAPFLKKA-RKLERWVRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKK-RGHQG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A LVN ++R + R+ + L+ I A + P W +R YG + + Sbjct: 115 IASLVNGVMRAILRQGVPPLENIEDEVERLAVATSHPRWLVKRWVEQYGWIETKRMCETN 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224 + P V T A L+ + + ++ ++ + F G Sbjct: 175 LLPPKQTARVNTARITIAETLDRLRQEGMEVSRGEVAAEAIQAKKGNLANTEAFRRGWIT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + G + VLD CAAPGGK+ + + + +V D+ + ++ + Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N RL L +D+ ++ FD +LVDAPCS G IRR PD+ + + DI Sbjct: 295 NAKRLQLTNISARTLDSRRLGEVFERETFDKILVDAPCSGFGVIRRKPDIKYAKTEADIS 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 A QR++L +K GG +V+S C++D +++E V+ + L P E P + Sbjct: 355 SLAALQREILDAVAPLLKKGGTLVYSTCTIDHEENEAVIAQFLNDHP---EFSPDETMKQ 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + G + + P G DGFF +LR+ + Sbjct: 412 RLPEKVQPYVRNGQLHLLPHYF--------GSDGFFIASLRKKV 447 >gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822] gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822] Length = 450 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 214/465 (46%), Gaps = 42/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R ++ +L + RK LD + + L D+ LV +V +R + Sbjct: 1 MKLETDPRQLAVTILRDIYRKDAYTDIALDQGLKQAQLKSL---DRGLVTELVYGIVRRV 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ + + ++ L+ +L++ + Q+ YLD + A V+ +VE AK+++ + Sbjct: 58 RTLDQLITQLGKKTATQQPPDLRIILQIGLYQLRYLDQIPVSAAVNTSVELAKKNQLGK- 116 Query: 120 FAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAIS 169 + +VN ILR+ R + + + + P W ++ +G+ + Sbjct: 117 LSGVVNGILRQYDRIQAQGKDPLELPSDRINRLGVLHSFPNWIVQQWLEEWGEGETEKLC 176 Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219 + P ID+ V T K+ V +RL SI LPGF Sbjct: 177 EWFNQPAMIDIRVNLLKTTVEEVELGFSKAGVKVLPVPHLPQALRLIGGSRSISQLPGFE 236 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 EG W VQD+SA + L ++D CAAPGGKT + + + A D RL Sbjct: 237 EGWWTVQDSSAQLVTHLLDPQPEEIIIDACAAPGGKTTHIAELMQDRGTIWACDRVASRL 296 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 K++ N RL L + I D+ ++ D VL+DAPCS GT+ + PD+ W + + Sbjct: 297 RKVQQNAQRLQLNSIKICSGDSRQLTQFRETADRVLIDAPCSGLGTLHKRPDIRWRQTPE 356 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + + QR+LL + S++KP G++V++ C+L+ ++E++++ L P PL+S Sbjct: 357 KIEELSVLQRELLEEAASWIKPKGVLVYATCTLNPLENEKLIEAFLHHHPNWQIQPPLSS 416 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A + GWI++ P + MDGFF V L + Sbjct: 417 S-----PAAAFATTPGWIKVLPHL--------HLMDGFFMVKLVK 448 >gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1] gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1] Length = 442 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 107/460 (23%), Positives = 184/460 (40%), Gaps = 44/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR V+ +++ V L E R L+ RD+ + +V T++ +D Sbjct: 1 MNAREVALKVINRVDIDGAYANIALAQEMS---QRDLTDRDRRFITELVYGTVKAGATLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 +L L + ++ +LR+ + QI +L + A + AV+ A++ + K Sbjct: 58 WILSHYSSRPLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKY-GHAGTVKF 116 Query: 124 VNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN++LR + + + IA PEW R +G + +A Sbjct: 117 VNAVLRSAGRSPDKVVYPDRERDPEKYIALRYFHPEWLVRRWVARFGAAICERLCEANNE 176 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWV 225 + L +L + L ++ L G++ V Sbjct: 177 TPPLSLRTNTLKTSRADLLRRLAGEGVVCEPSAWAPEGILCHEYPALSKLASLRAGLFQV 236 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + V+D C APGGK+ + + + KV A D+ + +L +R N Sbjct: 237 QDESSMTVAHVLSPRPGDFVIDACGAPGGKSTHIAALMGNKGKVLATDIYEHKLALMRDN 296 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + + +DA D VLVDAPCS G +RR PD W ++ + Sbjct: 297 AVRLGISILETQLLDAVKLGELYPGQADRVLVDAPCSGLGVLRRKPDSRWRKNEQMLTDL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L +KPGGI+V+S C+ + +++ EVV+ L ++P + L P Sbjct: 357 PRLQLAILASAAKCLKPGGILVYSTCTTEPEENGEVVKSFLATNPEFI-LEPAGRYLPVG 415 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E +++ P + G+DGFF + R Sbjct: 416 R-------QEEMVQLWPH--------ADGVDGFFIARMVR 440 >gi|75910625|ref|YP_324921.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC 29413] gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC 29413] Length = 449 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 198/461 (42%), Gaps = 43/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N+R ++ L V K LD LS D+ LV ++ ++R +D Sbjct: 2 TNSRQIAFIALRDV-HKGAYTDVALDRALQK---ANLSDIDRRLVTELLYGSVRRQRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + ++ L+ +L + + Q+ Y + A V+ VE AK D Sbjct: 58 FIIDQLAKKKSHQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAK-DNGFAGLTGF 116 Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR+ R + + P+W + G + + Sbjct: 117 VNGLLRQYIRLAEASPDFLELPENPVERLGILHSFPDWIIKVWLEQLGLTETEKLCEWMN 176 Query: 174 SPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V + A A + +RL SI LPGF++G W Sbjct: 177 QTPTLDLRVNPLRTSVAEVETALKSAGVLARPIPHLPQALRLIGNTGSIQKLPGFSQGWW 236 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQDASA + L ++D CAAPGGKT + + KV A D + RL KL+ Sbjct: 237 VVQDASAQLVSHLLDPQPGEVIIDACAAPGGKTTHIAELMKDQGKVWAGDRTASRLRKLK 296 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N RL+L++ +I D+ + + D VL+DAPCS GT+ RH D W + + + + Sbjct: 297 ENAQRLNLHSIEICTGDSRNLPQFYNVADRVLLDAPCSGLGTLHRHADARWRQTPESVQE 356 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 + Q++LL FVK GG++V++ C+L ++EEV+ + + + P + Sbjct: 357 LSTLQQELLSHTSKFVKVGGVLVYATCTLHPAENEEVITEFMARNSDWQIEPPSPDS--- 413 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +P+GW+++ P + MDGFF V LR+ Sbjct: 414 --PYSDYTTPQGWLKVWPH--------NQDMDGFFMVRLRK 444 >gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus OF4] gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus OF4] Length = 448 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 118/462 (25%), Positives = 200/462 (43%), Gaps = 37/462 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R V+ +L + + + LL+ S L +RD L+ +V T++ Sbjct: 1 MSK--NVREVAVDVLLQIEKNQAYSNLLLNQTINKSK---LDRRDIGLLTELVYGTIQRR 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + + + + ++ LLR+SV Q++YLD + D AVV AV AK+ + ++ Sbjct: 56 DTLDYFLAPFVKKGIDKLEDWVKVLLRLSVYQLVYLDRIPDRAVVHEAVTIAKK-RGHKG 114 Query: 120 FAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + +VN +LR + + + ++R+A + P+W R +G+E + + Sbjct: 115 ISGMVNGVLRSIGREGVPDIKNEKDPIKRLALETSHPKWLVARWVKQFGEEDTRLMCEEN 174 Query: 173 ISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V T ++ AV L + F +G Sbjct: 175 LVSPAVTVRVNQTKATREEVISMLEADGIAAVKGELSEDALIIKSGQVFESKAFKQGYVT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 QD S+ + + G + V D+CAAPGGKT + + V A D+ +++ +R Sbjct: 235 AQDESSMLVGRALGANSGERVADVCAAPGGKTTHIAEQMNNEGSVLAFDLHDHKVKLIRG 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L D DA + FD +LVDAPCS G I+R PD+ W + DI Sbjct: 295 QAARLDLSIIDTQAADARKLAEKFEPESFDRILVDAPCSGFGVIKRKPDIKWAKKEADIK 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q+ +L +K GG +V+S C++DK ++EE V+ L P V+ L + Sbjct: 355 AIQSIQQAILNAVAPLLKKGGTLVYSTCTVDKDENEETVEAFLAEHPSFVKDEDLKNRLP 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K + + G + I P DGFF +L + Sbjct: 415 KQVIDSKRF-KSGMVTILPQDF--------NSDGFFISSLVK 447 >gi|121602907|ref|YP_988410.1| putative ribosomal RNA small subunit methyltransferase B [Bartonella bacilliformis KC583] gi|120615084|gb|ABM45685.1| putative ribosomal RNA small subunit methyltransferase B [Bartonella bacilliformis KC583] Length = 456 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 196/453 (43%), Positives = 270/453 (59%), Gaps = 18/453 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R V LL V+ K SL+ L D E+G + LS RD++L RAI+ LR +I Sbjct: 8 GLAVRQVCVRLLGAVLDKHTSLSGLTDHEHGHPLYLKLSYRDRLLCRAILIAALRHRGQI 67 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 A L L LP K ++LQ L +S AQILYLD+ DYA +DLAV AK D R F+ L Sbjct: 68 QAALSRFLTRPLPSKAFALQHLFHISAAQILYLDIPDYAAIDLAVRAAKIDPRTRCFSGL 127 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN+ILR +R+ + L ++ + +P+WF + L + YG+E+ I +DLTVK Sbjct: 128 VNAILRNFARDAMVLKRQALTFNEVPDWFWQLLVSTYGEEKAQRILAMQSETPPLDLTVK 187 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 D E WA +L V+L G +RLK L S+V LPG+AEG WWVQD +A++P + G ++ Sbjct: 188 SDSEGWAKRLGGVVLSNGSVRLKALESSVVDLPGYAEGAWWVQDVAAALPARFLGDIHGK 247 Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 V DLCA+PGGKTAQL + GA VTA+D+S RL++L N+ RL+ D ++ P Sbjct: 248 RVADLCASPGGKTAQLALQGADVTAVDLSANRLKRLTANMHRLNFS-VSYWNGDVRNFHP 306 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 +KLFDAVL+DAPCSS GTIRRHPD+LW + +DI+K A Q LLL I+ VK GG +VF Sbjct: 307 EKLFDAVLLDAPCSSLGTIRRHPDILWIKSREDIMKLAAVQYDLLLAAIAVVKKGGHIVF 366 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 SNCSL +++ E++++KVL + V L P+ + DM L+ EG +R TP Sbjct: 367 SNCSLAREEGEDLIEKVLATR-DDVVLEPI--LENELGDMKHVLTVEGIVRTTPADFCGS 423 Query: 424 DGVSS--------------GMDGFFAVALRRLI 442 + GMDGF+A LR++ Sbjct: 424 VEFADFKSENFYAENKLLFGMDGFYAARLRKIA 456 >gi|52785554|ref|YP_091383.1| YloM [Bacillus licheniformis ATCC 14580] gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis ATCC 14580] gi|52348056|gb|AAU40690.1| YloM [Bacillus licheniformis ATCC 14580] gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis ATCC 14580] Length = 448 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 40/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R V+ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKN--NVREVALDALIKLDQNQAYSNLLLQSAMKAN---DLSDKDRGLLTELVYGTLQNK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + LLR+S+ Q+ YL+ + D A + AVE AKR + ++ Sbjct: 56 LALDYMLKPFIKKP-EKVKDWVIHLLRMSLYQMEYLEKIPDRAALFEAVEIAKR-RGHKG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172 + VN +LR V RE + IA + PEW + YG E I Sbjct: 114 ISSFVNGVLRSVQREGVPSFADIADPIERLAVETSHPEWLVREWTDAYGFEAAEQICRIH 173 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224 + P + V D +T +LN + L + L +I S P F EG Sbjct: 174 MIPPKQTIRVNRLKNDRDTLLSRLNEAGIEAEEGDLSKDAVKLLKGTIASTPFFKEGEVT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + + G +VLD CAAPGGK+ + KV +LD+ + +++ ++ Sbjct: 234 IQDESSMLVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKE 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 R+ L + +DA + FD +LVDAPCS G IRR PD+ +++ +D Sbjct: 294 AAGRIGLSNIEARALDARKAGEVFEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSA 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +L + +K GG +V+S C++D ++E+V+ L E + Sbjct: 354 RLAGIQLAILNEIAPLLKTGGTLVYSTCTMDPTENEQVMHAFLEEHD---EFEADPTLAE 410 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A +G I+I P G DGFF ++R+ Sbjct: 411 RLPEKAAPYVKDGSIQILPHYF--------GTDGFFICSMRKK 445 >gi|322384328|ref|ZP_08058026.1| RNA-binding Sun-like protein/16S rRNA adenosyl-L-methionine-dependent methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150830|gb|EFX44267.1| RNA-binding Sun-like protein/16S rRNA adenosyl-L-methionine-dependent methyltransferase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 461 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 121/459 (26%), Positives = 210/459 (45%), Gaps = 38/459 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ +L+ LS++D L IV T++ L ID Sbjct: 16 AREAALQVLLEVEKEHAYSNLMLNKVLRH---ADLSRQDAGLATEIVYGTIQRLNTIDCF 72 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + + ++ LLR+S Q+ YLD + D+A V+ AV+ AK+ + ++ + +VN Sbjct: 73 LARFVKKRLDKLEPWVKCLLRLSFYQLYYLDRIPDHAAVNEAVKIAKK-RGHQGISGMVN 131 Query: 126 SILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR V R+K + ++RIA P+W R YG+E+ + A Sbjct: 132 GVLRNVIRQKGDLLLPADLSPIRRIALEQSHPDWLVRRWVEQYGEEKTAEMCLANNKAPK 191 Query: 178 IDLT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDA 228 I + +K E +L + + ++ +A G + +QD Sbjct: 192 ISIRNNILKHCREELIERLLDEGIQAEASFLAPQGIIITGGGNMALTKEYANGDYSIQDE 251 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + +L + VLD CAAPGGKT + + V A D+ + + + ++ +R Sbjct: 252 SSMLVAELVDPKEGMIVLDCCAAPGGKTTHLAEKMNNKGIVKAFDLYEHKEQLIQEQAER 311 Query: 286 LHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + + DA + FD +L+DAPCS G IRR PD+ W + DI + Sbjct: 312 LQLTSVETAVADARKLGERFNRETFDRILLDAPCSGLGVIRRKPDLKWMKKEQDIEEIRK 371 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+ LL +KPGGI+V+S C+++ ++E+ V + L P + ++ + + Sbjct: 372 VQQDLLCAVPGLLKPGGILVYSTCTVEIAENEDQVNRFLEKHPDFIPVLEPVPGWPP--E 429 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + L G ++I P + DGFF V LR+ Sbjct: 430 LNVQLMNRGMVQIFPQDYQS--------DGFFMVRLRKK 460 >gi|240851336|ref|YP_002972739.1| SUN-family protein [Bartonella grahamii as4aup] gi|240268459|gb|ACS52047.1| SUN-family protein [Bartonella grahamii as4aup] Length = 454 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 198/445 (44%), Positives = 273/445 (61%), Gaps = 10/445 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ K L+ L D E+G + LSQRD++L RAI+ +LR + Sbjct: 15 PGLAVRQVCVRLLGAVVDKHTPLSGLTDNEHGHPQYLKLSQRDRLLCRAILTASLRHRGQ 74 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I A L +L LP + SLQ LL +SVAQILYLD+ D+A +DLAV AK D R F+ Sbjct: 75 ITAALSRLLARPLPSQALSLQHLLHISVAQILYLDIPDHAAIDLAVRVAKLDPRMRRFSG 134 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +VN++LR ++RE + L Q+I I +P WF + L + YG E+ I DLTV Sbjct: 135 VVNALLRNIAREAVSLRQQIPSIEGVPAWFGQLLMSAYGTEKAHQIIAIQSVEPPFDLTV 194 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L ++LP G +RL L S+ LPG++EG WWVQD +A++P L GTL Sbjct: 195 KSDSVGWAERLGGLVLPNGSVRLNRLECSVSDLPGYSEGTWWVQDFAAALPACLLGTLRG 254 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL + GA+VTA+++S R+++L+ N++RLH I + D ++ Sbjct: 255 KRVADLCASPGGKTAQLALQGAQVTAIELSANRVKRLKENMERLHFS-VHIWQGDVRNFH 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P +LFDAVL+DAPCSSTGTIRRHPD+LWT+ DDIVK A Q LL+ IS VK GG +V Sbjct: 314 PTQLFDAVLLDAPCSSTGTIRRHPDILWTKSRDDIVKLAALQHDLLVAAISLVKVGGRIV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 FSNCSL +++ E++++K+L + V L Y + + L G +R TP Sbjct: 374 FSNCSLAREEGEDLIEKILSTRNDIV----LEPIYPEEMGALAHLLCGGMLRTTPADFCH 429 Query: 423 IDGVSS-----GMDGFFAVALRRLI 442 + + GMDGFFA LR++ Sbjct: 430 KNFDAEKTAFLGMDGFFAARLRKIA 454 >gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426] gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426] Length = 444 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 119/460 (25%), Positives = 197/460 (42%), Gaps = 38/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L + +K L+ L RD L+ IV T++ +D Sbjct: 1 MNVRELALDTLLAIEQKGAYSHLQLNEAIQKGR---LDGRDAALLTEIVYGTVQRRDTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L L R + ++ LLR+++ Q++YLD V D A V AVE AKR + +R A L Sbjct: 58 YYLAPFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKR-RGHRGIASL 115 Query: 124 VNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR + RE + + +R+A + PEW R YG E + + + P Sbjct: 116 VNGVLRAIGREGLPSIEAVDDAGKRLALATSHPEWLVRRWIQQYGYEEAARMCETNLRPP 175 Query: 177 YIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 V T L A+ ++ ++ F G +QD Sbjct: 176 QSTARVNRLRATVEEALERLRAEGMQAIPGHVAPEAIRAEKGNLAHTETFRAGWLTIQDE 235 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + VLD CAAPGGKT + +V A+D+ +R++ + R Sbjct: 236 SSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHERKVMMIEQQAKR 295 Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + +D+ + FD VLVDAPC+ G IRR P++ +T+ D I Sbjct: 296 LGLDNVATLALDSRRLGERFAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVE 355 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+ +L +K GG +V+S C+++++++EE + + L P L + + Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTVEREENEEAIARFLADHPDFFLDASLAERMPEPVR 415 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + G +++ P + DGFF LR+ + Sbjct: 416 PHV---KGGMLQLLPHHFDS--------DGFFIARLRKKV 444 >gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis Bem] gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis Bem] Length = 448 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 112/466 (24%), Positives = 190/466 (40%), Gaps = 43/466 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S N R + +L + +++ L+D E ++ D+ L+ +V LR Sbjct: 1 MSSK-NPRRAAFDILLRIEKEKSFADILIDHELSK---DIIKGADRGLLTELVYGVLRRQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ + + ++ LLR+ + Q +LD V A V+ V AK Sbjct: 57 GTLDYIISQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKE--LAPR 114 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + +N++LR + +A P W ++ + G E ++ Sbjct: 115 ASGFINAVLRNADRGRDTIAYPDRAERPAEYLAARYSHPAWLAQQWCDQLGLEAAEELAA 174 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEG 221 A P + + V E +L + I LP F +G Sbjct: 175 AMSEPPPLTVRVNTLRITREELIQRLAGEGVSCSATSWSPDGIRLNQSGQITRLPSFRDG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 ++ VQD S+ + VLD CAAPGGKT Q+ + ++ A DV+ ++L Sbjct: 235 LFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKTTQIAQLMQDSGEIYACDVNNKKLRL 294 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 ++ DRL + + MDA + F +LVDAPCS G IRR+P+ W++ D Sbjct: 295 IKETCDRLGINSVRTFTMDATAPSNAIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGD 354 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+++ A Q +L +++P G ++++ CS Q++E VV L P V + Sbjct: 355 DLLQLARTQVSILENLCRYLEPKGTILYATCSTSVQENEYVVDSFLAQHPEFV----VED 410 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A + G+ R P GMDGFF+ L+R Sbjct: 411 LRPLFPQYAPLFTERGFFRSWPH--------RDGMDGFFSARLKRK 448 >gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16] gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16] Length = 444 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 118/459 (25%), Positives = 196/459 (42%), Gaps = 38/459 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L + +K L+ L RD L+ IV T++ +D Sbjct: 1 MNVRELALDTLLAIEQKGAYSHLQLNNAIQKGR---LDGRDAALLTEIVYGTIQRRDTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L L R + ++ LLR+++ Q++YLD V D+A + AVE AKR + +R A L Sbjct: 58 YYLTPFL-RKARRLEQWVRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKR-RGHRGIASL 115 Query: 124 VNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR + RE + +R+A + PEW R YG E + + + P Sbjct: 116 VNGVLRTIGREGLPSLDAINDSAKRLAVATSHPEWLVRRWIEQYGPEETARMCETNLRPP 175 Query: 177 YIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 V T L AV ++ + F G +QD Sbjct: 176 QSTARVNRMRATVEEALERLGSEGVKAVRGLLAPEAIRAENGNFAHTEAFHSGWLTIQDE 235 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + VLD CAAPGGKT + +V A+D+ + +++ + R Sbjct: 236 SSMLVARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLIEQQAQR 295 Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + +D+ + + FD +LVDAPC+ G IRR P++ +T+ DD+ Sbjct: 296 LGLDNIRTLALDSRRLGEWFAPESFDRILVDAPCTGFGVIRRKPEIKYTKGNDDVAALVE 355 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+ +L +K GG +V+S C+++++++EE + + L P L D Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTIEREENEEAIARFLADHPDFSLDDRLVERLP---D 412 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G +++ P + DGFF LR+ Sbjct: 413 AVRPYVQKGMLQLLPHYFDS--------DGFFIARLRKK 443 >gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella multacida DSM 20544] gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella multacida DSM 20544] Length = 452 Score = 283 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 103/462 (22%), Positives = 185/462 (40%), Gaps = 41/462 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V L L ++D+ V +V ++ +D Sbjct: 3 KARETAVRILYEVHENGAYANVALAKALR---QLDLGEQDRRFVTELVYGAVKAGGTLDW 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L + + + + ++++LR+ + QI YLD V A + AV+ AK + + V Sbjct: 60 ILRRYVSRPVRKIQPFVREILRLGLYQIFYLDKVPASAACNTAVDLAKGM-GVKGLSGFV 118 Query: 125 NSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR K + +A S PEW +G E + Sbjct: 119 NAVLRTAVREPEKAAFPSGKGHATENLALRSQHPEWLVRHWVRTFGFEAAEKLCAFDNEQ 178 Query: 176 LYIDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + + L + L ++ +L EG VQ Sbjct: 179 PVLSVRANTLRTDREALLAELAAAGAEAEPSQWAPEGILVRHHGALDALAPLQEGRCQVQ 238 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + + G ++D CAAPGGKT + + ++ A D+ +L+++ N Sbjct: 239 DESSMLVAHVVGPQPGEFIIDCCAAPGGKTTHMAALMHDEGRILAGDIYSHKLQRIEENA 298 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + + + E+DA + + + D VLVDAPCS G +RR PD W + +I Sbjct: 299 ARLGIQSIETEEIDAREIGEQYEAMADRVLVDAPCSGLGVLRRKPDARWRKTQQEIAALP 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L VKPGG++V+S C+++ +++ VV + L P EL + Sbjct: 359 DLQLAILESAARAVKPGGVLVYSTCTIELAENQGVVSRFLEQHP-EFELE----TTGHYL 413 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + +++ P + G DGFF ++++ Q Sbjct: 414 PLPTKHAESKMVQLLPHI--------DGTDGFFICRMKKMDQ 447 >gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF] gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF] Length = 444 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 104/461 (22%), Positives = 200/461 (43%), Gaps = 41/461 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR + +L + + L+ ++ + D+ V +V + L ID Sbjct: 1 MKARESALKVLYAITEQEAYSNIALNQQFRAETH---TPVDKAFVTELVYGVVENLIWID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 V+D + + LLR+++ QI +LD V +A V+ +V+ +K+ ++ Sbjct: 58 YVIDQFSTTKTIKMNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKYCKHTTA--F 115 Query: 124 VNSILRRVSREKIELL---------QRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 +N +LR + R+K + Q ++ P+W ++ + E ++ A Sbjct: 116 INGVLRNILRKKEIIRLPDKSRDLLQYLSVKYSHPKWLVQQFMAQFDDEFTESLLKANNE 175 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWV 225 + + V IE L + + +I L + +G ++ Sbjct: 176 RPDLYVRVNTLKISIEDCITALREKGITVEQSPYIEEALKVKGIHTIEKLDLYLKGQIYI 235 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + ++ ++D+C+APGGK L + + +V A DV + +L+ ++ N Sbjct: 236 QDFSSMLVARIMDPHPGALIMDVCSAPGGKATHLAQLMGNQGEVVARDVHEHKLKLIKEN 295 Query: 283 LDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + RL + DA + P D VL+DAPCS G IRR P++ + + +DI + Sbjct: 296 VKRLGVKIIKTEVFDAKELDPTMLQRADGVLIDAPCSGLGIIRRKPEIKYRKKQEDIKEL 355 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L G +VKPGG +V+S C++D +++ V+++ L+ + EL +N Y Sbjct: 356 QQLQIEILNHGAEYVKPGGTLVYSTCTIDPRENHHVIKQFLKEN-NEFELEDINEKYKAL 414 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E +++ P + DGFF L + Sbjct: 415 LP---GQHSEQMVQLYPHV--------HHTDGFFIAKLIKK 444 >gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782] gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782] Length = 467 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 104/457 (22%), Positives = 203/457 (44%), Gaps = 38/457 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L + + ++ + R + D+ +V T+++L +ID + Sbjct: 24 ARETALKILYDITENQAYSNISVNRHLDNDKLREI---DRSFATELVYGTVKWLLQIDYI 80 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L + ++ +LR+ V Q+L+ D + A + AVE AKR ++ ++ VN Sbjct: 81 IGKYSSVKLKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKRY-GHQASSRFVN 139 Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 ++LR +S+ + + P W ++ YGKE + + Sbjct: 140 AVLRNISKNIDNIPYPDKSDIASYLSIFYSHPVWMVQKWIELYGKEFTEELLKSNNQVPD 199 Query: 178 IDLTVK---FDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + D +T L+ + + P SI +L F +G + VQD Sbjct: 200 FIIRTNTLKTDRQTLLDLLHKEGINAEPGRYIEEAVILKNPSSISNLETFKKGYFQVQDE 259 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + ++ +V+D+C+APGGK ++ + V A D+ + +L + + R Sbjct: 260 SSMLAGKILDPKEGETVIDVCSAPGGKATHIAQIMNNNGTVLARDIYEHKLNLIEQSCRR 319 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + DA D D VL+DAPCS G IR+ PD+ ++R +++ + Sbjct: 320 LGIDIIKTEIHDACDIDENLIGKADRVLIDAPCSGLGIIRKKPDIKYSRTENELKEITDL 379 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+K+L ++K GG +++S C++ Q++ E+VQ L + +L ++D+ Sbjct: 380 QQKILNIAARYLKVGGYLIYSTCTIQPQENLEIVQDFLAKN-AGFKLSGFRELMPSALDI 438 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S EG+I++ P++ + DGFF ++R Sbjct: 439 SS--SEEGYIQLYPNINQ--------TDGFFISKIKR 465 >gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3] gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3] Length = 444 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 119/460 (25%), Positives = 196/460 (42%), Gaps = 38/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L + +K L+ L RD L+ IV T++ +D Sbjct: 1 MNVRELALDTLLAIEQKGAYSHLQLNEAIQKGR---LDGRDAALLTEIVYGTVQRRDTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L L R + ++ LLR+++ Q++YLD V D A V AVE AKR + +R A L Sbjct: 58 YYLAPFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKR-RGHRGIASL 115 Query: 124 VNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR + RE + + +R+A + PEW R YG E + + + P Sbjct: 116 VNGVLRAIGREGLPSIEAVDDAGKRLALATSHPEWLVRRWIQQYGYEEAARMCETNLRPP 175 Query: 177 YIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 V T L A+ ++ ++ F G +QD Sbjct: 176 QSTARVNRLRATVEEALERLRAEGMQAIPGHVAPEAIRAEKGNLAHTETFRAGWLTIQDE 235 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + VLD CAAPGGKT + +V A+D+ + ++ + R Sbjct: 236 SSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKR 295 Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + +D+ + FD VLVDAPC+ G IRR P++ +T+ D I Sbjct: 296 LGLDNVATLALDSRRLGERFAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVE 355 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+ +L +K GG +V+S C+++++++EE + + L P L K + Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVR 415 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + G +++ P + DGFF LR+ + Sbjct: 416 PHV---KGGMLQLLPHHFDS--------DGFFIARLRKRV 444 >gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842] gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842] Length = 444 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ SA + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +VLD CAAPGGKT + KV +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPNEGETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+ K L+ P E + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYINEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7] gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium carboxidivorans P7] gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7] gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium carboxidivorans P7] Length = 442 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 200/456 (43%), Gaps = 41/456 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ E S ++ +D+ LV IV TL++ ID + Sbjct: 4 ARKTAVKILKEVFYGNSYSNMVIGKELNRS---DMNDKDKALVTEIVYGTLKYKYTIDTI 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L++ + S L + + +LR+S+ QI YLD + ++AVV+ AVE AKR + A+LVN Sbjct: 61 LNYYIKSGLKKLDVDILNILRISIYQIRYLDKIPEFAVVNEAVELAKR--KAVKTARLVN 118 Query: 126 SILRRVSREKIELLQR-------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R + P+W N YGKE I I Sbjct: 119 GVLRSYLRSNNIDYYNKNSDIEKMCFDYSFPKWMVSLFSNQYGKEETKKILQGLNEVPAI 178 Query: 179 DLTVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + + +I + P F G+ VQD S Sbjct: 179 TVRVNNLKTNYEEAWEELKKNGYDIEEGKVCPEAIIINRGRNIENNPLFKNGLITVQDES 238 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + N++VLDLC+APGGKT + + K+ A D+ + +L ++ N RL Sbjct: 239 AMMVAPSMELKENMTVLDLCSAPGGKTCHIAELTNNQGKIFAFDIHENKLPLIKENAKRL 298 Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + +D + ++ D VL+D PCS G IR+ P++ W +D + + Q Sbjct: 299 GITNVKCGTLDASKYMDIYEEKGDRVLIDVPCSGLGIIRKKPEIKWNKDKESLESLVKIQ 358 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + ++L +VK G ++++ C+L+K+++EE ++ ++ P ++ P+ +I Sbjct: 359 KTIMLNAAKYVKKNGKLIYATCTLNKEENEENIKWFIKKRP-DFQIEPIYYGKLDNI--- 414 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG+I I P+ MDGFF + R Sbjct: 415 -IYHDEGYITILPNKY---------MDGFFIAKMIR 440 >gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Microcoleus chthonoplastes PCC 7420] gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Microcoleus chthonoplastes PCC 7420] Length = 448 Score = 282 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 125/461 (27%), Positives = 204/461 (44%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + LD + L++ D+ L+ +V T R +DA Sbjct: 3 NPRQLAFLALRDIHSHGAFTDIALDRVLRHT---TLNRPDRALLTDLVYGTTRHTRTLDA 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D + ++ L+ +L + + Q+ YL + A V+ +VE AK ++ + A +V Sbjct: 60 LIDQLGKKKAHQQPPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELAKANQL-KGLAGVV 118 Query: 125 NSILRRVSREKIELLQRIA------------GISIIPEWFKERLENFYGKERVLAISDAC 172 N +LR+ +R + P+W E N G E A+ Sbjct: 119 NGVLRQYARLNTNPQLDDPLQLPPQPIQRLGILYSFPDWIIELWLNQLGIEETEALCQWF 178 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGV 222 P IDL + I+T + A +R + SI +LPGF EG Sbjct: 179 NQPPTIDLRINPLNASIDTVETAMQAAGIQVQRLPHLPQALRFQGSTGSIQTLPGFNEGW 238 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 W +QD+SA + L + ++D CAAPGGKT L + + A D + RL+K+ Sbjct: 239 WTIQDSSAQLVSHLLNPQPHDVIIDACAAPGGKTTHLAELMRDRGTIWACDKAASRLKKV 298 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + N RL L + I D+ D+ + D VL+DAPCS GT+ R PD+ W + Sbjct: 299 KANTQRLQLQSIQICPGDSRDFPQFTQKADTVLLDAPCSGLGTLHRRPDIRWRCTPARVQ 358 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + + Q +LL Q ++VKPGG++V++ C+L Q++E V+Q L P Sbjct: 359 ELSVLQSELLTQTATWVKPGGVLVYATCTLHPQENEAVIQAFLERHLHWCIDAP------ 412 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + +P+GW+++ P MDGFF V L+ Sbjct: 413 -PPTLTAFSTPQGWLKVLPH--------QHQMDGFFMVRLK 444 >gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61] gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52] gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61] gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52] Length = 444 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 194/460 (42%), Gaps = 38/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L + +K L+ L RD L+ IV T++ +D Sbjct: 1 MNVRELALDTLLAIEQKGAYSHLQLNEAIQKGR---LDGRDAALLTEIVYGTVQRRDTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L L R + ++ LLR+++ Q++YLD V D A V AVE AKR + +R A L Sbjct: 58 YYLAPFL-RKARRLEPWVRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKR-RGHRGIASL 115 Query: 124 VNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR + RE + +R+A + PEW R YG E + + + P Sbjct: 116 VNGVLRAIGREGLPSIEAVDDAGKRLALATSHPEWLVRRWIQQYGYEEAARMCETNLRPP 175 Query: 177 YIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 V T L + ++ ++ F G +QD Sbjct: 176 QSTARVNRLRATVEEALERLRAEGMQVIPGHVAPEAIRAEKGNLAHTETFRAGWLTIQDE 235 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + VLD CAAPGGKT + +V A+D+ + ++ + R Sbjct: 236 SSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVMLIEQQAKR 295 Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + +D+ + FD VLVDAPC+ G IRR P++ +T+ D I Sbjct: 296 LGLDNVATLSLDSRRLGERFAPESFDRVLVDAPCTGFGVIRRKPEIKYTKGKDAIAALVE 355 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+ +L +K GG +V+S C+++++++EE + + L P L K + Sbjct: 356 IQQAILRAAAPLLKKGGTLVYSTCTVEREENEEAIARFLADHPDFFLDASLAERMPKPVR 415 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + G +++ P + DGFF LR+ + Sbjct: 416 PHV---KGGMLQLLPHHFDS--------DGFFIARLRKRV 444 >gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus amyloliquefaciens DSM 7] gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208] gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus amyloliquefaciens LL3] Length = 447 Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 131/463 (28%), Positives = 211/463 (45%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R ++ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKK-INVRELALEALEKLEQNQAYSNLLLTSVIKTN---TLSDQDRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S Q+ YL+ + D A + AVE AK+ + ++ Sbjct: 57 IALDYMLKPFIRKP-NKVKPWVIQLLRLSAYQMEYLEKIPDRAAIHEAVEIAKK-RGHKG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN ILR + RE I + + PEW + YG E I Sbjct: 115 IASFVNGILRSLQREGAPSFAEIEDPVLRLSTETSHPEWLVKEWVEAYGFETAEKICRIH 174 Query: 173 ISPLYIDLTVK---FDIETWAHK-----LNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P L V D ET ++ L A +K L SI S F G Sbjct: 175 LVPPKQTLRVNRIKADKETLLNEMENAGLEAEAGDLSPDAIKLLKGSIASTEFFQNGQVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + +VLD CAAPGGK+A + + + +T+LD+ + +++ ++ Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMKNEGSLTSLDLHRHKVKLIQE 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +RL L D MDA FD +LVDAPCS G IRR PD+ +T+ +D Sbjct: 295 GAERLGLTIIDAQTMDARKAGDAFGAERFDRILVDAPCSGFGVIRRKPDMKYTKTPEDSR 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + + Q +L + VK GG +V+S C++D+ ++EEV+ ++ P E P S Sbjct: 355 RLSEIQLGILREIAPLVKKGGTLVYSTCTMDRTENEEVMHAFIQEHP---EFEPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A +G ++I P G DGFF ++R+ Sbjct: 412 RLPEKARPFVQDGSLQILPHYF--------GTDGFFISSMRKK 446 >gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus SAFR-032] gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus SAFR-032] Length = 447 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R V+ L + + + LL D + L+ +D+ L+ +V TL+ Sbjct: 1 MKKS-NVREVALDALIKLEQNQAYSNLLLQSVMKD---KDLADQDKPLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + QLLR+S+ Q++YL+ + D A + AVE K+ + ++ Sbjct: 57 LALDYMLAPFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELTKK-RGHKG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 + LVN +LR V RE + I + + P W + YG E ++ Sbjct: 115 ISSLVNGVLRSVQREGVPAFDDIKDPVKRLSIETSHPLWLVQEWVQSYGFEATESMCRIH 174 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P L V D KL + T LK + SIVS P F EG Sbjct: 175 LVPPKQTLRVNRIKTDRAALKQKLLDAGIETELGDLSEDALKLMKGSIVSTPSFQEGYVT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + +VLD CAAPGGK+ + ++ +LD+ + +++ ++ Sbjct: 235 IQDESSMLVARALDPQPGETVLDACAAPGGKSTHIAERMNDEGQIVSLDLHEHKVKLIKQ 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL+L + +DA FD +L+DAPCS G IRR PD+ +T+ +D Sbjct: 295 AAKRLNLTQIEAKALDARKAKDDYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSPEDSA 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q+ +L + +KPGG +V+S C++D ++++V+ L+ P S Sbjct: 355 RLAIIQQAILKETAPLLKPGGTLVYSTCTMDPSENQQVIHAFLQEHQDF---EPDLSLNE 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G ++I P G DGFF ++R+ Sbjct: 412 RLPEQVAPFVQNGSVQILPHYF--------GTDGFFICSMRKK 446 >gi|316931426|ref|YP_004106408.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599140|gb|ADU41675.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1] Length = 450 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 171/441 (38%), Positives = 254/441 (57%), Gaps = 8/441 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V++KR L L+ + LS RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ +L +L +P + L + AQIL++DV D+A VDL+V + D+ +A Sbjct: 73 LEGLLARLLDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE + + AG +P+W R YG + AI+ A +DLT Sbjct: 133 LVNAVLRRCAREGQPLVEELAAGTPDVPQWLLARWSAHYGADTARAIAQAISHEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L+ +LPTG +R L S+ LPGF EG WWVQDA+A++P +LFG + Sbjct: 193 VKSDPAHWATRLHGEVLPTGTVR-TLLQGSVRMLPGFDEGQWWVQDAAAALPARLFGDIA 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 SV DLCAAPGGKTAQL +GA+VTA+D S R+ +LR NL RL L + DA ++ Sbjct: 252 GKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSLE-VETGVADAAEW 310 Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPC+STGTIRRHPDV W + DI A Q +LL + S ++PGG Sbjct: 311 RGDATAEFDAVLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGG 370 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ E+ + +L + P + P++ A + + ++ +G +R P Sbjct: 371 TLVYCTCSLEPEEGEQAIAVLLAAEP-SMRRQPIDPA--EVAGLTEIVTADGALRTLPCH 427 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L D +G+DGF+A L + Sbjct: 428 LPHSDPRLAGLDGFYAARLMK 448 >gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453] gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453] Length = 460 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 116/458 (25%), Positives = 202/458 (44%), Gaps = 38/458 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ ++L+ V ++ LL+ LS+ D L ++ T+ L +D Sbjct: 14 PRELAMNVLTQVEQEGAYSNLLLNSALQK---ASLSKSDAGLATELIYGTISRLNTLDYF 70 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 LD + + + + ++ LLR+S+ Q++YLD + D+AVV AV AKR + ++ + +VN Sbjct: 71 LDRYVNKGVAKLQPWVRALLRMSLYQVVYLDRIPDHAVVSEAVNLAKR-RGHQGISGMVN 129 Query: 126 SILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR E + +RI+ + P+W ER YG E AI A P Sbjct: 130 GVLRNILRQKADLTIPEDMPAARRISLLHSHPQWLVERWIAQYGTEATEAICAANNEPPA 189 Query: 178 IDLTV---KFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V E + + + + + ++ + +G+ +QD Sbjct: 190 VSVRVNTTMISREEMLKLMGSHGLDATPSPLSPYGIVVKGAGNMALTDWYRDGLISIQDE 249 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + + VLD CAAPGGK+A + + + A D+ + + + R Sbjct: 250 SSMLVAEAIQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIIANDIHTHKGKLISDQASR 309 Query: 286 LHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + + DA D FD +L+DAPCS G IRR PD+ W + +DI + A Sbjct: 310 LGLDSIMTVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSEEDIAEIAA 369 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL S ++PGGI+V+S C+++ ++E VV L + + S Sbjct: 370 LQLRLLESVSSLLRPGGILVYSTCTMEPLENEGVVSAFLEGHAEFA--IADDGLGSLSRL 427 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +L G ++I P DGF+ + R Sbjct: 428 EEKSLLRGGGVQILPQHY--------HSDGFYIARISR 457 >gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena CCY9414] gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena CCY9414] Length = 449 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 200/461 (43%), Gaps = 43/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N R ++ + L V K L+ L D+ L+ +V ++R +D Sbjct: 2 TNPRQIAFNALRDV-HKGAYADVALNRALQKV---TLPNHDRRLLTELVYGSVRRQRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + ++ L+ +L + + Q+ Y + A V+ V+ AK + Sbjct: 58 TLIDQLATKKSHQQPKDLRSILHLGLYQLRYQERIPASAAVNTTVQLAKEN-GFSGLTGF 116 Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR+ R +L + + + P+W + + + D Sbjct: 117 VNGLLRQYIRLAQKLPEPLKLPENPVERLGILHSFPDWIIQVWLDQLDLVETENLCDWMN 176 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVW 223 IDL + IE L + +RL +I +LPGF EG W Sbjct: 177 QTPTIDLRINPLRTSIEEVEAALESAGILTRRVNNCPQALRLIGSTGAIQNLPGFNEGWW 236 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQDASA + L V+D CAAPGGKT + + ++ A D + RL KL+ Sbjct: 237 SVQDASAQLVGYLLHPQAGEVVIDACAAPGGKTTHIAELMGDEGEIWACDRTASRLRKLK 296 Query: 281 CNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N RLHL + I D+ + D +L+DAPCS GT+ RH D W + + + + Sbjct: 297 ENAQRLHLQSIQICTGDSRNLPQFNHRGDRLLLDAPCSGLGTLHRHADARWRQTLESVQE 356 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 + Q +L+ Q FVKPGG++V++ C+L ++E V+ L + P ++ P ++ + Sbjct: 357 LSILQTELISQTSQFVKPGGVLVYATCTLHPAENEGVISTFLANHPQW-QIYPPSADFLD 415 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +P+GW+++ P MDGFF V LR+ Sbjct: 416 S----AYSTPQGWLKVWPH--------RQNMDGFFMVRLRK 444 >gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 444 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 202/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ SA + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +VLD CAAPGGKT + KV +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+ K L+ P E + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYINEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42] gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42] Length = 447 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 131/463 (28%), Positives = 212/463 (45%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R ++ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKK-INVRELALEALEKLEQNQAYSNLLLTSVIKTN---TLSDQDRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S Q+ YL+ + D A + AVE AK+ + ++ Sbjct: 57 IALDYMLKPFIRKP-NKVKSWVIQLLRLSAYQMEYLEKIPDRAAIHEAVEIAKK-RGHKG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN ILR + RE + I + + PEW + YG E I Sbjct: 115 IASFVNGILRSLQREGVPSFAEIEDPVLRLSTETSHPEWLVKEWVEAYGFEAAEKICRIH 174 Query: 173 ISPLYIDLTVKF---DIETWAHK-----LNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P L V D ET ++ L A +K L SI + F G Sbjct: 175 LIPPKQTLRVNHIKSDRETVLNEMENAGLEAEAGDLSPDAIKLLKGSIANTAFFQNGRVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + +VLD CAAPGGK+A + + + +T+LD+ + +++ ++ Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTSLDLHRHKVKLIKE 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +RL L D MDA FD VLVDAPCS G IRR PD+ +T+ +D Sbjct: 295 GAERLGLTIIDAQTMDARKAGEAFGAERFDRVLVDAPCSGFGVIRRKPDMKYTKTPEDSR 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + + Q +L + VK GG +V+S C++D+ ++EEV+ ++ P E P S Sbjct: 355 RLSEIQLGILREIAPLVKKGGTLVYSTCTMDRTENEEVMHAFIQEHP---EFEPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A +G ++I P G DGFF ++R+ Sbjct: 412 RLPEKARPFVQDGSLQILPHYF--------GTDGFFISSMRKK 446 >gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579] gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579] Length = 444 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 204/461 (44%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ SA + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A + ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKLGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +VLD CAAPGGKT + KV +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V++K L+ P E + + Sbjct: 355 TIQIAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLTPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|209965632|ref|YP_002298547.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum centenum SW] gi|209959098|gb|ACI99734.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum centenum SW] Length = 447 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 169/427 (39%), Positives = 242/427 (56%), Gaps = 16/427 (3%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 + +RK + L+ + R L RD+ VR + R L ++DA++ L Sbjct: 34 IQATLRKGVPFDDALE---ANRGVRALEPRDRGFVRLLCATVFRRLGQLDALVQGALAKP 90 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 K +Q +LR+ AQ+L+L +A VD +VE A + + LVN++LRR+SRE Sbjct: 91 GQPVKGPVQDILRLGAAQLLFLGTPAHAAVDTSVELAVA-RGQTPYKGLVNAVLRRLSRE 149 Query: 135 KIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 L + AG P+W YG AI +A ++ +D+TV+ D + WA +L Sbjct: 150 GAGLLAAQDAGRLNTPDWLWLAWRQAYGTGATRAIVEAHLAEPPLDITVRADADLWAERL 209 Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 A LP G +RL + LPGFAEG WWVQDA+A+IP +LFG + VLDLCAAPG Sbjct: 210 GAERLPGGSLRLPAG-GPVTELPGFAEGAWWVQDAAAAIPARLFGDVAGREVLDLCAAPG 268 Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 GKTAQL +GA+VTA+D S++RLE+LR NL RL L + + DA + P DAVL+D Sbjct: 269 GKTAQLAAAGARVTAVDRSEKRLERLRENLARLGLE-VETVAADATAWSPDAPVDAVLLD 327 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+TGTIRRHPDV + +D+ K A Q +LL++ +KPGG++V++ CSL ++ Sbjct: 328 APCSATGTIRRHPDVQRLKTEEDVAKLARVQARLLIRAADMLKPGGLLVYATCSLQPEEG 387 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E V+ +L P LV + + +A A++ G +R TP ++ GMDGF Sbjct: 388 ERQVEALLARRPD---LVRVPVDPAELGGLAGAVTAAGDVRTTPGLIP------GGMDGF 438 Query: 434 FAVALRR 440 FA LRR Sbjct: 439 FAARLRR 445 >gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9] gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9] Length = 521 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 124/466 (26%), Positives = 202/466 (43%), Gaps = 42/466 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ L + R+ +L+ LS+ D L +V TL+ +D Sbjct: 67 AREVALEALVKIEREEAFSNLVLNSALQH---AELSRADAGLATELVYGTLQRRLSLDHA 123 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + + + QLLR+S Q+L+LD + +A V+ AV AKR + + + +VN Sbjct: 124 LSALAAKGLGKLEPWVLQLLRLSAYQLLFLDRIPAHAAVNEAVAIAKR-RGHSGISGMVN 182 Query: 126 SILRR------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +LR + RIA PEW R YG+ I A Sbjct: 183 GMLRNLLRRRDELAPEAAAESAARPALRIALRHSYPEWLVARWIAAYGEAAAEQICAAGN 242 Query: 174 SPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 +P + + V T + A + + + S+ GF +G W Sbjct: 243 APPHASIRVNRLRATREEAIAILAESGIEAAKSAVSPAGVVAQRGGSLADTIGFRDGRWT 302 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + Q ++VLD CAAPGGKT L + + +V A DV + + Sbjct: 303 IQDESSMLVAQAARPAAGMTVLDCCAAPGGKTTHLAELMGNEGRVIANDVHPHKQALIEQ 362 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +RL L + + DA + + FD VL+DAPCS G I R P++ WT+ DI Sbjct: 363 QAERLGLTCVEAVTGDAAELGERYSSESFDLVLLDAPCSGLGVIARKPEIKWTKSEGDIR 422 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q+KL+ VKP G +V+S C++D+ +++ + + L+ P + Sbjct: 423 EIAAIQKKLINGVAGLVKPDGRLVYSTCTIDRDENDRQISQFLKDHPEYTLDAEWPAELL 482 Query: 399 KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +S+ A A+ E G +++ P+ G DGF+ LR+ Sbjct: 483 ESLRSAGAVQGEFTGALQLLPNHF--------GSDGFYIATLRKRT 520 >gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1134] gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264] gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171] gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1134] gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264] gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171] Length = 444 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 203/461 (44%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ SA + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKVTVEEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +VLD CAAPGGKT + KV +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPNTGDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V++K L+ P E + + Sbjct: 355 TIQIAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLTPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21] gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21] Length = 448 Score = 281 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 114/466 (24%), Positives = 192/466 (41%), Gaps = 43/466 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S N R + +L + +++ L+D E ++ D+ L+ +V LR Sbjct: 1 MSSK-NPRRAAFDILLRIEKEKSFADILIDHELSK---DIIKGADRGLLTELVYGVLRRQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ + + ++ LLR+ + Q +LD V A V+ V AK Sbjct: 57 GTLDYIISQFSKQRPEKLELFVRLLLRLGIYQCFFLDRVPVSAAVNETVNLAKE--LAPR 114 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 + +N++LR R + + A P W ++ + G E ++ Sbjct: 115 ASGFINAVLRNADRGRDTITYPDRAARPAEYLAARYSHPAWLAQQWCDQLGLEAAEELAA 174 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEG 221 A P + + V E +L + I LP F +G Sbjct: 175 AMSEPPPLTVRVNTLRITREELIRRLVGEGVSCSATSWSPDGIRLNQSGQITRLPSFRDG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 ++ VQD S+ + VLD CAAPGGKT Q+ + ++ A DV+ ++L Sbjct: 235 LFTVQDESSQLAPLFLAPGKGERVLDACAAPGGKTTQIAQLMQDSGEIYACDVNNKKLRL 294 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 ++ DRL + + MDA + F +LVDAPCS G IRR+P+ W++ D Sbjct: 295 IKETCDRLGINSVRTFTMDATAPSNAIKETTFHRILVDAPCSGLGVIRRNPEGKWSKSGD 354 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+++ A Q +L +++P G ++++ CS Q++E VV L S P V + Sbjct: 355 DLLQLARTQVSILENLCRYLEPKGTILYATCSTSIQENEYVVDSFLGSHPEFV----VED 410 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A + G+ R P GMDGFF+ L+R Sbjct: 411 LRPLFPQYAPLFTERGFFRSWPH--------RDGMDGFFSARLKRK 448 >gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801] gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801] Length = 451 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 213/467 (45%), Gaps = 44/467 (9%) Query: 1 MKSG---MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + +AR ++ +L + R+ +D + LS D+ LV +V + Sbjct: 1 MSNSDQITHARPLALVILREIERRGTFTDIAIDRGLKST---DLSGSDRALVTELVYGIV 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 R +D ++D + + ++ L+ +L + + Q+ YL + A V+ AV AK + Sbjct: 58 RRKRTLDTLIDQLGKKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSL 117 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVL 166 + + +VN ILR+ R E + + P++ + +G E Sbjct: 118 -QRLSGVVNGILRQYIRLAQENNDPLILPDDPISRLGVLYSFPDFMIKLWLEQWGLETTE 176 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPESIVSLPG 217 + + P +D+ + T + G+RL+ +I LPG Sbjct: 177 ELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQGLRLQGKTGAIQDLPG 236 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274 F EG W VQD+SA + L + ++D CAAPGGKT + + + A D Sbjct: 237 FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTHIAELMGDQGTIWACDRYAS 296 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 RL+KL N +RL L + I+ D+ + + D VLVDAPCS GT+ RHPD+ W + Sbjct: 297 RLKKLSANKERLQLNSIKIVTGDSRQLDQFQGIADRVLVDAPCSGLGTLHRHPDIRWRQT 356 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + I + A Q++LL ++VKP GI+V++ C+L Q++E V++ L S P VP Sbjct: 357 PEKIEELAILQKELLETTANWVKPQGILVYATCTLTYQENEGVIEHFLASHPHWKIDVPS 416 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ +A ++ G I+I P + MDGFF V L++ Sbjct: 417 PNS-----PVAKWMTASGSIKILPHQQD--------MDGFFMVKLKK 450 >gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241] gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241] Length = 444 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAIALLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P + + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWDTTIKERMPEKL 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 415 G---SYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L] gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L] Length = 444 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTSEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P + + + Sbjct: 355 TIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWDTTIKDRMPEKL 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 EG ++I P DGF+ LR+ + Sbjct: 415 ---SPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar finitimus YBT-020] Length = 444 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLATATSHPVWLVQEWASEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIERGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802] gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802] Length = 451 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 211/467 (45%), Gaps = 44/467 (9%) Query: 1 MKSG---MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + +AR ++ +L + R+ +D + LS D+ LV +V + Sbjct: 1 MSNSDQITHARPLALVILREIERRGTFTDIAIDRGLKST---DLSGSDRALVTELVYGIV 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 R +D ++D + + ++ L+ +L + + Q+ YL + A V+ AV AK + Sbjct: 58 RRKRTLDTLIDQLGKKASHQQPPDLRLILYIGLYQLRYLSQIPPSAAVNTAVNLAKENSL 117 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVL 166 + + +VN ILR+ R E + + P++ + +G E Sbjct: 118 -QRLSGVVNGILRQYIRLAQENNDPLILPDDPISRLGVLYSFPDFMIKLWLEQWGLETTE 176 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPESIVSLPG 217 + + P +D+ + T + G+RL+ +I LPG Sbjct: 177 ELCNWFNQPPVLDIRINPLKTTLEEVKTTLSQGNLTLMPLEIPQGLRLQGKTGAIQDLPG 236 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274 F EG W VQD+SA + L + ++D CAAPGGKT + + + A D Sbjct: 237 FKEGWWTVQDSSAQLVSHLLDPQPSEVIIDACAAPGGKTTHIAELMGDQGTIWACDRYAS 296 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 RL+KL N +RL L + I+ D+ + + D VLVDAPCS GT+ RHPD+ W + Sbjct: 297 RLKKLSANKERLQLNSIKIVTGDSRQLDQFQGIADRVLVDAPCSGLGTLHRHPDIRWRQT 356 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + I + A Q++LL ++VKP GI+V++ C+L Q++E V++ L S P VP Sbjct: 357 PEKIEELAILQKELLETTANWVKPQGILVYATCTLTYQENEGVIEHFLASHPHWKIDVPS 416 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A ++ G I+I P + MDGFF V L++ Sbjct: 417 PDS-----PAAKWMTASGAIKILPHQQD--------MDGFFMVKLKK 450 >gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Western North America USA6153] Length = 444 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P WF + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWFVQEWTAEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +LD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus atrophaeus 1942] gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus atrophaeus 1942] Length = 447 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 206/463 (44%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R ++ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKKN-NVRDIALEALMKLDQNQAYSNLLLKSVIKSN---ELSDQDRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S+ Q+ YL+ + A + AVE AK+ + ++ Sbjct: 57 TALDYMLKPFINKP-AKVKPWVIQLLRLSLYQMEYLEKIPHRAAIHEAVEIAKK-RGHKG 114 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN +LR V RE + + R+A + PEW + YG + I Sbjct: 115 IASFVNGVLRSVQREGVPSFAAINDPVTRLATETSHPEWLVKEWAEAYGFDAAEKICRIH 174 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224 + P L V D + L A + L L SI F G Sbjct: 175 LVPPKQTLRVNQMKTDRDELLESLAAEGIEAEKGDLSPDAVKLLKGSIAGSRFFKNGDVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + G ++LD CAAPGGK+ + + V +LD+ + +++ ++ Sbjct: 235 IQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLSLDLHEHKVKLIKE 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +RL L MDA FD +LVDAPCS G IRR PD+ ++++ +D Sbjct: 295 AANRLGLTIIKPEAMDARKASEAFQDDEFDRILVDAPCSGFGVIRRKPDMKYSKNPEDSA 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +L + VK GG +V+S C++D+ ++EEV+ ++ P E P S Sbjct: 355 RLAKIQLSILREIAPLVKKGGTLVYSTCTMDRTENEEVIHAFIQEHP---EFEPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A G ++I P G DGFF ++R+ Sbjct: 412 RLPEKARPFVRGGSLQILPHYF--------GTDGFFICSMRKK 446 >gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1] gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1] Length = 451 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 123/464 (26%), Positives = 199/464 (42%), Gaps = 40/464 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K ++AR S L V + LD L RD+ L I + + Sbjct: 4 KRKIDAREASLLALQRVEADDAYVNLALDEVLSSH---SLDPRDKRLAAEITYGVITYKL 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D +++ V + + + Q+LR+ Q+ YLD V A V VE K+ K+ R Sbjct: 61 TLDWLIEKVSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHATVELVKKGKK-RGL 119 Query: 121 AKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDA 171 A VN ++R R+K L + P W R N YG E + A Sbjct: 120 APFVNGVMRGALRKKDHLPWPDKKKDSANYLSVRYSHPLWLVRRWLNRYGPEEAEKLVAA 179 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGV 222 + + V D +T +L A + + + L + EG Sbjct: 180 NNQAAPLSIRVNTLRTDRDTLLSELTAAGVEAVPSTVVPEGALLTRSGRLTELAPYREGR 239 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 + VQ SA + ++ +VLD C+APGGKT L + + + ALD+ RLE + Sbjct: 240 FQVQGESAMLTSRVLDPQAGDAVLDGCSAPGGKTTHLAQLMNNSGDILALDIHPHRLELV 299 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + N R+ + +DA + + FD +L+D PCS G IRR PD+ W R DDI Sbjct: 300 KANCRRMGVDIVRTQCLDAREIAKENPDSFDCILLDVPCSGFGVIRRKPDLKWRRSEDDI 359 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 K A Q +L + +KPGG +V+S C+ + ++++EVV+++L++ +VP + Sbjct: 360 RKLAHVQCDMLKAAAAVLKPGGTLVYSTCTNEPEETDEVVEELLKNQDD---MVPDDLRP 416 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D G I + P + G+DGFF L+++ Sbjct: 417 YLPQDWQQDAGKTG-IHLLPHI--------HGVDGFFISRLKKI 451 >gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99] gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99] Length = 444 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 199/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + E + ++R+A + P W + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVNEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +LD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70] gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70] Length = 447 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 206/464 (44%), Gaps = 39/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R V+ L V K LL+ LS+RD L+ IV T++ Sbjct: 1 MKAK-NVREVALETLLAVEEKEAYSNLLLNKMIETHR---LSERDVRLLTEIVYGTIQRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + + ++ LLR+++ Q+LYLD + D A + AVE AK+ + ++ Sbjct: 57 DTLDYYLTPFLKKA-RKLERWVRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKK-RGHQG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A LVN ++R + R+ + L++I A + P W +R YG E + + Sbjct: 115 VASLVNGVMRAIQRQGVPPLEKIEDEVERLAVATSHPLWLVKRWVEQYGLEETKRMCETN 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P V T ++ V+ ++ ++ F G Sbjct: 175 LLPPKQTARVNTARITVEEAIDKLKQEGMEVVLGEVAEEAIQAKRGNLAHTDAFRRGWIT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + G + VLD CAAPGGK+ + + + +V D+ + ++ + Sbjct: 235 IQDESSMLVARALGPKEHERVLDSCAAPGGKSTHIAELMNNTGQVICADIHEHKVNLIEE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N RL L +D+ +++FD +LVDAPCS G IRR PD+ + + DI Sbjct: 295 NAKRLQLTNISARVLDSRRLGEVFEREMFDKILVDAPCSGFGVIRRKPDIKYAKTEADIP 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 QR++L +K GG +V+S C++D+ ++E V+ + L P E P + Sbjct: 355 SLVALQREILHAVAPLLKKGGTLVYSTCTIDRDENEAVIAQFLDDHP---EFSPDETMKR 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + G + + P G DGFF +LR+ + Sbjct: 412 RLPEKVQPYVHNGQLHLLPHYF--------GSDGFFIASLRKKV 447 >gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987] gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987] Length = 444 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWASEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKRV 444 >gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames] gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne] gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam] gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488] gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442] gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193] gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465] gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389] gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174] gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis Tsiankovskii-I] gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W] gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108] gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820] gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. CDC 684] gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. A0248] gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. CNEVA-9066] gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. A1055] gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Kruger B] gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Vollum] gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Australia 94] gi|301055356|ref|YP_003793567.1| sun protein [Bacillus anthracis CI] gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. Ames] gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne] gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam] gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488] gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193] gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442] gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389] gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465] gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174] gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis Tsiankovskii-I] gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W] gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108] gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820] gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. CDC 684] gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis str. A0248] gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI] Length = 444 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +LD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748] gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748] Length = 451 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 99/461 (21%), Positives = 181/461 (39%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + R L LS D+ +V +R +DA Sbjct: 11 NIRLLAVKALSDINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + ++LR+ + QI+Y+D V + A V+ +V+ AK R + V Sbjct: 68 IIIHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAK--NLTRGLSGFV 125 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR V RE + I+ I P W N GK++ + + Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNLWMNEMGKDKTIDLCAWFNEQ 185 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225 + + IE +L + + + +G Sbjct: 186 PRLTARINTIKISIEDCLKELQDLGWTVEQDTYIPEVVYINAHQGHLEKAKPVIDGHITF 245 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + + +LD CAAPGGK+ + + + + + D+ +L+ + N Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLDLMNHN 305 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + D K+ FD VLVDAPCS G +++ D+ W + + + Sbjct: 306 AQRLGVSIVSTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLTEL 365 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VK G +V+S C+++ ++E+V++K L + + P++ Sbjct: 366 PPLQLEILEKAAEMVKVNGYLVYSTCTINSGENEDVLEKFLATHKN-FVIDPVSYEGLPP 424 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S +G I P MDGFF ++R+ Sbjct: 425 -------STDGMITTYP--------PRDHMDGFFMARMKRI 450 >gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus 03BB102] gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus 03BB102] Length = 444 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +LD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLIARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 MIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120] gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120] Length = 449 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 199/461 (43%), Gaps = 43/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N+R ++ L V K LD LS D+ LV ++ ++R +D Sbjct: 2 TNSRQIAFIALRDV-HKGAYTDVALDRALQK---ANLSDIDRRLVTELLYGSVRRQRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + ++ L+ +L + + Q+ Y + A V+ VE AK D Sbjct: 58 FIIDQLAKKKSHQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAK-DNGFAGLTGF 116 Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR+ R + + P+W + G + + Sbjct: 117 VNGLLRQYIRLAEASPDFLELPENPVERLGILHSFPDWIIKVWWEQLGLTETEKLCEWMN 176 Query: 174 SPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V + + A A + +RL SI LPGF++G W Sbjct: 177 QTPTLDLRVNPLLASVAEVETALKSAGVLARPIPHLPQALRLIGNNGSIQKLPGFSQGWW 236 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQDASA + L ++D CAAPGGKT + + KV A D + RL KL+ Sbjct: 237 IVQDASAQLVGHLLDPQPGEVIIDACAAPGGKTTHIAELMKDEGKVWAGDRTASRLRKLK 296 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N RL+L++ +I D+ + + D VL+DAPCS GT+ RH D W + + + + Sbjct: 297 ENAQRLNLHSIEICIGDSRNLPQFYDVADRVLLDAPCSGLGTLHRHADARWRQTPESVQE 356 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 + Q++LL FVK GG++V++ C+L ++EEV+ + + + P + Sbjct: 357 LSMLQKELLAHTSKFVKVGGVLVYATCTLHPAENEEVITEFVAGNSDWQIEPPRPDS--- 413 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +P+GW+++ P + MDGFF V LR+ Sbjct: 414 --PYSAYTTPQGWLKVWPH--------NQDMDGFFMVRLRK 444 >gi|319409409|emb|CBI83055.1| SUN-family protein [Bartonella schoenbuchensis R1] Length = 447 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 204/445 (45%), Positives = 277/445 (62%), Gaps = 9/445 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V + LL V+ K SL+ L D EYG + LS RD++L RAI+ LR + Sbjct: 7 PGLVVRQVCARLLGVVLDKHKSLSGLTDHEYGHPHYLKLSHRDRLLCRAILMAALRHRGQ 66 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I A L L LP + SLQ LL +S AQILYLD+ D+A +DLAV+ AK D R F+ Sbjct: 67 ITAALSRFLKRPLPLQALSLQHLLHISAAQILYLDIPDHAAIDLAVQMAKIDPRTRRFSG 126 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN+ILR +RE + L + I +P WF + L + YG ++ I + +DLTV Sbjct: 127 LVNAILRNFAREAVCLRVQEPTIKDVPAWFGQLLVSTYGVDKAHQILAIQNNAPSLDLTV 186 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L V+LP G IRL L S+V+LPG+A+G WWVQD +A++P L G + Sbjct: 187 KSDSIGWAKRLGGVVLPNGSIRLGALDGSVVNLPGYAQGAWWVQDFAAALPACLLGDIRG 246 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V+D CA+PGGKTAQL + GA VTA++ S RLE+L+ N++RLHL A D D+ Sbjct: 247 KRVVDFCASPGGKTAQLALQGADVTAVESSANRLERLKENMERLHLSA-HYWTGDMRDFY 305 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 ++LFDAVL+DAPCSSTGTIRRHPD+LWT+ +DDI K A Q LLL I+FVK GG ++ Sbjct: 306 SEQLFDAVLLDAPCSSTGTIRRHPDILWTKSSDDITKLAAVQYDLLLAAIAFVKKGGCII 365 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP----- 417 FSNCSL +Q+ E++++K+L + + L P+ + S M LS +G +R TP Sbjct: 366 FSNCSLARQEGEDLIKKILSTR-DDIILEPILAEEMGS--MKHLLSSDGTLRTTPADCCY 422 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 D + D + GMDGFFA LR++ Sbjct: 423 DNCDVEDPLLFGMDGFFAARLRKVA 447 >gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97] gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97] Length = 444 Score = 279 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEGAITLLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187] gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1] gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187] gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1] Length = 444 Score = 279 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 201/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEGAIALLASEGIEAKRGDLSDDAIQIEKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLGNVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. oral taxon 158 str. F0412] gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. oral taxon 158 str. F0412] Length = 451 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 102/461 (22%), Positives = 186/461 (40%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + R L LS D+ +V +R +DA Sbjct: 11 NIRLLAVKALSDINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + ++LR+ + QI+Y+D V + A V+ +V+ AK+ R + V Sbjct: 68 IIVHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR V RE + I+ I P W N GK++ + + Sbjct: 126 NAVLRSVLRECDSISIGELAKSEAEEISFIYNQPLWLVNLWMNEMGKDKTVDLCAWFNEQ 185 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225 + + I+ +L + + + EG Sbjct: 186 PRLTARINTVKVSIDDCIKELQNLGWTVEQDKDIPEVVYINSHQGHLEKAKPVIEGHITF 245 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + + +LD CAAPGGK+ + + + + + D+ +L+ + N Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLDLMNQN 305 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + D K+ FD VLVDAPCS G +++ D+ W + D + + Sbjct: 306 AERLGVSIVSTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKSEDLLNEL 365 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VK G +V+S C+++ ++E+V++K L + V ++ +K Sbjct: 366 PPLQLEILEKASEMVKVNGYLVYSTCTINSGENEDVLEKFLATHKNFV----IDPVSYKG 421 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A +G I P MDGFF ++RL Sbjct: 422 LPPA----KDGMISTYP--------PRDHMDGFFMARMKRL 450 >gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2] gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2] Length = 444 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 123/456 (26%), Positives = 204/456 (44%), Gaps = 38/456 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R V+ L + + + LL + LS +D+ L+ +V TL+ +D +L Sbjct: 2 REVALDALIKLDQNQAYSNLLLQSAMKAN---DLSDKDRGLLTELVYGTLQNKLALDYML 58 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + K + LLR+S+ Q+ YL+ + D A + AVE AKR + ++ + VN Sbjct: 59 KPFIKKP-EKVKDWVIHLLRMSLYQMEYLEKIPDRAALFEAVEIAKR-RGHKGISSFVNG 116 Query: 127 ILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +LR V RE + IA + PEW + YG E I + P Sbjct: 117 VLRSVQREGVPSFADIADPIERLAVETSHPEWLVREWTDAYGFEAAEQICRIHMIPPKQT 176 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWVQDASAS 231 + V D +T +LN + L + L +I S P F EG +QD S+ Sbjct: 177 IRVNRLKNDRDTLLSRLNEAGIEAEEGDLSKDAVKLLKGTIASTPFFKEGEVTIQDESSM 236 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + G +VLD CAAPGGK+ + KV +LD+ + +++ ++ R+ L Sbjct: 237 LVARALGPERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKVKLIKEAAGRIGL 296 Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +DA + FD +LVDAPCS G IRR PD+ +++ +D + A Q Sbjct: 297 SNIEARALDARKAGEVFEPEQFDRILVDAPCSGFGVIRRKPDLKYSKTPEDSARLAGIQL 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L + +K GG +V+S C++D ++E+V+ L E + + + A Sbjct: 357 AILNEIAPLLKTGGTLVYSTCTMDPTENEQVMHAFLEEHD---EFEADPTLAERLPEKAA 413 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I+I P G DGFF ++R+ Sbjct: 414 PYVKDGSIQILPHYF--------GTDGFFICSMRKK 441 >gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680] gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680] Length = 460 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 199/460 (43%), Gaps = 38/460 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +LL V K +D E LV +VN T+R +D V Sbjct: 11 PREVALNLLYRVEHKGAYANLAVDRELDRYEDNG---SQHALVTELVNGTVRMRKHLDWV 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L+ L + ++ L+++LR+SV Q+L++D V +YAVV+ AV A R K +R + +VN Sbjct: 68 LNLFLSKPIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLAGR-KLDRGLSAVVN 126 Query: 126 SILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +LR ++ ++ PEW R YG + + + Sbjct: 127 GVLRNVIRNRGEIPYPDMYQNPVEYLSVYYSHPEWMVARWVERYGLKGACQLLEHNNVRP 186 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQ 226 + L D E L G+ ++E + + L + EG ++VQ Sbjct: 187 RVALRTNLLKVDREELFRSLTDEGCRCTLSCLTPWGVWVEETGKPLRKLHSYREGWFYVQ 246 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + V DL A GGKT+ L + + + A+++ +++E L+ N+ Sbjct: 247 DDASMLVSAACAPEAGQVVYDLAAGVGGKTSHLAELMGNQGIIRAVEILPKKVEILKENI 306 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + DI DA D VL+DAPCS G +RR D W + DI + Sbjct: 307 RRLGITIVDIWTGDALGPLAPGWGEGDVVLLDAPCSGLGVLRRRSDARWRKSEKDITVLS 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKS 400 Q++LL +G V+PGG++V+S C+L+ +++EEV+ L + ++ + ++ Sbjct: 367 ELQKRLLKRGAQLVRPGGVLVYSTCTLEPEENEEVIDWFLGEETGFVLDDLSQPLRFFPF 426 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G + + P G DG F LRR Sbjct: 427 SPEDAKAASRGMLVLFP--------PRYGTDGMFIARLRR 458 >gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.] Length = 450 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 201/465 (43%), Gaps = 43/465 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 + R ++ L+ + +K+ +L LL+ L +R++ L A+V LR+ R+D Sbjct: 2 HDTRSLAIQFLNSLDKKKHTLDSLLEEFQNKYI---LPKREKALFNALVYGVLRWRSRLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + + +LR+ + QI++L + A V+ +VE AK + + Sbjct: 59 WIIRQFSKQPPEKTNTEILNILRIGLFQIIHLNRIPVSAAVNTSVEIAKHTVGTK-CSGY 117 Query: 124 VNSILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACIS 174 VN++LRR RE L PEW +R + GK + + DA + Sbjct: 118 VNAVLRRTVREYKSLCFPDMDKKTEYGISVNKSFPEWMIKRWVSLLGKNSAIDLCDAINN 177 Query: 175 PLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 I + V IE+ + GG+ E I + F +G + Sbjct: 178 IPPITVRVNTLKTNRDELISCIESETQDIRPTDCSPGGVSFSRPKELISEMEAFKKGGFQ 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 VQD +A + L V+D CA GGKT + + + +TA+D K +L +L Sbjct: 238 VQDEAAQLAAFLMDPQPGEKVMDACAGLGGKTGHIGQLMENKGYITAIDKDKEKLFRLSL 297 Query: 282 NLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 +++RL + D F FD +L+DAPCS+ G IRR+PD+ W D + Sbjct: 298 DMERLGITNVTTSAGDFGDPVFLKSYSGKFDRILIDAPCSNMGVIRRNPDIKWKLTEDKL 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q L +KP GI+V++ CS + +++EEV+ K L P ++ + Sbjct: 358 LFYQKRQFLFLDNIAMLLKPAGIIVYAVCSTETEENEEVINKFLLKHPDFT----IDDMH 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ +G+IR P + MDGFF L+R+I Sbjct: 414 CFPKIFEPFVNSDGFIRTYPHL--------HNMDGFFLARLKRII 450 >gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10] gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10] Length = 442 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 121/454 (26%), Positives = 205/454 (45%), Gaps = 39/454 (8%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 ++L+ V ++ LL+ S L++ D L ++ T+ L +D LD + Sbjct: 1 MNVLTQVEQEGAYSNLLLNSALQKS---SLAKSDAGLATELIYGTISRLNTLDYFLDKFV 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + ++ LLR+S+ QI+YLD + D+AVV AV AKR + ++ + +VN +LR Sbjct: 58 NKGVRKLQPWVRALLRISLYQIVYLDRIPDHAVVSEAVNLAKR-RGHQGISGMVNGVLRN 116 Query: 131 V--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + E + QRI+ + P+W ER + YG E AI A P + + V Sbjct: 117 ILRQKETLAIPEDMTDAQRISLLHSHPQWLVERWISQYGTEATEAICAANNEPPAVSVRV 176 Query: 183 ---KFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + + L + + ++ + EG+ +QD S+ + Sbjct: 177 NTTMISRDDMLKLMGNHGLDASPSSVSPYGIVVKGAGNMALTDWYREGMISIQDESSMLV 236 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + VLD CAAPGGK+A + + + A D+ + + + RL L + Sbjct: 237 AEAVQPEPGMRVLDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKGKLISDQASRLGLDS 296 Query: 291 EDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 I+ DA D FD +L+DAPCS G IRR PD+ W + +DI + A Q +L Sbjct: 297 ISIVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRL 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + ++PGGI+V+S C+++ +++E VV L A + + +L Sbjct: 357 LESVSTLLRPGGILVYSTCTIEPRENEGVVSAFLEGHSEFAIAEDGLGALSRLGE--NSL 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 + G I+I P DGF+ L RR Sbjct: 415 ARGGGIQILPQHY--------HSDGFYIARLGRR 440 >gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs] gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs] Length = 445 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 103/461 (22%), Positives = 187/461 (40%), Gaps = 41/461 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + +L + L+ E + ++ LL D+ L+ +V L ID Sbjct: 1 MNPREGALKVLYEINVNEAFSNIALNKELNNESYNLL---DRNLLTELVYGVLENQIYID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 VL L + LLR+ + Q+L+LD V +A V+ V +K+ + Sbjct: 58 HVLSQFSNFQLDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC--KKTTGF 115 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 +N +LR V R + + ++ PEW + + V + A Sbjct: 116 INGVLRNVQRNRNNIKMPKPEKNRIKYLSIRYSHPEWLVQLFLKHFDVNFVEELLKANNK 175 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWV 225 + L + + L A ++ + +I + +G + Sbjct: 176 KPDLYLRINTLKISVADCIQLLEAEGYVVEQSKIVEEAIVVKGIHNIEKTDFYKKGYIQI 235 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + + V+D+C+APGGKT + + + K+ A D+ + +L+ + Sbjct: 236 QDISSMLVAKALAPKEGELVMDICSAPGGKTTHIAQLMNNKGKIIARDIHEHKLKLIDRT 295 Query: 283 LDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL ++ D D D VLVDAPCS G IRR P++ + ++ DI Sbjct: 296 AKRLGIHIIQTEKFSGDHLDESFIHKADKVLVDAPCSGLGIIRRKPEIKYRKEAQDITSI 355 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK G +V+S C+++ ++++ +VQK L L + Sbjct: 356 VELQYKILKTAAQYVKIEGTLVYSTCTINPEENDHIVQKFLEQHQNYT----LVHLNNEY 411 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + + I++ P++ +G DGFF +R+ Sbjct: 412 QDIILQEPNKATIQLYPNI--------NGTDGFFIAKFKRI 444 >gi|254472533|ref|ZP_05085933.1| SUN protein [Pseudovibrio sp. JE062] gi|211958816|gb|EEA94016.1| SUN protein [Pseudovibrio sp. JE062] Length = 415 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 171/417 (41%), Positives = 245/417 (58%), Gaps = 6/417 (1%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 L C LDL G ++ L D+ LVRAI+ LR +I V+D L +P K + Sbjct: 2 PLDCELDLNNGHPGYKRLEPNDRALVRAIIGTALRRRGQIQDVIDRFLDRPIPEKTGRVL 61 Query: 84 QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL-QRI 142 +L V++AQ+ ++ V D+A V LAV A RD + + LVN++LRR +RE ++ ++ Sbjct: 62 DILHVAMAQLFFMSVPDHAAVSLAVTLAGRDGRAKPYKNLVNAVLRRATREGAAIIAEQD 121 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 A PEW R YG+E A+S A ++ Y+DLTV D E WA KL + Sbjct: 122 AEKLNAPEWMFARWCEVYGEEAARAMSAAHMTEPYLDLTVPADREAWAEKLGGEVQLGYS 181 Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262 +RL+ I L GF +G WWVQDA+A++P +L G + V DLCAAPGGKT QL + Sbjct: 182 VRLQP-DGPIEKLEGFDDGKWWVQDAAAAVPARLLGDIKGKVVADLCAAPGGKTMQLAAA 240 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI 322 GA VTA+D+S RRL++L NL R+ L AE D ++ P LFDA+L+DAPCS+TGTI Sbjct: 241 GADVTAVDISARRLQRLTQNLKRVGLEAE-TEISDLREFVPIDLFDAILLDAPCSATGTI 299 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 RRHPDV W + DD++K A Q +LL + + ++KPGG +V+ CSL++++ E +Q++L Sbjct: 300 RRHPDVAWLKREDDVLKLADLQYELLEKALGWLKPGGTLVYCTCSLEQEEGELQIQRLLL 359 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 P V+ VP+ + + A A++ +G R P S G+DGFFA LR Sbjct: 360 EHP-EVQRVPVTAEELGGV--AEAINSQGDFRAMPGQNLSSGKTSGGLDGFFAARLR 413 >gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. HGF5] gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp. HGF5] Length = 442 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 39/454 (8%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 ++L+ V ++ LL+ S L++ D L ++ T+ L +D LD + Sbjct: 1 MNVLTQVEQEGAYSNLLLNSALQKS---SLAKSDAGLATELIYGTISRLNTLDYFLDKFV 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + ++ LLR+S+ QI+YLD + D+AVV AV AKR + ++ + +VN +LR Sbjct: 58 NKGVRKLQPWVRALLRISLYQIVYLDRIPDHAVVSEAVNLAKR-RGHQGISGMVNGVLRN 116 Query: 131 V--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + E + QRI+ + P+W ER + YG E AI A P + + V Sbjct: 117 ILRQKETLAIPEDMTDAQRISLLHSHPQWLVERWISQYGTEAAEAICAANNEPPAVSVRV 176 Query: 183 ---KFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + + + L + + ++ + +G+ +QD S+ + Sbjct: 177 NTTMISRDDMLKLMGSHGLDASPSSVSPYGIVVKGAGNMALTDWYRDGMISIQDESSMLV 236 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + VLD CAAPGGK+A + + + A D+ + + + RL L + Sbjct: 237 AEAVQPEPGMRVLDCCAAPGGKSAHMGELMKDEGSIVANDIHAHKGKLISDQASRLGLDS 296 Query: 291 EDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 I+ DA D FD +L+DAPCS G IRR PD+ W + +DI + A Q +L Sbjct: 297 ISIVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRL 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + ++PGGI+V+S C+++ ++E V+ L A + + +L Sbjct: 357 LESVSTLLRPGGILVYSTCTIEPMENEGVISAFLEGHSEFAIAEDGLGALSRLGE--NSL 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 S G I+I P DGF+ L RR Sbjct: 415 SRGGGIQILPQHY--------HSDGFYIARLGRR 440 >gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia rettgeri DSM 1131] gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia rettgeri DSM 1131] Length = 427 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 219/457 (47%), Gaps = 45/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ SL+ +L R ++ +D+ L++ I LR+L Sbjct: 1 MKNTYNLRSIAATAIFQVLDNGQSLSTVLPDL-----QRNINDKDKALLQEICFGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ +L L+ V + Q+LY + +A + V+ A K+ + Sbjct: 56 PKLEWFISQLMEKPLTGKQRTLHYLIMVGIYQLLYTRIPPHAALAETVDGAVALKKPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR R++++L +RIA + P W +RL+ Y ++ I + P+ Sbjct: 115 KGLINGVLRSFQRQQVQLEERIANNTSQYLHPSWLLKRLQTAYPEDWQSIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ LPGF +G VQD S Sbjct: 175 WLRVNSQHHTAAQYLNLLEQSEITAHLHPSHPNAIRLDEPTAVSRLPGFEDGWSTVQDVS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A +L N S+LDLCAAPGGKT ++ + V A+D+ + RL++++ NL RL Sbjct: 235 AQGCAELLEPQNGESILDLCAAPGGKTTHILELAPRANVIAVDIDEYRLKRVKENLIRLK 294 Query: 288 LYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 +A I + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 QHAVVIQGDGTQPEKWAKDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQA 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L ++KPGG ++++ CS+ +++ + +Q L D ++ Sbjct: 355 QILEAIWPYLKPGGTLLYATCSIMPEENGKQIQNFLSKHN----------------DASL 398 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +++ P ++G DGFF L + + Sbjct: 399 NDGTDAGLQVLPS--------TNGGDGFFYARLVKKV 427 >gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-049-V-Sch6] gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-049-V-Sch6] Length = 452 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 104/461 (22%), Positives = 189/461 (40%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + RK +L LS D+ +V +R +DA Sbjct: 12 NIRLLAVKALSDINRKGAYANIVLQDYISKY---NLSDLDRRFFTELVYGVVRRRNYLDA 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + + + ++LR+ V QI+Y+D V + A V+ +V+ AK+ R + V Sbjct: 69 IIVHFAKRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 126 Query: 125 NSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N+ILR V RE+ ++ I+ I IP W + +G+++ + Sbjct: 127 NAILRSVIREQDSIGIEDLAANDIEAISFIYNIPLWLINLWISEFGRDKTEDLCAWFNEQ 186 Query: 176 LYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + + I + S+ F +G Sbjct: 187 PKLTARINTILIDIPQCLTMLNEQGWAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITF 246 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + +L +LD CAAPGGK+ + + + + + D+ + ++E + N Sbjct: 247 MDKASMLVARLVNPQPGERILDCCAAPGGKSMYMATLMNNVGSLMSCDIHEHKIELMNSN 306 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 DRL DA FD VLVDAPCS G +++ D+ W + + + Sbjct: 307 ADRLGASIVHTKVQDATKLPDSWNSYFDRVLVDAPCSGLGILQKKLDMRWRKQESILSEL 366 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L + VK G +++S C+L+ +++EEVV+ L+ ++P+ + Sbjct: 367 PSLQLAILERAAMTVKEKGYLIYSTCTLNYKENEEVVEAFLQKHK-EFSIIPVADDFPLK 425 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S G I P + MDGFF V ++R+ Sbjct: 426 -------SNSGMITTYP--------PTDDMDGFFMVKMQRI 451 >gi|49474771|ref|YP_032813.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse] gi|49240275|emb|CAF26748.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse] Length = 447 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 195/444 (43%), Positives = 271/444 (61%), Gaps = 9/444 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ K SL L D E+G + LS RD++L RAI+ LR + Sbjct: 7 PGLTVRQVCVRLLGAVLDKHTSLAGLTDNEHGHPQYLGLSHRDRLLCRAILGAALRHRGQ 66 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I A L L LP + +SLQ LL +SVAQILYLD+ D+A +DLAV AK D R F+ Sbjct: 67 ITAALSRFLTRPLPLQAFSLQHLLHISVAQILYLDIPDHAAIDLAVRVAKIDPRMRRFSG 126 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN +LR V+RE + L +++ I IP WF + L + YGKE+ I +DLTV Sbjct: 127 LVNVLLRNVAREAVFLCRKVPTIEEIPGWFGQLLVSTYGKEKADQILAIQSLEPPLDLTV 186 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L ++LP G +RL L S+ LPG+A+G WW+QD +A++P L G + Sbjct: 187 KSDSVGWAERLGGIILPNGSVRLSRLNCSVSELPGYADGDWWIQDFAAALPACLLGNIYG 246 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V+DLCA+PGGKTAQL + GA VTA+D+S RL++L+ N+ RLH E D ++ Sbjct: 247 KQVVDLCASPGGKTAQLALQGADVTAVDLSAHRLKRLKENMKRLHFS-VRYHEGDVKNFH 305 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 PK+LFDA L+DAPCSSTGTIRRHPD+LWT+ D++K A Q LL+ I+ VK GG +V Sbjct: 306 PKRLFDAALLDAPCSSTGTIRRHPDILWTKSMHDVIKLAALQYDLLVAAIALVKKGGRIV 365 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 FSNCSL +++ E++++K+L + V L P+ + + +A LS +G +R TP Sbjct: 366 FSNCSLAREEGEDLIEKILSTC-NDVVLEPICAE--EMGALAHLLSAKGILRTTPADFCH 422 Query: 423 IDGVSS-----GMDGFFAVALRRL 441 + + GMDGFF R++ Sbjct: 423 ENFDAEKKMFLGMDGFFTARFRKV 446 >gi|115522058|ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53] gi|115516005|gb|ABJ03989.1| sun protein [Rhodopseudomonas palustris BisA53] Length = 449 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 170/439 (38%), Positives = 245/439 (55%), Gaps = 5/439 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR +++ +L V+ KR L LD + LS RD+ L+R +V LR L Sbjct: 13 PGLAARRIAADILDGVLHKRRMLDDQLDGPAAHPGLKTLSDRDRALMRRLVATILRKLGT 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + VL +L +P Q L + AQIL+++V D+A VDL+V + D+ +A Sbjct: 73 LGHVLSRLLDRGVPTDAPRAQSALLIGAAQILWMEVPDHAAVDLSVRLVQSDRRAAKYAG 132 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE L+ + G +P W R YG+E I+ A +DLT Sbjct: 133 LVNAVLRRCAREGQPLIAEVQGQPIDLPPWLFARWSAHYGEETARKIALALGEEPSLDLT 192 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK DIE WA +L+ +LPTG +R L S+ L G+ +G WWVQDA+A++P +LFG L Sbjct: 193 VKSDIEAWAARLHGEILPTGTLR-TALQGSVKMLHGYEDGQWWVQDAAAALPARLFGALQ 251 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +LDLCAAPGGKTAQL + GA VTA+D S R+ +L+ NL RL L E ++ Sbjct: 252 GQRILDLCAAPGGKTAQLALGGANVTAIDRSPNRVARLKENLARLSLKVETVVADATEWD 311 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD VLVDAPCSSTGTIRRHPD+ W + DI Q +LL + S +KPGG + Sbjct: 312 GGDTRFDGVLVDAPCSSTGTIRRHPDIAWLKQEADIATLGALQARLLQKASSLLKPGGTL 371 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E L ++ + +P+ A + +A ++ +G +R P L Sbjct: 372 VYCTCSLEPEEGE-QAIAALLAADATLRRLPIEPA--EVAGLAEIVTADGDLRTLPCHLP 428 Query: 422 KIDGVSSGMDGFFAVALRR 440 D +G+DGF+A L + Sbjct: 429 HPDAKLAGLDGFYAARLVK 447 >gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4] gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4] Length = 444 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ + + ++D L+ +V T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKN---TIDRKDIGLLTEMVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q+LYLD V + A + AVE AKR + ++ + Sbjct: 59 DYYLQPFLRKKVE---AWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGISG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE ++R+A + P W + + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSLEEIENPVERLAIATSHPMWLVQEWASEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKVTVEEAVALLADEGIEAKRGELSEDAIQIERGNVAHTEAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +VLD CAAPGGKT + KV +LD+ ++ + Sbjct: 235 ESSMLVARALEPNKGDTVLDSCAAPGGKTTHIAERLDGTGKVMSLDLHAHKVRLIEQQAK 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLGLENVETMALDARKVQEHFANESFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P + + + Sbjct: 355 TIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIKQFLQEHPEFEWDTTIKDRMPEKL 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG +RI P DGF+ LR+ + Sbjct: 415 N---PYIDEGQVRILPHYFA--------TDGFYIACLRKKV 444 >gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98] Length = 444 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLMQVEKSGAYSNLLLNHLIEKSTIH---KKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q+LYLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLRK---KVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSREKIE-------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A P W + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSLDELKDPVERLAIAMSHPTWLVQEWVAAYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAIDLLNQEGVEAKRGDLSDDAIQIEKGNVAHTEAFQKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +LD CAAPGGKT + KV +LD+ ++ ++ + Sbjct: 235 ESSMLVARAVEPSKGDMILDSCAAPGGKTTHMAERLRGTGKVMSLDLHDHKVRLIKQQAN 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ ++ D + + Sbjct: 295 RLGLENVETKALDARKVQEHFQNESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+ +L + +K GG +V+S C+++K ++E+VV L+ P E + + Sbjct: 355 TIQQTILDKVAPLLKTGGRLVYSTCTIEKIENEQVVANFLQKHP---EFEWDTTMQERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +G ++I P DGF+ LR+ + Sbjct: 412 EKLRPYINKGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis str. A2012] Length = 444 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 200/461 (43%), Gaps = 40/461 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ L V + LL+ S + ++D L+ IV T++ + Sbjct: 2 RQNVRELALDGLIQVEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A Sbjct: 59 DYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAG 114 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + YG E + + + P Sbjct: 115 MVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPVWLVQEWTAEYGLETAEKMCEVNMLP 174 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 175 PVPTARVNVDKITVEEAITLLASEGIEAKRGDLSDDAIQIXKGNVAHTDAFKKGFLSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + +LD CAAPGGKT + +V +LD+ ++ ++ + Sbjct: 235 ESSMLVARALEPDEGDVILDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAE 294 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 295 RLXLENVETKALDARKVQEHFANEXFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 355 MIQFAILEKXAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 412 EKLSPYMDEGQVQILPHYFA--------TDGFYIACLRKKV 444 >gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae NTUH-K2044] gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 431 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKNINLRSLAAQAIEQVVEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVEANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W LN L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 VKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428 >gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus subtilis subsp. spizizenii str. W23] gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus subtilis subsp. spizizenii str. W23] Length = 447 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 130/463 (28%), Positives = 211/463 (45%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R ++ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKKN-SVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQDRALLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S+ Q+ YL+ + D A + AVE AK + ++ Sbjct: 57 IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN +LR + RE + ++R+A + PEW + + YG + I Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWTDAYGFDAAEKICRIH 174 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224 + P L V D ++ A + L E L SI F G Sbjct: 175 LIPPRQTLRVNQMKADRADLLDQMAAEGIEVENGDLAEDAVKLLKGSIAGTHFFQNGEVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + +VLD CAAPGGK+A + + + VT+LD+ K +++ ++ Sbjct: 235 IQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTSLDLHKHKVKLIKE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DRL L D MDA FD +LVDAPCS G IRR PD+ +T+ DD Sbjct: 295 AADRLGLTIIDAKTMDARKAGETFENGQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDST 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +L + VK GG +V+S C++D+ ++EEV+ ++ P P S Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENEEVIHAFIQEHPDF---EPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A +G ++I P G DGFF ++R+ Sbjct: 412 RLPEKARPFVRDGRVQILPHYF--------GTDGFFICSMRKK 446 >gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88] gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88] Length = 454 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 113/455 (24%), Positives = 200/455 (43%), Gaps = 41/455 (9%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R V+ +L V K L+ L+++D+ + +V T+++ ID +L Sbjct: 17 RKVAIEVLDAVFLKNAYSNIALNNALNKYK---LNEKDKAFITELVYGTIKYRHTIDTIL 73 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + + +LR+ + Q+ YLD V +A V+ VE K +++ KL+N Sbjct: 74 NSYIKKGIKSVDKYVLNILRIGIYQLRYLDKVPSFAAVNECVELGK--VKSKGTGKLING 131 Query: 127 ILRRVSREKIELLQRIA-------GISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +LR R K + P+W + YG+E++ I S I Sbjct: 132 VLRNYIRNKDPKYYDESNLVEKLSFEYSYPKWMIDLFLKQYGREKIEEILKGLNSIPSIT 191 Query: 180 LTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + V + N L +I P F EG+ VQD SA Sbjct: 192 VRVNNIKSDYESVWNSLEDNNYNIEEGLVCPEAIRIIKGRAIEKNPLFKEGLITVQDESA 251 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + +N++V+DLC+APGGKT + + + KV A D+ + +L+ ++ N +RL Sbjct: 252 MLVAGAMDLEDNMNVMDLCSAPGGKTTHISEIMNNTGKVLAFDIHENKLDLIKQNKERLG 311 Query: 288 LYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + D+I D Y K + +L+DAPCS G IR+ P++ +T+ D+ QR Sbjct: 312 VKNIDLILGDGTLYNKKYSEFANRILIDAPCSGLGIIRKKPEIKYTKSAKDLKSIVHIQR 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L G ++K GI+++S C+L+K+++ E V+ L+ P + + ++D Sbjct: 372 KILENGAKYLKKNGILLYSTCTLNKKENIENVKWFLKEFPNF----KIEKIFLGNLD-NF 426 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G + I P+ MDGF+ ++ Sbjct: 427 IYDEYGTLTILPNEY---------MDGFYIAKFKK 452 >gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591] gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591] Length = 431 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 130/459 (28%), Positives = 219/459 (47%), Gaps = 44/459 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ +L V+ + SL+ LL + D +S++D+ L++ I LR L Sbjct: 1 MKSTYNLRSIAATVLVQVVEQGQSLSQLLPVFQRD-----ISEKDRGLLQEICFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P++D L ++ L K+ L LL V + Q+++ + +A + V A K + Sbjct: 56 PQLDWYLRQLMAKPLTGKQKVLHYLLMVGIYQLIHTRIPPHAALAETVNAAVTLKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ EL QR+ P+W +RL+ Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQEELQQRLQNNTARYSHPDWLLQRLKKAYPDQWEQIIDANNQHPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + + E + L + P ++ LPGF +G VQDAS Sbjct: 175 WLRVNRLHHSREAYLVLLQEKGIEAHPHPFYTDAIRLITPCAVSGLPGFDQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N+ +LDLCAAPGGKT ++ A+V A+DV ++RL++++ NL RL Sbjct: 235 AQGCIHWLSPKNHEDILDLCAAPGGKTTHILEAAPQARVLAVDVDEQRLKRVKENLQRLR 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A D+ D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHA-DVKCGDGRTPEAWCADQCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + +L +K GG +V++ CS+ +++ + + L+ P + Sbjct: 354 QAILEAIWPRLKNGGTLVYATCSVLPEENSQQIAAFLQHHPDAIL-------------AD 400 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + I++ P + DGFF L + Q Sbjct: 401 TGNTTSPGIQVLP--------MPEDGDGFFYAKLVKSGQ 431 >gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|224493256|sp|A6TEU2|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 431 Score = 276 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKNINLRSLAAQAIEQVVEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPEQWQEIVEANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W LN L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 VKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428 >gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 431 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKNINLRSLAAQAIEQVIEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPEQWQEIVEANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W LN L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLNEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 VKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNATWAHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428 >gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275] gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275] Length = 441 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 108/460 (23%), Positives = 205/460 (44%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + +L + ++ ++ + + +S +D+ L +V + +D Sbjct: 1 MNAREAAFKILCDIEIEKNYSNMAINKIFKNEK---ISDKDKGLATELVYGVIENRKYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + ++ +LR+ QIL+LD + D+A V+ V+ A + Sbjct: 58 FIINKLSKIKVKKMSSFVKIILRMGTYQILFLDKIEDHAAVNETVKLASKYDG--KSKGF 115 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 VN+ILR R+K + A +W E +G E + +A Sbjct: 116 VNAILRNEIRQKRTIKYIDIEDPIRRLAVKYSYQQWIVEDWVKNFGIEFAEELLEALNER 175 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQ 226 + + D + + + L E + I S + EG++ VQ Sbjct: 176 PDLYVRTNTLKIDRNSLLKEFEKEGIKASKAMLPEEAIMVENFKGIESSRLYKEGLFTVQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + ++ VLD+C+APGGK+ + + + K+ + DV + +++ ++ Sbjct: 236 DISSMLVAKVVAPKEGDMVLDMCSAPGGKSTHMAELMKNTGKIVSRDVFEHKIKVIKAAA 295 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + + E DA + + FD VL D PCS G IRR P++ + ++V Sbjct: 296 KRLGITNIEAEEFDAANLDENSIEKFDCVLTDVPCSGLGIIRRKPEIKYKAKE-ELVDLP 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q K+L +VK G +V+S C++ ++ EVV+K L+ +P ELVP+ + I Sbjct: 355 KIQSKILENASKYVKINGTLVYSTCTVQDCENIEVVEKFLKENPN-YELVPI-----EGI 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ +G+I+I P++ GMDGFF ++R+ Sbjct: 409 NVDPEEQEKGYIKIYPNV--------HGMDGFFIAKMKRV 440 >gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sputigena ATCC 35185] gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185] gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sputigena ATCC 35185] gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185] Length = 443 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 111/459 (24%), Positives = 191/459 (41%), Gaps = 43/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V K L + LS+ D+ + + +D Sbjct: 3 KARETALKALHEVNEKGAYANVALARSLRAAK---LSEVDRRFATELAYGAAKAGGTLDW 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 +L L L + ++ +LR+ + Q+ +L V A + AVE KR + K V Sbjct: 60 ILRRYLNRPLSKIPPMVRDILRLGIYQLFFLARVPASAACNTAVEMTKRC-SHAGTVKFV 118 Query: 125 NSILRRVSREKIELLQRIAGIS---------IIPEWFKERLENFYGKERVLAISDACISP 175 N++LR +RE + PEW R +G E A+ + + Sbjct: 119 NAVLRTAAREPEKAAFPTGKAHEAENLALSLQHPEWLVRRWIEQFGYEEARALCEFDNAQ 178 Query: 176 LYIDLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + L + +L+ + T L S+ +L +G++ VQ Sbjct: 179 ATLSLRTNTLKITRDKLLERLSKEGVEAEPSAWTPEGILFLRHGSLDALESLQQGLFQVQ 238 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + + VLD+C+APGGKT + + ++ ALDV + ++ ++ N Sbjct: 239 DESSMLVAHVLAPEPGEFVLDVCSAPGGKTTHIAASMGDCGRIVALDVHEHKMRRIAENC 298 Query: 284 DRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL + + + + +DA + + D VLVDAPCS G +RR PD W + DD+ A Sbjct: 299 ERLGIKSVEPLLLDAREAGRRFPRQADRVLVDAPCSGLGVLRRKPDARWRKRPDDLAALA 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L VK GG++V+S C+++++++E VV+ L S Sbjct: 359 RLQREILSSAAEAVKSGGVLVYSTCTIEREENEAVVEDFLARHEEF-------SLENAGE 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + PE +++ P G DGFF +RR Sbjct: 412 LLPLKKRPEQMLQLYPQ--------RDGTDGFFIARMRR 442 >gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 446 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 113/459 (24%), Positives = 198/459 (43%), Gaps = 41/459 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR ++ +L + R LD S+ L D+ L IV +R +DA Sbjct: 3 NARQLALLILRDIDRSSAYPDRALDRHLSASSLNCL---DKALTTEIVYGIVRRQRTLDA 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 +LD + + ++ L+++L + + Q+ YL + A V+ AVE K + A +V Sbjct: 60 LLDRLGKKTAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGK-LAAVV 118 Query: 125 NSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACIS 174 N +LR+ R + + P+W + + +G + Sbjct: 119 NGMLRQYLRLTANGDDPLILPENTASRLGILHSFPDWLVQLWLDRFGVTETEQLCQWFNR 178 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWV 225 +D+ + E ++L + + RL +I L GF G + + Sbjct: 179 SPDLDIRINPLKTSREALENELESANITFNHLKLPLACRLTSGLGNIERLEGFRAGNYTL 238 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD SA + L +++D CAAPGGKT + + ++ A D + RL +L N Sbjct: 239 QDISAQLVTHLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTPSRLRQLEAN 298 Query: 283 LDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + RL L A +I D+ D + D VL+DAPCS GT+ + PD+ W + +++ A Sbjct: 299 IKRLDLKAIEIHLGDSRDRPQWCGIADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLA 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL ++VKP GI+V++ C+L+ ++E V+++ L + P P +++ Sbjct: 359 KRQGELLASAATWVKPKGILVYATCTLNPLENERVIEQFLAAHPDWKMAPPDSNSC---- 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G I + P DGFF L + Sbjct: 415 -FSEYYTETGAIEVLPH--------RHNQDGFFMAKLVK 444 >gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS 92-3] gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS 92-3] Length = 431 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKNINLRSLAAQAIEQVVEKGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLISKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLAEFAEHENRYLHPKWLLKRLQQAWPEQWQEIVEANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W LN L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLNETGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNAIWGHLKPGGTLVYATCSILPEENSQQIAAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGVEEGDGFFYAKLIK 428 >gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3] gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3] Length = 426 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 125/448 (27%), Positives = 206/448 (45%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ ++ V+ K ISL+ L + S +D+ L+ + +R LP++D Sbjct: 1 MNLRALAAKVVFQVLEKGISLSVALPDQQRHLE----SGKDKALMAELCYGVMRHLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + L K+ L QLL V Q+ + + +A + E A R + K+V Sbjct: 57 KLVSDCMSKPLKGKQRILHQLLLVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ L ++ P W +RL+ Y + + + P Sbjct: 116 NGVLRNIQRQEKPLPTDNETLALNTPAWIIKRLKAAYPESWKEIVEQSHQRPPMWLRSNK 175 Query: 182 VKFDIETWAHKLNAVMLP-----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + + L V + + L E P+ ++ LPGF EG VQD +A L Sbjct: 176 LSQTRDEYLASLAEVEIQASAGKSSDAILLESPKDVLQLPGFEEGTASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 ++ VLD CAAPGGKT ++ A+D RLE+++ NLDRL L A Sbjct: 236 LAPIDGELVLDACAAPGGKTCHLLEQAPNIELVAVDFDANRLERVQQNLDRLSLNAKLIH 295 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q K+L Sbjct: 296 GDAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELASLQSKILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++E+ ++ L + LVP++ + Sbjct: 356 QWLKPGGTLLYATCSILPQENEQQIRAFLERA-NDATLVPIDEQNHP---------DDIG 405 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP + MDGF+ L + Sbjct: 406 WQITPGL--------ENMDGFYYARLVK 425 >gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium DSM 319] gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium DSM 319] Length = 446 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 116/464 (25%), Positives = 206/464 (44%), Gaps = 40/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R ++ +L + + + LL+ R + +D L+ IV T++ Sbjct: 1 MSK-YNVRDIALDILLAIEKNQAFSNLLLNNSIQK---RGIQGKDAGLLTEIVYGTIQRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + + ++ LLR+S+ Q++YLD V D A++ AVE AK+ + ++ Sbjct: 57 DTLDYGLAPFLKNP-KKLQPWVRVLLRLSLYQMVYLDRVPDRAILHEAVEIAKK-RGHKG 114 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A +VN +LR + R E ++R+A + P W +R YG ++ I A Sbjct: 115 IASMVNGVLRNIQRSGTPSLEEIQNPVERLAIETSHPLWLVKRWVEQYGLDKTRGICLAN 174 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWW 224 + + V L + L+ + F EG++ Sbjct: 175 LMAPKQTIRVNSARFTQNEVKEALEKEGIVVEPGHFVEEALEVQKGNAAHTQAFREGMFT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 VQD S+ + G +LD CAAPGGK+ + + KV +LD+ +++ + Sbjct: 235 VQDESSMLVAHALGAEAEELILDSCAAPGGKSTHIAEQLRNSGKVISLDIHDHKVKLIAQ 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +RLHL + D+ K++FD +LVDAPCS G +RR PD+ +T+ DI Sbjct: 295 QAERLHLTNIEPTVQDSRKAGEQFDKEMFDRILVDAPCSGFGVMRRKPDLKYTKTEQDIK 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q+ +L +K GG +V+S C++D+ ++ +VV L + L + Sbjct: 355 QLARIQQDILNAVAPLLKKGGTLVYSTCTIDRDENGDVVAAFLADHADFQKDETLAARMP 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + G I++ PD DGF+ L++ + Sbjct: 415 QKLKQNV---KHGEIQLLPDAQ---------SDGFYIACLQKKV 446 >gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] Length = 425 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 121/447 (27%), Positives = 205/447 (45%), Gaps = 34/447 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K ISL+ L + S +D+ L+ + +R LP++D Sbjct: 1 MNLRALAAKVAFQVLEKGISLSVALPDQQKHLE----SGKDKALLAELSYGVMRHLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KLVSDCMSKPLKGKQRIVHQLLLIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ L ++ P W +RL+ Y + I + P + Sbjct: 116 NGVLRNIQRQEKPLPTDNDTLAFNTPSWIVKRLKAAYPENWQEVIEQSHQRPPMWLRNNK 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L E P + LPGF +G VQD +A L Sbjct: 176 RSQTRDEYLAALAEIDIPASAGKSSDAILLESPRDVAQLPGFDQGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293 + VLD CAAPGGKT L+ + ++ A+D ++RLE+++ NLDRL L A Sbjct: 236 LAPKDGELVLDACAAPGGKTCHLLELANIQLVAVDFDEKRLERVQQNLDRLSLDAKLVHG 295 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q K+L Sbjct: 296 DAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQSDIDELAALQSKILDHCWQ 355 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++KPGG ++++ CS+ Q++E+ ++ L + L+P++ D+ ++ Sbjct: 356 WLKPGGTLLYATCSILPQENEQQIRSFLERA-DDATLIPISE-QPHPDDIGWQIT----- 408 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 + MDGF+ L + Sbjct: 409 -----------PGTENMDGFYYARLVK 424 >gi|17986519|ref|NP_539153.1| 16S rRNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|17982123|gb|AAL51417.1| 16S rRNA m(5)c 967 methyltransferase [Brucella melitensis bv. 1 str. 16M] Length = 424 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 184/429 (42%), Positives = 250/429 (58%), Gaps = 10/429 (2%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 ++ K SL L D +G + L RD+ LVRAI+ L I+ ++ L LP Sbjct: 1 MIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALHNRGSIERAINKRLDRPLPE 60 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR-VSREKI 136 +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A LVN++LRR ++ Sbjct: 61 NAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKER 120 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 L + +PEWF + + + YG E+ I ID TVK D + WA KL V Sbjct: 121 ALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDFTVKGDAKAWAEKLGGV 180 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 LP G +RL+ + ++ LPGFAEG WWVQD +AS+P +L + V DLCAAPGGKT Sbjct: 181 ALPNGSVRLQTVESNLTDLPGFAEGEWWVQDVAASLPARLMDDIKGKRVADLCAAPGGKT 240 Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 AQL++ GA VTALD+S+ RL++L NL+RL A+ + + D+ P +LFDAVL+DAPC Sbjct: 241 AQLVLQGADVTALDLSENRLKRLNANLERLGFEAKTV-ATNLMDFKPDELFDAVLLDAPC 299 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 SSTGT+RRHPDV WT+ DI K A Q KLL + VKPGG++VFSNCSL + EE+ Sbjct: 300 SSTGTVRRHPDVPWTKTPQDIAKLAELQGKLLAHAATLVKPGGVIVFSNCSLHPLEGEEM 359 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE----KIDGVSSGMDG 432 +K P L P + ++ EG++R TP L + +GMDG Sbjct: 360 ARKA----PENPLLEPFPITEQDCPGLEGLVTAEGFLRSTPADLPPDRLDGNPHMAGMDG 415 Query: 433 FFAVALRRL 441 FFA +R+ Sbjct: 416 FFAARFKRV 424 >gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio coralliilyticus ATCC BAA-450] gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio coralliilyticus ATCC BAA-450] Length = 426 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 121/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RDQ L++ I +LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGQSLSNALP-----AAQQQVKPRDQALLQEICYGSLRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 SIANELMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKTLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R + + AG P W + L++ Y ++ I +P+++ Sbjct: 115 NAVLRNYQRNQEELDAHAMSHNAGKYGHPSWLLKLLQDAYPQQWQDIIEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P + LPGF +G VQDA+A + Sbjct: 175 VNQQHHSRDEYQQLLKNENIDSSIHSEASDALKLAAPCDVTKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA A++ A+D RL+++ NL RL L A Sbjct: 235 SINYLTPKDGELILDCCAAPGGKTAHILERTQDAQIVAIDCDDSRLKRVHDNLQRLQLKA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D+ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++L Sbjct: 295 QVICGDARKPKDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRGDDIAALAKLQSEIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ E V+ L + + + Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENSEQVKAFLARTANA--------------QLEGSPV 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P MDGF+ L ++ Sbjct: 401 DNPGRQVLPG--------EEDMDGFYYAILTKIA 426 >gi|260466787|ref|ZP_05812972.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075] gi|259029399|gb|EEW30690.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075] Length = 475 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 197/426 (46%), Positives = 263/426 (61%), Gaps = 5/426 (1%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ R L L D E G ++ L RD+ LVRAI+ LR+ I +L L LP Sbjct: 54 VIDARTPLDGLTDHENGHPQYKALDPRDRGLVRAILVTALRYRMTITGLLARRLEKPLPP 113 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L V+ AQIL+LD+ D A VDLAV AK D + F+ LVN +LR ++R K Sbjct: 114 NASALSHILHVAAAQILFLDIPDSAAVDLAVTHAKSDPRTQRFSGLVNGVLRTLARAKDT 173 Query: 138 L-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 +A P+WF +RL+ YG ++ I A +D TVK D E WA KL + Sbjct: 174 ELPAALAATDEAPKWFSDRLKAAYGADKAKQILAAHRHEAPVDFTVKADPELWAEKLGGI 233 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 +LPTG +R++ L ++ LPGFAEG WWVQDA+AS P +LFG + L V DLCAAPGGKT Sbjct: 234 VLPTGTVRVENLAGPVIELPGFAEGAWWVQDAAASFPARLFGDVRGLRVADLCAAPGGKT 293 Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 AQLI++GA+VTA+D SK RL +L NLDRL L A DI++ D Y P +LFDAVL+DAPC Sbjct: 294 AQLILAGARVTAVDTSKNRLARLAQNLDRLGL-AADIVQADLIKYEPAELFDAVLLDAPC 352 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 SSTGT+RRHPDV WT+ D+ K A Q +LL + ++ V+PGG +VFSNCSLD + E + Sbjct: 353 SSTGTVRRHPDVPWTKTAADVEKLADLQGRLLARAVTLVRPGGRIVFSNCSLDPIEGENL 412 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + L+++P V PL+ ID L+ +G +R TP L+ SG+DGFFA Sbjct: 413 HRAFLKATPT-VADDPLHQGEIAGID--SFLTAQGTLRTTPADLDLGAPERSGLDGFFAA 469 Query: 437 ALRRLI 442 +RR + Sbjct: 470 RMRRAV 475 >gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008] gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008] Length = 451 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 103/461 (22%), Positives = 185/461 (40%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + R L LS D+ +V +R +DA Sbjct: 11 NIRLLAVKALSEINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ F + + + ++LR+ + QI+Y+D V + A V+ +V+ AK+ R + V Sbjct: 68 IIVFFAKRPIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR V RE + I+ I P W GK++ + + Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNFWIKEMGKDKTVDLCAWFNEQ 185 Query: 176 LYID---LTVKFDIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225 + TVK IE +L + + + +G Sbjct: 186 PRLTSRINTVKVSIEDCLKELEDLDWIVEQDTYIPEVVYIDGHQGHLEKAKPVLDGHITF 245 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + + +LD CAAPGGK+ + + + + + D+ +LE + N Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLELINQN 305 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + D K+ FD VLVDAPCS G +++ D+ W + +++ Sbjct: 306 AERLGVSIISTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIEL 365 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VK G +V+S C+++ ++E V+ K L + ++ +K Sbjct: 366 PPLQLEILEKASKMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHKNFI----IDPVSYKG 421 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A+ +G I P MDGFF ++RL Sbjct: 422 APQAI----DGMITTYP--------PRDHMDGFFMARMKRL 450 >gi|288957078|ref|YP_003447419.1| Sun protein [Azospirillum sp. B510] gi|288909386|dbj|BAI70875.1| Sun protein [Azospirillum sp. B510] Length = 431 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 172/443 (38%), Positives = 249/443 (56%), Gaps = 18/443 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + + AR V+ LL V+RK + D L RD+ VR +V LR Sbjct: 1 MTDTSLAARGVALDLLRDVLRKSVPFDDAFD---AHPELASLQPRDRGFVRLLVATVLRR 57 Query: 60 LPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 L +ID ++ L LP+ ++ +LR+ AQ+++L+ +A VD AVE A Sbjct: 58 LGQIDEMIQASLAKPGLPK--AAIHDMLRLGTAQLVFLNTPAHAAVDTAVELAAARNA-A 114 Query: 119 HFAKLVNSILRRVSREKIELL-QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + L+N++LRR+ RE E+ ++ AG P+W + YG R I +A + Sbjct: 115 PYKGLINAVLRRIGREGAEMAARQDAGRLNTPDWLWLSWRSAYGTARTRGIVEAHLHEAP 174 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 +D+TVK D WA +L A +LPTG +R S++ LPGF +G WWVQD +AS+P +LF Sbjct: 175 LDITVKSDPAGWAERLGASLLPTGSLRRPPG-GSVIELPGFEDGEWWVQDLAASLPAKLF 233 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 G L V DLCAAPGGKTAQL+V GA+VTA+D S RRLE++ NL RL L AE ++ D Sbjct: 234 GDLAGKRVFDLCAAPGGKTAQLVVQGAQVTAIDRSARRLERVTENLKRLRLEAE-VLAAD 292 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A + P+ DAVL+DAPCS+TG IRRHPD+L + DDI K A Q +LL + + V+P Sbjct: 293 AATWEPEAPADAVLLDAPCSATGAIRRHPDILRVKTPDDIAKLARAQSRLLARSVELVRP 352 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +++ CS+ ++ E V ++L VE P+ + ++ ++ G +R P Sbjct: 353 GGTLIYCTCSIQPEEGEAQVARLLEQ-DGRVERWPVTADELGG--LSEPINEAGEVRSLP 409 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 ML + G+DGFF LRR Sbjct: 410 GMLADL----GGIDGFFVARLRR 428 >gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium QM B1551] gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus megaterium QM B1551] Length = 446 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 114/464 (24%), Positives = 205/464 (44%), Gaps = 40/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R ++ +L + + + LL+ R + +D L+ IV T++ Sbjct: 1 MSK-YNVRDIALDILLAIEKNQAFSNLLLNNSIQK---RGIQGKDAGLLTEIVYGTIQRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + + ++ LLR+S+ Q++YLD V D A++ AVE AK+ + ++ Sbjct: 57 DTLDYGLAPFLKNP-KKLQPWVRVLLRLSLYQMVYLDRVPDRAILHEAVEIAKK-RGHKG 114 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A +VN +LR + R E ++R+A + P W +R YG ++ I A Sbjct: 115 IASMVNGVLRNIQRSGTPSLEEIQNPVERLAIETSHPLWLVKRWVEQYGLDKTRGICLAN 174 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWW 224 + + V L + L+ + F EG++ Sbjct: 175 LMAPKQTIRVNSARFTQNEVKEALEKEGIVVEPGHFVEEALEVQKGNAAHTQAFREGMFT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 VQD S+ + +LD CAAPGGK+ + + KV +LD+ +++ + Sbjct: 235 VQDESSMLVAHALSAEAEELILDSCAAPGGKSTHIAEQLKNSGKVISLDIHDHKVKLIAQ 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +RLHL + D+ K++FD +LVDAPCS G +RR PD+ +T+ D+ Sbjct: 295 QAERLHLTNIEPTVQDSRKAGEQFDKEMFDRILVDAPCSGFGVMRRKPDLKYTKTEQDVK 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q+ +L +K GG +V+S C++D+ ++ +VV L + L + Sbjct: 355 QLARIQQDILNAVAPLLKKGGTLVYSTCTIDRDENGDVVAAFLTDHADFQKDETLVARMP 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + G I++ PD DGF+ L++ + Sbjct: 415 QKLKQNV---KHGEIQLLPDAQ---------SDGFYIACLQKKV 446 >gi|296447350|ref|ZP_06889277.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b] gi|296255129|gb|EFH02229.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b] Length = 467 Score = 274 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 162/438 (36%), Positives = 241/438 (55%), Gaps = 6/438 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR+ ++H+++ V++ L + L RD L R+I + +R L Sbjct: 34 PGLAARIAAAHVIADVVQGGRRLDERFSPQAVPQRVAGLDARDAALARSIASAAIRRLGT 93 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L ++ LP++ L+ + V+ AQI +LD D+A VDLAV A+ + + FA Sbjct: 94 IRHALAALMDKGLPKQGARLEWPMIVAAAQIFFLDTPDHAAVDLAVRAARLEPKTAPFAG 153 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN +LR + R + E L P W +R YG+ + A + A + +D+TV Sbjct: 154 LVNGVLRNLVRRREEFLDCDPLELDTPSWLAQRWTKTYGEAQARAFARAHMLEPPLDVTV 213 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K + E WA +L+ V++PTG +RL+ L E I L G+ EG WWVQDA+A++P +L + Sbjct: 214 KSEPERWAERLDGVVMPTGSVRLRTL-EPIAGLEGYEEGEWWVQDAAAALPARLLRAEPD 272 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 +LD+CAAPGGKTAQL + A VTALD S RL+ L NL R L+A DI DA + Sbjct: 273 ERILDMCAAPGGKTAQLAQARALVTALDRSAERLKLLAANLQRARLHA-DIAVGDATSF- 330 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FDA+LVDAPCS+TGTIRRHPDV W + D+ A Q K+L + + ++PGG +V Sbjct: 331 QARPFDAILVDAPCSATGTIRRHPDVAWIKKPGDLDALASLQSKMLDRAAALLRPGGRMV 390 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL+ ++ E V LR P + +P+++ ++ EG +R P Sbjct: 391 YCTCSLEPEEGEAQVAAFLRRQP-DMRRIPIDAEGEGIPH--EFVTAEGDLRSLPSHWPA 447 Query: 423 IDGVSSGMDGFFAVALRR 440 + G+DGFFA R Sbjct: 448 EEPRLRGVDGFFAARFSR 465 >gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 429 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ L+ A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLINEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|298292785|ref|YP_003694724.1| sun protein [Starkeya novella DSM 506] gi|296929296|gb|ADH90105.1| sun protein [Starkeya novella DSM 506] Length = 446 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 169/422 (40%), Positives = 232/422 (54%), Gaps = 14/422 (3%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 + K L L+ + L +RD+ L R I LR + A++ +L LP K Sbjct: 37 LEKGRPLEEALERLTRE-----LDERDRGLARMIAATALRKFGTLRALIGSLLERGLPEK 91 Query: 79 KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 ++ LL AQIL++DV D+A VD +V A + F LVN++LRRV+RE + Sbjct: 92 AGRVETLLVTGAAQILFMDVPDHAAVDTSVALAAESPASAGFKGLVNAVLRRVAREGKAM 151 Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198 L +A P+W + YG + LAI+ A S +DLT K D WA KL +L Sbjct: 152 LPDVADQ---PQWMVDGWTAAYGGKDALAIAHALASEAPLDLTAKDDAAGWAEKLGGKLL 208 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 TG IRL E ++ +LPGF EG WWVQDA+A++P +L ++ DLCAAPGGKTAQ Sbjct: 209 STGSIRLVEA-GNVTALPGFEEGAWWVQDAAAALPARLLHAKAGETIADLCAAPGGKTAQ 267 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 L +GA VTALD S +RL++L+ NL RL L AE + FD VL+DAPCS+ Sbjct: 268 LAATGAAVTALDRSGQRLKRLKQNLARLGLDAEIVEA--DAAAWKGGPFDGVLIDAPCSA 325 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 TGTIRRHPDV WT+ DI Q ++L VKPGG++V+S CSL+ ++ E+ V+ Sbjct: 326 TGTIRRHPDVAWTKAPADIASLGALQARILANAADLVKPGGVLVYSTCSLEPEEGEKQVE 385 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + P V A + A ++ G +R P L D +G+DGFFA L Sbjct: 386 ALLAARPDFVRD---PVAPGECGVAAEWINAAGELRTLPTHLPDADPRFAGIDGFFAARL 442 Query: 439 RR 440 RR Sbjct: 443 RR 444 >gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379] gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379] Length = 452 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 127/462 (27%), Positives = 197/462 (42%), Gaps = 41/462 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 N R + +L + R+ L+D E L+ D+ L +V LR Sbjct: 7 KRSNPRQSACSVLLRIQREGCYADQLMDRELESG---GLTGPDRGLFAELVFGALRRQGT 63 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D +L +L L R + LLRV + Q++YLD + + A V+ +V AK+ + Sbjct: 64 LDHILSSLLTQPLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESVNLAKKTL--PRAS 121 Query: 122 KLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDAC 172 LVN++LR R ++ A P W + + G E A+++A Sbjct: 122 GLVNAVLRNYLRRGDDIPFPDPLAMPAESIAARHSHPLWLVRQWIDQLGVEEAEALAEAS 181 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVW 223 + L + K + + R L E I SLPGF EG++ Sbjct: 182 SRQAPLALRANTLAISRDDLLVKFSTNGIQATPCRFSPHGILVEGRHQITSLPGFHEGLF 241 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD ++ + L +LD CAAPGGK L + ++ A+DVS +L ++ Sbjct: 242 AVQDEASQMAGLLLDPRPGERILDACAAPGGKATHLAQLMNDRGELLAMDVSGVKLPLIQ 301 Query: 281 CNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + RL + D P FD VL+DAPCS G IRR+P+ W +D+ Sbjct: 302 ESAHRLGISIIRTRRADLLNSAAFPVDSFDRVLLDAPCSGLGVIRRNPEAKWRLRPEDLT 361 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A QR++ + +KPGG +V+S CS ++++E V+ L V L LN Y Sbjct: 362 RLAETQRRMFANAVRMLKPGGRLVYSTCSTSREENEAVLHAFLSR-QDGVILEDLNQVYP 420 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + EG +R P GMDGFFA L + Sbjct: 421 C---WSELFTREGMLRSWPHC--------HGMDGFFAARLIK 451 >gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 429 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708] gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708] Length = 446 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 119/461 (25%), Positives = 199/461 (43%), Gaps = 46/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N R ++ L V K LD L D+ L+ +V ++R +D Sbjct: 2 TNPRQLAFIALKEV-HKGAYADVALDRVLQKFK---LPDNDRRLMTELVYGSVRRQRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + ++ L+ +L + Q+ Y + + A V+ VE AK + Sbjct: 58 TLIDKLATKKAHQQPPELRTILHLGFYQLRYQEKIPVSAAVNTTVELAKEN-GFSSLTGF 116 Query: 124 VNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR+ R ++R+ + P+W E G + + Sbjct: 117 VNGLLRQYLRLIESSSEPLKLPENPVERLGILHSFPDWIIEVWLEQLGLKETERLCAWMN 176 Query: 174 SPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVW 223 IDL V + +A + G+RL I +LPGF EG W Sbjct: 177 KTPTIDLRVNILRSSLEKVESAFKSAGVLVRPIPYLPQGLRLISSTGPIKNLPGFREGWW 236 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD+SA + L V+D+CAAPGGKT + + K+ A D + RL +L+ Sbjct: 237 TVQDSSAQLVSHLLDPKPGNVVIDVCAAPGGKTTHIGELMGDKGKIWACDQTASRLRRLK 296 Query: 281 CNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N+ RLHL + +I D+ + + D VL+DAPCS GT+ RH D W + + + Sbjct: 297 ENVQRLHLESIEICTGDSRNLTQFNNIADCVLLDAPCSGLGTMHRHADARWRQTPSSVQE 356 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 + Q++L+ +F+K GG++V++ C+L ++EEV+ + L +P P + Sbjct: 357 LSQLQKELISHTANFIKVGGVLVYATCTLHPMENEEVISQFLAVNPHWQIESPGSDLV-- 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ GW+++ P + MDGFF V LR+ Sbjct: 415 ------DIASPGWLKVWPHQRD--------MDGFFMVRLRK 441 >gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|224493264|sp|B4SUR0|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 429 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99] gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99] Length = 425 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 120/447 (26%), Positives = 200/447 (44%), Gaps = 34/447 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K SL+ L + S +D+ L+ + +R LP++D Sbjct: 1 MNLRALAARVAFQVLEKGTSLSVALPDQQQHLE----SGKDKALLAELSYGVMRHLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KLVSDCMSKPLKGKQRIVHQLLLIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ L ++ P W +RL+ Y + I + P + Sbjct: 116 NGVLRNIQRQEKPLPTDNDTLAFNTPAWIVKRLKAAYPENWQEVIEQSHQRPPMWLRNNK 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L E P + LPGF +G VQD +A L Sbjct: 176 QSQTRDEYLAALAEIDIPASAGKSSDAILLESPRDVAQLPGFEQGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293 + +LD CAAPGGKT L+ + ++ A+D ++RLE+++ NLDRL L A Sbjct: 236 LAPKDGELILDACAAPGGKTCHLLELANIELVAVDFDEKRLERVQQNLDRLSLKAKLVHG 295 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q K+L Sbjct: 296 DAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQTDIDELASLQSKILDHCWQ 355 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++KPGG ++++ CS+ Q++E+ ++ L + I Sbjct: 356 WLKPGGTLLYATCSILPQENEQQIRSFLARADDATLFPISEQPNPDDIGW---------- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP + MDGF+ L + Sbjct: 406 QITPG--------TENMDGFYYARLVK 424 >gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1] gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1] Length = 446 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 119/460 (25%), Positives = 200/460 (43%), Gaps = 40/460 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R V+ +L + RKR L + LS +D L+ +V T++ +D Sbjct: 3 NVRNVALDVLIDIERKRAYSNLSLHHVIETN---ELSAQDVALLTELVYGTIQRRDTLDY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + ++ ++ LLR+S+ Q++YLD + D AV+ AVE AKR + +R A LV Sbjct: 60 YLQPFIKGNIE---PWVRLLLRMSLYQMIYLDRIPDRAVLFEAVEIAKR-RGHRGIASLV 115 Query: 125 NSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR R + + +R+A + P W R +G + + + P Sbjct: 116 NGILRSVQRQGLRSLDDIKDESERLAIATSHPLWLVRRWIEQFGFDETKRMCEVNNFPPE 175 Query: 178 IDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 V T + A+ I K + F EG+ +QD S Sbjct: 176 QTARVNVMRATVEEVIDRLKEEGIEAIPSSVVPIGTKITKGNAAKTSVFREGLITIQDES 235 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + VLD CAAPGGKT + + +V ALD+ +++ + RL Sbjct: 236 SMLVAYALSPNETDVVLDCCAAPGGKTTHIAERMNNRGRVVALDIHDHKVKLIEQQAKRL 295 Query: 287 HLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + ++D+ + FD +LVDAPCS G IRR P++ + ++ DI + A Sbjct: 296 GLSNIEAKQLDSRQAHTQFAAETFDRILVDAPCSGLGVIRRKPEIKYAKNEKDITQLANV 355 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L +K GG +V+S C++D++++E+V+ + L P L S S+ Sbjct: 356 QLNILRAVAPLLKRGGTLVYSTCTVDREENEQVIAQFLAEHPEYDRDETLASRLPSSV-- 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + G +++ P + DGFF L++ + Sbjct: 414 -ASYVDRGMLQLLPHHVYS--------DGFFIATLKKKGE 444 >gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911] gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911] Length = 448 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 214/465 (46%), Gaps = 39/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + N R + LL + + + LL+ + +S +D L+ +V TL+ Sbjct: 1 MANK-NVREAAVELLEAIEKNQSYSNLLLNSSIKKN---DISSKDVGLLTELVYGTLQRK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ L + + + ++QLLR++ Q++YLD + D A + AVE AKR K ++ Sbjct: 57 MTLDYQMEPFLKNP-KKLESWVRQLLRITFYQMIYLDKIPDRAAIYEAVEIAKR-KGHKG 114 Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + +VN +LR R + ++R+A + P W +R + G ER + + Sbjct: 115 ISGMVNGVLRSLQRQGARSLDSIKDSVERLAMETSHPLWLVKRWVDQLGFERAKEMCELN 174 Query: 173 ISPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWW 224 ++ +K ++ L + ++ F EG Sbjct: 175 LTAPMQTGRVNLMKVSMDECMAMLEEEGYLVEASPVIPEAVKSKKGNLAHSRAFKEGYLS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + G + VLD CAAPGGKT + + +V +LD+ + +++ + Sbjct: 235 IQDESSMLAAYALGAEKDNHVLDACAAPGGKTTHIAEKLGNTGQVISLDLHEHKVKLIAD 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N RL L + MD+ FD +L+DAPCS G +RR PD+ +T+ +DI+ Sbjct: 295 NARRLGLSNIETKAMDSRTVQEHFNAGSFDRILLDAPCSGLGVMRRKPDMKYTKKEEDIM 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q KLL +K GG +V+S C++D++++E V++ L S P E +S Sbjct: 355 HLQKVQLKLLEAVAPLLKDGGTLVYSTCTVDREENENAVRQFLDSHP---EFSGDHSLAE 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + D AL+ + ++I P L G DGF+ +LR+ +Q Sbjct: 412 RLPDAVKALAKDFELQILPQDL--------GSDGFYIASLRKKVQ 448 >gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella parvula ATCC 17745] gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 3_1_44] gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella parvula ATCC 17745] gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 3_1_44] Length = 451 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 101/461 (21%), Positives = 182/461 (39%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + R L LS D+ +V +R +DA Sbjct: 11 NIRLLAVKALSEINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + ++LR+ + QI+Y+D V + A V+ +V+ AK+ R + V Sbjct: 68 IIVHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR V RE + I+ I P W GK++ + + Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQ 185 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225 + + IE +L + + + EG Sbjct: 186 PRLTARINTVKVSIEDCLKELEDLDWIVEQDTYIPEVVYIDGHQGHLEKAKPVLEGHITF 245 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + + +LD CAAPGGK+ + + + + + D+ +LE + N Sbjct: 246 MDKASMLVAHVVDPQPGELILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLELINQN 305 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + D K+ FD VLVDAPCS G +++ D+ W + +++ Sbjct: 306 AERLGVSIISTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIEL 365 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VK G +V+S C+++ ++E V+ K L + ++ +K Sbjct: 366 PPLQLEILEKASEMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHKNFI----IDPVSYKG 421 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A+ +G I P MDGFF ++RL Sbjct: 422 APQAI----DGMITTYP--------PRDHMDGFFMARMKRL 450 >gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9] gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9] Length = 465 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 198/465 (42%), Gaps = 47/465 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ ++ R ++ L V + +D LS D+ L+ +V ++R Sbjct: 20 MKT-LSTRQIAFTALREV-HRGAYADIAIDRTLQKFK---LSDHDRRLMTELVYGSVRRQ 74 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +DA++D + ++ L+ +L + + Q+ Y + A V+ V+ AK + Sbjct: 75 RSLDAIIDQIADKKSQQQPRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKEN-GFPG 133 Query: 120 FAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAIS 169 VN LR+ R + + + P W E + G+E + Sbjct: 134 LTGFVNGFLRQYIRLLEKTSDPLILPENLVERLGILYSFPNWVIEVWLSQLGQEETEKLC 193 Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219 IDL V + ++ + G+RL I +LPGF Sbjct: 194 QWMNQTPTIDLRVNILRASLEMVESVFKKAGILVDRIPHLPQGLRLVNPAGPIQNLPGFT 253 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 EG W +QDA+A + L ++D+CAAPGGKT + + K+ A D + RL Sbjct: 254 EGWWCIQDAAAQLVGHLLDPKPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRL 313 Query: 277 EKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 KL N RL L + +I D + D VL+DAPCS GT+ RH D W +D Sbjct: 314 RKLSENAQRLRLQSIEIFPGDSRNFTQFHHVADRVLLDAPCSGLGTMHRHADARWRQDPS 373 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A Q++L+ FVKPGG++V++ C+L Q++E+++++ L +P P Sbjct: 374 SVGDLAHIQKELISHTAKFVKPGGVLVYATCTLHPQENEDLIREFLHINPQWEMEKPNFD 433 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +S GW+++ P MDGFF V LR+ Sbjct: 434 FL--------DVSSPGWLKLWPHQQL--------MDGFFLVRLRK 462 >gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207310|gb|EFZ92260.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 429 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + S A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVASEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDATLSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans WP3] gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans WP3] Length = 428 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 125/449 (27%), Positives = 199/449 (44%), Gaps = 37/449 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ ++ V+ K ISL+ L + S +D+ L+ + +R LP++D Sbjct: 3 MNLRALAAKVVFQVLEKGISLSVALPDQQKHLD----SGKDKALLAELCYGVMRHLPQLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + L K+ + QLL + QI + + +A + E A R + K+V Sbjct: 59 KQVSDCMSKPLKGKQRIVHQLLLIGCYQIYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 117 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ L + P W +RL+ Y + I + P + Sbjct: 118 NGVLRTIQRQEKPLSTDNDTLAYNTPAWIIKRLKEAYPENWQQVIEQSHQRPPMWLRNNQ 177 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 ET+ L A + L P ++ LPGF G VQD +A L Sbjct: 178 QSQSRETYLQALAGLDIEAEAGNSPDSILLSSPRDVMQLPGFETGAASVQDGAAQWAATL 237 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + VLD CAAPGGKT + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 238 LAPQGDELVLDACAAPGGKTCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLEAELIH 297 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q K+ Sbjct: 298 GDAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAALQSKIFDHCW 357 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + V L + L+P+ Sbjct: 358 KWLKPGGTLLYATCSILPQENRDQVSAFLART-ADATLMPIEE----------------- 399 Query: 413 IRITPDML-EKIDGVSSGMDGFFAVALRR 440 + P +I MDGF+ L + Sbjct: 400 -QTNPQDTGWQIVPGQDNMDGFYYARLVK 427 >gi|114706034|ref|ZP_01438937.1| hypothetical protein FP2506_16249 [Fulvimarina pelagi HTCC2506] gi|114538880|gb|EAU42001.1| hypothetical protein FP2506_16249 [Fulvimarina pelagi HTCC2506] Length = 473 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 193/441 (43%), Positives = 254/441 (57%), Gaps = 9/441 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR V++ LL V+ ++ SL L D ++G FR L RDQ LV+AI+ LRF Sbjct: 40 KPGLKARQVAAKLLGAVIEQQTSLDGLTDPDHGHPHFRQLEARDQGLVKAILLTALRFRG 99 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + + L LP +L LL V+ AQI +LDV D A VDLAV A+ D R F Sbjct: 100 TLTQEIAARLDRPLPSNATALNHLLHVAAAQIRFLDVPDSAAVDLAVTAAEADPRTRRFK 159 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN++LRR++RE P W ERL YG+ R AI+ A P IDLT Sbjct: 160 GVVNAVLRRMTRELGGAEVTTEPAIDCPNWLLERLIAAYGEPRAKAIAAAHRMPAPIDLT 219 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 VK D E WA +L ++ IRL SI SL GFAEG WWVQDASA++PV+LFG L Sbjct: 220 VKTDPEAWAERLGGQVVSGPSIRLDATTQGSIASLDGFAEGKWWVQDASAALPVRLFGDL 279 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + DLCAAPGGKTAQL++S A VTA + SK R ++L NL RL + + + + Sbjct: 280 TGKTAADLCAAPGGKTAQLVLSDATVTACEASKSRAKRLVANLTRL-AHDAETLIGPFQE 338 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FDAVL+DAPCSSTGT+RRHPDV T+ DD+ + A QRKLL + V PGG Sbjct: 339 TLGDRTFDAVLLDAPCSSTGTLRRHPDVGHTKSLDDVRRLAEVQRKLLDAAANHVAPGGT 398 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VFSNCS+D + EE+V+ L P+ D A ++ +G +R TP+ML Sbjct: 399 LVFSNCSIDPIEGEELVKAFLAERKDFTRR-PIEPTELPGFDKA--VTSDGDLRTTPEML 455 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 I G+DGF+A L+R+ Sbjct: 456 SAI----GGIDGFYASRLQRV 472 >gi|83309246|ref|YP_419510.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum AMB-1] gi|82944087|dbj|BAE48951.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum AMB-1] Length = 431 Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 169/444 (38%), Positives = 250/444 (56%), Gaps = 17/444 (3%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK S + R ++ LLS V+ K L +LD DS L RD+ VR ++ TLR Sbjct: 1 MKRASSTSPRAIAVDLLSMVLDKGRLLDDVLD----DSRLSRLEDRDRGFVRMLLGTTLR 56 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 L +ID +++ L + + LR+ + Q+L+LDVA +A + V+ K K Sbjct: 57 RLGQIDTLIEHCLDKPMRAGAAGAEHALRLGICQLLFLDVAPHAAISTTVDLVKGSKL-A 115 Query: 119 HFAKLVNSILRRVSRE-KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 FAKL+N++LRR+ RE + + AG+ PEW YG++ AI+ A + Sbjct: 116 GFAKLLNAVLRRLDREGRDLAAAQDAGLLNTPEWLWRSWVKAYGEDGAHAIAAAHLIEAP 175 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 +D+TV D WA +L A +LPTG +R + S+ +LPGF +G WW+QDA+A++P +L Sbjct: 176 VDITVAADSALWAERLEASVLPTGSLR-RAAGGSVAALPGFDDGAWWIQDAAAALPARLL 234 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 G + +V DLCAAPGGK QL V+GA +TALD S +RL + NL RL L A ++E D Sbjct: 235 GDVRGKAVADLCAAPGGKALQLAVAGADLTALDRSAKRLVRFTANLKRLGLKA-KVVEAD 293 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A + P FDA+L+DAPCS+TGT+RRHPDV ++ +++K A Q +LL I +KP Sbjct: 294 AGAWTPPAPFDAILLDAPCSATGTLRRHPDVARHKNPAEVMKLAGVQARLLQAAIPMLKP 353 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+ CSL+ ++ E + +L P+ VP+ +A ++PEG +R P Sbjct: 354 GGTLVYCTCSLEAEEGPEQIAALLA-GGAPLRRVPIRPEEVGG--LAELITPEGDLRTLP 410 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 L GMD FFA L ++ Sbjct: 411 CHLAS----QGGMDAFFAARLEKV 430 >gi|23016809|ref|ZP_00056561.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum magnetotacticum MS-1] Length = 432 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 165/437 (37%), Positives = 254/437 (58%), Gaps = 15/437 (3%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ LLS V+ K L +LD DS L +RD+ VR ++ TLR L +IDA Sbjct: 9 NPRAIAVDLLSMVLDKARLLDDVLD----DSRLSKLEERDRGFVRMLLGTTLRRLGQIDA 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +++ + + + LR+ + Q+L+LDVA +A + V+ K K FAKL+N Sbjct: 65 LIEHCVEKPMRAGAAGAEHALRLGICQLLFLDVAPHAAISTTVDLVKGSKL-AGFAKLLN 123 Query: 126 SILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LRR+ RE E + ++ AG+ PEW YG++ AI+ A + +D+TV Sbjct: 124 AVLRRLDREGRELVTEQDAGLLNTPEWLWRSWVRAYGEDGARAIAQAHLIEAPVDITVAA 183 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D WA +L A +L TG +R + SI +LPGF E WW+QDA+A++P +L G + + Sbjct: 184 DPALWAERLEASILATGSLR-RAGGGSIAALPGFNEAAWWIQDAAAALPARLLGDVRGKA 242 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 V DLCAAPGGK QL V+GA++TALD S +RL + NL RL L A ++E DA + P Sbjct: 243 VADLCAAPGGKALQLAVAGAELTALDRSAKRLVRFTDNLKRLGLKA-KVVEADAGAWSPP 301 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FDA+L+DAPCS+TGT+RRHPDV ++ +++K A Q +LL + +KPGG +V+ Sbjct: 302 APFDAILLDAPCSATGTLRRHPDVARHKNPAEVMKLAGVQARLLRAALPMLKPGGTLVYC 361 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL+ ++ E + +L P++ VP+ + + +A ++ +G +R P L ++ Sbjct: 362 TCSLEPEEGPEQIAALLAE-GAPLKRVPIRAE--EVGGLAQLITADGDLRTLPCHLAEL- 417 Query: 425 GVSSGMDGFFAVALRRL 441 GMD FFA L ++ Sbjct: 418 ---GGMDAFFAARLEKM 431 >gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|224493265|sp|A9N8B3|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 429 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C] Length = 456 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 196/444 (44%), Positives = 263/444 (59%), Gaps = 9/444 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ KR SL L D EYG + LS RD++L RAI+ LR + Sbjct: 16 PGLAVRQVCVRLLGAVLDKRTSLAGLTDNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQ 75 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L L+ LP + +SL LL +S+ QILYLD+ D+A +DLAV AK D R F+ Sbjct: 76 ITVALSRFLVRPLPAQAFSLHHLLHISITQILYLDIPDHAAIDLAVRVAKIDPRMRRFSG 135 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN+ILR +RE L + I IP WF + L + YG E+ I +DLTV Sbjct: 136 LVNAILRNFAREAPILRMQTPTIKAIPMWFGQLLVSTYGAEKADQILAIQSITPPLDLTV 195 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L ++LP G +RL SI LPG+AEG WWVQD +A++P +L G + Sbjct: 196 KSDSAGWAKRLGGIVLPNGSVRLISSAYSIADLPGYAEGAWWVQDVAAALPARLLGNVYG 255 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL + GA V ALD+S RL++LR N+DRL+ D ++ Sbjct: 256 KKVADLCASPGGKTAQLALQGADVMALDISANRLKRLRENMDRLNFS-VHYWLGDLREFH 314 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P +LFDAVL+D PCSSTGTIRRHPD+LWT+ DD+ K A Q LLL I+ VK G VV Sbjct: 315 PDQLFDAVLLDTPCSSTGTIRRHPDILWTKTMDDVTKLAEVQYGLLLAAIALVKKNGRVV 374 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 FSNCSL +++ E++V+K+L + + L P+ + + MA +S EG++R P Sbjct: 375 FSNCSLAREEGEDLVKKILATR-DDIVLEPILAE--EMGAMAHLISMEGFLRTIPSDCCY 431 Query: 423 IDGVSS-----GMDGFFAVALRRL 441 + + GMDGFFA R++ Sbjct: 432 ENFNAEEKLFLGMDGFFAARFRKV 455 >gi|319406332|emb|CBI79969.1| SUN-family protein [Bartonella sp. AR 15-3] Length = 455 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 193/444 (43%), Positives = 266/444 (59%), Gaps = 9/444 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ KR SL L D EYG + LS RD++L RAI+ LR + Sbjct: 15 PGLIVRQVCVRLLGAVLDKRTSLAGLTDNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQ 74 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L L+ LP + +SL LL +S+ QILYLD+ D+A +DLAV AK D R F+ Sbjct: 75 ITVALSHFLVQPLPAQAFSLHHLLHISITQILYLDIPDHAAIDLAVRVAKIDSRLRRFSG 134 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN+ILR +RE L + I IP WF++ L + YG E+ I +DLTV Sbjct: 135 LVNAILRNCAREAAILRVQTPTIEAIPTWFRQLLVSTYGVEKADQILAIQSIIPPLDLTV 194 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L ++LP G +RL S+ LPG+AEG WWVQD +A++P++L G +++ Sbjct: 195 KSDSAGWAKRLGGIVLPNGSVRLVSSAYSVADLPGYAEGAWWVQDVAAALPIRLLGNIHD 254 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL + GA VTA+D+S RL++LR N++RL+ D + Sbjct: 255 KKVADLCASPGGKTAQLALQGADVTAIDISANRLKRLRENINRLNFS-VHYWHGDLRQFH 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P +LFDAVL+D PCSSTGTIRRHPD+LWT+ +D+ K A Q LLL I+ VK G +V Sbjct: 314 PDQLFDAVLLDTPCSSTGTIRRHPDILWTKTMEDVTKLAEMQYDLLLAAIALVKKNGRIV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 FSNCSL K++ E++V+K+L + + L P+ + + MA +S EG +R P Sbjct: 374 FSNCSLAKEEGEDLVKKILSTRH-DIVLEPILAE--EMGAMAHLVSMEGCLRTIPSDCCD 430 Query: 423 IDGVSS-----GMDGFFAVALRRL 441 + + GMDGFFA R++ Sbjct: 431 GNFNTEEKLFLGMDGFFAARFRKV 454 >gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. 1_1_55] gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. 1_1_55] Length = 431 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ +N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKNKINLRSLAAQAIEQVVEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLINKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLVEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVDANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNATWEHLKPGGTLVYATCSILPEENSQQISAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGPEEGDGFFYAKLIK 428 >gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22] gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22] Length = 431 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ +N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKNKINLRSLAAQAIEQVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLINKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLVEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVDANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNATWEHLKPGGTLVYATCSILPEENSQQISAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGPEEGDGFFYAKLIK 428 >gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 429 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVVAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment'] Length = 467 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 129/464 (27%), Positives = 206/464 (44%), Gaps = 43/464 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR ++ +L+ V ++ + LLD + + LSQ+D+ L + LR+ R+D Sbjct: 16 MHARRLAFEILTQVEEQQAYASLLLDAKLKQAR---LSQQDRALATELTYGVLRWQGRLD 72 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR---HF 120 +L V R +L++LLR+ QIL+L V YA V+ V A+ ++ Sbjct: 73 YLLAAVTDRPWDRVDPALRRLLRLGAYQILFLTRVPAYAAVNETVALAQDVMRSQLKPVA 132 Query: 121 AKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDA 171 VN+ILRR+ + A P W R G E A+ A Sbjct: 133 KAFVNAILRRLLERHATIRFPDPSGDPVGALAARWSHPSWLVARWLKRLGPEETEALLKA 192 Query: 172 CISPLYIDLTVK---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEG 221 + + V E +L + +G L + E++ P FA+G Sbjct: 193 NNDTSALSVMVNLVKRQPEEVQERLTRIAGSVTPGRFVSGAFHLNDGAEALRD-PAFADG 251 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278 ++ D +A++PV + VLD C+ GGKT + +V ALD S R + Sbjct: 252 WYFPMDEAAALPVLMLNPQPGDVVLDACSGGGGKTALLLGRLGGQGRVIALDPSARAHRR 311 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 LR RL L ++ DA + D +LVDAPCS GT+RRHP+ W + Sbjct: 312 LREARTRLSLDRVFPVQADARQAAQLFTRQVDRILVDAPCSGLGTLRRHPERRWQQQEAG 371 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + A Q +LL ++PGG +V+S CSL+ ++++ VV+ LR P E V +++ Sbjct: 372 LAALARLQLELLHGVAPVLRPGGFLVYSTCSLEPEETDVVVETFLRDFP---EFVAADTS 428 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +A + +G +R P G+DGF+A+ LRR Sbjct: 429 GGLPATVAGLIDSKGALRTWPH--------RHGLDGFYAIRLRR 464 >gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|46396986|sp|Q8ZLM5|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 429 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546] Length = 426 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 123/452 (27%), Positives = 206/452 (45%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGHSLSNALP-----AAQQTIKPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 SIANELMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKTLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R + + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRNQEELDAMAVSHNAGKYGHPGWLLKLLQESYPQQWQEIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + E P + LPGF +G VQDA+A + Sbjct: 175 VNHQHHSRDEYLELLKNENIDNTIHSEAEDAVKLAAPCDVTKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA G++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLTPQDGELILDCCAAPGGKTAHILERTQGSEVVAIDCDDTRLKRVHDNLQRLNLKA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D+ + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 KVICGDARNPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q+++E V+ L + + + Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENKEQVKAFLARTSDA--------------KLQGSDV 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 401 DNPGRQILPG--------EEDMDGFYYAILTK 424 >gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224493260|sp|B5FJI4|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 429 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLC+APGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCSAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DIV+ A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIVELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220] gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter youngae ATCC 29220] Length = 429 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 119/457 (26%), Positives = 216/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKHLNLRSMAAQAVEQVVEKGQSLSNVLPAM-----QQKVADKDKALLQELCFGALRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ ++ L+ V Q+L+ + +A + VE A K + Sbjct: 56 SQLEWMIQQLMERPMTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVVIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGK-ERVLAISDACISPL 176 L+N +LR+ R + ELL A + P W +R++ Y + + ++ P+ Sbjct: 115 KGLINGVLRQFQRRQEELLTEFAQSDLRFLHPSWLVKRIKAAYPQQWEAILEANNQRPPM 174 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDAS 229 ++ + +L A TG P +++LPGF +G VQDAS Sbjct: 175 WLRVNRNHHTRDAWLELLAEAGLTGFPHPDYPDAVRLETPAPVLALPGFEQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V N +LDLCAAPGGKT ++ + V A+DV ++RL ++ NL RL Sbjct: 235 AQGCVSYLQPQNGEQILDLCAAPGGKTTHILEVAPQANVMAVDVDEKRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS++G IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPQQWCGEQQFDRILLDAPCSASGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + +KPGG +V++ CS+ +++++ + L +P V ++ Sbjct: 354 AEILNATWTHLKPGGTLVYATCSILPEENQQQIAAFLARTPDAV--------------LS 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE + + DGFF L + Sbjct: 400 ETGTPE-------QPGRQNLPDAEDGDGFFYAKLIKK 429 >gi|217977604|ref|YP_002361751.1| sun protein [Methylocella silvestris BL2] gi|217502980|gb|ACK50389.1| sun protein [Methylocella silvestris BL2] Length = 448 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 166/439 (37%), Positives = 241/439 (54%), Gaps = 7/439 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ ARL ++ +L+ ++ K SL S + L RD L R+IV LR L Sbjct: 14 PGLPARLAAAAILNDIVGKAHSLEDCFSPGAIPSRLQGLDPRDVALTRSIVTAALRRLGT 73 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L L LPR L+ L + AQIL+LDV D+A VDLAV + + ++ FA Sbjct: 74 IRKTLGEFLDKGLPRPVAHLEWTLIAAAAQILFLDVPDHAAVDLAVRATRLENKSAPFAG 133 Query: 123 LVNSILRRVSREKIELLQRIA-GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 ++N++LR ++R + ++L+ P W R YG++ I+ A +DLT Sbjct: 134 VINAVLRNIARGRDKILEDSDPFDHDTPPWLAARWRKTYGEDLARKIARANRDEPTLDLT 193 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D WA +L ++LPTG +RL I LPGFAEG WWVQDA+A++P +L Sbjct: 194 VKSDPALWAERLGGLVLPTGSVRLLTHA-PIAELPGFAEGEWWVQDAAAALPARLIAPAP 252 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V D CAAPGGK AQL +GAKVTA+D S RL++L N RL L+A+ ++ Sbjct: 253 GARVADFCAAPGGKAAQLAAAGAKVTAIDRSAERLKRLAANFSRLDLHADVVVA--DIVG 310 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDA+L+DAPC +TGTIRRHPD+ W + DI A Q ++L + + V+PGG++ Sbjct: 311 LKAQPFDAILIDAPCLATGTIRRHPDIAWIKKPTDIASLAQVQARMLDKAVELVRPGGVI 370 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E + +LR +P + + + D+ ++ EG +R P L Sbjct: 371 VYCTCSLEPEEGELQIAALLRRNPDMLR---SKISPHEVGDVEGVINNEGELRTLPCHLP 427 Query: 422 KIDGVSSGMDGFFAVALRR 440 D SG+DGFFA L R Sbjct: 428 ADDPRLSGLDGFFAARLIR 446 >gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75480382|sp|Q57J62|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766862|sp|C0PZV1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 429 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|206577662|ref|YP_002236309.1| ribosomal RNA small subunit methyltransferase B [Klebsiella pneumoniae 342] gi|224493255|sp|B5XNC2|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella pneumoniae 342] Length = 431 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ +N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKNKINLRSLAAQAIEQVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLINKLMARPMTGKQRTVHFLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ + P+W +RL+ + ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLVEFAEHENRYLHPKWLLKRLQQAWPQQWQEIVDANNQRPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRNHHSRDEWLALLKEAGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A ++ N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRYLLPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAE-VKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L +P EL + Sbjct: 354 AEILNSTWEHLKPGGTLVYATCSILPEENSQQISAFLARTP-DAELHATGTPASPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------QQNLPGPEEGDGFFYAKLIK 428 >gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM 30120] gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM 30120] Length = 428 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 123/458 (26%), Positives = 207/458 (45%), Gaps = 45/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ SL+ +L R ++ +D+ L++ I LR+L Sbjct: 1 MKNKYNLRSIAATAISQVLDNGQSLSTVLPDL-----QRNINDKDKALLQEICFGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--R 118 P+++ + ++ L K+ +L L+ V + Q+LY + +A + V+ A K + Sbjct: 56 PKLEWFISQLMEKPLTGKQRTLHYLIMVGIYQLLYTRIPAHAALAETVDGAVALKRPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 V R + E + P W +R++ Y E I DA + Sbjct: 116 GLINGVLRSFLRQQVQLEERNTNNNSQYLHPSWLLKRIQTAYP-ETWQNIVDANNQRPPM 174 Query: 179 DLTV---KFDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDAS 229 L V E + L + S+ LPGF +G VQD S Sbjct: 175 WLRVNSQHHTAEQYLALLEQADITAYLHPSHPSAIRLEEATSVTRLPGFEDGWSTVQDVS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A +L +N ++LDLCAAPGGKT ++ A V A+D+ RL++++ NL RL Sbjct: 235 AQGCAELLSPINGENILDLCAAPGGKTTHILELAPKAHVLAVDIDDARLKRVKENLQRLK 294 Query: 288 LYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 +A I ++ +LFD +L+DAPCS+TG IRRHPD+ W R DI + + Q Sbjct: 295 QHATVIQGDGTKPEEWAKDQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIQELSQLQA 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L S++KPGG +V++ CS+ +++ + ++ L +D + Sbjct: 355 QILEAVWSYLKPGGTLVYATCSIMPEENSQQIKHFLSKH----------------VDARI 398 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E ++I P ++G DGFF L + Q Sbjct: 399 NDGTELGLQILPS--------ATGGDGFFYARLLKQAQ 428 >gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|224493267|sp|B4TXB2|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 429 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT+ + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTSHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1] gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1] Length = 429 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKHQNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDRALLQELSFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P++D ++ ++ + K+ ++ L+ V + Q+L+ + +A + VE A K + Sbjct: 56 PQLDWLITQLMSRPMTGKQRTVHYLIMVGLYQLLHTRIPAHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P+W +R+ Y ++ + + P+ Sbjct: 115 KGLINGVLRQFQRQQEALLAEFATSDSRFLHPDWLVKRIRKAYPQQWQAVLEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P S+ +LPGF G VQDAS Sbjct: 175 WLRVNRTHHTRDAWLTLLETSGLKGYTHPRYPDAVRLETPTSVQALPGFDAGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A ++ N ++LDLCAAPGGKT ++ + V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMRFLMPENGETILDLCAAPGGKTTHILEVAPEANVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C + FD +L+DAPCS+TG IRRH D+ W R DI + A Q Sbjct: 295 MKAE-VKQGDGRYPSQWCDGRQFDRILLDAPCSATGVIRRHSDIKWLRRDRDIAELALLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ E + L+ + V Sbjct: 354 AQILDAVWPHLKPGGTLVYATCSILPEENAEQIAAFLKRTGDAVL-------------SE 400 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ P + DGFF L + Sbjct: 401 TGTPEQPGLQNLP--------AADEGDGFFYAKLIK 428 >gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|224493263|sp|B4TJX9|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 429 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-134-V-Col7a] gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella atypica ACS-134-V-Col7a] Length = 452 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 103/461 (22%), Positives = 188/461 (40%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + RK +L LS D+ +V +R +D Sbjct: 12 NIRLLAVKALSDINRKGAYANIVLQDYILKY---NLSDLDRRFFTELVYGVVRRRNYLDV 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + + + ++LR+ V QI+Y+D V + A V+ +V+ AK+ R + V Sbjct: 69 IIVHFANRPIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 126 Query: 125 NSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N+ILR V RE+ ++ I+ I IP W + +G+++ + Sbjct: 127 NAILRSVIREQDSIGIEDLAANDIEAISFIYNIPLWLINLWISEFGRDKTEDLCAWFNEQ 186 Query: 176 LYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + + I + S+ F +G Sbjct: 187 PKLTARINTILIDIPQCLTMLNEQGWAVTQDSNYEDIIYINSHRGSLEKSEAFIKGYITF 246 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + +L +LD CAAPGGK+ + + + + + D+ + ++E + N Sbjct: 247 MDKASMLVARLVNPQPGERILDCCAAPGGKSMYIAALMDNVGSLMSCDIHEHKIELMNSN 306 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 DRL DA FD VLVDAPCS G +++ D+ W + + + Sbjct: 307 ADRLGASIVHTKVQDATKLPDSWNSYFDRVLVDAPCSGLGILQKKLDMRWRKQESILSEL 366 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L + VK G +++S C+L+ +++EEVV+ L+ ++P+ + Sbjct: 367 PSLQLAILERAAMTVKEKGYLIYSTCTLNYKENEEVVEAFLQKHK-EFSIIPVADDFPLK 425 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S G I P + MDGFF V ++R+ Sbjct: 426 -------SNSGMITTYP--------PTDDMDGFFMVKMQRI 451 >gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia rustigianii DSM 4541] gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia rustigianii DSM 4541] Length = 428 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 117/457 (25%), Positives = 208/457 (45%), Gaps = 43/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ K SL+ +L R ++++D+ L++ + LR+L Sbjct: 1 MKNKYNLRSIAATAIGQVLDKGQSLSTVLPEL-----QRNINEKDKALLQEMCFGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--R 118 P+++ + ++ L K+ L L+ V + Q+LY + +A + V+ A K + Sbjct: 56 PKLEWFISQLMEKPLTGKQRILHYLIMVGIYQLLYTRIPAHAALAETVDGAVALKRPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177 V R + E + P W +RL+ Y + + + P++ Sbjct: 116 GLINGVLRSFLRQQVQLEERNHNNNSQYLHPSWLLKRLQIAYPDQWQDIVDANNQRPPMW 175 Query: 178 IDLTVKFDI-ETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASA 230 + + + + + + L + S+ LPGF EG VQD SA Sbjct: 176 LRVNPQHNTTDQYLTLLEQAGITAHLHPTHPNAVRLEDATSVNRLPGFDEGWSTVQDVSA 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288 +L ++ S+LDLCAAPGGKT ++ A V A+D+ RL++++ NL RL Sbjct: 236 QGCAELLSPVDGDSILDLCAAPGGKTTHILELAPKAHVLAVDIDDSRLKRVKENLQRLKQ 295 Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A I ++ + FD +L+DAPCS+TG IRRHPD+ W R DI + + Q + Sbjct: 296 QAIVIQGDGTKPEEWAHGQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELSQLQFQ 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L ++KPGG +V++ CS+ +++ +Q+ L +D ++ Sbjct: 356 ILEAIWPYLKPGGTLVYATCSIIPEENSLQIQRFLTKH----------------VDASIT 399 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E ++I P ++G DGFF L + Q Sbjct: 400 DGTEFGLQILPS--------TTGGDGFFYARLLKQAQ 428 >gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2] gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2] Length = 453 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 190/460 (41%), Gaps = 39/460 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ +L + ++ ++ D + R++ L +VN TL+ +D Sbjct: 6 SRALAVQILRRIEEEKAYANLVMQKALHDLS----DPRERQLATLLVNGTLKHRLTLDYA 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L L + + ++ +LR+S QILYL + ++ VE K+ + + LVN Sbjct: 62 LRRHLRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKKQQG--KYTSLVN 119 Query: 126 SILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 S+LRRV ++L + PEW +R YG A+ A P Sbjct: 120 SVLRRVLETGWDMLWPSKEKEPVRFLSLRYSHPEWMVKRWLKRYGMADTEALCQANNEPA 179 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 + + +L + + E S+ LP F EG + VQD Sbjct: 180 PVWIRTNTLKISRADLQARLEGEGVKVTIGERVPESLVIEDFGSLDKLPSFQEGHFTVQD 239 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD C APGGKT + + ++ A D+ +++ + Sbjct: 240 ESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENQGEILAFDIHPHKVKLIEDLAA 299 Query: 285 RLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL + DA + VLVDAPCS G +RR D+ W ++ D+I Sbjct: 300 RLGITIIRAQAGDARELAGVKDASCHKVLVDAPCSGLGVLRRRADMRWHKEEDEIKTLPA 359 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV-PLNSAYWKSI 401 Q +L + V GG +V+S C+++ +++ EVV+ + P + + Y + Sbjct: 360 LQLAILERAAQCVAAGGELVYSTCTIEPEENFEVVKAFRANHPEFITVDFSGELPYSLAS 419 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +G+++I P GMDGFF RR+ Sbjct: 420 EQDRKQAAKGFLQILPH--------KQGMDGFFLAKFRRV 451 >gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703] gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703] Length = 431 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 216/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ +++ V+ SL+ L D ++++D+ L++ + LR L Sbjct: 1 MKSKYNLRSIAAAVIAQVLDHGQSLSQSLPAVQRD-----IAEKDRALLQELCFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P++D + ++ L K+ L LL V + Q+LY + +A + VE A K + Sbjct: 56 PQLDWCIGQLMAKPLTGKQRVLHYLLMVGLYQLLYTRIPPHATLAETVEGATALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N + +R E ++ +Q+ + + PEW RL+ Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQEELVQKMQKTSALHAHPEWLLTRLKKAYPETWQDIIDANNQHPPM 174 Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + + + L +P + P + SLPGF +G VQDAS Sbjct: 175 WLRVNRQHNERDGYIALLQEQGIPASKHPDYQDAIKLDTPSPVTSLPGFEQGWITVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A NN +LDLCAAPGGKT I A+V A+DV + RL +++ NL RL Sbjct: 235 AQGCAYWLDPQNNEDILDLCAAPGGKTTHILEIAPKARVLAVDVDEHRLARVKENLQRLR 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 +A D+ + D ++C FD +L+DAPCS+TG IRRHPD+ W R DIV+ A Q Sbjct: 295 QHA-DVRQGDGRVPEEWCGDSQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIVELANLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R++L +K GG +V++ CS+ +++++ + L+ V + Sbjct: 354 REILDAIWPRLKIGGTLVYATCSILPEENQQQIISFLQRHADAVLRETGSPEKP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P + DGFF L ++ Sbjct: 408 -------GVQKLPSPQDG--------DGFFYAKLIKI 429 >gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905] gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905] Length = 453 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 124/460 (26%), Positives = 200/460 (43%), Gaps = 42/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L V + + LL+ + +D+ L+ + TL+ +D Sbjct: 12 NVRDAALSILLAVDKNQAYSNLLLNETIKRHK---IEAKDRALLTELTYGTLQHKMTLDY 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ + S+ + ++ LLR+S+ Q+ YL + +A V+ AVE AKR + +R A V Sbjct: 69 YLEPFIRGSI---DHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKR-RGHRGIASTV 124 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR V R+ ++R+A + P W +R + YG E + P Sbjct: 125 NGILRSVLRQGVPAITDIENPIERLAIETSHPIWLVQRFVDNYGLEVATGMLHENNVPPM 184 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDAS 229 + V E +L A L L F EG +QD S Sbjct: 185 QTVRVNTTKVTVEQAIAELEAEGLTAKQSEVIPECLHLTNGQPARTHAFKEGHITIQDES 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + IP + + VLD+CAAPGGKT ++ + + A D+ +L+ + N +RL Sbjct: 245 SMIPANVLNPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERL 304 Query: 287 HLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + +D +DAVLVDAPCS G +RR PD+ +T+ +D+ Sbjct: 305 GLDIIETAPIDGRKAPEFLQAESYDAVLVDAPCSGLGVMRRKPDIKYTKREEDLENLQTI 364 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q LL +K G +V+S C++DKQ++E V+ L + P +E + L S K + Sbjct: 365 QLALLDAATKVLKIEGKLVYSTCTVDKQENEGTVKAFLATHP-EMEAIQLESLPTKLAEK 423 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G +++ P G DGFF A R+ + Sbjct: 424 Q----ANGMLQVFPQDF--------GSDGFFVAAFRKKGE 451 >gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2] gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2] Length = 451 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 214/467 (45%), Gaps = 40/467 (8%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK N R + LL + + + LL+ + + Q+D L+ + TL+ Sbjct: 1 MKKLKKKNVRETALELLEAIEKNQSYSNLLLNNAIKKN---EIDQKDIGLLTELTYGTLQ 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 +D L L + + + + QLLR+++ Q+++LD + D A + AVE AKR + Sbjct: 58 RRMTLDFYLQPFLAGN-KKIESWVNQLLRLTLYQMVFLDKIPDRAAIFEAVEIAKRW-GH 115 Query: 118 RHFAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + + +VN +LR V R + + ++R++ + P W +R + G E + + Sbjct: 116 KGISGMVNGVLRNVQRKGLPDLEQIEDSVERLSIETSHPAWLVKRWADQLGFEETKKMCE 175 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGV 222 ++ V E L + +K L ++ + F +G+ Sbjct: 176 INLTAPLQTARVNEVKASREECLSLLKEEGFEVEPSQFIPVAIKCLRGNLANSRVFKDGL 235 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 +QD S+ + G N +LD CAAPGGKT + + +V +LD+ + +++ + Sbjct: 236 ITIQDESSMLAAYALGGNPNEKILDACAAPGGKTTHIAEKMQNTGQVISLDLHEHKVKLI 295 Query: 280 RCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N DRL L +D ++ K+ FD +LVDAPCS G +RR PD+ +T+ DD Sbjct: 296 NDNADRLGLSNIKTNALDSRKVQEHYEKESFDRILVDAPCSGLGVMRRKPDMKYTKKEDD 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + QR LL +K GGI+V+S C++DK++++ VVQ L+++ + + Sbjct: 356 LYHLHKIQRNLLDAVSPLLKKGGILVYSTCTVDKEENQHVVQSFLKNNAEFEGDISVRER 415 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 K+I ++I P + G DGF+ LR+ +Q Sbjct: 416 MPKAI---APFIDNFELQILPQDI--------GSDGFYIACLRKKVQ 451 >gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis NBRC 100599] gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase [Brevibacillus brevis NBRC 100599] Length = 448 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 117/461 (25%), Positives = 199/461 (43%), Gaps = 39/461 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G AR ++ +L+ V + L LS D LV +V T++ Sbjct: 3 KKG--ARDIALDVLNRVEEHKSYSNLELRNVLDR---ENLSAADAGLVTELVYGTIQRKM 57 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D VL + + + + ++ LLR+S+ QI +LD + + A V AVE AK+ + ++ Sbjct: 58 TLDHVLSHFVGN--KKVQTWVRNLLRLSLYQIHFLDRIPERAAVHQAVEIAKK-RGHQGI 114 Query: 121 AKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A +VN +LR V R+ ++ A PEW + N YG+E +AI +A Sbjct: 115 ASMVNGVLRNVLRQPDVWERQPKGSRALQIAVAYSHPEWLVRQWLNVYGEETTIAICEAN 174 Query: 173 ISPLY--IDLTVKFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + I + + L + + F EG + Sbjct: 175 NRTPHSAIRVNAWKTTKDQVLDKLAEEGLEGQASSVSPHAILMEGGHVAGSRLFKEGYFT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + VLD CAAPGGKT ++ + ++ A DV + + + Sbjct: 235 IQDESSMLVAPALAAQPGMRVLDACAAPGGKTTHIAEMMENRGEIIASDVHPHKRDLIAN 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL + I DA D K FD +L+DAPC+ G IRR PD+ W + +D+ Sbjct: 295 AAKRLGITIIQPIVSDALDLPEKALGTFDRILLDAPCTGFGVIRRKPDLKWNKTPEDVRA 354 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A Q +LL + GG++V+S C+++ +++E+V++ + P V L + Sbjct: 355 IAQLQYELLKTLAPLLAEGGVMVYSTCTIEPAENQEIVRRFVEEHPDFVFDDTLAQDLPE 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + + ++I P E DGFF L+R Sbjct: 415 AVRGHVDETGA-CVQILPHHFES--------DGFFIARLKR 446 >gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 6_1_27] gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp. 6_1_27] Length = 451 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 102/461 (22%), Positives = 182/461 (39%), Gaps = 46/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N RL++ LS + R L LS D+ +V +R +DA Sbjct: 11 NIRLLAVKALSEINRNGAYANIKLQEYLQKYH---LSDLDRRFFTELVYGVIRRKNYLDA 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + ++LR+ + QI+Y+D V + A V+ +V+ AK+ R + V Sbjct: 68 IIVHFAKRPLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKK--LTRGLSGFV 125 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR V RE + I+ I P W GK++ + + Sbjct: 126 NAVLRSVLRESDSISIGELAKSEAEEISFIYNQPLWLVNLWIKEMGKDKTVDLCSWFNEQ 185 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWV 225 + + IE +L + + + EG Sbjct: 186 PRLTARINTVKVSIEDCLKELEDLDWIVEQDTYIPEVVYIDGHQGHLEKAKPVLEGHITF 245 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 D ++ + + +LD CAAPGGK+ + + + + + D+ +LE + N Sbjct: 246 MDKASMLVAHVVDPQPGERILDCCAAPGGKSMHMASLMNNTGAIMSCDIYDHKLELINQN 305 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + D K+ FD VLVDAPCS G +++ D+ W + ++K Sbjct: 306 AERLGVSIISTKLQDGRYLPDNWKEQFDRVLVDAPCSGLGILQKKLDMRWRKTESLLIKL 365 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VK G +V+S C+++ ++E V+ K L + ++ +K Sbjct: 366 PLLQLEILEKASEMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHKNFI----IDPVSYKG 421 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A+ +G I P MDGFF ++RL Sbjct: 422 APQAI----DGMITTYP--------PRDHMDGFFMARMKRL 450 >gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360778|sp|Q5PIT6|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493266|sp|B5BGV5|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 429 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|39998462|ref|NP_954413.1| Sun protein [Geobacter sulfurreducens PCA] gi|39985409|gb|AAR36763.1| Sun protein [Geobacter sulfurreducens PCA] gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter sulfurreducens KN400] Length = 448 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 197/464 (42%), Gaps = 41/464 (8%) Query: 1 MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M R + +L + R+R L+D E A L D+ L+ +V LR Sbjct: 1 MNQSTADPRRSAFDILVRIERERTFAEPLIDRELSGGA---LKGPDRGLLTELVYGVLRR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D ++D + + + S+ LLR+ + QI +LD + A V+ V A+ ++ Sbjct: 58 TATLDYLVDLFCATRAAKLERSVLILLRLGLYQIFFLDRIPVSAAVNETVTLARE--KSP 115 Query: 119 HFAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 + LVN++LRR + +A P W E G E A++ Sbjct: 116 RASGLVNAVLRRSDRERSSIAWPDRVRDPAGYLALRHSHPRWIVEGWIAQLGFEEAEALA 175 Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAE 220 + +P + L V E + L R ++ +LPGF E Sbjct: 176 EVMAAPPPLTLRVNTLRTSREAYLELLREAGTEAEPTRHSPHGIRILSRTAVPALPGFGE 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G+ VQD S+ + L + VLD CA+PGGK ++ +V A DVS+++L Sbjct: 236 GLVIVQDESSQLASLLLEPRSGERVLDACASPGGKATHLAQIMADKGEVIAWDVSEKKLS 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N RL + DA + FD +LVDAPCS+ G +RR P+ W + DD Sbjct: 296 PIAENARRLGIGIIRPAMADARNPEQNAAPFDRILVDAPCSALGVLRRTPEGKWWKTPDD 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + A Q ++L S +KPGG +++S CS ++E +++ L + L Sbjct: 356 VARLAQSQCRILAGAASLLKPGGTLLYSTCSTTTDENESIIEDFLSRRADFM----LEDL 411 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ ++ G R P GMDGFFA LRR Sbjct: 412 NYLFPGLSECITDRGMFRSWPH--------RHGMDGFFAARLRR 447 >gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter sp. Re1] gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter sp. Re1] Length = 448 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 113/460 (24%), Positives = 197/460 (42%), Gaps = 40/460 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L + ++ LL+ +S +D+ LV +VN ++ L RID Sbjct: 3 NPRELAICMLIKI-QEGSYGNLLLNQHLTS----DMSLKDRALVTELVNGVVQNLLRIDY 57 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + ++ +RV + Q +LD V D+A V+ +V K+ + + A Sbjct: 58 IISQFSKIDLSKISPFVKNAIRVGIYQTFFLDRVPDFAAVNESVSLVKKYEG-KRAANFT 116 Query: 125 NSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N+ILR + I + + ++ P W +R + K + A Sbjct: 117 NAILRNVLRKRDKIVYPNKNINIEKYLSIYYSFPSWLIQRWIELFDKNFTEELCMALNER 176 Query: 176 LYIDLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + V D E +L+A T I L F +G++ Q Sbjct: 177 PKPCIRVNTLVADREELEKQLSAEGARVAPGLFTEETLYILDSPPIAQLESFNKGLFAPQ 236 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ I G +N VLD+ AAPGGKTA + + + ++ A D+ R+ + N Sbjct: 237 DESSIIASLAAGVKSNDKVLDVAAAPGGKTAHMAAIMQNKGEIIAWDIHPHRVRLIEQNC 296 Query: 284 DRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL ++ D + FD V++DAPCS G IRR PD+ W++ +DI Sbjct: 297 RRLKATIVVPEVRNAKIPDKNMFRKFDKVIIDAPCSGLGVIRRKPDIKWSKKPEDITALK 356 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+++L +VKPGG +++S CS++ +++E+ V + L + + Y Sbjct: 357 SEQKEILEVCSKYVKPGGFLIYSTCSIEPEENEKNVDEFLAKNDSFI--YDDLRPYLPEK 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G+I + P++ G DGFF L+R+ Sbjct: 415 LHNSLKQSYGYITLYPNI--------HGTDGFFIARLKRI 446 >gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto BEST195] Length = 447 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 206/463 (44%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R ++ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQDRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S+ Q+ YL+ + D A + AVE AK + ++ Sbjct: 57 IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN +LR + RE + I A + PEW + + YG E I Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P L V A L+ +K L +I F G Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + +VLD CAAPGGK+A + + + VT+LD+ K +++ ++ Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMQNKGSVTSLDLHKHKVKLIKE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DRL L MDA + FD +LVDAPCS G IRR PD+ +T+ DD Sbjct: 295 AADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSA 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +L + VK GG +V+S C++D+ +++EV+ ++ P P S Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDF---EPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +G ++I P G DGFF ++R+ Sbjct: 412 RLPEKVRPFVRDGRLQILPHYF--------GTDGFFICSMRKK 446 >gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 6_1_63FAA] gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 104/466 (22%), Positives = 214/466 (45%), Gaps = 38/466 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +N R + +L + ++ ++ ++ L ++++ + + TL + Sbjct: 1 MVNKVNLRELVLGILLEINKEGQHSHLVIRSTLE--KYQYLEKQERAFLTRVCEGTLEYK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 R+D +LD + + K ++++LR SV Q+LY+D V D AV D AV+ A++ K + Sbjct: 59 LRLDYILDQYSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARK-KGFYN 117 Query: 120 FAKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR+ EK + ++ ++ + +P+W E+ YG E+ + +A Sbjct: 118 LTGFVNGVLRKVARDYSSIHFPEKNQPIEYLSVLYSMPKWLVEKFLAEYGFEKTEKMLEA 177 Query: 172 CISPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGV 222 + + ++ + L+++ + + + +L F G Sbjct: 178 FLKEKPTTIRIRQHLVDKDAVLDSLKRQNVTVEPAPYAENAYYIKNYDYLPALEAFRMGN 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 VQD S+ + ++ V+DLCAAPGGKT + ++ A D+S+ + + + Sbjct: 238 IQVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R N R + + E DA + + D ++ D PCS G I + D+ + I Sbjct: 298 RENAIRQNFLNVVVSEKDATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQTGI 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + QRK+L Q ++VKPGG +++S C+++++++ E V+ + + P +E + Sbjct: 358 AELVNLQRKILEQASTYVKPGGTLIYSTCTINREENIENVRWFVENYPYELESID----D 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + ++ + EG++++ P + DGFF L+R + Sbjct: 414 YLCEELRSDTTKEGYLQLLPGV--------HDCDGFFIARLKRKTE 451 >gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908] gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908] Length = 425 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 203/447 (45%), Gaps = 34/447 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ ++ V+ K ISL+ L + S +D+ L+ + +R LP++D Sbjct: 1 MNLRALAAKVVFQVLEKGISLSVALPEQQKHCE----SGKDKALLAELSYGVMRQLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + L K+ L QLL V Q+ + + +A + E A R + K++ Sbjct: 57 KLISDCMAKPLKGKQRILHQLLLVGCYQLYFTRIPSHAAISETAE-ACRQLKFDGLVKVI 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISP-LYIDLTV 182 N++LR + R++ L + P W + L+ Y I ++ P +++ V Sbjct: 116 NAVLRNIQRQEKPLPTDNDTLTYNTPAWIIKSLKQAYPDSWQTVIENSHQRPPMWLRNNV 175 Query: 183 KFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +++A + L E P+ ++ LPGF +G VQD +A L Sbjct: 176 RSQTRDEYLALLAEAEISASAGQSSDAILLESPKDVMQLPGFEQGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293 + +LD CAAPGGKT + + ++ A+D RLE+++ NLDRL L A Sbjct: 236 LAPADGELILDACAAPGGKTCHILERADTELVAVDFDANRLERVQQNLDRLSLNAKLVHG 295 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q K+L Sbjct: 296 DAADIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELAQLQSKILDHCWK 355 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++KPGG ++++ CS+ Q++ + + L + + I Sbjct: 356 WLKPGGTLLYATCSILPQENAQQISAFLERTHDATLIAISQQPNPDDIGW---------- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP + MDGF+ L + Sbjct: 406 QITPG--------TENMDGFYYARLVK 424 >gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii CIP 102972] Length = 426 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 124/454 (27%), Positives = 206/454 (45%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAAQVLFQVVDKGQSLSMALP-----AAQQNIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ S L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SIANALMDSPLKGKQRVFHHLILVGIYQLSFMRIPPHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179 N++LR R + E + AG P W + L+N Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQDALDTEAMSHNAGKYGHPSWLLKLLQNAYPQQWEAIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + + LN + + P + LPGFA+G VQDA+A + Sbjct: 175 VNHQHHERDAYQALLNHENIDSSVHSQAHDALKLAAPCDVTQLPGFAQGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA G V A+D RL+++ NL RL+L A Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++L Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L + + + Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENVLQVKDFLARTSNA--------------QLVGSEL 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 DNPGRQILPG--------EEDMDGFYYAVLTKQA 426 >gi|13473485|ref|NP_105052.1| hypothetical protein mlr4098 [Mesorhizobium loti MAFF303099] gi|14024234|dbj|BAB50838.1| mlr4098 [Mesorhizobium loti MAFF303099] Length = 462 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 194/424 (45%), Positives = 261/424 (61%), Gaps = 5/424 (1%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ R L L D E G ++ L RD+ LVRAI+ LRF I +L L LP Sbjct: 41 VIDARTPLDGLTDHENGHPQYKALDLRDRGLVRAILVTALRFRMTITGLLARRLEKPLPP 100 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L V+ AQIL+LD+ D A VDLAV AK D + F+ LVN +LR ++R K Sbjct: 101 NATALSHILHVAAAQILFLDIPDSAAVDLAVTHAKSDPRTQRFSGLVNGVLRTLARAKET 160 Query: 138 L-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 +A P+WF +RL+ YG+++ I A +D +V+ D E WA KL + Sbjct: 161 ELPAALAATDEAPKWFSDRLKAAYGEDKAKQILAAHRYEAPVDFSVRADPELWAEKLGGI 220 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 +LPTG +R++ L ++ LPGFAEG WWVQDA+AS+P +LFG + L V DLCAAPGGKT Sbjct: 221 VLPTGTVRVENLAGAVTDLPGFAEGAWWVQDAAASLPARLFGDVGGLRVADLCAAPGGKT 280 Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 AQLI++GAKVTA+D SK RL +L NLDRL L AE + + D Y P +LFDAVL+DAPC Sbjct: 281 AQLILAGAKVTAVDTSKNRLARLAQNLDRLGLSAEIV-QADLLKYEPAELFDAVLLDAPC 339 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 SSTGT+RRHPDV WT+ D+ K A QR+LL + ++ V+PGG +VFSNCSLD + EE+ Sbjct: 340 SSTGTVRRHPDVPWTKTAADVEKLADLQRRLLARAVTLVRPGGRIVFSNCSLDPLEGEEL 399 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 L+ +P +V + + L+ +G +R TP L+ SG+DGFFA Sbjct: 400 HLAFLKETP---VVVDDPLRQGEIAGIDPFLTAQGTLRTTPADLDLGAPERSGLDGFFAA 456 Query: 437 ALRR 440 +RR Sbjct: 457 RMRR 460 >gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5] gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5] Length = 447 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 126/463 (27%), Positives = 206/463 (44%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R ++ L + + + LL + LS +D+ L+ +V TL+ Sbjct: 1 MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQDRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S+ Q+ YL+ + D A + AVE AK + ++ Sbjct: 57 IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN +LR + RE + I A + PEW + + YG E I Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P L V A L+ +K L +I F G Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + +VLD CAAPGGK+A + + + VT+LD+ K +++ ++ Sbjct: 235 IQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DRL L MDA + FD +LVDAPCS G IRR PD+ +T+ DD Sbjct: 295 AADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSA 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +L + VK GG +V+S C++D+ +++EV+ ++ P P S Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDF---EPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +G ++I P G DGFF ++R+ Sbjct: 412 RLPEKVRPFVRDGRLQILPHYF--------GTDGFFICSMRKK 446 >gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B] gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B] Length = 427 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 199/447 (44%), Gaps = 34/447 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ + +SL+ L + L +D+ L+ I +R LP++D Sbjct: 1 MNIRALAAKAIFDVLERGVSLSVALPTQ----QLWLRDGKDKALLAEICYGVMRSLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + L K+ + QLL V Q+ + V +A + E + K+V Sbjct: 57 KLVSGYMQKPLKGKQRVVHQLLLVGAYQLYFTRVPAHAAISETAEGCRA-LGFESLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W RL++ Y + I + P + Sbjct: 116 NGVLRNIQRQVPPLDESNDTLKYNFPAWIIRRLKDAYPETWENIIEASHQRPPMWLRNNR 175 Query: 182 VKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L+ AV P E + LP FA+G VQD +A L Sbjct: 176 RHQSRDAYLQALSDAEVSAVAGPGEDAICLEFATDVARLPHFADGASSVQDGAAQWAASL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDI 293 + VLD CAAPGGK+ L+ + ++ A+D ++RLE++ NL+RL L A Sbjct: 236 LAPRDGELVLDACAAPGGKSCHLLELADIELVAVDFDQKRLERVSQNLERLKLDARVIHG 295 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q+++L Sbjct: 296 DAGDIGSWWQGGKFDRILLDAPCSATGVIRRHPDIKWLRQNNDIAELAKLQQQILDNCWQ 355 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++KPGG ++++ CS+ +++ E ++ L +P N A I Sbjct: 356 WLKPGGTLLYATCSILPEENREQIKAFLERTPDATLETLPNQANNNDIGW---------- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L++ Sbjct: 406 QILPG--------QDDMDGFYYARLKK 424 >gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 450 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 108/465 (23%), Positives = 201/465 (43%), Gaps = 39/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +G+N R + +L + + + S ++ L ++++ + + TL + Sbjct: 1 MTNGINTRELILQILLEIEEEGKHSHIAIRNAL--SKYQFLPRQERAFITRVCEGTLEYR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID ++D S+ + K ++++LR +V QI ++D V D AV + AV+ A+R K Sbjct: 59 ILIDYIIDSYSKVSVDKMKPVIREILRSAVYQIRFMDSVPDSAVCNEAVKLAQR-KGFYS 117 Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR ++RE ++ ++ +PE R YG+E+ I Sbjct: 118 LKPFVNGVLRTIAREWKNLKLPSREENPVRYLSVRYSMPETLVNRWLEDYGEEKTEKILT 177 Query: 171 ACISPLYIDL----TVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEG 221 ++ I + E + ++ + L E I++L F +G Sbjct: 178 DFLTEKPITVRCRTHKYPQKEIYESLVDQGVEVKPAPYLPYAYEISNYNHILALDAFIQG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278 VQD S+ + ++ V+D+CAAPGGK+ + V A D+S+ +++ Sbjct: 238 KIQVQDVSSMLVAEIADPQKGDYVIDMCAAPGGKSLHVADKMGDYGTVDARDISQYKVDM 297 Query: 279 LRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N+ R MD FD + D VL D PCS G I + P++ + Sbjct: 298 IEENIHRTDCINVQAHVMDATVFDVDSELKADVVLADVPCSGYGVIGKKPEIKYRVTAQK 357 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + QR +L +VKPGG++VFS C++ K+++EE + + + P +E + Sbjct: 358 QEEIVILQRTILDNAAEYVKPGGVLVFSTCTIAKEENEENMLWFMNNHPFKLESIDPYLP 417 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + G++++ P + DGFF RR Sbjct: 418 E----ELHSETTALGYLQLLPGV--------HKTDGFFIAKFRRK 450 >gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 446 Score = 271 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 201/465 (43%), Gaps = 47/465 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + ++ R ++ L V + +D LS D+ L+ +V ++R Sbjct: 1 MNT-LSTRQIAFTALREV-HRGAYADIAIDRTLHKFK---LSDHDRRLMTELVYGSVRRQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +DA++D + P++ L+ +L + + Q+ Y + A V+ V+ AK + Sbjct: 56 RSLDAIIDQIADKKSPQQPRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKEN-GFPG 114 Query: 120 FAKLVNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAIS 169 VN LR+ R + + + P W E + G+E + Sbjct: 115 LTGFVNGFLRQYIRLLEKTSDPLILPENLVERLGILYSFPNWVIEVWLSQLGQEETEKLC 174 Query: 170 DACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFA 219 IDL V + L+ + G+RL I +LPGF Sbjct: 175 QWMNQTPTIDLRVNILRASVEMVESVFKKSGILLHRIPHLPQGLRLVGPAGPIQNLPGFT 234 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 EG W +QDA+A + L ++D+CAAPGGKT + + K+ A D + RL Sbjct: 235 EGWWCIQDAAAQLVGHLLDPRPGEVIIDVCAAPGGKTTHIAELMGDNGKIYACDRTPSRL 294 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 KL N RL L + +I D+ ++ D VL+DAPCS GT+ RH D W ++ Sbjct: 295 RKLSENAQRLRLQSIEIFPGDSRNFTKFHHLADRVLLDAPCSGLGTMHRHADARWRQNLS 354 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A QR+L+ +FVKPGG++V++ C+L Q++EE++++ L +P P Sbjct: 355 SVGDLAHIQRELISHTANFVKPGGVLVYATCTLHPQENEELIREFLHVNPQWEMEKPNLD 414 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +S GW+++ P MDGFF V LR+ Sbjct: 415 FL--------DVSSPGWLKLWPH--------QQNMDGFFLVRLRK 443 >gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224493258|sp|B5F7R5|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 429 Score = 271 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 208/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + PGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLNPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|319404848|emb|CBI78449.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498] Length = 456 Score = 271 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 194/445 (43%), Positives = 260/445 (58%), Gaps = 11/445 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ KR SL L D EYG + LS RD++L RAI+ LR + Sbjct: 16 PGLAVRQVCVRLLGAVLDKRTSLAGLTDNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQ 75 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L L+ LP + +SL LL +S+ QILYLD+ D+A +DLAV AK D F+ Sbjct: 76 ITVALSRFLVRPLPAQAFSLHHLLHISITQILYLDIPDHAAIDLAVRVAKIDPRMPRFSG 135 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN+ILR +RE L + I IP WF + L + YG E+ I +DLTV Sbjct: 136 LVNAILRNFAREAPILRMQTPTIKAIPMWFGQLLVSTYGAEKADQILAIQSITPPLDLTV 195 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L ++LP G +RL S+ LPG+AEG WWVQD +A++P +L G + Sbjct: 196 KSDSAGWAKRLGGIVLPNGSVRLISSAYSVADLPGYAEGAWWVQDVAAALPARLLGNVCG 255 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL + GA VTALD+S RL++LR N+DRL+ D + Sbjct: 256 KKVADLCASPGGKTAQLALQGADVTALDISANRLKRLRENMDRLNFS-VHYWLGDLRQFH 314 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P +LFDAVL+D PCSSTGTIRRHPD+LWT+ DD+ K A Q LLL I VK G +V Sbjct: 315 PDQLFDAVLLDTPCSSTGTIRRHPDILWTKTMDDVTKLAEVQYDLLLAAIDLVKKNGCIV 374 Query: 363 FSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 FSNCSL +++ E++V+K+L + L P+ + + MA +S EG++R P Sbjct: 375 FSNCSLAREEGEDLVKKILAIRH--DIVLEPILAE--EMGAMAHLISMEGFLRTIPSDCC 430 Query: 422 KIDGVSS-----GMDGFFAVALRRL 441 + + GMDGFFA R++ Sbjct: 431 YENFNTEEKLFLGMDGFFAARFRKV 455 >gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 429 Score = 271 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 210/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V N +LDLCAAPGGKT ++ A V A+DV ++RL ++ NL RL Sbjct: 235 AQKCVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEADVLAVDVDEQRLSRIYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCDEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + L+ +P ++ Sbjct: 354 AEILDTVWPRLKPGGTLVYATCSVLPEENSAQINAFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A EG DGFF L + Sbjct: 414 GA--EEG-------------------DGFFYAKLIKK 429 >gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus fusiformis ZC1] gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus fusiformis ZC1] Length = 453 Score = 271 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 126/460 (27%), Positives = 200/460 (43%), Gaps = 42/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L V + + LL+ + +D+ L+ I TL++ +D Sbjct: 12 NVRDAALSILLAVDKNQAYSNLLLNETIKRHK---IEAKDRALLTEITYGTLQYKMTLDY 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ + SS+ + ++ LLR+S+ QI YL + +A V+ AVE AKR + +R A +V Sbjct: 69 YLEPFIRSSI---DHWVRWLLRISLYQIHYLTRIPPHAAVNEAVEIAKR-RGHRGIASMV 124 Query: 125 NSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR V R + IA + P W +R + YG E + P Sbjct: 125 NGILRSVLRSGVPSTDDIADPIERLSIETSHPMWLVQRFVDNYGLEVATEMLHENNRPPV 184 Query: 178 IDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V T A L A+ L F EG+ +QD S Sbjct: 185 QTVRVNTTKATVKQAIAELEAEGLTAIQSDVIPECLYITNGQPARTKAFKEGMITIQDES 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 + IP + + VLD+CAAPGGKT + + + + A D+ +L+ + N +RL Sbjct: 245 SMIPANVLNPSPGMRVLDMCAAPGGKTTHIAEIMQNEGSILATDLHPHKLDLIDHNTERL 304 Query: 287 HLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + +D FDA+LVDAPCS G +RR PD+ +T+ +D+ Sbjct: 305 GLDIVETAPIDGRKAPEFLQAASFDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQKI 364 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q LL +K G +V+S C++D Q++E V+ L + P +E + L S K + Sbjct: 365 QLALLDAATKVLKTDGKLVYSTCTVDIQENEGTVKAFLTAHP-EMEAIQLESLPTKLAEK 423 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G +++ P G DGFF A R+ + Sbjct: 424 Q----ANGMLQVFPQDF--------GSDGFFVAAFRKKGE 451 >gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium rectale M104/1] Length = 469 Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 103/453 (22%), Positives = 197/453 (43%), Gaps = 40/453 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 ++ R ++ +L + + +L ++ LS++D+ + +V+ T+ ++ ++ Sbjct: 38 SVDTRELALEMLIEINERGAFSHIVLRSVL--DKYQYLSKQDRAFMTRLVDGTIEYMLQL 95 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++D + + + K ++ LLR+SV QI Y+D V D AV + AV+ AKR K + + Sbjct: 96 DYIIDSFSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQ-LSG 154 Query: 123 LVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 VN +LR ++R + + +P+W +R YG+++ I A S I + Sbjct: 155 FVNGVLRNIARNIDSVQFDTLSIRYSMPQWIVDRFVAEYGEKKAEEIFKAFHSKSTISIR 214 Query: 182 VKFDI---ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L A + + + + L F +G+++VQD S+ + Sbjct: 215 TNLTRCTPDELRAMLEAEGVIVTPVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSML 274 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 Q V+D+CAAPGGK+ + V A D++ ++ + N+DR L Sbjct: 275 VAQTAAPKKGDYVIDVCAAPGGKSTHIAELLKGSGHVLARDLTDTKVGMIEENIDRHGLN 334 Query: 290 AEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 DA + D ++ D PCS G + R D+ + + + + A QR++ Sbjct: 335 NMSAEVWDATVPDADSAEKADILICDLPCSGLGVLGRKKDIRYKMTPESVDELAALQRQI 394 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++VKP G++V+S C++D+ ++E+ V+ + P + Sbjct: 395 LDTVHTYVKPNGVLVYSTCTIDEAENEDNVRWFIEKHPEFELDMSFAEGT---------- 444 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +I P G DGFF + Sbjct: 445 ---GMKQILPG--------EHGSDGFFIARFIK 466 >gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus sphaericus C3-41] gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus sphaericus C3-41] Length = 453 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 195/460 (42%), Gaps = 42/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L V + + LL+ + +D+ L+ + TL+ +D Sbjct: 12 NVRDAALSILLAVDKNQAYSNLLLNETIKRHK---IEAKDRALLTELTYGTLQHKMTLDY 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ + S+ + ++ LLR+S+ Q+ YL + +A V+ AVE AKR + +R A V Sbjct: 69 YLEPFIRGSI---DHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKR-RGHRGIASTV 124 Query: 125 NSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + ++R+A + P W +R N YG E + P Sbjct: 125 NGILRSVLRQGVPSINDIENPIERLAIETSHPIWLVQRFVNNYGLEVATGMLHENNVPPI 184 Query: 178 IDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V T L A L F EG +QD S Sbjct: 185 QTVRVNTTKVTVEQAMAELEEEGLTAKQSDVIPECLHVTNGQPARTNAFKEGHITIQDES 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + IP + + VLD+CAAPGGKT ++ + + A D+ +L+ + N +RL Sbjct: 245 SMIPANVLKPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILATDLHPHKLDLIDHNTERL 304 Query: 287 HLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + +D +DA+LVDAPCS G +RR PD+ +T+ +D+ Sbjct: 305 GLDIIETAPIDGRKAPEFLQAESYDAILVDAPCSGLGVMRRKPDIKYTKREEDLENLQTI 364 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q LL +K G +V+S C++DKQ++E V L + P +E + L S K + Sbjct: 365 QLALLDAATKVLKIKGKLVYSTCTVDKQENEGTVNAFLAAHP-EMEAIQLESLPTKLAEK 423 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G +++ P G DGFF A R+ + Sbjct: 424 Q----ANGMLQVFPQDF--------GSDGFFVAAFRKKGE 451 >gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894] gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894] Length = 429 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 210/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L +S +D+ L++ + LR L Sbjct: 1 MKKSINLRSLAAQAIEQVVEKGQSLSTVLP-----PLQHKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + F Sbjct: 56 SQLEWLINKLMSRPMTGKQRTIHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRMQ-F 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPL 176 L+N +LR+ R++ E + P W R + + +E + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQDELLAEFSGQDARWLHPMWLLNRFQTAWPREWQAVVEANNERPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGF +G VQDAS Sbjct: 175 WLRVNRQHHSRDEWLKLLEENGMTGHIHPRYPDAVRLDAPAPVSALPGFEQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V+L N ++LDLCAAPGGKT ++ A V A+DV +R+ ++ NL RL Sbjct: 235 AQGCVELLAPQNGETILDLCAAPGGKTTHILEAAPQASVMAVDVDAQRISRVYENLKRLK 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A D+ D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKA-DVKVGDGRFPSTWCGETQFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG ++++ CS+ +++ E ++ L +P Sbjct: 354 SEILDAIWPHLKPGGTLLYATCSVLPEENSEQIRAFLSRTPDAQLD-------------G 400 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I+ P E DGFF L + Sbjct: 401 TGSTQTPGIQNLPGATEG--------DGFFYAKLIKK 429 >gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885] gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885] Length = 511 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 103/443 (23%), Positives = 167/443 (37%), Gaps = 38/443 (8%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 + L +A L R++ L + R +D L R ++ Sbjct: 81 YVDHALARILDRAA---LPARERALATELAYGVARRQGTLDWALSRFSRKPPARLDPPVR 137 Query: 84 QLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-- 140 LR+ Q+ YLD + +A VD +V +R + A VN++LR +R + Sbjct: 138 AALRLGAYQLWYLDRIPAHAAVDESVNLVRRH-GPAYAAGFVNAVLRAAARHGFPQGEVP 196 Query: 141 --------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET---- 188 +A + P W ER G E + +A + V Sbjct: 197 PRERDLAGHLALVHAHPRWLVERWLGRLGPEEAERLLEANNRVPPLSARVNRLRADPRAL 256 Query: 189 -----WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L F EG QD S+ + V + Sbjct: 257 AAALAARGVAVEAGRFLPEALRLGHGVHPAELDAFQEGALTWQDESSMLAVHVLDPRPGD 316 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPGGK+ + +V A D RLEK+ RL L + + +D Sbjct: 317 LVVDVAAAPGGKSTHIAERMGDRGRVVACDADPGRLEKVGEAARRLGLGCIEPLALDGRK 376 Query: 301 YCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + D VL D PCS G + R PD+ W + DD+ A Q +LL + +KPG Sbjct: 377 LPERLAGQADRVLADVPCSGLGVLARRPDLRWRKTPDDLAALAELQGELLRAAAACLKPG 436 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+ + +++++VV+ L + L ++ + +GWI++ P Sbjct: 437 GVLVYSTCTTEPEENQQVVEGFLAQAGGAFTADDLRPWLPAALRDEPG-TAQGWIQLWPH 495 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 G+DGFF LRR+ Sbjct: 496 --------RHGVDGFFIARLRRV 510 >gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium rectale DSM 17629] Length = 469 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 101/453 (22%), Positives = 196/453 (43%), Gaps = 40/453 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 ++ R ++ +L + + +L ++ LS++D+ + +V+ T+ ++ ++ Sbjct: 38 SVDTRELALEMLIEINERGAFSHIVLRSVL--DKYQYLSKQDRAFMTRLVDGTIEYMLQL 95 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++D + + + K ++ LLR+SV QI Y+D V D AV + AV+ AKR K + + Sbjct: 96 DYIIDSFSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQ-LSG 154 Query: 123 LVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 VN +LR ++R + + +P+W +R YG+++ I A + I + Sbjct: 155 FVNGVLRNIARNIDSVQFDTLSIRYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIR 214 Query: 182 VKFDI---ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L A + + + + L F +G+++VQD S+ + Sbjct: 215 TNLTRCTPDELRATLEAEGVTVTAVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSML 274 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 Q V+D+CAAPGGK+ + V A D++ +++ + N+DR L Sbjct: 275 VAQTAAPKKGDYVIDVCAAPGGKSTHIAELLRGSGHVFARDLTDNKVDMIEENIDRHGLN 334 Query: 290 AEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 DA + D ++ D PCS G + R D+ + + + + QR++ Sbjct: 335 NMSAEVWDATVFDADSAGKADILICDLPCSGLGVLGRKKDIRYKMTPESVDELVVLQRQI 394 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++VKP G++V+S C++D+ ++E+ V+ + P Sbjct: 395 LDTVHTYVKPNGVLVYSTCTIDEAENEDNVRWFIEKHPEFELDKSFAEGT---------- 444 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +I P G DGFF + Sbjct: 445 ---GMKQILPG--------EHGSDGFFIARFIK 466 >gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa NIES-843] gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa NIES-843] Length = 450 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 114/459 (24%), Positives = 197/459 (42%), Gaps = 41/459 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR ++ +L + R LD S+ L D L IV +R +DA Sbjct: 3 NARQLALLILRDIDRSSAYPDRALDRHLSASSLNCL---DTALTTEIVYGIIRRQRTLDA 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 +LD + + ++ L+++L + + Q+ YL + A V+ AVE K + A +V Sbjct: 60 LLDRLGKKTAAQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKISHLGK-LAAVV 118 Query: 125 NSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 N +LR+ R R+ + P+W + + + + Sbjct: 119 NGMLRQYLRLTANGDDPLLLPENTASRLGILHSFPDWLVQLWLDRFSVTETEQLCQWFNR 178 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWV 225 +D+ + E ++L + + RL +I L GF G + + Sbjct: 179 SPDLDIRINPLKTSREALENELESANITFHHLKLPLACRLTSGLGNIERLEGFRAGNYTL 238 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD SA + L +++D CAAPGGKT + + ++ A D + RL +L N Sbjct: 239 QDISAQLVTYLLDPQPGETIIDACAAPGGKTTHIAELMGDRGRILACDQTASRLRQLEAN 298 Query: 283 LDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + RL L A +I D+ D + D VL+DAPCS GT+ + PD+ W + +++ A Sbjct: 299 IKRLDLKAIEIHLGDSRDRPQWHGIADRVLIDAPCSGLGTLHKRPDIRWRQTPENLPVLA 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL ++VKP GI+V++ C+LD ++E V+++ L + P P +++ Sbjct: 359 KRQGELLASAATWVKPKGILVYATCTLDPLENERVIEQFLAAHPDWKMATPDSNSCV--- 415 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G I + P DGFF L + Sbjct: 416 --SEYYTETGAIEVLPH--------RHNQDGFFMAKLVK 444 >gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656] gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656] Length = 469 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 101/453 (22%), Positives = 195/453 (43%), Gaps = 40/453 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 ++ R ++ +L + + +L ++ LS++D+ + +V+ T+ ++ ++ Sbjct: 38 SVDTRELALEMLIEINERGAFSHIVLRSVL--DKYQYLSKQDRAFMTRLVDGTIEYMLQL 95 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++D + + + K ++ LLR+SV QI Y+D V D AV + AV+ AKR K + + Sbjct: 96 DYIIDSFSKTKVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKFAQ-LSG 154 Query: 123 LVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 VN +LR ++R + + +P+W +R YG+++ I A + I + Sbjct: 155 FVNGVLRNIARNIDSVQFDTLSIRYSMPQWIVDRFVAAYGEKKAEEIFKAFHNKSTISIR 214 Query: 182 VKFDI---ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L A + + + + L F +G+++VQD S+ + Sbjct: 215 TNLTRCTPDELRATLEAEGVTVTAVDELNYAFVISGFDYLNGLQSFRDGLFYVQDISSML 274 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 Q V+D+CAAPGGK+ + V A D++ +++ + N+DR L Sbjct: 275 VAQTAAPKKGDYVIDVCAAPGGKSTHIAELLQGSGHVFARDLTDNKVDMIEENIDRHGLN 334 Query: 290 AEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 DA + D ++ D PCS G + R D+ + + + QR++ Sbjct: 335 NMSAEVWDATVFDADSAGKADILICDLPCSGLGVLGRKKDIRYKMTPGSVDELVVLQRQI 394 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++VKP G++V+S C++D+ ++E+ V+ + P Sbjct: 395 LDTVHTYVKPNGVLVYSTCTIDEAENEDNVRWFIEKHPEFELDKSFAEGT---------- 444 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +I P G DGFF + Sbjct: 445 ---GMKQILPG--------EHGSDGFFIARFIK 466 >gi|331088259|ref|ZP_08337178.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 3_1_46FAA] gi|330408503|gb|EGG87969.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 3_1_46FAA] Length = 456 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 106/468 (22%), Positives = 193/468 (41%), Gaps = 41/468 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + + +L V +L + ++ L +R++ + + TL + Sbjct: 1 MAKAINEREIVAAILMEVTENGRYSHIVLREVL--TKYQYLEKRERAFITRVTEGTLEHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +LD + + K ++ +LR +V QI Y+D + D+AV +V+ A + K Sbjct: 59 TEIDYILDCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVK-KGFSG 117 Query: 120 FAKLVNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR + ++R++ PEW + Y + + Sbjct: 118 LRGYVNGVLRSVVKGIDEVEYPSDPIKRLSVRYSCPEWIIRLWKETYDLSLIETMLKDFQ 177 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224 + + E +L + L + + SL F EG++ Sbjct: 178 TEKPTTIRCCRSRITTEQLKKRLEEEHVLVENHPYLKDALLISKYDYLESLETFREGLFV 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGK---------TAQLIVSGAKVTALDVSKRR 275 VQD S+ + +L V+DLCAAPGGK V A D+++ + Sbjct: 238 VQDISSMLVGELAHVQAGAQVIDLCAAPGGKALDVAERILMEGQAGCSGHVEARDLTEYK 297 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + + N++R+ L + DA Y K D V+ D PCS G + + D+ + Sbjct: 298 VSLIEENIERMGLCNVTAVCQDASVYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKAS 357 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + IV QRK+L S+VKPGG +++S C+++ +++ E V L+ P E Sbjct: 358 PEGIVSLVKLQRKILSCAASYVKPGGELLYSTCTVNPKENIENVHWFLKEFP---EFYAD 414 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ +++ G I++ P + DGFF LR+ Sbjct: 415 DIREDLCLELRESVTENGCIQLLPGV--------HKSDGFFIARLRKK 454 >gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia albertii TW07627] gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia albertii TW07627] Length = 429 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 211/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMTRPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176 L+N +LR+ R++ E + P W +RL+ Y ++ + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPM 174 Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + ++W L + +P + +LPGF EG VQDAS Sbjct: 175 WLRVNRTHNSRDSWLALLEKAGMKGFLHANYPDAVRLEIPAPVHALPGFDEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVMAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRSPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +K GG +V++ CS+ +++ + ++ L+ + + Sbjct: 354 SEILDAIWPHLKSGGTLVYATCSILPEENSQQIKAFLQRTEDAMLCETGTPEQPG----- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + DGFF L + Sbjct: 409 ----------------KQNLPDAEEGDGFFYAKLIKK 429 >gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218] Length = 426 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 124/454 (27%), Positives = 206/454 (45%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAAQVLFQVVDKGQSLSMALP-----AAQQNIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ S L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SIANALMDSPLKGKQRVFHHLILVGIYQLSFMRIPPHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179 N++LR R + E + AG P W + L+N Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQDALDAEAMSHNAGKYGHPSWLLKLLQNAYPQQWEAIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + + LN + + P + LPGFA+G VQDA+A + Sbjct: 175 VNHQHHERDAYQALLNHENIDSSVHSQARDALKLAAPCDVTQLPGFAQGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA G V A+D RL+++ NL RL+L A Sbjct: 235 ALHYLQPQDGELILDCCAAPGGKTAHILERTHGCDVVAIDCDDTRLKRVHDNLKRLNLSA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++L Sbjct: 295 KVVCGDARYPEQWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L + + + Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENVLQVKDFLARTSNA--------------QLVGSEL 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 DNPGRQILPG--------EEDMDGFYYAVLTKQA 426 >gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522] gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522] Length = 449 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 114/458 (24%), Positives = 208/458 (45%), Gaps = 36/458 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK G N R + +L + +++ LL+ S L+Q+D L+ +V T+++ Sbjct: 1 MKQG-NVRDTAVEVLLKIEKQQAYSHLLLNETIKKS---NLNQKDVPLLTELVYGTIQYQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + + LLR+++ Q++YLD + D A V AV+ AK+ + ++ Sbjct: 57 KLLDFYLKPFSKRPLEKLEPWVLVLLRLTLYQMVYLDRIPDRAAVHEAVQIAKK-RGHQG 115 Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + +VN ILR + R + + ++R+A + PEW +R + YG ++ ++ A Sbjct: 116 ISGMVNGILRSIQRNELPQLDTVKDPVERLALKTSHPEWLIKRWIDQYGIDKTEEMALAN 175 Query: 173 ISPLYIDLTVK---FDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 ++ + V +E L A + S+++ F +G Sbjct: 176 LTHPTHSVRVNELNASVEEVIAALKNEGIEAEQSKNIPESVLIYKGSVINTKPFVDGWIT 235 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 VQD + + N VLD CAAPGGK+ + + ++ +LD+ K ++ + Sbjct: 236 VQDEGSMLVAHALSPKENERVLDACAAPGGKSTHIAEKMKNSGQIVSLDIHKHKVGLIEK 295 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N RL+L + ++DA + FD +LVDAPCS G I+R PD+ W+++ DI Sbjct: 296 NAKRLNLSIINTEQLDARQVSGQFEEHSFDRILVDAPCSGLGVIQRKPDLKWSKNEGDIN 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q ++L +K GG +V+S C++DK+++ EV+ + ++ + Sbjct: 356 RLAQIQTEILEAVWPLLKKGGTLVYSTCTVDKEENNEVITQFVQK-KENAQFDDQLMDRL 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 G I++ P DGFF Sbjct: 415 PKAFHDCKGKGNGMIQLFPG--------EQSTDGFFIS 444 >gi|253991652|ref|YP_003043008.1| 16S rRNA methyltransferase B [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783102|emb|CAQ86267.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus asymbiotica] Length = 429 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 114/454 (25%), Positives = 209/454 (46%), Gaps = 40/454 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ ++ V+ + SL+ +L + ++ +D+ L++ LR L Sbjct: 1 MKNTYNLRSIAAKAITQVLDQGQSLSTVLPKL-----QQNITDKDKSLLQEFSFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE--QAKRDKENR 118 P+++ ++ ++ L K+ ++ LL V + Q+ Y + +A + V + + + Sbjct: 56 PQLEWIIIQLMAKPLKGKQRTIHYLLMVGIYQLAYTRIPAHAALAETVNGVVTLKYPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177 V +R + IE Q + + PEW R++ Y +E I+ + P++ Sbjct: 116 GLINGVLRQFQRQQLQLIEHSQSHSSYHLHPEWLSTRIQKAYPQEWQQLINVNNQKPPMW 175 Query: 178 IDLT-VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + + + L+ + P + LPGF +G VQD SA Sbjct: 176 LRVNRIYHSRDEYLTLLHKAGIDAEPAIELPFAIRVISPCPVAILPGFDKGWVTVQDVSA 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 +L +N +LDLCAAPGGKT I ++V A+D+ +RL+++ NL RL+ Sbjct: 236 QGCAELLQPINGEKILDLCAAPGGKTTHLLEIAPESQVLAVDIDGQRLKRVEENLRRLNC 295 Query: 289 YA-EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 +A I + +Y + FD +L+DAPCS+TG IRRHPD+ W R +DI + Q + Sbjct: 296 HATVKIGDGRYPEYWAENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 ++ ++K GG +V++ CS+ ++ + + L+ P A D A Sbjct: 356 IIDAIWPYLKKGGTLVYATCSILPDENSQQINAFLKRHPD---------AELSGPDTREA 406 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P++ G DGFF L + Sbjct: 407 PGK----QIIPELT--------GGDGFFYARLIK 428 >gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|46396982|sp|Q8Z1X1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 429 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|304320686|ref|YP_003854329.1| tRNA and rRNA cytosine-C5-methylase-like protein [Parvularcula bermudensis HTCC2503] gi|303299588|gb|ADM09187.1| tRNA and rRNA cytosine-C5-methylase-like protein [Parvularcula bermudensis HTCC2503] Length = 455 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 143/439 (32%), Positives = 224/439 (51%), Gaps = 12/439 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR + +L + R+ +L + AF L D+ R ++ LR Sbjct: 26 PGLPARRAALDILLAI-RRGQALDMAMAE---SEAFEDLEGADRGFARTLIMAVLRRQNT 81 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D L L + ++ LLR++ AQIL L V +A V+ AK +++ FAK Sbjct: 82 LDEAYGTFLDRPLKSTQGTVITLLRLAAAQILLLGVPPHAATATTVDLAKERRDSAGFAK 141 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 L+N++ RR+ + L++ + +P W RLE YG + ++ A + +DLT Sbjct: 142 LLNALCRRMVEKGPSLIEDYPPRTDVPGWLWRRLERHYGAKTARRLAAAFVQEPALDLTP 201 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKE-LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 K E P G + L+ I LPG+ EG WW+QD +A++P+ L G L Sbjct: 202 KDPKERERLATALEAHPLGPVSLRRTAGGRIEDLPGYTEGDWWIQDLAAALPISLLGDLT 261 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V DLCAAPGGKTAQL +GA VTA+D+S +RL +L NL RL L A D D + Sbjct: 262 GQRVYDLCAAPGGKTAQLAAAGAHVTAVDISAKRLRRLEDNLARLGLRA-DTFVGDVLGF 320 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P + D V++DAPC++TGT+RRHPD+LW++ +D+ + + Q ++L V+PGG + Sbjct: 321 SPDEPADLVVLDAPCTATGTVRRHPDLLWSKKEEDVAELSALQDQMLHHAARLVRPGGRL 380 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 +F CSL ++ E+ + L PL+ + + + + +G +R PD++ Sbjct: 381 MFITCSLLAEEGEDRSRAFLSRH-SQFTAEPLSDDEKERLG-PLNAAKDGHLRTRPDLIA 438 Query: 422 KIDGVSSGMDGFFAVALRR 440 GMDGF+A R Sbjct: 439 DA----GGMDGFYAARFTR 453 >gi|317501927|ref|ZP_07960111.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316896607|gb|EFV18694.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 456 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 108/468 (23%), Positives = 192/468 (41%), Gaps = 41/468 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + + +L V +L + ++ L +R++ + + TL + Sbjct: 1 MAKAINEREIVAAILMEVTENGRYSHIVLREVL--TKYQYLEKRERAFITRVTEGTLEHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +LD + + K ++ +LR +V QI Y+D + D+AV +V+ A + K Sbjct: 59 TEIDYILDCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVK-KGFSG 117 Query: 120 FAKLVNSILRRVSREKIELLQRIAG------ISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR V +E E+ PEW + Y + + Sbjct: 118 LRGYVNGVLRSVVKEIDEVEYPSDPIKRLSVRYSCPEWIIRLWKETYDLSLIETMLKDFQ 177 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224 + + E +L + L + + SL F EG++ Sbjct: 178 TEKPTTIRRCRSRITMEQLKKRLEEEHVLVENHPYLKDALLISKYDYLESLETFREGLFV 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGK---------TAQLIVSGAKVTALDVSKRR 275 VQD S+ + +L V+DLCAAPGGK V A D+++ + Sbjct: 238 VQDISSMLVGELAHVQAGAQVIDLCAAPGGKALDVAERILMEGQAGCSGHVEARDLTEYK 297 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + + N++R+ L + DA Y K D V+ D PCS G + + D+ + Sbjct: 298 VSLIEENIERMGLCNVTAVCQDASVYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKAS 357 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + IV QRK+L S+VKPGG +++S C+++ +++ E V L+ P E Sbjct: 358 PEGIVSLVKLQRKILSCAASYVKPGGELLYSTCTVNPKENIENVHWFLKEFP---EFYAD 414 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ +++ G I++ P + DGFF LR+ Sbjct: 415 DIREDLCLELRESVTENGCIQLLPGV--------HKSDGFFIARLRKK 454 >gi|153815686|ref|ZP_01968354.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756] gi|145846927|gb|EDK23845.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756] Length = 456 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 106/468 (22%), Positives = 193/468 (41%), Gaps = 41/468 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + + +L V +L + ++ L +R++ + + TL + Sbjct: 1 MAKAINEREIVAAILMEVTENGRYSHIVLREVL--TKYQYLEKRERAFITRVTEGTLEHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +LD + + K ++ +LR +V QI Y+D + D+AV +V+ A + K Sbjct: 59 TEIDYILDCFSKVKVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVK-KGFSG 117 Query: 120 FAKLVNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR + ++R++ PEW + Y + + Sbjct: 118 LRGYVNGVLRSVVKGIDEVEYPSDPIKRLSVRYSCPEWIIRLWKETYDLSLIETMLKDFQ 177 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224 + + E +L + L + + SL F EG++ Sbjct: 178 TEKPTTIRRCRSRITMEQLKKRLEEEHVLVENHPYLKDALLISKYDYLESLETFREGLFV 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGK---------TAQLIVSGAKVTALDVSKRR 275 VQD S+ + +L V+DLCAAPGGK V A D+++ + Sbjct: 238 VQDISSMLVGELAHVQAGAQVIDLCAAPGGKALDVAERILMEGQAGCSGHVEARDLTEYK 297 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + + N++R+ L + DA Y K D V+ D PCS G + + D+ + Sbjct: 298 VSLIEENIERMGLCNVTAVCQDASVYDEKSAGKADIVIADLPCSGLGVLGKKTDLKYKAS 357 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + IV QRK+L S+VKPGG +++S C+++ +++ E V L+ P E Sbjct: 358 PEGIVSLVKLQRKILSCAASYVKPGGELLYSTCTVNPKENIENVHWFLKEFP---EFYAD 414 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ +++ G I++ P + DGFF LR+ Sbjct: 415 DIREDLCLELRESVTENGCIQLLPGV--------HKSDGFFIARLRKK 454 >gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427] gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427] Length = 445 Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 106/464 (22%), Positives = 208/464 (44%), Gaps = 45/464 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M R LL + ++ +L D + +D+ V +V TL++ Sbjct: 1 MNKT--VREQIVDLLIEIEKEASYAQLVLKRALQD-----IDAKDKGFVTEVVYGTLKYQ 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D +L+ + + R K ++ ++R+S+ Q+LYLD V A+++ AV+ K+ ++ ++ Sbjct: 54 IKLDYILNQFSKTPVHRMKPLIRNVMRMSLYQMLYLDKVPTSAIINEAVKIVKK-RKFQN 112 Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170 + VN +LR + R++ +++ ++ IPEW E Y +E V +I + Sbjct: 113 LSGFVNGLLRNIDRQREQIIYPDETKNLVLAMSIHYAIPEWMIEEWLKVYKEEEVKSICE 172 Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221 A + + +++ + P F +G Sbjct: 173 ALNERAEVCARYNTLKTNKLEFEETLKVEGIQLKEGAFLEEAFYLKGVDNLQNSPSFKKG 232 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQD SA + + +LD+C+APGGK+ + + + ++ + D+ +LE Sbjct: 233 EWTVQDESAMLVAHVMAPQKGDCILDMCSAPGGKSIHMAELMENAGRIVSCDIHPHKLEL 292 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 ++ N +R+ + + D + FD VL+DAPCS G ++R PD+ + + Sbjct: 293 IKKNAERMGITIIEPTLQDGTLKNECYVEAFDKVLLDAPCSGLGIMKRKPDIRTHKSKEG 352 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 +++ Q+KL L IS++KPGG +V+S C++ +++E +V + + L N Sbjct: 353 LLEIVALQKKLALAAISYLKPGGRLVYSTCTISHEENEGMVSYI-----KALGLELENIV 407 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A+ +G I+I P M G DGFF + ++ Sbjct: 408 DTIPSPLKRAIKEKGMIQILPHMA--------GTDGFFIASFKK 443 >gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536] gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536] Length = 429 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCA PGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4] gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4] Length = 427 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 206/452 (45%), Gaps = 38/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ ++ V+ K +SL+ L + RL S +D+ L+ + +R L Sbjct: 1 MK---NLRALAARVVFQVLEKGVSLSVALPEQ----QQRLTSGKDKALLAELCYGVMRHL 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P++D ++ + L K+ + QLL V Q+ + + +A + E A R + Sbjct: 54 PQLDKLVSDCMSKPLKGKQRIVHQLLLVGCYQLYFTRIPGHAAISETAE-ACRQLKFEGL 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYI- 178 K+VN +LR + R + L + ++ P W +RL+ Y I+ + P Sbjct: 113 VKVVNGVLRNLQRNQKPLPEDNETLAFNTPAWLIKRLKAAYPDSWQEMIAQSHQRPPMWL 172 Query: 179 -DLTVKFDIETWA-----HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + E + ++ A + L E P+ + LPGFA+GV VQD +A Sbjct: 173 RNNQLSQTREQYLTLLDEQEIAATPGASNDAILLESPKDVGMLPGFADGVASVQDGAAQW 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N +LD CAAPGGK+ + A+D +RLE+++ NLDRL L A Sbjct: 233 AASLLAPEANELILDACAAPGGKSCHLLESQPSIDLVAVDFDAKRLERVQQNLDRLSLKA 292 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 293 KLVHGDAAKIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKQADIEELATLQSQIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++KPGG ++++ CS+ Q++ E + L + L+P+ S Sbjct: 353 DHCWQWLKPGGTLLYATCSILPQENAEQIAAFLART-QDATLIPI---------AQQQNS 402 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +ITP MDGF+ L + Sbjct: 403 DDIGWQITPG--------QDNMDGFYYARLVK 426 >gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18] gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18] Length = 479 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 114/464 (24%), Positives = 189/464 (40%), Gaps = 42/464 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S N R + +L + +++ L+D E + D+ L+ +V LR Sbjct: 32 SSKNPRRAAFDILLRIEKEKSFADILIDHELSKDM---IKGADRGLLTELVYGVLRRQGT 88 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D ++ + + + LLR+ + Q +LD V A V+ V+ AK + Sbjct: 89 LDHIIGQFSKQRTDKLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKE--LAPRAS 146 Query: 122 KLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDAC 172 +N+ILR R + + A P W + G E A++ A Sbjct: 147 GFINAILRNADRNRDNISYPDRAENPVGYLAVRYSHPAWLTSQWCEQLGVEGAEALAAAM 206 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVW 223 P + V E +L + R I LP F +G++ Sbjct: 207 SEPPPFTIRVNTLRISREALMARLAEEGISCSETRWSPDGIRLNQSGQITRLPSFRDGLF 266 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD S+ + VLD C+APGGKT Q+ + + ++ A DV+ ++L ++ Sbjct: 267 TVQDESSQLAPLFLSPEKGDRVLDACSAPGGKTTQIAQLMGNSGEIYACDVNHKKLRLIK 326 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 DRL + + MDA P F +LVDAPCS G IRR+P+ W++ DD+ Sbjct: 327 ETCDRLGITSVRTFTMDATSPSPAIKEVTFQRILVDAPCSGLGVIRRNPEGKWSKSPDDL 386 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 ++ A Q +L ++ G ++++ CS Q++E V+ LR P V Sbjct: 387 LQQARTQVTILENLCKYLDKSGTLLYATCSTSVQENEYVIDTFLREHPEFV----AEDLR 442 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A + G+ R P GMDGFFA L+++ Sbjct: 443 TLFPEFAPLFTERGFFRSWPH--------RDGMDGFFAARLKKI 478 >gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4] gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4] Length = 426 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 122/448 (27%), Positives = 201/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ ++ V+ K ISL+ L ++ S +D+ L+ + +R LP++D Sbjct: 1 MNLRALAAKVVFQVLEKGISLSVALPVQQKHLD----SGKDKALLAELCYGVMRHLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + + K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 57 KQVSDCMSKQMKGKQRIVHQLLLVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ L + P W +RL+ Y I + P + Sbjct: 116 NGVLRNIQRQEKPLSTDNDTLAYNTPAWIIKRLQAAYPDNWQTVIEQSHERPPMWLRNNQ 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 ET+ L A + L P ++ LPGF G VQD +A L Sbjct: 176 QSQTRETYLQALAGLDIEAQAGNSPDSILLSSPRDVMQLPGFESGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + VLD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE + Sbjct: 236 LAPQGDELVLDACAAPGGKSCHLLELAPDIKLVAVDFDAKRLERVQQNLDRLSLKAELVH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q ++ Sbjct: 296 GDAANIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAQLQSQIFDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++++ V L +P LVP+ Sbjct: 356 KWLKPGGTLLYATCSILPQENKDQVSAFLARTPDAT-LVPIEQQANPD------------ 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ +I MDGF+ L + Sbjct: 403 -----DIGWQIVPGQDNMDGFYYARLVK 425 >gi|323692061|ref|ZP_08106308.1| sun protein [Clostridium symbiosum WAL-14673] gi|323503861|gb|EGB19676.1| sun protein [Clostridium symbiosum WAL-14673] Length = 449 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 102/457 (22%), Positives = 201/457 (43%), Gaps = 32/457 (7%) Query: 1 MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M A R + +L V+ K +L + ++ L ++D+ ++ +V+ T+ + Sbjct: 6 MTVKEPALREIILDILLEVLEKGKYSHVILSQAL--TKYQYLEKQDRSFIKRVVDGTVEY 63 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++D +L+ + + K ++ +LR+S QI ++D V D A + AV+ A++ + Sbjct: 64 RIQLDYILNSYSKVKVNKMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEK-RGFS 122 Query: 119 HFAKLVNSILRRVSR-EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR +SR + + + +PEW ++ YG+E + ++ + Sbjct: 123 GLKGFVNGVLRSISRGKDNLVFPDDSIRYSMPEWLASMWKSAYGEETFRRMMESFLKDRP 182 Query: 178 IDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + L+++ + E + + L F EG +QD Sbjct: 183 LMARLCLNRAEKQQILDSLGAQGVTAKDSRYADDVICLEGVDYLEGLEAFREGWLQIQDL 242 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 S+S+ G + V+D+C APGGK V D+S+ ++ + N+ R Sbjct: 243 SSSLAGDAAGIKDGDYVIDVCGAPGGKGLHAADILGGTGMVEIRDISEAKVSLIEENIGR 302 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L DA + P ++ D V+ D PCS G I R PD+ + + + AC Sbjct: 303 SGLTNLRAAVCDALSFDPDSEEAADVVIADLPCSGLGIIGRKPDIKYNMTPEKLHDLACL 362 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L +VKPGG +V+S C+++++++E+ ++ L P P+N + Sbjct: 363 QREILSVVQRYVKPGGTLVYSTCTVNREENEDNMRWFLEHFP----FEPVNLKGRLGEKL 418 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G+I+ P + DGFF +++ Sbjct: 419 SELSMESGYIQFLPGI--------HPCDGFFIAVMKK 447 >gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827] gi|188019701|gb|EDU57741.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827] Length = 428 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 115/454 (25%), Positives = 203/454 (44%), Gaps = 43/454 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ SL+ +L + ++++D+ L++ I LR+L Sbjct: 1 MKNTYNLRSIAAVAIGQVIDGGQSLSTVLPEL-----QKNINEKDKSLLQEICFGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--R 118 P+++ + ++ L K+ +L L+ V + Q+LY + +A + V A K + Sbjct: 56 PKLEWFVAQLMEKPLTGKQRTLHYLIMVGIYQLLYTRIPPHAALAETVNGAVALKRPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177 V +R + E + + P W +RL+N Y + I + P++ Sbjct: 116 GLINGVLRSFQRQQTQLEERNTNNSSQYLHPSWLLKRLQNAYPDKWQTIIDANNQRPPMW 175 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASA 230 + + + K + S+ LPGF +G VQD SA Sbjct: 176 LRVNSQHHTAEQYQKYLEENEIASELHPHHPCAIKLSEPTSVTRLPGFEKGWATVQDVSA 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288 +L N+ ++LDLCAAPGGKT ++ A V A+D+ + RL++++ NL RL Sbjct: 236 QGCAELLEPQNHETILDLCAAPGGKTTHILELAPKAHVVAVDIDEHRLKRVKENLQRLQQ 295 Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A I ++ +LFD +L+DAPCS+TG IRRHPD+ W R DI + Q K Sbjct: 296 QAAVIQGDGTKPEEWANGQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDINELTELQAK 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L ++K GG +V++ CS+ +++ ++ L P + ++ Sbjct: 356 ILESIWPYLKVGGTLVYATCSIMPEENSLQIKNFLAKHP----------------EASLN 399 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++I P + G DGFF L + Sbjct: 400 DGTTAGLQILPSIT--------GGDGFFYARLVK 425 >gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter rodentium ICC168] Length = 429 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 210/458 (45%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MNKKLNLRSIAAQAVEQVVEQGHSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ +L L+ V Q+LY + +A + VE A K + Sbjct: 56 SQLEWLIGKLMSRPMTGKQRTLHYLIMVGFYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + LL A + P W +RL+ + E+ +I +A Sbjct: 115 KGLINGVLRQFQRNQDALLAEFAHSEARFLHPSWLLKRLQKAWP-EQWESIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V W L + P + +LPGF +G QDA Sbjct: 174 MWLRVNRTHHTRNAWLALLEEAGMKGFTHPDYPDAVRLDTPVPVHALPGFDKGWVTAQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA V N +LDLCAAPGGKT ++ AKV A+DV ++RL ++ NL RL Sbjct: 234 SAQGCVAFLAPQNGEQILDLCAAPGGKTTHILEAAPDAKVLAVDVDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GM-NATVKQGDGRYPLQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +KPGG +V++ CS+ +++ + ++ L+ + + Sbjct: 353 QAEILDAVWPHLKPGGTLVYATCSVLPEENSQQIKAFLQRTADA--------------TL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +PE P + + + DGFF L + Sbjct: 399 SETGTPE-----LPGL--QNLPGAEEGDGFFYAKLIKK 429 >gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016] gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016] gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus MO6-24/O] Length = 426 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 122/454 (26%), Positives = 210/454 (46%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ + SL+ L A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYQVVDRGNSLSTALPE-----AQQSIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SIAGKLMDKPLKGKQRVFHHLILVGLYQLGHMRIPAHAAVGETVEGAQALKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR RE+ + AG + P W + L++ Y + + + ++ +P+++ Sbjct: 115 NAVLRNYQREQQALDEFSVSHNAGKYVHPSWLLKILQDAYPEQWQTIVEANNNKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + D + + L + + P + SLPGF +G VQDA+A + Sbjct: 175 VNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA VS +V ALD ++RL+++ NL RL+L A Sbjct: 235 SFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ Sbjct: 295 KVICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ ++ E V+ L +P + + Sbjct: 355 DAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTPAA--------------QLVGSER 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 ENPGRQILPG--------EEDMDGFYYAVLVKQA 426 >gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus ATCC 7061] gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus ATCC 7061] Length = 442 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 115/456 (25%), Positives = 204/456 (44%), Gaps = 38/456 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R ++ L + + + LL D + L+ +D+ L+ +V TL+ +D +L Sbjct: 2 RELALDALIKLEQNQAYSNLLLQSVMKD---KDLADQDKPLLTELVYGTLQNKLALDYML 58 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + QLLR+S+ Q++YL+ + A + AVE K+ + ++ + LVN Sbjct: 59 APFVKKP-QKVAPWVMQLLRMSLYQMVYLEKIPHRAAIHEAVELTKK-RGHKGISSLVNG 116 Query: 127 ILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +LR V RE + I + + P W + YG E ++ + P Sbjct: 117 VLRSVQREGVPAFDDIKDPVKRLSIETSHPLWLVQEWVQSYGFEAAESMCRIHLVPPKQT 176 Query: 180 LTVKFD---IETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASAS 231 L V +L + T LK + SIVS P F EG +QD S+ Sbjct: 177 LRVNRMKIGRAALQQELLDAGIETELGDLSEDALKLMKGSIVSTPSFQEGYVTIQDESSM 236 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + +VLD CAAPGGK+ + ++ +LD+ + +++ ++ RL+L Sbjct: 237 LVARALDPQPGEAVLDACAAPGGKSTHIAERMNDKGQIVSLDLHEHKVKLIKQAAKRLNL 296 Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +DA + FD +L+DAPCS G IRR PD+ +T+ +D + A Q+ Sbjct: 297 TQIEAKALDARKAKGDYSEASFDRILIDAPCSGFGVIRRKPDMKYTKSKEDSARLAAIQQ 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L + +KPGG +V+S C++D ++++V+ L+ P S + + Sbjct: 357 AILKETAPLLKPGGTLVYSTCTMDPTENQQVIHAFLQEHQDF---EPDLSLNERLPEQVA 413 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G ++I P G DGFF ++R+ Sbjct: 414 PFVQNGSVQILPHYF--------GTDGFFICSMRKK 441 >gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA206] gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA206] Length = 429 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKISDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N ILR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGILRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|304392692|ref|ZP_07374632.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp. R2A130] gi|303295322|gb|EFL89682.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp. R2A130] Length = 471 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 176/454 (38%), Positives = 259/454 (57%), Gaps = 18/454 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR V++ LL+ ++ L LLD +G +A R + + D++LVRAIV LR Sbjct: 23 KPGLAARQVATTLLTRIVDDGRGLDGLLDTRHGPAALRDMPEADRLLVRAIVTTALRHRG 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ LD + P+ L L V+ AQIL+++V D A VDLAV D+ + F+ Sbjct: 83 EIEHALDRCMDRKPPKNARQLIHALHVAAAQILFMEVPDSAAVDLAVTALSSDQRSTRFS 142 Query: 122 KLVNSILRRVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLY 177 L N++LRR+ REK L + ++ + +P W ++R YGKER+ +I+ + Sbjct: 143 GLANAVLRRMGREKDTLFEAMSDEARAVINMPPWLRKRTRKSYGKERLASIAMRHMQEPV 202 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 ID+ V+ + E WA KL V G +I + PG+ +G WWVQDA+A +P QL Sbjct: 203 IDICVRENPEEWAEKLGGV-HLFGNAVRVMREGAIHTWPGYDDGGWWVQDAAAQLPAQLM 261 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 G ++ VLDLCAAPGGKTAQL +GA VTAL+++ RL +L+ N++RL L + IE D Sbjct: 262 GDIDGKRVLDLCAAPGGKTAQLAAAGASVTALELNASRLHRLKGNMERLKLD-VETIEGD 320 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 F+Y P +LFDAVL+DAPCSS GTIRRHPDV W + + + A Q+++ +F+KP Sbjct: 321 LFEYEPAELFDAVLLDAPCSSLGTIRRHPDVQWAKSQAIVEELADLQKRMCEHAATFIKP 380 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG ++F+NCSLD+ + E+VV + P+EL PL +D ++ +G +R P Sbjct: 381 GGTLIFANCSLDRAEGEDVVAAI-TKGAAPLELSPLTPDDLFGLD--DFITGQGTVRTHP 437 Query: 418 DMLEKIDGVS---------SGMDGFFAVALRRLI 442 L + + G+DGFFA R Sbjct: 438 GQLNDVPPPTSADVDPARYGGLDGFFAARFIRTA 471 >gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15] Length = 429 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRNPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|319780892|ref|YP_004140368.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166780|gb|ADV10318.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 475 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 196/424 (46%), Positives = 261/424 (61%), Gaps = 5/424 (1%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ R L L D E G ++ L RD+ LVRAI+ LR+ I +L L LP Sbjct: 54 VIDARTPLDGLTDHENGHPQYKALDLRDRGLVRAILVTALRYRMTISGLLARRLEKPLPP 113 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L V+ AQIL+LD+ D A VD+AV AK D F+ LVN +LR ++R K Sbjct: 114 NATALSHILHVAAAQILFLDIPDSAAVDIAVTHAKSDPRTVRFSGLVNGVLRTLARAKET 173 Query: 138 L-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 +A P+WF ERL+ YG E+ I +A +D +VK D WA KL + Sbjct: 174 ELPAALAATDEAPKWFSERLKTTYGNEKARQILEAHRVEAPVDFSVKADPGLWAEKLGGI 233 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 +LPTG +R++ L + LPGFAEG WWVQDA+AS+P +LFG + L V DLCAAPGGKT Sbjct: 234 VLPTGTVRVENLVGPVTELPGFAEGAWWVQDAAASLPARLFGDVTGLRVADLCAAPGGKT 293 Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 AQLIV+GAKVTA+D SK RL +L NL+RL L AE + + D Y PK+LFDAVL+DAPC Sbjct: 294 AQLIVAGAKVTAVDTSKNRLVRLTQNLERLGLSAEIV-QADLLKYEPKELFDAVLLDAPC 352 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 SSTGT+RRHPDV WT+ + D+ K A QR+LL + ++ VKPGG +VFSNCSLD + E++ Sbjct: 353 SSTGTVRRHPDVPWTKTSADVEKLADLQRRLLARTVTLVKPGGRIVFSNCSLDPLEGEDL 412 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + L +P E+ + + L+P+G +R TP L+ SG+DGFFA Sbjct: 413 CRAFLAGTP---EITNDPLLQGEIAGIDPFLTPQGTLRTTPADLDLGAPERSGLDGFFAA 469 Query: 437 ALRR 440 +RR Sbjct: 470 RMRR 473 >gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB] gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB] Length = 449 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 130/461 (28%), Positives = 207/461 (44%), Gaps = 40/461 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +NAR+++ +L + R L+ G L +RD+ L+ +V LR+ R+D Sbjct: 2 INARVLAFQILLHMDRDASHPDRLIRGMLGRHE--RLEERDRALLTELVYGVLRWQGRLD 59 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +D + + + +++ LLR+++ QIL LD + D+A V+ AV AK + + K Sbjct: 60 WHIDQLSRTRPEKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTTQ-PAYLVKF 118 Query: 124 VNSILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACIS 174 VN +LR R + + AG P W+ ERL + +G E L I +A + Sbjct: 119 VNGVLREALRRRSRWIWPEAGEEPGKYIAVTTAHPIWYVERLLHEFGFEETLDICNANNT 178 Query: 175 PLYIDLTVK---FDIETWAHKLNAVMLPTGG-------IRLKELPESIVSLPGFAEGVWW 224 + L V I+T + +RL L + + +G+ Sbjct: 179 VAPMTLRVNALKTSIDTILQWCAEHGIDAEPSGVVPTAVRLSGLRRDLAETSIYRDGLVQ 238 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 VQD ++ I L VLDLCA GGK+ L+ +V A+D S +LE+LR Sbjct: 239 VQDEASQIVSTLVAPRAGERVLDLCAGFGGKSTHLGILMGDRGEVVAVDNSAWKLEELRK 298 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N R L D F++ P FD VL+DAPCS GT+RR+PD+ W R D + Sbjct: 299 NARRQGLRIIKPRTADLFEFSPGTEDLFDRVLLDAPCSGFGTLRRNPDIKWRRHLKDPRR 358 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q+++L FVKPGG +V+S C+L +++++ V + S P + Sbjct: 359 FGRIQKEMLDHAARFVKPGGALVYSACTLFQEENDAVAEHFAASHPDWQ----IEPVGPD 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D ++ + R P +DGFFA L+R Sbjct: 415 LPDACRGMASGPFFRTWPH--------RHQVDGFFAARLKR 447 >gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli F11] gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 200-1] gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101] gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli F11] gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli LF82] gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 200-1] gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101] gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG 857C] gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 60-1] Length = 429 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-2-3B'a(2-13)] Length = 457 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 122/485 (25%), Positives = 192/485 (39%), Gaps = 80/485 (16%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ L + R+ +L +S L D+ LV +V R +D Sbjct: 1 MNARQLALLALQKIERQNAYADLVLGHLLANS---SLIPADRHLVSELVYGITRRRRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 A++D + ++ L+ +L + + Q+ +LD + A + +VE A++ + Sbjct: 58 ALIDCLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQMGLG-SLTGV 116 Query: 124 VNSILRRVSREKIELLQRIA-----------------GISIIPEWFKERLENFYGKERVL 166 VN ILR R+ ++ ++ P+W G Sbjct: 117 VNGILRAYQRQVLDQPEKDPLKPLEDTLPADPIQALGIRHSFPDWLVSLWWERLGPVETE 176 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLP 216 + P ++DL V + A + G +RL++ I +LP Sbjct: 177 QLCAWFNQPPHLDLRVNPLRADVNKVIQALAAAGIPALPISEVPGALRLQDHAGDITALP 236 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSK 273 GFA+G W VQDASA V V+D CAAPGGKT Q+ + ALD Sbjct: 237 GFAQGWWSVQDASAQQVVHWLDPQPGERVIDCCAAPGGKTTQIAQHMQDRGEIWALDRHP 296 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMD------------------AFDYCPKKLFDAVLVDAP 315 RL +L N RL L + + +D P + D VL+DAP Sbjct: 297 HRLRRLEENRQRLGLSSIRPLAIDLLSLSAAADRVSGTESLPPAPLPPWQSADRVLLDAP 356 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS GT+ RH D W + + I + A Q +LL ++KPGG++V++ C+L ++EE Sbjct: 357 CSGLGTLHRHADARWRQTPERIPELAHLQAQLLQVAARWLKPGGVLVYATCTLHPAENEE 416 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 ++Q L S P + I P ++ DGFF Sbjct: 417 IIQAFLDSHPNWAAEGDP-------------------LLIWPHRQDR--------DGFFI 449 Query: 436 VALRR 440 LRR Sbjct: 450 QRLRR 454 >gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3] gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3] Length = 468 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 185/460 (40%), Gaps = 40/460 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +L+ + + +L + D +F +RD+ LV +V LR+ +D Sbjct: 21 PRAVALRILTALEKGHRTLDQVADEALARVSFP--EKRDRALVTTLVYGVLRWRNTLDYT 78 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + L R ++ +LR+ + Q+ +LD + D+A ++ +V+ +K+ R + VN Sbjct: 79 IVHFSRTPLQRMDPAVLNILRLGLFQLRFLDRIPDFAAINSSVDLSKQAGLGR-LSGFVN 137 Query: 126 SILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISPL 176 +LR +R E PEW R +G E + + D + Sbjct: 138 GLLRSSTRHPGEPDPPDMDKDPVQALCVTKSFPEWMIRRWIARFGIEETVQLCDFLNTVP 197 Query: 177 YIDLTVKFDI---ETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 I + V E A L + + + F G + VQ Sbjct: 198 PITVRVNGLRAAPEQVAASLAQEAAGVTPGRHAPEAVSFSSPKVPVHEMTAFGAGWFQVQ 257 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D +A + L VLD CA GGKT L + + ++ A D +LE+L + Sbjct: 258 DEAAQLIGLLTDPRPGQRVLDACAGLGGKTGHLARLMENQGRIVAADRDTAKLERLAGEM 317 Query: 284 DRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + + +D FD VL D PCS TG IRR+PD W D+ + Sbjct: 318 TRLGITNVRPMTLDMLVPEQLKDAGGFDRVLADCPCSGTGVIRRNPDTKWRLSEQDLARL 377 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L V+ GG++V++ CS++ ++++ VVQ L+ P + + Sbjct: 378 QNDQIAMLTNLADHVRDGGLLVYAVCSMEPEENDAVVQSFLKRRPDFAIDTGVAADVPAV 437 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G+ R P GMDGFF V L++ Sbjct: 438 AGFTDDP---GFFRTFP--------WRHGMDGFFGVRLKK 466 >gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli WV_060327] Length = 429 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C K+ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 16-3] Length = 429 Score = 269 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M605] gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli AA86] gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M605] Length = 429 Score = 269 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V +TW L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDTWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|260857409|ref|YP_003231300.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O26:H11 str. 11368] gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O111:H- str. 11128] gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O26:H11 str. 11368] gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O111:H- str. 11128] gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli EPECa14] gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1180] Length = 429 Score = 269 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 209/458 (45%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + ++ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQIVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V V Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGVYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAGFYASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNL 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + EG DGFF L + Sbjct: 413 PG--TEEG-------------------DGFFYAKLIKK 429 >gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 438 Score = 269 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 210/456 (46%), Gaps = 45/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 11 MKK-QNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 64 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+L+ + +A + VE A K + Sbjct: 65 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVAIKRPQ-L 123 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ ELL A + P+W RL+ Y + + P+ Sbjct: 124 KGLINGVLRQFQRQQEELLAEFAKSETRFLHPDWLLNRLKKAYPQRWQDIADANNQRPPM 183 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGF EG VQDAS Sbjct: 184 WLRVNRNHHTRDAWLALLEEAGMSGFAHDAYPDAVRLASPVPVHALPGFDEGWVTVQDAS 243 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT ++ + V A+D+ +RL ++ NL RL Sbjct: 244 AQGCMTWLEPKNGEQILDLCAAPGGKTTHILEVAPQASVMAVDIDDQRLSRVYDNLKRLG 303 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D ++C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 304 MKA-QVKQGDGRKPTEWCGETQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQ 362 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L+ +P + Sbjct: 363 SEILDAIWPHLKPGGTLVYATCSILPEENSQQISAFLKRTPGA--------------TLR 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +PE ++ + DGFF L + Sbjct: 409 DTGTPE-------HPGQQNLPGAEEGDGFFYAKLIK 437 >gi|323487019|ref|ZP_08092331.1| ribosomal RNA small subunit methyltransferase B [Clostridium symbiosum WAL-14163] gi|323399667|gb|EGA92053.1| ribosomal RNA small subunit methyltransferase B [Clostridium symbiosum WAL-14163] Length = 444 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 102/457 (22%), Positives = 201/457 (43%), Gaps = 32/457 (7%) Query: 1 MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M A R + +L V+ K +L + ++ L ++D+ ++ +V+ T+ + Sbjct: 1 MTVKEPALREIILDILLEVLEKGKYSHVILSQAL--TKYQYLEKQDRSFIKRVVDGTVEY 58 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++D +L+ + + K ++ +LR+S QI ++D V D A + AV+ A++ + Sbjct: 59 RIQLDYILNSYSKVKVNKMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEK-RGFS 117 Query: 119 HFAKLVNSILRRVSR-EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR +SR + + + +PEW ++ YG+E + ++ + Sbjct: 118 GLKGFVNGVLRSISRGKDNLVFPDDSIRYSMPEWLASMWKSTYGEETFRRMMESFLKDRP 177 Query: 178 IDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + L+++ + E + + L F EG +QD Sbjct: 178 LMARLCLNRAEKQQILDSLGAQGVTAKDSRYADDVICLEGVDYLEGLEAFREGWLQIQDL 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 S+S+ G + V+D+C APGGK V D+S+ ++ + N+ R Sbjct: 238 SSSLAGDAAGIKDGDYVIDVCGAPGGKGLHAADILGGTGMVEIRDISEAKVSLIEENIGR 297 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L DA + P ++ D V+ D PCS G I R PD+ + + + AC Sbjct: 298 SGLTNLRAAVCDALSFDPDSEEAADVVIADLPCSGLGIIGRKPDIKYNMTPEKLHDLACL 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L +VKPGG +V+S C+++++++E+ ++ L P P+N + Sbjct: 358 QREILSVVQRYVKPGGTLVYSTCTVNREENEDNMRWFLEHFP----FEPVNLKGRLGEKL 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G+I+ P + DGFF +++ Sbjct: 414 SEPSMESGYIQFLPGI--------HPCDGFFIAVMKK 442 >gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224493261|sp|B5R1E5|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493262|sp|B5RH47|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 429 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 209/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149] gi|153793969|gb|EDN76389.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149] Length = 448 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 95/462 (20%), Positives = 188/462 (40%), Gaps = 35/462 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +L V ++ + L+ ++ L ++++ + + TL + Sbjct: 1 MTKQVTERELVLAILMEVTQQNVYSHLALNAVLE--KYQYLEKKERAFITRVTEGTLEHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L+ + + K ++ +LR +V Q+ Y+D V D AV + AV+ A + K Sbjct: 59 IELDYILNQFSKVKVNKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVK-KGFGT 117 Query: 120 FAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR E ++R++ + +PEW + + Y + + ++ A Sbjct: 118 LRGFVNGVLRNVARGLDQVEYPTEGIERLSVVYSMPEWILKLWKKTYDLDVIESMLQAFQ 177 Query: 174 SPLYIDLTVK---FDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWW 224 + + E L + + + L F +G ++ Sbjct: 178 EETPVTIRCNLAKTTPENLKESLQKEGVTVTPHPYLSYAFWIQDYDHLSELESFQKGEFY 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRC 281 VQD S+ + +L V+D+CAAPGGK + V A D+S ++ + Sbjct: 238 VQDISSMLVGELADPKKGDRVIDVCAAPGGKALHVAEKLRGTGSVEARDLSLYKVGLITE 297 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N++R L ++ DA D V+ D PCS G + + D+ + + Sbjct: 298 NIERSGLTNIHAVQKDATVCDADVKDAADLVIADLPCSGLGVLAKKTDLKYKATEQSTKE 357 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR++L S+V+PGG +++S C+++ ++ E V L+ P L P+ Sbjct: 358 LAGLQREILKNAASYVRPGGTLIYSTCTINPAENIENVHWFLKEFP-EFVLDPIADRL-- 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ G +++ P + DGFF + Sbjct: 415 CSTLQNSVEEAGCLQLLPGI--------HKSDGFFIARFGKK 448 >gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris marina MBIC11017] gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris marina MBIC11017] Length = 443 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 200/464 (43%), Gaps = 48/464 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R ++ L V + L + ++ D+ L+ ++ ++R Sbjct: 1 MTP--NPRQLAYRGLKAV-HRGAYADVALSRVM----PKTIADADRRLLTELLYGSVRRQ 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +DA++D ++ L+ LL + + Q+ +LD + D A + VE AK+++ + Sbjct: 54 RTLDALIDQFAKKPAHQQPPDLRTLLHLGLYQLRFLDHIPDAAAIFTTVELAKQNQLS-G 112 Query: 120 FAKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 + VN +LR+ +R + +Q + + P+W + + G E + Sbjct: 113 LSGFVNGLLRQYARAAANLNDPLELPPDPIQHLGILYSYPDWIVQVWHDQLGSEETEKLC 172 Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFA 219 D C P +IDL + D E+ +L + +R++ I LPGF Sbjct: 173 DYCNQPPHIDLRINSLKTDRESVRSQLASAGVTTTPLPHLPQALRIEGKSGPIPQLPGFQ 232 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 EG+W VQ+ASA + L LD+CAAPGGKT + + + +V A D + RL Sbjct: 233 EGLWTVQEASAQLVGHLLNPQPGAIALDVCAAPGGKTTHIAELMENQGEVWACDRTPSRL 292 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 KL N RL + I D+ D VLVDAPCS GT+ RH D W + D Sbjct: 293 RKLNQNTQRLGIDTVTIWTGDSRQLSNHIPLADYVLVDAPCSGLGTLHRHADARWQQTPD 352 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 +I + Q LLL VKPGGI+++S C+L ++E ++ + L P P+ Sbjct: 353 NIQDLSTLQLDLLLNSARRVKPGGILLYSTCTLHPLENENIIDQFLAQMPQWQTQQPIAE 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S + ++I P MDGFF LR Sbjct: 413 WVPTSGPQSS-------VKILPH--------QQNMDGFFMAILR 441 >gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM 16795] gi|164603075|gb|EDQ96540.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM 16795] Length = 441 Score = 269 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 104/460 (22%), Positives = 215/460 (46%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M +R ++ +L + + + ++ + D L RD+ I+ + +D Sbjct: 1 MKSRNLAYKVLFDIEKNQNYSNMAINKHFKD---CNLDNRDRGFATEIIYGVVENKIYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + + ++ LLR+ + QIL+LD V+DYA V+ V K+ + A Sbjct: 58 YIIDKLSKIKSNKLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKK--LDNRSAGF 115 Query: 124 VNSILRRVSRE--------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 VN++LR V R+ + + +A +W + +G+E + +A Sbjct: 116 VNAVLRNVIRQKEDIGEVKIKDTVDNLATKYSYNKWIVRNWISNFGREFTEDLLEANTER 175 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQ 226 I L V + L + + ++I + + +G++ VQ Sbjct: 176 PSIYLRVNTLKTTRDELIKLLEEQEVNCEKVPFMDEAIKVNNLKNIENNELYKKGLFTVQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + ++ + VLD+C+APGGKT + + + +V + D+ + +++ ++ ++ Sbjct: 236 DISSMLVGKILNPQKDTKVLDVCSAPGGKTTHIATLMENSGQVISRDIFEHKIKLIQNSV 295 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L D+ DA + FD+VL D PCS G I+R P++ + ++ ++I Sbjct: 296 NRLGLKNVDVQLFDALNLDKDSIDKFDSVLADVPCSGLGIIKRKPEIKY-KEKEEIKDLP 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+++L +VK GG +++S C++ ++ EVV+ L+S+ +L + ++I Sbjct: 355 KLQKQILQNAAKYVKVGGTLIYSTCTIQDDENIEVVESFLQSNK-RFKLEKI-----ENI 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + +G+++I P++ GMDGFF L+R+ Sbjct: 409 NIDLENEDKGYLKIYPNV--------HGMDGFFIAKLKRV 440 >gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii 3937] gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii 3937] Length = 431 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 129/460 (28%), Positives = 207/460 (45%), Gaps = 46/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ L V+ + SL+ LL D +S++D+ L++ I LR L Sbjct: 1 MKSKYNLRSIAATALVQVVEQGQSLSHLLPALQRD-----ISEKDRGLLQEICFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P++D L ++ L K+ L LL V + Q+++ + +A + V A K + Sbjct: 56 PQLDWHLRQLMAKPLTGKQKVLHYLLMVGLYQLIHTRIPPHAALAETVNGAVALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N + +R E + LQ P+W +RL+ Y ++ I +A Sbjct: 115 KGLINGVLRQFQRQQDELQQRLQNNPARYAHPDWLLQRLKKAYPQQW-ERIVEANNQHPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V + L + P ++ LPGF +G VQDA Sbjct: 174 MWLRVNRQHHTRAAYLALLQEKEITAYPHAFYPDAIRLGTPCAVNQLPGFEQGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA + ++ +LDLCAAPGGKT ++ A V A+DV ++RL+++R NL RL Sbjct: 234 SAQGCIHWLAPQDHEEILDLCAAPGGKTTHILEAAPHAHVLAVDVDEQRLKRVRENLQRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +AE + D ++C KLFD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GQHAE-VKCGDGRTPTEWCGDKLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+ +L +K GG +V++ CS+ +++ + V L+ P V + Sbjct: 353 QQAILEAIWPRLKSGGTLVYATCSILPEENHQQVAAFLQRHPDAVLVDTGR--------- 403 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + DGFF L + Q Sbjct: 404 ------------LEHPGIQNLPAAEDGDGFFYAKLVKNGQ 431 >gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase B [Escherichia coli UTI89] gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1] gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88] gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|123265979|sp|Q1R644|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493249|sp|A1AGI0|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766854|sp|B7MCQ4|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89] gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1] gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli S88] gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli IHE3034] gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146] gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 110-3] gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H252] gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H263] Length = 429 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSMLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39] gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 21-1] gi|254766856|sp|B7NLK8|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli IAI39] gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 21-1] Length = 429 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 84-1] gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 124-1] gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 84-1] gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 124-1] gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 85-1] Length = 429 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 209/458 (45%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNL 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + EG DGFF L + Sbjct: 413 PG--TEEG-------------------DGFFYAKLIKK 429 >gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase B [Escherichia coli O127:H6 str. E2348/69] gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 2362-75] gi|254766853|sp|B7UK12|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O127:H6 str. E2348/69] gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 2362-75] gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli RN587/1] Length = 429 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C K+ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris StLB046] Length = 453 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 113/458 (24%), Positives = 201/458 (43%), Gaps = 42/458 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L V + + LL + +D+ L+ + TL+ +D Sbjct: 12 NVRDAALTILLTVDKSQAYSNLLLHQTIEKYK---IDAKDRGLLTELTYGTLQHKLTLDY 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ + + ++ LLR+S+ Q+ YL + +A V+ AVE AKR + ++ A +V Sbjct: 69 YLEPFIRG---KVDIWVRWLLRMSLYQMQYLTRIPAHAAVNEAVEIAKR-RGHKGIASMV 124 Query: 125 NSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR R + + +R+A + P+W +R YG ++ + Sbjct: 125 NGILRSILREGVRSTDLIEDANERLAIETSHPQWLVDRWVESYGYDKTREMLLENNIAPL 184 Query: 178 IDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V T L A L F G+ +QD S Sbjct: 185 QTVRVNTTKATVEQVLTTLEREGVKARRSEYIPECLHLESGQAARTGAFRNGLITIQDES 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + +P ++ + VLD+CAAPGGKT ++ + + A D+ ++L+ + N+ RL Sbjct: 245 SMLPAKVLNPQPGMKVLDMCAAPGGKTTHLAEVMKNEGSILATDLHPKKLDLIEENVARL 304 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + +D + K+ +DA+LVDAPCS G +RR PD+ +T+ +D+ Sbjct: 305 GLNIIETAPLDGRKAAGFLQKEGYDAILVDAPCSGLGVMRRKPDIKYTKREEDLESLQTI 364 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + +K G +V+S C++D+ ++E VQ L+ P + LVP+ + + Sbjct: 365 QLSILNNAVQLLKQDGRLVYSTCTVDRSENEGTVQAFLKEHP-EMNLVPIENLPTQL--- 420 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A +G +++ P + G DGFF A + Sbjct: 421 -EAKQQDGMLQVFPQDI--------GSDGFFVAAFVKK 449 >gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51] gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 453 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 189/460 (41%), Gaps = 39/460 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ +L + ++ ++ D + R++ L +VN TL+ +D Sbjct: 6 SRALAVQILQRIEEEKAYANLVMQKSLHDLS----DPRERQLTTLLVNGTLKHRLTLDYA 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L L + ++ +LR+S Q+LYL + ++ VE K+ + + LVN Sbjct: 62 LRRHLRKPLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVELTKKQQG--KYTSLVN 119 Query: 126 SILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 S+LRRV E+L ++ PEW +R YG A+ A P Sbjct: 120 SVLRRVLETGWEMLWPSQEKEPVRYLSLRYSHPEWMVKRWLKRYGMADTEALCQANNEPA 179 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 + + +L + + E S+ LP F EG++ VQD Sbjct: 180 PVWIRTNTLKISRADLQARLEEEGVKVTIGERVPESLMIEEFGSLDQLPSFQEGLFTVQD 239 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD C APGGKT + + ++ A D+ +++ + Sbjct: 240 ESSQLIAHVLNPQAGQKVLDACGAPGGKTTHLAQRMENQGEILAFDIHPHKVKLIEDLAA 299 Query: 285 RLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL + DA + VLVDAPCS G +RR D+ W ++ D+I Sbjct: 300 RLGITIIRAQAGDARELAGVKDASCHKVLVDAPCSGLGVLRRRADMRWHKEEDEIKTLPA 359 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSI 401 Q +L + V GG +V+S C+++ +++ EVV+ P + Y + Sbjct: 360 LQLAILERAAQCVAAGGELVYSTCTIEPEENFEVVKAFRAKHPEFTTVDLSGELPYSLAS 419 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +G+++I P GMDGFF RR+ Sbjct: 420 EQDRKQAAKGFLQILPH--------KQGMDGFFLAKFRRV 451 >gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase B [Shigella dysenteriae Sd197] gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1617] gi|123742076|sp|Q32B61|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1617] Length = 429 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMSGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGKHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 57-2] Length = 429 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 213/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTTDA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase B [Shigella sonnei Ss046] gi|123759539|sp|Q3YWX1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 429 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum C str. Eklund] gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum C str. Eklund] Length = 443 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 107/457 (23%), Positives = 186/457 (40%), Gaps = 40/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V +K +L + + +D+ L+ IV T+++ ID Sbjct: 3 KARKICVDVLEMVFKKNAYSNIVLRQTLNKNK---IDDKDKGLITEIVYGTIKYKYTIDT 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L+ L + + +LR++V QI +LD + ++A V+ AVE AK+ + +KLV Sbjct: 60 ILNNYLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKQ-RSVGASKLV 118 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R + +W L YG E I Sbjct: 119 NGVLRNYLRNLDKKYYNEKSLVETLCFKYSYDKWLVNMLIKQYGNEIAEDILKGLNERPA 178 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + + +SI P F EG VQD Sbjct: 179 VTVRVNNLKTDYDEAFKNLEDYGYDVEEGYICPEAIVINKGKSIEKNPLFKEGKITVQDE 238 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + +VLDLC+APGGKT + + + V A D+ ++ ++ N R Sbjct: 239 SAMLVAPSIDAKEGATVLDLCSAPGGKTTHISEIMNNTGIVKAFDIHDNKISLVKENAKR 298 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + EMDA + + D VL+D PCS G IR+ P++ +T+D Sbjct: 299 LGINNIACAEMDACKFNKELENSADMVLIDVPCSGLGIIRKKPEIKYTKDVKSTKDIVAI 358 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+K++ +V+ G +V+S C+++K ++E+ + ++ P + Sbjct: 359 QKKIMENAAKYVRKEGTLVYSTCTINKDENEKNINWFIKKFPEYKV-----EPLFYGNMN 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +G + I P+ MDGFF L++ Sbjct: 414 NIIYNEDGTVTILPNKY---------MDGFFIAKLKK 441 >gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae CIP 101886] gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae CIP 101886] Length = 426 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 203/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R V++ ++ V+ + SL+ L A + ++ RD L++ I LR+LPR++ Sbjct: 1 MNVRAVAAQVIYQVVDQGQSLSAALP-----PAQQKVAPRDGALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ Y+ + +A V V K K+ + LV Sbjct: 56 SITQSLMDKPLKGKQRVFHHLILVGLYQLSYMRIPAHAAVAETVNATKVLKKPQ-LRGLV 114 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R + + AG P W L+ Y + + +P+++ Sbjct: 115 NAVLRSYQRNQETLDAASVAHDAGKYGHPGWLLTLLQQAYPTQWEQVVEANHEKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + E + L+ + T E P + +LPGF+EG VQDA+A + Sbjct: 175 VNRTHHTREAYKALLDQAGIETSVHPEAEDALKLATPCDVTALPGFSEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD CAAPGGKT ++ V A+DV RL ++ N+ RL L A Sbjct: 235 AVDYLKPQAGELILDCCAAPGGKTCHILEHEPSANVVAMDVDAARLTRVEDNVKRLKLKA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI + Q ++L Sbjct: 295 RVICGDARTPDEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIDQLVSLQSEIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +K GG +V++ CS+ Q++ E V+ L +P V + Sbjct: 355 DAMWAQLKSGGTLVYATCSVTPQENAEQVKAFLTRTPDAV--------------LETGTP 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P MDGF+ L++ Sbjct: 401 TQPGRQILPG--------QEDMDGFYYAVLKK 424 >gi|167648734|ref|YP_001686397.1| Fmu (Sun) domain-containing protein [Caulobacter sp. K31] gi|167351164|gb|ABZ73899.1| Fmu (Sun) domain protein [Caulobacter sp. K31] Length = 426 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 158/440 (35%), Positives = 226/440 (51%), Gaps = 23/440 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR + L+ + +R L +AFR L R++ RA+ TLR L I Sbjct: 8 GLPAREGALALIDAALSRRGGLDEA----ASANAFRFLEPRERAFARALAMATLRHLGPI 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D L L P ++ LLR+ Q +L+V +A V +VE A K +R F L Sbjct: 64 DRALAGKLAKEPP---PRVRNLLRLGATQAFFLEVPAFAAVATSVELAGASKTSRPFKGL 120 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN++LR + R+ A + P W R + YGKE A++ DL++K Sbjct: 121 VNAVLRGLLRDGALSD---ASEHLAPPWLYARWVSAYGKETADAVAAQIGFEPATDLSLK 177 Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 D + A +L +LP G +R E + + P F +GVWW+QDA+A+IP +L Sbjct: 178 PDFDATALAAELEGEILPGGTLR-TERRGDVSAWPAFDDGVWWIQDAAAAIPARLLNLKP 236 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 + LDLCAAPGGKT Q++ +GA+V A+D S RL ++ NL R+ + AE I A + Sbjct: 237 GETALDLCAAPGGKTMQMVAAGAQVVAIDRSPARLGRVTENLARMSMQAEVIAAD-AGAW 295 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDAVL+DAPCS+TGT RRHPDVLW D+ A Q KLL +KPGG + Sbjct: 296 DDARTFDAVLLDAPCSATGTFRRHPDVLWAARPGDVASLAGVQSKLLDSAAGRLKPGGRL 355 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E V+ L P + L P+ S + A +L+P G +RI P Sbjct: 356 VYCVCSLEPEEGEAQVEAFLARRP-DMALDPITSEEGGAP--AASLTPRGTLRILPHH-- 410 Query: 422 KIDGVSSGMDGFFAVALRRL 441 G+DGFFA +L Sbjct: 411 ----REGGLDGFFAARFVKL 426 >gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales bacterium HF0010_22E23] Length = 426 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 126/455 (27%), Positives = 203/455 (44%), Gaps = 46/455 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ ++ V+ + SLT +L A + ++ RD L++ I LR+LPR++ Sbjct: 1 MNVRAMAAKVIFQVVDQGQSLTAVLPK-----AQQQIADRDGALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ ++ L K+ L+ V + Q+ Y+ V +A V V A + + LV Sbjct: 56 AITQSLMEKPLTGKQRVFHHLILVGLYQLNYMRVPAHAAVAETVN-ATKPLKKPQLRGLV 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACIS-PLYID 179 N++LR RE+ L + AG P W + L+N Y + P+++ Sbjct: 115 NAVLRNYQREQDALNEKAISHDAGRYGHPGWLLKLLQNAYPDSWQQIVDSNHQKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + + LNA + E P + LPGF +G VQDA+A + Sbjct: 175 VNRTHHNRDEYLELLNAEGIEGEAHPEAEDAIKLGSPCDVTKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD CAAPGGKT AKV A+D RL ++ NL RL+L Sbjct: 235 SVNYLQPKAGELILDCCAAPGGKTCHILEHQPNAKVVAIDADANRLTRVEENLGRLNL-N 293 Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 D+I D ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI + Q ++ Sbjct: 294 ADVICGDARSPDEWWNGEDFDRILLDAPCSATGVIRRHPDIKWLRRADDIEQLVTLQAEI 353 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 +K GG +V++ CS+ Q++ E V+ L ++ Sbjct: 354 FDAMWQKLKRGGTLVYATCSVTPQENAEQVKAFLARHDDA--------------NLQTGD 399 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +I P MDGF+ L++ Sbjct: 400 ADNPGRQILPG--------QDDMDGFYYAVLQKQA 426 >gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227] gi|123728324|sp|Q31VY8|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227] gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae CDC 74-1112] Length = 429 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|16124357|ref|NP_418921.1| rRNA methyltransferase RsmB [Caulobacter crescentus CB15] gi|221233040|ref|YP_002515476.1| 16S rRNA m5C methyltransferase RsmB [Caulobacter crescentus NA1000] gi|13421207|gb|AAK22089.1| rRNA methyltransferase RsmB [Caulobacter crescentus CB15] gi|220962212|gb|ACL93568.1| 16S rRNA m5C methyltransferase RsmB [Caulobacter crescentus NA1000] Length = 429 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 157/441 (35%), Positives = 221/441 (50%), Gaps = 22/441 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR + L+ + +R L + FR L R++ RA+ LR L I Sbjct: 8 GLPAREAALTLIDAALSRRGGLDEA----ASANGFRFLEPRERAFARALAMAVLRHLGPI 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D L L + P + + LLR+ AQ YL+V +A V +VE A +K +R F L Sbjct: 64 DRALTARLQKAPPDR---VMHLLRLGAAQAFYLEVPAFAAVATSVELAGANKTSRPFKGL 120 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN++LR + R+ + P W R +G+ I+ DL+ K Sbjct: 121 VNAVLRGLLRDAPPAD---DPSLLAPPWLYARWVAAFGEATARQIAGQIAIEPATDLSAK 177 Query: 184 F--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 D+ L A +LP G +RL+ + + PGF +G WWVQDA+A++P +L Sbjct: 178 PGADLAPLVEALEAEVLPGGTLRLRR-KGDVAAWPGFEDGTWWVQDAAAAVPARLLDVQP 236 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 SVLDLCAAPGGKT QL +GA+V ALD S RL++L NL R L AE + DA + Sbjct: 237 GASVLDLCAAPGGKTLQLAAAGAQVVALDRSAARLKRLSENLTRTGLSAEIV-AADAAVW 295 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDA+L+DAPCS+TGT RRHPDVLW D+ A Q ++L +KPG + Sbjct: 296 DDTRTFDAILLDAPCSATGTFRRHPDVLWAARPGDVASLANVQARILDAAADRLKPGARL 355 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDML 420 V+ CSL+ ++ E V+ L V L P+ +A S A L+P G +R+ P Sbjct: 356 VYCVCSLEPEEGEAQVEAFLARR-QDVALEPITAAEAPSAGFPEASLTPRGTLRLLPHH- 413 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G DGFFA R+L Sbjct: 414 -----RDDGQDGFFAARFRKL 429 >gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase B [Escherichia coli E24377A] gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E22] gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E110019] gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B171] gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11] gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1] gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase B [Escherichia coli 55989] gi|256020647|ref|ZP_05434512.1| 16S rRNA methyltransferase B [Shigella sp. D9] gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O103:H2 str. 12009] gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B088] gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 107-1] gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 119-7] gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 115-1] gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 182-1] gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 78-1] gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W] gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 145-7] gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA271] gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H591] gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent [Shigella sp. D9] gi|224493245|sp|A7ZSH7|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766855|sp|B7LHZ0|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766858|sp|B7M0Z4|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|254766860|sp|B6I202|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E24377A] gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E22] gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E110019] gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B171] gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11] gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli 55989] gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli IAI1] gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli O103:H2 str. 12009] gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B088] gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 115-1] gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 182-1] gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 119-7] gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 107-1] gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 78-1] gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W] gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 145-7] gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli W] gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E128010] gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1357] gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11] gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120] gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 117-3] gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E1167] gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA271] gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H591] gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent [Shigella sp. D9] Length = 429 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B354] gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 69-1] gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B354] gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 69-1] Length = 429 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli LT-68] Length = 429 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a] gi|254766857|sp|B7N0S9|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli ED1a] Length = 429 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 213/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLEWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str. 168] gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp. subtilis str. 168] gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp. subtilis str. SMY] gi|3915867|sp|P94464|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Bacillus subtilis subsp. subtilis str. 168] Length = 447 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 207/463 (44%), Gaps = 39/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R ++ L + + + LL + LS +++ L+ +V TL+ Sbjct: 1 MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQNRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S+ Q+ YL+ + D A + AVE AK + ++ Sbjct: 57 IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN +LR + RE + I A + PEW + + YG E I Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P L V A L+ +K L +I F G Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + + ++ +VLD CAAPGGK+A + + + VT+LD+ K +++ ++ Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DRL L MDA + FD +LVDAPCS G IRR PD+ +T+ DD Sbjct: 295 AADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSA 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +L + VK GG +V+S C++D+ +++EV+ ++ P P S Sbjct: 355 RLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDF---EPDLSLEK 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +G ++I P G DGFF ++R+ Sbjct: 412 RLPEKVRPFVRDGRLQILPHYF--------GTDGFFICSMRKK 446 >gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B185] gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli B185] Length = 429 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + + W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDNWLALLDEAGMKGFPHTDYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TW10509] Length = 456 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 211/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 28 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 82 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 83 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 141 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ E + P W +RL+ Y ++ I + P+ Sbjct: 142 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 201 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + ++W L+ + P + LPGF EG VQDAS Sbjct: 202 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 261 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 262 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 321 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 322 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 380 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +K GG ++++ CS+ +++ ++ L+ + ++ Sbjct: 381 SEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKAFLQRTADA--------------ELC 426 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 427 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 456 >gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 429 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 208/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ + + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVFP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQHIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + ++ L+ +P ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETGTPDQPGQQNLP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG DGFF L + Sbjct: 414 GG--EEG-------------------DGFFYAKLIKK 429 >gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M718] gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M718] Length = 429 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter tengcongensis MB4] gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium pacificum DSM 12653] gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter tengcongensis MB4] gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium pacificum DSM 12653] Length = 443 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 104/460 (22%), Positives = 195/460 (42%), Gaps = 41/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ +L V+ K+ + + + + D V+ +V + +D Sbjct: 1 MNARELAYRILYDVVVKKAYINISFAKHLRNDEVKEV---DAAFVKELVYGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + S K LL + + Q+LY+D V DYA ++ VE AK+ + + Sbjct: 58 FILSFFIKKSADTKA---LLLLEMGLYQLLYMDKVPDYAAINETVEIAKKFLSKKGAS-F 113 Query: 124 VNSILRRV--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N++LR +K + P+W ER + ++ + + Sbjct: 114 LNAVLRSYLREKEKVKFPDKQNFPYYLKVTYSYPDWIIERFLKNFDADKAEKLLASLNEK 173 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQD 227 I V E KL + L ++ S P + +G+ QD Sbjct: 174 PEISYRVNTLKISAEELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQD 233 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 ++ + ++ +LD+CAAPGGKT + + + +V A D+ RL+ + N Sbjct: 234 EASMLVSRILSPQKGERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCR 293 Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSA 341 RL + DA D VL D PC+ G IR+ PD+ D +++ Sbjct: 294 RLGVTNVKTEVFDATFVNESYLEKADRVLADVPCTGIGIIRKKPDIKLKSYDKEELRGLI 353 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +VK GG++V+S C++ +++++EV+++ L+ P + + + Sbjct: 354 ERQYRILKSSSLYVKKGGVLVYSTCTIGREENQEVIERFLKEHKNF---EPADISEDLPL 410 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + S G+I+ TP + +DGFF L+R+ Sbjct: 411 NLKVKTSDLGYIQTTP--------LEHKIDGFFIAKLKRI 442 >gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2] gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2] Length = 439 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 119/457 (26%), Positives = 212/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R +++ + V+ K SL+ +L + ++ +D+ L++ + LR L Sbjct: 11 MKKHLNLRSMTAQAVEQVVEKGQSLSNVLPAM-----QQKVADKDKALLQELCFGVLRTL 65 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ ++ L+ V Q+L+ + +A + VE A K + Sbjct: 66 SQLEWMIQQLMERPMTGKQRTVHYLIMVGFYQLLHTRIPAHAALAETVEGAVVIKRPQ-L 124 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGK-ERVLAISDACISPL 176 L+N +LR+ R + ELL A + P W +R+++ Y + + ++ P+ Sbjct: 125 KGLINGVLRQFQRRQDELLAEFAQSDLRFLHPSWLVKRIKSAYPQQWEAILEANNQRPPM 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDAS 229 ++ + L TG P + +LPGF EG VQDAS Sbjct: 185 WLRVNRNHHTRDAWLDLLTEAGLTGFPHPDYPDAVRLETPAPVHALPGFDEGWVTVQDAS 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V + +LDLC APGGKT ++ V A+DV ++RL ++ NL RL Sbjct: 245 AQGCVNYLLPEDGEQILDLCCAPGGKTTHILEVAPLANVMAVDVDEKRLSRVYDNLKRLG 304 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 305 MKAT-VKQGDGRYPQQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 363 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L S +K GG +V++ CS+ +++++ + L +P V ++ Sbjct: 364 AEILNATWSHLKSGGTLVYATCSILPEENQQQIAAFLARTPDAV--------------LS 409 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE P + + DGFF L + Sbjct: 410 ETGTPEK-----PG--RQNLPGAEDGDGFFYAKLIKK 439 >gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586] gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586] Length = 431 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 128/459 (27%), Positives = 210/459 (45%), Gaps = 44/459 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ L V+ + SL+ LL D +S+RD+ L++ I LR L Sbjct: 1 MKSTYNLRSIAATTLLQVVEQGQSLSQLLPALQRD-----ISERDRGLLQEICFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P++D L ++ L K+ L LL V + Q+++ + +A + V A K + Sbjct: 56 PQLDWYLRQLMAKPLTGKQKVLHYLLMVGLYQLIHTRIPPHAALAETVNGAVALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N + +R + LQ P+W +RL+ Y + I + P+ Sbjct: 115 KGLINGVLRQFQREQEALQQRLQNNPARYSHPDWLLQRLKKAYPGQWEQIIDANNQHPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + E + L + P ++ LPGF +G VQDAS Sbjct: 175 WLRVNRRHHTREAYLALLQEKGIEAHPHAHYPDAIRLSTPCAVNVLPGFEKGFVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A + ++ +LDLCAAPGGKT ++ A+V A+DV ++RL+++R NL RL+ Sbjct: 235 AQGCIHWLSPQDHEDILDLCAAPGGKTTHILEAAPHARVLAVDVDEQRLKRVRENLQRLN 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+AE + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHAE-VKCGDGRTPTQWCGDKCFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELASLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L +K GG +V++ CS+ +++ + + L+ + + A Sbjct: 354 NTILEAIWPRLKNGGTLVYATCSVLPEENCQQIADFLQRHADAMLVDTGTPASP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I++ P + DGFF L + Q Sbjct: 408 -------GIQMLP--------AAEDGDGFFYAKLVKSGQ 431 >gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. MG1655] gi|89110722|ref|AP_004502.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. W3110] gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS] gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739] gi|170082809|ref|YP_001732129.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 53638] gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 101-1] gi|238902379|ref|YP_002928175.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli BW2952] gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038449|ref|ZP_04872505.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp. 1_1_43] gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606] gi|256025984|ref|ZP_05439849.1| 16S rRNA methyltransferase B [Escherichia sp. 4_1_40B] gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 187-1] gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 116-1] gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 175-1] gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 196-1] gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 146-1] gi|307139971|ref|ZP_07499327.1| 16S rRNA methyltransferase B [Escherichia coli H736] gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1827-70] gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H736] gi|1169715|sp|P36929|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493247|sp|B1X6E1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493248|sp|A8A593|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493250|sp|B1IQ11|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|259495485|sp|C4ZUE3|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65 A Resolution gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655] gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. MG1655] gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K12 substr. W3110] gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli HS] gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739] gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli str. K-12 substr. DH10B] gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 53638] gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 101-1] gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp. 1_1_43] gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli BW2952] gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)] gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli B str. REL606] gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli BL21(DE3)] gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1] gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 196-1] gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 175-1] gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 116-1] gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 187-1] gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 146-1] gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli ETEC H10407] gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 1827-70] gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1] gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520] gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli E482] gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H489] gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA007] gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H736] gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli UMNK88] Length = 429 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-44] gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-44] Length = 431 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 112/448 (25%), Positives = 196/448 (43%), Gaps = 40/448 (8%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 V + LL+ S + ++D L+ IV T++ +D L L + Sbjct: 2 QVEKSGAYSNLLLNNLIEKS---EIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE 58 Query: 77 RKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE- 134 ++ LLR+S+ Q++YLD V + AV+ AVE AKR + ++ A +VN +LR + RE Sbjct: 59 ---AWVKVLLRLSLYQMIYLDRVPERAVIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREG 114 Query: 135 ------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + ++R+A PEW + + YG E + + + P V D T Sbjct: 115 VPSVEEIQDPVKRLAVAMSHPEWLVQEWVSAYGLETAQKMCEVNMLPPVSAARVNVDKAT 174 Query: 189 WAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + A ++ ++ F +G +QD S+ + + Sbjct: 175 VEEAISLLENEGIQAKYGDLSEDAIQIEKGNVAHTEAFQKGFLSIQDESSMLVARALAPA 234 Query: 241 NNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLD CAAPGGKT + +V +LD+ ++ ++ RL L + +D Sbjct: 235 EGDKVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHPHKVRLIQQQAKRLGLENVETKALD 294 Query: 298 AFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 A + + FD +LVDAPCS G IRR PD+ ++ D + + Q +L + Sbjct: 295 ARKVEEHFANESFDKILVDAPCSGFGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPL 354 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +K GG +V+S C+++K ++E+V+++ L+ P E + + + EG ++ Sbjct: 355 LKTGGRLVYSTCTIEKIENEQVIEQFLQEHP---EFEWDTTMKGRMPEKLHPYINEGQVQ 411 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 I P DGF+ LR+ + Sbjct: 412 ILPHYFA--------TDGFYIACLRKKV 431 >gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 3431] Length = 429 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 213/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176 L+N +LR+ R++ E + P W +RL+ Y K+ + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPKQWQSIVEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + ++W L+ + P + +LPGF +G VQDAS Sbjct: 175 WLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 354 SEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri MJ11] Length = 451 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 200/452 (44%), Gaps = 43/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L A + RDQ L++ I LRFLPR++ Sbjct: 26 MNVRAAAAKVIYQVVDQGHSLSSALPK-----AQSEIKPRDQALLQEICYGVLRFLPRLE 80 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +V ++ L K+ L+ V + Q+ ++ + +A V VE K K + L+ Sbjct: 81 SVAQSLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKNLKGPK-LRGLI 139 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R + E + +G P W + L+ Y + + ++ +P+++ Sbjct: 140 NAVLRNYQRSQEELDAKSVSHDSGKYGHPGWLLKMLQQAYPEQWETIVEANNSKAPMWLR 199 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + L + L + + +LPGF +G VQDA+A + Sbjct: 200 VNSQHHTRDEYIALLEKEEISVTPHSQATDALLLDKARDVYTLPGFEQGWVSVQDAAAQL 259 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + N +LD CAAPGGKTA V A+D + RL+++ NL+RL+L A Sbjct: 260 SAEYLQPQNGELILDCCAAPGGKTAHILERTQDTNVVAIDCDETRLKRVYENLERLNLKA 319 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ Sbjct: 320 QVICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIKALAELQSEIF 379 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ ++ + V+ L + + + Sbjct: 380 DAMWLQLKSGGTMVYATCSITPLENCDQVKAFLARTSDATLIDNTDPEKP---------- 429 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L++ Sbjct: 430 ---GRQILPG--------EENMDGFYYAVLQK 450 >gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1012] gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 1012] gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii ATCC 9905] gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella dysenteriae 155-74] Length = 429 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429 >gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri CDC 796-83] Length = 429 Score = 267 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IR HPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 EDL933] gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4113] gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4401] gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4501] gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4486] gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4196] gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4076] gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC869] gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC508] gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024] gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4206] gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4045] gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4042] gi|209396232|ref|YP_002272745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4115] gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. TW14588] gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. TW14359] gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|46396973|sp|Q8XEE5|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493246|sp|B5YT08|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4196] gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4113] gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4076] gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4401] gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4486] gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4501] gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC869] gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC508] gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4206] gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4045] gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4042] gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC4115] gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli] gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli] gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli] gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. TW14588] gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. EC1212] gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101] gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. 1044] gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli O157:H7 str. 1125] Length = 429 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ + + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + +TW L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|83945706|ref|ZP_00958051.1| rRNA methyltransferase RsmB [Oceanicaulis alexandrii HTCC2633] gi|83850907|gb|EAP88767.1| rRNA methyltransferase RsmB [Oceanicaulis alexandrii HTCC2633] Length = 450 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 151/441 (34%), Positives = 235/441 (53%), Gaps = 14/441 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + R V+ + V+ K + L L G ++ + RD+ RAI + +R Sbjct: 21 TKNLMPRAVALGAVEGVLAKAVPLDGALA---GRPEWKRMEPRDRAFARAIASAVIRRPI 77 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +DA L VL LP ++ +LR A+ L LD +A VD V +D+ F Sbjct: 78 ALDAALMQVLDKPLPDEEVRAHLILRCGAAERLILDTPAHAAVDAWVSLMAQDRHTARFK 137 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 L N++LRRV + + + +P+W ER YG+ AI+ A P +DLT Sbjct: 138 NLANAVLRRVVDQGKDAFLDSDPLEDLPDWLAERWVETYGEPTARAIAIARSVPPTLDLT 197 Query: 182 VKF--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 K D +++A ++ A +L TG IR + ++ LPGF G WWVQDA+A++P +L G Sbjct: 198 AKPGFDAQSFAEEIGASVLETGTIR-RPDIGAVDGLPGFENGDWWVQDAAAALPAKLLGV 256 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +V DLCAAPGGKT QL +GA V A+D S +RL++L NL+R L AE + D Sbjct: 257 KAGETVADLCAAPGGKTLQLAATGASVIAVDASPKRLKRLEDNLERTKLKAEIV-AADVA 315 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D+ + DA+L+DAPCS+TGT+RR PD W + DI A QR+LL + +KPGG Sbjct: 316 DWTAPEPLDAILLDAPCSATGTLRRRPDAAWAKQPGDIANLADIQRRLLDASFNQLKPGG 375 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL++++ E+ ++ L+ +P L P+ + + A++P+G +R PD+ Sbjct: 376 RLVYCTCSLEREEGEDQIEAFLKRTP-DARLDPVTADELPG--LKAAITPDGAVRTRPDL 432 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + G+DGF+ + + Sbjct: 433 WSE----RGGLDGFYIARIVK 449 >gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103] gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103] Length = 433 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 136/461 (29%), Positives = 216/461 (46%), Gaps = 46/461 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R +S+ L+ V+ K SL L +A + LS +D LV+ I LR L Sbjct: 1 MTKSTNLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDAALVQEICFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++A++ ++ L K+ +L L+ V + Q+LY V +A + V A+ K + Sbjct: 56 PQLEALIGKLMERPLTGKQRTLHFLIMVGLYQLLYTRVPAHAALAETVAGAEVLKR-ANL 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ +Q + P W RL+ + E+ I +A Sbjct: 115 KGLINGVLRQFQRQQEALLASIQDGPQRHLHPGWLLNRLQQAWP-EQWQQIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W +L A + P + LPGF +G + VQD Sbjct: 174 MWLRVNRQHHSRDSWLARLTAEEKSAAVAQDVPEALRLTAPAPVTLLPGFEQGWFTVQDL 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA L N +LDLCAAPGGKT I A+V A+DV +RL+++ NL RL Sbjct: 234 SAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLTRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + AE + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMTAE-VKQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L +KPGG ++++ CS+ +++ + + + E V L+ A Sbjct: 353 QREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERH-ADAEAVSLSGA------- 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P ++ P + G DGFF L + P Sbjct: 405 -----PLNGWQVFP--------EAEGGDGFFYAKLVKRTGP 432 >gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61] Length = 429 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ ++ V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQVVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ + + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYGNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94] gi|224493269|sp|B2U2Q6|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii CDC 3083-94] Length = 429 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 210/458 (45%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N+ +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNSEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IR HPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + EL + Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRT-ADAELCETGAPEQPG--- 408 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + DGFF L + Sbjct: 409 -----------------KQNLPGAEEGDGFFYAKLIKK 429 >gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2002017] Length = 436 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 8 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 62 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 63 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 121 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I++A Sbjct: 122 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 180 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 181 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 240 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 241 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKRL 300 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 301 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 359 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 360 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 405 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 406 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 436 >gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli M863] gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli STEC_7v] Length = 429 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 117/457 (25%), Positives = 212/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ E + P W +RL+ Y ++ I + P+ Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + ++W L+ + P + LPGF EG VQDAS Sbjct: 175 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 354 SEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase B [Shigella flexneri 5 str. 8401] gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 436 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 8 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 62 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 63 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 121 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I++A Sbjct: 122 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 180 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 181 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 240 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 241 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 300 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 301 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 359 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 360 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 405 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 406 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 436 >gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC 29799] gi|150272972|gb|EDN00129.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC 29799] Length = 447 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 99/457 (21%), Positives = 180/457 (39%), Gaps = 42/457 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + LS R+ L + L RD L + L+ +D Sbjct: 8 ARETALLALSACERQGAWSDGFLKKTLRE---AGLDSRDAALATRLCFGVLQNRLLLDFY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + + + ++ LR+ V Q+ ++ + A V+ +VE K+ +N A +VN Sbjct: 65 IGKFSTTRPEKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHCKNPRAAGMVN 124 Query: 126 SILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR VSR + ++ P W G E A+ +A Sbjct: 125 GVLRNVSRNIDRLPVIESGSREEYLSIRYSHPLWLVREFTALLGSEEAEALLEADNGQPP 184 Query: 178 IDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 I + T L + + ++ L F EG++++QD Sbjct: 185 ITAQINTCRATMEQTLERLAEAGVEAQPHPWLADCLVLSGTGNLEHLTAFREGLFYIQDP 244 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR 285 +A + V++ + VLD CAAPGGKT + ++ + D+ + + ++ +R Sbjct: 245 AARLAVEVADPKPGMKVLDACAAPGGKTFASAIRMGGEGEIQSCDIHAHKEKLIQAGAER 304 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L MD + P + FD V+ D PCS G IR+ PD+ + +D + + Sbjct: 305 LGFNCIKTAVMDGKKHRPAFENAFDVVIADVPCSGLGIIRKKPDIRY-KDPEPLEGLPAV 363 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L ++VKPGG+++++ C+L ++++ +VV+ L + + + Sbjct: 364 QSAILDNVATYVKPGGVLLYATCTLLERENGDVVRGFLDRNKDF-------TLEKFQLPE 416 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G P G DGFF LRR Sbjct: 417 PLGRADNGMFTFWPQ--------RHGTDGFFIAKLRR 445 >gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii DSM 20583] gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii DSM 20583] Length = 454 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 105/466 (22%), Positives = 214/466 (45%), Gaps = 38/466 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +N R + +L + ++ ++ ++ L ++++ + + TL + Sbjct: 1 MVNKVNLRELVLGILLEINKEGQHSHLVIRSTLE--KYQYLEKQERAFLTRVCEGTLEYK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 R+D +LD + + K ++++LR SV Q+LY+D V D AV D AV+ A++ K + Sbjct: 59 LRLDYILDQYSSVPVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLARK-KGFYN 117 Query: 120 FAKLVNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR+V+RE + ++ + +P+W E+ YG E+ + +A Sbjct: 118 LTGFVNGVLRKVAREYGSIHFPEKDQPVEYLSVLYSMPKWLVEKFLGEYGFEKTEKMLEA 177 Query: 172 CISPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGV 222 ++ + ++ + L+++ + + + +L F G Sbjct: 178 FLTEKPTTIRIRQHLVDKGAVLDSLKRQKVTVEPAPYVENAYYIKDYDYLPALEAFRMGN 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 VQD S+ + ++ V+DLCAAPGGKT + ++ A D+S+ + + + Sbjct: 238 IQVQDVSSMLVGEVADPKEGDYVIDLCAAPGGKTLCIADKLKGTGRIDARDISRTKTDLI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R N R + + E DA + + D ++ D PCS G I + D+ + + I Sbjct: 298 RENAIRQNFLNVVVTEKDATQLDSESFEKADILIADVPCSGLGVIGKKTDIKYNITQNGI 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + QRK+L Q ++VKPGG +++S C+++K+++ E V+ + + P +E + Sbjct: 358 AELVNLQRKILEQASTYVKPGGTLIYSTCTINKEENIENVRWFVENYPYELESID----D 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + ++ + EG++++ DGFF L+R + Sbjct: 414 YLCEELRSDTTKEGYLQLL--------SGVHDCDGFFIARLKRKTE 451 >gi|224493306|sp|Q0T014|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB Length = 429 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I++A Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429 >gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T] gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 301] gi|46396790|sp|Q7UBD3|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T] gi|56383861|gb|AAN44783.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2a str. 2457T] gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-671] gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 4343-70] gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2930-71] gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-218] gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-304] Length = 429 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I++A Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429 >gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5] gi|224493251|sp|B1LGP5|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli SMS-3-5] Length = 429 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V + W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDRWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli EC4100B] Length = 429 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LP F +G VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPSFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea ananatis AJ13355] Length = 433 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 136/461 (29%), Positives = 216/461 (46%), Gaps = 46/461 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R +S+ L+ V+ K SL L +A + LS +D LV+ I LR L Sbjct: 1 MTKSTNLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDAALVQEICFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++A++ ++ L K+ +L L+ V + Q+LY V +A + V A+ K + Sbjct: 56 PQLEALIGKLMERPLTGKQRTLHFLIMVGLYQLLYTRVPAHAALAETVAGAEVLKR-ANL 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ +Q + P W RL+ + E+ I +A Sbjct: 115 KGLINGVLRQFQRQQEALLASIQDGPQRHLHPGWLLNRLQQAWP-EQWQQIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W +L A + P + LPGF +G + VQD Sbjct: 174 MWLRVNRQHHSRDSWLARLIAEEKSAAVAQDVPEALRLTAPAPVTLLPGFEQGWFTVQDL 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA L N +LDLCAAPGGKT I A+V A+DV +RL+++ NL RL Sbjct: 234 SAQRCALLLEPKNGEQILDLCAAPGGKTTHILEIAPEAQVLAVDVDAQRLKRVNENLTRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + AE + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMTAE-VKQGDGRTPQQWCDQRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAAL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L +KPGG ++++ CS+ +++ + + + E V L+ A Sbjct: 353 QREILDATWPLLKPGGTMIYATCSVLPDENQRQISEFIERH-ADAEAVSLSGA------- 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P ++ P + G DGFF L + P Sbjct: 405 -----PLNGWQVFP--------EAEGGDGFFYAKLVKRTGP 432 >gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568] gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568] Length = 429 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 129/457 (28%), Positives = 219/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ + SL+ +L S + +S +D+ L++ + TLR L Sbjct: 1 MKNNYNLRSIAAIAIGQVLDQGQSLSTVLP-----SLQKTISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ +L LL V + Q+LY + +AV+ VE A K + Sbjct: 56 PQLEWCIQQLMAKPMTGKQRTLHYLLMVGLYQLLYTRIPAHAVLAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ ELLQR A + P W +R++ Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQEELLQRAANNDSRYLHPSWLLKRIQQAYPAQWEQIIDANNQKPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + E + + + P ++ LPGFA+G VQDAS Sbjct: 175 WLRVNRLHHTREDYLQLMEQAGIAAEPHAEYRDAVRLLAPCAVTDLPGFADGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ A V A+D+ ++RL++++ NL RL Sbjct: 235 AQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLKRVKENLQRLR 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+AE + + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHAE-VKQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ ++ E V L+ LV + Sbjct: 354 AEIIEAIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRH-ADARLVETGNQQQPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF L ++ Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIKM 429 >gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Vibrio fischeri ES114] Length = 426 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 200/453 (44%), Gaps = 45/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L A + RDQ L++ I LRFLPR++ Sbjct: 1 MNVRAAAAKVIYQVVDQGHSLSSALPK-----AQSEIKPRDQALLQEICYGVLRFLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +V ++ L K+ L+ V + Q+ ++ + +A V VE K K + L+ Sbjct: 56 SVAQSLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKNLKGPK-LRGLI 114 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R + E + +G P W + L+ Y E+ I +A S + L Sbjct: 115 NAVLRNYQRSQEELDAKSVSHDSGKYGHPGWLLKMLQQAYP-EQWENIVEANNSKAPMWL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231 V + + L + L + + +LPGF +G VQDA+A Sbjct: 174 RVNSQHHTRDEYIALLEKEEISVTPHSQATDALLLDKARDVYTLPGFEQGWVSVQDAAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + N +LD CAAPGGKTA V A+D + RL+++ NL+RL+L Sbjct: 234 LSAEYLQPQNGELILDCCAAPGGKTAHILERTQDTSVVAIDCDETRLKRVYENLERLNLK 293 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A ++ + FD +L+DAPCS+TG IRRHPD+ W R ++DI A Q ++ Sbjct: 294 AQVICGDARHPEEWWKGEQFDRILLDAPCSATGVIRRHPDIKWLRRSEDIKALAELQSEI 353 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 +K GG +V++ CS+ ++ + V+ L + + + Sbjct: 354 FDAMWLQLKSGGTMVYATCSITPLENCDQVKAFLARTSDATLIDNTDPEKP--------- 404 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L++ Sbjct: 405 ----GRQILPG--------EENMDGFYYAVLQK 425 >gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6] gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus CMCP6] Length = 426 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 121/454 (26%), Positives = 209/454 (46%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ + SL+ L A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYQVVDRGNSLSTALPE-----AQQSIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SIAGKLMDKPLKGKQRVFHHLILVGLYQLGHMRIPAHAAVGETVEGAQALKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR RE+ + AG + P W + L++ Y + + + ++ +P+++ Sbjct: 115 NAVLRNYQREQQALDEFSVSHNAGKYVHPSWLLKILQDAYPEQWQTIVEANNNKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + D + + L + + P + SLPGF +G VQDA+A + Sbjct: 175 VNHAHHDRDEYLQLLKNANIDSTLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA VS +V ALD ++RL+++ NL RL+L A Sbjct: 235 SFNYLQPKDGELILDCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ Sbjct: 295 KVICGDARNPEQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ ++ E V+ L + + + Sbjct: 355 DAMWAQLKPGGTLVYATCSITPMENVEQVKAFLARTSAA--------------QLVGSER 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 ENPGRQIIPG--------EEDMDGFYYAVLVKQA 426 >gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio metschnikovii CIP 69.14] Length = 426 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 121/454 (26%), Positives = 204/454 (44%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ + L KK L+ V + Q+ Y+ + +A V VE A + + L+ Sbjct: 56 SIAGQLMDNPLKGKKRVFHHLILVGLYQLSYMRIPSHAAVAETVE-ATKTLRGPSLSGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG+ P W + L+ Y ++ I +P+++ Sbjct: 115 NAVLRSYLRDQEALDAFAVSHNAGLYAHPSWLLKLLQEAYPQQWQTIIEANNSKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + E + L+ + P + LPGF G VQDA+A + Sbjct: 175 VNRQHHSREAYLALLDNEQIEYTVHPQAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA +V A+D RLE++ NL+RL L A Sbjct: 235 AIDYLQPQDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDAARLERVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R DI A Q ++L Sbjct: 295 DVICGDARYPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ + ++ L +P +L+ + Sbjct: 355 DAMWKQLKIGGTLVYATCSITPQENSQQIKAFLARTP-KAQLIDSDPEQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ LR+ Sbjct: 404 ---GRQILPG--------EQDMDGFYYAVLRKQA 426 >gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073] gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972] gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 45-1] gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 185-1] gi|46396925|sp|Q8FD12|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073] gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972] gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 185-1] gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 45-1] gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972] gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 153-1] Length = 429 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAIEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQSDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQDELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + +LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVQLETPAPVHALPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L S +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 429 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 122/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ ++ V+ + SL+ LL + R +S +D+ L++ + LR L Sbjct: 1 MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVY-----QREVSDKDRALLQELCFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ +L L+ V + Q+ Y + +A + VE K + Sbjct: 56 PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGTVSLKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176 L+N + +R E I+ + + P W R+E Y + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQEELIQREATHSSHYLHPSWLLTRIERAYPHHWQNIVEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + E + + L+ + P ++ LPGF++G VQDAS Sbjct: 175 WLRVNRLHHTREAYLNLLDQEGIEAFPHAEYNDAIRLAAPCAVDQLPGFSQGWATVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V + +LDLCAAPGGKT ++ + V A+DV + RL +++ NL RL Sbjct: 235 AQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLRLQ 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++AE + + D +C ++FD VL+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 295 MHAE-VKQGDGRYPDSWCEGRVFDRVLLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L +K GG +V++ CS+ Q++ + V L LV + Sbjct: 354 KEILDAIWPHLKTGGTLVYATCSILPQENTQQVADFLTRH-TDATLVDTGTREMPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGFF L + Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428 >gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. Sakai] gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai] Length = 429 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKNQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ + + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + +TW L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDTWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei ATCC 43380] gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei ATCC 43380] Length = 429 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 122/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----NKSISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNESHYLHPSWLLARIKQAYPDQWQQILEANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + + P S+ LPGF G VQDAS Sbjct: 175 WLRVSRLHHSRSEYLELLKQADIEALPHDVYPDAVRLITPCSVNDLPGFDLGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLSPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLK 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A D+ D ++C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHA-DVRVGDGRTPDEWCGNQQFDRILLDAPCSATGVIRRHPDIKWLRRNSDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ ELV + Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRH-SEAELVETGTTSAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIK 428 >gi|291284647|ref|YP_003501465.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli] gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli] gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Escherichia coli O55:H7 str. CB9615] gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89] gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687] gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA 5905] Length = 429 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ + + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKSMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri ATCC 29473] gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri ATCC 29473] Length = 429 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 113/455 (24%), Positives = 203/455 (44%), Gaps = 42/455 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ K SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDKGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE--QAKRDKENR 118 P+++ + ++ + K+ L+ V + Q+LY + +A + VE A + + + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLLYTRIPPHAALAETVEGTVALKRPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPLY 177 V +R + +E + P W R++ Y + I + P++ Sbjct: 116 GLVNGVLRQFQRQQVDLLERAANNESRYLHPSWLLARIKKAYPDKWQQIIDANNQKPPMW 175 Query: 178 IDL-TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASA 230 + + + + + + P ++ LPGF +G VQDASA Sbjct: 176 LRVSRLHHSRADYLELMKQAGIEAEPHTEYSDAVRLITPCAVNDLPGFTQGWVTVQDASA 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288 V L N +LDLCAAPGGKT ++ + V A+D+ ++RL +++ NL RL L Sbjct: 236 QGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDEQRLSRVKENLQRLQL 295 Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 +A + D +C +LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 296 HAT-VTVGDGRAPDKWCGNQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQS 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +K G++V++ CS+ +++++ + L+ P + A Sbjct: 355 EILEAIWPKLKKDGVMVYATCSILPEENQQQIANFLQRHPEARLVETGTPAQPG------ 408 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ---------------KQNLPHPEDGDGFFYAKLIK 428 >gi|291549490|emb|CBL25752.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus torques L2-14] Length = 463 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 113/477 (23%), Positives = 196/477 (41%), Gaps = 49/477 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R V +L + +L S ++ L +R++ + +V TL + Sbjct: 1 MGKQINEREVVLEILMEITENGAYSHKILGDVL--SKYQYLEKRERAFITRVVEGTLEHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +L+ + + + + K ++ LLR SV Q+ Y+D V D+AV AV+ A R K Sbjct: 59 IEIDYILNQISKTKVKKMKPVIRNLLRSSVYQLKYMDSVPDHAVCSEAVKLAVR-KGFSG 117 Query: 120 FAKLVNSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR V R+ E+ + +PEW + YG+E ++ Sbjct: 118 LRGYVNGVLRNVVRKMDEIEYPKEDVQRLSVKYSVPEWILSLWKKEYGEEITEKMAADFQ 177 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWW 224 I + + E KL A + + L F EG++ Sbjct: 178 KEKPITIRCCMNRVTPEVLKEKLEAEGAKVEAHPYLPYAFYLSDYDYLEGLESFQEGLFA 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------LIVSGAKVT 267 VQD S+ +L V+D+CAAPGGK+ +V Sbjct: 238 VQDISSMFVGELADLKAGDHVIDVCAAPGGKSLHVAEKLQLADEVAARENGTEEKTGRVE 297 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRH 325 A D+++ + + + N+DR L + DA + D V+ D PCS G + + Sbjct: 298 ARDLTEYKTDLIWQNIDRSGLGNICAVCKDASVFDEYDKETADLVIADLPCSGLGVLGKK 357 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+ + +D+ + A QRK+L + VK GG +++S C+++ ++ + V L+ P Sbjct: 358 PDLKYRVQPEDLEELADLQRKILTCAQAIVKDGGTLLYSTCTVNPGENMDNVHWFLKEYP 417 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 EL + K ++ + +G I+ P + DGFF L++ Sbjct: 418 -QFELDDITENLCK--ELRSDVIEKGCIQFFPGV--------HDCDGFFIARLKKKA 463 >gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola] gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis Angola] Length = 435 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 207/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 7 MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 61 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 62 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 120 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++E + P W R++ Y + + + P+ Sbjct: 121 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 180 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + L + + P ++ LPGF G VQDAS Sbjct: 181 WLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 240 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 241 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 300 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 301 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ P ++ Sbjct: 360 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P DGFF + + Sbjct: 407 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 435 >gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar Microtus str. 91001] Length = 435 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 7 MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 61 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 62 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 120 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++E + P W R++ Y + + + P+ Sbjct: 121 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 180 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + + P ++ LPGF G VQDAS Sbjct: 181 WLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 240 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 241 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 300 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 301 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ P ++ Sbjct: 360 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P DGFF + + Sbjct: 407 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 435 >gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii 5216-82] Length = 429 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 116/458 (25%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTHIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTQHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYANLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG +RRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVVRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429 >gi|224493303|sp|A9R925|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB Length = 429 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 207/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++E + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + L + + P ++ LPGF G VQDAS Sbjct: 175 WLRVNRQHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ P ++ Sbjct: 354 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 400 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P DGFF + + Sbjct: 401 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 429 >gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB] gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB] Length = 433 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 134/458 (29%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R +S+ L+ V+ K SL L +A + LS +D LV+ I LR L Sbjct: 1 MTKSINLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDSALVQEICFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++A++ ++ L K+ L L+ V + Q+ Y V +A + V A+ K Sbjct: 56 PQLEALIGKLMARPLTGKQRVLHYLIMVGLYQLEYTRVPAHAALAETVAGAEVLKRT-SL 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E +Q + P W +RL++ + E+ I +A Sbjct: 115 KGLLNGVLRQFQRQREELLASIQDGPQRYLHPGWLLKRLQHAWP-EQWQQIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V + + W L P + LPGF +G VQD Sbjct: 174 MWLRVNQQHHERDAWLALLTESGRNAQPADDVPDALRLDAPAPVSQLPGFGQGWVTVQDL 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA L N +LDLCAAPGGKT I A+V A+DV +RL+++ NL RL Sbjct: 234 SAQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A D+ + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKA-DVKQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +KPGG ++++ CS+ +++ + + L+ + VPL A Sbjct: 353 QSEILNAVWPHLKPGGTLIYATCSILPEENHQQIDAFLQRQH-DAQAVPLRDA------- 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 P +++ P + G DGFF L + Sbjct: 405 -----PANGLQVFPQ--------AEGGDGFFYAKLIKK 429 >gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase B [Yersinia pestis KIM 10] gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 32953] gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua] gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516] gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F] gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125] gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758] gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase B [Yersinia pestis biovar Microtus str. 91001] gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. F1991016] gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. E1979001] gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1] gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII] gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+] gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase B [Yersinia pestis CO92] gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A] gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516] gi|46396984|sp|Q8ZJ81|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|81638254|sp|Q664V2|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122979388|sp|Q1C2X7|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122979880|sp|Q1CCX4|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493292|sp|A7FNK4|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493293|sp|B2K506|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493294|sp|A4TH21|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|224493295|sp|B1JJH6|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM 10] gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516] gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua] gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F] gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125] gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia pseudotuberculosis IP 31758] gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. F1991016] gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. E1979001] gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII] gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+] gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516] gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A] gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 429 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++E + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + + P ++ LPGF G VQDAS Sbjct: 175 WLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ P ++ Sbjct: 354 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 400 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P DGFF + + Sbjct: 401 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 429 >gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345] gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345] Length = 426 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 201/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ ++ V+ K ISL+ L + S +D+ L+ + +R LP++D Sbjct: 1 MNLRALAAKVVFQVLEKGISLSVALPDQQRHLD----SGKDKALLAELCYGVMRHLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + + K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KQVSDCMSKQMKGKQRIVHQLLLIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ L + P W +RL++ Y I + P + Sbjct: 116 NGVLRNIQRQEKPLATDNDTLAYNTPAWIIKRLKDAYPDNWQSVIEQSHERPPMWLRNNQ 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 ET+ L A + L P ++ LPGF G VQD +A L Sbjct: 176 QSQTRETYLLALAGLEIEAQAGNSPDSILLSSPRDVMQLPGFETGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + VLD CAAPGGKT + K+ A+D +RLE+++ NLDRL L AE + Sbjct: 236 LAPQGDELVLDACAAPGGKTCHLLELAPNIKLVAVDFDAKRLERVQQNLDRLSLKAELVH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q ++ Sbjct: 296 GDAANIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNNDIEELAQLQSQIFDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++F+ CS+ Q++++ V L +P LVP+ Sbjct: 356 KWLKPGGTLLFATCSILPQENKDQVSAFLARTPDAT-LVPIEEQANPD------------ 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ +I MDGF+ L + Sbjct: 403 -----DIGWQIVPGQDNMDGFYYARLVK 425 >gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia frederiksenii ATCC 33641] gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia frederiksenii ATCC 33641] Length = 429 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGLHK-----SISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKQTYPAQWQQILDANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + + P ++ LPGF G VQDAS Sbjct: 175 WLRVSRLHHSRNEYLDLLKQANIDALPHDVYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKTHVLAVDIDEQRLNRVKENLQRLK 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LNAV-VRVGDGRTPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ ELV +A Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQITAFLQRH-DEAELVETGTASAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIK 428 >gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum D str. 1873] gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum D str. 1873] Length = 443 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 204/457 (44%), Gaps = 40/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR + +L V K +L + + ++++D+ L+ IV T+++ IDA Sbjct: 3 NARKICIDILEMVFNKNAYSNIVLRQSLNN---QKINEKDKGLITEIVYGTIKYKYTIDA 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L+ L + +LR+++ QI YLD + ++A V+ AV AK+ K R +KLV Sbjct: 60 ILNTYLKKGTKSVDSYILNILRITIYQIKYLDKIPNFAAVNEAVNIAKKHKSIRE-SKLV 118 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R ++ +W + N Y +E I + Sbjct: 119 NGVLRNYLRNLDKVYYNKNSVVERLCFEYSCEKWLVKMFINQYNEEITEKILNGLNERPA 178 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + N + +SI S P F +G VQD Sbjct: 179 VTVRVNNLKTDYDEAFNKLEEYGYSIEEGYVCPEAIIINKGKSIESNPLFEDGKVTVQDE 238 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + VLDLC+APGGKT + + + KV A D+ + +L ++ N R Sbjct: 239 SAMLVAATMDIKEGSLVLDLCSAPGGKTTHISEIMNNTGKVMAFDIHENKLSLVKDNAKR 298 Query: 286 LHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + ++DA + K DAVL+D PCS G IR+ P++ +T++ + + Sbjct: 299 LGINNIECSKLDASKFNEKLKETADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVNI 358 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q++++ +VK GG +++S C+++K+++E+ + +R+ P + ++ +D Sbjct: 359 QKEIMKNAARYVKVGGTLLYSTCTINKKENEQNIDWFIRNFPEYT----VEPIFYGEMD- 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + I P+ MDGFF L+R Sbjct: 414 NIIYNENRTVTILPNKY---------MDGFFIAKLKR 441 >gi|295687552|ref|YP_003591245.1| sun protein [Caulobacter segnis ATCC 21756] gi|295429455|gb|ADG08627.1| sun protein [Caulobacter segnis ATCC 21756] Length = 431 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 145/439 (33%), Positives = 216/439 (49%), Gaps = 19/439 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR + L+ + +R L + FR L R++ RA+ LR L I Sbjct: 8 GLPAREAALTLIDAALSRRGGLDEA----ASANGFRFLEPRERAFARALAMAVLRHLGPI 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D L L + P + + LLR+ AQ +L+V +A V +VE A +K +R F L Sbjct: 64 DRALAARLQKAPPDR---VMHLLRLGAAQAFHLEVPAFAAVATSVELAGANKASRPFKGL 120 Query: 124 VNSILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 VN++LR + R+ +++ P W R +G+ I+ DL++ Sbjct: 121 VNAVLRGLLRDAPTPDSLGDDPTLLAPPWLYSRWVAAFGEATAREIAGQIALEPATDLSL 180 Query: 183 KFDIETWAHKLNAVMLP-TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 K + + A GG + + PGF +G WWVQDA+A++P +L Sbjct: 181 KPNADAAALAEALEGEVLPGGTLRLRRKGDVAAWPGFEDGSWWVQDAAAAVPARLLDVKT 240 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +VLDLCAAPGGKT QL +GA V ALD S RL++L NL R L A ++ D + Sbjct: 241 GEAVLDLCAAPGGKTLQLAAAGADVVALDRSAARLKRLEENLVRTGLSA-QVVVADGAAW 299 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDA+L+DAPCS+TGT RRHPDVLW D+ A Q ++L +KPG + Sbjct: 300 DDARTFDAILLDAPCSATGTFRRHPDVLWAARPGDVASLANVQARILDSAAGRLKPGARL 359 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL+ ++ E V+ L P +EL P+ + + +L+ G +R+ P L+ Sbjct: 360 VYCVCSLEPEEGEAQVEAFLARRP-DMELDPIQPGEAGAPE--ASLTARGTLRLLPHQLD 416 Query: 422 KIDGVSSGMDGFFAVALRR 440 G DGFFA R+ Sbjct: 417 ------GGQDGFFAARFRK 429 >gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H299] gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli H299] Length = 429 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDACYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. IP275] gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. B42003004] gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis KIM D27] gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003] gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. IP275] gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. B42003004] gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004] gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038] gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis KIM D27] gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003] Length = 431 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 208/457 (45%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 3 MKNTYNLRSIAAKAISQVLDQGQSLSAVLPEL-----QKNISDKDRALLQELCFGTLRVL 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 58 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATVLKRPQ-L 116 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++E + P W R++ Y + + + P+ Sbjct: 117 KGLINGVLRQFQRQQVELLERAVNNDSHYLHPSWLLARIKQAYPAQWQQILDANNQRPPM 176 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + + P ++ LPGF G VQDAS Sbjct: 177 WLRVNRLHHSRSEYLELLTQADINAEPHPIYRDAVRLITPCAVNHLPGFELGWVTVQDAS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 237 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 296 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 297 LQAV-VRVGDGRAPDTWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ P ++ Sbjct: 356 SEIIEAIWPKLKHGGVLVYATCSILPEENQQQIAAFLQRHP-------------EAQLTE 402 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P DGFF + + Sbjct: 403 TGTTAAPGKQNLPH--------PEDGDGFFYAKIIKK 431 >gi|329847341|ref|ZP_08262369.1| nusB family protein [Asticcacaulis biprosthecum C19] gi|328842404|gb|EGF91973.1| nusB family protein [Asticcacaulis biprosthecum C19] Length = 457 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 153/439 (34%), Positives = 223/439 (50%), Gaps = 19/439 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 GMNARL + L+ + KR + S F L+ ++ RA+ + LR L ++ Sbjct: 33 GMNARLAALTLIDAALEKRTGFDEAVTR----SDFLSLNDSERGFARALAMLVLRRLGQL 88 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D V+D + + LLR+ +AQI ++ V D+A V V+ A+R+ R F L Sbjct: 89 DYVIDKKTQKAPNDG---VWALLRIGLAQIGFMQVPDFAAVSTTVKLAEREAHTRPFKGL 145 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 +N+ILR V RE + ++ P+W +R + YG+ I+ DLT K Sbjct: 146 INAILRSVIREGGLNTPLPSRLA--PDWLFQRWKAAYGEPNAEGIALMLTEEPATDLTFK 203 Query: 184 F--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 D+E +L L G L +I G+ +GVWWVQDA+AS+ L G L Sbjct: 204 TAADLERLKDELQGTPLG-GLALRSALRGNIAEWAGYGQGVWWVQDAAASVAAGLLGDLT 262 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 + +DLCAAPGGK Q+I +G V ALD S+ RL+++ NL R L AE ++ DA + Sbjct: 263 GKTAIDLCAAPGGKALQMIAAGGDVIALDRSRNRLKRVEENLVRTGLTAEVVM-GDAETW 321 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDAVL+DAPCS+TGT+RR PDVLW DI K A Q +LL VKPGG + Sbjct: 322 EDTRQFDAVLLDAPCSATGTLRRQPDVLWATRPTDIAKLADVQHRLLDSASGRVKPGGSL 381 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++ CSL++++ E V LR P P ++ +++ +GW+R+ P Sbjct: 382 IYCTCSLEREEGETQVVAFLRRHPDFAIKKPDDATVIALGVPVESVAAQGWLRLLPHH-- 439 Query: 422 KIDGVSSGMDGFFAVALRR 440 G DGFF L R Sbjct: 440 ----RPGGQDGFFIAHLVR 454 >gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae ATCC 35236] Length = 429 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 213/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPEL-----QKNISDKDRALLQELCFGALRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPLTGKQRIFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKQAYPDQWQQILEANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ LPGF G VQDAS Sbjct: 175 WLRVSRLHHSRNEYLELLKQANIDALPHDFYSDAVRLITPCAVNDLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL+ Sbjct: 235 AQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLN 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D ++C + FD +L+DAPCS+TG IRRHPD+ W R DI A Q Sbjct: 295 LHAV-VRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAKLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ ++++ + L+ ELV +A Sbjct: 354 SEIVEAIWPKLKKGGVMVYATCSILPDENQQQIAAFLQRH-SEAELVETGTAVAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLIK 428 >gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271] gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271] Length = 461 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 193/462 (41%), Gaps = 37/462 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + NAR + +L+ +++ + LL + + RD+ L A+VN TL+ Sbjct: 11 SNDHNARRTAVRILTRAEKEKAYVNLLLQRQLRELG----DSRDRQLAAALVNGTLKNRL 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D + L + + + ++ +LR Q+LY+D + A V+ AV+ K + F Sbjct: 67 TLDYAIRRHLKTPMSALPHMVRAILRTGAFQLLYMDRIPAAAAVNEAVKSVKAE--EPKF 124 Query: 121 AKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDA 171 A LVNS+L RV+ E A P+W R +G E + + Sbjct: 125 AGLVNSVLHRVAEVGWEFPWPDQKKEPARYLAVKYSHPQWLAARWLARWGLEETEKLCIS 184 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGV 222 P + E +L + T E ++ L + EG+ Sbjct: 185 NNLPAPTCIRTNTLKISRENLVSRLENEGIQVTLSAKTPEGLFIEDFGALDELLSYQEGL 244 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 + VQD S+ + + G VLD+C APGGKT L + + + D+ +L + Sbjct: 245 FTVQDESSQLVAHILGVKPGERVLDVCCAPGGKTTHLAQLMNNQGTIIGNDLYPAKLSLV 304 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 ++RL + DA + FD VLVDAPCS G IRR D+ W + +I Sbjct: 305 NELVERLGIGIIQTQAGDAGILEGIEGRFDKVLVDAPCSGLGVIRRRADLRWQKSEQEIK 364 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + + Q+K+LL+ FV PGG +V+S C+++ +++ EVV+ P + + Sbjct: 365 ELSEIQKKILLRAADFVAPGGEMVYSTCTIEPEENFEVVKVFRAERPDFSSVSLTGEINF 424 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G +I P + MDGFF RR Sbjct: 425 PVTAGDKKQLAKGVFQILPHLY--------NMDGFFLAKFRR 458 >gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio salmonicida LFI1238] Length = 444 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 43/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L A + RDQ L++ I LRFLPR++ Sbjct: 19 MNVRAAAAKVIYQVVDQGHSLSSALPK-----AQSEIKPRDQALLQEICYGVLRFLPRLE 73 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +V ++ L K+ L+ V + Q+ ++ + +A V VE K K + L+ Sbjct: 74 SVAQSLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKNLKGPK-LRGLI 132 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N +LR R + E + +G P W + L+ Y + + ++ +P+++ Sbjct: 133 NGVLRSYQRSQEELDAKSISHDSGKYGHPGWLLKMLKEAYPTQWESIVEANNSKAPMWLR 192 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + L + L + + +LPGF +G VQDA+A + Sbjct: 193 VNSQHHTRDEYIALLEKEEIAVTPHSQATDALLLDKARDVFTLPGFEKGWVSVQDAAAQL 252 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V+ + +LD CAAPGGKTA V A+D + RL ++ NL+RL+L A Sbjct: 253 SVEYLQPQDGELILDCCAAPGGKTAHILERTKNTNVVAIDCDETRLTRVYENLERLNLEA 312 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R ++DI A Q ++ Sbjct: 313 KVICGDARHPEEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRSEDIKALAELQSEIF 372 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ + V+ L + + + A Sbjct: 373 DAMWLQLKSGGTMVYATCSITPQENGDQVKAFLERTENASLVDNTDPAKP---------- 422 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L++ Sbjct: 423 ---GRQILPG--------EENMDGFYYAVLQK 443 >gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 462 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 110/472 (23%), Positives = 205/472 (43%), Gaps = 46/472 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK ++R ++ + +++ + +L+ G + L +D+ L I TL++ Sbjct: 1 MKIK-SSRELAFVAYTRIIQDQAYSNLVLNQLLGKT---DLLAQDKALASRITYGTLQWQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID L + L + LLR+ QIL+LD V A V+ V+ A R + ++ Sbjct: 57 GLIDYYLKTLSHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNETVKVAHR-RTHKG 115 Query: 120 FAKLVNSILRRVSREKIELL---------QRIAGISIIPEWFKERLENFYGKERVLAISD 170 A VN ILR + R+K ++L ++ P W + + YG ++ ++I D Sbjct: 116 IANFVNGILRNLIRKKDQILLPSRDQDLLNYLSVKYSHPYWMVKLWYDKYGLDKTISIMD 175 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEG 221 S + V +E ++L + L + + + F G Sbjct: 176 QNNSTPEEAIRVNKLLTSLENLKNELEMTGIQSRLSSKIDDALLVDNLGDLNNNTLFNCG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEK 278 + VQD ++ + L +++DLC+APG KT L+ + A+D+ + RL+ Sbjct: 236 YFQVQDINSMVVSHLCDPQQGDNIIDLCSAPGSKTTHLVQLIDGQGSILAVDIHEHRLKL 295 Query: 279 LRCNLDRLHLYAEDIIEMD----------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 ++ RL + ++ + D + K FD L+DAPCS GT+R+ P++ Sbjct: 296 VKEACRRLQVNNVNVKQADGTKLISRDQQENNKQLKGQFDLCLIDAPCSGLGTLRKRPEL 355 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 WT D+ + Q KLL G VKPGG +V+S C+++ Q++E+ + L++ P V Sbjct: 356 KWTISEQDLNSLSTLQGKLLKAGSQLVKPGGTLVYSTCTINPQENEDQINDFLKNHPDFV 415 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + + + ++ P++ DGF+ +++ Sbjct: 416 MESP-RAILKEDTLQGGMILSNNSLQYFPELNLG--------DGFYGARMKK 458 >gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37] gi|119862477|gb|ABM01954.1| sun protein [Psychromonas ingrahamii 37] Length = 436 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 128/454 (28%), Positives = 202/454 (44%), Gaps = 38/454 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ +L+ V+ + SL+ +L + LS +D+ L++ + LR LPR+D Sbjct: 1 MNVRALAAKILNQVVEQGQSLSNVLP-----PVQQDLSPKDKALLQVLCYGVLRTLPRLD 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ +L K+ L L+ V Q+LY + +A V V AK K+ + +V Sbjct: 56 FFCRSLMDKALKGKQRDLHFLILVGFYQLLYTRIPSHAAVGETVNGAKELKK-QALKGMV 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR RE+ + ++ A + P W +RL+ YG E I + L Sbjct: 115 NGVLRNFLREQESLVEKANKQPALVYCHPSWLVKRLQAAYGDELAAQIMHNNNQQAPMWL 174 Query: 181 TV---KFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 V + + LN E P + LPGF EG VQD +A Sbjct: 175 RVNALHHTRDQYQVLLNDAGLLSFSSEFNDNALRLEKPTDVYKLPGFTEGWVSVQDGAAQ 234 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + VLD C+APGGKT + + ++ A+D +RL +++ NLDRL L Sbjct: 235 LAAHYLDAQAGDLVLDACSAPGGKTVHVLELQKNIKQMVAVDADAKRLLRVQENLDRLKL 294 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + +LFD +L DAPCS+TG IRRHPD+ W R DI Q+ Sbjct: 295 KASVIHGDASQPGSWWHGELFDRILCDAPCSATGVIRRHPDIRWLRRESDIAGLVSLQKN 354 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L +KPGGI++++ CS+ +++ +Q L S L+PL D Sbjct: 355 ILHALWDKLKPGGILLYATCSILPDENDLQIQDFLESR-QDASLIPL-----IVQDNLQN 408 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P+ MDGF+ L++ Sbjct: 409 NIQNKGRQILPN--------EDAMDGFYYAKLQK 434 >gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 429 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ + + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKSMARPMTGKQRTVHYLIIVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. M62/1] gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. M62/1] Length = 472 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 104/453 (22%), Positives = 206/453 (45%), Gaps = 27/453 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +++ +L V+ K+ +L ++ L ++++ ++ +V+ TL L +ID + Sbjct: 29 AREIAADILMEVLEKKQYSHVVLLNALK--KYQYLEKQERSFIKRVVDGTLERLMQIDFI 86 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + L + K +++ +LR+ V QI Y+D V D A + AV+ + + VN Sbjct: 87 IESFSSTPLRKMKPTVRTILRMGVYQICYMDRVPDSAACNEAVKLTVK-RGFSGLKGFVN 145 Query: 126 SILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +LR ++R+K E+ + +P+W + E YG++ V ++++ + + + + Sbjct: 146 GVLRNIARKKEEISWPDDSVRYCLPQWILGQWEPEYGRKAVQVMAESFLRERPLTVRMNL 205 Query: 185 D---IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E L + + + + + L FA+G VQD S+S+ Sbjct: 206 NQAPREEILESLREQGVEVIESGYSDQVVFLKNVDYLEGLDAFADGFLQVQDLSSSLAGD 265 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G V+D+C APGGK+ + V D+S+ ++ + N+ R L+ + Sbjct: 266 AAGVKEGSHVIDVCGAPGGKSLHIAELLNGTGMVEVRDLSESKIALVEDNIRRSGLFNIE 325 Query: 293 IIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D FD ++ D ++ D PCS G + R PD+ + + + A QR++L Sbjct: 326 ARVQDALEFDRDSEETADLLIADLPCSGLGIMGRKPDIRYNMTREQTLALAGLQREILSV 385 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +VKPGG +V+S C++D+ ++EE +L + P + + + E Sbjct: 386 VWRYVKPGGTMVYSTCTIDRAENEENAAWILENLPFEPVDLTERIGEELAKTLCRDTRKE 445 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G++++ P DGFF RR + Sbjct: 446 GYVQLLPGFYPG--------DGFFISVFRRKEE 470 >gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469] gi|254766861|sp|B7LRQ5|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia fergusonii ATCC 35469] gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia fergusonii B253] Length = 429 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 116/457 (25%), Positives = 212/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ E + P W +RL+ Y ++ I + P+ Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + ++W L+ + P + LPGF EG VQDAS Sbjct: 175 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +K GGI++++ CS+ +++ ++ L+ + ++ Sbjct: 354 SEILDAIWPHLKSGGILIYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582] gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582] Length = 429 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 129/458 (28%), Positives = 212/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ + SL+ +L S + +S +D+ L++ + TLR L Sbjct: 1 MKNNYNLRSIAAQAIGQVLDQGQSLSTILP-----SLQKNISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ +L LL V + Q+LY + +A + V A K + Sbjct: 56 PQLEWCIQQLMAKPMVGKQRTLHYLLMVGMYQLLYTRIPAHAALAETVNGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ +LLQR A + P W +R++ Y E+ I +A Sbjct: 115 KGLINGVLRQFQRQQDQLLQRAANNDSRYLHPSWLLKRIQQAYP-EQWEHIVEANNQKPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V + + + + P ++ LPGFAEG VQDA Sbjct: 174 MWLRVNRLHHTRDEYLKLMEQAGIAAAPHAEYRDALRLLSPCAVNELPGFAEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA V L + +LDLCAAPGGKT ++ A V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLSRVNENLQRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 AE + + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 RFSAE-VKQGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +++ +KPGG++V++ CS+ Q++ E V L+ + Sbjct: 353 QAEIMDAIWPHLKPGGVMVYATCSILPQENNEQVLAFLQRHADAQRVETGKQHQPG---- 408 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF L +L Sbjct: 409 -----------------RQNLPHPEDGDGFFYAKLIKL 429 >gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar sotto str. T04001] gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar sotto str. T04001] Length = 429 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 196/447 (43%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNE 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V+ K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16] gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16] Length = 447 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 123/462 (26%), Positives = 206/462 (44%), Gaps = 36/462 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + + R V+ L V + + LL + L +RD L+ +V T+ Sbjct: 2 NRPSVREVALDALLKVEKNQAYSHLLLHSTLTN---AGLDKRDSGLLTELVYGTIARKRT 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D L L S ++ + LLR+SV Q+++LD + D AVV AV A + + ++ + Sbjct: 59 LDYYLAPFLKSG-KKRALWVDVLLRLSVYQMVFLDRIPDRAVVHEAVTIANK-RGHKGIS 116 Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 LVN +LR + R+ + ++R A + P+W R N YG++ +A+++A Sbjct: 117 GLVNGVLRSIQRQGLPNVDAIADPIERAAVQTSHPQWLMARWMNQYGEDDAIAMANANNI 176 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWV 225 P + L V T A + + + + + + +G++ Sbjct: 177 PPEVCLRVNRMKTTAAELVAHLGNEGVEAERSKLLPDLAVIIKKGNPFGGEAYKKGLFTA 236 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282 QD ++ + +L G + VLD CAAPGGKT + + ALD+ +++ + Sbjct: 237 QDEASMLVAKLLGPEEGMDVLDACAAPGGKTTHIAEQMNGTGHILALDLHPHKVKLIAEQ 296 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L + DA KK ++ VLVDAPC+ G IRR PD+ W++ D+ A Sbjct: 297 AARLGLENIETRAEDARTLQTKKHYNRVLVDAPCTGFGVIRRKPDIRWSKTEKDVKHIAN 356 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L FVK GG +V+S C+++K+++E +++ L + P I Sbjct: 357 VQAAILAHASQFVKQGGTLVYSTCTIEKEENEHAIERFLDTHPQFETNERFYGRLPDHIQ 416 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 SP G + I P G DGFF V L R +P Sbjct: 417 ANGRFSPLG-LTILPHDF--------GTDGFFMVPLTR--KP 447 >gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895] gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895] Length = 428 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 211/457 (46%), Gaps = 45/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKK-QNLRSLAAQAVEQVVEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+L+ + +A + VE A K + Sbjct: 55 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVAIKRPQ-L 113 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N +LR+ R++ LL A + P W +RL+ Y + + ++ P+ Sbjct: 114 KGLINGVLRQFQRQQEALLAEFATSEARFLHPSWLLKRLQKSYPTQWEAIVEANNQRPPM 173 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + ++W L + P + +LPGF EG VQDAS Sbjct: 174 WLRVNRTHHSRDSWLTLLQDAGMNGFPHSAYPDALRLESPAPVHALPGFEEGWVTVQDAS 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V N +LDLCAAPGGKT ++ A+V A+DV ++RL ++ NL RL Sbjct: 234 AQGCVSFLAPQNGEKILDLCAAPGGKTTHILEAAPEAQVLAVDVDEQRLSRVYDNLKRLG 293 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 294 MKAT-VKQGDGRYPAQWCGEQKFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQ 352 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +K GG +V++ CS+ +++ + + L+ +P Sbjct: 353 SEILDAIWPHLKSGGTLVYATCSVLPEENSQQILAFLQRTPDATL-------------TG 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P E DGFF L + Sbjct: 400 TGTPAQPGVQNLPGAEEG--------DGFFYAKLIKK 428 >gi|153953997|ref|YP_001394762.1| hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555] gi|219854611|ref|YP_002471733.1| hypothetical protein CKR_1268 [Clostridium kluyveri NBRC 12016] gi|146346878|gb|EDK33414.1| Hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555] gi|219568335|dbj|BAH06319.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 443 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 123/460 (26%), Positives = 209/460 (45%), Gaps = 43/460 (9%) Query: 5 MN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 MN AR V+ ++ V+ + +L+ L+++D+ L+ +V TL++ I Sbjct: 1 MNSARSVAVEVVKKVLYDNAYSSIVLNKYLNK---FDLNKKDRALITELVYGTLKYKYTI 57 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D +L + S+L + + +LR+S+ Q+ YLD + ++AVV+ AVE +K +K Sbjct: 58 DCILKNFIKSNLEKMNKDILNMLRISICQLRYLDKIPEFAVVNEAVEFSKNISF--KLSK 115 Query: 123 LVNSILRRVSREKIELL--------QRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 LVN +LR R K + I P W E N YG++ I + Sbjct: 116 LVNGVLRNYLRNKSNSFGGNKEDKIEGICFEYSFPRWMAELFINQYGEDLGKFIMGSLNV 175 Query: 175 PLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + + H N + + +I P F +G V Sbjct: 176 VPKVTVRINTLKTDYKHAWNELIVNGYDVKRGNVYKEAVIINKGSNIELNPLFEKGHITV 235 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD SA + N+++LDLC+APGGK+ + + + V D+ + +L +R N Sbjct: 236 QDESAMLVSYFMDVEENMTILDLCSAPGGKSCHIGELMKNTGNVHCYDLYESKLSLVRHN 295 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + ++DA Y K D VL+D PCS G IR+ P++ W + D + Sbjct: 296 AERLGIKNITCKKLDAAKYLEKLKDTADRVLIDVPCSGLGIIRKKPEIKWNKKEDSLKDL 355 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QRK++L +VK GG +V+S C+L+K+++EE + + +P +L L + + Sbjct: 356 IEIQRKIILNAARYVKVGGKLVYSTCTLNKKENEENINWFISRNP-QYKLDKLYCGDFHN 414 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I EG++ I PD + MDGFF L + Sbjct: 415 I----IYHEEGYMTILPD---------NHMDGFFIARLIK 441 >gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA280] gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA280] Length = 429 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 116/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++ L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRVNRTHHSRDSLLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG ++++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKSFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217] gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217] Length = 428 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 122/448 (27%), Positives = 195/448 (43%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L L+ + +D+ L+ + +R LP++D Sbjct: 2 MNLRALAAKAIFDVLEKGLSLSVALPLQQQHVQ----NGKDKALLAELCYGVMRQLPQLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L K+ L QLL V Q+ + + +A V E A R + K+V Sbjct: 58 KCVSDCLAKPFKGKQRILHQLLLVGCYQLYFTRIPSHAAVSETAE-ACRQLKFDGLVKVV 116 Query: 125 NSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R++ EL P W +RL+ Y ++ I + P + Sbjct: 117 NGVLRNIQRQEPELNTDSDTLKYNTPAWLIKRLQQAYPQDWQQVIEQSHERPPMWLRNNR 176 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + + L A + L E P ++ LPGF G VQD +A L Sbjct: 177 LVQTRDAYLASLTNENIEASAGLSPDAILLESPTDVLQLPGFMSGSASVQDGAAQWAATL 236 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 N VLD CAAPGGKT I +TA+D +RLE+++ NLDRL L A Sbjct: 237 LAPQANEVVLDACAAPGGKTCHLLEIAPNISLTAVDFDLKRLERVQQNLDRLKLTAQVIH 296 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 297 GDAANIDSWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRKNSDIDELATLQMQILDHCW 356 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ +++ + + L + + I Sbjct: 357 QWLKPGGTLLYATCSILPEENSQQINAFLTRTADASLVAISEQKNPADIGW--------- 407 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 408 -QILPG--------QDNMDGFYYARLVK 426 >gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227] Length = 429 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 116/457 (25%), Positives = 212/457 (46%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ E + P W +RL+ Y ++ I + P+ Sbjct: 115 KGLINGVLRQFHRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQWQSIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + ++W L+ + P + LPGF EG VQDAS Sbjct: 175 WLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +K GGI++++ CS+ +++ ++ L+ + ++ Sbjct: 354 SEILDAIWPHLKSGGILIYATCSVLPEENSLQIKAFLQRTADA--------------ELC 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 400 ETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 4222] gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 4222] Length = 429 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 196/447 (43%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNE 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GETVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V+ K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSKYINEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|254519240|ref|ZP_05131296.1| sun protein [Clostridium sp. 7_2_43FAA] gi|226912989|gb|EEH98190.1| sun protein [Clostridium sp. 7_2_43FAA] Length = 439 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 194/458 (42%), Gaps = 41/458 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M +R ++ ++ V+ + +L E + + +D+ L+ IV TLR +D Sbjct: 1 MKSRKLARQIIQRVLEEGAYSNLVLSNELNNI---DIEDKDKGLITEIVYGTLRRKRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + + ++ +LRV++ Q+ +LD + +YA + AVE+AK +KL Sbjct: 58 VLIGNFV-KDINLIDTTVLNILRVAIYQMYFLDKIPEYAACNEAVEEAKEVSLE--ASKL 114 Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR +++ + +A W YG+ER + + Sbjct: 115 VNGILRNYIKDEKEIVVPGNRIDELAYKFSFQPWMIRLFIKQYGEERTMKLMAGLNETPK 174 Query: 178 IDLTVKFDIETW---AHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + + V + KL + + I F EG+ VQD Sbjct: 175 VTVRVNEFKAEYDEVYEKLEEIGYNIEDGYACPEAIAIKGGKGIEDNQLFKEGLITVQDE 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 SA + L VLDLCAAPGGKT + + +V A D+ + +L + N R Sbjct: 235 SAMLVAPLLDLKEGDKVLDLCAAPGGKTTHIAELLANSGEVLAFDLHENKLSLIEENAKR 294 Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L MDA D VL+D PCS G IR+ P++ W + + Sbjct: 295 LGLNNIVCKAMDATKLNSDYISYGDKVLIDVPCSGLGIIRKKPEIKWNKTRQQLKDLVPI 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+++ ++KPGG +V+S C+L+K+++EE ++ L E+ + + + Sbjct: 355 QREIMENAWQYLKPGGTLVYSTCTLNKEENEENLKWFLSKH-NDAEIEKI----YIGNNN 409 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G + I P+ MDGFF ++++ Sbjct: 410 NFIYNGDGSLTILPN---------DSMDGFFIGKIKKI 438 >gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT] gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT] Length = 443 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 188/457 (41%), Gaps = 40/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V K +L + + +D+ L+ IV T+++ ID Sbjct: 3 KARKICVDILEVVFNKNAYSNIVLRQTLNKNK---IDDKDKGLITEIVYGTIKYKYTIDT 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L+ L + + +LR++V QI +LD + ++A V+ AVE AK++K + +KLV Sbjct: 60 ILNNFLKKGIKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKEK-SVGASKLV 118 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R + +W L YG E I Sbjct: 119 NGVLRNYLRNLDKKYYNDKNLVETLCFKYSYDKWLVNMLIKQYGNEIAEDILKGLNERPA 178 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + + +SI P F EG VQD Sbjct: 179 VTVRVNNLKTDHDEAFSNLEEYGYDVEEGYICPEAIVINKGKSIEKNPLFKEGKITVQDE 238 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + +VLDLC+APGGKT + + + V A D+ + +L ++ N R Sbjct: 239 SAMLVAPSIDAKEGATVLDLCSAPGGKTTHISEIMNNTGIVKAFDIHENKLSLVKENAKR 298 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + EMDA + + D VL+D PCS G IR+ P++ +T+D Sbjct: 299 LGIDNISCAEMDASKFNKELENSADMVLIDVPCSGLGIIRKKPEIKYTKDIKSTKDIVAI 358 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+K++ +VK G +++S C+++K+++E+ + ++ P + Sbjct: 359 QKKIMENAAKYVKKEGTLLYSTCTINKEENEKNINWFIKKFPEYKV-----EPLFYGNMS 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G + I P+ MDGFF L++ Sbjct: 414 NIIYNENGTVTILPNKY---------MDGFFIAKLKK 441 >gi|163797843|ref|ZP_02191788.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199] gi|159176887|gb|EDP61454.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199] Length = 436 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 163/435 (37%), Positives = 242/435 (55%), Gaps = 13/435 (2%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 +R V+ L V+ KR L L L +RD+ R +V TLR L +D Sbjct: 14 ASRSVAFDLFRAVLAKRTPLDEALA---AHDGLAKLPERDRGFARLLVATTLRRLGHVDR 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++D + LP K ++ +LR++ +++L L VA +A VD AV + + + F KL N Sbjct: 71 LVDACIDKPLPTKAAVVRDILRLAASELLILGVAPHAAVDSAVNTVRS-RGHEPFVKLTN 129 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 ++LRR+ RE + +++ + +P+W E YG+ AI+ A +D++VK D Sbjct: 130 AVLRRLDREGRGEILKLSALEALPDWLAEGWRAAYGEATAEAIAAAGFVEPPLDISVKDD 189 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 E WA KL A +LP G +R + I LPGFAEG WWVQD +AS+P++L G + + V Sbjct: 190 PEGWAKKLGATLLPNGTLR-RGFDGRIEGLPGFAEGAWWVQDMAASLPIRLLGPVADRRV 248 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 +DLCAAPGGKTAQL +GA+V A+D SK RL++L NL RL L A DA + + Sbjct: 249 VDLCAAPGGKTAQLAAAGAQVLAIDRSKPRLQRLERNLARLGL-AASTRVADATEMKLEN 307 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 DA+L+DAPCS+TGTIRRHPD+ W + +D A Q +L+ + + PGG +VF Sbjct: 308 PVDAILLDAPCSATGTIRRHPDIPWLKHANDADSLAGLQDRLIANAVRMLAPGGTLVFCT 367 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL+ + E V L ++P ++ VP+ A ++ +G +R PD L + Sbjct: 368 CSLEPIEGPERVAAALAANP-ELKRVPIRPDEIGG--FAELITVDGDLRSRPDQLANL-- 422 Query: 426 VSSGMDGFFAVALRR 440 G+DGF+A L R Sbjct: 423 --GGIDGFYACRLVR 435 >gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 447 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 204/460 (44%), Gaps = 39/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L ++ K+ +L+ + + ++ ++ IV T+ +D Sbjct: 1 MNQRNIAFKILYEILVKKGYSNIVLNKYLNN---DGIEDVEKSFIKEIVFGTIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++D+ + + + +L + + Q++Y+D V DYA ++ +V K ++ +K Sbjct: 58 RIIDYCSTKDIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEHVG-KYASKF 116 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN++LR R +++ ++ PEW +RL N Y ++ +I ++ Sbjct: 117 VNAVLRSYLRNSMKIKFLQPNENLIEYLSFKYSFPEWIVKRLLNNYDRDATESILESLNG 176 Query: 175 PLYIDLTVKF---DIETWAHKLNAVM-----LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 I + + D + + KLN ++I + + +G+ VQ Sbjct: 177 KPEISIRLNTLKIDGKNFEKKLNDRGLKYKKGMYNNDAYYIDLKNITNDEIYKDGLIQVQ 236 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D A I ++ V+D+C+APGGKT L+ + K+ A DV + +++ ++ N Sbjct: 237 DEGAMIISKVLSPKPGDMVIDVCSAPGGKTTHLSQLMNNKGKIVAFDVYEHKIDLIKRNC 296 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D D+ + D VL D PCS G IR+ PD+ D + Sbjct: 297 RRLGVDNVDAFVFDSTKVNSEYIDKADKVLADVPCSGIGIIRKKPDIKLKNYTKKDFDEL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L +VK GG +++S C++ K+++ +V K L + ++ + + Sbjct: 357 NNIQYRILSSSSKYVKKGGYILYSTCTIGKEENINIVDKFLNENK-EFKIADIRPFLPQ- 414 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + +G I++ P++ + DGFF L+R Sbjct: 415 -NLVHFVDDKGCIQLLPNL--------NNTDGFFICKLQR 445 >gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei 53G] Length = 454 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 115/456 (25%), Positives = 209/456 (45%), Gaps = 46/456 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L + Sbjct: 28 KQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQ 82 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 83 LDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKG 141 Query: 123 LVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L+N +LR+ ++ E + P W +RL+ Y E+ +I +A + Sbjct: 142 LINGVLRQFQHQQEELLAEFNTSDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMW 200 Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230 L V ++W L+ + P + +LPGF +G VQDASA Sbjct: 201 LRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 260 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL + Sbjct: 261 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVHDNLKRLGM 320 Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 321 KAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 379 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 380 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCE 425 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 426 TGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 454 >gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026] gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412] gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302] gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 198-1] gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA143] gi|254766859|sp|B7NDR0|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Escherichia coli UMN026] gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli 042] gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412] gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302] gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli MS 198-1] gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli TA143] Length = 429 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDACYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V ++W L+ + P + LPGF EG VQDA Sbjct: 174 MWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHVLPGFEEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG ++++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLIYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 429 >gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495486|sp|C6DFR7|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 429 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 214/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ ++ V+ + SL+ LL + R +S++D+ L++ + LR L Sbjct: 1 MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVH-----QREVSEKDRALLQELCFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ +L L+ V + Q+ Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N + +R E I+ + + P W R+E+ Y + + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQEELIQREANHSSHYLHPSWLLARIEHAYPNHWQTIVEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + E + + L + P ++ LPGF++G VQDAS Sbjct: 175 WLRVNRLHHTREAYLNLLAQEGIEAFPHTEFTDAIRLASPCAVDQLPGFSQGWATVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V + +LDLCAAPGGKT ++ + V A+D+ + RL +++ NL RL Sbjct: 235 AQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPQSHVLAVDIDETRLGRVKENLLRLQ 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++AE + + D +C ++FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 295 MHAE-VKQGDGRYPDSWCEGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG +V++ CS+ Q++ + V L LV + Sbjct: 354 KEIFDAIWPHLKVGGTMVYATCSILPQENAQQVTDFLTRH-ADATLVDTGTRELPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGFF L + Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428 >gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum BKT015925] gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum BKT015925] Length = 443 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 198/457 (43%), Gaps = 40/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR + +L V K +L + + ++ +D+ L+ IV T+++ ID Sbjct: 3 NARKICVDILEMVFNKNAYSNIVLRQSLNN---QKINDKDKGLITEIVYGTIKYKYTIDT 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L+ L + +LR ++ QI YLD + ++A V+ AV AK+ K + +KLV Sbjct: 60 ILNAYLKKGTKSVDSYILNILRTTIYQIKYLDKIPNFAAVNEAVNIAKKHK-SIGESKLV 118 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R ++ + +W + N Y +E I Sbjct: 119 NGVLRNYLRNLDKVYYNKNSIIERLSFEYSCEKWLVKMFINQYNEEIAEKILKGLNERPA 178 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + N + +SI S P F +G VQD Sbjct: 179 VTVRVNNLKTDYDEAFNKLEEYEYSIEEGYVCPEAIVINKGKSIESNPLFEDGKITVQDE 238 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + VLDLC+APGGKT + + + KV A D+ + +L ++ N R Sbjct: 239 SAMLVAPTMNVEQGDLVLDLCSAPGGKTTHISEIMNNTGKVKAFDIHENKLNLVKDNAKR 298 Query: 286 LHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + ++DA + + DAVL+D PCS G IR+ P++ +T++ + + Sbjct: 299 LGINNIECSKLDASKFNEELKEIADAVLIDVPCSGLGIIRKKPEIKYTKNMESVKDIVKI 358 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q++++ +VK GG +++S C+++K+++E+ + +++ P + Sbjct: 359 QKEIMKNAARYVKVGGTLLYSTCTINKKENEQNIDWFIKNFPQYTV-----EPIFYGKMD 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G + I P+ MDGFF L+R Sbjct: 414 NIIYNENGTVTILPNKY---------MDGFFIAKLKR 441 >gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia bercovieri ATCC 43970] gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia bercovieri ATCC 43970] Length = 431 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGLH-----NTISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ +LPGF G VQDAS Sbjct: 175 WLRVNRLHHSRSEYLELLKQADIDAAPHDAYPDALRLITPCAVSALPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V+L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVELLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLQ 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHAV-VRVGDGRTPEAWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ ELV + Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRH-SEAELVETGTTAAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLIK 428 >gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus donghaensis MPA1U2] gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus donghaensis MPA1U2] Length = 450 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 115/468 (24%), Positives = 200/468 (42%), Gaps = 47/468 (10%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK+ N R + +L V K+ LL ++ +++ L+ I TL Sbjct: 1 MKNKKLQGNVRDAAFSILWAVENKQAYSNLLLHQTIESY---GIAAKNRGLLTEITYGTL 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 + +D L+ L + ++ LLR+S+ QI+YLD + +AVV AVE AKR + Sbjct: 58 QHQMTLDYYLEPYLKGKIES---WVKILLRLSLYQIVYLDRIPAHAVVHEAVEIAKR-RG 113 Query: 117 NRHFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 + A +VN +LR R + ++I+ + PEW R +G E+ ++ Sbjct: 114 HGGVASVVNGVLRSVQRSGVRSFNTISDPYEKISIETSHPEWMIRRWAEQFGLEKTREMA 173 Query: 170 DACISPLYIDLTVKFDIETWAH--------KLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + V T +L A L F +G Sbjct: 174 LENNKTPLQTVRVNTVRATVEEAIEMLESEELEAEPSKMIPECLVVTNGQPARTTTFEKG 233 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278 +QD S+ +P ++VLD+CAAPGGKT + + + ALD+ + +++ Sbjct: 234 FITIQDESSMLPAYALQVEPGMTVLDMCAAPGGKTTHIAEKMNNSGTLYALDLHQHKVKL 293 Query: 279 LRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N +RL + D ++ FD +LVDAPCS G I+R PD+ +T+ Sbjct: 294 IDENAERLGHTVIETTVGDGKQSVERFGEEKFDRILVDAPCSGLGVIKRKPDIKYTKKEQ 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D + Q +LL Q +K GI+V+S C++D ++ ++ L+ P E+ + Sbjct: 354 DFARLQEIQIELLDQAARLLKEDGILVYSTCTVDAVENRGTAERFLKEHP---EMEKIQV 410 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 A + + G++++ P G DGFF A +++ + Sbjct: 411 ALPDLMGIKHT----GFVQVFPQDY--------GSDGFFIAAFKKIQK 446 >gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13] gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13] Length = 429 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 128/457 (28%), Positives = 217/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R ++ + V+ + SL+ +L S + +S +D+ L++ + TLR L Sbjct: 1 MKNNYNLRSHAAKAIGQVLDQGQSLSTVLP-----SLQKTISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ +L LL V + Q+LY + +AV+ VE A K + Sbjct: 56 PQLEWCIQQLMAKPMTGKQRTLHYLLMVGLYQLLYTRIPAHAVLAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ ELLQR A + P W +R++ Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQEELLQRAANNDSRYLHPSWLLKRIQQAYPAQWEQIIDANNQKPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + E + + + +P ++ LPGFA+G VQDAS Sbjct: 175 WLRVNRLHHTREDYLRLMEQAGIAAEPHAEYPDALRLLVPCAVTDLPGFADGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVMAVDIDEQRLGRVKENLQRLR 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+AE + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHAE-VKLGDGRTPQQWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAKLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ ++ E + L+ P + + Sbjct: 354 AEIIDAIWPHLKSGGVMVYATCSILPTENAEQITAFLQRHPDARLVETGDEQQPG----- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF L ++ Sbjct: 409 ----------------RQNLPHPEDGDGFFYAKLIKM 429 >gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri FSL S4-171] Length = 446 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 207/467 (44%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVREIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +++IA + +P W +R YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIQDPVEKIAVETSLPVWLAKRWAKQYGNEQLREIGMAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V E +LN L S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 ALPEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf. saccharolyticum K10] Length = 472 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 104/453 (22%), Positives = 205/453 (45%), Gaps = 27/453 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +++ +L V+ K+ +L ++ L ++++ ++ +V+ TL L +ID + Sbjct: 29 AREIAADILMEVLEKKQYSHVVLLNALK--KYQYLEKQERSFIKRVVDGTLERLMQIDFI 86 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + L + K +++ +LR+ V QI Y+D V D A + AV+ + + VN Sbjct: 87 IESFSSTPLRKMKPTVRTILRMGVYQICYMDRVPDSAACNEAVKLTVK-RGFSGLKGFVN 145 Query: 126 SILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +LR ++R+K E+ + +P+W + E YG++ V ++++ + + + + Sbjct: 146 GVLRNIARKKEEISWPDDSVRYCLPQWILGQWEPEYGRKAVQVMAESFLRERPLTVRMNL 205 Query: 185 D---IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E L + + + + + L FA+G VQD S+S+ Sbjct: 206 NQAPREEILESLREQGVEVIESGYSDQVVFLKNVDYLEGLDAFADGFLQVQDLSSSLAGD 265 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G V+D+C APGGK+ + V D+S+ ++ + N+ R L+ + Sbjct: 266 AAGVKEGSHVIDVCGAPGGKSLHIAELLNGTGMVEVRDLSESKIALVEDNIRRSGLFNIE 325 Query: 293 IIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D FD ++ D ++ D PCS G + R PD+ + + A QR++L Sbjct: 326 ARVQDALEFDRDSEETADLLIADLPCSGLGIMGRKPDIRCNMTREQTLALAGLQREILSV 385 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +VKPGG +V+S C++D+ ++EE +L + P + + + E Sbjct: 386 VWRYVKPGGTMVYSTCTIDRAENEENAAWILENLPFEPVDLTGRIGEELAKTLCRDTRKE 445 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G++++ P DGFF RR + Sbjct: 446 GYVQLLPGFYPG--------DGFFISVFRRKEE 470 >gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329] Length = 427 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMGAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424 >gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio caribbenthicus ATCC BAA-2122] Length = 426 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 119/452 (26%), Positives = 203/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGHSLSNALP-----AAQTTIKPRDYALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 STANQLMDKPLKGKQRVFHHLILVGLYQLSFMRIPAHAAVGETVEATKTLKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELL----QRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R + +L AG P W + L+ Y + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEQLDAQAVSHDAGKYGHPSWLLKLLQASYPTDWQQIVAANNTKAPMWLR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P + LPGF +G VQDA+A + Sbjct: 175 VNQHHHQRQDYLELLKESGIECEIHEEAQDAIKLLSPCDVTQLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA KV A+D RL+++ NL RL L A Sbjct: 235 SSDFLNAQDGELILDCCAAPGGKTAHILERAPNCKVVAIDCDDTRLQRVHDNLQRLQLNA 294 Query: 291 EDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I + ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++L Sbjct: 295 TVICGDARNPEEWWQGEKFDRILLDAPCSATGVIRRHPDIKWLRRAEDIHALAQLQSEIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++++ V+ L + + + Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENKDQVKAFLTRTCEA--------------SLIGSKL 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P + MDGF+ +++ Sbjct: 401 ENPGRQILPGERD--------MDGFYYAVIKK 424 >gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia intermedia ATCC 29909] gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia intermedia ATCC 29909] Length = 429 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 211/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKNISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ + + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRIFHYLIMIGLYQLVYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSRYLHPSWLLARIKQAYPDQWQQIVDANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ LPGF G VQDAS Sbjct: 175 WLRVSRLHHTRGEYLDLLKEAGIDAEPHAYYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVNENLQRLK 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI A Q Sbjct: 295 LHAV-VRVGDGRTPETWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ ELV + Sbjct: 354 SEIIEAIWPRLKKGGVMVYATCSILPEENQQQIAAFLQRH-SDAELVETGTNTAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLFK 428 >gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174] gi|149834000|gb|EDM89080.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174] Length = 450 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 103/465 (22%), Positives = 198/465 (42%), Gaps = 39/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M SG+N R + +L + + + S ++ L ++++ + + TL + Sbjct: 1 MTSGINTREMIMEILLQIDEEGEHSHIAIRNAL--SKYQFLPKQERAFITRVCEGTLEYR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID ++D + + K ++++LR +V Q+ ++D V D AV + AV+ A++ K + Sbjct: 59 ILIDYIIDSFSKIPVDKMKPPIREILRSAVYQLKFMDRVPDSAVCNEAVKLAQK-KGFYN 117 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR V+R+ EL + +PE ER YG+E + Sbjct: 118 LKPFVNGVLRTVARQMDELEYPPREENLVRYLSVRYSMPEELVERWLADYGEETTEKMLA 177 Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221 + + + + + + + I++L F +G Sbjct: 178 DFLEEKPVTVRCRTYLNSVDKICESLKNQGVKVEQAPYLPYAKRISGYNHILALDAFIQG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT---ALDVSKRRLEK 278 VQD S+ + ++ V+D+CAAPGGK+ + A D+S+ ++ Sbjct: 238 KMVVQDVSSMLVAEIANPQKGDYVIDMCAAPGGKSLHIGDKMEGFGTVDARDISQYKVNL 297 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N+ RL+ DA + + D VL D PCS G I + P++ + T Sbjct: 298 IEENIQRLNSINVQAKVQDATIFDVESECKADIVLADVPCSGYGVIGKKPEIKYRSTTQK 357 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + QR +L + +VKP G++VFS C++ K+++EE + + + P +E + Sbjct: 358 EEELVILQRTILDKAAEYVKPRGVLVFSTCTIAKEENEENMMWFMNNHPFKLESID---- 413 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ + G++++ P + G DGFF RR Sbjct: 414 EFIPEELRSETTGLGYLQMLPGV--------HGTDGFFIARFRRK 450 >gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera micronuciformis F0359] gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera micronuciformis F0359] Length = 441 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 186/461 (40%), Gaps = 44/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + H L V + ++ F + RD+ +V TLR L +D Sbjct: 1 MNVREAAFHSLIAVCKDGAYSNIVVSKIIQKEKF---TDRDRRFYTELVYGTLRSLNYVD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + +LR+ + Q+ ++D V A + AV+ A+R N AK Sbjct: 58 YIIGILSSRKKNSLDPVCLAVLRMGLYQLFFMDKVPPSAACNEAVKLARRF-GNEGMAKF 116 Query: 124 VNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN++LR + + ++ W E+ +G++ + + + Sbjct: 117 VNALLRNSLRQKERLAIPTFDENPVLHLSLTWHQQSWLIEKWITEFGRDHTVTLCRYFDT 176 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWV 225 + + D E L+ +P I L A+G+ + Sbjct: 177 VPELCIRANTERIDREGLMKLLSEKGIPCRPAEHAPDGIYAEKNPGIHKLTEIADGLGLI 236 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCN 282 QD + + + + D+CAAPGGKT L G K A D+ + +L+ + N Sbjct: 237 QDEPSQLVAAIADPQEKTVIFDVCAAPGGKTTHLATLGTKSSTVYAFDIYEHKLKLIEDN 296 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 ++RL L D D VLVDAPCS G +R PD+ W + +D+ Sbjct: 297 VNRLGLKNVRTRLQDGTSVGEIYPEKADCVLVDAPCSGLGILRHKPDLRWRKTVEDLTVF 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q+K+L VKPGG +V+S C++++ ++E++V S E+VP+ +A+ S Sbjct: 357 PPLQKKILESAAKCVKPGGTLVYSTCTMNRAENEDIVNAFRISHK-DFEVVPVGNAFGFS 415 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D ++ I P G+DGFF LRR Sbjct: 416 KDSD-------YLSILPQD--------DGLDGFFIAKLRRK 441 >gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661] gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661] Length = 429 Score = 264 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 213/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + ++++D L++ + LR L Sbjct: 1 MKKNTNLRSIAAQTIEKVVEQGQSLSNVLP-----AAQKSVAEKDAALLQELCYGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ + K+ ++ L+ V + Q+++ + +A + VE A K + F Sbjct: 56 PQLEWIIGQLMERPMTGKQRTIHFLVMVGLYQLIFTRIPAHAALAETVEGASSLKR-QQF 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPL 176 L+N + +R E ++ + + +W ERL+ + + ++ P+ Sbjct: 115 KGLINGVLRQFQRKQDELVQQMNVGDQKYLHSKWLLERLKRAWPNNWEAIVEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L E P + LPGF +G VQDAS Sbjct: 175 WLRVNRQHHSRDAWLKLLQEAGKEAEPHPLHADALRLETPCPVSQLPGFDQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L N S+LDLCAAPGGKT ++ + + V A+D+ ++RL ++ NL RL+ Sbjct: 235 AQGCVALLDPQNGESILDLCAAPGGKTTHILEAAPQATVLAVDIDEQRLARINENLLRLN 294 Query: 288 LYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MTAE-VKVGDGCLPETWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L +KPGG ++++ CS+ +++ V L + ++ + Sbjct: 354 QQILDAIWPHLKPGGTLLYATCSILPEENHLQVAAFLERHEDAMLSDTGDANHP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P DGFF L + Sbjct: 408 -------GLQVFP--------APQDGDGFFYAKLLK 428 >gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens E str. JGS1987] gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens C str. JGS1495] gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens C str. JGS1495] gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens E str. JGS1987] Length = 442 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + +L V+ ++ ++ + + +D+ L+ +V T+++ ID Sbjct: 1 MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + + + S+ +LR ++ Q+ +LD V YA+V+ AV K + AK Sbjct: 58 IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR R + + + W E YGKE L I + Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEYALRILRGLNTIP 174 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227 Y+ + V D + +L + + +I + EG+ VQD Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 SA + LF + V+DLC+APG K + +++ KV A D+ +L ++ N+D Sbjct: 235 ESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294 Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L ++ DA K D VL+D PCS G IR+ P++ W + +D+ + Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L ++++ GG +V+S C+L+K+++EEV+ + + + Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G + I P+ MDGFF L++ Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439 >gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii 3594-74] Length = 454 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 210/456 (46%), Gaps = 46/456 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L + Sbjct: 28 KQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQ 82 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 83 LDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKG 141 Query: 123 LVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A + Sbjct: 142 LINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMW 200 Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230 L V ++W L+ + P + +LPGF +G VQDASA Sbjct: 201 LRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 260 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL + Sbjct: 261 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM 320 Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 321 KAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 379 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 380 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCE 425 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 426 TGTPE-------QPGKQNLPGAEEGDGFFYAKLIKK 454 >gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 200] gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis IBL 200] Length = 429 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 197/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNE 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GEAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V+ K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-15] gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-15] Length = 429 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFSNETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V++K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|319899453|ref|YP_004159550.1| SUN-family protein [Bartonella clarridgeiae 73] gi|319403421|emb|CBI76989.1| SUN-family protein [Bartonella clarridgeiae 73] Length = 455 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 191/444 (43%), Positives = 262/444 (59%), Gaps = 9/444 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V LL V+ K L+ L D EYG + LS RD++L RAI+ LR + Sbjct: 15 PGLVVRQVCVRLLGAVLDKHTPLSGLTDNEYGHPQYLGLSYRDRLLCRAILGAALRHRSQ 74 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I L L LP + +SL LL +S+ QILYLDV D+A +DLAV AK D R F+ Sbjct: 75 ITVALSRFLTRPLPSQAFSLHHLLHISITQILYLDVPDHAAIDLAVRVAKIDPRMRRFSG 134 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN+ILR +RE L + I IP WF+ L + YG E+ I +DLTV Sbjct: 135 LVNAILRNFAREAAILRVQTPTIKAIPTWFERLLVSTYGAEKADQIVAIQSIIPPLDLTV 194 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D WA +L ++LP G +RL SI LPG+AEG WWVQD +A++P L G ++ Sbjct: 195 KSDSAGWAKQLGGIVLPNGSVRLVSSAYSITDLPGYAEGAWWVQDVAAALPACLLGNIHG 254 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 V DLCA+PGGKTAQL++ GA VTA+D+S RL++L+ N+DRL+ D + Sbjct: 255 KKVADLCASPGGKTAQLVLQGADVTAIDISANRLKRLKENMDRLNFS-VRYWLGDVRQFH 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P +LFDAVL+DAPCSSTGTIRRHPD+LW + DD+ K A Q LLL I+ +K G ++ Sbjct: 314 PDQLFDAVLLDAPCSSTGTIRRHPDILWIKTMDDVTKLAEMQYDLLLAAIALLKKNGRII 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 FSNCSL +++ E++V+K+L + + L P+ + + MA LS +G++R P Sbjct: 374 FSNCSLAREEGEDLVEKILSTRH-DIVLEPILAE--EMGAMAHLLSIKGFLRTIPSDFCD 430 Query: 423 IDGVSS-----GMDGFFAVALRRL 441 + + GMDGFFA R++ Sbjct: 431 ENFNTEEKLFLGMDGFFAARFRKV 454 >gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-272] Length = 429 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 213/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++H + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAHAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R + E + P W +RL+ Y E+ +I++A Sbjct: 115 KGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 353 QSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------EL 398 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 399 CETGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 429 >gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis Bt407] gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis Bt407] gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 429 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 197/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V+ K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus Peru-466] gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AN-5034] gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus K5030] Length = 427 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 209/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAIS-DACISPLYID 179 N++LR R + EL Q AG P W + L++ Y ++ + + +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQDAYPQQWESIVDANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424 >gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 137 str. F0430] gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 137 str. F0430] Length = 451 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 112/458 (24%), Positives = 193/458 (42%), Gaps = 41/458 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L+ V L + L RD+ + +V T++ +D Sbjct: 13 PVRELAMQVLTEVHVDGAYANVALVRAMRAAK---LPDRDRRFLTELVYGTVKAGDTLDY 69 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L L R K +++LLR+ + QI ++D V A + AVE AK+ R V Sbjct: 70 ILAKYLRDGKARIKPQIRELLRLGIYQIFFMDKVPASAACNTAVELAKKH-GKRGADSFV 128 Query: 125 NSI-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N++ R + + +A + P W R + YG +R + Sbjct: 129 NAVLRTAVREPERAAIPAGRSARLLALRAQHPFWMVNRWVSLYGYDRAEELCRCNNERAP 188 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDA 228 + L V D E KL A + ++ +L EG+ VQD Sbjct: 189 LSLRVNTLRIDREGLLEKLAAAGAQARPSATVPDGIVVTSHGTLDALAPLREGLCQVQDE 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + G ++V+D CAAPGGKT + + K+ A DV + ++ ++ N R Sbjct: 249 SSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARR 308 Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + +DA + + D VL+DAPCS G +RR PD W R +++ Sbjct: 309 LGIDIIETWMLDAREIGARCAGTADRVLIDAPCSGFGVLRRKPDARWRRKPEELGALPKL 368 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L + V+PGG +V+S C+++ ++E VVQ+ L P V + Sbjct: 369 QQEILAGAAAAVRPGGALVYSTCTMETAENEGVVQRFLELHPEFV-------LERAGAFL 421 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + ++I P G DGFF ++RL Sbjct: 422 PVQQTEDAMVQIFP--------TEDGGDGFFIARMKRL 451 >gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-Cer4] gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-Cer4] Length = 429 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 199/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A + ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKLGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V++K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13] gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13] Length = 442 Score = 264 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 108/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + +L V+ ++ ++ + + +D+ L+ +V T+++ ID Sbjct: 1 MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + + + S+ +LR ++ Q+ +LD V YA+V+ AV K + AK Sbjct: 58 IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +N +LR R + + + W E YGKE L I + Sbjct: 115 INGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVP 174 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227 Y+ + V D + +L + + +I + EG+ VQD Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 SA + LF + V+DLC+APG K + +++ KV A D+ +L ++ N+D Sbjct: 235 ESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294 Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L ++ DA K D +L+D PCS G IR+ P++ W + +D+ + Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRILLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L ++++ GG +V+S C+L+K+++EEV+ + + + Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G + I P+ MDGFF L++ Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439 >gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400] gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400] Length = 427 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 125/450 (27%), Positives = 201/450 (44%), Gaps = 35/450 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K ISL+ L + + +D+ L+ + +R LP++D Sbjct: 1 MNVRALAAKAIYEVLEKGISLSVALPDQQQHLQ----NGKDKALLAELCYGVMRQLPQLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L K+ L QLL V Q+ + + +A + E A R K+V Sbjct: 57 KCVSDCLAKPFKGKQRILHQLLIVGCYQLYFTRIPAHAAISETAE-ACRQLRFDGLVKVV 115 Query: 125 NSILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 N +LR + R+ EL P WF + L+ Y I + P + Sbjct: 116 NGVLRNIQRQDSELNTDSDTLRFNTPAWFIKHLQQAYPDNWQDIIEQSHQRPPMWLRNNQ 175 Query: 184 FD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 H ++A + L E + + +LP F EG VQD +A L Sbjct: 176 QSQTCDAYLAALAQHDISAQAGSSPNAILLESAKDVAALPDFMEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 + VLD CAAPGGK+ + + A+D ++RL +++ NLDRLHL A Sbjct: 236 LAPTADELVLDACAAPGGKSCHLLELAPTINLVAVDFDQKRLARVQQNLDRLHLKAQLIH 295 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAADIPSWWQGQQFDRILLDAPCSATGVIRRHPDIKWLRKNSDIEELANLQKQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + V++ L + LVP+ + +S GW Sbjct: 356 QWLKPGGTLLYATCSILPQENSQQVEQFLART-ADASLVPI--------EQQAHISDIGW 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + I Sbjct: 407 -QILPG--------QDNMDGFYYARLVKAI 427 >gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB] gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB] Length = 471 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 105/464 (22%), Positives = 197/464 (42%), Gaps = 41/464 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 ++ R ++ +L + LLD D S D+ L+ ++V TLR R+ Sbjct: 21 KISPRSLAVEILDRIDTTGAFAEPLLDAFLRDHLLD--SAPDRHLLTSLVYGTLRMRGRL 78 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR---- 118 D ++ + + ++ +LR ++ Q L++ + +A+VD AVE AK R Sbjct: 79 DWIIQQLYQGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYPGREKLV 138 Query: 119 -----HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 + + V++ + ++ IA + P W R + YG ER ++ A Sbjct: 139 NALLRNAVRKVSANELSYPDFQKTPVEHIAVMHSHPPWLVRRWLSVYGTERCRSLCMANN 198 Query: 174 SPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-------AEGVW 223 + + V D T L I P EG++ Sbjct: 199 QVPPVAIRVNSLKADRSTLKEILEHEGFTVSESSFSPDALLITDPPRHLRLTSTSREGLF 258 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD ++ + +L ++LD+C G KT L + + ++ A+D+ +LE L Sbjct: 259 ILQDEASQLIGRLVAPAAGEAILDVCCGTGVKTTHLASLMSNQGRILAVDLYPAKLEALN 318 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 R+ + +I + DA + +FD +LVDAPCS GT+RR+P++ W Sbjct: 319 RLSSRMGISNIEIRQADASTMEDETAFRNMFDRILVDAPCSGLGTLRRNPEIKWRLQPRA 378 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + Q ++L + +F+ GG +V+S C++ +++E ++ K L ++ +++ Sbjct: 379 LPSYSRLQEQILNRAAAFLHRGGCLVYSTCTILPEENELLIGKFLSRHDEFRQIRLSDAS 438 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G+ R PD +SGMDGFFA L + Sbjct: 439 FA----YPTLVDENGFFRTAPD--------TSGMDGFFAALLTK 470 >gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3] gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3] Length = 434 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 213/456 (46%), Gaps = 44/456 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ +L+ V+ + SL+ L + + L+ +D+ L++ + LR LPR+D Sbjct: 1 MNVRALAAQVLNLVVEQGQSLSQALPVL-----QKDLTPKDKALLQVLCYGVLRTLPRLD 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K+ L+ V + Q+LY + +A V V AK + + +V Sbjct: 56 FFCRSLMQKPLKGKQRVFHFLILVGIYQLLYTRIPSHAAVGETVNGAKALNK-QALKGMV 114 Query: 125 NSILRRVSREKIELLQRIAGI----SIIPEWFKERLENFYGKERV--LAISDACISPLYI 178 N +LR RE+ L+++ P W +RL++ YGKE+ + + + +P+++ Sbjct: 115 NGVLRNFLREQEALIEKADQQDTLLYCHPGWLVKRLQSAYGKEKAASIMLENNQQAPMWL 174 Query: 179 DLTV-KFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + D++++ L A+ + + LPGF +G VQD + Sbjct: 175 RVNALHHDVKSYQALLTEKDLGSRLALDSENKNALCLDKATDVYQLPGFEDGWVSVQDGA 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRL 286 A + VLD CAAPGGKT + ++ A+D +RL ++R NL+RL Sbjct: 235 AQLAAHYLDAQPGDLVLDACAAPGGKTVHSLERQPKIAQMVAVDADDKRLVRVRENLERL 294 Query: 287 HLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 +L A I + + FD +L DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 295 NLTATVIHGDASTPDVWWKGEKFDRILCDAPCSATGVIRRHPDIRWLRRDSDIKELVSLQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + +L +K GGI++++ CS+ +++ ++ L + +LVPL+ Y + Sbjct: 355 KSILNALWDKLKAGGILLYATCSILPDENDLQIKAFLETH-ADAKLVPLSKQYASTTV-- 411 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P+ MDGF+ L++ Sbjct: 412 -------GRQLLPND--------DTMDGFYYAKLQK 432 >gi|229541137|ref|ZP_04430197.1| sun protein [Bacillus coagulans 36D1] gi|229325557|gb|EEN91232.1| sun protein [Bacillus coagulans 36D1] Length = 447 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 203/466 (43%), Gaps = 46/466 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M N R + LL V + LLD F D+ L+ I TL+ Sbjct: 1 MSKERKNVREAALELLEAVEKNESYSNLLLDRYIEKYRFHG---PDRALLTEITYGTLQR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D L L + ++ LLR+S+ Q++YLD + D A++ AVE AK+ + +R Sbjct: 58 KQTLDYFLAPFLRKKIEN---WVRILLRLSLYQMVYLDKIPDRAIIFEAVEIAKK-RGHR 113 Query: 119 HFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + +VN +LR R +E + L+R++ + P W R YG + + +A Sbjct: 114 GISGIVNGVLRAIQRGGLRSLKEIEDPLERLSVATSHPHWLVARWAEAYGYKTTKEMCEA 173 Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVW 223 + P V + + KL + ++ F EG++ Sbjct: 174 NLIPPLQTARVNLNRASVDEVIEKLEREGFTVERSPVIPEAVRSRKGNLARSACFKEGLF 233 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280 +QD S+ +LD CAAPGGKT + +V ALD+ +++ ++ Sbjct: 234 TIQDESSMAVAYALCIQEGQRILDACAAPGGKTTHIAEKLEGTGEVVALDLHPHKVKLVQ 293 Query: 281 CNLDRLH---LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N +RL + A + DA K FD +LVDAPC+ G +RR PD+ + + DDI Sbjct: 294 ENAERLGTGQVEAIAMDSRDAGARFEKNTFDRILVDAPCTGFGVLRRKPDIKYAKTVDDI 353 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +L +KP GI+VFS C++D++++E ++ L+ P E PL+ Sbjct: 354 HALKQVQLSILSGVSELLKPDGILVFSTCTVDREENEGTIETFLQEHP-EFEPYPLH--- 409 Query: 398 WKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + AM +G+ ++I P G DGFF ++R+ Sbjct: 410 ---VPEAMESCVDGYRMQIFPQDF--------GGDGFFIASIRKKA 444 >gi|313901450|ref|ZP_07834907.1| sun protein [Thermaerobacter subterraneus DSM 13965] gi|313468278|gb|EFR63735.1| sun protein [Thermaerobacter subterraneus DSM 13965] Length = 488 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 108/442 (24%), Positives = 172/442 (38%), Gaps = 38/442 (8%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 + L S L R++ L + R +D L R ++ Sbjct: 58 YVDQALARLLEGS---GLPARERALATELAYGVARRQGSLDWALARWARRPPERLDPPVR 114 Query: 84 QLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL--- 139 LR+ Q+ +LD + D+A V +VE +R + A VN++LRR +R Sbjct: 115 VALRLGAYQLWHLDRIPDHAAVAESVELVRRH-GPGYAAGFVNAVLRRAARHGFPHEAVP 173 Query: 140 -------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET---- 188 +A P W R G E + +A + V Sbjct: 174 GAAEDLETHLALTLAHPRWLVRRWLERLGPEETRRLLEANNRIPPLSARVNMLRADPRSL 233 Query: 189 ----WAHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 A + L+ S L F +G QD S+ + V + Sbjct: 234 AAALAAQGVAVEPGRFLPEALRLGHGVSPAELEAFQQGALTWQDESSMLAVHVLDPRPGQ 293 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPGGK+ + + +V A DV RLEK+R RL L + + + +D Sbjct: 294 LVLDVAAAPGGKSTHMAERMGDRGRVVACDVDPGRLEKVRAAARRLGLRSVEPLALDGRL 353 Query: 301 YCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + D VL D PCS G I R PD+ W + +D+ A Q +LL + +KPG Sbjct: 354 LPERFAGQADRVLADVPCSGLGVIARRPDLRWRKTPEDLKALAALQGELLRAAAACLKPG 413 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+ + +++++VV+ LR V L + + GW+++ P Sbjct: 414 GVLVYSTCTTEPEENQQVVEGFLREGGDRFAAVDLRPRLPAPLRDEPG-TERGWLQLWPH 472 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 G+DGFF L+R Sbjct: 473 --------RHGVDGFFIACLQR 486 >gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens B str. ATCC 3626] gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens CPE str. F4969] gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens NCTC 8239] gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens D str. JGS1721] gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens B str. ATCC 3626] gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens CPE str. F4969] gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens D str. JGS1721] gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens NCTC 8239] Length = 442 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + +L V+ ++ ++ + + +D+ L+ +V T+++ ID Sbjct: 1 MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + + + S+ +LR ++ Q+ +LD V YA+V+ AV K + AK Sbjct: 58 IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR R + + + W E YGKE L I + Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVP 174 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227 Y+ + V D + +L + + +I + EG+ VQD Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 SA + LF + V+DLC+APG K + +++ KV A D+ +L ++ N+D Sbjct: 235 ESAMLVAPLFDLKGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294 Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L ++ DA K D VL+D PCS G IR+ P++ W + +D+ + Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L ++++ GG +V+S C+L+K+++EEV+ + + + Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G + I P+ MDGFF L++ Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439 >gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH676] gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST24] gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus m1550] gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus ATCC 10876] gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus ATCC 10876] gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus m1550] gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST24] gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH676] gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar pakistani str. T13001] Length = 429 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V++K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus F65185] gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock4-2] gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock4-2] gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus F65185] gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 429 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ SA + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKSA---IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKSGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKT + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GDAVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V++K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102] gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102] Length = 487 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 195/498 (39%), Gaps = 79/498 (15%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N R ++ L V K LD L RD+ LV +V ++R +D Sbjct: 2 TNPRQLAFIALRDV-HKGAYADVALDRVLQKV---NLPDRDRRLVTELVYGSVRRQRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + ++ L+ +L + Q+ Y + A V+ V+ AK + Sbjct: 58 TLIDQFAKNKSHQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKEN-GFSGLTGF 116 Query: 124 VNSILRRVSREKIELLQRIAG--------------------------------------- 144 VN +LR+ R+ E R AG Sbjct: 117 VNGLLRQYLRKAGEQGGRGAGGQRSRGAEEKDSLLVPVPQPPVPSTQAPVLNFDPLQLPE 176 Query: 145 --------ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKL 193 + P+W + G + + IDL + IE L Sbjct: 177 NPVERLGILHSFPDWIIQVWLEQLGLTETEQLCEWMNQSPTIDLRINPLCTSIEEVEAAL 236 Query: 194 NAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 +V +R SI LPGF EG W VQDASA + L V+ Sbjct: 237 QSVGLLVRRIPDLPQALRFMGNTGSIQKLPGFKEGWWTVQDASAQLVSHLLDPQPGEVVI 296 Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302 D+CAAPGGKT + + K+ A D + RL KL+ N RL+L + I D+ Sbjct: 297 DVCAAPGGKTTHIAELMADSGKIWACDRTASRLRKLQENSQRLNLQSIQIYTGDSRHSNQ 356 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + D VL+DAPCS GT+ RH D W + + + + + Q++LL +FVK GG++V Sbjct: 357 FQNTADRVLLDAPCSGLGTMHRHADARWRQTPESVRELSVLQKELLTHTSTFVKAGGVLV 416 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ C+L ++EEV+ L SP + + + +P+GW ++ P Sbjct: 417 YATCTLHPAENEEVISAFLAESPHWQ----IEPPRGIELAASAYSTPQGWFKVWPH---- 468 Query: 423 IDGVSSGMDGFFAVALRR 440 MDGF V LR+ Sbjct: 469 ----RQDMDGFLMVRLRK 482 >gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1] gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1] gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB [butyrate-producing bacterium SSC/2] Length = 447 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 39/460 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L V +K + F +RD+ +V TL ID Sbjct: 3 NPRECALDVLIKVDKKEELSHIAISNVLEKYQFS--EKRDRAFFTRLVEGTLERQITIDY 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V D + + + K ++ LLR+ + QILY+D V D A + AV+ AK+ + + V Sbjct: 61 VADQFSKTKIRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKK-RGFSRLSGFV 119 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N +LR +SR+K E+ ++ IPEW + + Y E V I + + Sbjct: 120 NGVLRNISRKKDEIQYPSREKNLETYLSVAYSIPEWIIKFFQKTYDNETVEKIIASYLEE 179 Query: 176 LYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQ 226 L E +L A + L E I L F EG +VQ Sbjct: 180 RKTTLCCLISKGGKEAVRKELEAEGVTVEDGSLIENAVKISDYDFLYRLKAFREGSCYVQ 239 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNL 283 D S+ + +L V+DLC+APGGK+ + +V + D+++ + + + N+ Sbjct: 240 DESSMLCAKLASVQKEQFVMDLCSAPGGKSLYVADQLKGSGRVLSRDLTEYKTDLIEDNI 299 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 DR+ + DA + D V+ D PCS G + + D+ + + + Sbjct: 300 DRVGFTNMESEVFDARVLDEEHIEAADVVIADVPCSGLGIMGKKNDIKYHISEEGMKDLV 359 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L + +VK GG +++S C+++ ++EE + +L E V + K Sbjct: 360 KLQREILANAVQYVKHGGTLIYSTCTINPAENEENFRWILDHF--DFEAVDITKELPK-- 415 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + + EG+I++ P + DGFF LRR Sbjct: 416 DLKIETAQEGFIQLLPGI--------HPCDGFFIGKLRRK 447 >gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B] gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B] Length = 427 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAIS-DACISPLYID 179 N++LR R + EL Q AG P W + L+ Y ++ + + +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVDANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424 >gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus 172560W] gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus 172560W] Length = 429 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 198/447 (44%), Gaps = 40/447 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + LL+ S + ++D L+ IV T++ +D L L + Sbjct: 1 MEKSGAYSNLLLNNLIEKS---TIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLKKKVE- 56 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-- 134 ++ LLR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE Sbjct: 57 --AWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGV 113 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + ++R+A + P W + + YG E + + + P V D T Sbjct: 114 PSVDEIKDPVERLAIATSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTV 173 Query: 190 AHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A ++ ++ F +G +QD S+ + + Sbjct: 174 EEAIELLASEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNT 233 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +VLD CAAPGGKTA + KV +LD+ ++ ++ +RL L + +D Sbjct: 234 GDAVLDSCAAPGGKTAHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDA 293 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FD +LVDAPCS G IRR PD+ +D D + + Q +L + + Sbjct: 294 RKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLL 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V+S C+++K ++E+V++K L+ P E + + + EG ++I Sbjct: 354 KQGGRLVYSTCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQI 410 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGF+ LR+ + Sbjct: 411 LPHYFA--------TDGFYIACLRKKV 429 >gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e] gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL R2-561] gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165] gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S] gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e] gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165] Length = 444 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ YLD V ++A+++ A + AK ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNM-GHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-DFTLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans C9-1] gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans C9-1] Length = 433 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 125/458 (27%), Positives = 211/458 (46%), Gaps = 46/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R +S+ L+ V+ K SL L +A + LS +D LV+ I LR L Sbjct: 1 MTKSINLRSLSAQLIERVVDKGESLNTALP-----AAQKKLSDKDSALVQEICFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++A++ ++ L K+ L L+ V + Q+ Y V +A + V A+ K Sbjct: 56 PQLEALIGRLMERPLTGKQRVLHYLIMVGLYQLEYTRVPAHAALAETVAGAEVLKRT-SL 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N + +R E + +Q + P W +RL++ + ++ + + P+ Sbjct: 115 KGLLNGVLRQFQRQREELLASIQDGPQRYLHPGWLLKRLQHAWPEQWQQIVEANNLRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + W L + P + LPGF +G VQD S Sbjct: 175 WLRVNRQHHNRDAWLAMLVEIDRNAQPADDVPDALRLDAPAPVSQLPGFDQGWVTVQDLS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A L N +LDLCAAPGGKT I A+V A+DV +RL+++ NL RL Sbjct: 235 AQRCALLLEPQNGEQILDLCAAPGGKTTHILEIAPEAEVMAVDVDAQRLKRVEENLQRLG 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A D+ + D +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKA-DVKQGDGRTPQQWCGDRQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVELVPLNSAYWKSIDM 403 ++L +KPGG ++++ CS+ +++ + ++ L+ E Sbjct: 354 SEILDAIWPHLKPGGTLIYATCSILPEENHQQIEAFLQRQHDAQAE-------------- 399 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ +P +++ P + G DGFF L + Sbjct: 400 SLRGAPANGLQVFPQ--------AEGGDGFFYAKLIKK 429 >gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 447 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 195/454 (42%), Gaps = 31/454 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 GM R + +LS V+ K + +L+ ++ L + D+ + + TL +L +I Sbjct: 9 GMENRGIVLDILSEVLDKGSFVHLVLNQALQ--KYQYLDKSDRAFITRVTEGTLEYLLQI 66 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D +++ + + K ++ LLR+SV QILY+D V D AV + AV+ A + + Sbjct: 67 DHIINKYSRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRFT-GLKG 125 Query: 123 LVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 VN +LR +SREK + + IP+W + E YG + I+ + + + Sbjct: 126 FVNGVLRTISREKASLVFDSPSLAYSIPQWMYDMWEKEYGSAKAEMIAASFLEDRPTWVR 185 Query: 182 VKFD---IETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASI 232 E L++ + + +I L F G VQDA+++ Sbjct: 186 CNLSRALREAILKSLDSQGVMVKELDCLPSVLAISGYDYMEGLECFQNGWIQVQDATSAF 245 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 +L ++D+CAAPGGK+ + V A D+S ++ + N+ R Sbjct: 246 VGELADPKEGDYIIDVCAAPGGKSLHLADKMKGTGMVEARDLSYQKTALIEENVARSGAA 305 Query: 290 AEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + DA + D V+ D PCS G I + PD+ + D + + + QR + Sbjct: 306 NIKAVVWDALVPDEDAREKADIVIADLPCSGLGIIGKKPDIKYNMTMDKMRELSRLQRDI 365 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +VKPGG +V+S C++D ++E + + P L P++ + D Sbjct: 366 LSVVWQYVKPGGTLVYSTCTIDPMENEGNAMWLSENFP----LEPVDLSGRLGEDFDEPS 421 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I+ P + DGFF RR+ Sbjct: 422 LKDGRIQFLPGI--------HPFDGFFISVFRRV 447 >gi|312113148|ref|YP_004010744.1| sun protein [Rhodomicrobium vannielii ATCC 17100] gi|311218277|gb|ADP69645.1| sun protein [Rhodomicrobium vannielii ATCC 17100] Length = 425 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 160/436 (36%), Positives = 242/436 (55%), Gaps = 13/436 (2%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ LL V+ S AF + RD+ RAI + LR L +++ + Sbjct: 2 ARRLAVFLLKSVLHDHQSFDEAFAGSSARDAFAAMESRDRAFARAIATIALRRLGQVEDM 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L L + + +L Q+ ++DVA +A + LAVEQAK + +RH L+N+ Sbjct: 62 LARFLEKPLAADAFEARAILIAGATQLAFMDVAPHAAIGLAVEQAKASRFSRHLGGLINA 121 Query: 127 ILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 +LRRV+ K + ++ A + P W ER YG+ I+ A + +DL+VK D Sbjct: 122 VLRRVNENKAAILSEQDAAVLNTPAWLWERWVAAYGEATAREITGAHLEEPPLDLSVKAD 181 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 TWA KL +LP G +RL + + G+AEG WWVQDA+A+IP L G + V Sbjct: 182 AATWAAKLEGEVLPWGSVRLSH-KGRVEEIEGYAEGAWWVQDAAAAIPALLLGDIAGKRV 240 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 DLCAAPGGKTAQL +GA+VT++D+S RL +L N RL L +I++ + D+ PK Sbjct: 241 ADLCAAPGGKTAQLAAAGAQVTSVDISASRLRRLGENAARLGLS-VEIVKANVGDWQPKD 299 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 F+A+L+DAPCS+TGTIRR+PD+ + + +DI A Q++LL ++ + PGG +VF+ Sbjct: 300 CFEAILLDAPCSATGTIRRNPDIAYLKTAEDIAALARVQKRLLAHALTLLAPGGTLVFAT 359 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL+ ++ E + +L V L+P+++A ++P G +R P Sbjct: 360 CSLEPEEGEAQIAALLADR-ADVRLLPVDAAALNLP--PEVVTPNGCLRTLP-------F 409 Query: 426 VSSGMDGFFAVALRRL 441 + GMDGFFA L R+ Sbjct: 410 HAGGMDGFFAARLTRI 425 >gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3] gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3] Length = 427 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPEQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLTLLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + +LV + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ANAQLVDSDPEQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +I P MDGF+ L + Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLTKK 425 >gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens ATCC 13124] gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens ATCC 13124] Length = 442 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 110/459 (23%), Positives = 200/459 (43%), Gaps = 42/459 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + +L V+ ++ ++ + + +D+ L+ +V T+++ ID Sbjct: 1 MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + + + S+ +LR ++ Q+ +LD V YA+V+ AV K + AK Sbjct: 58 IILSSFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR R + + + W E YGKE L I + Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKEDALRILRGLNTVP 174 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227 Y+ + V D + +L + + +I + EG+ VQD Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 SA + LF + V+DLC+APG K + +++ KV A D+ +L ++ N+D Sbjct: 235 ESAMLVAPLFDLRGDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLALIKENID 294 Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L ++ DA K D VL+D PCS G IR+ P++ W + +D+ + Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L ++++ GG +V+S C+L+K+++EEV+ + + + Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVERNSDCEV-----EKVFLGKA 409 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G + I P+ MDGFF L++ Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439 >gi|300721396|ref|YP_003710667.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Xenorhabdus nematophila ATCC 19061] gi|297627884|emb|CBJ88430.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Xenorhabdus nematophila ATCC 19061] Length = 437 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 113/456 (24%), Positives = 210/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ ++ V+ + SL+ ++ + +S +D+ L++ + +R L Sbjct: 1 MKNTYNLRSIAAKAITQVLEQGQSLSSVIPEL-----QQRVSDKDKALLQELCFGVMRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ L+ V + Q+ Y + +A + V A K + Sbjct: 56 PQLEWFMSQLMAKPLKGKQRIFHYLIMVGLYQLTYTRIPAHAALAETVNGAINLKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N + +R +E +E + + P+W +ER++ Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQQELVERSNKHINQHLHPKWLQERIQKSYPQNWQTIIDANNQKPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229 ++ + + L + P + SLPGF +G +QD S Sbjct: 175 WLRVNQLHHTANEYLSLLENANIEAELDTKHPNAIRLLNPCPVHSLPGFNQGWVTIQDRS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A +L N +LDLCAAPGGKT I +KV A+D+ ++RL++++ NL RL+ Sbjct: 235 AQGCAELLTPCNGEFILDLCAAPGGKTTHILEIAPKSKVLAIDIDEQRLKRVKENLQRLN 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI + Q Sbjct: 295 LHAV-VKTGDGRLPHEWAAGEQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIDQLVTLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++K G +V++ CS+ Q++ E ++ L+ V + + Sbjct: 354 SEILDAIWPYLKKNGTLVYATCSILPQENSEQIKAFLKRHTDAVLSETGSLEKPGT---- 409 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P++ G DGFF L + Sbjct: 410 ---------QIIPEV--------EGGDGFFYARLIK 428 >gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01] gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01] Length = 427 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAIS-DACISPLYID 179 N++LR R + EL Q AG P W + L+ Y ++ + + +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVDANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424 >gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 446 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 206/467 (44%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ LL D+ L+ +V T + Sbjct: 1 MKKQKTVREIALELIIKIENNQSYSHLLINDALKKQKLNLL---DKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +++IA + +P W +R YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIQDPVEKIAVETSLPVWLAKRWAKQYGNEQLREIGMAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V E +LN L S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293 Query: 282 NLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTANTMFAPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 ALPEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda ATCC 23685] gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda ATCC 23685] Length = 430 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 218/457 (47%), Gaps = 45/457 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ N R +++ LS V+ + SL+ +L SA + LS++D+ L++ + TLR Sbjct: 1 MKTTSYNLRAIAARTLSAVLDQGQSLSSVLP-----SAAQSLSEKDRALLQELCFGTLRV 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 LP+++ +L ++ +L K+ L LL V + Q++Y + +A + V+ A K + Sbjct: 56 LPQLEWILQQLMAKALTGKQRPLHYLLMVGLYQLVYTRIPPHAALAETVDGATALKRPQ- 114 Query: 120 FAKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISP 175 L+N +LR+ R++ Q+ A + P W +RL++ Y ++ + ++ P Sbjct: 115 LKGLINGVLRQFQRQQEALLLQSQQHASHWLHPSWLLKRLQHAYPEQWPAIVEANNQRPP 174 Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 +++ + + + L + + + + LPGF G VQDA Sbjct: 175 MWLRVNRRHHTRDAYLTLLQQAGIEAVAHDHFPDAIRLLVAQPVTRLPGFEHGWVTVQDA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA V L + +LDLC APGGKT ++ A+V A+D ++RL+++R NL RL Sbjct: 235 SAQHCVDLLDPHDGEQILDLCCAPGGKTTHILEAAPKAQVLAVDADEQRLKRVRENLQRL 294 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 AE + D + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 295 QQQAE-VRCGDGRTPDAWANGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAAL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L +KPGG++V++ CS+ Q++ E + L Sbjct: 354 QREILEAVWPLLKPGGVMVYATCSVLPQENREQILAFLAHHDDARL-------------A 400 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ P S G DGFF L + Sbjct: 401 ETGDAQQPGLQYLPQ--------SEGGDGFFYAKLIK 429 >gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163] gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163] Length = 429 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 127/456 (27%), Positives = 217/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ ++ V+ + SL+ LL + D +S +D+ L++ + LR L Sbjct: 1 MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVHQRD-----VSDKDRALLQELCFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ +L L+ V + Q+ Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ EL+QR A + P W R+E+ Y + + P+ Sbjct: 115 KGLINGVLRQFQRQQEELMQREATNSSHYLHPSWLLARIEHAYPDHWQSVVDANNQRPPM 174 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDAS 229 ++ + + L A P ++ LPGFA+G +QDAS Sbjct: 175 WLRVNRLHHTQEAYLDLLAQEGIEAFAHPDYADAIRLASPCAVDLLPGFAQGWATIQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V + +LDLCAAPGGKT ++ + V A+D+ + RL ++R NL RL Sbjct: 235 AQGCVYWLEPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDIDETRLGRVRENLLRLQ 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++AE + + D +C ++FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 295 MHAE-VKQGDGRYPDSWCAGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++++ +KPGG +V++ CS+ Q++ + V L LV ++ Sbjct: 354 KEIIDAIWPHLKPGGTMVYATCSILPQENAQQVTDFLSRH-ADATLVDTGTSEIPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGFF L + Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428 >gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi HY01] Length = 427 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPEQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQYHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + +LV + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ANAQLVDSDP------------- 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +I P MDGF+ L + Sbjct: 401 KQPGRQILPG--------EEDMDGFYYAVLTKK 425 >gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase B [Pectobacterium atrosepticum SCRI1043] gi|81643776|sp|Q6D000|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043] Length = 429 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 210/457 (45%), Gaps = 46/457 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ ++ V+ + SL+ LL + D +S +D+ L++ + LR L Sbjct: 1 MKSSYNLRSIAAKVVGQVLDQGQSLSALLPIHQRD-----VSDKDRALLQELCFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ +L L+ V + Q+ Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLHYTRIPPHAALAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N + +R E ++ + + P W R+E+ Y I +A Sbjct: 115 KGLINGVLRQFQRQQEELLQREATHSSHYLHPSWLLARIEHAYPNNW-RGIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V E + + L + P ++ LPGF++G VQDA Sbjct: 174 MWLRVNRLHHTREAYLNLLMQGGIEAFPHTEYSDAIRLASPCAVDQLPGFSQGWATVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA V + +LDLCAAPGGKT ++ + V A+DV + RL +++ NL RL Sbjct: 234 SAQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLGRVKENLLRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 ++AE + + D +C ++FD +L+DAPCS+TG IRRHPD+ W R DI + Sbjct: 294 QMHAE-VKQGDGRYPDSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVAL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L +K GG +V++ CS+ Q++ + V L LV ++ Sbjct: 353 QKEILDAIWPHLKTGGTMVYATCSILPQENTQQVTGFLSRHADAA-LVDTGTSEIPG--- 408 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I+I P + DGFF L + Sbjct: 409 ---------IQILPH--------ADSGDGFFYAKLVK 428 >gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854] gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161] gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818] gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900] gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854] gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900] gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818] Length = 444 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ YLD V ++A+++ A + AK ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNM-GHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLTILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-DFTLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp. laumondii TTO1] gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 429 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 111/455 (24%), Positives = 211/455 (46%), Gaps = 42/455 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ ++ V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKNTYNLRSITAKAINQVLDQGQSLSTVLPKL-----QQNITDKDKPLLQELSFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK--RDKENR 118 P+++ ++ +++ L K+ L LL V + Q+ Y + +A + V A + + + Sbjct: 56 PQLEWIIGQLMVKPLKGKQRILHYLLMVGIYQLAYTRIPAHAALAETVNGAVTLKHSQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LY 177 V +R + +E Q + + PEW R++ Y ++ I+ P ++ Sbjct: 116 GLINGVLRQFQRQQLQLMECTQNNSSHHLHPEWLLTRIQKAYPQQWQQLINANNKKPPMW 175 Query: 178 IDLT-VKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASA 230 + + + + + L + P + LPGF +G VQD SA Sbjct: 176 LRVNRIYHSRDEYLTLLRKSGIDAEPAPKSPSAIRIISPCPVTILPGFDKGWVTVQDLSA 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 V+L +N +LDLCAAPGGKT I ++V A+D+ ++R+++++ NL RL+ Sbjct: 236 QECVELLKPINGEKILDLCAAPGGKTTYILEIAPESQVVAVDIDEQRIKRVKENLKRLNC 295 Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 +A + D + + FD +L+DAPCS+TG IRRHPD+ W R +DI + Q Sbjct: 296 HAT-VKTGDGRHPEHWAENQQFDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQS 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L ++K G +V++ CS+ ++ + + L+ + A + Sbjct: 355 EILDAIWPYLKKSGTLVYATCSILPDENCQQISSFLKRH---------SDAKLAGTETND 405 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L +I P++ +G DGFF L + Sbjct: 406 CLGK----QIIPEL--------NGGDGFFYARLTK 428 >gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B] gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B] gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B] Length = 443 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 104/458 (22%), Positives = 192/458 (41%), Gaps = 40/458 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L+ V +R +++ E S + D+ LV IV T+++ ID Sbjct: 3 NPRETAVIILNKVFNERGYSNIIINKELNKSNLENI---DKALVTEIVYGTIQYKYTIDK 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D + + +LR ++ QI YLD + +AVV+ AVE +K+ +K + Sbjct: 60 IIDHFVGRGTSSVDKKVVNILRSAIYQIRYLDKIPSFAVVNEAVELSKK-LSTVTSSKFI 118 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R+ E + W ++ + YG I Sbjct: 119 NGVLRNYIRKTNENFYNKNNLVDRLSFEYSFEPWMVKKFISQYGNNIAEKILKGLNERPS 178 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 I + V + +L A+ + +SI + P F +G VQD Sbjct: 179 ITVRVNSLKTTFDEAYEELEALGYSVEEGVIAPEAIRILKGKSIENNPLFIKGSITVQDE 238 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA I + + D+C+APGGKT + +K+ A D+ +L+ + N+ R Sbjct: 239 SAMIVASALEPSKDDVIFDMCSAPGGKTTHIAELSEDKSKIKAFDIFDHKLKLIEENIKR 298 Query: 286 LHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + + DA + D VL+D PCS G +R+ P++ +T++ D+ + Sbjct: 299 LGITSIETEIKDASIHDVLLDDSADKVLIDVPCSGLGIMRKKPEIKYTKNEKDLKELVKI 358 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR ++ +V+ GG++V+S C+L+ ++++E ++ L + Sbjct: 359 QRDIMRNAAKYVRKGGVLVYSTCTLNLEENQENIRWFLDRHEDFMV-----EKVDFGKGE 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + I P+ MDGFF L+R+ Sbjct: 414 NLIYGKDNTLTILPNKY---------MDGFFIAKLKRI 442 >gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sanguinis PC909] gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp. HGF1] gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sanguinis PC909] gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp. HGF1] Length = 444 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 208/457 (45%), Gaps = 40/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR ++ L+ ++ L+ + S L+ +D+ + +V TL+ ++ Sbjct: 3 NARELALQTLTDILINGAYSNHALNEQIEKS---DLTIQDKNFMTELVYGTLQHQQLLNF 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 + ++ L+++++ QILYLD V ++A + AV AK+ + + KLV Sbjct: 60 YATPFFNGKVKG---WIRILIQMTLYQILYLDSVPEHAAISEAVNIAKK-RGGQFNGKLV 115 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N+ILR + R + LQ I A + P W + +G E+ +++A + Sbjct: 116 NAILREMMRNPLSNLQEIEDDAERLATKTSHPLWLIKLWIKQFGMEKTEQMANANNERVN 175 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQDAS 229 + + V T + R L +++ F +G ++VQD S Sbjct: 176 VTIRVNGVKGTKEELKQKLEEEGIQCRDGFLSPDALVITKGNVIKTKAFEQGWFYVQDES 235 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + ++ VLD C+APGGKT ++ V A D+ +++ + N+ RL Sbjct: 236 SMLVARALKPKHHTKVLDTCSAPGGKTTHVAEMMRQTGMVYAHDIYPHKIKLIEDNVKRL 295 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + DA P + FD+VLVDAPCS G +RRHP+V T+ +D+ Sbjct: 296 GLKNVVVNLQDATKLTECYPSESFDSVLVDAPCSGLGILRRHPEVKITKKPEDLDGVMAI 355 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L S VK GG +++S C++++++++++V+ LR P L + ++ Sbjct: 356 QKEILKTVASLVKYGGTLLYSTCTVNRKENDKMVEWFLREHPEFKLDQTLVERLPEVLNE 415 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G +++ P + DGFF L+R Sbjct: 416 QAST---GMVQLFPGDYQ--------TDGFFIACLKR 441 >gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii FSL F6-596] gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii FSL F6-596] Length = 446 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 205/467 (43%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVREIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +++IA + +P W R YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIEDPVKKIAVETSLPYWLARRWAEQYGIEQLREIGMAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V E +LN L S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFRLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 ALPAKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578] gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923] gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578] gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923] Length = 444 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ YLD V ++A+++ A + AK ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAGDIAKNM-GHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEQLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDE 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFTLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34] gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34] Length = 426 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 213/452 (47%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L +A + + +RD L++ I LR+LPR++ Sbjct: 1 MNVRATAAKVIYQVVDQGQSLSAALP-----AAQQDIRERDHALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ Y+ + +A V V K K+ + L+ Sbjct: 56 SITQALMDKPLKGKQRVFHHLILVGLYQLGYMRIPAHAAVAETVNATKTLKKPQ-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179 N+ILR R++ + + AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAILRNYQRQQETLDAQAISHDAGKYGHPSWLLKLLKESYPEQFADICEANNTKAPMWLR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASI 232 + + + + + L+A + T P + LPGF++G VQDA+A + Sbjct: 175 VNRQHNTRDAYRALLDAEDIATELHPQAADALRLVSPCDVTQLPGFSDGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V + +LD CAAPGGKTA ++ KV A+D + RL+++ NL RL+L A Sbjct: 235 AVDYLQPKADELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ + V+ L +P V L+ + A Sbjct: 355 DAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTPN-VTLIGSDPAKP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPG--------EESMDGFYYAVLTK 424 >gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116] gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116] Length = 427 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPEQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTQAMDALKLAAPCDVMKLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + +LV + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ANTQLVDSDP------------- 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +I P MDGF+ L + Sbjct: 401 KQPGRQILPG--------EEDMDGFYYAVLTKK 425 >gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-66c26] gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-76w55] gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-97b34] gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-37x79] gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile CD196] gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile R20291] gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-32g58] gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile CD196] gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile R20291] Length = 441 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 207/460 (45%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR V +L + + ++ + + +S D+ L ++ + +D Sbjct: 1 MDAREVGFKVLCDIEKNDNYSNIAINKHFKN---LEISDMDRGLATELIYGVIENKYYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + ++ LR+ QIL+LD ++DYA V+ V+ +K+ ++ + Sbjct: 58 YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115 Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+ILR R K ++ ++ W + + +G+E + +A Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEK 175 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226 I + E KL+ + + E ++I F G++ +Q Sbjct: 176 PSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ I ++ VLD+C+APGGK+ L+ + +V A D+ + +L+ + + Sbjct: 236 DISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTV 295 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L + DA + FD VL D PCS G IRR P++ + + +++ Sbjct: 296 NRLGLKNVFVERFDASEIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDIT 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+K+L +VK GG +V+S C++ ++ +V + + E VP++ ++ Sbjct: 355 SIQKKILENASKYVKVGGTLVYSTCTIQDVENINIVTSFVEENHN-FEFVPID-----TV 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + +G+++I P++ G+DGFF L+R+ Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440 >gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z] gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z] Length = 462 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 200/464 (43%), Gaps = 48/464 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 ++ R ++ ++ V+ + SL+ L+ L +D L++ I R LPR Sbjct: 24 KNLSVRAAAAQIILQVLDQGKSLSALIPET-----QLKLKPQDLPLLQEICFGICRVLPR 78 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + QILY + +A ++ V AK K + +F Sbjct: 79 LEWIIRLLMDKPLKGKTRIVHCLLLVGLYQILYTRIPQHAAINETVNAAKELKSD-NFRG 137 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 L+N +LRR RE+ + + PEW +L+ Y R + ++ P+++ + Sbjct: 138 LLNGVLRRFLREQESVLATVDKHWQTNHPEWLVNKLKKIYPNWRDIIDANNRKPPMWLRV 197 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPV 234 +L A T P + LP FAEG VQD A Sbjct: 198 NRIHGSTENYRQLLAENDMTACTDENPHALRLESPMPVQRLPRFAEGWVTVQDVHAQWSG 257 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V A+DV + RL+++ NL RL+ A Sbjct: 258 ILLEPQNGELILDACAAPGGKTTHILEQAPQAKVVAVDVEENRLKRITENLARLNQQAIV 317 Query: 293 II-------------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 I FD +L+DAPCS++G IRRHPD+ W R DI Sbjct: 318 ICGDAARPETWLEQAAQQISGRKSAVQFDRILLDAPCSASGVIRRHPDIKWLRQEQDIAP 377 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q ++L + +KP G+++++ CS+ +++ + + L +L+PL + + Sbjct: 378 LVDIQYQILTALWATLKPNGVLLYATCSVLPEENGRQIARFLAEH-TDAQLMPLPFSPPQ 436 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I + P +G DGF+ LR+ Q Sbjct: 437 EIGH----------QFLP--------TENGGDGFYYAKLRKTAQ 462 >gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b] gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b] Length = 428 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 211/457 (46%), Gaps = 45/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ L+ V+ K SL+ +L A + LS +D L++ + +R L Sbjct: 1 MKKNTNLRSLAAQLIERVVDKGESLSAILP-----GAQKSLSDKDGALLQELCFGVMRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++A++ ++ L K+ L L+ V + Q+LY V +A + V A+ K + Sbjct: 56 PQLEALISKLMERPLTGKQRVLHYLIMVGLYQLLYTRVPPHAALAETVAGAEVLKR-ANL 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N + +R + + + + P W +RL+ + E+ I +A Sbjct: 115 KGLLNGVLRQFQRQQEALVAEVDQGTQRHLHPAWLLKRLQTAWP-EQWQQIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDAS 229 + L V +TW L + ++ LPGF +G VQD S Sbjct: 174 MWLRVNRQHHPRDTWLALLEETEKSAFVGDAPDSLRLEAPTAVGQLPGFDQGWVTVQDLS 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A L N S+LDLCAAPGGKT ++ + V A+D+ ++RL ++R NL RL Sbjct: 234 AQRCALLLEPQNGESILDLCAAPGGKTTHILEIAPQAAVLAVDIDEQRLTRVRENLQRLG 293 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A D+ + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 294 MQA-DVRQGDGRTPAEWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELASLQ 352 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R++L +K GG ++++ CS+ +++ + + L + P + A Sbjct: 353 REILHAVWPRLKSGGTLLYATCSVLPEENHQQITAFLATHPDAIAE-------------A 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E ++ P + G DGFF L + Sbjct: 400 LPHGQENGWQVFP--------ATDGGDGFFYAKLMKK 428 >gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 429 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS N R +++ ++ V+ + SL+ LL + R +S +D+ L++ + LR L Sbjct: 1 MKSSYNLRSIAAKVVGQVLDQGQSLSALLPVH-----QREVSDKDRALLQELCFGLLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ +L L+ V + Q+ Y + +A + VE A K+ + Sbjct: 56 PQLEWCIQQLMAKPLTGKQRTLHYLIMVGIYQLQYTRIPPHAALAETVEGAVTLKKPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPL 176 L+N + +R E I+ + + P W R+E Y + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQEELIQREATHSSHYLHPSWLLARIERAYPNHWQGIVEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + E + + L + P ++ LPGF++G VQDAS Sbjct: 175 WLRVNRLHHTREAYLNLLVQEGIEAFPHAEYSDAIRLASPCAVDQLPGFSQGWATVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V + +LDLCAAPGGKT ++ + V A+DV + RL +++ NL RL Sbjct: 235 AQGCVYWLDPQDGEQILDLCAAPGGKTTHILEAAPKSHVLAVDVDETRLSRVKENLLRLQ 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++AE + + D +C ++FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 295 MHAE-VKQGDGRYPDSWCEGRVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L ++K GG +V++ CS+ Q++ + V L +L+ + Sbjct: 354 KEILDAIWPYLKTGGTMVYATCSILPQENAQQVTDFLTRH-ADAKLIDTGTREMPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGFF L + Sbjct: 409 --------IQMLPH--------ADGGDGFFYAKLVK 428 >gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia mollaretii ATCC 43969] gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia mollaretii ATCC 43969] Length = 431 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 122/456 (26%), Positives = 217/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGLH-----NSISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPHHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNESRYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + L P ++ +LPGF G VQDAS Sbjct: 175 WLRVNRLHHTRSEYLELLKQADIDAVPHDLYSDALRLITPCAVSALPGFELGWATVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL++++ NL RL Sbjct: 235 AQGCVDLLDPHNGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLDRVKENLQRLK 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D D+C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHAV-VRVGDGRTPEDWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ ELV + Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIAAFLQRH-SEAELVETGTTAVPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF L + Sbjct: 409 ----------------KQNLPHPEDGDGFFYAKLIK 428 >gi|126700200|ref|YP_001089097.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile 630] gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Clostridium difficile] Length = 441 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 207/460 (45%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR V +L + + ++ + + +S D+ L ++ + +D Sbjct: 1 MDAREVGFKVLCDIEKNDNYSNIAINKHFKN---LEISDMDRGLATELIYGVIENKYYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + ++ LR+ QIL+LD ++DYA V+ V+ +K+ ++ + Sbjct: 58 YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115 Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+ILR R K ++ ++ W + + +G+E + +A Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEK 175 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226 I + E KL+ + + E ++I F G++ +Q Sbjct: 176 PSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ I ++ VLD+C+APGGK+ L+ + +V A D+ + +L+ + + Sbjct: 236 DISSMIVGKVINPKEGSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTV 295 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L + DA + FD VL D PCS G IRR P++ + + +++ Sbjct: 296 NRLGLKNVFVERFDASEIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDIT 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+K+L +VK GG +V+S C++ ++ +V + + E VP++ ++ Sbjct: 355 SIQKKILENASKYVKVGGTLVYSTCTIQDVENINIVTFFVEENHN-FEFVPID-----TV 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + +G+++I P++ G+DGFF L+R+ Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440 >gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ4037] Length = 427 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 123/452 (27%), Positives = 207/452 (45%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LP F +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPSFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424 >gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus AQ3810] Length = 427 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 210/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+C L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSCALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLTK 424 >gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459] gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 444 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWTDQYGIEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFTLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262] gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262] Length = 446 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 123/467 (26%), Positives = 209/467 (44%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIKDPVQKIAVETSLPEWLARRWADQYGLEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V E +LN A L S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRAEQLIKELNDQGITATRNEFIDEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 VLPEKLAQIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 444 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 119/463 (25%), Positives = 207/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG +++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDEVKDPVQKIAVETSLPEWLAKRWADQYGVQKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + + S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTQNEFIDEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHQDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFSLEPVTL--- 409 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + ++++ P + G DGFF +LR++ Sbjct: 410 --PEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKV 442 >gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96] gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96] Length = 435 Score = 262 bits (669), Expect = 9e-68, Method: Composition-based stats. Identities = 114/450 (25%), Positives = 208/450 (46%), Gaps = 30/450 (6%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RLV++ +LS V++ SLT LD + S +D+ ++A+ R R+D Sbjct: 1 MNTRLVAARVLSRVLQDGQSLTAALDNAFPSIE----SSKDRAFIQALCYGVCRQYHRLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +L +L L ++ L V + Q+ ++ V +A V V A++ + V Sbjct: 57 FILSQLLDKPLK--DTDVKSLALVGLYQLKFMRVKPHAAVSETVLAARKKPWAKSLINAV 114 Query: 125 NSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV 182 R + + P+W +++E + ++ + + + + P+ + + + Sbjct: 115 LRTYLREQEGLEHKADKCQVAALSHPDWLIKQIEQDWPEQALNIFLENNQQPPMVLRVNL 174 Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235 K E + L + + P + LPGF++G+ VQD +A + Sbjct: 175 SKTSREDYLQLLAGQDIAAEPVSFCRSAIRLDKPVPVDLLPGFSDGLVSVQDTAAQLAAG 234 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAED 292 L VLD+CAAPGGKTA ++ S ++ A+D+ + R++++ NL RL+L+A Sbjct: 235 LLDVRPGHRVLDVCAAPGGKTAHILESQQQLKELVAVDIDESRMQRVSENLQRLNLHATL 294 Query: 293 I--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + K FD +L+DAPCS+ G IRRHPD+ R +DI + Q+ +L Sbjct: 295 VVGDAANPASWWDGKPFDRILLDAPCSALGVIRRHPDIKLLRRAEDIGQLQALQKNILQA 354 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + PGG+++++ CS+ KQ++E+ VQ L VEL + + + A ++ Sbjct: 355 VWPLLAPGGLMLYATCSILKQENEQQVQAFLAEHSDAVELPLFSDSSLGT--TAWGINGA 412 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I S MDGF+ + + Sbjct: 413 CGRQIL--------TGESAMDGFYYACISK 434 >gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858] gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194] gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503] gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262] gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017] gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858] gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503] gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262] gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194] gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017] gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes str. Scott A] Length = 444 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFTLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071] gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071] gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes FSL F2-208] Length = 444 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM 9799] gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM 9799] Length = 441 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 125/451 (27%), Positives = 198/451 (43%), Gaps = 39/451 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R +++ ++ V+ + SL+ L RD+ L+ I +R LP++D Sbjct: 5 NLRALAASVVIQVIDQGHSLSQALPKAQSKLR----DARDKALLAEIAYGVMRQLPQLDT 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L L KK + LL + Q+ + V +AVV +V A R+ LVN Sbjct: 61 QLRRCLQKPLSGKKRIIHGLLLAGLYQLKHTRVGSHAVVAESVN-ACREIGAPGMTGLVN 119 Query: 126 SILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--D 179 +LR + R+ E + P WF +RL+ Y + + +P + Sbjct: 120 GVLRALDRDMDALQAEQFDAPSVHYRHPGWFIKRLQQAYPDQWAAILDANNEAPPLWLRN 179 Query: 180 LTVKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 ++ + + +L AV P + LPGF +G VQD SA I Sbjct: 180 NALQQSRDAYLQQLADAGVEAVAGEEQEAIRLPKPRDVTGLPGFPKGAVSVQDHSAQISG 239 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAE 291 +L VLD CAAPGGK+ ++ ++ ALDV RL +++ NLDRL L A Sbjct: 240 RLLNAQPGERVLDACAAPGGKSCHILEQQPQLAELVALDVDPWRLTRVQQNLDRLGLTAT 299 Query: 292 --DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 D + + FD +L+DAPCS+TG IRR+PD W R +DI + A Q K+L Sbjct: 300 LKCGDGTDPQSWWDGQAFDRILLDAPCSATGVIRRNPDSKWLRRDEDIAQLAELQGKILR 359 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +KPGG +V++ CS+ ++ + +Q L+++P + I + Sbjct: 360 ACWQMLKPGGTLVYATCSVLPDENVQQIQAFLQNTPDAM---------LDPIVAGEDDTT 410 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 GW ++ P G DGF+ L + Sbjct: 411 PGW-QLLP--------TVEGGDGFYYARLIK 432 >gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC 15579] gi|187772523|gb|EDU36325.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC 15579] Length = 442 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 124/458 (27%), Positives = 206/458 (44%), Gaps = 42/458 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L+ + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLYEGAYSNIVLNKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ + ++KLV Sbjct: 60 IIQSYLKNPIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEMSKKI--SIKYSKLV 117 Query: 125 NSILRRVSREKIELLQR--------IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 N +LR R + I P+W + + YG E I Sbjct: 118 NGVLRNYIRTYKNKKFYDDRNNLEKFSFIYSYPKWLIKMFISQYGIEIAEKILKGLNERP 177 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 I + V D + KL+ + ++I P F EG VQD Sbjct: 178 NITVRVNNLKIDYDEAFEKLDEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGDITVQD 237 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 SA + VLDLC+APGGKT + I + +KV A DV + +L + N Sbjct: 238 ESAMLVAPSMELTEESIVLDLCSAPGGKTTHISEIINNKSKVYAYDVHQNKLSLIEENAK 297 Query: 285 RLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL + + DA + + VL+D PCS G IR+ P++ WT++ +I Sbjct: 298 RLGIKNVETDVCDAAIFNKELKEIAHRVLMDVPCSGLGIIRKKPEIKWTKNEKEIKNIID 357 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QRK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 358 IQRKIMNNGASYLKKGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI- 415 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 ---IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Ba4 str. 657] gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Ba4 str. 657] Length = 442 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A D+ + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + VL+D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25] Length = 427 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 208/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P ++ LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLKPQDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + L + Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQLLDSDPDQPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EEDMDGFYYAVLSK 424 >gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas salmonicida subsp. salmonicida A449] gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas salmonicida subsp. salmonicida A449] Length = 430 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 128/454 (28%), Positives = 204/454 (44%), Gaps = 43/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ ++ V+ + SL+ +L +A ++ RD+ L++ + TLR+LPR+D Sbjct: 1 MKTRAQAALVIQQVLDQGQSLSAVLP-----AAQEKVAPRDRALLQELCYGTLRWLPRLD 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A + ++ L K L+ V + Q++Y + +A V V K K L+ Sbjct: 56 AAVGEMMDKPLKNKSRIFHYLILVGLYQLIYTRIPAHAAVAETVNAVKLLKGT-SLRGLI 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR R +L RI + PEW +RL Y ++ I +A + + Sbjct: 115 NGVLRNFQRSAEVILLRIDRVPSIRLGHPEWLTKRLRQAYPEDW-EFIMEANNQRPPMWI 173 Query: 181 TVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + L L E P + LPGF G VQD +A Sbjct: 174 RNNSQRQGREQMLARMAEVGINAVAGQEGEDCILLERPCDVTKLPGFETGDCSVQDGAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 +L VLD CAAPGGKTA L+ V A+D + RL++++ NLDR+ L Sbjct: 234 QAARLLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADENRLKRVQENLDRIGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + P+ FD +L+DAPCS+TG IRRHPD+ W R DI + A QR+ Sbjct: 294 QARVIHGDASTPELWWPQGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRR 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L+ S +K GG ++++ CS+ +++ E ++ L ++P LVPL++ Sbjct: 354 ILIALWSKLKSGGTLLYATCSVLPEENREQIRAFLATTPDAT-LVPLHAQDTPDCP---- 408 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P E MDGF+ L + Sbjct: 409 -----GRQFLPGEAE--------MDGFYYAKLIK 429 >gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101] gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium perfringens SM101] Length = 442 Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 109/459 (23%), Positives = 201/459 (43%), Gaps = 42/459 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + +L V+ ++ ++ + + +D+ L+ +V T+++ ID Sbjct: 1 MNARKIIVEILDNVLLNGAYSNIEINKQFASN---DIDPKDKGLITEVVYGTIKYKKMID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + + + S+ +LR ++ Q+ +LD V YA+V+ AV K + AK Sbjct: 58 IILSNFVA-DIGKIDESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKET--EPNLAKF 114 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR R + + + W E YGK+ L I + Sbjct: 115 VNGVLRNYLRNENKNFKVGLRNNEALCYDFSFDRWMIEMFIKQYGKDDALRILRGLNTIP 174 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQD 227 Y+ + V D + +L + + +I + EG+ VQD Sbjct: 175 YVTVRVNTCKADYDEVYERLEEEGYDIEEGAFSPEAIIIKKGSAIEKNKLYQEGLITVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 SA + LF ++ V+DLC+APG K + +++ KV A D+ +L ++ N+D Sbjct: 235 ESAMLVAPLFDLKDDEQVMDLCSAPGTKATHIGELMMNKGKVVAFDIHDHKLTLIKENID 294 Query: 285 RLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L ++ DA K D VL+D PCS G IR+ P++ W + +D+ + Sbjct: 295 RLGLTNVEVELGDATKINSKYINWADRVLLDVPCSGLGIIRKKPEIKWNKKNNDLTEVVK 354 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L ++++ GG +V+S C+L+K+++EEV+ + + + Sbjct: 355 VQKEILKNAWNYLREGGELVYSTCTLNKKENEEVIDWFVEKNSDCEV-----EKVFLGKA 409 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G + I P+ MDGFF L++ Sbjct: 410 DNVVYNDNGSVTILPNKY---------MDGFFIAKLKKK 439 >gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua FSL S4-378] Length = 446 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 123/467 (26%), Positives = 209/467 (44%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIKDPVQKIAVETSLPEWLARRWADQYGLEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V E +LN A L S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRAEQLIKELNDQGITATRNEFIDEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFESETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 VLPEKLAQIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii B565] Length = 430 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 128/455 (28%), Positives = 203/455 (44%), Gaps = 43/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ ++ V+ + SL+ +L +A ++ RD+ L++ + TLR+LPR+D Sbjct: 1 MKTRAQAALVIQQVLDQGQSLSAVLP-----AAQEKVAPRDRALLQELCYGTLRWLPRLD 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A ++ ++ L K L+ V + Q++Y + +A V V K K L+ Sbjct: 56 AAVNEMMDKPLKNKSRIFHYLILVGLYQLIYTRIPAHAAVAETVNAVKLLKGT-SLRGLI 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR R +L RI + PEW +RL Y + I +A + + Sbjct: 115 NGVLRNFQRSAEVILLRIDRVPSIRLGHPEWLTKRLRQAY-HDEWEFIMEANNQRPPMWI 173 Query: 181 TVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 ++ L L E P + LPGF G VQD +A Sbjct: 174 RNNSQRQSRDAMLARMAEAGINAVAGEEGEDCILLERPCDVTKLPGFEVGDCSVQDGAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 L VLD CAAPGGKTA L+ K V A+D + RL++++ NLDR+ L Sbjct: 234 QAAALLDPQPGEWVLDACAAPGGKTAHLLERQPKLAGVVAVDADENRLKRVQENLDRIGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + P+ FD +L+DAPCS+TG IRRHPD+ W R DI + A QR+ Sbjct: 294 TAKVIHGDAAAPEQWWPEGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQRR 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L +K GG ++++ CS+ +++ E ++ L ++ +LVPL+ Sbjct: 354 ILNALWGKLKSGGTLLYATCSVLPEENREQIRAFLAATK-DAKLVPLHEQDTPDCP---- 408 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P E MDGF+ L +L Sbjct: 409 -----GRQFLPGEAE--------MDGFYYAKLVKL 430 >gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402] gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 434 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 107/462 (23%), Positives = 198/462 (42%), Gaps = 47/462 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R V+ +L V+ + L++ + D+ L+ +V TL+ Sbjct: 1 MK--HNVRSVALEILDAVLTEGAYSNLLINEAIKKG---YVEPVDRALLTELVYGTLQRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + +++ +++L+ +S+ Q +YLD V D+A+++ AVE KR + + Sbjct: 56 LTLEFYAAPYIKTNIKG---WMRRLILMSIYQSVYLDKVPDHAIINEAVEITKR-RGSMG 111 Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN+ILR R + L+R++ + P W + +G + L +++ Sbjct: 112 GANTVNAILRNFQRNPLRDLSEIKDDLKRLSVATSTPLWLIKHWNTHFGFDTTLEMAEEF 171 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224 ++ + V E +L L IV F G Sbjct: 172 LNYPDTTVRVNTTKITPEDAIKRLTEAGYTVEQSEIIPECLTIDGPPIVQHELFKHGFLS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA---LDVSKRRLEKLRC 281 VQDAS+ + + + ++LD C+APGGK + + DV +++ ++ Sbjct: 232 VQDASSMLVANVLDPQPDETILDACSAPGGKACHIAEKMNRTGHIDSHDVHPHKIDLIQY 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ RL L DA K +D VLVDAPCS G ++R P++ + + DI Sbjct: 292 NITRLSLRNIHPSVHDATIPYDK-QYDRVLVDAPCSGFGVMKRKPEIKYDKTQKDIDTLW 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + VKPGG++V+S C++++ ++E VV ++ + E+ P+ Sbjct: 351 PLQLEILKNAANAVKPGGVLVYSTCTIEQMENENVVYSFIKQN-EDFEIEPIELP----- 404 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + +++ P DGFF LRR + Sbjct: 405 ----VIGKQKLLQVLPQDF--------NSDGFFIAKLRRKCK 434 >gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum F str. Langeland] gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum F str. Langeland] Length = 442 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEMAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A DV + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + VL+D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|331091584|ref|ZP_08340420.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 2_1_46FAA] gi|330403611|gb|EGG83167.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 2_1_46FAA] Length = 449 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 96/463 (20%), Positives = 187/463 (40%), Gaps = 38/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M ++ R + +L + ++ +L ++ L ++++ + +V TL L Sbjct: 1 MTKQISEREIVLGILLEITKEGGYSHIVLRNTLE--KYQYLDKKERAFITRVVEGTLEHL 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + + K ++ ++R SV QI Y+D V + AV + AV+ A++ K Sbjct: 59 IEIDYIINQFSKVKVNKMKPVIRTIIRNSVYQIKYMDSVPNSAVCNEAVKLAEK-KGFFQ 117 Query: 120 FAKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR +K +++ ++ +P W E Y + I Sbjct: 118 LKGFVNGVLRNIDRNVSNIQYPDKKNMVEYMSIKYSMPIWILEEWGKSYDFSVIERILQG 177 Query: 172 CISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGV 222 + + E KL + + + F EG Sbjct: 178 FLEEKGTTIRCNLNKISKEELVEKLKKENVRVKEHAYLPYALEISGYNYLGDMESFREGD 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 + VQD S+ + ++ V+D+C+APGGK + V A D++ ++ + Sbjct: 238 FQVQDISSMLVSEIADPKKEDYVIDVCSAPGGKALHMADKLGETGYVEARDLTDYKVSLI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R + ++ DA K+ D VL D PCS G + + D+ + + Sbjct: 298 EDNIERSGMKNIRAVKQDALICDEESKEKADIVLADLPCSGLGVLGKKTDIKYKMTRETQ 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + QRK+L ++ KPGG +V+S C+++++++ V+ L+ P L S Sbjct: 358 QELKKLQRKILSVVQNYTKPGGTLVYSTCTINEEENIGNVRWFLKQYPQ----YQLVSVE 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + D EG +++ P + DGFF R+ Sbjct: 414 DRLCDELKPSVKEGCLQLLPGI--------HNSDGFFIAKFRK 448 >gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua FSL J1-023] Length = 446 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 209/467 (44%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIKDPVQKIAVETSLPEWLARRWADQYGLEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + + S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRAEQLIKELNDQGITVTRNEFIDEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLVAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 VLPEKLAQIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1] gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1] Length = 425 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 123/452 (27%), Positives = 209/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L L + + RDQ L++ I LR LPR++ Sbjct: 1 MNVRAAAANILFQVVDKGQSLSSALPL-----GQQQVKPRDQALLQEICFGALRILPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +V ++ L K+ L+ V + QI ++ + +A V VE K K R L+ Sbjct: 56 SVASELMDKPLKGKQRVFHHLILVGIYQIGHMRIPAHAAVGETVEATKTLKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R + +L + AG P W + L+ Y ++ + + +P+++ Sbjct: 115 NAVLRNYQRNQEQLDEISVSHNAGKYGHPSWLLKLLQESYPQQWEMIVEANNTKAPMWLR 174 Query: 180 LTVKF-DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASI 232 + + + + + L + + P + +LPGF +G VQDA+A + Sbjct: 175 VNHQHLNRDDYQALLKNEGIDSTAHSEALDALKLAAPCDVNNLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA ++V A+D + RL+++ NL RL L A Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTKDSQVVAIDCDETRLKRVHDNLKRLKLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++ Sbjct: 295 KVVCGDARTPSEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIEALAELQREIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q+++E V+ L + +L+ + Sbjct: 355 DAMWQQLKVGGTLVYATCSITPQENKEQVKAFLART-DNAQLIDSDIDNP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L++ Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLKK 424 >gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14] gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14] Length = 426 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 120/452 (26%), Positives = 209/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L +A + + +RD L++ I LR+LPR++ Sbjct: 1 MNVRATAAKVIYQVVDQGQSLSAALP-----AAQQDIRERDHALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ Y+ + +A V V K K+ + L+ Sbjct: 56 SITQALMDKPLKGKQRVFHHLILVGLYQLGYMRIPAHAAVAETVNATKTLKKPQ-LRGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179 N+ILR R++ EL AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAILRNYQRQQEELDTKAISHDAGKYGHPSWLLKLLKESYPEQFADICEANNTKAPMWLR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASI 232 + + + + + L+A + T P + LPGF++G VQDA+A + Sbjct: 175 VNRQHNTRDAYRALLDAEDIATELHPQAADALRLVSPCDVTKLPGFSDGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD CAAPGGKTA ++ KV A+D + RL+++ NL RL+L A Sbjct: 235 AVDYLQPKAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ Sbjct: 295 TVLCADARYPEQWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ + V+ L + + + + Sbjct: 355 DAMWLQLKPGGTLVYATCSITPQENCDQVKAFLARTSDATLIGSDPAKPGR--------- 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 406 -----QILPG--------EESMDGFYYAVLTK 424 >gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168] gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168] Length = 440 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 187/450 (41%), Gaps = 36/450 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R V+ +L + K +L+ E + +RD+ + +V LR R+D + Sbjct: 4 SRKVAIKVLIEID-KGAYSNLVLNKELNKVS----DKRDRAFITELVYGVLRQKKRLDYM 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + + LRV++ QI Y D V A V VE K + K N Sbjct: 59 LSCFSKRPLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKSFTGH-GAVKFTN 117 Query: 126 SILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +LR + +A PEW + N YG + + Sbjct: 118 GVLRSYLRNKDKIIFPDRNQNPVNFLANYYSYPEWIIKEWINKYGFKDTERLCQYLNDSP 177 Query: 177 YIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + L + +I LP F +G + VQ Sbjct: 178 PVTVRYNRLQVDQKRFLEVFKKYNIEVESTTVPDCYVVNNFNTIKDLPLFKDGGFIVQGP 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +A++ + G VLD+ A PGGKT L + + ++ ALD+ + +L+ + N +R Sbjct: 238 AATLAGFVLGPDPGNRVLDMSAGPGGKTTHLAELMNNRGEIIALDIYEHKLKLIEENCNR 297 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + I++D DY ++ FD VLVDAPC+ G + P++ W R +D+ K Q+ Sbjct: 298 LGVNIVKTIKVDGRDYTSQEKFDMVLVDAPCTGLGLVAHKPEIKWNRTENDVKKLQEIQK 357 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK-SIDMA 404 LL +S V+ GG V++S C+L + ++EEVV +VL+ + V V + + Sbjct: 358 SLLHNALSLVRDGGFVLYSTCTLTRAENEEVVNQVLQQTDFVVSPVNMEKRLSEIGFSGK 417 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++PEG++ P S +GF+ Sbjct: 418 FKITPEGYLEFFP--------PESKTEGFY 439 >gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-63q42] Length = 441 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 99/460 (21%), Positives = 207/460 (45%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR V +L + + ++ + + +S D+ L ++ + +D Sbjct: 1 MDAREVGFKVLCDIEKNDNYSNIAINKHFKN---LEISDMDRGLATELIYGVIENKYYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + ++ LR+ QIL+LD ++DYA V+ V+ +K+ ++ + Sbjct: 58 YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115 Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+ILR R K ++ ++ W + + +G+E + +A Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANNEK 175 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226 I + E KL+ + + E ++I F G++ +Q Sbjct: 176 PSIYIRTNTLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ I ++ +LD+C+APGGK+ L+ + +V A D+ + +L+ + + Sbjct: 236 DISSMIVGKVINPKEGSFILDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLINSTV 295 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L + DA + FD VL D PCS G IRR P++ + + +++ Sbjct: 296 NRLGLKNVFVERFDASEIDENSISKFDYVLADVPCSGFGIIRRKPEIKY-KKEEELKDIT 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+K+L +VK GG +V+S C++ ++ +V + + E VP++ ++ Sbjct: 355 SIQKKILENASKYVKVGGTLVYSTCTIQGVENINIVTSFVEENHN-FEFVPID-----TV 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + +G+++I P++ G+DGFF L+R+ Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440 >gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913] gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913] Length = 431 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 208/457 (45%), Gaps = 41/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + N R +++ L V+ K SL L A + LS +D+ L++ I LR+L Sbjct: 1 MSNVSNVRALAAETLYNVVDKGASLNQELPF-----ASQGLSPKDKALLQQICYGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P ++ ++ L K+ Q LL V + Q+ ++ V +A + V A + Sbjct: 56 PSLENYCQHLVEQPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALQQLRALGL 114 Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS-P 175 L+N+ILR R++ + Q + P WF ++++ Y + P Sbjct: 115 KGLINAILRSFQRQQAELEEKAKQIPVCLYNHPNWFIKQVKEAYPDSWEDILEANQQQAP 174 Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 +++ + +F + ++ L A + P + SLP F G VQDA Sbjct: 175 MWLRVNQSQFSTQEYSEMLTANDIEHTLNPDFIDGIKLSKPRDVFSLPEFDTGACSVQDA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287 +A + + N S+LD CAAPGGKT ++ + A V ALD RLE+++ NL+R+ Sbjct: 235 AAQLAARYLDPQNGDSILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLERIG 294 Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L A+ + ++ FD +L+D PCS+TG IRRHPD+ W R DI + Q Sbjct: 295 LGADLQCGDASQPHTWWDEEQFDRILLDVPCSATGVIRRHPDIKWLRRASDINDLSTLQG 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L +KPGG +V++ CS+ Q++++ V K L ++ E +PL+S K+ Sbjct: 355 DILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANN-EDAEHIPLHSEDTKTTP--- 410 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +++ P DGF+ L + Sbjct: 411 ------GLQLLPGE----------SDGFYYAKLVKKA 431 >gi|149912797|ref|ZP_01901331.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. AzwK-3b] gi|149813203|gb|EDM73029.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. AzwK-3b] Length = 427 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 139/440 (31%), Positives = 221/440 (50%), Gaps = 19/440 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +AR + HLL V+ + ++ L+ A L D+ + + TLR Sbjct: 1 MSQPAPSARRSAVHLLDQVLGEGRLMSDLIS----SGALDRLDPADRARAQRLATDTLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + R D +L L P + +LR+ ++ + + VV+ V + + Sbjct: 57 IERADRLLKRHLRKPPP---LHVFNILRLGTVELC-MGGDAHGVVNDLVALVGSHRRYGN 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L+N++LR+++ + + + +P W +E L + +G V + A + +D Sbjct: 113 LKGLINAVLRKMAADGPGTWNDL-RVPRLPRWLREPLVSAWGAGAVAQMEQAQFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT + D A +L +LPTG +RL + + +LPG+ G WWVQDA+A++PV++ Sbjct: 172 LTARGDAVALAERLQGTLLPTGSVRLSDA-GQVSALPGYTSGDWWVQDAAAALPVRVLDP 230 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + +VLDLCAAPGGKT QL +GA VTALD+S++R+ ++R NL+R A I DA Sbjct: 231 QPHEAVLDLCAAPGGKTLQLCAAGANVTALDLSEKRMARVRENLERCGYSANCI-TGDAL 289 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 ++ +DAVL+DAPCS+TGTIRRHPD+ + +D + Q +L +S +KPGG Sbjct: 290 EHA-GGPYDAVLLDAPCSATGTIRRHPDLPFAKDGSEFGALIALQAAMLDHALSLLKPGG 348 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E V + L P V + ++ EG +R+ PD Sbjct: 349 RLVFCTCSLLPDEGECQVDEALGRHPG--LSVDRGAVAGLPGIDPAWITDEGGLRLRPDH 406 Query: 420 LEKIDGVSSGMDGFFAVALR 439 GMDGF+ LR Sbjct: 407 W----PDLGGMDGFYIACLR 422 >gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK] gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK] Length = 431 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 210/452 (46%), Gaps = 38/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L +A + + +RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAAQVVFQVVDQGQSLSAALP-----AAQQNIRERDHALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V V K K+ + L+ Sbjct: 56 SITTHLMDKPLKGKQRVFHHLILVGLYQLGHMRIPAHAAVAETVNATKDLKKTQ-LRGLI 114 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179 N+ILR R++ + + AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAILRNYQRQQEQLDAQSVSHDAGKYGHPGWLLKMLKASYPEQLEAIVTANNTKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + LN V + TG P + LPGFA+G VQD +A + Sbjct: 175 VNRQHHTRDEYRALLNDVGIETGLHPEAADALRLLSPCDVSKLPGFADGWSSVQDGAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYA 290 V + +LD CAAPGGKTA ++ V A+D +RRL ++ NL RL L A Sbjct: 235 AVDFLQPQADELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVHENLARLKLDA 294 Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D+ + FD +L+DAPCS+TG IRRHPD+ W R DI A Q ++ Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQAEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ E V+ L + ++ A + Sbjct: 355 DAMWLQLKSGGTLVYATCSITPQENSEQVKAFLART--------ADATLINRGQEADSDV 406 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P S MDGF+ L++ Sbjct: 407 EQPGRQILPG--------ESDMDGFYYAVLQK 430 >gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 5_1_63FAA] gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 5_1_63FAA] Length = 447 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 113/460 (24%), Positives = 195/460 (42%), Gaps = 39/460 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L V +K + F +RD+ +V TL ID Sbjct: 3 NPRECALDVLIKVDKKEELSHIAISNVLEKYQFS--EKRDRAFFTRLVEGTLERQITIDY 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V D + + + K ++ LLR+ + QILY+D V D A + AV+ AK+ + + V Sbjct: 61 VADQFSKTKIRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKK-RGFSRLSGFV 119 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N +LR +SR+K E+ ++ IPEW + + Y E V I + + Sbjct: 120 NGVLRNISRKKDEIQYPSREKNLETYLSVAYSIPEWIIKFFQKTYDNETVEKIIASYLEE 179 Query: 176 LYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQ 226 L E +L A + L E I L F EG +VQ Sbjct: 180 RKTTLCCLISKGGKEAVRKELEAEGVTVEDGSLIENAVQISDYDFLYRLKAFREGSCYVQ 239 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNL 283 D S+ + +L V+DLC+APGGK+ + +V + D+++ + + + N+ Sbjct: 240 DESSMLCAKLASVQKEQFVMDLCSAPGGKSLYVADQLKGSGRVLSRDLTEYKTDLIEDNI 299 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 DR+ + DA + D V+ D PCS G + + D+ + + + Sbjct: 300 DRVGFTNMESEVFDARVLDEEHIEAADIVIADVPCSGLGIMGKKNDIKYHISEEGMKDLV 359 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L + +VK GG +++S C+++ ++EE + ++ E V + K Sbjct: 360 KLQREILANAVQYVKHGGTLIYSTCTINPAENEENFRWIIDHF--DFEAVDITKELPK-- 415 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + + EG+I++ P + DGFF LRR Sbjct: 416 DLKIETAQEGFIQLLPGI--------HPCDGFFIGKLRRK 447 >gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium difficile QCD-23m63] gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP08] gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP07] gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP08] gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium difficile NAP07] Length = 441 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 98/460 (21%), Positives = 206/460 (44%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR V +L + + ++ + + +S D+ L ++ + +D Sbjct: 1 MDAREVGFKVLCDIEKNNNYSNIAINKHFKN---LEISDIDRGLATELIYGVIENKYYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + ++ LR+ QIL+LD ++DYA V+ V+ +K+ ++ + Sbjct: 58 YIINKLSKIKVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY--DKKSSGF 115 Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+ILR R K ++ ++ W + + +G+E + +A Sbjct: 116 INAILRNEIRAKETIMDITEEDSVKYLSIKYSYNSWIIKNWIDKFGQEFAEDLLEANSEK 175 Query: 176 LYIDL---TVKFDIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQ 226 I + +K E KL+ + + E ++I F G++ +Q Sbjct: 176 PSIYIRTNMLKISREELIEKLSEMGIVCLKVPMVEEAIKVEKMKNIEKNELFKAGLFTIQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ I ++ + VLD+C+APGGK+ L+ + +V A D+ + +L+ ++ + Sbjct: 236 DISSMIVGKVINPKEDSFVLDVCSAPGGKSTHLATLMNNTGQVVARDIFEHKLKLIKSTV 295 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L + DA + FD VL D PCS G IRR P++ + + +++ Sbjct: 296 NRLGLKNVCVERFDASEIDENSISKFDYVLADVPCSGLGIIRRKPEIKY-KKEEELKDIT 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+K+L +VK GG +V+S C++ ++ +V + + ++ Sbjct: 355 SIQKKILENASRYVKVGGTLVYSTCTIQDDENINIVASFVEENHNF------EFDSIDTV 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + +G+++I P++ G+DGFF L+R+ Sbjct: 409 NVDLDNQDKGYLKIYPNI--------HGIDGFFIAKLKRI 440 >gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. ATCC 3502] gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. ATCC 19397] gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. Hall] gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum NCTC 2916] gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B1 str. Okra] gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. ATCC 19397] gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A str. Hall] gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B1 str. Okra] gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum NCTC 2916] Length = 442 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A DV + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + VL+D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii SS-2004] gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii SS-2004] Length = 428 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 109/455 (23%), Positives = 211/455 (46%), Gaps = 43/455 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ + V+ + SL+ ++ + +S +D+ L++ + +R L Sbjct: 1 MKNTYNLRNIAAKAIHQVLEQGQSLSTVIPEL-----QQRVSDKDKALLQELCFGVIRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ L K+ L+ V + Q+ Y + +A + V A K + Sbjct: 56 PQLEWFIGQLMAKPLKGKQRIFHYLIMVGIYQLTYTRIPAHAALAETVNGAISLKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAGISII--PEWFKERLENFYGKERVLAIS-DACISPLY 177 L+N +LR+ R++ L++++ +S P+W + ++ Y ++ I + P++ Sbjct: 115 KGLINGVLRQFQRQQQTLVEQVNNVSCHLHPKWLLDHIQKAYPQDWQKIIDANNQKPPMW 174 Query: 178 IDLTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230 + + + L + P + +LPGF +G +QD SA Sbjct: 175 LRVNQRYHSANQYLALLQEANIDAELDENHPSAIRLLNPCPVNTLPGFDQGWVTIQDRSA 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 +L + S+LDLCAAPGGKT I +KV A+D+ ++R+++++ NL RL+L Sbjct: 235 QGCAELLTPCDGESILDLCAAPGGKTTHILEIAPKSKVLAVDIDEQRIKRVKENLQRLNL 294 Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 +A + D ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI + Q Sbjct: 295 HAV-VKTGDGRFPHEWATGEQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIDQLVTLQT 353 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L ++K G +V++ CS+ ++ + ++ L Sbjct: 354 EILDAIWPYLKKHGTLVYATCSILPHENSQQIKAFLGRHTDAAL-------------SDT 400 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + I+I P ++G DGFF L + Sbjct: 401 GTLDKPGIQIIP--------ETTGGDGFFYARLTK 427 >gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes HCC23] gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria monocytogenes HCC23] gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria monocytogenes L99] Length = 444 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 121/463 (26%), Positives = 208/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG +++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIKKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia kristensenii ATCC 33638] Length = 429 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 215/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPRLHKN-----ISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIKQLMARPMTGKQRIFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKQAYPDQWQQIVDANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ +LPGF G VQDAS Sbjct: 175 WLRVSRLHNSRSKYLELLKQANIDALPHDFYPDAVRLITPCAVSTLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKAHVLAIDIDEQRLSRVKENLQRLK 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A D+ D ++C + FD +L+DAPCS+TG IRRHPD+ W R DI A Q Sbjct: 295 LHA-DVRVGDGRIPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIADLAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ ELV + Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRH-SEAELVETGTTSAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGF+ L + Sbjct: 409 ----------------RQNLPHPEDGDGFYYAKLIK 428 >gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195] gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195] gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678] Length = 428 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LFQSRSEYLATLAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LTPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A2 str. Kyoto] gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A2 str. Kyoto] Length = 442 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGKYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A DV + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + VL+D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36] gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36] Length = 431 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 130/455 (28%), Positives = 209/455 (45%), Gaps = 41/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K SLT L + A +LL +D+ L++ I LR+LPR++ Sbjct: 1 MKTRASAAKVLYQVVDKGQSLTTALPI-----AQQLLPAKDRALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + ++ L K+ + L+ V + Q+ Y+ + +A V V A + ++ + LV Sbjct: 56 FMSRQLMSKPLIGKQRPVHFLILVGLYQLKYMRIPAHAAVAETVN-AIKVLKSPKLSGLV 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N+ILR R++ +L A P W +R++ Y K+ + P++I Sbjct: 115 NAILRNYQRQQDDLETLADGNDACKFGHPGWLIKRIKAAYPKQWQDVLMANNERPPMWIR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + L A + + + P + L GFAEG VQD +A Sbjct: 175 VNQQHHNQADYQALLAADEIVAEIVDSADSALRLAKPTDVYKLAGFAEGHSSVQDGAAQF 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLY 289 Q VLD CAAPGGKTA ++ + A+D RL +++ NL R+ L Sbjct: 235 AAQFLDAQPGELVLDACAAPGGKTAHILERQPALKHLVAVDFDATRLSRVQENLTRMQLD 294 Query: 290 AEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 AE I D+ FD +L+DAPCS+TG IRRHPD+ W R DI Q ++ Sbjct: 295 AELIHGDASKPEDWWQGDKFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAPLVQLQAEI 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG ++++ CS+ ++ E + + +P V LVPLN A + Sbjct: 355 LDAMWLQLKPGGTLLYATCSILPAENSEQISSFVARTPDAV-LVPLN---------ADSN 404 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P+ + GMDGFF L++ Sbjct: 405 DQAFSWQILPN--------TQGMDGFFYAKLQKKA 431 >gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 9_1_43BFAA] Length = 452 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 97/467 (20%), Positives = 189/467 (40%), Gaps = 39/467 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +L + R + + ++ L ++++ + +V TL + Sbjct: 1 MAKMTDDRELILGVLLEITRDGVYSHIAIRNVLE--KYQYLDKKERAFITRVVEGTLERM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + + K ++ +LR +V Q+ Y+D V D AV + AV+ A++ K R Sbjct: 59 IEIDYIINQFSNVKVNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAVKLAEK-KGFRS 117 Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR ++R ++ ++ IPEW + + YG E V + Sbjct: 118 LKGFVNGVLRTIARNMDQIRYPEKEKNPVSWLSIHYSIPEWMVKLWLSEYGAETVEKMLK 177 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221 + + + +L + + + L F +G Sbjct: 178 GFLEEHPTVIRCNLRKHSEKELTERLRKEGVKVEAHPYLSYAKKISGYDHLGGLESFRDG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEK 278 + VQD S+ + ++ V+D+CAAPGGK+ + V A D+++ ++ Sbjct: 238 AFQVQDISSMLVAEIAAPQRGDQVIDVCAAPGGKSMHIADLLDGSGMVAARDLTEYKVGL 297 Query: 279 LRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N+ R + D FD +++ D V+ D PCS G + + D+ + + Sbjct: 298 IEENICRTGFQNIRAEQKDATVFDKDSERIADIVIADLPCSGLGVLAKKTDLKYKMTKEG 357 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 A QR++L ++VK GG +V+S C+++ ++ E V+ L +SP Sbjct: 358 TESLAKLQREILGVVKNYVKEGGALVYSTCTINPAENLENVRWFLDNSPEF----KAEDI 413 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 EG +++ P + DGFF RR + Sbjct: 414 TPFLCGELQKDVKEGCLQLLPGV--------HDSDGFFIAKFRRKRK 452 >gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 456 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 104/458 (22%), Positives = 197/458 (43%), Gaps = 34/458 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR++++ ++ VM + L +S LS D+ L+ IVN T+R + +D Sbjct: 11 KARIMAAEIVYEVMERGAFANLALAKALRNS---DLSAADRHLLTEIVNGTVRMIKHLDW 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 VL+ L S + ++ L +LR ++ Q+++L V DYA+V+ AVE +++ + A + Sbjct: 68 VLELFLHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQKMGAK-MAGVS 126 Query: 125 NSILRRVSR------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N++LR + R + + + P+W + + G + + S + Sbjct: 127 NAVLRNIIRKLDKIKYPDDPVSFYSIYYSHPDWLVKLWLDTLGTQACETLLAYNNSRSRV 186 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDA 228 L E KL + L P+ I F +G +++Q+ Sbjct: 187 VLRCNPLKCSREELIDKLEEEGVKAQLSPLTPWGIVVEDNPQPIAETASFKKGYFYIQNE 246 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 ++ + + VLDLC GGKT + + +V A++ ++LE LR N R Sbjct: 247 ASMLAAAILNPPAGERVLDLCCGVGGKTTHLAEYMNNQGEVLAVEFYAQKLELLRQNCQR 306 Query: 286 LHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L L +E D + +L+DAPCS G + R D W ++ ++I + Q Sbjct: 307 LGLGIVKDLEKDIRTLNSKEVKARYLLLDAPCSGWGVLNRRADARWRKNQEEINELTQLQ 366 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + + + V+ G ++++ C++++ ++EE+++ L + V L+ + +D Sbjct: 367 AQFISHAATMVEKQGYLLYATCTINQAENEEIIEGFLEENQHFVLEGFLSKLSFFPLDKP 426 Query: 405 MALSPE-GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S G + + P G DG F LRR Sbjct: 427 DKASANRGMLTLMPGKY--------GTDGMFYALLRRK 456 >gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155] gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155] Length = 428 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRAEYLAALAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96] gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96] Length = 429 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 218/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D L++ + LR L Sbjct: 1 MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ + K+ +L L+ V + Q+++ + +A + VE A K + Sbjct: 56 PQLEWIISKLMSRPMTGKQRALHFLIMVGLYQLMFTRIPPHAALAETVEAAVALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N + +R E ++ + + P+W ERL+ + + + + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPVQWQQIVAANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + +TW L ELP ++ LPGF +G VQDAS Sbjct: 175 WLRVNRQHHSRDTWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL+ Sbjct: 235 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLN 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+AE + D +C +LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHAE-VKLGDGRTPAAWCGDRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L ++K GG ++++ CS+ +++ + + L+ V + + Sbjct: 354 QQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANAVLVETGDLTQP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I++ P + G DGF+ L + Sbjct: 408 -------GIQVFPQV--------DGGDGFYYAKLVKK 429 >gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus VM223] Length = 426 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 205/453 (45%), Gaps = 46/453 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGQSLSNALPT-----AQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + + L L + P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL++++ NL RL L Sbjct: 235 ALTYLTPKAGELILDCCAAPGGKTAHILEHTPDSQVVAIDCDETRLKRVQENLQRLKL-N 293 Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I D D+ + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++ Sbjct: 294 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 353 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 354 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 403 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ----GRQILPGEEA--------MDGFYYAVLSK 424 >gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185] gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185] Length = 428 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRAEYLAALAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILEHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLETLSQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 426 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 211/452 (46%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L +A + + +RD L++ I LR+LPR++ Sbjct: 1 MNVRATAAKVIYQVVDQGQSLSAALP-----AAQQDIRERDHALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ Y+ + +A V V K K+ + L+ Sbjct: 56 SITQALMDKPLKGKQRVFHHLILVGLYQLGYMRIPAHAAVAETVNATKTLKKPQ-LRGLI 114 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179 N+ILR R++ E + AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAILRNYQRQQEELDAKAISHDAGKLGHPSWLLKLLKESYPEQFEAICEANNTKAPMWLR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + + + L+A + T P + LPGF++G VQDA+A + Sbjct: 175 VNRQHNTRDAYRALLDAEGIATELHPQAADALRLLSPCDVTKLPGFSDGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD CAAPGGKTA ++ KV A+D + RL+++ NL RL+L A Sbjct: 235 AVDYLQPQAGELILDCCAAPGGKTAHIMEHVPSTKVVAIDCDENRLKRVHENLARLNLDA 294 Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ Sbjct: 295 TVLCADARYPEQWWKGDKFDRILLDAPCSATGVIRRHPDIKWLRRGEDIAALATLQAEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ + V+ L + + LV + A Sbjct: 355 DAMWLQLKPGGTLVYATCSITPQENCDQVKAFLART-LDATLVGSDPAKP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLTK 424 >gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341] Length = 426 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 202/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQERLDTQATSHDAGRYGHPGWLLKLLKESYPQQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFA+G VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQADIACTPHSQAEDALCLETPCDVHQLPGFADGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA G++V A+D + RL++++ NL RL L A Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILEHTPGSQVVAIDCDETRLKRVQENLQRLQLNA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDITALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P ++ + Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENCLQVKAFLERTPEA--------------NLVGSDP 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P MDGF+ L + Sbjct: 401 AQPGRQILPGEEA--------MDGFYYAVLSK 424 >gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32] gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32] Length = 429 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 122/448 (27%), Positives = 200/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLEKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRTEYLAALAELDIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQANELILDACAAPGGKSCHLLEVEPNIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM 10507] gi|225038286|gb|EEG48532.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM 10507] Length = 446 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 196/460 (42%), Gaps = 38/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + +L V + ++ F L ++++ + + TL + ID Sbjct: 1 MNTRELILGILLAVNEEGEPSHRVIREVLTKHQF--LPKQERAFITRVCEGTLEYQITID 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L+ + K ++++LR SV Q+ Y+D V D AV + AV+ A++ K + Sbjct: 59 YILNHFSKVKTDKMKPVIREILRSSVYQLKYMDSVPDSAVCNEAVKLAQK-KGFYNLKPF 117 Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 VN +LR ++RE E+ ++ +P + ++ YG+E + ++ Sbjct: 118 VNGVLRTIAREMEEVPYPERSDLENHLSVKYSMPPFLVQKWLREYGEEITEKMLADFLTE 177 Query: 176 LYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + + + L ++ I+++ F EG VQ Sbjct: 178 RPTTVRCRQYLTNQEETLESIREQGIQVSPAPYLDYAFYLSGYNHILTIQAFLEGKIQVQ 237 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + ++ +LDLCAAPGGK+ + V A D+++ ++ ++ N+ Sbjct: 238 DVSSMLVAEVAAPKKGDQILDLCAAPGGKSLHVADKMAGFGMVEARDLTEYKVGLIQENI 297 Query: 284 DRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R MDA D + D VL D PCS G I + PD+ + + Sbjct: 298 VRAGTINVQTRCMDATVLDIDSEDSADIVLADVPCSGYGVIGKKPDIKYKVTPSKQEEIV 357 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QRK+L + +VK GG +V+S C++ K++++E V L + P E V L+S + Sbjct: 358 ILQRKILDRAARYVKRGGTLVYSTCTIAKEENQENVSWFLENYP--FEAVELDSCLPQ-- 413 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + G++++ P + DGFF +R Sbjct: 414 ELCCETTKLGYLQLLPGV--------HKTDGFFIAKFKRK 445 >gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175] Length = 444 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 122/463 (26%), Positives = 207/463 (44%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVRAIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +Q+IA + +PEW +R + YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYGIEKLREIGLAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWW 224 + + + V E +LN + E S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V+ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLLAFLEKHP-EFTLEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +I++ P + G DGFF +LR++ Sbjct: 408 VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 442 >gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus MB-451] Length = 426 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 206/453 (45%), Gaps = 46/453 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQSLMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + + L L + P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL++++ NL RL L Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKL-N 293 Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I D D+ + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++ Sbjct: 294 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 353 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 354 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 403 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ----GRQILPGEEA--------MDGFYYAVLSK 424 >gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146] gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative [Edwardsiella ictaluri 93-146] Length = 430 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 131/457 (28%), Positives = 223/457 (48%), Gaps = 45/457 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ N R +++ LS V+ + SL+ +L SA + LS++D+ L++ + TLR Sbjct: 1 MKTTSYNLRAIAARTLSAVLDQGQSLSSVLP-----SAAQSLSEKDRALLQELCFGTLRV 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 LP+++ +L ++ L K+ +L LL V + Q++Y + +A + V+ A K + Sbjct: 56 LPQLEWILQQLMAKVLTGKQRTLHYLLMVGLYQLVYTRIPPHAALAETVDGATALKRPQ- 114 Query: 120 FAKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISP 175 L+N +LR+ R++ Q+ A + P W +RL++ Y ++ + ++ P Sbjct: 115 LKGLINGVLRQFQRQQEALLLQSQQHASHWLHPSWLLKRLQHAYPEQWPAIVEANNQRPP 174 Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 +++ + + + L + + + + LPGF G VQDA Sbjct: 175 MWLRVNRRHHTRDAYLTLLQQAGIEAVAHDYFPDAIRLLVAQPVTRLPGFEHGWVTVQDA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA V L ++ +LDLC APGGKT ++ A V A+DV + RL+++R NL RL Sbjct: 235 SAQHSVDLLDPQDSEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDETRLKRVRENLQRL 294 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +AE I D ++ + FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 295 QQHAE-IRCGDGRTPDEWASGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDITELAAL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+++ F+K GG++V++ CS+ Q+++E + L P Sbjct: 354 QREIIDAVWPFLKSGGVMVYATCSILPQENQEQILTFLSRHPDA---------------- 397 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS G I+ P + + DGFF L + Sbjct: 398 --RLSDTGDIQ-RPGL--QFLPRPDAGDGFFYTKLIK 429 >gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202] gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202] gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda FL6-60] Length = 430 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 128/456 (28%), Positives = 214/456 (46%), Gaps = 43/456 (9%) Query: 1 MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ N R +++ LS V+ + SL+ +L SA + LS +D+ L++ + TLR Sbjct: 1 MKNTPYNLRAIAARTLSAVLDQGQSLSSVLP-----SAAQPLSDKDRALLQELCFGTLRV 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-- 117 LP+++ ++ ++ L K+ L LL V + Q++Y + +A + V+ A K Sbjct: 56 LPQLEWIVQQLMAKVLTGKQRPLHYLLLVGLYQLIYTRIPPHAALAETVDGAVALKRPQL 115 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 + V +R + + Q+ A + P W +RL+ Y ++ + P+ Sbjct: 116 KGLINGVLRQFQRQQQPLLLQSQQHASHWLHPSWLLKRLQQAYPEQWQSIADANNQRPPM 175 Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + + P+ + LPGF +G VQDAS Sbjct: 176 WLRVNRCHHTRDAYLALLLQAGIDAVPHETFPDALRLQDPQPVSRLPGFEQGWVTVQDAS 235 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLC APGGKT ++ A V A+DV + RL+++R NL RL Sbjct: 236 AQHSVDLLDPQDGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDESRLKRVRENLQRLQ 295 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 +AE I D ++ + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 296 QHAE-IRCGDGRTPDEWARGRQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+++ F+K GG++V++ CS+ Q+++E + L P Sbjct: 355 REIIDAVWPFLKSGGVMVYATCSILPQENQEQILAFLSRHPDA----------------- 397 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS G I+ P + + DGFF L + Sbjct: 398 -RLSDTGDIQ-RPGL--QFLPRPDAGDGFFYAKLIK 429 >gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri FSL N1-067] Length = 446 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 119/467 (25%), Positives = 206/467 (44%), Gaps = 44/467 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L+ + + L++ + L+ D+ L+ +V T + Sbjct: 1 MKKQKTVREIALELIIKIENNQSYSHLLINDALKK---QKLNPLDKGLLTELVYGTTQRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 + L L ++ LLR+SV Q+ +LD V ++A+++ A + AK D ++ Sbjct: 58 ITLXYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAGDIAK-DLGHQG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR V R+ + +++IA + +P W +R YG E++ I A Sbjct: 114 VTKFVNGVLRNVIRKGVPSIDLIQDPVEKIAVETSLPVWLAKRWAKQYGNEQLREIGMAF 173 Query: 173 ISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + + V E +LN L S+ + +G Sbjct: 174 LVAPHQSIRVNQTEIRTEQLIKELNDQGITVTRNEFIDEALIVEKGSVAETKAYKDGKCS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + +NL+VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLATYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALDIHEKKTKLIDH 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L +DA + FD +LVDAPCS G +RR PD+ + + DI Sbjct: 294 AAKRLQLLNIRTAHLDARTASTMFAPETFDRILVDAPCSGFGVLRRKPDIKYAKTEKDIH 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 K A Q +L VK GI+V+S C++DK+++E V++ L P L P+ Sbjct: 354 KLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-EFALEPV----- 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + ++++ P + G DGFF +LR++ P+ Sbjct: 408 ALPEKLAHIKKDDFVQLLPTDI--------GSDGFFVSSLRKVS-PE 445 >gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 429 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 117/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ LPGF G VQDAS Sbjct: 175 WLRVNRLHHSRIEYLELLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQDGEQILDLCAAPGGKTTHILEAAPKVHVLAVDIDEQRLSRVKENLQRLR 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A D+ D ++C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHA-DVRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEA----------------- 396 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L G + + DGF+ L + Sbjct: 397 -DLVETGTVSAL---GRQNLPHPEDGDGFYYAKLIK 428 >gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10] gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10] Length = 457 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 116/457 (25%), Positives = 202/457 (44%), Gaps = 35/457 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L + + + LL+ + + D L+ IV TL+ R+D Sbjct: 9 NVRDAALDVLIKISKDQAYSHLLLNETVMKKKIKEV---DVALLTEIVYGTLQHQRRLDY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 + L + + + LLR+SV Q+ +LD V D+A+++ AV A + + ++ A +V Sbjct: 66 YVSAFSKKELNKLENWVLILLRLSVYQMHFLDRVPDHAILNEAVRIASK-RGHKGIAGMV 124 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR V RE + +R+A + P+W +R + YG E I+ +S Sbjct: 125 NGILRSVQREGVPDLEEIEDPKERLAIETSHPDWLIQRWISHYGFETAHRIAHGNLSYPV 184 Query: 178 IDLTVKFD---IETWAHKLNAVM-----LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 V E H+ P ++ I F EG +QD Sbjct: 185 SSARVNRMKVTREELMHEWTEEGLQITASPYLEEAVRVDKGVISRTAAFREGRCSIQDEG 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + L + VLD CAAPGGKT+ + ++ A+D+ K +++ + +RL Sbjct: 245 SMMVTGLLDPKPGMRVLDSCAAPGGKTSHIAERMNDEGELYAMDIHKHKIKLIDAQAERL 304 Query: 287 HLYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L ++ DA + ++ FD +LVDAPCS G I+R PD+ WT+ DI + Sbjct: 305 GLSVVHGLKGDARLAGEQLEEESFDCILVDAPCSGLGVIQRKPDLKWTKSERDIERLTVI 364 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L Q +KPGG +V+S C++D +++E V + + + + + Sbjct: 365 QGEILKQVWPLLKPGGRLVYSTCTIDYEENEGQVTHFVNETADADFEADFLNRLPEPVQT 424 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G I++ P G DGFF ++ + Sbjct: 425 SSFANQSG-IQLIPGQY--------GTDGFFMTSIVK 452 >gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC BAA-613] gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC BAA-613] Length = 455 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 198/460 (43%), Gaps = 35/460 (7%) Query: 1 MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M G+ R + +L+ V+ + + +L+ ++ L + D+ + V T Sbjct: 1 MAKTLDRGLENREIVLDILTEVLEQGAFVHLVLNQALQ--KYQYLGKADRSFITRAVEGT 58 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L +L +ID V++ + + + K ++ LLR+SV QILY+D V D AV + AV+ A + + Sbjct: 59 LEYLIQIDEVINRYSKTKINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVK-R 117 Query: 116 ENRHFAKLVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR +SREK + IPEW E +GKE+ I+ + + Sbjct: 118 HFSGLKGFVNGVLRTISREKENLTFDTPSLRYSIPEWMYAMWEKEFGKEKAEKIAASFLE 177 Query: 175 PLYIDLTVKFDIETWAHKLNA---------VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + L + + + + + + L F +G V Sbjct: 178 DKPTWVRCNLHRADRESILASLKAQGTSVRELPFMESMIAIDGYDYLEGLDAFRKGWIQV 237 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282 QD +++ ++ + ++D+CAAPGGK+ L V A D++ ++ + N Sbjct: 238 QDVTSAFVGEIASPEKDSYIIDVCAAPGGKSLHLADKLEGTGMVEARDLTYQKTALIEEN 297 Query: 283 LDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + R + + D D D V+ D PCS G I R PD+ + + + + Sbjct: 298 MARCGVTNMKTLVWDALETDLSAMAKADIVIADLPCSGLGIIGRKPDIKYNMTPEKLEEL 357 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QR++L +VKPGG++ +S C++D+ ++++ + P LVP++ Sbjct: 358 AGLQREILSVVWQYVKPGGLLCYSTCTIDRLENQDNAAWLRDRFP----LVPVDLTDRFG 413 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +GWI+ P + DGFF RR Sbjct: 414 GLPQEPSLKDGWIQFLPGV--------HPYDGFFISVFRR 445 >gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-3-3Ab] gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. JA-3-3Ab] Length = 448 Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 121/477 (25%), Positives = 186/477 (38%), Gaps = 72/477 (15%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ L + R +L+ S L D LV +V R +D Sbjct: 1 MNARQLALLALQKIERHNAYADVVLEHLLAHSR---LIPADCHLVSELVYGITRRRRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 A++D ++ L+ +L + Q+ +LD + A + +VE A++ + Sbjct: 58 ALIDCFARRPAHQQPLDLRLILYLGFYQLAFLDHIPPRAAIHTSVELARQVGLG-SLTGV 116 Query: 124 VNSILRRVSRE-----------------KIELLQRIAGISIIPEWFKERLENFYGKERVL 166 VN ILR R+ + +Q + P+W G Sbjct: 117 VNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPDWLVRLWWERLGPAETE 176 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLP 216 + P ++DL V + A + G +RL + I +LP Sbjct: 177 QLCAWFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALP 236 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 GFA+G W VQDASA V V+D CAAPGGKT + + ++ ALD Sbjct: 237 GFAQGWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHP 296 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMD----------AFDYCPKKLFDAVLVDAPCSSTGTIR 323 RL +L N+ RL L + + +D P + D VL+DAPCS GT+ Sbjct: 297 HRLRRLEENVQRLGLSSIRPLAIDLLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLH 356 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 RH D W + I + A Q +LL ++KPGG++V++ C+L ++E V+Q L Sbjct: 357 RHADARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCTLHPAENEAVIQSFLNR 416 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + I P ++ DGFF LRR Sbjct: 417 HPHWAAEGDP-------------------LLIWPHRQDR--------DGFFIQRLRR 446 >gi|254476801|ref|ZP_05090187.1| Fmu [Ruegeria sp. R11] gi|214031044|gb|EEB71879.1| Fmu [Ruegeria sp. R11] Length = 420 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 150/440 (34%), Positives = 219/440 (49%), Gaps = 22/440 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +G +AR + +LL V+ + LL Y A L+ D+ + + TLR L Sbjct: 1 MSNGTHARRRAIYLLDQVLGEGR----LLSECYAAGALDKLAPEDRARAQRLAADTLRNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D VL L S P + LR+ ++ A + VV+ V K + Sbjct: 57 ERADRVLQKHLKKSTPLM---VHNALRIGTVELCQGG-AAHGVVNEMVNIVAAHKRHGKL 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR+V+ + ++ + +P+W + L +G +L I A + +DL Sbjct: 113 KGLVNAVLRKVADQGPTEWAKL-RVPRLPKWLRSPLSQAWGAPAMLEIEAAHAAGAPLDL 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T K ++ L+AV LPTG RL + + +LPGFAEG WWVQDA+A++P QL Sbjct: 172 TAKPGVD--LSALDAVKLPTGSYRLHGSVQ-VSNLPGFAEGNWWVQDAAAALPAQLLAAK 228 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCAAPGGKT Q+ SGA VTA+D S+ R+ +LR NL+R L A ++ Sbjct: 229 PGEKVLDLCAAPGGKTMQMAASGADVTAVDQSEGRMARLRENLERTGLSATVVV---GDA 285 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +DAVL+DAPCS+TGTIRRHPD+ +D + Q ++L S VKPGG Sbjct: 286 LEETGQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGELIELQAQMLAHAWSLVKPGGR 345 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ CSL + E ++ L P L + ++ EG +R+ PD Sbjct: 346 LVYCTCSLLPDEGECQIEDALDMFPDMQVGEGLRNLAGID---PAWITDEGGLRLRPDYW 402 Query: 421 EKIDGVSSGMDGFFAVALRR 440 GMDGF+ LR+ Sbjct: 403 ----PDLGGMDGFYLAELRK 418 >gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573] gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573] Length = 438 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 206/453 (45%), Gaps = 46/453 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 13 MNVRAAAASALYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 67 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 68 SISQSLMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 126 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 127 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 186 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + + L L + P + LPGFAEG VQDA+A + Sbjct: 187 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 246 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL++++ NL RL L Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKL-N 305 Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I D D+ + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++ Sbjct: 306 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 365 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 366 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 415 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 416 ----GRQILPGEEA--------MDGFYYAVLSK 436 >gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223] gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223] Length = 428 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRTEYLAALAELEIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLERTADAKLDKLSQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A3 str. Loch Maree] gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum A3 str. Loch Maree] Length = 442 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 115/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A D+ + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDIHQNKLSLIEANAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + V++D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAYRVVMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4] gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4] Length = 429 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 122/448 (27%), Positives = 199/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 2 MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 58 KRVAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 116 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y I + P + Sbjct: 117 NGVLRNIQRQLTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIILQSHERPPMWLRNNR 176 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + + L A + L P+ + +LP F EG VQD +A L Sbjct: 177 LSQSRDEYLAALSELEIEASAGLSDDAILLAHPKDVTTLPRFHEGAASVQDGAAQWAATL 236 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + ++ A+D +RLE+++ NLDRL L AE I Sbjct: 237 LAPQANELILDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIH 296 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + + FD +L+DAPCS+TG IRRHPD+ W R DI + A QR++L Sbjct: 297 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCW 356 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + A + I Sbjct: 357 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGW--------- 407 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 408 -QITPG--------QHNMDGFYYARLLK 426 >gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp. Ejp617] Length = 441 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 117/457 (25%), Positives = 217/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D L++ + LR L Sbjct: 13 MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 67 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ + K+ +L L+ V + Q+++ + +A + VE A K + Sbjct: 68 PQLEWIISKLMSRPMTGKQRALHFLIMVGLYQLMFTRIPPHAALAETVEAAVALKRPQ-L 126 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N + +R E ++ + + P+W ERL+ + + + + ++ P+ Sbjct: 127 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPVQWQQIVAANNQRPPM 186 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L ELP ++ LPGF +G VQDAS Sbjct: 187 WLRVNRQHHSRDAWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQDAS 246 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL+ Sbjct: 247 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLN 306 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+AE + D +C +LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 307 LHAE-VKLGDGRTPAAWCGDRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 365 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L ++K GG ++++ CS+ +++ + + L+ V + + Sbjct: 366 QQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANAVLVETGDLTQP------ 419 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I++ P + G DGF+ L + Sbjct: 420 -------GIQVFPQV--------DGGDGFYYAKLVKK 441 >gi|154251779|ref|YP_001412603.1| sun protein [Parvibaculum lavamentivorans DS-1] gi|154155729|gb|ABS62946.1| sun protein [Parvibaculum lavamentivorans DS-1] Length = 440 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 164/441 (37%), Positives = 243/441 (55%), Gaps = 12/441 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G+ AR ++ +L+ V+++R + E R RD+ RAI LR L Sbjct: 7 TGLAARQGAASILTAVLKERRAFDDAFIAEAASGHLRNAEPRDRAFARAITATALRRLGT 66 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ID +L ++ LP++ + + +LR +A+IL+L VA +A V + VE A RD+ RHF Sbjct: 67 IDHILSLLIDKELPKRAGATENILRAGLAEILFLRVAAHAAVGMNVEAASRDENARHFKA 126 Query: 123 LVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR +RE +L + P+W + YG+E AI + +D++ Sbjct: 127 LVNAVLRRATREGDAILDNLDTERLDTPDWLWQSWSAAYGEETARAIVRMHYADPPLDIS 186 Query: 182 VKF--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 VK + T A L A +LP+G +RL++ I LPGF +G WWVQDA+A++P +L G Sbjct: 187 VKRAEERMTIAEALGATVLPSGTLRLEDA-GRIEDLPGFDDGAWWVQDAAAALPAKLLGD 245 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + VLDLCAAPGGKTA+L +GA VTALD S+ RL++L NL RL L A+ + DA Sbjct: 246 VTGREVLDLCAAPGGKTAELAAAGAHVTALDRSRPRLDRLEQNLSRLGLEAKTV-VADAT 304 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 Y P + +D +L+DAPCSSTGT RRHPDV + D K A Q +LL + + PGG Sbjct: 305 AYAPGRTWDLILLDAPCSSTGTARRHPDVPHLKSPADRDKLAALQARLLAHAATLLAPGG 364 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ V+ L + P P+ + ++ EG +R P Sbjct: 365 TLVYCTCSLEPEEGVRQVEAFLAAHP-AFRRQPVGVEDV--AGLGEIVTGEGDLRTLPCH 421 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L + G+DGF+A L R Sbjct: 422 LAAL----GGLDGFYAARLTR 438 >gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] Length = 447 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 203/457 (44%), Gaps = 35/457 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + ++L + + +L SA + D+ L +VN LR+ ++D + Sbjct: 4 ARETALNVLQALETGKKRSDQILHRTLEQSALNRI---DRALATGLVNGVLRYRLQLDFI 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L + L+ +LR+ + QIL+LD V D+A V+ V+ AK+ K +R +KLVN Sbjct: 61 ISRYYHHKLEKAAPVLKNILRLGLYQILFLDKVPDWAAVNECVKLAKKYKGDR-MSKLVN 119 Query: 126 SILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +LR+++ + I L + + A P+W ER YG ++ A+ Sbjct: 120 GVLRKITPQSIALDEWLKEREPSEQLAIKHSHPKWLVERWIADYGLKKTEALLTYNNRFP 179 Query: 177 YIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + ++T +L A G L E P ++G VQ+ + Sbjct: 180 LFGFRIN-RLKTSEEQLFSDPLFSSAAYEACGIENLFISKEFSTFEPAVSDGRLTVQNPT 238 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ L + +VLDLCAAPGGK+ + + + VT+LD+ +++L K+ + + L Sbjct: 239 QALACLLLNPVPGSAVLDLCAAPGGKSTFMAELMGNNGSVTSLDLYEQKLLKITTHAEAL 298 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + DA + P+ DA+L+DAPCS +G + R ++ W + I + Q + Sbjct: 299 GITIIRTVAADARSFKPENRPDAILLDAPCSGSGVVGRRTELRWKLTPETIQELITLQME 358 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ G++V++ CS++ +++ ++ L P + P + Sbjct: 359 LLDHAAELLEENGVLVYATCSIEPEENALQIEAFLERHP-DFSVDPDRGKVPEPFLPKSG 417 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +G I P G DG FA LR+ + Sbjct: 418 F--KGAILTLPGEYP-------GFDGGFAQRLRKTGK 445 >gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis ATCC 29906] Length = 422 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 210/457 (45%), Gaps = 51/457 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ ++ V+ + +SL+ ++ + +S +D+ L++ + TLR L Sbjct: 1 MKTSYNLRSIAAKAIAQVLDQGLSLSSVIPEL-----QKNISDKDKALLQELCFGTLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ L K+ L L+ V + Q+LY V +A + V A K+ + Sbjct: 56 PQLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLYTRVPAHAALAETVNGAIALKKPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPL 176 L+N + +R +E Q + P W R++N Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQDVLMERFQNNDSRYLHPSWLLTRIKNAYPELWESIIEGNNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229 ++ + + E + L + P ++ LPGF+EG VQD S Sbjct: 175 WLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFSEGWITVQDRS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A +L NN +LDLCAAPGGKT I A V A+D+ ++RL +++ NL+RL Sbjct: 235 AQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLK 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D +C FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q Sbjct: 295 LHAT-VKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L ++K GG +V++ CS+ +++ + + L S Sbjct: 354 KEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQDA----------------- 396 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P+ DGFF + + Sbjct: 397 ---QCDYQHQCLPEKYSG--------DGFFYALINKK 422 >gi|85060226|ref|YP_455928.1| 16S rRNA methyltransferase B [Sodalis glossinidius str. 'morsitans'] gi|123738922|sp|Q2NQQ2|RSMB_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|84780746|dbj|BAE75523.1| putative rRNA methylase [Sodalis glossinidius str. 'morsitans'] Length = 433 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 211/458 (46%), Gaps = 42/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R++++ ++ V+ + SL LL LS++D+ L++ + +R L Sbjct: 1 MKTHYNLRVIAARAVAQVLDQGQSLGALLP-----PLQAPLSEKDRALLQELCFGIMRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ +L ++ L K+ + LL V + Q+ Y + +A + VE A K + F Sbjct: 56 PQLEWLLRQLMAKPLTGKQRPVHYLLMVGLYQLTYTRIPPHAALAETVEGAVAMKRPQ-F 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ +R + P W ++R+ + + I + P+ Sbjct: 115 KGLINGVLRQFQRQQPALLADAERQDIRHLHPSWLQKRILAAWPAQYAQIIDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + + L + +P ++ LPGF G VQDAS Sbjct: 175 WLRVNRLHHSRDAYLALLAGTDIAAVAHSQLPDAIRLEMPCNVGRLPGFDRGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLH 287 A L N+ ++LDLCAAPGGKT ++ +V A+DV +R ++ NL RL Sbjct: 235 AQGCALLLAPQNSETILDLCAAPGGKTTHILEIAPAARVMAVDVDGQRAARIHDNLQRLG 294 Query: 288 LYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + AE +I + LFD +L+DAPCS+TG IRRHPD+ W R DI + A QR Sbjct: 295 MQAEVVIGDGRTPDAWRSGMLFDRILLDAPCSATGVIRRHPDIKWLRRDGDIAELAELQR 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +K GG ++++ CS+ +++ + L P + ++A Sbjct: 355 QILCAAWRVLKLGGTLLYATCSILPEENRGQIAAFLADHPDALLQETGDAAAP------- 407 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ P V + DGFF + + Q Sbjct: 408 ------GLQCLP--------VPTSGDGFFYAKMIKETQ 431 >gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3] gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3] Length = 436 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 114/458 (24%), Positives = 180/458 (39%), Gaps = 49/458 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ +L + + LLD E +A LS+RD L A+V + +D Sbjct: 3 QAREVALSVLLRMEQDDSYSNLLLDAELEKAA---LSRRDAALATALVYGVVARRITLDY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L+ + + + L+ +LR+ Q+ YLD + A V+ AV+ AK+ H + V Sbjct: 60 LLETASGRPVQKMQPVLRAILRLGAYQLCYLDKIPARAAVNEAVQLAKKRHLG-HASGFV 118 Query: 125 NSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N +LR + R++ L P YG ER I + + Sbjct: 119 NGVLRGLDRKRGALPFPSEEADVLRAWEVRYSCPRALIALWRQAYGPERTREILEQLNAV 178 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQ 226 + + V + +L + L + +LP F EG ++VQ Sbjct: 179 PPLAVRVNTLRTTPDALRAELAEAGIEAAPDASVPDALLLSHSADLRTLPAFTEGCFFVQ 238 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + +V DLCAAPGGK+ + V A D+ R+ + Sbjct: 239 DIASQMACAALDPQPGETVYDLCAAPGGKSFTLALHMRGQGMVRAFDLHAHRVRLIEEGA 298 Query: 284 DRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L DA P D VL D PCS G IRR P++ + ++ Sbjct: 299 GWLGLSGIVQASVRDATGGEPLPPADRVLCDVPCSGLGVIRRKPEIRY-KNPKIFDGLPD 357 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L G + +KPGG++V+S C+L+ ++E VV++ L E VP SA Sbjct: 358 LQYHILCDGAANLKPGGVLVYSTCALNPAENEAVVRRFLDGH-AGFEPVPFPSA------ 410 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + + G DGFF L R Sbjct: 411 --------------PAGNATLFPQADGTDGFFIAKLLR 434 >gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus obeum A2-162] Length = 450 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 96/465 (20%), Positives = 196/465 (42%), Gaps = 39/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M SG+N R + +L + + + S ++ L ++++ + + TL + Sbjct: 1 MTSGINTREMILEILLQINEEGEHSHIAIRNAL--SKYQFLPKQERAFITRVCEGTLEYR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + + K ++++LR ++ Q+ ++D V D AV + AV+ A++ K + Sbjct: 59 ILIDYIINSFSKIPVDKMKAPIREILRSAIYQMKFMDRVPDSAVCNEAVKLAQK-KGFYN 117 Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR +R+ EL ++ +PE R YG+E + Sbjct: 118 LKPFVNGVLRTAARQMNELEYPSREENLVRYLSVRYSMPEELVNRWLEDYGEEITEKMLA 177 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEG 221 + + + + + + +++ + I++L F +G Sbjct: 178 DFLREKPVMIRCRTYLNSVDKICDSLKSQGVTVEPAPYLPYAKRISGYNHILALDAFIQG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT---ALDVSKRRLEK 278 VQD S+ + ++ V+D+CAAPGGK+ + A D+S+ ++ Sbjct: 238 KILVQDVSSMLVAEIANPSRGDYVIDMCAAPGGKSLHMGDKMEGFGTVDARDISQYKVNL 297 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N+ R DA + + D VL D PCS G I + P++ + Sbjct: 298 IEENIQRTGSINVQAKVQDATLFDVESECKADIVLADVPCSGYGVIGKKPEIKYRSTAQK 357 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + QR +L + +VKP G+++FS C++ K+++EE + + + P +E + Sbjct: 358 EDELVILQRTILDKAAEYVKPRGVLIFSTCTIAKEENEENMMWFMNNHPFKLESIDDCIP 417 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + G++++ P + G DGFF RR Sbjct: 418 E----ELRSETTALGYLQLLPGV--------HGTDGFFIAKFRRK 450 >gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri K-227] Length = 454 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 211/456 (46%), Gaps = 46/456 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 N R +++H + V+ + SL+ +L + +S +D+ L++ + LR L + Sbjct: 28 KQRNLRSMAAHAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQ 82 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 83 LDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKG 141 Query: 123 LVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L+N +LR+ R + E + P W +RL+ Y E+ +I++A + Sbjct: 142 LINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPPMW 200 Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230 L + ++W L+ + P + +LPGF +G VQDASA Sbjct: 201 LRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 260 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL + Sbjct: 261 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM 320 Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 321 KAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 379 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +K GG +V++ CS+ +++ ++ L+ + ++ Sbjct: 380 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCE 425 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PE ++ + DGFF L + Sbjct: 426 TGTPE-------QPGKQNQPGAEEGDGFFYAKLIKK 454 >gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 430 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 126/454 (27%), Positives = 200/454 (44%), Gaps = 43/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ ++ V+ + SL+ +L +A ++ RD+ L++ + TLR+LPR+D Sbjct: 1 MKTRAQAALVIQQVLDQGQSLSAVLP-----AAQEKVAPRDRALLQELCYGTLRWLPRLD 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A + ++ L K L+ V + Q++Y + +A V V K K L+ Sbjct: 56 AAVGEMMDKPLKNKSRIFHYLILVGLYQLIYTRIPAHAAVAETVNAVKLLKGT-SLRGLI 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR R +L RI + PEW +RL Y + I +A + + Sbjct: 115 NGVLRNFQRSAEVILLRIDRVPSIRLGHPEWLTKRLRQAYP-DEWEFIMEANNQRPPMWI 173 Query: 181 TVKFDIETWAHKL---------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 ++ L L E P + LPGF G VQD +A Sbjct: 174 RNNSQRQSREQMLVRMAEAGINAMAGEEGEDCILLERPCDVTKLPGFEAGDCSVQDGAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 L VLD CAAPGGKTA L+ V A+D RL++++ NLDR+ L Sbjct: 234 QAAALLDPQPGEWVLDACAAPGGKTAHLLERQPALAGVVAVDADDNRLKRVQENLDRIGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + P+ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q + Sbjct: 294 TAKVIHGDASTPDLWWPEGQFDRILLDAPCSATGVIRRHPDIKWLRRDQDIRELAELQHR 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L S +K GG ++++ CS+ +++ + ++ L ++P LVPL++ Sbjct: 354 ILGALWSKLKSGGTLLYATCSVLPEENRDQIRAFLAATPDAT-LVPLHAQDTPECP---- 408 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P E MDGF+ L + Sbjct: 409 -----GRQFLPGEAE--------MDGFYYAKLIK 429 >gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603] gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603] Length = 438 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 207/453 (45%), Gaps = 46/453 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 13 MNVRAAAASVLYQVVDLGQSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 67 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 68 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 126 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 127 NAVLRNYQRDQERLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 186 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + + L L + P + LPGFAEG VQDA+A + Sbjct: 187 VNHQHHNRDEYQTLLEQADLASEPHSQAEDALCLASPCDVNQLPGFAEGWVSVQDAAAQL 246 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL++++ NL RL L Sbjct: 247 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKL-N 305 Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I D D+ + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++ Sbjct: 306 AQVICGDARYPQDWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREI 365 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 366 LDAMWQQLKPGGTLVYATCSITPQENSLQVKAFLERTPN-ASLVGSDPAQP--------- 415 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 416 ----GRQILPGEEA--------MDGFYYAVLSK 436 >gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 4_1_37FAA] gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae bacterium 4_1_37FAA] Length = 452 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 99/467 (21%), Positives = 194/467 (41%), Gaps = 39/467 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +L + R + + ++ L ++++ + +V TL + Sbjct: 1 MAKMTDDRELILGVLLEITRDGVYSHIAIRNVLE--KYQYLDKKERAFITRVVEGTLERM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + + K ++ +LR +V Q+ Y+D V D AV + AV+ A++ K R Sbjct: 59 IEIDYIINQFSNVKVNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAVKLAEK-KGFRS 117 Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR ++R ++ ++ IPEW + + YG E V + Sbjct: 118 LKGFVNGVLRTIARNMDQIRYPEKEKNPVSWLSIHYSIPEWMVKLWLSEYGAETVEKMLK 177 Query: 171 ACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEG 221 + + + +L + + + L F +G Sbjct: 178 GFLEEHPTVIRCNLRKQSEKELTERLRKEGVKVEAHPYLSYAKKISGYDHLGGLESFRDG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEK 278 + VQD S+ + ++ V+D+CAAPGGK+ + V A D+++ ++ Sbjct: 238 AFQVQDISSMLVAEIAAPQRGDQVIDVCAAPGGKSMHIADLLDGSGMVAARDLTEYKVGL 297 Query: 279 LRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N+ R + D FD +++ D V+ D PCS G + + D+ + + Sbjct: 298 IEENICRTGFQNIRAEQKDATVFDKDSERIADIVIADLPCSGLGVLAKKTDLKYKMTKEG 357 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 A QR++L ++VK GG +V+S C+++ ++ E V+ L +SP E + S Sbjct: 358 TESLAKLQREILEVVRNYVKEGGALVYSTCTINPAENLENVRWFLDNSP-EFEAEDITSF 416 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + EG +++ P + DGFF RR + Sbjct: 417 LCGELQKDV---KEGCLQLLPGV--------HDSDGFFIAKFRRKRK 452 >gi|302386503|ref|YP_003822325.1| sun protein [Clostridium saccharolyticum WM1] gi|302197131|gb|ADL04702.1| sun protein [Clostridium saccharolyticum WM1] Length = 446 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 102/456 (22%), Positives = 195/456 (42%), Gaps = 31/456 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M ++R + +L ++ + +L + ++ L + ++ + V T+ +L Sbjct: 2 MTKETDSREIVLEILLEILERGGYSHIILRQAL--NKYQYLEKSERAFITRTVEGTVEYL 59 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D ++D + + K ++ +LR+SV Q+LY+D V D AV + AV+ A + K Sbjct: 60 LQMDYIIDSFSNIKVRKMKPVIRTILRMSVYQLLYMDRVPDSAVCNEAVKLAVKRKFT-G 118 Query: 120 FAKLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN +LR +SR K ++ + +P W E YG+E + + ++ + Sbjct: 119 LKGFVNGVLRNISRNKEDITWPDDSIRYSMPSWIVSMWEKTYGRETAVIMMESFLKNKKT 178 Query: 179 DLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + F + L + + + E + + L F +G VQD S Sbjct: 179 TVRCNFAKASKEEILQSLKNQGAEVSESGISEAVLCIEKYDYLEGLDAFQKGYIQVQDLS 238 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRL 286 +S ++ V+D+C APGGK+ + V D++ ++ ++ N++R Sbjct: 239 SSFVGEIADPQKGDYVIDVCGAPGGKSIHIADKLDSTGMVEVRDLNLYKINLVQENINRC 298 Query: 287 HLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 DA P D V+ D PCS G I R PD+ + +D+ A Q Sbjct: 299 GFSNIRTRVQDALVSDPDSVGKADIVIADLPCSGLGIIGRKPDIKYRMTPEDLESLAALQ 358 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R++L ++VKPGG ++FS C+++K+++ E L P ++ + Sbjct: 359 REILSVVQAYVKPGGRLIFSTCTINKKENNENAMWFLNHFPFDC----MDLKGKLGEKLE 414 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A + +I+ P + DGFF A ++ Sbjct: 415 SAGLNQKFIQFLPGI--------HPCDGFFIAAFQK 442 >gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3] gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3] Length = 429 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 199/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 2 MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 58 KRVAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 116 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y I + P + Sbjct: 117 NGVLRNIQRQLTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIIQQSHERPPMWLRNNR 176 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + + L A + L P+ + +LP F EG VQD +A L Sbjct: 177 LSQSRDAYLAALSELEIEASAGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 236 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N VLD CAAPGGK+ + ++ A+D +RLE+++ NLDRL L AE I Sbjct: 237 LAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIH 296 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + + FD +L+DAPCS+TG IRRHPD+ W R DI + A QR++L Sbjct: 297 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCW 356 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + A + I Sbjct: 357 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGW--------- 407 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 408 -QITPG--------QHNMDGFYYARLLK 426 >gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320] gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis HI4320] Length = 422 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 209/457 (45%), Gaps = 51/457 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ ++ V+ + +SL+ ++ + +S +D+ L++ + TLR L Sbjct: 1 MKTSYNLRSIAAKAIAQVLDQGLSLSSVIPEL-----QKNISDKDKALLQELCFGTLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ L K+ L L+ V + Q+LY V +A + V A K+ + Sbjct: 56 PQLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLYTRVPAHAALAETVNGAIALKKPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPL 176 L+N + +R +E Q + P W R++N Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQDVLMERFQNNDSRYLHPSWLLTRIKNAYPELWESIIEGNNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229 ++ + + E + L + P ++ LPGF EG VQD S Sbjct: 175 WLRVNQIHHSREQYLALLEKEGISAFSDDHHPNAIRLETPCNVHLLPGFNEGWVTVQDRS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A +L NN +LDLCAAPGGKT I A V A+D+ ++RL +++ NL+RL Sbjct: 235 AQRCAELLAPQNNEQILDLCAAPGGKTTHILEIAPKAHVLAIDIDEQRLARVKENLNRLK 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A + D +C FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q Sbjct: 295 LHAT-VKSGDGRYPEQWCANMQFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L ++K GG +V++ CS+ +++ + + L S Sbjct: 354 KEILHAIWPYLKSGGTLVYATCSILPEENSQQIAAFLSSMQDA----------------- 396 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P+ DGFF + + Sbjct: 397 ---QCDYQHQCLPEQYSG--------DGFFYALINKK 422 >gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200] Length = 429 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLEKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRTEYLAALAELDIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYA--ED 292 N +LD CAAPGGK+ L+ + A+D +RLE+++ NLDRL L A Sbjct: 236 LAPQVNELILDACAAPGGKSCHLLELEPSINLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 SDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1] gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1] Length = 428 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 200/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFDVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 57 KRTAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y I + P + Sbjct: 116 NGVLRNIQRQLTPLSNESETLSYNTPGWLIKRLKTAYPGNWQEIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + + L+ A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFLEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLIAVDFDAKRLERVQQNLDRLSLKAEVIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + + FD +L+DAPCS+TG IRRHPD+ W R DI + A QR++L Sbjct: 296 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + A + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLVQQASSQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QHNMDGFYYARLLK 425 >gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3] gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3] Length = 434 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 9 MNVRAAAASALYQVVDLGHSLSDALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 64 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432 >gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Bf] gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum Bf] Length = 442 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFESAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A D+ + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDIHQNKLSLIESNAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + VL+D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIDIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S++K GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLKEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|149203489|ref|ZP_01880459.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. TM1035] gi|149143322|gb|EDM31361.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. TM1035] Length = 422 Score = 259 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 151/438 (34%), Positives = 232/438 (52%), Gaps = 19/438 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + AR ++HLL V+ + L+ A L+ D+ + + + TLR L Sbjct: 3 KPKLTARSAAAHLLDRVLGEGR----LMSDLIAGGALEPLAPADRARAQRLASETLRGLA 58 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R D +L L P +Q +LR++ ++ + VV+ AV+ + + + Sbjct: 59 RADRLLSRHLRKGPP---LPVQNVLRLATVELAQGG-ESHGVVNDAVDIIGQSPRHANLK 114 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR+V+ E + +P+W + L +GK V A+ A + +D+T Sbjct: 115 GLVNAVLRKVAEEAPRSWNDL-RQPGLPDWLRGPLVEAWGKGAVTAMERAHFAGAALDIT 173 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D + WA +L A +LPTG +R + P + +LPG+AEG WWVQDA+A++PVQ+ Sbjct: 174 VKSDPQGWADRLGATLLPTGSLR-RSDPGQVSALPGYAEGAWWVQDAAAALPVQVLAPQP 232 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +VLDLCAAPGGKT QL +GA+VTALD+S+RR+ ++ NL R L A +E Sbjct: 233 GETVLDLCAAPGGKTLQLAAAGAEVTALDLSERRMARVAENLARTGLEATCRVE--DARA 290 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +DA+L+DAPCS+TGTIRRHPD+ +D D Q ++L ++ +KPGG + Sbjct: 291 HQGGPYDAILLDAPCSATGTIRRHPDLPHAKDGSDFGALITLQAEMLDHALTLLKPGGRL 350 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VF CSL + E V++ L P L +A + ++ EG +R+ PD Sbjct: 351 VFCTCSLLPDEGECQVEEALARHPG---LTVDRAALAQPGIDPAWITEEGGLRLRPDYWA 407 Query: 422 KIDGVSSGMDGFFAVALR 439 + GMDGF+ LR Sbjct: 408 DL----GGMDGFYIACLR 421 >gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3] gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3] Length = 426 Score = 259 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + +S RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTISPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ + L KK L+ V + Q+ ++ + +A V VE K + + L+ Sbjct: 56 SIANELMENPLKGKKRVFHHLILVGIYQLSFMRIPSHAAVAETVEGTKTLRGP-SLSGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ EL + AG P W + L+ Y ++ I +P+++ Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYGHPSWILKMLQESYPEQWEQLIEANNSKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 + + + L + P + LPGF +G VQDA+A + Sbjct: 175 VNRQHHTRDEYVELLKNENIEYTLHSEAADAIKLASPCDVTLLPGFDKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V + +LD CAAPGGKTA + +V A+D +RL+++ NL+RL L A Sbjct: 235 SVDYLTPKDGELILDCCAAPGGKTAHILEHTNDTEVVAIDCDIKRLDRVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ FD +L+DAPCS+TG IRRHPD+ W R DI A Q +++ Sbjct: 295 DVICGDARYPEEWWMGDKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAELQSEIM 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ V+ L + ++ + + Sbjct: 355 DAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERT--------------ENATLVGSDI 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 ENPGRQILPG--------EEDMDGFYYAVLVKQA 426 >gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586] Length = 426 Score = 259 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 202/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGQSLSNALPT-----AQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + QI ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQISFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR RE+ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQREQERLDAQATSHDAGRYGHPSWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHSRDEYQALLEQAEIASEPHSQAEDALCLVNPCDVNQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL++++ NL RL L A Sbjct: 235 ALTYLAPKAGELILDCCAAPGGKTAHILERTPDSQVVAIDCDETRLKRVQENLQRLKLNA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D+ + FD +L+DAPCS+TG IRRHPD+ W R +DI A QR++L Sbjct: 295 QVICGDARYPQDWWQDEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDIPALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 355 DAMWQQLKPGGTLVYATCSITPQENCLQVKAFLERTP-EASLVGSDPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99] gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99] Length = 429 Score = 259 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 114/456 (25%), Positives = 212/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D L++ + LR L Sbjct: 1 MKKMTNLRCIAAQTIEKVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ V+ ++ + K+ ++ L+ V + Q+++ + +A + VE A K + Sbjct: 56 PQLEWVIGRLMSRPMTGKQRAVHFLIMVGLYQLMFTRIPAHAALAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N + +R E ++ + + P+W ERL+ + + + + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPAQWKQIVDANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L G E P ++ LPGF +G VQD S Sbjct: 175 WLRVNRQHHSRDAWLTLLEESGKQAFAHPQHGDALRLESPCAVGQLPGFDQGWITVQDVS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL Sbjct: 235 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVMAVDVDAQRLARVSENLQRLT 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D +C FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MQAE-VKQGDGRTPAAWCGDTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L +KPGG ++++ CS+ +++ + + L+ + + Sbjct: 354 QQILDAVWPHLKPGGTLLYATCSVLPEENHVQIGQFLQRHADATLIETGDLTQP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGF+ L + Sbjct: 408 -------GIQVFPQ--------ADGGDGFYYAKLVK 428 >gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7] gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7] Length = 429 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 199/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 2 MNLRALAAKAIFEVLEKGVSLSVALPEQQKHLA----SGKDKALLAELCYGVMRTLPQIE 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 58 KRVAECLAKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 116 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y I + P + Sbjct: 117 NGVLRNIQRQLTPLSTESETLSYNTPGWLIKRLKAAYPDNWQEIILQSHERPPMWLRNNR 176 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + + L A + L P+ + +LP F EG VQD +A L Sbjct: 177 LSQSRDAYLATLSELEIEASAGLSDDAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 236 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N VLD CAAPGGK+ + ++ A+D +RLE+++ NLDRL L AE I Sbjct: 237 LAPQANELVLDACAAPGGKSCHLLELEPSIQLVAVDFDAKRLERVQQNLDRLSLKAEVIH 296 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + + FD +L+DAPCS+TG IRRHPD+ W R DI + A QR++L Sbjct: 297 GDAANIDSWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQRQILDHSW 356 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + A + I Sbjct: 357 KWLKPGGTLLYATCSILPQENRDQISAFLARTADAKLDTLAQQASSQDIGW--------- 407 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 408 -QITPG--------QHNMDGFYYARLLK 426 >gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587] gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2] gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587] gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2] Length = 434 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 9 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 64 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 183 VNHQYHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432 >gi|294010239|ref|YP_003543699.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S] gi|292673569|dbj|BAI95087.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S] Length = 429 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 155/444 (34%), Positives = 219/444 (49%), Gaps = 27/444 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR + LL V+R+ L L A + L+ D+ LV AI TLR LP Sbjct: 11 PGLPARRAALRLLDAVLRRGDPLELAL-----HGAAQGLAPADRALVHAIAAETLRHLPD 65 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA++D LP + +LR+++ Q+L L A +A + A+ D R Sbjct: 66 LDALIDGATRQPLP-HDAKARMVLRIALIQVLALGTAPHAAIATALPLV--DGGPRKLVH 122 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 V L R +P R +G A + A +D+++ Sbjct: 123 GVFGTLTRADPTLPSP-------PALPPETAGRWAAQWGDAMPQAAAHAYAQRPPVDVSL 175 Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + T WA LN L G +RL E I LPGF EG WWVQD +AS P +L G Sbjct: 176 RDPARTAHWAEALNGRSLAPGHVRLPEGAV-IPDLPGFGEGAWWVQDLAASTPARLLGAG 234 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCAAPGGKT QL +G +VTA+D SK+RLE+L NL R L A + + D Sbjct: 235 EGRCVLDLCAAPGGKTMQLAAAGWRVTAVDQSKKRLERLSENLARTGLSAAIV-QDDLRA 293 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P+ DAVL+DAPC++TG RRHPDVL I + A Q +LL + +++KPGG Sbjct: 294 WRPEAPADAVLLDAPCTATGIYRRHPDVLHRIGPRQIAEMAELQAELLARAAAWLKPGGT 353 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL++ + E+ V + L + P L A + +A + +GW+R PD+L Sbjct: 354 LVYATCSLEQAEGEDQVARFLDARPDFGPL----PAMPAELPDGIAPAAQGWVRTLPDIL 409 Query: 421 EKIDGVSSGMDGFFAVALRRLIQP 444 G DGFF L R +P Sbjct: 410 A----AQGGTDGFFVARLIRSTKP 429 >gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae bv. albensis VL426] gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TMA 21] Length = 426 Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183] gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175] gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183] gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175] Length = 428 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 120/448 (26%), Positives = 197/448 (43%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ + +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAELCYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL + Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLAKPLKGKQRIIHQLLIIGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + LP F EG VQD +A L Sbjct: 176 LSQSRTEYLAALAELEIEASEGSSADAILLAHPKDVAILPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQANELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIDSWWQGGQFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + I Sbjct: 356 KWLKPGGTILYATCSILPQENRDQISAFLERTADAKLDTLSQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385] gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385] Length = 434 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 9 MNVRAAAASALYQVVDLGRSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 64 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENLLQVKAFLERTP-DARLVGSDPAQP---------- 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432 >gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39] gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51] gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226] gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51] gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39] gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226] Length = 434 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 9 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 64 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 302 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432 >gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus stomatis DSM 17678] gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus stomatis DSM 17678] Length = 447 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 110/467 (23%), Positives = 203/467 (43%), Gaps = 50/467 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR ++ +L + L+ + L +D+ V +V + +D Sbjct: 1 MSARYLAYKILFDIEVNGNYSNMALNKYLNE---AGLDDQDKGFVTELVYGIIEKKRYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ V + + ++S++ +LR+ V Q++Y+D V DYA ++ +V K+ ++ A Sbjct: 58 YMINKVSKIKVRKMQHSVKLVLRMGVYQLVYMDGVTDYAAINESVNIMKK--LDKRSASF 115 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN++LR +SR E+ A W E L YG ER AI A Sbjct: 116 VNAVLRNISRNLDEVKDISLNTVDKLAIYYSYENWIVENLVKEYGFERTEAILRALSQKP 175 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES-----------------IVSLPGFA 219 I L V ++ ++ G + + E+ I P F Sbjct: 176 NIYLRVNRTKLRPGQSMDYLVGQIIGRIIDQGLEASRVEGLEEAIKVKGLKSIDKHPLFR 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 EG VQD S+ + ++ VLDLCAAPGGK+ + + + + + D+ ++ Sbjct: 236 EGYVSVQDISSILVAKVMNPKRESRVLDLCAAPGGKSTHIGELMENTGHLISQDIFDHKI 295 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + + RL L + DA FD VL D PCS G +RR P++ + + Sbjct: 296 KLMNTYARRLGLNNMEARLGDALVLNDDYIGKFDYVLCDVPCSGMGIVRRKPEIKY-KKE 354 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 ++++ Q ++L S++K GGI+++S C++ +Q++ EVV + L + + Sbjct: 355 EEVLNLPDLQYQILENASSYLKEGGILIYSTCTIFRQENMEVVDRFLANHKDF------D 408 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S+ + + + ++I PD E MDGFF ++++ Sbjct: 409 LDDLGSVKEFLGIGDKDLVKILPDRYE--------MDGFFICRMKKI 447 >gi|225418642|ref|ZP_03761831.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme DSM 15981] gi|225041829|gb|EEG52075.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme DSM 15981] Length = 457 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 112/470 (23%), Positives = 199/470 (42%), Gaps = 44/470 (9%) Query: 1 MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M G+ R + +L V+ + + +L+ ++ L + D+ + + T Sbjct: 1 MAKRTDRGLENREIVLDILMEVLERGSFVHMVLNQAL--DKYQYLDKADRAFITRLTEGT 58 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L +L +IDA+++ + + K ++ LLR+SV QILY+D V D AV + AV+ A + + Sbjct: 59 LEYLIQIDAIINQYSKTKTQKMKPVIRNLLRLSVYQILYMDRVPDSAVCNEAVKLAAK-R 117 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR ++REK + + +P+W E E YG A+ A + Sbjct: 118 RFEGLKGFVNGVLRTIAREKGTIAFSEPWLELSLPQWMYEMWERQYGAGTATAMGKAFLK 177 Query: 175 PLYIDLT------------------VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 + + E+ + G+ + + L Sbjct: 178 DKKTTVRCNLQALSRELPGISPEEAWERTAESLREQGVEAAPLGDGLFNLSGYDRLEELS 237 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSK 273 FA G VQDAS+++ +L V+D+CAAPGGK+ + V A D++ Sbjct: 238 AFARGWIQVQDASSAMVGRLAAPKRGDYVIDVCAAPGGKSLHIADLLDGTGMVEARDLTF 297 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWT 331 ++ E + N+ R + MDA + + D ++ D PCS G + + PD+ Sbjct: 298 QKAELIEENIRRCGFENIRAVVMDALWEDEESVEKADLLIADLPCSGLGILGKKPDIKQN 357 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + + + A QR++L +VKPGG +++S C++D ++EE + + P Sbjct: 358 MTQEKMKELADLQRQILSVVWRYVKPGGRLIYSTCTVDSMENEENARWFAGNFP----FE 413 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 P++ + EGWI+ P + MDGFF R Sbjct: 414 PVDLRPALEPRFPVESLKEGWIQFLPGI--------HPMDGFFISVFTRK 455 >gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4] Length = 427 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 210/453 (46%), Gaps = 44/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSNALP-----AAQQNVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERV-LAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAVLRNYQRSQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + + P +++LPGF +G VQDA+A + Sbjct: 175 VNHQHHTRDEYLALLKNENIDSTPHSQAMDALKLAAPCDVMTLPGFEKGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + +LD CAAPGGKTA SG++V A+D RL+++ NL RL+L A Sbjct: 235 SINYLEPKDGELILDCCAAPGGKTAHILERTSGSEVVAIDCDDTRLKRVHENLKRLNLQA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R DDI A Q ++ Sbjct: 295 KVVCGDARHPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAALQSEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +KPGG +V++ CS+ Q++ E V+ L + +LV Sbjct: 355 DAMWTQLKPGGTMVYATCSITPQENVEQVKAFLART-ADAQLVDSEPHQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +I P MDGF+ L + Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLTKK 425 >gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1] gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1] Length = 429 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 123/448 (27%), Positives = 200/448 (44%), Gaps = 35/448 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K +SL+ L + A S +D+ L+ I +R LP+I+ Sbjct: 1 MNLRALAAKAIFEVLEKGVSLSVALPDQQKHLA----SGKDKALLAEICYGVMRTLPQIE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L K+ + QLL V Q+ + + +A + E A R + K+V Sbjct: 57 KRISECLEKPLKGKQRIIHQLLIVGCYQLYFTRIPSHAAISETAE-ACRQLKFEGMVKVV 115 Query: 125 NSILRRVSREKIELLQRIAGI-SIIPEWFKERLENFYGKERVLAISDACISPLYI--DLT 181 N +LR + R+ L + P W +RL+ Y ++ I + P + Sbjct: 116 NGVLRNIQRQLSPLSTESDTLSYNTPAWLIKRLKEAYPEQWQDIIQQSHERPPMWLRNNR 175 Query: 182 VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + L P+ + +LP F EG VQD +A L Sbjct: 176 LSQSRTEYLAALAELDIEASEGSSADAILLAHPKDVATLPRFHEGAASVQDGAAQWAATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGK+ + K+ A+D +RLE+++ NLDRL L AE I Sbjct: 236 LAPQVNELILDACAAPGGKSCHLLELEPSIKLVAVDFDAKRLERVQQNLDRLSLKAELIH 295 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q+++L Sbjct: 296 GDAANIGSWWQGGLFDRILLDAPCSATGVIRRHPDIKWLRKNHDIEELAELQQQILDHCW 355 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KPGG ++++ CS+ Q++ + + L + + + I Sbjct: 356 KWLKPGGTLLYATCSILPQENRDQISAFLDRTVDAKLDILAQQNSPQDIGW--------- 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP MDGF+ L + Sbjct: 407 -QITPG--------QDNMDGFYYARLLK 425 >gi|227824651|ref|ZP_03989483.1| SUN protein [Acidaminococcus sp. D21] gi|226905150|gb|EEH91068.1| SUN protein [Acidaminococcus sp. D21] Length = 445 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 112/465 (24%), Positives = 184/465 (39%), Gaps = 45/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R ++ +L + + L+ LS D+ L +V T++ Sbjct: 1 MHDAQNPRELALLVLDEIYERGAYANLALNKALR---GNGLSSLDRKLCTELVYGTVKTT 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +D L V+ + L+ +LR+ QILYL + D A V+ A R N + Sbjct: 58 GTLDWYLCRVINRPFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLA-RYYVNEN 116 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 KLVN +LR++SR K A PEW R + +G A+ Sbjct: 117 SVKLVNGVLRQLSRTKATWQFPQKEEDATLRLALTYYHPEWLVRRWKFRFGLPEAEAMCA 176 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEG 221 + + L V +T +L A + + S+ +L Sbjct: 177 YDNAVPSLCLRVNTLFISRKTLLERLQADGCEVEPSKWSPDGIVCRHLPSLETLMKEWGR 236 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278 ++QD S+ + + VLD CAAPGGKT + + K+ A+D+ RL Sbjct: 237 FLYIQDESSMLDADVLAPKPGDLVLDFCAAPGGKTTHLAQKMENKGKIIAMDIHDHRLTL 296 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N RL + + D P DAVLVDAPCS G + R + WT+ Sbjct: 297 IEENATRLGITNIRALLHDGTKPLPGFENRADAVLVDAPCSGLGVLNRRAEARWTKKERT 356 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + Q+K+L Q + VKPGG +++S C+L++ ++ V L S P L+ Sbjct: 357 LSQFPPLQKKILAQAAACVKPGGRLLYSTCTLERDENSRVRTAFLESHPEFRSKAFLHPV 416 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ ++I P G+DGF+ ++ Sbjct: 417 TGERVEE---------LQILP--------WRDGIDGFYLALFEKV 444 >gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae 12129(1)] gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae LMA3894-4] Length = 426 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ + R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLQGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9] gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9] Length = 431 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 121/452 (26%), Positives = 208/452 (46%), Gaps = 38/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ ++ V+ + SL+ L +A + + +RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAAQVVFQVVDQGQSLSAALP-----AAQQNIRERDHALLQEICYGVLRWLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ + L+ V + Q+ ++ + +A V V K K+ + L+ Sbjct: 56 SITTHLMDKPLKGKQRAFHHLILVGLYQLGHMRIPAHAAVAETVNATKDLKKTQ-LRGLI 114 Query: 125 NSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179 N+ILR R++ + + AG P W + L+ Y ++ + ++ +P+++ Sbjct: 115 NAILRNYQRQQEQLDAQSVSHDAGKYGHPSWLLKMLKASYPEQLEAIVTANNTKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + LN V + T P + LPGFA+G VQD +A + Sbjct: 175 VNRQHHTRDEYRALLNDVGIETDLHPEAADALRLLSPCDVSKLPGFADGWSSVQDGAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD CAAPGGKTA ++ V A+D +RRL ++ NL RL L A Sbjct: 235 AVDFLQPQAGELILDCCAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVYENLARLKLDA 294 Query: 291 E--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D+ + FD +L+DAPCS+TG IRRHPD+ W R DI A Q ++ Sbjct: 295 TVLCADARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQAEIF 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ E V+ L + ++ A + Sbjct: 355 DAMWLQLKSGGTLVYATCSITPQENSEQVKAFLART--------ADATLINRGQEADSDM 406 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P S MDGF+ L++ Sbjct: 407 EHPGRQILPG--------ESDMDGFYYAVLQK 430 >gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter cancerogenus ATCC 35316] gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter cancerogenus ATCC 35316] Length = 428 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 206/456 (45%), Gaps = 45/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKK-QNLRSMAAQAVEKVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ ++ + K+ S+ L+ V Q+L+ + +A + VE A K + Sbjct: 55 SQLEWMISRLMARPMTGKQRSVHYLIMVGFYQLLHTRIPPHAALAETVEGAIAIKRPQ-L 113 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKER-VLAISDACISPL 176 L+N +LR+ R++ ELL A + P+W RL+ Y + +A ++ P+ Sbjct: 114 KGLINGVLRQFQRQQEELLAEFAQTEKRFLHPDWLLNRLKKAYPTQWQAIAEANNQRPPM 173 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGF EG VQDAS Sbjct: 174 WLRVNRTHHKRDEWLALLEESGMSGFIHEAYPDAVRLASPAPVHALPGFEEGWVTVQDAS 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT + A V A+DV ++RL ++ NL RL Sbjct: 234 AQGCMTWLEPKNGEKILDLCAAPGGKTTHILEVAPQADVLAVDVDEQRLSRVYDNLKRLG 293 Query: 288 LYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 294 MKA-QVKQGDGRTPADWCGNTQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQ 352 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L +K GG +V++ CS+ +++ + + L+ +P + Sbjct: 353 SDILDAIWPHLKAGGTLVYATCSVLPEENSQQIAAFLKRTPDAA--------------LH 398 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +PE ++ + DGFF L + Sbjct: 399 DTGTPE-------QPGQQNLPGAEEGDGFFYAKLIK 427 >gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae DSM 12163] Length = 456 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 218/457 (47%), Gaps = 44/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D L++ + LR L Sbjct: 28 MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKSVGDKDAALLQELCYGVLRTL 82 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ + K+ +L L+ V + Q+++ + +A + VE A K + Sbjct: 83 PQLEWIISKLMSRPMTGKQRALHFLIMVGLYQLMFTRIPPHAALAETVEAAVALKRPQ-L 141 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N + +R E ++ + + P+W ERL+ + + + + ++ P+ Sbjct: 142 KGLINGVLRQFQRQQDELMQQMNDGDQQYLHPKWLLERLKRAWPVQWQQIVAANNQRPPM 201 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDAS 229 ++ + +TW L ELP ++ LPGF +G VQDAS Sbjct: 202 WLRVNRQHHSRDTWLALLEESGKQAFTHPRHSDALRLELPCAVHQLPGFDQGWVTVQDAS 261 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L + +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL+ Sbjct: 262 AQGCVALLAPRDGEQILDLCAAPGGKTTHILEAAPQAKVLAVDVDAQRLARISENLQRLN 321 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+AE + D +C +LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 322 LHAE-VKLGDGRTPAAWCGDRLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 380 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L ++K GG ++++ CS+ +++ + + L+ V + + Sbjct: 381 QQILDAVWPYLKSGGTLLYATCSVLPEENHLQISQFLQRHANAVLVETGDLTQP------ 434 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I++ P + G DGF+ L + Sbjct: 435 -------GIQVFPQV--------DGGDGFYYAKLVKK 456 >gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea sp. MED297] gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297] Length = 427 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 117/447 (26%), Positives = 209/447 (46%), Gaps = 34/447 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N RL+++ +L V+ + SL L + Q ++ +V + R+ +D Sbjct: 2 TNTRLIAAEILLQVVDEGRSLNDELPRRLKH-----IDPDQQAFLQQLVYGSTRYYFALD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ ++ + K+ + LL + + Q+ +LDVA++A ++ VE A + + LV Sbjct: 57 ELINLLVEKPIRGKERLVHMLLAIGLYQLWHLDVAEHAAINETVE-ATLTAKKQWAKNLV 115 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV- 182 N+ LRR RE+ +L ++ P W +RL Y ++ + + P+ + + Sbjct: 116 NASLRRFQRERETILPQLRRTESFPGWLNKRLRQAYPEQFADICVQSNQPGPMTLRINRR 175 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQL 236 E W L P +++LPGF +G VQD +A + L Sbjct: 176 MMTREAWLLLAIKEGLVAHSTNHSPVGATLASPAPVLALPGFEDGALSVQDEAAQMCATL 235 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + VLD C+APGGKT L + ++ A+D+ + RL +++ NL+R+ + AE I E Sbjct: 236 LPVTDGQRVLDACSAPGGKTGHLLEKADIELVAIDIDEHRLGRVQENLERIGVSAELIAE 295 Query: 296 --MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + FDAVL+DAPCS TG IRRHPD+ R + DI + Q +LL + Sbjct: 296 DAAEIERWWDGVPFDAVLLDAPCSGTGVIRRHPDIKLLRKSADIKALSQVQSRLLDRLWG 355 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG ++++ CS+ ++ + + L++ P E + + + + E + Sbjct: 356 TVKPGGYLLYATCSVLPDENTDRIAAFLQAHPEAQE---------QPLALQADVDTEHGV 406 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 + P S G DGF+ L++ Sbjct: 407 QWLPQ--------SDGHDGFYYALLKK 425 >gi|255282547|ref|ZP_05347102.1| ribosomal RNA small subunit methyltransferase B [Bryantella formatexigens DSM 14469] gi|255266840|gb|EET60045.1| ribosomal RNA small subunit methyltransferase B [Bryantella formatexigens DSM 14469] Length = 453 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 99/461 (21%), Positives = 187/461 (40%), Gaps = 39/461 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N R + L + + +L ++ L +RD+ + V T+ + +ID Sbjct: 7 VNTREIILGALMAITEEEQYCHIVLRDVLA--KYQYLEKRDRAFISRTVEGTMENMIQID 64 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L+ + K +++ +LR+S+ Q+ Y+D V AVV+ AV+ ++ K Sbjct: 65 YILEQFSTVKVQNMKPAIRNILRMSIYQMQYMDGVPHAAVVNEAVKLTQK-KGFYTLKGF 123 Query: 124 VNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR R + + ++ +PEW ++ + V I Sbjct: 124 VNGVLRAAERGIGEVRFPDAERTPRKYLSVRYSMPEWILQKWLAQFDFATVEKICRGLWQ 183 Query: 175 PLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWV 225 + ET KL + + + ++ F EG++ V Sbjct: 184 ESRTCIRCNLSRAPKETIIEKLREQNITVKEVPYLPYALEISDYNYLQAINAFKEGLFQV 243 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282 QD S+ + ++ +D+CAAPGGK+ L V A D++ ++ ++ N Sbjct: 244 QDVSSMLVAEVAAPKWGDYCIDVCAAPGGKSLHLSDKLNGSGYVEARDLTDYKVSLMQEN 303 Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 L+R I DA + + D +L D PCS G I R PD+ + + Sbjct: 304 LERTGRINMTAIRQDATVFDGASVEKADILLADLPCSGLGVIGRKPDIKYKMTEAKQQEL 363 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QRK+L S+VK GG +++S C++ +++ V+ L + P +E + Sbjct: 364 VKLQRKILDTVWSYVKVGGTLIYSTCTIGADENQYNVKWFLENYPFRLESIDPYLCDA-- 421 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G++++ P + G DGFF +R+ Sbjct: 422 --LKSRTTKAGYLQLLPGV--------HGTDGFFIARFKRV 452 >gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia enterocolitica subsp. palearctica Y11] gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 429 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 214/456 (46%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ELL+R A + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ LPGF G VQDAS Sbjct: 175 WLRVSRLHHSRIEYLGLLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V L +LDLCAAPGGKT ++ A V A+D+ ++RL +++ NL RL Sbjct: 235 AQGCVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKENLQRLK 294 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A D+ D ++C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 LHA-DVRVGDGRTPDEWCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++ +K GG++V++ CS+ +++++ + L+ +LV + Sbjct: 354 SEIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRH-SEADLVETGTVSAPG---- 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGF+ L + Sbjct: 409 ----------------KQNLPHPEDGDGFYYAKLIK 428 >gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum H04402 065] Length = 442 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 201/456 (44%), Gaps = 38/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ +L V+ + +L + S L D+ L+ IV TL++ +D Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLNKS---NLKDNDKALITEIVYGTLKYKETLDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH----- 119 ++ L + + ++ +LR+++ QI YLD + +A V+ AVE +K+ Sbjct: 60 IIQSYLRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKISIKYSKLVNG 119 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + + + L++ + + P+W + + YG E I I Sbjct: 120 VLRNYIRTYKNKKFYDHRNNLEKFSFMYSYPKWLIKMFISQYGIEIAEKILKGLNERPNI 179 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D + KL + ++I P F EG VQD S Sbjct: 180 TVRVNNLKIDYDEAFEKLGEYGYNIEEGYICPEAIQIIKGKNIEKNPLFIEGNITVQDES 239 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + VLDLC+APGGKT + + + +KV A DV + +L + N RL Sbjct: 240 AMLVAPSMELDEESIVLDLCSAPGGKTTHISEIMNNKSKVYAYDVHQNKLSLIESNAKRL 299 Query: 287 HLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + DA + K + VL+D PCS G IR+ P++ WT++ +I Q Sbjct: 300 GIKNIETDVGDAAVFNKKLKEKAHRVLMDVPCSGLGIIRKKPEIKWTKNEREIKNIIAIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK++ G S+++ GGI+++S C+L+K+++EE + L+ ++ PL +I Sbjct: 360 RKIMNNGASYLEEGGILLYSTCTLNKEENEENINWFLKKHKN-FKIEPLYYGDVDNI--- 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++ I P+ MDGFF L++ Sbjct: 416 -IYHKEGFVSILPN---------DKMDGFFIAKLKK 441 >gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX 330286] gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC27] gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae INDRE 91/1] Length = 426 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H] gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H] Length = 440 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 116/458 (25%), Positives = 201/458 (43%), Gaps = 42/458 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N R +++ V+ + SL+ L L +D+ L++ I LR+LP ++ Sbjct: 3 INIRALAAKCCYAVIDQGRSLSDELPK-----QQDKLIGKDKGLLQEICYGVLRYLPELE 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + ++ + K+ LL V V QI Y+ + D+A V V A + +N H LV Sbjct: 58 NDVSQLVQKPIKGKQRVFHFLLLVGVYQIRYMRIPDHAAVSETV-AATKTLKNDHMKGLV 116 Query: 125 NSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR K + P WF ++++ Y + + P Sbjct: 117 NAVLRGFLRALEAENKQVNKTDKKIPDPIKYNHPGWFIKKIQQAYSDQWQAILDANQQKP 176 Query: 176 -LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQD 227 +++ + + L + LPGF +G +QD Sbjct: 177 PMWLRVNQQHHTSEQYQALLEEAEIEIAHVEPNSQAIELAKPLDVAKLPGFDDGWVSIQD 236 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLD 284 +A +L N VLD CAAPGGKT +I +TA+D+ + RL ++ NLD Sbjct: 237 GAAQQAARLLDCQPNDIVLDCCAAPGGKTCHIIEQTPDIASMTAIDIEEGRLTRVHENLD 296 Query: 285 RLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 RL+L + ++ + FD +L+DAPCS TG IRRHPD+ W R DDI K Sbjct: 297 RLNLTANVITADAATQNWWSGEQFDRILLDAPCSGTGVIRRHPDIKWLRKADDIDKLVVL 356 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L S +KPGG ++++ CS+ +++ + + + + +L+ +N ++ Sbjct: 357 QQQILDNIWSLLKPGGTLLYATCSVLPEENSLQISRFIEQN-QDAQLIAINGNTPETDKN 415 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A+ ++ PD + MDGF+ L +L Sbjct: 416 AIG------WQLLPD--------AENMDGFYYAKLLKL 439 >gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753] gi|156867372|gb|EDO60744.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753] Length = 446 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 105/462 (22%), Positives = 185/462 (40%), Gaps = 38/462 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +G NARL + L V + +LD S L RD A+ L Sbjct: 1 MSAGKNARLTALKALLRVEEGKGYSNLVLDHGLAAS---GLDGRDAAFASALFYGVLERR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D + L + ++++LR+ Q+LY+D V A V+ +V+ + K+++ Sbjct: 58 ITLDYQISRYSKMPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRAVKKDK- 116 Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + VN ILR R+ + P+W + YG+ER L + + Sbjct: 117 ASGFVNGILRSFIRDGCPCRLPAETADDYLMVKYACPQWIIDLWITSYGRERALELVENL 176 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVW 223 + + V E +L + T E SI SL F +G + Sbjct: 177 TGRPPLAVRVNSCKTTREALTERLKEEGVETKEVPGVEQALTLERSGSIESLSSFQDGFF 236 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD ++ + Q V D+CAAPGGKT + + + ++++ D+ +++ ++ Sbjct: 237 HVQDLASQLCCQALSPKPGERVYDVCAAPGGKTFTMAELMENQGELSSFDLYPAKVKLIQ 296 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL L + DA D VL D PCS G IRR P++ + ++ + + Sbjct: 297 QGAKRLGLSVVNARIRDAAHPEEMLPPGDKVLCDVPCSGLGIIRRKPEIRY-KNKNMLDS 355 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L + K G++++S C+L+ ++ +V ++ L P E P++ Sbjct: 356 LPDLQYLILCISANLTKKHGVLLYSTCTLNPGENNQVARRFLLEHP-DFEPYPVSLPEGY 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +G DGFF RRL Sbjct: 415 ERNSFDRENE-----------ATLFVKKNGTDGFFFSGFRRL 445 >gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus DK 1622] gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus DK 1622] Length = 438 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 118/456 (25%), Positives = 187/456 (41%), Gaps = 38/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ +L+ V L +LD + +S + RD LV + R +D Sbjct: 1 MNARALAIQVLARVRATDAYLNVVLDTQLSESPPK--DPRDAALVTELTYGATRRQLALD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L + + LR+ QI + V A V V+ K R A Sbjct: 59 YAITRFADRKLDALEDKVLAALRIGAYQIFHTRVPARAAVAETVQALKEVGLTR-AAGFT 117 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N+ILR+++ L ++ P+W ER +G+ER A+ A Sbjct: 118 NAILRKLAALPAPPLPPASDVALHLSVRESHPQWLVERWLRQFGRERAEAMLVADNQAPA 177 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + + + +L + + + + + G+AEG+W VQD Sbjct: 178 VVVRANTAKVTRDALLAQLQEMGVDAKATTVSPVGITLPSVGRVEDVYGYAEGLWQVQDE 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 +A + VLD CAAPGGK+ S V A+D+ +L K+ RL L Sbjct: 238 AAQLVGVYGAIPETARVLDACAAPGGKSCHQAQS-HDVVAVDLHAHKLRKIEAEARRLGL 296 Query: 289 YA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + F A LVDAPCS GT+RRHP++ + R +DI + A QR Sbjct: 297 QPRLKAYAHDAAEPFPEEWGEFHAFLVDAPCSGLGTLRRHPELRYRRKEEDISRLATLQR 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L V PGG++V++ C+++ Q+ ++ V+ LRS P P+ + A Sbjct: 357 RILENCQDAVPPGGLLVYAVCTMEPQEGQDQVEMFLRSHPEWTAEPPVLPGLKLPMSQA- 415 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R P G DGFFA LR+L Sbjct: 416 ------YLRTLPG--------PEGFDGFFAARLRKL 437 >gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM 11079-80] Length = 426 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 200/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE + K R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGTQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae RC9] gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae B33] gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MJ-1236] gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera CIRS 101] Length = 426 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 200/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV A Sbjct: 355 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSEPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80] gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52] gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395] gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457] gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2] gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80] gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52] gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457] gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395] gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2] gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395] gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae MAK 757] Length = 434 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 9 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 64 SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV + A Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432 >gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b] gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b] Length = 443 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 193/456 (42%), Gaps = 35/456 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + L + + T ++ + ++ +D L +V TL +D Sbjct: 1 MNVREAALDTLMKIEQGGAYSTIAVNDTLK---QKKVAPKDVGLYTELVYGTLSRKGTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + S + + LLR+SV Q+ YLD V D AV+ AVE AK+ + +K Sbjct: 58 YILKDRI-RSPKKLDKFVLPLLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGHHLGTSKF 116 Query: 124 VNSILRRVSREKIELL------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR V RE +RIA PEW YG E AI P Sbjct: 117 VNGVLRNVLREGFPDFSSLTDAERIAIEHSHPEWLVSDWIELYGVETAEAICRLNNEPAP 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDAS 229 + + V + ++L + T L ++ + P EG+ +QD S Sbjct: 177 VTIRVNRKRISVDEMMNRLADAGVMTSRSELSADGLVVESGNVHATPFIEEGLLSIQDES 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + I G + +LD CAAPGGK + G +TALD+ + + + RLH Sbjct: 237 SMIVADALGVSKDDVILDACAAPGGKAMHTAERMQGGSLTALDLHPHKAKLIDQQAKRLH 296 Query: 288 LYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + +DA + ++ FD +L+D PCS G IRR PD+ WT+D + Q Sbjct: 297 INGVTALALDARLAGERFEEESFDRILLDVPCSGLGVIRRKPDIKWTKDKAQLENLPKIQ 356 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+++ + +KPGG +V+S C++D ++E +L + E + Sbjct: 357 RQIIDAVLPLLKPGGTLVYSTCTIDPSENETQADYMLSKGLVWDETL---KGRLPQSVRP 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 M S +++ P G DGF+ A ++ Sbjct: 414 MMESDRAELKLLPTTF--------GTDGFYIAAFKK 441 >gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326] gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326] Length = 426 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 116/454 (25%), Positives = 198/454 (43%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGQSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ + L KK L+ V + Q+ ++ + +A V VE K + L+ Sbjct: 56 SIANELMDNPLKGKKRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKTLRGP-SLRGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ L + AG P W L Y ++ + +P+++ Sbjct: 115 NAVLRSYLRDQEALDEKAVSHNAGKYGHPNWLLNMLRENYPEQWEQLVDANNSKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + P + LPGF G VQDA+A + Sbjct: 175 VNRQHHTRDEYLELLKDENIEFSVHPEASDAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V + +LD CAAPGGKTA +V A+D +RL+++ NL+RL L A Sbjct: 235 SVNYLQPQDGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDVKRLDRVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q +++ Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIM 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ V+ L + + + Sbjct: 355 DAMWGQLKDGGTMVYATCSITPQENILQVKAFLERTQNA--------------TLVGSDI 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 ENPGRQILPG--------EEDMDGFYYAVLVKQA 426 >gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33] gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10] gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33] gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10] Length = 434 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 200/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 9 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 63 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 64 SISQALMGKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 122 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 123 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 182 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 183 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 243 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLELTA 302 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 303 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 362 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +V++ CS+ Q++ V+ L +P LV A Sbjct: 363 DAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTP-DARLVGSEPAQP---------- 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 412 ---GRQILPGEEA--------MDGFYYAVLSK 432 >gi|323137517|ref|ZP_08072594.1| sun protein [Methylocystis sp. ATCC 49242] gi|322397143|gb|EFX99667.1| sun protein [Methylocystis sp. ATCC 49242] Length = 471 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 172/430 (40%), Positives = 238/430 (55%), Gaps = 8/430 (1%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 ++ V++ L S L RD L R+I V+LR L I VL +L Sbjct: 49 IICDVVQGGHRLDECFSANAVPSRLTGLDPRDVALTRSIATVSLRRLGVIRHVLSELLEK 108 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 LPR+ L+ L + AQ+L+LD AD+A VDLAV + + + FA LVN +LR + R Sbjct: 109 GLPRQAGRLEYTLIAAAAQLLFLDAADHAAVDLAVRATRLEPKTGAFAGLVNGVLRNLLR 168 Query: 134 EKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 + E L+ A P W +R YG E AIS + +D++VK + E WA + Sbjct: 169 RREEFLELAASGEYDTPPWLAQRWRKHYGDEAAHAISAMHMLEPPLDVSVKSNPEEWARQ 228 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L+ ++LPTG +RL+ +I LPG+A+G WWVQDA+A++P +L G + VLD+CAAP Sbjct: 229 LDGLVLPTGSVRLRTRA-AIPELPGYADGEWWVQDAAAALPARLLGAKPDERVLDMCAAP 287 Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 GGKTAQL+ + A V ALD S RL+ L NL RL L A DI DA Y + FDA+LV Sbjct: 288 GGKTAQLVHARAHVVALDRSAERLKLLAANLARLDLRA-DIAVGDATGY-QAQPFDAILV 345 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS+TGTIRRHPDV WT+ DI A Q K+L + K GG +V+ CSL+ ++ Sbjct: 346 DAPCSATGTIRRHPDVPWTKKPGDIDTLAALQAKMLARAALLTKAGGRIVYCTCSLEPEE 405 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 E+ + LR +P P+ +A A ++ +G +R P D +G+DG Sbjct: 406 GEQQIAAFLRRNP-DFRREPITAAEGVP---AEFINRDGDLRTLPCFWPNEDPRLAGIDG 461 Query: 433 FFAVALRRLI 442 FFA L R Sbjct: 462 FFAARLTRQA 471 >gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032] gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter turicensis z3032] Length = 425 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 209/453 (46%), Gaps = 44/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + V+ K SL+ +L +S +D+ L++ + LR L + + Sbjct: 1 MNLRSLAAQAIEQVVEKGQSLSTVLP-----PLQHKVSDKDKALLQELCFGVLRTLSQQE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + F L+ Sbjct: 56 WLINKLMSRPMTGKQRTIHYLIMVGLYQLLYTRIPPHAALAETVEGAVAIKRMQ-FKGLI 114 Query: 125 NSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDL 180 N +LR+ R++ E + P W +RL+ + +E + P+++ + Sbjct: 115 NGVLRQFQRQQDELLAEFAGQDARWLHPMWLLKRLQTAWPQEWQAVVQANNERPPMWLRV 174 Query: 181 T-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + W L + P + +LPGF +G VQDASA Sbjct: 175 NRQHHSRDEWLTLLEENGMTGHIHPRYPDAVRLEAPAPVSALPGFEQGWVTVQDASAQGC 234 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAE 291 V+L N ++LDLCAAPGGKT ++ + + V A+DV +R+ ++ NL R+ + AE Sbjct: 235 VELLAPQNGETILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRISRVYENLKRVKMRAE 294 Query: 292 DIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D +C FD +L+DAPCS+TG IRRHPD+ W R DI + A Q +L Sbjct: 295 -VKVGDGRFPATWCGDMQFDRILLDAPCSATGVIRRHPDIKWLRRDSDISELAQLQSDIL 353 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG ++++ CS+ +++ E ++ L +P + A + Sbjct: 354 DAIWPHLKPGGTLLYATCSILPEENSEQIRAFLTRTPDA-----------QLDGTGSAQT 402 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 P I+ P E DGFF L + Sbjct: 403 P--GIQNLPGATEG--------DGFFYAKLIKK 425 >gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase B [Enterobacter sp. 638] gi|224493252|sp|A4WF97|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638] Length = 428 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 122/456 (26%), Positives = 209/456 (45%), Gaps = 45/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKK-QNLRSMAASAIEKVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+ + ++ ++ + K+ ++ L+ V Q+L+ + +A + VE A K + Sbjct: 55 PQQEWLISKLMSRPMTGKQRTIHYLIMVGFYQLLHTRIPPHAALAETVEGAVVIKRPQ-L 113 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N +LR+ R++ ELL A + PEW +RL+ Y K + ++ P+ Sbjct: 114 KGLINGVLRQFQRQQEELLAEFADSDKRFLHPEWLLKRLQKAYPSKWEAIVEANNQRPPM 173 Query: 177 YIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGF +G VQDAS Sbjct: 174 WLRVNRNHHTRDEWLALLETAEMNGFTHDAYPDAIRLASPAPVQALPGFEQGWVTVQDAS 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + N +LDLCAAPGGKT I A V A+DV ++RL ++ NL RL Sbjct: 234 AQGCMTYLEPQNGDHILDLCAAPGGKTTHILEIAPKASVMAVDVDEQRLSRVYDNLKRLG 293 Query: 288 LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + + D ++C + FD +LVDAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 294 MKAE-VKQGDGRTPGEWCGDEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQ 352 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG +V++ CS+ +++ + + L+ + Sbjct: 353 SEILDAVWPHLKPGGTLVYATCSVLPEENSQQIAAFLKRTSNATLRTTGTPDKP------ 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGFF L + Sbjct: 407 -------GVQNLPG--------AEDGDGFFYAKLIK 427 >gi|182679035|ref|YP_001833181.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634918|gb|ACB95692.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 463 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 166/439 (37%), Positives = 249/439 (56%), Gaps = 7/439 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G+ R ++ +L ++ K +L E L RD+ L R+IV V LR L Sbjct: 29 AGLGVRRTAAAILRAIVTKGQALDDFFAPESNPEILAGLEPRDKALARSIVTVALRRLGT 88 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 I A L +L LPR+ L+ +L V+ AQIL+LDV D+A VDLAV + D ++ FA Sbjct: 89 IRAALTGLLAQGLPRQAPDLEWILLVAGAQILFLDVPDHAAVDLAVRATRLDPKSTPFAP 148 Query: 123 LVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR ++R + ++ + A P W +R YG+E AI+ A +D+T Sbjct: 149 LVNAVLRNLARGREKILAESDALAMDTPAWLAKRWRETYGEELARAIALAHREEPTLDVT 208 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 V + + WA KL A +LPTG +RL+ I LPGFAEGVW+VQDA+A++P +L Sbjct: 209 VLAEPDLWAEKLGARLLPTGSLRLETHA-PIADLPGFAEGVWFVQDAAAALPARLMPAGP 267 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 L + D CAAPGGK AQL +GA VTA+D S RL++L N RLHL AE + Sbjct: 268 GLRIADFCAAPGGKAAQLAATGAHVTAIDRSATRLKRLSANFARLHLEAEVL--AADVLT 325 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD +L+DAPCS+TGTIRRHPD+ W + DI+ A Q ++L + + +K GG + Sbjct: 326 FEAEPFDGILLDAPCSATGTIRRHPDIAWIKQPKDILALALAQARMLDKAATLLKAGGTL 385 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++ CSL+ ++ EE ++ L++ P P++ + +++ ++ G +RI P + Sbjct: 386 IYCTCSLEPEEGEERIEAFLQNHP-EFRRRPISP--GEVGNLSEIINQNGDLRILPAHFQ 442 Query: 422 KIDGVSSGMDGFFAVALRR 440 + SG+DGFF L R Sbjct: 443 GTEARFSGLDGFFVSRLVR 461 >gi|85703964|ref|ZP_01035067.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. 217] gi|85671284|gb|EAQ26142.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. 217] Length = 422 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 153/439 (34%), Positives = 229/439 (52%), Gaps = 19/439 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + AR + HLL V+ + L+ A LS D+ + + TLR L Sbjct: 3 KPTLTARSAAVHLLDRVLGEGR----LMSELIAGGALDALSPPDRARAQRLATDTLRGLD 58 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R D +L L + P +Q +LR++ ++ + VV+ AVE + + Sbjct: 59 RADLLLSRHLRKAPP---LPVQNVLRLATVELAQGG-ESHGVVNEAVETIGQSPRHAKLK 114 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR+++ E + + +P W + L + +GK V A+ A + +D+T Sbjct: 115 GLVNAVLRKMTEEAPRSWNDL-RLPNLPTWLRAPLVDAWGKGPVAAMERAHFAGAPLDIT 173 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E WA +L A +LPTG +R + P + +LPG+A G WWVQD +A++PV + Sbjct: 174 VKSDPEVWAERLGATLLPTGSLR-RTDPGQVSALPGYANGEWWVQDVAAALPVAVLAPKP 232 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +LDLCAAPGGKT Q+ +GAKVTALD+S+RR+ ++ NLDR L A I DA D+ Sbjct: 233 GEQILDLCAAPGGKTLQMAAAGAKVTALDLSERRMARVTENLDRTGLTATCI-VGDALDH 291 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +DA+L+DAPCS+TGTIRRHPD+ +D D Q +L ++ +KP G + Sbjct: 292 H-GGPYDAILLDAPCSATGTIRRHPDLPHAKDGSDFGALIALQAAMLDHALTLLKPEGRL 350 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VF CSL + E V++ L P L + + ++ EG +R+ PD Sbjct: 351 VFCTCSLLPDEGECQVEEALGRHPD---LTVDRTTLLRPGIEPGWVTEEGGLRLRPDYWA 407 Query: 422 KIDGVSSGMDGFFAVALRR 440 + GMDGFF LRR Sbjct: 408 DL----GGMDGFFIACLRR 422 >gi|229822831|ref|ZP_04448901.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271] gi|229787644|gb|EEP23758.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271] Length = 457 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 103/462 (22%), Positives = 195/462 (42%), Gaps = 43/462 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R + LL + LL+ S L DQ L+ +V +++ + Sbjct: 12 KHNVRFQALQLLVEIDWHDQYSNVLLNRALSQS---ELKPVDQGLLVNLVYGSIQHRLTL 68 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 D L+ + + + ++ LLR++ Q+LYL + D+A ++ AV AK + A Sbjct: 69 DFYLEPFIKG--KKLEPWIRSLLRMTAYQMLYLERIPDHAAINEAVNIAK-LNGHAGLAG 125 Query: 123 LVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 LVN +LR R++ + ++ ++ + W L+ Y + + + + Sbjct: 126 LVNGVLRNFRRQELRSLDSVTDPIEALSIQYSVAPWIVALLQKQYDQASLADLLASLNQR 185 Query: 176 LYIDLTVKFD---IETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQD 227 + ++ + +L A ++ L I+ P F G +QD Sbjct: 186 PRLTARIQAHPNERDQILAQLRAAGYQVEAGNLSPYAIESLDGRIIESPAFQAGRLTIQD 245 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + + +LD C+APGGK + + ALD+S+ +L+ + +++R Sbjct: 246 ESSMLVAPIGRPVAGQRLLDACSAPGGKATHMAFLLQNGHLDALDISQAKLDLVAGHMER 305 Query: 286 LHLY-------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L L + + F L+D + +DAPCS G +RR P++ +T+ DI Sbjct: 306 LGLSQQEGLTISLHATDALDFMPPSGTLYDIIYLDAPCSGLGLMRRKPEIKYTKQASDIE 365 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q +LL S +KPGG +V+S C+L + ++++ V+ L +L P+ Sbjct: 366 ALSMLQSQLLDHVASLLKPGGTLVYSTCTLAQAENQDQVKAFLAR-QSDFQLSPIGPEEV 424 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A L+ +G I + P DGFF + + Sbjct: 425 QG---ASVLTADGMIEVLPQDYL--------TDGFFIARMTK 455 >gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 451 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 123/456 (26%), Positives = 210/456 (46%), Gaps = 36/456 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + ++AR + +L V+ + SL+ LL A ++ +D L++ I R LP Sbjct: 12 TTALSARTAAVQILFQVLEQGKSLSSLLP-----DAQVVIKAQDLPLLQEICFGVCRVLP 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R++ ++ ++ L KK + LL V + QILY + YA VD V AK + + F Sbjct: 67 RLEQIIAQLVDKPLRGKKRIVHCLLLVGLYQILYTRIPVYAAVDEIVNTAKNLQL-QSFQ 125 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LRR RE+ + ++ P+W +L+ Y R + ++ P+++ Sbjct: 126 GLVNAVLRRFLREQESMLAKVDKHWQTLHPDWLVNKLKKVYPNWREIIEANNQKPPMWLR 185 Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233 + + +ET+ L A + + S+ LP FAEG VQD A Sbjct: 186 VNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQDLHAQWA 245 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L N +LD CAAPGGKT ++ A+V ALDV + RL++++ NL R+ A Sbjct: 246 ALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQAT 305 Query: 292 DIIEMDAFDYCPKKL-------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A FD +L+DAPCS+TG +RRHPD+ W R DI Q Sbjct: 306 IVCGDAANPRAWLTKLGKSAVRFDRILLDAPCSATGVVRRHPDIKWLRKEADIEPLVELQ 365 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++KP G+++++ CS+ +++ +++ L+ +P V + + + Sbjct: 366 EQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQRTPDAQLAVLNLPEEVLARNQS 425 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + G DGF+ L + Sbjct: 426 AV-----GFQFIPQ--------TDGGDGFYYAKLVK 448 >gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901] Length = 440 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 195/460 (42%), Gaps = 44/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + L V + + LL + A + D+ V + L+ L +D Sbjct: 1 MNLRELVIKTLVEVEKNNSYVNLLLPKLIANLAKKE----DKDFVVELTYGVLKQLKLLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 + +L + + +RV + Q+ +LD V YA ++ VE KR+ R F + Sbjct: 57 YMAGKLLKKR-SKLPPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKRNY--RGFTGV 113 Query: 124 VNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 VN +LR R + E+ + +A PEW +R N YG + + I Sbjct: 114 VNGVLRNFIRRREEITKIDVSDEVEYLAIAYSHPEWMVKRWLNQYGYTKTVEILKYNNHQ 173 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQ 226 + L + + + LN + + + + LPG+ EG++++Q Sbjct: 174 PNLTLRINTLKISPKAYCDLLNEKNINFKQLPYLPEGVVILDKVGVKELPGYDEGLFYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D + L N +D CAAPGGK+ L + + + A DV RL+ + N Sbjct: 234 DTGSMFIAYLINPEPNSVGIDACAAPGGKSTHLAQLMGNKGIIYAFDVHPGRLKLIEENA 293 Query: 284 DRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + + DA + +L D PCS TG + R PD W + ++I+K + Sbjct: 294 HRLGINIIRCLLGDATRLKLPDGVNPNWILADVPCSGTGVLARKPDARWQKSEEEIIKLS 353 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 +Q ++L + P GI+V+S CS++ +++E VV+ LR +P V + P + I Sbjct: 354 QYQLEILTNLSKLLPPEGILVYSTCSIEPEENEGVVENFLRKNPNFVLVKPPEWFFNLGI 413 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R+ P + DGFF V L++L Sbjct: 414 VKN-----NYYLRLLPGEI---------GDGFFGVILKKL 439 >gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 444 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 199/461 (43%), Gaps = 42/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K + + L + D+ + +V + +D Sbjct: 1 MKPREIAYKILQEVLSKEAYANISFNKHLRS---QELKEIDRGFTKELVFGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + + K L + + Q+LY+D V YA ++ V AK+ + A Sbjct: 58 FILSFFVKKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 +N++LR REK +++ P+W ERL N Y +E+ A+ + Sbjct: 114 INAVLRNYEREKEKVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226 I V DIE L++ + L ++ + EG+ ++Q Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIVYKKGYYLEEALYIDIKNPERHQLYKEGLIYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + + +VLD+CAAPGGKT + + + +V A D+ RLE ++ N Sbjct: 234 DEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENC 293 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D+ K D VL D PC+ G IR+ PD+ +I + Sbjct: 294 KRLGITNVKTEVFDSTFVNEKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK GG +V+S C++ K++++ V+ K L+ P +LV + + Sbjct: 354 IEAQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ G+++ITP + +DGFF L+R+ Sbjct: 413 --LSIETDSLGYVQITP--------LEHEIDGFFISKLKRI 443 >gi|332533679|ref|ZP_08409538.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas haloplanktis ANT/505] gi|332036843|gb|EGI73304.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas haloplanktis ANT/505] Length = 431 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 206/457 (45%), Gaps = 41/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + N R +++ L V+ K SL L A + L +D+ L++ I LR+L Sbjct: 1 MSNVPNVRALAAETLYNVVDKGASLNQELPF-----ASQGLPPKDKALLQQICYGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P ++ ++ L K+ Q LL V + Q+ ++ V +A + V A Sbjct: 56 PSLENYCQHLVEQPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALAQLRALGL 114 Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISP 175 L+N+ILR R++ + + P WF ++++ Y L + +P Sbjct: 115 KGLINAILRSFQRQQAELEEKAKLIPVCLYNHPNWFIKQVQTAYPDSWEALLEENQQQAP 174 Query: 176 LYIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 +++ + +F + ++ L+A + P + SLP F G VQDA Sbjct: 175 MWLRVNQAQFSTQEYSDMLSANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQDA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287 +A + + + +LD CAAPGGKT ++ + A V ALD RLE+++ NL R+ Sbjct: 235 AAQLAARFLEPKADDYILDACAAPGGKTCHILELADADVLALDSDSTRLERVKQNLTRIG 294 Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L A+ + +KLFD +L+D PCS+TG IRRHPD+ W R DI A Q Sbjct: 295 LGADLQCGDASQPHTWWDEKLFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAKLQS 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L +KPGG +V++ CS+ Q++++ V K L ++ VE +PL+ + Sbjct: 355 DILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANN-DDVEHIPLHENDTVTTP--- 410 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +++ P DGF+ L + Sbjct: 411 ------GLQLLPGE----------SDGFYYAKLVKKA 431 >gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 444 Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 199/461 (43%), Gaps = 42/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K + + L + D+ + +V + +D Sbjct: 1 MKPREIAYKILQEVLSKEAYANISFNKHLK---GQELKEIDRGFTKELVFGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + + K L + + Q+LY+D V YA ++ V AK+ + A Sbjct: 58 FILSFFVKKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 +N++LR REK ++ P+W ERL N Y +E+ A+ + Sbjct: 114 INAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226 I V DIE L++ + L ++ S + EG ++Q Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIYIKNPESHQLYKEGFIYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + ++ +V+D+CAAPGGKT + + + KV A D+ RLE ++ N Sbjct: 234 DEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENC 293 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D+ K D VL D PC+ G IR+ PD+ +I + Sbjct: 294 KRLGITNVKTEAFDSTFVNKKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK GG +V+S C++ K++++ V+ K L+ P +LV + + Sbjct: 354 IETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ A G+++ TP + +DGFF LRR+ Sbjct: 413 LNIETA--SLGYVQTTP--------LEHEIDGFFISKLRRI 443 >gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera genomosp. type_1 str. 28L] gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera genomosp. type_1 str. 28L] Length = 442 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 113/460 (24%), Positives = 187/460 (40%), Gaps = 44/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L + + ++ A LS RD+ +V TLR++ +D Sbjct: 1 MNIRELAVRSLLLIWQDGGYSNIVVSRMIKKYA---LSDRDRRFYTELVYGTLRYMAMLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 + + SL + +LR+ + Q+ YLD V A AV A++ + AK Sbjct: 58 RAIGMLSKRSLQQMDAVCAAILRLGLYQLQYLDKVPPSAACYEAVALARKM-GHEGMAKF 116 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN++LR R + +A WF R YG E + + + Sbjct: 117 VNAVLRNALRRPEVFVVPSRQEDEVLHLALTYHQQNWFIRRCLQQYGFEETVKLCRFFDT 176 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWV 225 + + ++ E L + T R E +++ +L A G + Sbjct: 177 IPELCVRIQTQKISREKAMAMLAEKGIVTRPGRYAPESLYIETNDAVQNLELLAAGRAMI 236 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG---AKVTALDVSKRRLEKLRCN 282 QD ++ + + VLD+CAAPGGKT + G V D+ + +L+ +R N Sbjct: 237 QDEASQLVAHVLDPQPGDVVLDVCAAPGGKTTHIASLGGSDCLVYGADIYEHKLQLIREN 296 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 ++LHL I DA + D VLVDAPCS G +RR D+ W + D+++ Sbjct: 297 AEKLHLTNIRTILQDAVRIGERFPAKADRVLVDAPCSGLGILRRKLDLRWRKKEQDLMRL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VKPGGI+V+S C+++ ++ VV+ L+ L + W Sbjct: 357 PSLQTRILNGAAACVKPGGILVYSTCTINTAENAAVVEAFLQRHTEFTLLRAGETCSWPQ 416 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + G+DGFF +RR Sbjct: 417 ----------------PGKYIDVLPQRDGIDGFFIAKMRR 440 >gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336] gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336] Length = 462 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 124/463 (26%), Positives = 203/463 (43%), Gaps = 54/463 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R++++ ++ V+ + SL+ LL + +D L++ I R LPR++ + Sbjct: 24 VRVLAAEVILQVLVQGKSLSTLLPE-----QQSAVKPQDFPLLQEICFGICRVLPRLERI 78 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + +L L K + LL V + QILY + +A VD V A + ++ F L+N+ Sbjct: 79 IQLLLDKPLKGKTRIVHCLLLVGLYQILYTRIPAHAAVDEVVS-ATKSLKSDSFRGLLNA 137 Query: 127 ILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +LRR RE+ ++ + ++ PEW +L+ Y R + ++ P+++ + ++ Sbjct: 138 VLRRFLREQEQILAIVDKHWQTLHPEWLVNKLKQSYANWREIVEANNQKPPMWLRINLQH 197 Query: 185 -DIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 I + L + T ++ LP F +G VQD A L Sbjct: 198 CSIADYQQLLMERGISTSTTNHPQALRLHHASAVNLLPYFEQGWVSVQDLHAQWSALLLE 257 Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 N+ +LD CAAPGGKT AKV ALD+ RL++++ NL R+ A I Sbjct: 258 PENDELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLVRMKQQAIII-CG 316 Query: 297 DAFDYCPK------------------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DA FD +L+DAPCS+TG IRRHPD+ W R DI Sbjct: 317 DATQPEQWLSEIDFNAIGLTFKSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQESDIT 376 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q ++L +KP GI+V++ CSL +++ + +Q L +L PL Sbjct: 377 PLVQLQGQILEALWKKLKPQGILVYATCSLLPEENSQQIQHFLAKH-NDAKLEPLPFTIG 435 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I + +G DGF+ LR+L Sbjct: 436 EEIGHQFVPTEQGG------------------DGFYYAKLRKL 460 >gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT 5369-93] Length = 426 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 125/452 (27%), Positives = 201/452 (44%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L V+ SL+ L +A + + RD L++ I LR LPR++ Sbjct: 1 MNVRAAAASALYQVVDLGHSLSNALP-----AAQQQIRPRDHALLQEICYGVLRQLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K+ L+ V + Q+ ++ + +A V VE A+ K R L+ Sbjct: 56 SISQALMEKPLKGKQRVFHFLILVGLYQLSFMRIPAHAAVGETVEGAQDLKGPR-LRGLI 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ + AG P W + L+ Y ++ + +P+++ Sbjct: 115 NAVLRNYQRDQEGLDAQATSHDAGRYGHPGWLLKLLKESYPEQWQQIVEANNSKAPMWLR 174 Query: 180 L-TVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + L + E P + LPGFAEG VQDA+A + Sbjct: 175 VNHQHHTRAEYQALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + +LD CAAPGGKTA ++V A+D + RL+++R NL RL L A Sbjct: 235 ALTYLAPQAGELILDCCAAPGGKTAHILERTPESQVVAIDCDETRLKRVRENLQRLQLTA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS+TG IRRHPD+ W R DDI A QR++L Sbjct: 295 QVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG ++++ CS+ Q++ V+ L +P LV + A Sbjct: 355 DAMWQQLKPGGSLLYATCSITPQENRLQVKAFLERTP-DARLVGSDPAQP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPGEEA--------MDGFYYAVLSK 424 >gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative [Rhodobacterales bacterium HTCC2654] Length = 420 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 152/434 (35%), Positives = 222/434 (51%), Gaps = 22/434 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ L+ VM L +L L+ D+ + +V R + R D V Sbjct: 8 PRRVALDLMGDVMEHGRLLPEVLPRRLEK-----LAPEDRARTQRLVATAFRVMDRADRV 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + +LR+SVA+I L A + VV+ AVE A+ DK+ A LVN+ Sbjct: 63 LGPHLRKRPT---LRIHNILRLSVAEICELGAAPHGVVNTAVELARADKKTAGMAGLVNA 119 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 ILR+V L +P+W ++ L + YGK+ V A+ A + +DLT K D Sbjct: 120 ILRKVDPAGWAALPT----PRLPKWLRKPLTDDYGKDIVAAMETAFYAGAPLDLTPKGDA 175 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 ET A L +LPTG +R+ + +LPGFAEG WWVQDA+A++P ++ +VL Sbjct: 176 ETLAQALGGTVLPTGSVRVT-GAGQVSTLPGFAEGDWWVQDAAAALPARVLNAQPGEAVL 234 Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 DLCAAPGGKT QL +GA+VTA+D+S+ R+ ++ NL R L A+ + Sbjct: 235 DLCAAPGGKTMQLAAAGAEVTAVDISEHRMARVGENLARCGLSADLV--TMDALEYEGGP 292 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FDA+L+DAPC++TGTIRRHPD+ + +D D Q L+ + + +KPGG +V+ C Sbjct: 293 FDAILLDAPCTATGTIRRHPDLPYAKDGSDFPGLFELQEHLIDRALGMLKPGGRLVYCTC 352 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL + EE V+ L L +A + + EG +R+ PD Sbjct: 353 SLLIDEGEEQVRDALGRHEG---LSVDTAALDRPGIDPDWRTDEGGLRLRPDYWAD---- 405 Query: 427 SSGMDGFFAVALRR 440 GMDGF+ L + Sbjct: 406 KGGMDGFYIACLVK 419 >gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Pseudoalteromonas haloplanktis TAC125] Length = 431 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 209/457 (45%), Gaps = 41/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + N R +++ L V+ K SL L A + L +D+ L++ I LR+L Sbjct: 1 MSNVPNVRALAAETLYNVVDKGASLNQELPF-----ASQGLPPKDKALLQQICYGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P ++ ++ L K+ Q LL V + Q+ ++ V +A + V A + Sbjct: 56 PSLENYCQHLVEEPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALQQLRALGL 114 Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS-P 175 L+N+ILR R++ + + P WF ++++ Y +++ P Sbjct: 115 KGLINAILRSFQRQQLELEEKAKLIPVCLYNHPNWFIKQVKEAYPDSWEDLLAENQQQAP 174 Query: 176 LYIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 +++ + ++ + ++ L A + P + SLP F G VQDA Sbjct: 175 MWLRVNQAQYSTQEYSDMLTANDIEHTLNPDFIDGIKLAKPRDVFSLPEFDTGACSVQDA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287 +A + + ++ ++LD CAAPGGKT ++ + A+V ALD RLE+++ NL R+ Sbjct: 235 AAQLAARFLEPKDDDTILDACAAPGGKTCHILELADAEVLALDSDATRLERVKQNLTRIG 294 Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L A+ + +K FD +L+D PCS+TG IRRHPD+ W R DI A Q Sbjct: 295 LGADLQCGDASQPHTWWDEKQFDRILLDVPCSATGVIRRHPDIKWLRRASDIADLAALQG 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L +KPGG +V++ CS+ Q++++ V K L ++ VE +PL+ + Sbjct: 355 DILDSIWPLLKPGGTLVYATCSVLPQENQQQVAKFLANN-NDVEHIPLHDKDTPTTP--- 410 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +++ P DGF+ L + I Sbjct: 411 ------GLQLLPGE----------SDGFYYAKLVKKI 431 >gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 420 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 114/446 (25%), Positives = 204/446 (45%), Gaps = 44/446 (9%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V+ + SL+ +L + +S +D+ L++ + LR L +++ +++ + Sbjct: 2 AAQAVEQVIEQGQSLSNVLP-----PLQQKVSDKDKALLQELCFGVLRTLSQLEWLINKL 56 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + K+ ++ L+ V Q+L+ + +A + VE A K + L+N +LR+ Sbjct: 57 MSRPMSGKQRTVHYLIMVGFYQLLHTRIPPHAALAETVEGAVSIKRPQ-LKGLINGVLRQ 115 Query: 131 VSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPLYIDLTV-KFD 185 R++ ELL A + PEW RL+ Y ++ + P+++ + Sbjct: 116 FQRQQDELLAEFAQSEARFLHPEWLLNRLKKAYPQQWQDIADANNQRPPMWLRVNRNHHT 175 Query: 186 IETWAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASASIPVQLFGT 239 + W L + + +LPGF EG VQDASA + Sbjct: 176 RDAWLALLEEAGMSGFTHAAYPDAVRLASPALVHALPGFEEGWLTVQDASAQGCMTWLEP 235 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + +LDLCAAPGGKT ++ + V A+DV ++RL ++ NL RL + A + + D Sbjct: 236 KDGEQILDLCAAPGGKTTHILEVAPQASVMAVDVDEQRLSRVYDNLKRLGMKA-QVKQGD 294 Query: 298 ---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D+C FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 295 GRKPADWCGDTRFDRILLDAPCSATGVIRRHPDIKWLRRDRDIKELAQLQSEILDAIWPH 354 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +KPGG +V++ CS+ +++ + + L+ +P + +PE Sbjct: 355 LKPGGTLVYATCSVLPEENSQQIAAFLKRTPDA--------------TLHDTGTPE---- 396 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + + DGFF L + Sbjct: 397 ---HPGLQNLPGAEEGDGFFYAKLIK 419 >gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200] gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200] Length = 444 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 198/461 (42%), Gaps = 42/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K + + L + D+ + +V + +D Sbjct: 1 MKPREIAYKILQEVLSKEAYANISFNKHLRS---QELKEIDRGFTKELVFGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + + K L + + Q+LY+D V YA ++ V AK+ + A Sbjct: 58 FILSFFVKKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 +N++LR REK +++ P+W ERL N Y +E+ A+ + Sbjct: 114 INAVLRNYEREKEKVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226 I V DIE L++ + L ++ + EG+ ++Q Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIVYKKGYYLEEALYIDIKNPERHQLYKEGLIYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + + +VLD+CAAPGGKT + + + +V A D+ RLE ++ N Sbjct: 234 DEASMLVSKTLNPKEGDTVLDVCAAPGGKTTHIAQLMKNSGEVIAFDLHPHRLELIKENC 293 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D+ K D VL D PC+ G IR+ PD+ +I + Sbjct: 294 KRLGITNVKTEVFDSTFVNEKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK GG +V+S C++ K++++ V+ K L+ P +LV + + Sbjct: 354 IEAQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ G+++ TP + +DGFF L+R+ Sbjct: 413 --LSIETDSLGYVQTTP--------LEHEIDGFFISKLKRI 443 >gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis CIP 102891] gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis CIP 102891] Length = 426 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 198/452 (43%), Gaps = 44/452 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGQSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ + L KK L+ V + Q+ ++ + +A V VE K K L+ Sbjct: 56 SIANELMENPLKGKKRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKTLKGP-SLRGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYID 179 N++LR R++ EL + AG P W L Y I +P+++ Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYGHPNWLLNMLRESYPDSWEQLIEANNSKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + P + LPGF G VQDA+A + Sbjct: 175 VNRQHHTRDEYLELLKDENIEFSIHPEAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V N +LD CAAPGGKTA +V A+D +RL+++ NL+RL L A Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q +++ Sbjct: 295 DVICGDARYPQEWWTGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIM 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ V+ L + LV + Sbjct: 355 DAMWGQLKVGGTMVYATCSITPQENVLQVKAFLERT-DNATLVGSDINNP---------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 404 ---GRQILPG--------EEDMDGFYYAVLIK 424 >gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus 129PT] gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT] Length = 462 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 125/463 (26%), Positives = 203/463 (43%), Gaps = 54/463 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R++++ ++ V+ + SL+ LL + +D L++ I R LPR++ + Sbjct: 24 VRVLAAEVILQVLVQGKSLSTLLPE-----QQSAVKPQDFPLLQEICFGICRVLPRLERI 78 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + +L L K + LL V + QILY + +A VD V A + ++ F L+N+ Sbjct: 79 IQLLLDKPLKGKTRIVHCLLLVGLYQILYTRIPAHAAVDEVVS-ATKSLKSDSFRGLLNA 137 Query: 127 ILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +LRR RE+ ++ + ++ PEW +L+ Y R + ++ P+++ + ++ Sbjct: 138 VLRRFLREQEQILAIVDKHWQTLHPEWLVNKLKQSYANWREIVEANNQKPPMWLRINLQH 197 Query: 185 -DIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 I + L + T ++ LP F +G VQD A L Sbjct: 198 CSIADYQQLLMERGISTSTTNHPQALRLHQASAVNLLPYFEQGWVSVQDLHAQWSALLLE 257 Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 NN +LD CAAPGGKT AKV ALD+ RL++++ NL R+ A I Sbjct: 258 PENNELILDACAAPGGKTTHILEQAPNAKVIALDIEPARLQRVKENLVRMKQQAIII-CG 316 Query: 297 DAFDYCPK------------------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DA FD +L+DAPCS+TG IRRHPD+ W R DI Sbjct: 317 DATQPEQWLSEIDFNAIGLTFKSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQESDIT 376 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q ++L +KP GI+V++ CSL +++ + +Q L +L PL Sbjct: 377 PLVQLQGQILEALWKKLKPQGILVYATCSLLPEENSQQIQHFLTKH-NDAKLEPLPFTIG 435 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I + +G DGF+ LR+L Sbjct: 436 EEIGHQFVPTEQGG------------------DGFYYAKLRKL 460 >gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110] gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110] Length = 443 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 34/457 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR ++ L V L+ + +A L D+ IV TLR +ID Sbjct: 2 MKAREIAVQALREVEVNHAKSDTALNHFFSITA---LEPVDRAFTMQIVYGTLREKMKID 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 V+ + ++ +LR+ Q+L+L V +A V+ +VE AK+ K + L Sbjct: 59 HVIKQFYRHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKLKG-QFLGNL 117 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR +S + +IA P W ER + YG I +A Sbjct: 118 VNGVLRNISNNLESVDFSIQGGTFADQIALKYSHPRWLLERWISTYGFLEAQNIMEANNL 177 Query: 175 PLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAE-GVWWVQDA 228 I + E + KL A + L + P+ L F G VQ Sbjct: 178 IPRIAFRINRLKNAPEKFQQKLLAENVTFRKSILPDFVIPDRFFDLEPFLSTGEVSVQSE 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + ++ +L VLD+CAAPGGK+ ++ + ++T+LD+ +LE + Sbjct: 238 AQALACRLLNPQPGQKVLDMCAAPGGKSTYLAEMMANAGQITSLDLYDNKLEDIDRLASA 297 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + I+ DA + ++ FDA+L+DAPC+ TG + R ++ W D+ + Q Sbjct: 298 LGIDIISTIKHDATRFSHEEGFDAILLDAPCTGTGVLSRRAELRWRLSEADLAALSNLQY 357 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +LL KP +V+S CS++ ++++ +++K L + P + + Sbjct: 358 QLLENAAKMAKPDAAIVYSTCSIEPEENQVLIEKFLNAHPEWQLQSAI---EILPDEFHE 414 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +G+I + P +G DG F+ L R Sbjct: 415 VVHDKGYISLLPG--------KNGFDGAFSARLVRKA 443 >gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC 49946] gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC 49946] Length = 429 Score = 256 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D LV+ + LR L Sbjct: 1 MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKCVDDKDAALVQELCYGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ V+ ++ + K+ ++ L+ V + Q+++ + +A + VE A K + Sbjct: 56 PQLEWVISKLMSRPMTGKQRAIHFLIMVGLYQLMFTRIPPHAALAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N +LR+ R++ +L+Q++ + P+W ERL+ + + + + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQDQLMQQMNDGDQQYLHPKWLLERLKRAWPEQWQQIVAANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P ++ LPGF +G VQDAS Sbjct: 175 WLRVNRQYHSRDAWLALLEESGKQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL+ Sbjct: 235 AQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLN 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + D +C LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MQAE-VKLGDGRTPAAWCGDTLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L +K GG ++++ CS+ +++ + + L+ + + Sbjct: 354 QQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHANAALVATGDLTQP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGF+ L + Sbjct: 408 -------GIQVLPQV--------DGGDGFYYAKLVK 428 >gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus 16] gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio parahaemolyticus 16] Length = 426 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGQSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ + L KK L+ V + Q+ ++ + +A V VE K K L+ Sbjct: 56 SIANELMDNPLKGKKRVFHHLILVGIYQLSFMRIPAHAAVAETVEGTKTLKGP-SLRGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R++ L + AG P W L Y + L ++ +P+++ Sbjct: 115 NAVLRSYLRDQEALDEKAVSHNAGKYGHPNWLLNMLRESYPEQWEQLVEANNSKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + E P + LPGF G VQDA+A + Sbjct: 175 VNRQHHTRDEYLELLKDANIEFSIHPEAEDAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V N +LD CAAPGGKTA +V A+D +RL+++ NL+RL L A Sbjct: 235 SVNYLQPQNGELILDCCAAPGGKTAHILEHTEDTEVVAIDCDAKRLDRVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ + FD +L+DAPCS+TG IRRHPD+ W R +DI A Q +++ Sbjct: 295 DVICGDARYPQEWWSGEKFDRILLDAPCSATGVIRRHPDIKWLRRANDIDALAELQSEIM 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ +++ V+ L + + + Sbjct: 355 DAMWGQLKAGGTMVYATCSITPKENVLQVKSFLERTSDA--------------TLVGSDI 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P MDGF+ L + Sbjct: 401 NNPGRQILPG--------EEDMDGFYYAVLVKQA 426 >gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM 16841] gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM 16841] Length = 440 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 106/471 (22%), Positives = 200/471 (42%), Gaps = 60/471 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + +L V ++ ++ ++ L ++++ + + T++++ Sbjct: 1 MTDSVNTRELILGILMEVTKEGSYSHLVIRSVL--DKYQYLEKKERAFITRVSEGTIQYM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +++ + + K ++ +LR+SV Q+ Y+D V D AV + AV+ AKR K Sbjct: 59 IELDYIINRFSKVKVNKMKPVIRNILRMSVYQLKYMDSVPDSAVCNEAVKLAKR-KGFGS 117 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + VN +LR + + +Q ++ +PEW ++ N YG ER +++ Sbjct: 118 LSGFVNGVLRNISRNLSSITYPDGQKDQIQYLSVHYSMPEWIVKQWINDYGMERTVSVLQ 177 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTG-----------GIRLKELPESIVSLP 216 A + + + E +L + T + + + +L Sbjct: 178 AFLQEAPVTIRTNLLKITPEALEMRLKEEGVTTEKIVCADMPELNYAFMISGFDHLNALE 237 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSK 273 F EG+++VQD S+ + + + + ++D+CAAPGGK+ L V A D++ Sbjct: 238 SFREGLFYVQDVSSMMVAETVDPVKDSYIMDVCAAPGGKSVHLAEKLGGTGMVEARDLTD 297 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWT 331 + + +R N+ R L ++MDA D V+ D PCS G +RR D+ + Sbjct: 298 YKTDLIRQNIARHQLSNMRAVQMDATVLDEASIGKADVVIADLPCSGLGVMRRKTDIKYK 357 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + QRK+L +VK GG +++S C++DK ++E+ V L+ P ELV Sbjct: 358 MTLQTEQELVSLQRKMLETVCQYVKAGGTLLYSTCTMDKMENEDNVTWFLKQHP-QFELV 416 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +I P DGFF L++ Sbjct: 417 -------------------KMQQIFPQKTYG--------DGFFLAKLQKKA 440 >gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 447 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 196/460 (42%), Gaps = 39/460 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + +L ++ K+ +L+ ++ R + D+ ++ IV T+ +D Sbjct: 1 MNQRNTAFKILYDIIIKKGYSNIVLNKYLNNNELRDI---DKSFIKEIVFGTIERKQTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + + +L + + QI+Y+D V YA + AV AK H +K Sbjct: 58 QIIDHCSSKGSKKIDNKILIILEMGLYQIIYMDKVPQYAAISEAVNLAKEYAG-IHASKF 116 Query: 124 VNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN++LR +R +++ +A PEW +RL N Y K I + Sbjct: 117 VNAVLRNYARNSAKIDILRSDKNVVEYLAFKYSYPEWIVKRLLNNYDKAATEDILKSLNE 176 Query: 175 PLYIDLTVKF------DIETWA--HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 I + + D E LN ++I + G +Q Sbjct: 177 KPQISIRLNTLKIGSKDFEKILIDKGLNFKKGSYVDDAYYIDLKNIAGDEIYKNGFMQIQ 236 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D A I ++ + ++D+C+APGGKT + + + KV A D+ + +++ +R N Sbjct: 237 DEGAMIISKVLSPNPDDLIIDVCSAPGGKTTHISQLMNNKGKVIAFDIHEHKIDLIRMNC 296 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D D+ K D VL D PC+ G IR+ PD+ +DI K Sbjct: 297 KRLGVNNVDAYVFDSTKINEKYIEKADKVLADVPCTGIGIIRKKPDIKLKNYTDEDIKKL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L +VK GG +++S C++ ++++ ++ + L + E+ + Sbjct: 357 NNIQYNILSSSSKYVKKGGYILYSTCTIGREENMNIIDRFLGENKN-FEISDIRPLLPDK 415 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +A + +G++++ P++ + DGFF L+R Sbjct: 416 --LASQVDNKGYLQLLPNI--------NNTDGFFICKLKR 445 >gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01] gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01] Length = 426 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ +SL KK L+ V + Q+ ++ + +A V VE A + + L+ Sbjct: 56 SIANELMENSLKGKKRVFHHLILVGIYQLSFMRIPSHAAVAETVE-ATKTLRGPSLSGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R++ EL + AG P W + L+ Y + L ++ +P+++ Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYSHPSWILKMLQESYPDQWEQLVEANNNKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + P + LPGF G VQDA+A + Sbjct: 175 VNRQHHTRDEYVELLKNENIEYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V + +LD CAAPGGKTA +V A+D +RL+++ NL+RL L A Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ FD +L+DAPCS+TG IRRHPD+ W R DI A Q ++L Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ V+ L + ++ + + Sbjct: 355 DAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERT--------------ENATLVGSDI 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +I P MDGF+ L + Sbjct: 401 EKPGRQILPG--------EEDMDGFYYAVLVKQA 426 >gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731] gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731] Length = 446 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 105/465 (22%), Positives = 187/465 (40%), Gaps = 46/465 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK + N R + +L + + LD LS D+ L +V T++ Sbjct: 1 MKGTAKNPREAALLILEQIFLRGAYANLALDQGLR---GATLSPLDRKLTTELVYGTVKT 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 + +D L V+ L + + +LR+ Q+LYLD + A + +V+ AK+ + Sbjct: 58 MGTLDWYLSRVVNRPLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWV-HE 116 Query: 119 HFAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAIS 169 KLVN LR+++R + + A PEW R + YG E + + Sbjct: 117 GAGKLVNGALRQLARTRDQWKFPQGPDHELERIALEYYHPEWLVRRWKFRYGLEEAVKLC 176 Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAE 220 + V E KL + L + S+ L Sbjct: 177 AFDNARPAFSFRVNTLRDTREGLQEKLAEKGIRTRPSQWSPDGLLCDSLPSLDDLVEGFG 236 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 ++QD S+ + + VLDLC+APGGKT + ++ ALD+ +L+ Sbjct: 237 PDIYIQDESSMLDAAVLDPQPGERVLDLCSAPGGKTTHLAQKMQDQGEILALDLYDHKLD 296 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 +R N RL ++ + D + P + VLVDAPCS G + R + WT++ Sbjct: 297 LVRENARRLGIHCIRTEKQDGTVFVPEWENTAHRVLVDAPCSGLGVLNRRAEARWTKEER 356 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + + Q+K+L G +V PGG +++S C+L++ ++ V + L + P + Sbjct: 357 SLSQFPPLQKKILANGARYVMPGGRLLYSTCTLEQDENTRVRKWFLENHPEFAPAAFPHP 416 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ ++I P G++GF+ + Sbjct: 417 LTGEPVEE---------LQILPQ--------RDGINGFYLCLFEK 444 >gi|307296989|ref|ZP_07576805.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1] gi|306877515|gb|EFN08743.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1] Length = 429 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 152/443 (34%), Positives = 217/443 (48%), Gaps = 27/443 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR + LL V+R+ L L A + L D+ LV AI TLR LP Sbjct: 11 PGLPARRAALRLLDAVLRRGDPLELAL-----HGAGQGLPPADRALVHAIAAETLRHLPD 65 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA++D LP + +LR+++ Q + L A +A + A+ D R Sbjct: 66 LDALIDSATRQPLP-HDAKARMVLRIALIQTIALGTAPHAAIATALPLV--DGGPRKLVH 122 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 V L R + + R + +G LA + A +DL++ Sbjct: 123 GVFGTLTRANPTLPSPPTLPPEV-------AARWGSQWGAAMPLAAATAYALRPPVDLSL 175 Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + ET WA +L G IRL E +I LPGF EG WWVQD +AS+P +L G Sbjct: 176 RDASETAHWAEQLGGRSFAPGHIRLPEGA-NIPDLPGFGEGAWWVQDIAASVPARLLGAG 234 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCAAPGGKT QL +G +VTA+D SK+RLE+L NL R L AE + + D Sbjct: 235 EGRRVLDLCAAPGGKTMQLAAAGWRVTAVDQSKKRLERLGENLGRTGLSAEVV-QADLRA 293 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P DA+L+DAPC++TG RRHPDVL I + A Q +LL + ++ PGG Sbjct: 294 WAPDGPADAILLDAPCTATGIYRRHPDVLHRIGPRQIAELAELQAELLDRAAQWLTPGGT 353 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 ++++ CSL++ + EE V + L + P L A + +A + +GW+R P+ L Sbjct: 354 LIYATCSLEQAEGEEQVARFLSAHPDFAPL----PANAAELPEGIAPTAQGWVRTLPETL 409 Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443 G DGFF L R + Sbjct: 410 AN----EGGTDGFFVARLVRSTK 428 >gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Alteromonadales bacterium TW-7] gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Alteromonadales bacterium TW-7] Length = 431 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 117/457 (25%), Positives = 204/457 (44%), Gaps = 41/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R +++ L V+ K SL L A + L +D+ L++ I LR+L Sbjct: 1 MNKVQNVRALAAETLYNVVDKGASLNQELPF-----ASQGLPPKDKALLQQICYGVLRYL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P ++ ++ S L K+ Q LL V + Q+ ++ V +A + V A Sbjct: 56 PSLENYCQHLVESPLKGKRRIFQFLLYVGIYQLQHMRVPPHAAISETVN-ALGQMRALGL 114 Query: 121 AKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISP 175 L+N+ILR R++ + + P WF ++++ Y + + +P Sbjct: 115 KGLINAILRSFQRQQAELEEKAKLIPVCLYNHPNWFIKQVKEAYPENWEAILEENQQQAP 174 Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 +++ + +F + ++ L A + P + SLP F G VQDA Sbjct: 175 MWLRVNQSQFSTQEYSDMLTANDIEHTLNPNFIDGIKLAKPRDVFSLPEFDTGACSVQDA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287 +A + + ++ +LD CAAPGGKT ++ + A V ALD RLE+++ NL R+ Sbjct: 235 AAQLAARFLEPKDDDVILDACAAPGGKTCHILELADADVLALDSDATRLERVKQNLTRIG 294 Query: 288 LYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L A+ + + FD +L+D PCS+TG IRRHPD+ W R DI A Q Sbjct: 295 LGADLQCGDASQPHTWWDDEQFDRILLDVPCSATGVIRRHPDIKWLRRASDIEDLAALQG 354 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L +KPGG +V++ CS+ +++++ + K L ++ VE +PL+ + Sbjct: 355 DILNSIWPLLKPGGTLVYATCSVLPKENQQQIAKFLANN-DDVEHIPLHDKDTLTTP--- 410 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +++ P DGF+ + + Sbjct: 411 ------GLQLLPGE----------SDGFYYAKMVKKA 431 >gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 451 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 125/460 (27%), Positives = 202/460 (43%), Gaps = 40/460 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L V R L L A + +RD+ L I TLR +D +L Sbjct: 6 RRRAYQALIRVERDGAFLNAALQEAL---AGAGVDERDRALATEIAYGTLRRQITLDRLL 62 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++ + + ++ +LR+ Q+ +L V YA + AVE AKR + A LVN+ Sbjct: 63 SPLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR--PQAAALVNA 120 Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +LRR + + R + + +P W ERL +G +RVLA + Sbjct: 121 VLRRYAERAQDWEDLLNKAVAGAKDVERWSVMYSVPAWIVERLVADHGADRVLAALASMN 180 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWW 224 P + L E +L A L + + L + +G Sbjct: 181 EPAPMSLRANRLRGSREEAIARLGAEGAVARPAALAEDGLRVQGQVDVTRLQAYRDGYVT 240 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD A + L + V+DLCAAPGGKT L + ++ A DV+ ++ +R Sbjct: 241 IQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKTTHLAELMGDRGEIDAYDVTVAKVRAIRQ 300 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L + D P+ L+DA LVDAPC+ G +RR PD+ + R +D+ + A Sbjct: 301 QAERLGLQSVHPRLGDGRQVTPEGLYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAQLA 360 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR LL + + V+ GG VV+S C+L K+++E VV+ V + V + + ++ Sbjct: 361 QLQRALLRRACAIVRSGGCVVYSTCTLLKEENESVVRDVASDPSVGVRIEDIGGDLAPTL 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ G++ + PD DGFF LRR+ Sbjct: 421 AVSVGERSPGFL-LWPDW--------HETDGFFMARLRRI 451 >gi|83594989|ref|YP_428741.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] gi|83577903|gb|ABC24454.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] Length = 438 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 144/439 (32%), Positives = 219/439 (49%), Gaps = 18/439 (4%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LLS V+ L + D L RD+ R + TLR + R++ V+ L Sbjct: 13 LDLLSAVLDHGRPLDDVFDAATRK-----LEPRDRAFARLLAATTLRRMGRLEKVIKTFL 67 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 LPR+ + +LR+ AQ+L+LD +A V +V+ A R + +A L+N++LR+V Sbjct: 68 DRPLPRRAVGAKHILRLGAAQMLFLDTPPHAAVATSVDVA-RVRRLAPYAGLINAVLRKV 126 Query: 132 SREKIEL-LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + ++ +P W + YG E +++AC +DLT + Sbjct: 127 ADHGAARLAGFDDPLADLPRWLGQSWIAAYGAETAARLAEACGREAPLDLTPRDGDGGAL 186 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-GTLNNLSVLDLC 249 +L + GG ++ L GF EG WWVQDA+A++PV L L V+D C Sbjct: 187 AELVGGLALPGGSVRLPTATAVRELAGFTEGQWWVQDAAAALPVLLAGVPLKGARVVDFC 246 Query: 250 AAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMD--AFDYCPKKL 306 AAPGGKT QL +GA+V A+D S RL +LR NL+R L A +++E D F + Sbjct: 247 AAPGGKTLQLAAAGAQVWAVDRSATRLARLRENLERTGLGDAVNVVEGDALTFTLTDGQQ 306 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 D VLVDAPC++TGT RRHPD W + D A Q LL + V+PGG++V+ C Sbjct: 307 ADVVLVDAPCTATGTFRRHPDAPWLKRPGDAAALAALQDSLLDAAVRLVRPGGVIVYCVC 366 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL +++ ++ +L SP + P+ + D ++ EG +R+ P L+ + Sbjct: 367 SLQPEEAAPRIEALLARSP-EISRKPITAGEGGVSD--EMITAEGDVRLFPFHLDAV--- 420 Query: 427 SSGMDGFFAVALRRLIQPK 445 G+DGFF L R P+ Sbjct: 421 -GGLDGFFIARLVRGDAPR 438 >gi|197302406|ref|ZP_03167462.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC 29176] gi|197298527|gb|EDY33071.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC 29176] Length = 458 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 111/468 (23%), Positives = 194/468 (41%), Gaps = 42/468 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + +L + +L S ++ L ++++ + + TL L Sbjct: 1 MGRQVNEREIVLAVLMEITENGAYSHKILGEVL--SKYQYLEKKERAFITRVTEGTLEHL 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +LD + + K ++ +LR V Q+ Y+D V D+AV AV+ A R K Sbjct: 59 IEIDYILDQFSKVKVKKMKPVIRNILRSGVYQLKYMDSVPDHAVCSEAVKLAVR-KGFSG 117 Query: 120 FAKLVNSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR V+R L + IP W E YG+E ++ + Sbjct: 118 LKGYVNGVLRSVARGLDTLDYPQEGIEALSIQYSIPTWILRLWEKSYGEEVTRTMAADFL 177 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWW 224 + + + E +L + + + SL F +G + Sbjct: 178 KERPVTIRCCQNKVTPEQLKKELEQEGVTVQEHPYLPYAFFISGYDYLESLDCFWKGWFT 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKR 274 VQD S+ + +L ++D+CAAPGGK+ + +V A D+++ Sbjct: 238 VQDVSSMLVAELAAPEAGNKIVDICAAPGGKSLHIAEKLWITDRNEAKKGEVEARDLTEY 297 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 ++ + N+ R+ L + DA K+ D VL D PCS G + PD+ + Sbjct: 298 KVGLIEENIARMELENIHAVCRDATVPDEAWKEKADIVLADLPCSGLGVFGKKPDLKYRV 357 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 +D+ + A QRK+L + VK GG +++S C++D ++EE V L+ P L Sbjct: 358 KEEDLKELAGLQRKILENAQAMVKKGGTLLYSTCTIDPMENEENVHWFLKKYP-QFSLNS 416 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +A ++ EG I++ P + DGFF L++ Sbjct: 417 IREKLCPQ--LAESVEEEGCIQLLPGI--------HCSDGFFIARLKK 454 >gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 451 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 125/456 (27%), Positives = 211/456 (46%), Gaps = 36/456 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + ++AR + +L V+ + SL+ LL A ++ +D L++ I R LP Sbjct: 12 TTALSARTAAVQILFQVLEQGKSLSSLLP-----DAQVVIKAQDLPLLQEICFGVCRVLP 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R++ ++ ++ L KK + LL V + QILY + YA VD V AK + + F Sbjct: 67 RLEQIIAQLVDKPLRGKKRIVHCLLLVGLYQILYTRIPVYAAVDEIVNTAKNLQL-QSFQ 125 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LRR RE+ + ++ P+W +L+ Y R + ++ P+++ Sbjct: 126 GLVNAVLRRFLREQESMLAKVDKHWQTLHPDWLVNKLKKVYPNWREIIEANNQKPPMWLR 185 Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233 + + +ET+ L A + + S+ LP FAEG VQD A Sbjct: 186 VNTQKNSLETYRTLLTAQQMDAQITSHPQALGLTQPTSVQYLPLFAEGGVTVQDLHAQWA 245 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L N +LD CAAPGGKT ++ A+V ALDV + RL++++ NL R+ A Sbjct: 246 ALLLQPQNGELILDACAAPGGKTTHILELAPQAEVVALDVEENRLQRVKENLARMQQQAT 305 Query: 292 DIIEMDAFDYCPKKL-------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A FD +L+DAPCS+TG IRRHPD+ W R DI Q Sbjct: 306 IVCGDAANPRAWLTKLGKSAVRFDRILLDAPCSATGVIRRHPDIKWLRKEADIEPLVELQ 365 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++KP G+++++ CS+ +++ +++ L+ +P + +A Sbjct: 366 EQILQALWPYLKPSGVLLYATCSVLAEENARQIERFLQHTPDAQ----PTALNLPEEVLA 421 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S G+ + + G DGF+ L + Sbjct: 422 RNQSAVGF---------QFIPQTDGGDGFYYAKLVK 448 >gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus 8] gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus 8] Length = 429 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 116/455 (25%), Positives = 198/455 (43%), Gaps = 50/455 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + LL+ + LLD S F +RD+ + A+ L +DA Sbjct: 3 NTRRFTVKLLTRLDENSSYSNILLDEALARSDF---DKRDKKFISALFYGVLERRLTLDA 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + + + +L+ +LR + Q+ Y+D V D A VD +VE AK+ N A V Sbjct: 60 MIAELSKNPKNKLNNTLRNILRSGLYQLKYMDSVPDNAAVDESVEMAKK-LRNPASAGFV 118 Query: 125 NSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N +LR + + + R++ PEW + YGKE+ L++ ++ I Sbjct: 119 NGLLREFIRRDKALPKSDTEIGRLSLEYSCPEWLVGKWLAEYGKEKCLSLLESSIGRAPA 178 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDAS 229 + + +E L A + + + ++ + EG + VQD + Sbjct: 179 TVRINHLIGSVEETLDMLAAEGVTFERSSISDYTVHLANAGAVEKTKAYREGRFHVQDIA 238 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + +VLDLCAAPGGKT ++ + +V A D+ R++ ++ DRL Sbjct: 239 SQLCCKALDPQAGDTVLDLCAAPGGKTFTIAEMMGNEGRVLAFDLHPNRVKLIKSGADRL 298 Query: 287 HLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L +A + K D VLVDAPCS G IRR P++ + +D D + Q Sbjct: 299 GLSCVTAEVNNAKVFNDKLPPADRVLVDAPCSGLGVIRRKPEIKY-KDPADFERLPAVQY 357 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +VK GG++V+S C++ + ++++VV+K L + D Sbjct: 358 EILDTASKYVKAGGLMVYSTCTVSRAENDDVVKKFLAAHEDF---------EPDGEDFMQ 408 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++PE + G DGFF LRR Sbjct: 409 TITPEMY----------------GSDGFFTARLRR 427 >gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei ATCC 43531] gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei ATCC 43531] Length = 449 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 106/455 (23%), Positives = 189/455 (41%), Gaps = 42/455 (9%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L + + L E +++RD+ + +V T++ +D ++ Sbjct: 14 REQAMQVLLRIHSEGAYANVALAEELR---IAQMTERDRRFLTELVYGTVKAGETLDYMI 70 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L + + +++LLR+ QI ++D + AV AVE AK+ + A VN Sbjct: 71 RRYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKH-GGKGAASFVNG 128 Query: 127 I-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + +R + + + +A P W ER YG ER + + Sbjct: 129 VLRTALREPKRAALPQGHDARSLALRMQHPVWMVERWLRDYGSERTETLCRCDNESAPLT 188 Query: 180 LT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASA 230 L ++ +L A + L ++ +L EG+ VQD S+ Sbjct: 189 LRTNTLRTSRTALIERLTAAGVRAEASLRVPESVLLHAHGALDALAPLREGLAQVQDESS 248 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + G ++V+D CAAPGGKT + + ++ A D+ + +L ++ N +RL Sbjct: 249 MLVAHVLGAEPGMTVIDACAAPGGKTTHIAQRMENRGRIWAFDIHEEKLRRIMRNAERLG 308 Query: 288 LYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + +DA + D VLVDAPCS G +RR PD W + D+ Q Sbjct: 309 ISIIETQLLDAREVGAHYGVCADRVLVDAPCSGLGVLRRKPDARWRKTPSDVKTLPPLQL 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L VK GG++V+S C++++ ++ VV+ LR V + Sbjct: 369 AILASAARTVKQGGVLVYSTCTMERSENTAVVEAFLRGHEDFV-------LEETGAFLPE 421 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E ++I P + G DGFF +RR Sbjct: 422 QKTAERMVQIMP--------ETGGPDGFFIARMRR 448 >gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri VA-6] Length = 420 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 46/448 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V+ + SL+ +L + +S +D+ L++ + LR L ++D +++ + Sbjct: 2 AAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKL 56 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + K+ ++ L+ V + Q+LY + +A + VE A K + L+N +LR+ Sbjct: 57 MARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKGLINGVLRQ 115 Query: 131 VSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KF 184 R + E + P W +RL+ Y E+ +I++A + L + Sbjct: 116 FQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPPMWLRINRTHH 174 Query: 185 DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 ++W L+ + P + +LPGF +G VQDASA + Sbjct: 175 SRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLA 234 Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL + A + + Sbjct: 235 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT-VKQG 293 Query: 297 DAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 294 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWP 353 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V++ CS+ +++ ++ L+ + ++ +PE Sbjct: 354 HLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCETGTPE--- 396 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + DGFF L + Sbjct: 397 ----QPGKQNQPGAEEGDGFFYAKLIKK 420 >gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas artemidis F0399] gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas artemidis F0399] Length = 451 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 112/458 (24%), Positives = 189/458 (41%), Gaps = 41/458 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V R L L+ RD+ + +V T++ +D Sbjct: 13 PVRELAMQVLMEVHRDGAYANVALVRAMRA---AQLTDRDRRFLTELVYGTVKAGDTLDD 69 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L R K ++++LR+ + QI ++D V A + AVE AK+ R V Sbjct: 70 MIAKYLRDGKARIKPQIREILRLGIYQIFFMDKVPASAACNTAVELAKKH-GKRGADSFV 128 Query: 125 NSI-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N++ R + + +A P W R YG ER + Sbjct: 129 NAVLRAAVREPERAAIPAGRNARLLALREQHPFWMANRWVRLYGYERAEELCRCNNGSAP 188 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDA 228 + L V D E KL A + + +L EG+ VQD Sbjct: 189 LALRVNTLRIDREGLLKKLAAAGAQARPSATVPDGIVVTSHGMLDALAPLREGLCQVQDE 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + G ++V+D CAAPGGKT + + K+ A DV + ++ ++ N R Sbjct: 249 SSMLVAHVLGAAPGMTVIDACAAPGGKTTHIAQRMENRGKIYAFDVYEGKIARIENNARR 308 Query: 286 LHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + +DA + D VL+DAPCS G +RR PD W R +++ Sbjct: 309 LGIDIIEPRLLDAREIGAHYAGTADRVLIDAPCSGFGVLRRKPDARWRRKPEELGALPKL 368 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L + V+PGG +V+S C+++ ++E VVQ+ L P V + Sbjct: 369 QQEILAGAAAAVRPGGALVYSTCTMETAENEGVVQRFLELHPEFV-------LERAGAFL 421 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + ++I P G DGFF ++RL Sbjct: 422 PVQQTEDAMVQIFP--------TEDGGDGFFIARMKRL 451 >gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2] gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira crunogena XCL-2] Length = 436 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 130/455 (28%), Positives = 210/455 (46%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N+R ++ + V+ SL+ L + +R++ + +V TLR+ R++ Sbjct: 3 VNSRYIALKICLTVIEHGRSLSQSLAEGLAQFS----DRRERAFTQNLVLGTLRWQERLE 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L L K + QL+ + + QILY+D ++A V V K K+ L+ Sbjct: 59 AIRSHLLKKPLKAKDEDVNQLILLGLYQILYMDTPEHAAVSETVNLTKSLKKP-WARGLI 117 Query: 125 NSILRRVSREKIELL----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR R+K + ++ A P+WF + + N Y + I A P + L Sbjct: 118 NGVLRTFLRDKDSICEEVDKKPAYRYSHPQWFTKTIRNAYP-DHWEQILSANNEPAPLTL 176 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231 V E + L+ + + + I LP + EG + VQDA+A Sbjct: 177 RVNPLYQTREAFLALLSDQAVEADIHPKAPQGIVLKNSLDITQLPTYDEGGFSVQDAAAQ 236 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 L N +LD CAAPGGKT L + AKV AL+ R+E+L NL RL L Sbjct: 237 QAAYLLAPQPNEFILDACAAPGGKTTHLLELSDNQAKVFALEKEPERIERLSENLYRLAL 296 Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 AE I D + P+ FD +L+DAPCS+TG IRRHPD+ W R +DI Q Sbjct: 297 TAE-IEVGDASQPDQWWPEIQFDKILLDAPCSATGIIRRHPDIKWHRTPEDITVLTQLQA 355 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L +KPGG ++++ CS+ Q++ + + + L+ +P E +P+ + + +ID Sbjct: 356 AILQAIWPRLKPGGKLLYATCSVLPQENRDQISQFLQQTPDAKE-IPIGADWGITIDAP- 413 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P GMDGF+ + + Sbjct: 414 ------GRQILPG--------QDGMDGFYYCLIEK 434 >gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri 2747-71] Length = 420 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 46/448 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V+ + SL+ +L + +S +D+ L++ + LR L ++D +++ + Sbjct: 2 AAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKL 56 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + K+ ++ L+ V + Q+LY + +A + VE A K + L+N +LR+ Sbjct: 57 MARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-LKGLINGVLRQ 115 Query: 131 VSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KF 184 R + E + P W +RL+ Y E+ +I++A + L + Sbjct: 116 FQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYP-EQWQSIAEANNQRPPMWLRINRTHH 174 Query: 185 DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 ++W L+ + P + +LPGF +G VQDASA + Sbjct: 175 SRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLA 234 Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL + A + + Sbjct: 235 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRIYDNLKRLGMKAT-VKQG 293 Query: 297 DAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 294 DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWP 353 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V++ CS+ +++ ++ L+ + ++ +PE Sbjct: 354 HLKSGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCETGTPE--- 396 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + DGFF L + Sbjct: 397 ----QPGKQNQPGAEEGDGFFYAKLIKK 420 >gi|163734256|ref|ZP_02141696.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149] gi|161392264|gb|EDQ16593.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149] Length = 423 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 138/441 (31%), Positives = 212/441 (48%), Gaps = 21/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G+ AR + +LL ++ + L+ L D+ + TLR Sbjct: 1 MADTGLPARRSAVYLLDQILGEGR----LMSELLTAGTLDKLEPEDRARAARLAQDTLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L P +++ LRV ++ A + VV+ VE R K H Sbjct: 57 LERADRILQKHLSKYPP---LTVRNALRVGAFELC-TGTAAHGVVNAMVELVSRHKHYSH 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L N++LR+V+ + + +P+W + L +G + + + A + +D Sbjct: 113 LKGLTNAVLRKVAADGPTAWDAL-RPPRLPKWLRGPLVEAWGADAMARMDIAHFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT K D A +LPTG +R+ + ++PGF++G WWVQDA+A++PV++ Sbjct: 172 LTAKSDAPAVAALTGGTLLPTGSVRIANA-GQVSAMPGFSDGTWWVQDAAAALPVRILAP 230 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLDLCAAPGGKT QL +GA VTA+D S R+ ++ NL R L A+ +++ Sbjct: 231 QPGETVLDLCAAPGGKTMQLAAAGAMVTAVDDSSVRMGRVEENLARTGLKAKTLVQDAQI 290 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCS+TGTIRRHPD+ +D + Q L+ VKPGG Sbjct: 291 TT---GTFDAVLLDAPCSATGTIRRHPDLPHAKDGSEFGDLIAMQADLIDHAWGCVKPGG 347 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E + L ++ +D A + EG +R+ PD Sbjct: 348 RLVFCTCSLLPDEGEVQIDDALERHADM--RTDADALEIPGVDPAWR-TSEGGLRLRPDY 404 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 405 WSDL----GGMDGFYIAVLRK 421 >gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602] gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602] Length = 429 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 134/457 (29%), Positives = 218/457 (47%), Gaps = 46/457 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ K +SL+ +L + +S++D+ L++ + TLR L Sbjct: 1 MKTAYNLRSIAAQAISQVLDKGLSLSTVLPGL-----QKNVSEKDRGLLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ L ++ L K+ +L LL V + Q+++ + +AV+ V+ A K + Sbjct: 56 PQLEWCLQQLMAKPLTGKQRTLHYLLMVGLYQLIHTRIPAHAVLAETVDGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ ELLQR+A + P W RL+ Y + +I DA Sbjct: 115 KGLINGVLRQFQRQQEELLQRMANNDSRHLHPSWLLNRLKKAYPTDW-ESIVDANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDA 228 + L V + + H LN V + P + LPGF EG VQDA Sbjct: 174 MWLRVNRQHHTRDEYLHLLNEVHIEAVPHPEYRDALRLNTPCQVNLLPGFTEGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRL 286 SA V L N +LDLC APGGKT ++ A V A+DV ++RL+++ NL RL Sbjct: 234 SAQGSVDLLDPQNGELILDLCCAPGGKTTHILEAAPKAHVLAVDVDEQRLKRVHENLQRL 293 Query: 287 HLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L AE + + D + ++FD +L+DAPCS+TG IRRHPD+ W R DIV+ A Sbjct: 294 KLSAE-VKQGDGREPQMWAGDRIFDRILLDAPCSATGVIRRHPDIKWLRRDSDIVELASL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L +K GI+V++ CS+ ++ + + L S + Sbjct: 353 QKEILDAVWPRLKSKGIMVYATCSILPDENCQQIASFLESHQDATLVE------------ 400 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P DGF+ L + Sbjct: 401 -TGTMEKPGRQNLPH--------PEDGDGFYYAKLVK 428 >gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222] gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus LGP32] gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222] gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus LGP32] Length = 426 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 120/454 (26%), Positives = 205/454 (45%), Gaps = 44/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLFQVVDKGHSLSHALP-----AAQKTIRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ +SL KK L+ V + Q+ ++ + +A V VE A + + L+ Sbjct: 56 SIANELMENSLKGKKRVFHHLILVGIYQLSFMRIPSHAAVAETVE-ATKTLRGPSLSGLI 114 Query: 125 NSILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R++ EL + AG P W + L+ Y + L ++ +P+++ Sbjct: 115 NAVLRSYLRDQEELDEKAVSHNAGKYSHPSWILKMLQESYPDQWEQLVEANNSKAPMWLR 174 Query: 180 LT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + L + P + LPGF G VQDA+A + Sbjct: 175 VNRQHHTRDEYVELLKNENIEYTLHPEAADAIKLASPCDVTLLPGFDRGWVSVQDAAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V + +LD CAAPGGKTA +V A+D +RL+++ NL+RL L A Sbjct: 235 SVDFLTPKDGELILDCCAAPGGKTAHILEHTQDTEVVAIDSDIKRLDRVYDNLERLQLRA 294 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ FD +L+DAPCS+TG IRRHPD+ W R DI A Q ++L Sbjct: 295 DVICGDARYPEEWWTGSQFDRILLDAPCSATGVIRRHPDIKWLRRASDIDALAELQSEIL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ Q++ V+ L + ++ + + Sbjct: 355 DAMWRQLKEGGTMVYATCSITPQENVLQVKAFLERT--------------ENATLVGSDI 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +I P MDGF+ L + Sbjct: 401 EKPGRQILPG--------EEDMDGFYYAVLVKQA 426 >gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 444 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 194/461 (42%), Gaps = 42/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K + + L + D+ + +V + +D Sbjct: 1 MKPREIAYKILQEVLSKEAYANITFNKYLK---GQELKEIDRGFTKELVFGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + K L + + Q+LY+D V YA ++ V AK + A Sbjct: 58 FILSFFVKKPADEKSKIF---LEMGLYQLLYMDKVPSYAAINETVNIAKNVLGIKR-ANF 113 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 +N++LR REK +++ P+W ERL N Y +E+ A+ + Sbjct: 114 INAVLRSYEREKEKVIFPDKERDLRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226 I V DIE L + + L ++ S + EG+ ++Q Sbjct: 174 KPKICYRVNTLKIDIEDLKKLLVSRGIVYKKGYYLEEALYIDIKNPESHQLYKEGLIYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + ++ +VLD+CAAPGGKT + + + V A D+ RLE ++ N Sbjct: 234 DEASMLVSKILNPNEGETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENC 293 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D+ K D VL D PC+ G IR+ PD+ +I + Sbjct: 294 KRLGITNVKAEAFDSTFVNDKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK G +V+S C++ +++ V+ K L+ P LV + + Sbjct: 354 VETQYKILDSSSKYVKKDGFLVYSTCTIGVEENHNVIMKFLKEHPN-FRLVDIKAEMPSG 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ A G+I+ TP + G+DGFF L+R+ Sbjct: 413 LNIETA--SLGYIQTTP--------LEHGIDGFFISKLKRI 443 >gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514] gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561] gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513] gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514] gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561] gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513] Length = 444 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 199/461 (43%), Gaps = 42/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K + + L + D+ + +V + +D Sbjct: 1 MKPREIAYKILQEVLSKEAYANISFNKHLK---GQELKEIDRGFTKELVFGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + + K L + + Q+LY+D V YA ++ V AK+ + A Sbjct: 58 FILSFFVNKAPDLKTMIF---LEMGLYQLLYMDKVPSYAAINETVNIAKKVLGIKR-ANF 113 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 +N++LR REK ++ P+W ERL N Y +E+ A+ + Sbjct: 114 INAVLRNYDREKERVIFPDKERDLKQYLKVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226 I V DIE L++ + L ++ S + EG ++Q Sbjct: 174 RPEICYRVNTLKIDIEDLKRLLDSDGIAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + ++ +V+D+CAAPGGKT + + + KV A D+ RLE ++ N Sbjct: 234 DEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPHRLELIKENC 293 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D+ K D VL D PC+ G IR+ PD+ +I + Sbjct: 294 KRLGITNVKTEAFDSTFVNKKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTRKEISEL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK GG +V+S C++ K++++ V+ K L+ P +LV + + Sbjct: 354 IETQYKILDSSSKYVKKGGFLVYSTCTIGKEENQNVIMKFLKEHP-DFKLVDIKAEMPSG 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ A G+++ TP + +DGFF LRR+ Sbjct: 413 LNIETA--SLGYVQTTP--------LEHEIDGFFISKLRRI 443 >gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6] gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6] Length = 437 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 115/463 (24%), Positives = 204/463 (44%), Gaps = 52/463 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R ++ L + ++ L+ + L RD+ + TL + Sbjct: 1 MTDRVNVRELAVETLLAIQKENRQSHLLIRDVL--DQYAWLPDRDRAFYVRLTEGTLEYR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D +++ + R K ++++LRV+V Q+ Y+D V D A V+ AV A R + Sbjct: 59 LQLDYIINSYSKTRTTRMKPMIREILRVAVYQLRYMDSVPDSAAVNEAVRLAVR-RGFSG 117 Query: 120 FAKLVNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR ++RE ++ + + +P + ++ + YG +R I A Sbjct: 118 LKGFVNGVLRSIAREPEKVKFPERSSGTSYLEVVYSMPVYLGQKWIDAYGMDRAEQICRA 177 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWV 225 + +I + V+ D E +L + L E + L FAEG V Sbjct: 178 FLEKNHITVRVRKDEEAVLGELKEAGVSVMKNPLTEHAYDLEGGGDLSRLNCFAEGKILV 237 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCN 282 QDAS+ + V+ G VLDLCAAPGGK+ L V + D+++ + E++R N Sbjct: 238 QDASSQLSVRAAGIRAGDRVLDLCAAPGGKSMLASDLTGPDGLVISRDLTEYKTERIREN 297 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 ++RL L ++ E DA + + D V+ D PCS G I + PD+ + D ++ Sbjct: 298 VERLGLSNVEVQEHDATVPDDRSVGEMDVVIADVPCSGYGVIGKKPDIKYRADAENQKNL 357 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QRK+L +++VKPGG+++FS C++ ++++E+ V +L +E Sbjct: 358 VDLQRKILSNAMTYVKPGGVLLFSTCTIGREENEDNVDWILGRGGFSLEES--------- 408 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ P DGFF R+ + Sbjct: 409 ------------RQLLPG--------EDPCDGFFYARFRKKTE 431 >gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON] gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON] Length = 447 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 105/459 (22%), Positives = 194/459 (42%), Gaps = 39/459 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + LL + K+ + + D++ L D+ + +V R+ +D Sbjct: 4 KARNAALKLLRDIDIKKAYINLEIKPALKDNSLSTL---DRAFITDMVYGVTRYRLTLDW 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + ++ +LR+ + QILY+D V D+A D +VE AK+ + A V Sbjct: 61 LIKRYSRGG--KASPWIRNILRMGMYQILYMDRVPDFAACDSSVELAKKYAG-QREAGYV 117 Query: 125 NSILRRVSREKIE--------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 N++LRR+ +EK + RIA PEW N + V + A Sbjct: 118 NAVLRRLIQEKDHLVSLFPQDTVSRIALKYSFPEWMVRLWLNTMSETSVEELCAAQNIRP 177 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQD 227 + + + L + E + SLPG+ +G++ VQD Sbjct: 178 SLTIRANELKISQDDLIKLLEQRSIMYSCGVYLPEALNIEQNVDVESLPGYDDGLFAVQD 237 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 ++ + + ++D C+APGGK + + ++ ++DV R+E ++ Sbjct: 238 EASMMVAHVVDPRPGQIIIDACSAPGGKAVHMAQFMKDQGRILSVDVYPHRIELIKAQCA 297 Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL + + + D+ Y + DAVL+DAPCS+ G IR PD+ W R DI + Sbjct: 298 RLGVNCVEPVCYDSTIYNEDWYGVADAVLIDAPCSALGIIRHKPDIKWRRIEKDIGELLQ 357 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR++L +VKP G +++S C+++ +++ +V L + + Sbjct: 358 IQRQILDTCSLYVKPRGALIYSTCTINPDENQNMVNSFLNDHSDFI--LDDVYQKLPHAL 415 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A S + W++ P+ +DGFF + ++ Sbjct: 416 SASRDSRDKWVQFYPN--------EDKIDGFFVARMLKV 446 >gi|170747459|ref|YP_001753719.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653981|gb|ACB23036.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831] Length = 459 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 186/442 (42%), Positives = 242/442 (54%), Gaps = 12/442 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 +G+ R + ++ ++ + L L A L+ D L RAI T R Sbjct: 24 AGLATRRAAMQAVASLIGQERPPALDDALAQAIRAEA---LAPADAGLARAIAVATFRRY 80 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 I A L L LP K L LL + AQIL L V D+A VDLAV AK D H Sbjct: 81 GLIRAALAARLERGLPAAKPQLTALLATATAQILDLAVPDHAAVDLAVRLAKADTRTAHL 140 Query: 121 AKLVNSILRRVSREKIELLQRIAGISII--PEWFKERLENFYGKERVLAISDACISPLYI 178 A LVN++LRRV+RE+ +L A + P+W R YG ER AI+ A ++ I Sbjct: 141 AGLVNAVLRRVARERDAILAADADALAVNTPDWLARRWVAAYGPERAAAIARAHLAGAAI 200 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 DLT + D WA +L A LPTG +RL E +I LPGF EG WWVQDA+A++P +L G Sbjct: 201 DLTPRGDAGDWAARLGAATLPTGSLRLPENGPAIPDLPGFQEGAWWVQDAAAALPARLLG 260 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLDLCAAPGGKT QL +GA+VTA+D S RLE+LR N+ RL A D++ DA Sbjct: 261 PREGTRVLDLCAAPGGKTLQLAATGARVTAVDRSAPRLERLRENVARLGF-AVDVVVADA 319 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 P+ DAVL+DAPCS+TGTIRRHPDV WT+ DI + A Q +LL + V+PG Sbjct: 320 LALEPQDH-DAVLLDAPCSATGTIRRHPDVAWTKAEADIGRLAALQARLLDHAAALVRPG 378 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+ CSL+ ++ E V L P VP+ + A + G +R P Sbjct: 379 GLLVYCTCSLEPEEGEAQVAAFLAREPGYAR-VPVRPD--EVGGAAALIDDCGDLRTLPC 435 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 L +I G G+DGFFA LRR Sbjct: 436 HLPEIPGARGGLDGFFASRLRR 457 >gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. D5] gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. D5] Length = 451 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 101/462 (21%), Positives = 194/462 (41%), Gaps = 35/462 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M ++ R + LL + + L S ++ L ++++ + + TL L Sbjct: 1 MTKPLSDREIVLGLLLDITEHDVYSHIALGNVL--SKYQYLDKKERAFITRVTEGTLEHL 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K ++ +LR +V Q+ Y+D V D AV + AV+ A + K Sbjct: 59 MELDYILGQFSKVKVKKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVK-KGFGS 117 Query: 120 FAKLVNSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR V+R + + +PEW ++ Y +E V + Sbjct: 118 LRGFVNGVLRNVARGLDTVEYPKDALAALSVRYSMPEWILKKWLTEYDRETVETMLADFQ 177 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWW 224 + + + E +L + + + + + F EG++ Sbjct: 178 KEKPVTIRCNINRCLPEELEARLESEGVKAVRHLYLPYAYRITGYDYLGDMESFREGLFA 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRC 281 VQD S+ + ++ ++D+CAAPGGK+ L V A D+++ + +R Sbjct: 238 VQDVSSMLVGEIADPKQGDYIIDVCAAPGGKSIHLADRLSGTGHVDARDLTEYKTSLIRD 297 Query: 282 NLDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N+DR+ + ++MDA D + D V+ D PCS G + R D+ + + Sbjct: 298 NIDRMQMKNISAVQMDASVLDAASVEKADIVIADLPCSGLGVLGRKTDLKYRTTEKQTEE 357 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 QRK+L S+VKPGG++++S C++++ +++E V+ L + P P Sbjct: 358 LVLLQRKILDVVCSYVKPGGVLLYSTCTINRAENQENVKWFLETHPDFA---PEQLEDRL 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + G +++ P + DGFF R+ Sbjct: 415 CTELQDDVRDSGCLQLLPGV--------HDSDGFFIARFRKK 448 >gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora CFBP1430] gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora CFBP1430] Length = 456 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D LV+ + LR L Sbjct: 28 MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKCVDDKDAALVQELCYGVLRTL 82 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ V+ ++ + K+ ++ L+ V + Q+++ + +A + VE A K + Sbjct: 83 PQLEWVISKLMSRPMTGKQRAIHFLIMVGLYQLMFTRIPPHAALAETVEGAVALKRPQ-L 141 Query: 121 AKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N +LR+ R++ +L+Q++ + P+W ERL+ + + + + ++ P+ Sbjct: 142 KGLINGVLRQFQRQQDQLMQQMNDGDQQYLHPKWLLERLKRAWPEQWQQIVAANNQRPPM 201 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P ++ LPGF +G VQDAS Sbjct: 202 WLRVNRQYHSRDAWLALLEESGKQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQDAS 261 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL+ Sbjct: 262 AQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLN 321 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + D +C LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 322 MQAE-VKLGDGRTPAAWCGDTLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 380 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L +K GG ++++ CS+ +++ + + L+ + + Sbjct: 381 QQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHANAALVATGDLTQP------ 434 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGF+ L + Sbjct: 435 -------GIQVLPQV--------DGGDGFYYAKLVK 455 >gi|218514046|ref|ZP_03510886.1| probable RNA methyltransferase - sun protein [Rhizobium etli 8C-3] Length = 380 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 199/382 (52%), Positives = 257/382 (67%), Gaps = 4/382 (1%) Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 LPRIDA + +L S LP +L +L + AQILYLDV D++ VDLAVEQA +D NR Sbjct: 1 HLPRIDAAIASLLESPLPEGARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNR 60 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 FAKLVN++LRR+ REK +L I ++ +P WF RLE YG++ LAIS + + P I Sbjct: 61 RFAKLVNAVLRRLGREKDPVLAEIGKVAPMPSWFLARLEKAYGRDAALAISQSQLEPAAI 120 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 DLTVK D E WA +LN V LPTGG+RL I SL GF EG WWVQDA+ASIP +LFG Sbjct: 121 DLTVKSDAEGWAKRLNGVALPTGGVRLAAFDGGIPSLEGFDEGAWWVQDAAASIPARLFG 180 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 L+ DLCAAPGGKTAQLI++G VTALD S+ RL +LR NLDRL L AE + D Sbjct: 181 DLSGKRAADLCAAPGGKTAQLILAGGTVTALDQSESRLRRLRSNLDRLGLKAETV-AADL 239 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + P + FDA+L+DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL ++ +KP Sbjct: 240 TTFKPAEGFDAILLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHALTLLKPL 299 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +VFSNCSLD + EEVV +VL + +E V +++ W ++ A ++ G R P Sbjct: 300 GTLVFSNCSLDPAEGEEVVARVLSDT-DAIERVAISAGDWPGLEAA--ITSLGEFRTLPT 356 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 ML+ +G++SG+DGF+A LRR Sbjct: 357 MLKMPEGIASGLDGFYAAVLRR 378 >gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755] gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755] Length = 452 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 118/471 (25%), Positives = 203/471 (43%), Gaps = 49/471 (10%) Query: 1 MKSGM-----NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK + R V+ L + + LL L+ +D L+ +V Sbjct: 1 MKRNLGDIQYTVRFVALEALLRIEKGGAYSNLLLRELMNQGR---LNDKDGRLLTELVYG 57 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 T+ +D LD + ++ + ++ LLR+S+ Q+LYLD V +A++ AV+ AK Sbjct: 58 TISRQLLLDYYLDRFIKNA-RKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKA- 115 Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 K N K VN +LR + R+ + ++R+A +P W ++L G E Sbjct: 116 KGNPGTGKFVNGVLRTIQRQGVPDLALIKDPMERLATEISLPLWLTKKLVKQIGIEETSE 175 Query: 168 ISDACISPLY-------IDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFA 219 + A P + ++ IE + ++A + + + Sbjct: 176 LGYALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELSPYGVVADKGFMAGSSLYK 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKR 274 EG+ +QD S+ + + + VLD CAAPGGKT + G+KVTALD+ Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGSKVTALDIHAH 295 Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 +++ ++ N RL + A + + + FD +LVDAPCS G +RR PD+ + Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKY 355 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 ++ D + QR++L +K GI+V+S C++ ++++++VV L P E Sbjct: 356 SKTEADFQRLPRIQREILESAAPTLKKSGIMVYSTCTILEEENQQVVAAFLADHP-EFEQ 414 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PL +A E + I P DGFF LR+ Sbjct: 415 MPLAVG-----PLAAEAVQEDMLTIYPQDFM--------TDGFFISCLRKK 452 >gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20] gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20] Length = 452 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 118/471 (25%), Positives = 201/471 (42%), Gaps = 49/471 (10%) Query: 1 MKSGM-----NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK + R V+ L + + LL L+ +D L+ +V Sbjct: 1 MKRNLGDIQYTVRFVALEALLRIEKGGAYSNLLLRELMNQGR---LNDKDGRLLTELVYG 57 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 T+ +D LD + ++ + ++ LLR+S+ Q+LYLD V +A++ AV+ AK Sbjct: 58 TISRQLLLDYYLDRFIKNA-RKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKA- 115 Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 K N K VN +LR + R+ + ++R+A +P W ++L G E Sbjct: 116 KGNPGTGKFVNGVLRTIQRQGVPDLALIKDPMERLATEISLPLWLTKKLVKQIGIEETSE 175 Query: 168 ISDACISPLY-------IDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFA 219 + A P + ++ IE + ++A + + + Sbjct: 176 LGYALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELSPYGVVADKGFMAGSSLYK 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKR 274 EG+ +QD S+ + + + VLD CAAPGGKT + G KVTALD+ Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAH 295 Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 +++ ++ N RL + A + + + FD +LVDAPCS G +RR PD+ + Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQFDRILVDAPCSGLGLMRRKPDIKY 355 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 ++ D + QR++L +K GI+V+S C++ +++++VV L P E Sbjct: 356 SKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCTILAEENQQVVAAFLADHP-EFEQ 414 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PL +A E + I P DGFF LR+ Sbjct: 415 MPLAVG-----PLAAEAVQEDMLTIYPQDFM--------TDGFFISCLRKK 452 >gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. RCC307] gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp. RCC307] Length = 454 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 135/455 (29%), Positives = 194/455 (42%), Gaps = 52/455 (11%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ RLV+ +L V L+ E S LS RD+ L + +R R+ Sbjct: 28 GLPPRLVAWRVLEAV-GDGAYADLALERELKRSK---LSPRDRGLATELAYGAIRQRRRL 83 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D LD + ++ L+ LL V + QIL +D V A V AVE AKR++ + A Sbjct: 84 DGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERL-QRLAP 142 Query: 123 LVNSILRRVS---------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +VN +LR + +R+A +P+W L G ER A++ A Sbjct: 143 VVNGVLRAAVRAVEAGESLPVPSDPQKRLALEHSLPDWLVAELWGQIGPERTEALAAASN 202 Query: 174 SPLYIDLTVK---FDIETWAHKLNAVM--LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 +DL E L AV G+ L P + L GF+EG W VQD Sbjct: 203 RIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLTSRPGPLPQLAGFSEGQWCVQDR 262 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +A L VLD CAAPGGKT + + +V A+DV+ RRL+++ N +R Sbjct: 263 AAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANAER 322 Query: 286 LHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L DA D + FD VL+D PCS GT+ RH D W D I + Sbjct: 323 LGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGTLARHADARWNLKPDGIEELVGL 382 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL QG +KP G +V++ C++ ++ VV+ + +P P Sbjct: 383 QHQLLEQGARLLKPDGRLVYATCTVHPAENTGVVEAFVEENPDWQFSEPP---------- 432 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +++ PD G DGFFA L Sbjct: 433 ---------MQLWPD--------PQGGDGFFAAVL 450 >gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245] gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245] Length = 451 Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 117/461 (25%), Positives = 200/461 (43%), Gaps = 34/461 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K M +R ++ +L + L + + L+Q D+ L +VN LR Sbjct: 4 KESMTSRELALKVLQNIESGEKKSGTALHEQLSHT---SLNQNDRALATELVNGVLRRRL 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D + + L+ +LR+ Q++YLD + +A V+ +V A+R K H Sbjct: 61 TLDTFIGRYYHHRYEKAAPVLKNILRIGAYQLIYLDRIPHWAAVNESVSLARRYKG-EHM 119 Query: 121 AKLVNSILRRVSRE----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 AKLVN++LR ++ E K++ +QR++ + PEW ER YGKER AI Sbjct: 120 AKLVNAVLRNITPETISADLDPSGKMKEIQRLSITASHPEWLLERWIARYGKERAEAILA 179 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP------GFAEGVWW 224 + T L T I L +S +G+ Sbjct: 180 YNNRTPLTGFRINPLKTTPQEFLATENSKTARIGKSGLENFFLSTEFSCYESAIKQGLLT 239 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 VQ+ + + L ++LDLCAAPGGK+ + + +TA+D+ ++L+KL Sbjct: 240 VQNPTQGLACLLCDPQPGSTLLDLCAAPGGKSTFCGELMQNTGNITAVDLYSQKLQKLSE 299 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + L + E DA Y P++ +L+DAPCS TG + R ++ W ++ I + A Sbjct: 300 HAGELGITIISTAEADARTYLPEQPPAVILLDAPCSGTGVLARRAELRWKLTSETITELA 359 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL S + G ++++ CS++ +++E+ ++ L P + P + A + Sbjct: 360 LLQVELLDHAASLLAENGTLLYATCSIEPKENEQQIEAFLIRHPEFMR-DPASGALPEP- 417 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A P G + P G DG FA L++ Sbjct: 418 -FASKAVPNGTLLTLPG-------EHEGFDGGFAQRLKKTA 450 >gi|300854445|ref|YP_003779429.1| putative rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 443 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 201/457 (43%), Gaps = 42/457 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L+ V+ +L+ + + LV IV TL+++ ID + Sbjct: 4 ARSTAVEILNEVLGSNAYSNKVLNTYLNKNNLNKKDK---ALVTEIVYGTLKYMYTIDTI 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 LD + SSL + + +LR+S+ Q+ YLD + ++AVV+ AVE K+++ +KLVN Sbjct: 61 LDDFIKSSLKKMNIDIVNILRISIYQLRYLDKIPEFAVVNEAVEL--SKKKSKGLSKLVN 118 Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR R K L P W + YG+ +I + Sbjct: 119 GVLRNYLRNKDNLHCEHKDNKIDNLCFKYSFPRWMTLLFIHQYGEAVGESILQSLNYIPK 178 Query: 178 IDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + + + + +I P F +G VQD Sbjct: 179 VTVRVNGLKIDYKSVWDELLKNGYDIQKGKICKEAVVINRGSNIEENPLFKKGYITVQDE 238 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + + N++VLD+C+APGGK+ + + + + A D+ + +L + N +R Sbjct: 239 SAMLVAHIVDPEENMTVLDMCSAPGGKSCHMAELMKNTGVIYAYDLHENKLRFVEENANR 298 Query: 286 LHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + ++D + + D VL+D PCS G +R+ P++ W + + Sbjct: 299 MDIKNIKCNKLDAEKYVEQFEATADRVLIDVPCSGLGIVRKKPEIKWNKSMKSLNSLINV 358 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QRK++L +VK GG +++S C+L+K ++E+ + +R +P +L + + +I Sbjct: 359 QRKIMLNASRYVKDGGKLIYSTCTLNKSENEDNINWFIRENP-QYKLEKIYCGDFDNI-- 415 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG+I I PD MDGFF + + Sbjct: 416 --IYHKEGYITILPD---------DNMDGFFIAKMIK 441 >gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824] gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum ATCC 824] gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018] Length = 441 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 198/457 (43%), Gaps = 42/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + +L+ V+ +L+ +S +D+ LV IV T+++ ID Sbjct: 3 NTRKIVLDVLNKVLSHDGFSNIVLNKALK---GEEISSKDKGLVTEIVYGTIKYKYSIDI 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + + + + + +LR+S+ QI YLD + D+A V+ AV K+ + +K V Sbjct: 60 IISKFVKTKINKIDKRVLNVLRMSIYQIRYLDKIPDFAAVNEAVNITKKYISLKS-SKFV 118 Query: 125 NSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N++LR R W + Y + I Sbjct: 119 NAVLRNYLRNPNIAFYNKDNSVEKLCFNYSFEPWMVKFFLKQYKN-KAEEILKGLNENPS 177 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDA 228 I + V + ++L + + + SI + P F G + VQD Sbjct: 178 ITIRVNRLKTSHKELWNELEKLDYNIEEGYILKDAIRIKKGHSIENNPLFVRGEFTVQDE 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285 SA + + NL + D+C+APGGKT + + + A D+ + +++ + N R Sbjct: 238 SAMLVSECMDIKENLVIFDMCSAPGGKTTHMGELLKNTGTIYAFDLHESKIKLINENAKR 297 Query: 286 LHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + +D ++ D +LVDAPCS G IR+ P++ W ++ D+ + + Sbjct: 298 LGVENINASVLDASSYHDDFVNKADRILVDAPCSGLGIIRKKPEIKWNKNIKDLKELSDI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+ +L ++K GI+++S C+L+K ++E+ + + L+++P ++ P+ + ++ Sbjct: 358 QKNILQNASLYLKKEGILLYSTCTLNKDENEKSIIQFLKNNPN-FKVEPIEFGEFPNLIY 416 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + I P+ MDGFF L++ Sbjct: 417 SP-----YGVTILPNEY---------MDGFFMCKLKK 439 >gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109] gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109] Length = 456 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 200/466 (42%), Gaps = 46/466 (9%) Query: 8 RLVSSHLLSCVMRKRIS-------LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 R ++ ++S + + L L++ D LS D+ L+R +V LR+ Sbjct: 2 RGLAVEIISIWQKTNVPGGAPGPFLDALIEQTLSDHP--RLSHPDRALLRELVTGVLRWR 59 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 R+D + V + + + LLR++ Q+L+LD + A V+ +V+ AK + Sbjct: 60 GRLDYAIGQVSHQPVNKLHPLVLNLLRLTTYQLLFLDRIPASAAVNESVKLAKIHRLPPA 119 Query: 120 FAKLVNSILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 VN+ R++ +IE + +A + PEW R G E + Sbjct: 120 LIGFVNAAARKLATALPDLPLPDPEIEPVTALAVATSHPEWLAARWLERLGPEAAWKRAQ 179 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAE 220 A + + V T L + T R + L +S +LP + Sbjct: 180 ANNLHPPLSIRVNTALISPATLQVVLQTEGIATESGRFSPVGLTICSLKQSPFNLPSYQR 239 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLE 277 G+W QD +A + L +L++ A GGKT L ++ A+D S R+ Sbjct: 240 GLWLFQDEAAQLATLLLQPQPGHGILEIGAGRGGKTTHLAQLLRGKGRILAVDHSLERMA 299 Query: 278 KLRCNLDRLHLYAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 L + RL L D++ DA P+ FD +L+DAPCS G +RRHP++ W R Sbjct: 300 ALNRSRQRLGLTGVDLLLTDATLSLPIQPEHRFDRILIDAPCSGLGVLRRHPELRWRRQP 359 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D+ + A Q LL Q +++PGG++++ C+ + +++E V+ LRS P L P Sbjct: 360 GDLDRFARLQAALLRQAAPYMRPGGLLLYITCTTEPEENESVMAAFLRSHP-DFALHPGP 418 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ + +G+ R P +DGFFA L + Sbjct: 419 VSDAP--EITPFIDADGYFRTLP--------ERHDLDGFFAALLAK 454 >gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio fibrisolvens 16/4] Length = 423 Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 97/455 (21%), Positives = 198/455 (43%), Gaps = 48/455 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G+N R ++ + ++ L + L + ++ + +VN T+ Sbjct: 1 MA-GINLREIAMETVIEILENGQFSHIYLKAVLDKYGY--LEKNERAFLNRLVNGTVERK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D ++D + + + K ++ ++R+ V +I Y+D V D A + V+ AK+ + Sbjct: 58 LQLDYIIDSFSKTKVKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYVKLAKK-RGFAG 116 Query: 120 FAKLVNSILRRVSREK-IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + VN +LR +SREK + ++ +P+W ++ YG E+ I +S + Sbjct: 117 LSGFVNGVLRNISREKGKLEFKDLSVKYSMPQWIVDKWSADYGVEKTEEILAGFLSSEDL 176 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDAS 229 + V E + +L + +S+ S+P F EG+++VQD S Sbjct: 177 CIRVNLGKISREDLSERLKKQGISVRICDTVVSACYISDYDSLASIPEFNEGLFYVQDYS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 + + + ++LD+CAAPGGK +V A D++++++ ++ N++R Sbjct: 237 SQLVPYAAKISRSQNILDVCAAPGGKALHCGELAYKGQVVARDLTEQKVSLIQENINRTG 296 Query: 288 LYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + DA + +D V+ D PCS G IR+ PD+ + + + + + Q+ Sbjct: 297 ALNVTAQQWDATVLDEDSIRKYDTVIADLPCSGLGIIRKKPDIKYNQTEESLSELTQLQK 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +VK GG++ +S C+++K ++E ++ L S Sbjct: 357 KILDTVCQYVKDGGVLSYSTCTINKSENENQIEDFLSSHKEFKV---------------- 400 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E ++ P+ DGFF +++ Sbjct: 401 ----ESMTQLFPNEE---------HDGFFICVMKK 422 >gi|254295350|ref|YP_003061373.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814] gi|254043881|gb|ACT60676.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814] Length = 487 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 152/440 (34%), Positives = 222/440 (50%), Gaps = 10/440 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++G +R ++ +L ++ + + L F L D+ RAI + LR Sbjct: 58 QNGWQSRRAAADILMRIVHEGADMDEALA---SSKFFDELEGPDRGFARAIASAALRAFG 114 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 RID L+ L L + ++ LLRV AQ+ L YA VD VE A++ K Sbjct: 115 RIDDALETYLDRPLEKIDPAVLSLLRVGCAQLWVLKAPSYAAVDATVEAARQWKPASRGG 174 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR RE A P+W ER + G+E I+ + IDLT Sbjct: 175 GMVNAILRRAGREPEAYESLPASRIW-PDWLSERFSSALGEETTQNIAMMQMLEPRIDLT 233 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 VK D E WA KL LP+G +RL S+ L G+ EG WWVQD +A++P QLFG + Sbjct: 234 VKSDPEAWAQKLEGTALPSGSVRLPTGA-SLTELEGYVEGEWWVQDVAATLPAQLFGDVK 292 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 LS+ DLCAAPGGKT QL GAKVTA+D+S++R+EK+R NL+R L A DA + Sbjct: 293 GLSIGDLCAAPGGKTMQLASKGAKVTAIDLSEQRIEKVRENLERTGLKA-KTQVTDARHW 351 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P + FDAVL+DAPCS+ GT+RRHP+ W R+ + + + Q KL+ +K GG + Sbjct: 352 RPAEPFDAVLLDAPCSALGTLRRHPEGAWRRNDKGLDRYSGLQIKLVQAAYDMMKSGGTM 411 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++ C+ + EVV++ + S P+ + A+ G + P Sbjct: 412 LYCVCTPLPAEGIEVVKEAVDS--GKWISKPITPEEVPGYE--HAIDDFGGLLSLPKFDI 467 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + D F+ L ++ Sbjct: 468 ENPEDLITSDVFYMARLEKV 487 >gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia intestinalis M50/1] gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia intestinalis XB6B4] Length = 446 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 103/476 (21%), Positives = 188/476 (39%), Gaps = 66/476 (13%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R ++ +L V +L ++ + + ++ + +V T++ + Sbjct: 1 MTDTVNTRRLALDVLLEVTEHGAYSNQVLRAVLE--KYQYMEKYERAFLTRLVEGTIQHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D V+D + + K ++ +LR+ V QI Y+D V D A + AV+ A++ Sbjct: 59 IELDYVIDQFSKVKVKKMKPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARK-SGFST 117 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 + VN +LR ++R + + +PEW E N YG E+ AI D Sbjct: 118 LSGFVNGVLRNIARNSGSIRYPDEEKEPVLALSVRYSMPEWIVEEWLNAYGMEQTKAILD 177 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLP-----------------TGGIRLKELPE 210 A I + + +L A + + Sbjct: 178 AFSKEAPITIRTNVTKITPDALKEQLKAEGVTVQTLEELSYAGLPYTDAYHYAFAISGFD 237 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVT 267 +++LP F +G+++VQD S+ + + V+D+CAAPGGK+ L V Sbjct: 238 HLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVIDVCAAPGGKSIHLAEMLDGTGSVE 297 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRH 325 + D++ + + N+ R + DA + D ++ D PCS G +R+ Sbjct: 298 SRDLTGYKTGLIEENISRYQIKNMTTKVWDATVPDESAEDTADVLVADLPCSGLGVLRKK 357 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 D+ + + QR++L S+VK GI+V+S C+++ +++E V L P Sbjct: 358 TDIRYKMSRGQQEELEELQRRILDTICSYVKKDGIMVYSTCTINPGENQENVAWFLGKHP 417 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EL+ + +I P DGFF LRR+ Sbjct: 418 -EFELLDME-------------------QIYPGTQVG--------DGFFYARLRRI 445 >gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora ATCC BAA-2158] Length = 429 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 218/456 (47%), Gaps = 44/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L +A + + +D LV+ + LR L Sbjct: 1 MKKMTNLRCIAARTIEQVVEQGQSLSNVLP-----AAQKCVDDKDAALVQELCYGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ V+ ++ + K+ ++ L+ V + Q+++ + +A + VE A K + Sbjct: 56 PQLEWVISKLMSCPMTGKQRAIHFLIMVGLYQLMFTRIPPHAALAETVEGAVALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N +LR+ R++ +L+Q++ + P+W ERL+ + + + + ++ P+ Sbjct: 115 KGLINGVLRQFQRQQDQLMQQMNDGDQQYLHPKWLLERLKRAWPEQWQQIVAANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L L P ++ LPGF +G VQDAS Sbjct: 175 WLRVNRQYHSRDAWLALLEESGKQAFSHPLHCDALRLESPCTVHQLPGFDQGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A V L N +LDLCAAPGGKT ++ + + V A+DV +RL ++ NL RL+ Sbjct: 235 AQGCVALLAPQNGEQILDLCAAPGGKTTHILEAAPQANVLAVDVDAQRLTRITENLQRLN 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + AE + D +C LFD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MQAE-VKLGDGRTPAAWCGDTLFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAALQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L +K GG ++++ CS+ +++ + + L+ + + Sbjct: 354 QQILDAVWPHLKSGGTMLYATCSVLPEENHLQISQFLQRHANAALVATGDLTQP------ 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ P + G DGF+ L + Sbjct: 408 -------GIQVLPQV--------DGGDGFYYAKLVK 428 >gi|163739806|ref|ZP_02147213.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107] gi|161386840|gb|EDQ11202.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107] Length = 421 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 141/440 (32%), Positives = 215/440 (48%), Gaps = 22/440 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + HLL V+ + LL Y A L ++ + + TLR L Sbjct: 1 MSNATQARRRAIHLLDEVLGEGK----LLSECYAAGALDKLPAEERARTQRLATDTLRNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D +L L + P ++ LR+ ++ A + VV+ V+ R + + Sbjct: 57 ERADRILQKHLKKATP---LTVHNALRIGTVELCQGG-AAHGVVNEMVDIVSRHRRHGKL 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR+V+ ++ + +P+W + L +G +L I A ++ +DL Sbjct: 113 KGLVNAVLRKVADHGPAEWAKL-RVPRLPKWLRSPLSQAWGAPAMLQIEAAHLAGAPLDL 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + K + L AV+LPTG R+ + + LPGFA G WWVQDA+A++P Q+ Sbjct: 172 SPKPGAD--LSALEAVLLPTGSYRIHNSVQ-VSGLPGFATGDWWVQDAAAALPAQILAAK 228 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 SVLDLCAAPGGKT Q+ +GA VTA+D S R+ +L NL+R L A ++ Sbjct: 229 PGESVLDLCAAPGGKTMQIAAAGANVTAVDQSAGRMARLSENLERTGLEATVVV---GDA 285 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +DAVL+D+PCS+TGTIRRHPD+ +D Q ++L S VKPGG Sbjct: 286 LEQTGQYDAVLLDSPCSATGTIRRHPDLPHAKDGSGFGALIELQAQMLAHAWSLVKPGGR 345 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++ CSL + E V+ L P + D ++ EG +R+ PD Sbjct: 346 LIYCTCSLLPDEGECQVEDALEMFPDMSVGDRIRDIAGIDPDW---ITEEGGLRLRPDYW 402 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 403 ADL----GGMDGFYMAELRK 418 >gi|163744097|ref|ZP_02151463.1| ribosomal RNA small subunit methyltransferase B, putative [Phaeobacter gallaeciensis 2.10] gi|161382644|gb|EDQ07047.1| ribosomal RNA small subunit methyltransferase B, putative [Phaeobacter gallaeciensis 2.10] Length = 443 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 143/440 (32%), Positives = 216/440 (49%), Gaps = 22/440 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + HLL V+ + LL Y A L ++ + + TLR L Sbjct: 23 MSNATQARRRAIHLLDQVLGEGK----LLSECYAAGALDKLPAEERARTQRLATDTLRNL 78 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D +L L + P ++ LR+ ++ A + VV+ V+ R + + Sbjct: 79 ERADRILQKHLKKATP---LTVHNALRIGTVELCQGG-AAHGVVNEMVDIIARHRRHGKL 134 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR+V+ + ++ + +P+W + L +G +L I A ++ +DL Sbjct: 135 KGLVNAVLRKVAEQGPTEWAKL-RVPRLPKWLRSPLSQAWGAPAMLQIEAAHLAGAPLDL 193 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + K + L AV+LPTG R+ + + LPGFA G WWVQDA+A++P Q+ Sbjct: 194 SPKPGAD--LSALEAVLLPTGSYRIHNSVQ-VSGLPGFATGDWWVQDAAAALPAQILAAK 250 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 SVLDLCAAPGGKT Q+ SGA VTA+D S R+ +L NL+R L A ++ Sbjct: 251 PGESVLDLCAAPGGKTMQMAASGANVTAVDQSAGRMARLSENLERTGLKATVVV---GDA 307 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +DAVL+DAPCS+TGTIRRHPD+ +D Q ++L S VKPGG Sbjct: 308 LEQTGQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGALIELQAQMLAHAWSLVKPGGR 367 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++ CSL + E V+ L P + D ++ EG +R+ PD Sbjct: 368 LIYCTCSLLPDEGECQVEDALEMFPDMSVGDRIRDIEGIDPDW---ITEEGGVRLRPDYW 424 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 425 SDL----GGMDGFYMAELRK 440 >gi|255261461|ref|ZP_05340803.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62] gi|255103796|gb|EET46470.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62] Length = 425 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 148/441 (33%), Positives = 225/441 (51%), Gaps = 19/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G R + HLL ++ + L+ G A + L D + + TLR Sbjct: 1 MAQTGYAPRRAAVHLLDQIIDEGR----LMSELIGGGALKHLDAGDTARAQRLTVETLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L ++ +LR+ +I A + VV+ AVE + + Sbjct: 57 LDRADRMLKPFLKRKPGG---TVMNVLRLGTVEICAEGAAAHGVVNSAVEIVSKSQRTSA 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LRRV+ + E R+ + + W + L + YG++ V A+ A + +D Sbjct: 114 MKGLVNAVLRRVAEQGSEKWNRL-PVPKLANWLRSPLVDGYGRKTVEAMEAAHFAGAPLD 172 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L+VK DI A + V+LPTG +RL + + L GF G WWVQDA+A+IP ++ Sbjct: 173 LSVKGDIAAVAEAVGGVVLPTGSVRLSD-YGQVSKLAGFEAGDWWVQDAAAAIPARILAP 231 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + VLD+CAAPGGKT Q GA+VTALD+S RR+ ++ NL R L AE + DA Sbjct: 232 QSGERVLDMCAAPGGKTMQAAAMGAQVTALDLSDRRMARVSENLSRTGLDAEIV-VGDAL 290 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D+ +DA+L+DAPCS+TGT+RRHPD+ +D + Q L +S +KPGG Sbjct: 291 DFSEGG-WDAILLDAPCSATGTLRRHPDLPLAKDGSEFGNLIDMQGAFLDHALSLLKPGG 349 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E + + L P + V ++ + +D A + EG +R+ PD Sbjct: 350 RLVFCTCSLLPDEGEVQIDEALERHPDLI--VDRDAVLVQGVDSAWQ-TQEGGLRLRPDY 406 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 G+DGF+ LR+ Sbjct: 407 WAD----QGGIDGFYMACLRK 423 >gi|163745468|ref|ZP_02152828.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45] gi|161382286|gb|EDQ06695.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45] Length = 423 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 140/441 (31%), Positives = 222/441 (50%), Gaps = 20/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G+ AR + +LL ++ L+ A L D+ + + TLR Sbjct: 1 MADTGVQARRSAVYLLDMILDDE---PRLMSELLASGALDKLPPDDRARAQRLAQDTLRG 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L + P +++ +LRV ++ A + VV+ V + + H Sbjct: 58 LERADRLLQKHLQKAPP---LTVRNVLRVGTVELCQGG-AAHGVVNAMVNLVSQHRTLSH 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L N++LR+++ + E + +P+W + L +G + + A+ +A + +D Sbjct: 114 LKGLTNAVLRKIAAQGPEAWDAL-RAPRLPKWLRGPLAEAWGTDAIAAMEEAHFAGAPLD 172 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT K D A + +LPTG +R+ + ++PGFAEG WWVQDA+A+IPV++ Sbjct: 173 LTAKGDASALAEAVGGTLLPTGSVRVMNA-GQVSAMPGFAEGDWWVQDAAAAIPVRVLAP 231 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLDLCAAPGGKT QL +GA+VTA+D S R+++++ NL R+ L A+ + + Sbjct: 232 KEGERVLDLCAAPGGKTMQLAAAGAEVTAVDQSHPRMQRVKENLTRVGLKAKTLTKDARA 291 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDA+L+DAPCS+TGTIRRHPD+ +D + Q +L+ S +KPGG Sbjct: 292 VQGE---FDAILLDAPCSATGTIRRHPDLPHAKDGSEFGDLIELQSELIDHAWSLLKPGG 348 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E V + L +A + A ++ EG +R+ PD Sbjct: 349 RLVFCTCSLLPDEGEVQVDEALERHGDMTVD---RAALDVAGVEAAWITEEGGLRLRPDF 405 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 GMDGF+ LR+ Sbjct: 406 WAD----KGGMDGFYIACLRK 422 >gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1] gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1] Length = 451 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 125/460 (27%), Positives = 202/460 (43%), Gaps = 40/460 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L V R L L A + +RD+ L I TLR +D +L Sbjct: 6 RRRAYQALIRVERDGAYLNVALQEAL---AGAGVDERDRALATEIAYGTLRRQITLDRLL 62 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++ + + ++ +LR+ Q+ +L V YAV + AVE AKR + A LVN+ Sbjct: 63 SPLVRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAVANDAVELAKRHR--PQAAALVNA 120 Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +LRR + + R + + +P W ERL +G +RVLA + Sbjct: 121 VLRRYAERAQDWEDLLNKAIAGAKDVERWSVMYSVPAWIVERLVADHGADRVLAALASMN 180 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWW 224 P + L E +L A L + + L + +G Sbjct: 181 EPAPMSLRANRLRGTREEAIARLGAEGAVARPAALAEDGLRVQGQIDVTRLQAYRDGYVT 240 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 +QD A + L + V+DLCAAPGGKT + + ++ A DV+ ++ +R Sbjct: 241 IQDEGAMLVAPLLRPEPGMRVVDLCAAPGGKTTHVAELMGDRGEIDAYDVTVAKVRAIRQ 300 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL L + D P+ L+DA LVDAPC+ G +RR PD+ + R +D+ K A Sbjct: 301 QAERLGLQSVRPRLGDGRQVQPEALYDAALVDAPCTGLGVMRRRPDLRYRRRPEDVAKLA 360 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL + + V+ GG VV+S C+L K+++E VV++V + V + + + Sbjct: 361 QLQRELLRRACAIVRSGGCVVYSTCTLLKEENESVVREVASDPSVGVRIEDVRCDLATPL 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + G++ + P+ DGFF LRR+ Sbjct: 421 AAMVGERSAGFL-LWPNW--------HETDGFFMARLRRI 451 >gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio proteoclasticus B316] gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio proteoclasticus B316] Length = 450 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 110/465 (23%), Positives = 204/465 (43%), Gaps = 44/465 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N R + ++L R LL + L RD+ ++ + L +ID Sbjct: 2 INIREIILNILIEYDRDGNRKPSLLKDTLE--KYDYLDTRDKSFIKRVTEGCLERNIQID 59 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++D + + + + ++ L+R+S QI+++D V D A + AV+ A + K Sbjct: 60 YIIDSYAKTPVRQMQPFIRALMRMSTYQIMFMDSVPDSAACNEAVKLAAKHKF-AGLKGF 118 Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR VSR K ++ + + +PEW E YG ++ + + + Sbjct: 119 VNGVLRNVSRGKDQIKYPDKKENGGTDYLSVMYSMPEWLCEMWIGEYGFDKTEKMLEFFL 178 Query: 174 SPLYIDLTVKFDI------ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEG 221 SP + V ++ + L L ++I LPGF EG Sbjct: 179 SPRPTTIRVTRNLPQSISVQELEQNLGEAGATVRANSLLPYALELEKTDNIKYLPGFKEG 238 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278 + VQD S+ + V++ N V+D+CAAPGGK+ + V + D+S ++++ Sbjct: 239 QFAVQDVSSMLVVEVADPQNKQVVIDVCAAPGGKSMHAAERVYPDGTVYSRDLSDKKIQL 298 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N RL L +I DA + + D +L+D PCS G + R D+ Sbjct: 299 IEDNALRLGLNNVNIKVNDAKIHDEELKSQADILLLDVPCSGLGILGRKNDIKHNIKPKG 358 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + Q +++ +VK GG +++S C+++K ++EE+V+K+ P +L Sbjct: 359 LEELTKLQWEIVKSCWDYVKIGGTLIYSTCTVNKAENEEMVRKICNELP--FKLEDFTDK 416 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + +G+I++ P G DGFF L+R+ Sbjct: 417 LPEPLRES---ASKGYIQLIPGEY--------GTDGFFIAKLKRI 450 >gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia intestinalis L1-82] gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia intestinalis L1-82] Length = 446 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 103/476 (21%), Positives = 188/476 (39%), Gaps = 66/476 (13%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R ++ +L V +L ++ + + ++ + +V T++ + Sbjct: 1 MTDTVNTRRLALDVLLEVTEHGAYSNQVLRAVLE--KYQYMEKYERAFLTRLVEGTIQHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D V+D + + K ++ +LR+ V QI Y+D V D A + AV+ A++ Sbjct: 59 IELDYVIDQFSKVKVKKMKPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARK-SGFST 117 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 + VN +LR ++R + + +PEW E N YG E+ AI D Sbjct: 118 LSGFVNGVLRNIARNSGSIRYPDEEKEPVLALSVRYSMPEWIVEEWLNAYGMEQTKAILD 177 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLP-----------------TGGIRLKELPE 210 A I + + +L A + + Sbjct: 178 AFSKETPITIRTNVTKITPDALKEQLKAEGVTVQTLEELSYAGLPYTDAYHYAFAISGFD 237 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVT 267 +++LP F +G+++VQD S+ + + V+D+CAAPGGK+ L V Sbjct: 238 HLMALPSFQDGLFYVQDISSMMVAEAAAPEKGAHVIDVCAAPGGKSIHLAEMLDGTGSVE 297 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRH 325 + D++ + + N+ R + DA + D ++ D PCS G +R+ Sbjct: 298 SRDLTGYKTGLIEENISRYQIKNMTTKVWDATVPDESAEDTADVLVADLPCSGLGVLRKK 357 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 D+ + + QR++L S+VK GI+V+S C+++ +++E V L P Sbjct: 358 TDIRYKMSRGQQEELEALQRRILDTVCSYVKKDGIMVYSTCTINPGENQENVAWFLGKHP 417 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EL+ + +I P DGFF LRR+ Sbjct: 418 -EFELLDME-------------------QIYPGTQVG--------DGFFYARLRRI 445 >gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7] gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7] Length = 431 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 198/456 (43%), Gaps = 50/456 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + LL+ + LLD S F +RD+ + A+ + +DA+ Sbjct: 4 ARWYTVRLLTKLDENNSYSNILLDESLSRSDF---DKRDKKFIAALFYGVIERRLTLDAI 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + + + Y+L+ +LR + Q+ Y+D V D A VD +VE AK+ N N Sbjct: 61 IVDLSKNPKSKLNYTLRNILRCGLYQLKYMDSVPDNAAVDESVELAKKC-RNPAAPGFTN 119 Query: 126 SILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +LR + + +R+A PEW ++ YGK+R L++ + Sbjct: 120 GLLREFIRRSKELPKTNSETERLALEYSCPEWLVKKWSFEYGKDRCLSLLKTSLGQAPTT 179 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASA 230 + V IE L A + ++ E +I + +G + VQD ++ Sbjct: 180 IKVNNLSGGIEDTLDMLIADGVTFERSKILEYAVNVANAGAIEKTEAYRQGKFHVQDIAS 239 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + VLDLC+APGGKT ++ + KV A D+ R++ +R +RL Sbjct: 240 QLCCKALDPQPGDIVLDLCSAPGGKTFTIAEMMNNEGKVLAFDLHPNRVKLIRSGAERLG 299 Query: 288 LYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L +A + D VLVDAPCS G IRR P++ + +D + + Q Sbjct: 300 LTCVTADVNNAKIFNSDIPVADKVLVDAPCSGLGVIRRKPEIKY-KDPSEFDRLPEIQGD 358 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L +VK G +V+S C++ K ++++V++K L S V A Sbjct: 359 ILDTASKYVKANGTLVYSTCTVSKAENDDVIRKFLGSHKDFV----------------PA 402 Query: 407 LSPEGWIR-ITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +++ ITPDM G DGFF L+RL Sbjct: 403 EDEETFMQTITPDMY--------GSDGFFIAKLKRL 430 >gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont] Length = 428 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 215/456 (47%), Gaps = 43/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ L+ V+ K SL+ +L +A + L+ D L++ + R L Sbjct: 1 MKKATNLRSLAAQLIERVVDKGESLSAILP-----AAQKTLANNDGALLQELCFGVTRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++A+++ ++ L K+ L L+ V + Q+LY V +A + V A+ K + Sbjct: 56 PQLEALINKLMARPLTGKQRVLHYLIMVGLYQLLYTRVPPHAALAETVAGAEALKR-ANL 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPL 176 L+N +LR+ R++ + + P W +RL+ + + +++ ++ + Sbjct: 115 KGLLNGVLRQFQRQQDALLAEVNQGPQRYWHPGWLLKRLQTAWPAQWQLIVEANNQRPTM 174 Query: 177 YIDLT-VKFDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 ++ + + W L NA E P + LPGF +G VQD SA Sbjct: 175 WLRVNRQHHSRDAWLALLTQQDQNAFSADAPDALRLEAPAPVSQLPGFEQGWVTVQDLSA 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL 288 L N ++LDLCAAPGGKT +I A+V A+D+ +RL ++ NL RL + Sbjct: 235 QRCALLLAPENGETILDLCAAPGGKTTHIIEIALQARVLAVDIDAQRLSRVTENLQRLGM 294 Query: 289 YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + D+ + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A QR Sbjct: 295 QS-DVRQGDGRTPAAWCDEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIDELAALQR 353 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +K GG ++++ CS+ Q++++ + L + V A+ Sbjct: 354 EILAAIWPRLKSGGTLLYATCSVLPQENQQQIDAFLATHDDAV-------------PQAL 400 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P G DGFF V L + Sbjct: 401 PQGQLNGWQVFP--------AIDGGDGFFYVKLMKK 428 >gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30] gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10] gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30] gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10] Length = 452 Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 118/471 (25%), Positives = 202/471 (42%), Gaps = 49/471 (10%) Query: 1 MKSGM-----NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK + R V+ L + + LL L+ +D L+ +V Sbjct: 1 MKRNLGDIQYTVRFVALEALLRIEKGGAYSNLLLRELMNQGR---LNDKDGRLLTELVYG 57 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 T+ +D LD + ++ + ++ LLR+S+ Q+LYLD V +A++ AV+ AK Sbjct: 58 TISRQLLLDYYLDRFIKNA-RKVDPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKA- 115 Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 K N K VN +LR + R+ + ++R+A +P W ++L G E Sbjct: 116 KGNPGTGKFVNGVLRTIQRQGVPDLALIKDPMERLATEISLPLWLTKKLVKQIGIEETSE 175 Query: 168 ISDACISPLY-------IDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFA 219 + A P + ++ IE + ++A + + + Sbjct: 176 LGYALFEPNHASGRIDLQRISQAAAIERLQEEGIDARPSELSPYGVVADKGFMAGSSLYK 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKR 274 EG+ +QD S+ + + + VLD CAAPGGKT + G KVTALD+ Sbjct: 236 EGLLTIQDESSMLVAPVLQVARDHQVLDACAAPGGKTTHIAAFLSAAEGGKVTALDIHAH 295 Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 +++ ++ N RL + A + + + FD++LVDAPCS G +RR PD+ + Sbjct: 296 KVKLIQQNAQRLGVEAVVETRVMDARETAQTFAPEQFDSILVDAPCSGLGLMRRKPDIKY 355 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 ++ D + QR++L +K GI+V+S C++ +++++VV L P E Sbjct: 356 SKTEADFQRLPQIQREILESAAPTLKKSGIMVYSTCTILAEENQQVVAAFLADHP-EFEQ 414 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PL +A E + I P DGFF LR+ Sbjct: 415 MPLAVG-----PLAAEAVQEDMLTIYPQDFM--------TDGFFISCLRKK 452 >gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus sp. MC-1] gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus sp. MC-1] Length = 452 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 119/460 (25%), Positives = 213/460 (46%), Gaps = 35/460 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 KS ++ R +++ +S ++ + + L L+ + S + IV T+R + Sbjct: 3 KSHVSERTMAAAAVSAMLSEHLPLETALEQQI--HQQSGTSPEMRGRAHEIVVGTIRHMA 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ++A L + L K + ++ +L ++ Q ++ ++ VD AV+ K+ + + + Sbjct: 61 LLEATLTRFMQKDLKAKHHYVRAVLLTALYQAQFMRTPIHSAVDEAVKLVKQQPRDHNLS 120 Query: 122 KLVNSILRRVSREKIELLQ--------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173 VN++LRR + ++ R+A P W +R E G E A A Sbjct: 121 GFVNAVLRRSTEVELSTTWSAVKDPLKRLATRYSHPLWLVKRWEKRLGMEATEARLAAAN 180 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE---------SIVSLPGFAEGVWW 224 + + L + T A L A + + E + +LPG++ G + Sbjct: 181 AQAPLTLRIHTPKVTVADYLAAAKQAEIEVTVCPEAEETLMLPQGAKVATLPGYSNGWFA 240 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 VQD +A +L ++LD CAAPGGK+A L+ +G +TALD +++RLE++ Sbjct: 241 VQDRAAQAVARLLAPQAGEAILDACAAPGGKSAHLVALGGAGVVITALDSAQQRLERMGE 300 Query: 282 NLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 N+ RL + + + DA FD LVDAPC+ TG IRRHPD+ W R+ + + Sbjct: 301 NMARLGIRSQVKLRCADATQPIEGL-FDRALVDAPCTGTGVIRRHPDIKWRRNPSGLAEV 359 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q+++L + VKPGG++V++ CSL+ ++E+ V + L+ P L + Sbjct: 360 VKQQQQILQSVAAAVKPGGLLVYATCSLEPDENEQQVARFLKEHPQWKRL---PLEAGMA 416 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G +R P + G+DGF+A L + Sbjct: 417 GILPEWIDSAGDLRTEP--------ATHGVDGFYAARLIK 448 >gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301] gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301] Length = 405 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 109/414 (26%), Positives = 175/414 (42%), Gaps = 38/414 (9%) Query: 50 RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108 +V +R +DA++D + ++ L+ +L++ + Q+ YL+ + A V V Sbjct: 2 TELVYGCVRRQRTLDALIDLLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETV 61 Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENF 159 + AK+ + VN+ILR+ R+ E A P+W + + Sbjct: 62 QLAKQLGLG-GLSGAVNAILRQYLRQSEERDPLPLPSDPIAALAIHQSFPDWLVQLWSDR 120 Query: 160 YGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP-------TGGIRLKELP 209 G + + P DL + + L AV + +RL + P Sbjct: 121 LGLDEAEFLCHWFNQPPSNDLRINPLRTERSQVQAALEAVGIRSTPDPQLPQALRLIDPP 180 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKV 266 I LPGF EG W VQD+SA + L +VLD+CAAPGGK+ L + +V Sbjct: 181 GPIRQLPGFDEGWWMVQDSSAQLIAHLVDPQPGETVLDVCAAPGGKSTHLAELMGDRGQV 240 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 A D S +RL K++ N RL L + +D D +LVDAPCS G + RH Sbjct: 241 IACDSSAKRLRKVQENAQRLQLSSITTRAIDGRQI-KGIQADRILVDAPCSGLGILHRHA 299 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 D W + D + + A Q ++L + +KP G +V++ C+L ++E V+++ L+ P Sbjct: 300 DGRWRQSPDSVAELAQLQSEILDAAAACLKPAGTLVYATCTLHPAENEAVIEQFLQRHPD 359 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G +RI P DGFF L+R Sbjct: 360 WQM-----APLAADSPFQAWAEANGTLRIWPH--------RHDRDGFFGARLQR 400 >gi|304313374|ref|YP_003812972.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium HdN1] gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium HdN1] Length = 492 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 135/460 (29%), Positives = 207/460 (45%), Gaps = 35/460 (7%) Query: 1 MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + R + +LS V+ R++ L+ SA L + ++ L + I Sbjct: 1 MTQAAHVRATLAQVLSQVLPLGRQQAESLRALNDLL-PSAQERLPEAERKLAQEIAYGVC 59 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 R+ R+D +L+ +L L + L LL V + Q+ Y + D+A + VE A R E Sbjct: 60 RWFTRLDKLLNPLLEHPLKARDRDLHALLLVGLYQLYYTRIPDHAAISETVE-ATRQLEK 118 Query: 118 RHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 ++LVN ILRRV REK +L A S P+W ++L+ + + +A Sbjct: 119 PWASRLVNGILRRVQREKSQLETALPDSDAIRSAHPQWLVDKLKAAWPDHYAAML-EANN 177 Query: 174 SPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWW 224 + L V E + +L A + L ++V LPG+AEG + Sbjct: 178 QQAPLTLRVNLRKQSREQYLTELRAKNINASPCSLSPAGIRLERSANVVELPGYAEGWFS 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNL 283 VQD +A + QL VLD CAAPGGKT L + A+D RR E++ NL Sbjct: 238 VQDEAAQLAAQLLAPHTGERVLDACAAPGGKTTHLLEHADIHCVAIDADPRRCERIHQNL 297 Query: 284 DRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL L AE + +D FD +L+DAPCS+TG IRRHPD+ W R DI Sbjct: 298 ERLQLSAE-VHALDLQSYATQPEVMPFDRILLDAPCSATGIIRRHPDIKWLRRQSDINAL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q LL + +K GG ++++ CS+ Q+++ +V + L +P + + Sbjct: 357 AEQQLSLLKTAFALLKEGGTLLYATCSVLPQENDRIVARFLAETPAAILQALQFPSQIPP 416 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ P G DGFF LRR Sbjct: 417 ANGIPTPT---GFQLLP--------TVQGHDGFFYAMLRR 445 >gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662] gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662] Length = 448 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 99/459 (21%), Positives = 187/459 (40%), Gaps = 39/459 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L + +K + F ++D+ + TL ID Sbjct: 3 NPRELALDVLMKIDKKEELSHIAIGETLEKYQFS--EKKDRAFFTRLCQGTLERRLTIDY 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V+D + + + K ++ LLR+ QIL++D + D A + V+ AK+ + + V Sbjct: 61 VIDLYSKTKVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKK-RGFSKLSGFV 119 Query: 125 NSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N +LR + + ++ +PEW Y + I + + P Sbjct: 120 NGVLRTISRQKQEIPFPDRNKDFEKYLSVACSMPEWIIRHFLRSYSEAETETIVSSFLEP 179 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQ 226 ++ E L +L + + L F EG + VQ Sbjct: 180 KKTTVSWMESSGSREELIASLEKDGAKVEDGKLLPEALRISHYDFLRRLTSFREGRFIVQ 239 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + + +LD+C+APGGK + +V A D+++ + E L+ N+ Sbjct: 240 DESSMLAGKAADPKEGQKILDMCSAPGGKALYAADKLHGTGQVLARDLTEYKEELLKENI 299 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +R+ DA + + D VL D PCS G + + D+ + + + Sbjct: 300 ERVGFENIRTQIWDARIPDERLAESMDVVLCDVPCSGLGIMGKKQDIKYNLEESALEDLV 359 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L +++VKPGG ++FS C+++ +++EE + + + E L +++ Sbjct: 360 KLQREILKTALTYVKPGGSLLFSTCTINPKENEENFRWLAGQTG--FEPEDLTPFLPETL 417 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ EG+I++ P + DGFF LRR Sbjct: 418 DIKTV--KEGYIQLLPGI--------HPCDGFFIGKLRR 446 >gi|218528533|ref|YP_002419349.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4] gi|218520836|gb|ACK81421.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4] Length = 454 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 171/441 (38%), Positives = 245/441 (55%), Gaps = 11/441 (2%) Query: 4 GMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR + ++ ++ + ++L L L + L RAI + R L Sbjct: 19 GLAARHAAREAVATLLGPARGLALEDALAQAAR---GAGLDAGEAALARAIATASFRRLG 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I A L L LP + L LL AQIL L VAD+A VDL+V AK D + +H Sbjct: 76 FIKAALAARLRDGLPEDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLV 135 Query: 122 KLVNSILRRVSREKIELLQRIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LRR++RE+ + + + P+W R + YG+E I+ A + +D Sbjct: 136 PLVNAVLRRIARERDAIRAQESDPLAHNTPDWLARRWQAAYGEETARRIAIAHLEGAAVD 195 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LTV D E WA +L + L G +RL E+ +++ LPG+AEG WWVQDA+A++PV+L Sbjct: 196 LTVPHDPEIWAERLGGIRLDLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAALPVRLLAP 255 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 ++ V+DLCAAPGGKTAQ+ +GA VTA+D S RLE+L NL+RL L AE + DA Sbjct: 256 VSGERVVDLCAAPGGKTAQMAAAGAAVTAVDRSAVRLERLGRNLERLGLSAEVV-TADAL 314 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCS+TGTIRRHPDV+WT+ D+V+ A QR+LL + +PGG Sbjct: 315 ALPEDAPFDAVLLDAPCSATGTIRRHPDVVWTKSEADVVRLAGLQRRLLDKAARLTRPGG 374 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ V L +P E + + + A + G +R P Sbjct: 375 RLVYCTCSLEPEEGSAQVAAFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSH 431 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + G + G+DGFFA LRR Sbjct: 432 VVGGIGRAGGLDGFFASLLRR 452 >gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11] gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11] Length = 419 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 138/439 (31%), Positives = 219/439 (49%), Gaps = 25/439 (5%) Query: 1 MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + +LL ++ + LL A L+ D+ + + TLR Sbjct: 1 MSNSATAARRSAIYLLDQILGEGR----LLPECLAAGALDRLAPEDRARAQRLTIETLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L + ++ LR+ ++ + A + VV+ VE R +++ Sbjct: 57 LERADRLLADHLRQTP---ALTVHNALRLGTVELCQGE-AAHGVVNAMVEIVGRSRKHGR 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LR+++ + + ++ + +P+W ++ L +G+E V ++ A +D Sbjct: 113 LKGLVNAVLRKIAADGPDAWPKM-RVPRLPDWLRDPLIMAWGQEAVKSMEQAHFLGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +T+K A + LPTG +RL+E + +LPG+ G WWVQDA+A++PVQ+ Sbjct: 172 ITLKPG----AESPDGTNLPTGSVRLQEA-GQVSALPGYKAGGWWVQDAAAALPVQVLAP 226 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLDLCAAPGGKT QL +GA VTALD+S+ RL ++ NL R L A I Sbjct: 227 KPGEKVLDLCAAPGGKTLQLAAAGADVTALDISEARLARVHDNLQRTGLKATVIAADALD 286 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + +DA+L+DAPCS+TGTIRRHPD+ + +D + Q ++L S +KPGG Sbjct: 287 HH---GQYDAILLDAPCSATGTIRRHPDLPFAKDGSEFGGLIALQAQMLAHAWSLLKPGG 343 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL + E V++ L P D ++ EG +R+ PD Sbjct: 344 RLVYCTCSLLPDEGEVQVEEALAQHPDMQINRAALDIAGVERDW---VTQEGGLRLRPDY 400 Query: 420 LEKIDGVSSGMDGFFAVAL 438 GMDGF+ L Sbjct: 401 WSG----KGGMDGFYIACL 415 >gi|94971255|ref|YP_593303.1| sun protein [Candidatus Koribacter versatilis Ellin345] gi|94553305|gb|ABF43229.1| sun protein [Candidatus Koribacter versatilis Ellin345] Length = 432 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 114/451 (25%), Positives = 191/451 (42%), Gaps = 32/451 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +R + +L V R + + LL LS D+ L +V TLR+ Sbjct: 1 MSKN-PSRATAFDILLRVERDQAFASELL----HSDRLNDLSAPDRGLATELVMGTLRWQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +DA++ L + + LR++ Q+ +LD + A V+ +VE KR ++ R Sbjct: 56 STLDALVATQSSQPLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELVKRARK-RS 114 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 N++LR++S+ E+ +A P W R + YG + +IS + Sbjct: 115 AVPFANAVLRKISKLPREIHGDLA----HPAWLVARWRDNYGGDAAESISKYGQTTPETA 170 Query: 180 LTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASAS 231 L + FD +L + RL + F G W+QD ++ Sbjct: 171 LRLPFDAEKRAKVEAELQENGVELAPGRLLNAARRLVSGDLSGTAAFQRGDVWIQDEASQ 230 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLY 289 + L G + +LD CAAPGGKT+ L + AL++ + ++ R +R+ Sbjct: 231 LVALLTG--HGDRILDCCAAPGGKTSVLAERNPSSKIVALELHE---QRARLLRERVRAS 285 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 D+ DA ++ + FD VL D PCS TGT+ R+P++ W +D+ Q +L Sbjct: 286 NVDVQTADATNFRAETAFDCVLADVPCSGTGTLARNPEIKWRLKPEDLADLQQRQIAILR 345 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +S + PGG +V+S CSL+ ++ E VV+ L EL P + P Sbjct: 346 AALSQLAPGGRLVYSTCSLEPEEGEAVVEASLT---DEFELQPAAPELEQFAPAFAIPDP 402 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +R + +GFFA + R Sbjct: 403 QTLVR---GPYLRTIPGIHPCEGFFAAVITR 430 >gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus sp. 18P13] Length = 434 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 107/445 (24%), Positives = 177/445 (39%), Gaps = 37/445 (8%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LL + LD DS L+ + + V A+ + LP +D VL Sbjct: 9 VRLLDKTFGAQGYSNIALDRALRDS---DLNPQQKSRVSALYYGVIERLPELDYVLSRYS 65 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR-- 129 + +++ LLR V Q+ ++ + D A V+ V K+ + + VN++LR Sbjct: 66 KKPPEKLDPTVRNLLRCGVYQLAHMRIPDNAAVNECVNACKKLRYT-SASGFVNAVLRGF 124 Query: 130 ----RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 + + R P+W ++L + YG+ + A+ + + L Sbjct: 125 VRDGKQIPVPKDPALRRQVQYCAPDWLIKQLSSEYGESVMDALLTDALGRPPVTLRRNPL 184 Query: 186 IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + L A P + + FA+G++ VQD ++ + Sbjct: 185 AGDASAFLRAMGEISVEKHPLLPDCYRVQGGDVTRTDAFAQGMFHVQDLASQLCCLALDP 244 Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +VLDLCAAPGGK+ L + ++ A D+ R++ + RLHL Sbjct: 245 QLGDTVLDLCAAPGGKSFTLAELMEDRGQLYAFDLHTNRVKLIAQGAQRLHLQCVHARTG 304 Query: 297 DAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 DA + P+ D VL D PCS G IRR P++ + +D Q K+L +V Sbjct: 305 DASLHNPELPQADRVLCDVPCSGLGVIRRKPEIKY-KDPAAFTGLPPVQAKILENAAHYV 363 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KPGG +V+S C+L + +++ VV L+ P E V + + + Sbjct: 364 KPGGYLVYSTCTLSRAENDGVVDGFLQQHP-EFEGVSFLETLGEPFGNWK-------VTL 415 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P L G DGFF L+R Sbjct: 416 HPGCL--------GSDGFFMAKLKR 432 >gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952] gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952] Length = 449 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 113/468 (24%), Positives = 191/468 (40%), Gaps = 46/468 (9%) Query: 1 MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R ++ LL V + + + L+++D L+ +V T+ Sbjct: 1 MSKTVTKTVRYIAFTLLERVDKGGAYSNLAIKEAIATTQ---LNEKDARLLTELVYGTIG 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 R+D L L + + ++ LLR+SV Q+ +LD V +A+ + AVE AK + N Sbjct: 58 NQLRLDYYLAPFLKKA-KKVDRWVKVLLRMSVYQLHFLDKVPSHAIFNEAVEIAK-YRGN 115 Query: 118 RHFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + VN +LR R + E ++R++ +P W + L G E + Sbjct: 116 VGVGQFVNGVLRQLQRVGVRDVEQIAEPMERVSITYSLPMWLVQALVKQIGLEATAELGA 175 Query: 171 ACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEGV 222 + + P ++ V + T L+ A + L + F G Sbjct: 176 SLMKPSHVSARVDTRVCTMQEALDSLAAEGITAQPSAISPVGLVGEKGFLAGSELFTRGQ 235 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLE 277 +QD S+ + + VLD CAAPGGKT + G +V ALD+ ++ Sbjct: 236 LTIQDESSMLVAPMLAIEPGDKVLDACAAPGGKTTHIATYLDAEKGGEVRALDIHPHKVA 295 Query: 278 KLRCNLDRLHL-YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RLH+ ++DA + FD +LVDAPCS G IRR PD+ + + Sbjct: 296 LIEENAMRLHVETVVHAQQLDARKVSEVFAPETFDRILVDAPCSGIGLIRRKPDIKYQKT 355 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 D Q +L +K GG +V+S C++ ++++E+VV L P + P+ Sbjct: 356 PQDFTNLPKIQLSILESVAPTLKSGGRMVYSTCTIMEEENEQVVAAFLAKHPEFELVEPV 415 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S + + + I P DGFF L++ Sbjct: 416 VSESVRGAI------KDHMLTIYPQAF--------HTDGFFISCLQKK 449 >gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus catus GD/7] Length = 455 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 114/463 (24%), Positives = 200/463 (43%), Gaps = 38/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + +L V ++ LL ++ L +RD+ + + TL + Sbjct: 1 MADNINTRAIVYDMLMSVEKENTPSHLLLSQTL--MKYQYLDKRDRAFISRLFRGTLEYE 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D V+ L + K ++ +LR+SV QIL +D + D A D AV+ ++ + ++ Sbjct: 59 IFLDGVIRQFSSVRLNKIKTPIKAILRMSVYQILKMDHIPDAAACDEAVKLTRK-RGLKN 117 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 + VN +LR +SR K + + +PEW E YG E + Sbjct: 118 LSGFVNGVLRNISRNKEVIHYPDPEKTPAAYLSMRYSVPEWLAEMWLRDYGFEMTAEMGQ 177 Query: 171 ACI--SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGV 222 A + + + ++ L + L + + + ++ FA+G Sbjct: 178 AMLDDQKTTVRVRDSQNMAAVKEALRSEGLHIEEGCMLPEALHLSGYDYLGNVGPFADGR 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 QD SA + G S++D+CAAPGGK+ + +V+A D+++ ++ K+ Sbjct: 238 ITAQDESAMLAAVAAGIAGGESIIDVCAAPGGKSMHMADILKGSGQVSARDLTEAKVLKI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + NL R L DA + P+ + D V+ D PCS G + R D+ + + I Sbjct: 298 QENLKRTGLKNVSAEVKDALVFYPEDAQKADIVMADLPCSGLGVMGRKADIKRSVTPEKI 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR++L +VKPGGI+V+S C++ K ++EE +Q P +E + Sbjct: 358 TALAALQREILSVVQHYVKPGGILVYSTCTVSKAENEENMQWFEEHFPFGLESLDA---- 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + GWI+I P + DGFF RR Sbjct: 414 YIPEKVRNEQTKAGWIQILPGQYQS--------DGFFIARFRR 448 >gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus anaerobius 653-L] gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus anaerobius 653-L] Length = 446 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 112/466 (24%), Positives = 201/466 (43%), Gaps = 49/466 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR ++ +L + + L+ DS L+ +D+ L IV + +D Sbjct: 1 MTARNIAYKVLLDIEKNSNYSNIALNKFLKDSK---LTNKDRGLATEIVYGVVANKRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + +S++ +LR+ V Q+LYLD VADY V+D AV+ K+ +R + Sbjct: 58 YMINKKSKIKVKKMNHSVKIILRMGVYQLLYLDRVADYGVIDEAVKMMKKI--DRRSSGF 115 Query: 124 VNSILRRVSREKIEL------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN+ILR +SREK + + +A +W +R+ + YGKER I A Sbjct: 116 VNAILRNISREKDRILDLDDSYKNLAIKYSYEDWIVDRISDQYGKERTSNILAALSMRPR 175 Query: 178 IDLTVKFDIETWAHKLNAV-----------------MLPTGGIRLKELPESIVSLPGFAE 220 I L + + L+ + E + I + F Sbjct: 176 IFLRINRNKLRDGENLSDLKKYIVDRLEKDGVIVRDRHILEEAIEVENFKQIENKDLFKS 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLE 277 G VQD S+ + + N VLDLCAAPGGK+ + A DV +++ Sbjct: 236 GYISVQDISSMMVARALNPKKNSKVLDLCAAPGGKSCHIGEMMKDSGSVLACDVFDHKIK 295 Query: 278 KLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 ++ +RL L I + FD V+ D PCS G +RR P++ + + Sbjct: 296 LIKAYSNRLGLTNIEACINNAMVINEDYVGAFDYVVCDVPCSGMGIVRRKPEIKYKKKEG 355 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + QRK+L ++K G++++S C++ K+++ E++++ L+ + Sbjct: 356 -VDSLPKIQRKILDNASKYIKKDGVLIYSTCTIFKEENIELIEEFLKDNKEF------KL 408 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ +G++ I PD MDGFF ++++ Sbjct: 409 DSIENLPFERERLDKGYLEIIPD--------RDDMDGFFICRMKKI 446 >gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684] gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684] Length = 479 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 126/464 (27%), Positives = 196/464 (42%), Gaps = 41/464 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L+ V +LD + L RD+ L +V LR +D + Sbjct: 29 ARRIAFDVLTRVDEGG-YSDLVLDAALEANP--GLDPRDRALATELVYGVLRRRGNLDFI 85 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + + + +LLR+ + Q+ YLD + D AVV VE A+R + LVN Sbjct: 86 LKAYSRQPLKKLQPKVLRLLRLGIYQLCYLDRIPDRAVVHSMVELARRC-GLERVSGLVN 144 Query: 126 SILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISPL 176 +LR RE ++ +P W +R YG E +A++++ +S Sbjct: 145 GVLRSYLREPNRVVWPDPRRDTQGWLEHGLSLPHWLAQRWLVQYGAEGAMALAESQLSAP 204 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 + + V + +L + R + + LPG EG + VQD Sbjct: 205 PVTVRVNTLKMTRNAFVAQLKQRDIAAEPTRFAPEGVVLPHAGDLQRLPGREEGWYQVQD 264 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ + L +LD CAAPGGKT L + +++ ALD+ +RLE L+ Sbjct: 265 EASMLIAHLLSVEPGQRLLDGCAAPGGKTTHLAALTDNRSEILALDLHSQRLEILQQGAK 324 Query: 285 RLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + D C FD VL+DAPCS G +RR+P+ W R DI A Sbjct: 325 RLGCQQIRTLACDMTQPCEDLSAGGFDRVLIDAPCSGLGVLRRNPESRWRRKQTDIKVLA 384 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L Q V PGG++++S C+ ++S VV L P+ V+ +N A Sbjct: 385 KTQRQILHQAAELVVPGGLLLYSLCTTTPEESTAVVADFLAHHPMYVQ---VNLANRVPK 441 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 +G + G MD FFA R QP+ Sbjct: 442 HWEGLFDDDGQL-------VTRTGEHGPMDCFFAAGFYR--QPE 476 >gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9] gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9] Length = 444 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 113/461 (24%), Positives = 195/461 (42%), Gaps = 42/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ +L V+ K + R L + D+ ++ +V + +D Sbjct: 1 MKPRKIAYKILQEVLSKEAYANISFNKHLK---GRELKEVDRDFIKKLVFGVIERKYTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + K L + + Q+LY+D V YA ++ V AK + A Sbjct: 58 FILSFFVKKPADEKSKIF---LEMGLYQLLYMDKVPSYAAINETVNIAKNVLGIKR-ANF 113 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 +N++LR REK +++ P+W ERL N Y +E+ A+ + Sbjct: 114 INAVLRSYEREKEKVIFPDKERDLRKYLMVTYSYPDWIVERLLNNYDEEKAEALLKSLNE 173 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQ 226 I V DIE L + + L ++ S + EG+ ++Q Sbjct: 174 KPKICYRVNTLKIDIEDLKKLLVSRGIVYKKGYYLEEALYIDIKNPESHQLYKEGLIYIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + ++ +VLD+CAAPGGKT + + + V A D+ RLE ++ N Sbjct: 234 DEASMLVSKILNPNEGETVLDVCAAPGGKTTHIAQLMKNTGNVVAFDLHPHRLELIKENC 293 Query: 284 DRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVL-WTRDTDDIVKS 340 RL + D+ K D VL D PC+ G IR+ PD+ +I + Sbjct: 294 KRLGITNVKAEAFDSTFVNDKYLEKADKVLADVPCTGIGIIRKKPDIKLKNYTKSEISQL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+L +VK G +V+S C++ +++ V+ K L+ P LV + + Sbjct: 354 VETQYKILDSSSKYVKKDGFLVYSTCTIGVEENHNVIMKFLKEHPN-FRLVDIKAEMPSG 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ A G+I+ TP + G+DGFF L+R+ Sbjct: 413 LNIETA--SLGYIQTTP--------LEHGIDGFFISKLKRI 443 >gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1] gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1] Length = 445 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 199/463 (42%), Gaps = 43/463 (9%) Query: 1 MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G R + +L V + + LL+ + D L+ + T++ Sbjct: 1 MSKGKKTVREAALDVLESVEKNQSYSNLLLNHAIEKY---GIKGPDTGLLTELTYGTIQR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D L + + ++QLLR+S+ Q++YLD + D AV+ AVE KR + ++ Sbjct: 58 RMTLDFYLAPFINKKIES---WVRQLLRLSLYQMIYLDKIPDRAVLFEAVEIGKR-RGHK 113 Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 A ++N ILR + R+ + ++R+A + P+W +R +G E+ + + Sbjct: 114 GIASMINGILRSIQRKGVAAIESIEDPVERLAIETSHPQWLVKRWTEQFGIEKTREMCET 173 Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVW 223 I+ + V + +L L + L ++ F +G+ Sbjct: 174 NITAPHQSARVNTLRITVDELIDRLTEEGLTVQKSSIVPNAIISLKGNLAKTAAFKDGLL 233 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD S+ + + +VLD CAAPGGKT + + KV ALD+ K +++ + Sbjct: 234 TIQDESSMLVGHSLDVHEDFTVLDSCAAPGGKTTHIAQLMEGKGKVFALDLHKHKIKLIN 293 Query: 281 CNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N RL L + D+ + FD +LVDAPCS G +RR PD+ +T+ D+ Sbjct: 294 ENASRLGLGNIESKAHDSRRAGELFAAESFDRILVDAPCSGLGVLRRKPDIKYTKKESDL 353 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q ++L +K GG++V+S C++D+ +++ V++ L + E P + Sbjct: 354 ESLQTIQLQILEAVSPLLKKGGLLVYSTCTVDRNENQGTVKEFLDGNK---EFQPFPLTH 410 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P G DGFF ++ Sbjct: 411 LPETVQPFVEG--NMLQVFPQDF--------GGDGFFISCFKK 443 >gi|262195801|ref|YP_003267010.1| sun protein [Haliangium ochraceum DSM 14365] gi|262079148|gb|ACY15117.1| sun protein [Haliangium ochraceum DSM 14365] Length = 501 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 122/470 (25%), Positives = 178/470 (37%), Gaps = 46/470 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +L V ++ T L S L RD+ LV + +LR R+D Sbjct: 44 VRDVAHRVLRQVAKEGAFATLALGAALKSS---GLDARDRALVTELCYGSLRQQMRLDRA 100 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + + +LRV+ +IL+L V +A V+ AV A+R + FA N Sbjct: 101 LAALTPRGLGKLDAATLSILRVAAYEILFLERVPAHASVNSAVRAARR-LGGQRFAGFAN 159 Query: 126 SILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR ++ + E +A P W + L + A P + Sbjct: 160 GVLRTLAREGEPALPPESEPRAHLAIAWSTPGWILDALSEMVPAAELSEAVAAFNQPAPL 219 Query: 179 DLTVKF-DIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQDAS 229 L +E A +L A+ G L E FAEG + VQD Sbjct: 220 TLRAHGVSVEALAERLRALHPQGGFSLSPLAPQALLAEGLGDPELSQAFAEGQFAVQDLG 279 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + L VLD CA GGK+A L + +V A D S +L RL Sbjct: 280 AQLAAHLLAPAAGARVLDACAGVGGKSAHLAALVGPEGRVDAADRSAGKLRLCAEGAARL 339 Query: 287 HLYAEDIIEMD--------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +D + +DAVL+DAPCS G +RRHP+ D+ Sbjct: 340 GADNVHTAALDLASDDAVAWAQAGLAEAYDAVLLDAPCSGMGVLRRHPEAKLRLQPGDVG 399 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +LL + V+PGG++V+S C+ + + + L P + A Sbjct: 400 EMAALQARLLDAVSARVRPGGVLVYSVCTFTRAEGPAQIAAFLDRRDEFALEAPPSPAES 459 Query: 399 KSIDMAMALSPE------GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A L+ E G IR P G DGFF LRR Sbjct: 460 GVDWAAAGLTSEAAGAGAGTIRTWPH--------RHGADGFFLARLRRRA 501 >gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541] gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541] Length = 448 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 104/457 (22%), Positives = 183/457 (40%), Gaps = 42/457 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ + V L + ++RD+ + +V ++ ID + Sbjct: 12 VRELAMQTILRVHGAGAYANVALAETLRAARP---TERDRRFLTELVYGVVKAGDTIDYM 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + L + + +++ LLR+ QI ++D + A + AVE AK+ R A VN Sbjct: 69 IGKYVS-DLRKAQPAIRTLLRLGFYQIFFMDKIPVSAACNTAVELAKKYGR-RGAASFVN 126 Query: 126 SI-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + R + K + +A P W ER YG ER A+ + + Sbjct: 127 GVLRTALREPERAALPKGRDARSLALREQHPLWMTERWVRAYGYERAEALCRCNNTSAPL 186 Query: 179 DLTVKF---DIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + K A + + ++ L EG+ VQD S Sbjct: 187 SVRTNTLRISRTQLIEKFKAAGVKARTSAWVPEGVILRAHGALNVLAPLHEGLAQVQDES 246 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + ++V+D CAAPGGKT + + ++ A D+ + ++ ++ N RL Sbjct: 247 SMLVTHVLAPEPGMTVIDACAAPGGKTTHIAQRMENCGRILAFDIYEEKIRRIERNAKRL 306 Query: 287 HLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + +DA + D VLVDAPCS G +RR PD W + D Q Sbjct: 307 GISIIEAAVLDAREIGAHYKEQADRVLVDAPCSGLGVLRRKPDARWRKSASDRKTLPPLQ 366 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R++L V+ GG++V+S C+++ ++ VV+ L++ P S + Sbjct: 367 REILASAAQTVRKGGVLVYSTCTMEDCENTAVVEHFLKTHPDF-------SLEETGAFLP 419 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E ++I P + G DGFF +RRL Sbjct: 420 GKKRSEQMVQIMP--------ETDGPDGFFIARMRRL 448 >gi|254559138|ref|YP_003066233.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Methylobacterium extorquens DM4] gi|254266416|emb|CAX22180.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Methylobacterium extorquens DM4] Length = 454 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 171/441 (38%), Positives = 245/441 (55%), Gaps = 11/441 (2%) Query: 4 GMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR + ++ ++ + ++L L L + L RAI + R L Sbjct: 19 GLAARHAAREAVATLLGPARGLALEDALAQAAR---GAGLDTGEAALARAIATASFRRLG 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I A L L LP + L LL AQIL L VAD+A VDL+V AK D + +H Sbjct: 76 FIKAALAARLRDGLPEDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLV 135 Query: 122 KLVNSILRRVSREKIELLQRIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LRR++RE+ + + + P+W R + YG+E I+ A + +D Sbjct: 136 PLVNAVLRRIARERDAIRAQESDPLAHNTPDWLARRWQAAYGEEAARRIAVAHLEGAAVD 195 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LTV D E WA +L + L G +RL E+ +++ LPG+AEG WWVQDA+A++PV+L Sbjct: 196 LTVPHDPEIWAERLGGIRLDLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAALPVRLLAP 255 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 ++ V+DLCAAPGGKTAQ+ +GA VTA+D S RLE+L NL+RL L AE + DA Sbjct: 256 VSGERVVDLCAAPGGKTAQMAAAGAAVTAVDRSAVRLERLGRNLERLGLSAEVV-TADAL 314 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCS+TGTIRRHPDV+WT+ D+V+ A QR+LL + +PGG Sbjct: 315 ALPEDAPFDAVLLDAPCSATGTIRRHPDVVWTKSEADVVRLAGLQRRLLDKAARLTRPGG 374 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ V L +P E + + + A + G +R P Sbjct: 375 RLVYCTCSLEPEEGSAQVAAFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSH 431 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + G + G+DGFFA LRR Sbjct: 432 VVGGIGRAGGLDGFFASLLRR 452 >gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae bacterium 9_2_54FAA] Length = 430 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 205/458 (44%), Gaps = 47/458 (10%) Query: 1 MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ N R +++ L V+ + SL+ +L + +S++D+ L++ + LR Sbjct: 1 MKNTPYNLRAIAAKALGSVLDQGQSLSTVLPALSKE-----VSEKDRALLQELCFGVLRV 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 LP+++ + ++ L K+ L L+ V + Q++Y + +A + V A K + Sbjct: 56 LPQLEWYIQQLMAKVLTGKQRPLHYLIMVGIYQLVYTRIPPHAALAETVNGAVALKRPQ- 114 Query: 120 FAKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 L+N + +R + E Q + P W +RL+ Y ++ +I DA Sbjct: 115 LKGLINGVLRQFQRQEDQLKERAQNNECRFLHPSWLLKRLQQAYPQQW-ESIVDANNQRP 173 Query: 177 YIDLTV---KFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 + L V + + L + E + LPGF +G VQD Sbjct: 174 PMWLRVNRLHHSRDEYLALLAKAEINAFAHPQFPDAICLEEASPVGRLPGFEQGWVTVQD 233 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDR 285 ASA V L N +LDLC APGGKT ++ A V A+DV + RL +++ NL R Sbjct: 234 ASAQHCVDLLDPQNGEQILDLCCAPGGKTTHILEAAPKAHVLAVDVDENRLRRVKENLHR 293 Query: 286 LHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L AE + D +C K FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 LQQQAE-VKCGDGRYPEKWCGDKQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAA 352 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q++++ +K GG++V++ CS+ +++ + +++ L P ++ + Sbjct: 353 LQKEIIEAIWPHLKSGGVMVYATCSVLPEENAQQMREFLSRHPEAQLMITGDQKNPG--- 409 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + DGFF L + Sbjct: 410 ------------------QQHLPHAQDGDGFFYAKLIK 429 >gi|126727795|ref|ZP_01743625.1| ribosomal RNA small subunit methyltransferase B, putative [Rhodobacterales bacterium HTCC2150] gi|126702922|gb|EBA02025.1| ribosomal RNA small subunit methyltransferase B, putative [Rhodobacterales bacterium HTCC2150] Length = 423 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 155/437 (35%), Positives = 219/437 (50%), Gaps = 23/437 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR + L+ V+ + LT L FR L D+ + TLR + Sbjct: 8 KEGLIARRAAVRLIDEVLENQRPLTDLTSN------FRALPAADKARAMRLAMTTLRNVG 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R D VL L ++ +LR++V +I + DYAVVD AV ++ + + HFA Sbjct: 62 RADQVLIPYLRKPPLG---TVMNILRLAVTEICHEGAQDYAVVDSAVAMTRKLRNSSHFA 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR+V+R+ + + +P+W + L YG + + +I A +P +DLT Sbjct: 119 GLVNAVLRKVARDGQAAWDK-ETDTELPDWIRLPLIKAYGMKGIESIEAAHAAPPPVDLT 177 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 L MLP G +RL + I LPGF G WWVQDA+A+ PV Sbjct: 178 F---KNAPTEGLVGEMLPNGSMRLSDS-GQISILPGFETGDWWVQDAAATYPVLALAAQK 233 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+CAAPGGKT Q+ SGA VTA+D S RL+ + NL R L AE + DAFD Sbjct: 234 GERVLDMCAAPGGKTMQMAASGAHVTAVDQSAERLKLVHENLARTGLDAEVV-VADAFDL 292 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +DA+L+DAPCS+TGT+RRHPD+ + +D D+ Q ++L ++ +KPGG + Sbjct: 293 TEGG-YDAILLDAPCSATGTLRRHPDLPFVKDGKDVGAIVALQGRMLDHALTLLKPGGRI 351 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL Q+ E VQ L L P S + EG R+ PD Sbjct: 352 VYCTCSLFPQEGEIQVQTALERHKGLKVLEPDTSIGGLD---PKWRTSEGGYRLRPDFWA 408 Query: 422 KIDGVSSGMDGFFAVAL 438 GMDGF+ L Sbjct: 409 D----KGGMDGFYFAVL 421 >gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2] gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2] Length = 455 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 116/459 (25%), Positives = 195/459 (42%), Gaps = 45/459 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ +L + +L +L+ + L+ RD+ L AI+ TLR+ +D + Sbjct: 16 PRFLALTILIENESSKFTLDKILERY--SAQLESLAHRDRALANAIIYGTLRWKEHLDWL 73 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L + + ++ LR ++ Q +++D + A + N A VN+ Sbjct: 74 ITPFSKRPLDQIEPAICYTLRTALYQTVFMDKIPVSAAVNTAVNAAKKLSNTGAAGFVNA 133 Query: 127 ILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISPLY 177 +LR+ + +++ + IP W R +G + +A+ DA + Sbjct: 134 VLRKATTRYMDVAMPDSKKDPALFISKSQSIPLWLSRRWIRRFGLDASIALLDAINTIPP 193 Query: 178 IDLTVKF---DIETWAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 I L D + A L G+ + + F EG++ VQD Sbjct: 194 ITLRANTLRTDRASLATALEPHVETIVPTFHTPDGLSVTRPRTPLHLTTAFKEGLFQVQD 253 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 + I L +LD CA GGKT + + + K+ A D+ R+L L + Sbjct: 254 EATQIVTTLLAPQPGERILDACAGLGGKTGHMGQIMNNQGKIEAWDLDARKLAVLGNEMK 313 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + +MDA D P FD VLVDAPC+ G +RR+PD W R DI + A Sbjct: 314 RLGITNVTTKQMDALDIDPAECNTPFDRVLVDAPCTGLGVLRRNPDARWRRTLGDIKRLA 373 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+++L VKPGGI+V++ CS + +++E V+ L ++ LVP + Sbjct: 374 DLQKRILNNLADLVKPGGILVYAVCSCEPEENEGVIDWFL-NNQKSFALVPQSHDLA--- 429 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +G + P L GMDGFFA +++ Sbjct: 430 ------SQDGIFKTYPHPL--------GMDGFFAATMKK 454 >gi|240137127|ref|YP_002961596.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Methylobacterium extorquens AM1] gi|240007093|gb|ACS38319.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Methylobacterium extorquens AM1] Length = 454 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 167/441 (37%), Positives = 243/441 (55%), Gaps = 11/441 (2%) Query: 4 GMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR + ++ ++ + ++L L L + L RAI + R L Sbjct: 19 GLAARHAAREAVATLLGPARGLALEDALAQAAR---GAGLDAGEAALARAIATASFRRLG 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I A L L LP + L LL AQIL L VAD+A VDL+V AK D + +H Sbjct: 76 FIKAALAARLRDGLPEDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLV 135 Query: 122 KLVNSILRRVSREKIELLQRIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LRR++RE+ + + + P+W R + YG++ I+ A + +D Sbjct: 136 PLVNAVLRRIARERDAIRAQESDPLAHNTPDWLARRWQAAYGEDAARRIAVAHLEGAAVD 195 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT+ D + WA +L + L G +RL E+ +++ LPG+AEG WWVQDA+A +PV+L Sbjct: 196 LTIPHDPDIWAERLGGIRLDLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAGLPVRLLAP 255 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + V+DLCAAPGGKTAQ+ +GA VTA+D S RLE+L NL+RL L AE + DA Sbjct: 256 VPGERVVDLCAAPGGKTAQMAAAGAAVTAVDRSAARLERLGRNLERLGLSAEVV-TADAL 314 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCS+TGTIRRHPDV+WT+ D+++ A QR+LL + +PGG Sbjct: 315 ALPEDAPFDAVLLDAPCSATGTIRRHPDVVWTKSEADVIRLAGLQRRLLDKAARLTRPGG 374 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CSL+ ++ V L +P E + + + A + G +R P Sbjct: 375 RLVYCTCSLEPEEGSAQVAAFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSH 431 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + G + G+DGFFA LRR Sbjct: 432 VVGGIGRAGGLDGFFASLLRR 452 >gi|86139371|ref|ZP_01057940.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. MED193] gi|85823874|gb|EAQ44080.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. MED193] Length = 420 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 146/440 (33%), Positives = 222/440 (50%), Gaps = 22/440 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G AR + +LL V+ + LL Y A L+ D+ + + TLR L Sbjct: 1 MSDGTQARRTAIYLLDQVLGEGR----LLAECYAAGALERLTPEDRARAQRLTLQTLRSL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D VL L + P ++Q +LR+ ++ + A + VV+ V + + + Sbjct: 57 ERADRVLQKHLKKATP---LTVQNVLRLGTVELCH-GAAAHGVVNDMVAIISKHRRHGKL 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR+V+ + ++ + +P+W ++ L +G E +L I A +D+ Sbjct: 113 KGLVNAVLRKVAEQGQAEWAKL-RVPRLPKWLRKPLVEAWGAEAMLEIEAAHYEGAPLDI 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T K + L V LPTG RLK + +L G+ G WWVQDA+A++P Q+ Sbjct: 172 TGKRGAD--LTALGGVALPTGSHRLKNA-GQVSALAGYEVGDWWVQDAAAALPAQMLQAQ 228 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + +LDLCAAPGGKT Q+ SGA VTA+D S R+E+L+ NL R L A+ ++ Sbjct: 229 SGERILDLCAAPGGKTMQMAASGASVTAVDTSASRMERLQENLTRTGLAADLVV---GDA 285 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FDAVL+DAPCS+TGTIRRHPD+ +D Q ++L S VKPGG Sbjct: 286 LEQRGQFDAVLLDAPCSATGTIRRHPDLPHAKDGSAFGALIELQAQMLAHAWSLVKPGGR 345 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VF CSL + E V++ L P + +A + ++ EG +R+ PD Sbjct: 346 MVFCTCSLLPDEGECQVEEALEMFPDMSVDRDVLAALGVD---SAWITEEGGLRLRPDYW 402 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 403 AE----QGGMDGFYMALLRK 418 >gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187] gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187] Length = 433 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 122/456 (26%), Positives = 202/456 (44%), Gaps = 41/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ ++ V+ + SL+ L + A +L++ +D+ L++ I TLR+L R++ Sbjct: 1 MKIRATAAKVIFQVVEQGQSLSSALPV-----AQQLIAAKDRALLQEICYGTLRWLNRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + D +L L K SL L+ + Q+ Y + +AV+ V A F KL+ Sbjct: 56 FIADQLLDRQLKGKHRSLHYLILAGLYQLFYTRIPPHAVLAETVN-ASGLLNGDSFRKLI 114 Query: 125 NSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI-SPLYID 179 N +LR R++ + P W ++++ V + P+++ Sbjct: 115 NGVLRNAQRQQEELLQAADKNEPTRFSYPRWLLKKIKQSCQYGYVSVLQAGNEYPPMWLR 174 Query: 180 LTV-KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + K + + +L AV + L E + LPGFA+G VQDA+A Sbjct: 175 VNLSKQSRDEYQRQLAAVEIQSTPHASCESALLLEKACDVSKLPGFADGACSVQDAAAQH 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLY 289 L N +LD CAAPGGKTA ++ ++ A+D RL ++ NL R+ L Sbjct: 235 AAWLLDPQPNELILDACAAPGGKTAHILERQPALKQLVAVDSDANRLSRVAENLQRIQLE 294 Query: 290 AEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A I + FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q + Sbjct: 295 ATLINGDASHPEQWWQGPQFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAELAHLQHDI 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG ++++ CS+ ++ ++ L + + VPLN Sbjct: 355 LNAMWQQLKPGGTLLYATCSILSDENSSQIKSFLERTADAIH-VPLNEKDTALQP----- 408 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +I P MDGFF L + + Sbjct: 409 ----GWQIHPG--------EQHMDGFFYAKLTKQVT 432 >gi|77917857|ref|YP_355672.1| Sun protein [Pelobacter carbinolicus DSM 2380] gi|77543940|gb|ABA87502.1| Sun protein [Pelobacter carbinolicus DSM 2380] Length = 451 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 188/462 (40%), Gaps = 40/462 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ +L V LD A + RD+ L +V LR+ R+D Sbjct: 6 PRHIAFDILDKV-HNGAFADLALDSALQ--ALPDMDVRDRALATELVYGVLRYRGRLDFA 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + + ++ LLR+ QIL LD + ++A V VE A+R K + +N Sbjct: 63 LQQLCRKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKL-QRATGFIN 121 Query: 126 SILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 ILR + + L + + +P W R + +G E A++ A + P Sbjct: 122 GILRGLVRQAAQLPWPDRQRDPLDYLEHVLSLPRWLAARWLDEFGAEEACALAQAMLKPA 181 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQDA 228 + E LNA R I L G EG++ +QD Sbjct: 182 PYAIRTNTLKIQREALLATLNASDCDAVPTRFVPEGIYIRQGETRHLSGHTEGIFQLQDQ 241 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 ++ + L +LD CAAPGGKT + + A++ ALD+ +R++ + +R Sbjct: 242 ASMLISHLLNPQPGERILDACAAPGGKTTHMAALTDNRARIVALDLHPQRVDLITRGANR 301 Query: 286 LHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + D FD +LVDAPCS G +RR+P++ W R D+ + A Sbjct: 302 LGCQGIEGHAWDLTGVPDFLEPASFDRILVDAPCSGLGVLRRNPEIRWRRKPADLKEMAR 361 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR +L ++PGG +V+S C+ ++++ V++ P E + Sbjct: 362 IQRAILGNVAPLLRPGGRLVYSLCTFSPEETQNVIRAFTNEHP---EFTRCDLRNETPAA 418 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +G +R P MD FFAVA + QP Sbjct: 419 WHALFDRQGALRTLPQH-------HDDMDAFFAVAFEK--QP 451 >gi|254486947|ref|ZP_05100152.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101] gi|214043816|gb|EEB84454.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101] Length = 423 Score = 250 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 143/441 (32%), Positives = 225/441 (51%), Gaps = 21/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G+ AR + +LL ++ + L+ L D+ + + TLR Sbjct: 1 MSDTGVQARRSAVYLLDMILGEER----LMSELLAAGVLDKLPPDDRARAQRLALDTLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + R D +L L P +++ LRV ++ A + VV+ VE K+ H Sbjct: 57 MERADRLLQKHLSKYPP---LTVRNALRVGTVELCQGG-AAHGVVNAMVELVATHKKLGH 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L N++LR+++ E E + +P+W + L +G E + I A + +D Sbjct: 113 LKGLTNAVLRKIAAEGPEAWAAL-RSPRLPKWLRGPLVEAWGAEAITGIEAAHFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT K D A + +LPTG +R+ + + ++PGFAEG WWVQDA+A++PV++ Sbjct: 172 LTAKGDPAVLAEAVGGSVLPTGSVRVMDA-GQVTAMPGFAEGDWWVQDAAAALPVKILAP 230 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLDLCAAPGGKT QL +GA+VTA+D SK R+++++ NL R+HL A+ ++ Sbjct: 231 QKGEAVLDLCAAPGGKTMQLAAAGAQVTAVDSSKPRMQRVKENLARVHLPAKTVV---MD 287 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + F A+L+DAPCS+TGTIRRHPD+ +D + + Q +L+ S + PGG Sbjct: 288 ARAFEGKFSAILLDAPCSATGTIRRHPDLPHAKDGSEFGELIELQAELIDHAWSLLNPGG 347 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E V + L V ++ ID +S EG +R+ PD Sbjct: 348 RLVFCTCSLLPDEGEVQVDEALERHSDMS--VDQSALSVPGID-PSWISSEGGLRLRPDY 404 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 405 WADL----GGMDGFYIACLRK 421 >gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp. 3_2_56FAA] gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp. 3_2_56FAA] Length = 448 Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 105/459 (22%), Positives = 191/459 (41%), Gaps = 39/459 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L + +K + F ++D+ + TL ID Sbjct: 3 NPRELALDVLMKIDKKEELSHIAIGETLEKYQFS--EKKDRAFFTRLCQGTLERRLTIDY 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V+D + + K ++ LLR+ QIL++D + D A + V+ AK+ + + V Sbjct: 61 VIDLYSKTKERKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKK-RGFSKLSGFV 119 Query: 125 NSILRRVSREKIELLQRIAGISI---------IPEWFKERLENFYGKERVLAISDACISP 175 N +LR +SR+K E+ +PEW Y +E I + + P Sbjct: 120 NGVLRTISRQKQEIPFPDRNKDFVKYLSVACSMPEWIIRHFLRSYSEEETETIVSSFLEP 179 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQ 226 ++ E L +L + + L F EG + VQ Sbjct: 180 KKTTVSWMESSGSREELIASLEKDGAKVEDGKLLPEALRISHYDFLRRLTSFREGRFIVQ 239 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D S+ + + +LD+C+APGGK + +V A D+++ + E L+ N+ Sbjct: 240 DESSMLAGKAADPKEGQKILDMCSAPGGKALYAADKLHGTGQVLARDLTEYKEELLKENI 299 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +R+ DA + + D VL D PCS G + + D+ + + + Sbjct: 300 ERVGFENIRTQIWDARIPDERLAESMDVVLCDVPCSGLGIMGKKQDIKYNLEESALEDLV 359 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L +++VKPGG ++FS C+++ +++EE + + + E L +++ Sbjct: 360 KLQREILKTALTYVKPGGSLLFSTCTINPKENEENFRWLAGQTG--YEPEDLTPFLPETL 417 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ A EG+I++ P + DGFF LRR Sbjct: 418 DIKTA--KEGYIQLLPGI--------HPCDGFFIGKLRR 446 >gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae] Length = 426 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 111/456 (24%), Positives = 208/456 (45%), Gaps = 47/456 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R + + +++ V+ ++ SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MNKKYNLRSICAQVIAQVIDQKQSLSTVLPEW-----QKNISDKDKSLLQELSFGVLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P ++ + ++ L K+ + L+ V + Q+ + + +A + V+ A K + Sbjct: 56 PLLEWFIQQLITKPLKGKQRIIHYLIMVGIYQLRFTRIPPHASLAETVDGANALKLPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N++ +R + E + P+W E+++ Y + + + P+ Sbjct: 115 KGLINAVLRQFQRQEQILNEKANNNENNYLHPKWLLEKIQQVYPAQWKEILEANNQKPPM 174 Query: 177 YIDLTV-KFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 ++ + + L + + P +I LPGF +G +QD S Sbjct: 175 WLRVNQLYHSTNDYLMLLQQAGIEASLSNDSKFAIKLQKPCAINKLPGFDQGWVTIQDLS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLH 287 A V+L N +LDLCAAPGGKT ++ A V A+D+ + R+++++ NL+R+ Sbjct: 235 AQRCVELLAPKNGEYILDLCAAPGGKTTYILELAPKADVLAVDIDQLRIKRIQENLNRVK 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+A +I D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 295 LHA-RVIVGDGRKPLEWISGAKFDRILLDAPCSATGVIRRHPDIKWLRKPIDIPQLVKLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K+L ++K G +V++ CS+ +++E ++K L P + + Sbjct: 354 YKILEAIWPYLKTNGTLVYATCSILPDENKEQIKKFLFHHP----------------EAS 397 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + E +I P G DGFF +L + Sbjct: 398 LNNNMELGQQILP--------TQRGGDGFFYASLIK 425 >gi|110678030|ref|YP_681037.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114] gi|109454146|gb|ABG30351.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114] Length = 423 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 139/441 (31%), Positives = 216/441 (48%), Gaps = 21/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G+ AR + +LL ++ + L+ L D+ + TLR Sbjct: 1 MADTGLPARRSAVYLLDQILGEGR----LMSELLTAGTLDKLEPEDRARAARLAQDTLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L P +++ LRV ++ A + VV+ VE R K H Sbjct: 57 LERADRILQKHLSKYPP---LTVRNALRVGAVELC-TGTAAHGVVNAMVELVSRHKHYSH 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L N++LR+V+ + + +P+W + L +G + + + A + +D Sbjct: 113 LKGLTNAVLRKVAADGPAAWDAL-RAPRLPKWLRGPLVEAWGADAMARMEIAHFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT K D A +LPTG +R++ + ++PGF++G WWVQDA+A++PV++ Sbjct: 172 LTAKSDASAIAALTGGTVLPTGSVRVENA-GQVSAMPGFSDGTWWVQDAAAALPVRILAP 230 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLDLCAAPGGKT QL +GA+VTA+D S R+ ++ NL R L AE +++ Sbjct: 231 QPGETVLDLCAAPGGKTMQLAAAGARVTAVDDSSVRMGRVAENLARTGLKAEVLVQ---D 287 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCS+TGTIRRHPD+ +D + Q +L+ VKPGG Sbjct: 288 ARATSGTFDAVLLDAPCSATGTIRRHPDLPHAKDGSEFGDLIAMQSELIDHAWDRVKPGG 347 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E V + L ++ +D A + EG +R+ PD Sbjct: 348 RLVFCTCSLLPDEGEVQVDEALERHEDM--RTDADALGVPGVDPAWR-TSEGGLRLRPDY 404 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + G+DGF+ LR+ Sbjct: 405 WSDL----GGLDGFYIAVLRK 421 >gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH603] gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST196] gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH621] gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH621] gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus BDRD-ST196] gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH603] Length = 415 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 106/428 (24%), Positives = 189/428 (44%), Gaps = 37/428 (8%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96 + ++D L+ +V T++ +D L L + ++ LLR+S+ Q+LYL Sbjct: 3 EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKKVE---AWVRVLLRLSLYQMLYL 59 Query: 97 D-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISII 148 D V + A + AVE AKR + ++ + +VN +LR + RE ++R+A + Sbjct: 60 DRVPERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLEEIENPVERLAIATSH 118 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAVMLPT 200 P W + + YG E + + + P V D T + A Sbjct: 119 PMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAVALLADEGIEAKRGEL 178 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 ++ ++ F +G +QD S+ + + +VLD CAAPGGKT + Sbjct: 179 SEDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIA 238 Query: 261 VS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDA 314 KV +LD+ ++ + RL L + + +D ++ + FD +LVDA Sbjct: 239 ERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENVETMALDARKVQEHFANESFDKILVDA 298 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K ++E Sbjct: 299 PCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 358 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 +V+++ L+ P + + ++ EG +RI P DGF+ Sbjct: 359 QVIKQFLQEHPEFEWDTTIKDRMPEKLN---PYIDEGQVRILPHYFA--------TDGFY 407 Query: 435 AVALRRLI 442 LR+ + Sbjct: 408 IACLRKKV 415 >gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae bacterium D16] gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae bacterium D16] Length = 445 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 101/462 (21%), Positives = 181/462 (39%), Gaps = 42/462 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR + L+ R+ L + L R+ L + ++ +D Sbjct: 1 MDAREAALLTLNTCQRQGGWSDGALKKQLAAG---GLEGREAALATQLCFGVVQNEMLLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 + L R + + Q LR+ + Q+L+L + A V+ +VE + +N + Sbjct: 58 FYISKFSNIPLRRMESKVVQALRLGLYQMLFLTKIPQSAAVNCSVELTRTHCKNPRAPGM 117 Query: 124 VNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 VN+ILR + + +L + + + P W E L G E A S Sbjct: 118 VNAILRSLQRNLNQLPTIPQNDLAEYFSILYSHPVWLVEELLPLLGSEGTAEFLQANNSQ 177 Query: 176 LYIDLTVKFDIETWAHKLNAVM---------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + V + + ++ L + +G+++VQ Sbjct: 178 PPMTAMVNTTKAAAQEATELLAEQGVEVTPHPWLENCLILNKTGNLERLDAYGQGLFYVQ 237 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + G + VLD+CAAPGGK+ + + +V + D+ + + ++ Sbjct: 238 DPASRLMALASGAAPGMRVLDMCAAPGGKSFAAAIQMDNQGEVISCDLHPHKKKLIQAGA 297 Query: 284 DRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 DRL L + D + FD VLVDAPCS G IR+ PD+ + +D + Sbjct: 298 DRLGLSIIKPMTADGKVRREEWVSAFDLVLVDAPCSGLGVIRKKPDIRY-KDPKPLEDLP 356 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+ +L +VK GG++++S C++ +++ EVV L P V + Sbjct: 357 QVQQAILENAAGYVKAGGVLMYSTCTILPRENGEVVSAFLEKHPEFVR-------EACEL 409 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 A G I + P + DGFF LR++ + Sbjct: 410 PGAAGRVEAGEITLWPQV--------HQTDGFFICKLRKVGE 443 >gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter turnerae T7901] gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter turnerae T7901] Length = 433 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 119/452 (26%), Positives = 201/452 (44%), Gaps = 42/452 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR+ ++ L V+ K SL D L +RD+ L + + TLR+ R++A+ Sbjct: 4 ARVQAARTLGEVLAKHCSLNKPFDT-----GINKLDERDRGLFQELCYGTLRWYHRLEAI 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +L L K + LL + + Q+ YL V D+A + V A R + + L+N Sbjct: 59 AGELLQKPLRNKDQDVYALLLIGLYQLEYLRVPDHAAISETVN-ASRALKKPWASGLLNG 117 Query: 127 ILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LR R++ ++ ++I+G P W RL+ +G + I A + L V Sbjct: 118 ALRSFQRDREQIFKKISGKPQASFSHPNWLVARLQQSWG-AQASRILHANNQQPPVCLRV 176 Query: 183 K---FDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIP 233 + + KL L + I LPGF+EG+ VQD +A + Sbjct: 177 NLKRQSRDEYLVKLQQAGLQAQPLASSPSAVRLLSPLDIQQLPGFSEGLVSVQDEAAQLA 236 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA 290 L VLD C APGGK+ ++ + ++ LD + R+ ++ NL RL L Sbjct: 237 AYLLALEPGQRVLDACCAPGGKSCHILEAEPALTELVCLDSEQDRMARVEENLARLQLSG 296 Query: 291 EDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D + + FD VL+D PCS+TG IRRHPD+ R DD+ K + Q+ +L Sbjct: 297 ATLTTGDASTCQWWNNQPFDRVLLDVPCSATGVIRRHPDIKLLRREDDLAKLSALQQAIL 356 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG++V++ CS+ +++ E++ + + EL P+++ + Sbjct: 357 NNVWQMLKPGGLLVYATCSVLPEENSELITQFVTDHK-DAELAPMDADWGIEQPAGR--- 412 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + G DGF+ L + Sbjct: 413 -----QLLPQL--------EGPDGFYYARLIK 431 >gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM 20601] gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM 20601] Length = 445 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 116/462 (25%), Positives = 208/462 (45%), Gaps = 43/462 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R + +L + + + L++ + L D+ L+ +V TL+ Sbjct: 1 MKKTQSVREAALEILLKIEKNQSFSHLLINDALKKTKLEAL---DRNLLTELVYGTLQRR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + +LLR+SV Q++YLD V ++A++ A E AK+ + ++ Sbjct: 58 LTLDYYLQTFLKKQPED---WVLELLRMSVYQLVYLDKVPEHAILHEAGEIAKQ-RSHQG 113 Query: 120 FAKLVNSILRRVSREKIE-------LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR + R+ I ++++A + +P W R E +G ++ I A Sbjct: 114 VTKFVNGVLRNLIRQGIPAITDIADPVEQVAIETSLPLWLARRWEKQFGLTQLREIGLAF 173 Query: 173 ISPLYIDLTVK---FDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P + + V E A +L P L ++ + +G+ Sbjct: 174 LVPPHQTIRVNRLEQPREQTAKELGQIDIETTPSPYLDEALIVEKGTVAQTRLYQKGIIS 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ +P ++VLD CAAPGGKT + V ALD+ +++ + + Sbjct: 234 IQDESSMLPAYALQLEEQMTVLDACAAPGGKTTHIAEKMNGTGIVYALDIHEKKTKLIEQ 293 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 DRL L DA ++FD +LVDAPCS G +RR PD+ +++ +DI Sbjct: 294 AADRLGLMNIRTKAYDARKASEVFEPEMFDRILVDAPCSGFGVLRRKPDIKYSKTENDIQ 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q ++L + +K GI+V+S C++DK+++ V++ L + P Sbjct: 354 RLAAIQLEILEEVSQLLKENGILVYSTCTIDKEENATVLKTFLANHPEF------QLERV 407 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L E ++ + P + G DGFF ++R+ Sbjct: 408 QVPKAVAELLTEDYLELLP--------TAIGSDGFFVSSIRK 441 >gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides DSM 2048] gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides DSM 2048] Length = 415 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 106/428 (24%), Positives = 190/428 (44%), Gaps = 37/428 (8%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96 + ++D L+ +V T++ +D L L + ++ LLR+S+ Q+LYL Sbjct: 3 EKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLRKKVE---AWVRVLLRLSLYQMLYL 59 Query: 97 D-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISII 148 D V + A + AVE AKR + ++ + +VN +LR + RE ++R+A + Sbjct: 60 DRVPERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLEEIENPVERLAIATSH 118 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAVMLPT 200 P W + + YG E + + + P V D T + A Sbjct: 119 PMWLVQEWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAVALLADEGIEAKRGEL 178 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 ++ ++ F +G +QD S+ + + +VLD CAAPGGKT + Sbjct: 179 SEDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNKGDTVLDSCAAPGGKTTHIA 238 Query: 261 VS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDA 314 KV +LD+ ++ + RL L + + +D ++ + FD +LVDA Sbjct: 239 ERLDGTGKVMSLDLHAHKVRLIEQQAKRLGLENVETMALDARKVQEHFANESFDKILVDA 298 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS +G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K ++E Sbjct: 299 PCSGSGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENE 358 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 +V+++ L+ P + + ++ EG +RI P DGF+ Sbjct: 359 QVIKQFLQEHPEFEWDTTIKDRMPEKLN---PYIDEGQVRILPHYFA--------TDGFY 407 Query: 435 AVALRRLI 442 LR+ + Sbjct: 408 IACLRKKV 415 >gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266] gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266] Length = 444 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 110/459 (23%), Positives = 198/459 (43%), Gaps = 35/459 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + L + + ++ ++++D+ L +VN LR +ID Sbjct: 1 MNAREAALKALQAIEPGKEKSDRIVHAILDR---ATMNRQDRALTTELVNGVLRMRKKID 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + LQ +LR+ V Q+L+L+ + ++A V V+ A++ K R AKL Sbjct: 58 FIISKFYHHRFEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECVDLARKYKGER-MAKL 116 Query: 124 VNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR+++ + + + + + + PEW R YG+E LA Sbjct: 117 VNGVLRKITPDNVVMDEWLKGCEDMERLSVQYSHPEWLINRWNAVYGRETTLASMTYNNH 176 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-------AEGVWWVQD 227 + ++ + A + + + L + F G VQ+ Sbjct: 177 APLFGFRINT-LKQTPDEFLADPAHSSFPQERCLTGNFFLSKEFAGFEACLKSGKLTVQN 235 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 + + L + VLDLCAAPGGK + + + +TA+D S +LEK R + Sbjct: 236 PTQGVACLLLNPVPESRVLDLCAAPGGKATFMAELMQNKGSITAVDRSSEKLEKTRQHAV 295 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L + I DA + P++ AVL+DAPC+ TG +++ ++ W + + + Q Sbjct: 296 ELGITIIKTICADARSFVPEETPQAVLLDAPCTGTGVLQKRAELRWKLSMEMLQELVTLQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL S + GI++++ CS++ +++E ++ LR P S Sbjct: 356 RELLDHAASILPVNGILLYATCSIEPEENELQIEAFLRRHPEFSRDTSCGSL---PEPFR 412 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 M+ + +G I P L G DG FA LR+ + Sbjct: 413 MSAAEKGSILTLPGELP-------GFDGGFAQRLRKNAR 444 >gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis F0405] gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis F0405] Length = 437 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 127/455 (27%), Positives = 196/455 (43%), Gaps = 38/455 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 MNAR +L V + L+ S LS +D+ V +V T+ Sbjct: 4 KQMNAREQIVRVLEEVFEQGAYSNIALNQALEHSQ---LSDKDRSFVTEVVYGTVARKIT 60 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ L V+ + L LL +S+ Q++YLD + D+A+V+ AV+ AK Sbjct: 61 LEWYLAHVIE-DRTKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVQIAK--CRKEGSE 117 Query: 122 KLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 K VN+ILR+ +R + +P W + L YG+ER I + Sbjct: 118 KFVNAILRKLLREGLPAVDTIKRKNKRYSVEYSLPVWLVKALIEEYGEERACDIFKSLYQ 177 Query: 175 PLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 I + + E A L A L + F EG +QD S+ + Sbjct: 178 RNKSSIRVIDLDEKEELAQLLEATSSLLASSALVKEQGHFAGHSLFKEGRITIQDESSQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-Y 289 + VLD CAAPGGKT ++ KVTALD+ +L+ ++ N +RLH+ Sbjct: 238 VAPALDLQGDEWVLDACAAPGGKTTHLASYLTTGKVTALDLYDHKLKLIQENANRLHVAD 297 Query: 290 AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 ++DA FD +LVDAPCS G IRR PD+ + +++ D V Q Sbjct: 298 KILTKKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLA 357 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L V+ GGI+V+S C++ +++ EVV + L+ P E VPL+ Sbjct: 358 ILDSVCQSVRKGGIIVYSTCTIMGKENFEVVDQFLKKHPN-FEQVPLDHE-------RKD 409 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I ITP++ G DGFF +R+ Sbjct: 410 ILKNDCILITPELY--------GSDGFFISRFKRI 436 >gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396] gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396] Length = 447 Score = 249 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 117/464 (25%), Positives = 198/464 (42%), Gaps = 42/464 (9%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK ++AR ++ L V + SLT + A + + D+ ++A+ R Sbjct: 1 MKRRKTLSARAAAAKTLRAVAEEGRSLTTAMA-----PALEQVEENDRSFLQALCYGACR 55 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK---RDK 115 ++ L +L + K+ + LL + Q+ ++D + ++ V K + Sbjct: 56 HYLTLEHWLGQLLRQPIKAKERDIHFLLLSGLHQLAFMDKPAHVSINETVNVTKELNKLW 115 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + ++ S RR + +P W ++L Y ++ + A + Sbjct: 116 ATKLVNGVLRSFQRRKDELLARSEADPSLRYAMPRWLLDKLSAAYPH-QLDELLAASNAQ 174 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGF-AEGVWWV 225 + L V E + ++L V + E + LPGF G+ V Sbjct: 175 APLTLRVNLQKVQREDYLNQLREVEVGAHSCEWAETGVQCEHAVDVSRLPGFFDAGLCSV 234 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNL 283 QD +A + L N VLD C APGGKTA VTA+DV R + R L Sbjct: 235 QDEAAQLSASLVDPQPNERVLDACCAPGGKTAALLERTPTISVTAVDVDPERQLRTRDTL 294 Query: 284 DRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L A+ D + FD +L+DAPCS+TG IRRHPD+ R ++DI + A Sbjct: 295 QRLQLEADVRTADIGDLQQWWDGTPFDRILLDAPCSATGVIRRHPDIKLLRRSEDIPQLA 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q KLL + +KP G++V++ CS+ K+++E ++++ + + E++P+ Y Sbjct: 355 ELQLKLLRTLWTTLKPEGLLVYATCSILKEENEHIIERFIADA-TDAEVIPIEGKYGIQS 413 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 +++ P V+ G DGFF LR+ PK Sbjct: 414 PFG--------VQLLP--------VTGGHDGFFYARLRKQPTPK 441 >gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus pseudomycoides DSM 12442] gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock3-17] gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock3-17] gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus pseudomycoides DSM 12442] Length = 415 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 106/424 (25%), Positives = 188/424 (44%), Gaps = 37/424 (8%) Query: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99 + ++D L+ IV T++ +D L L + ++ LLR+S+ Q+LYLD V Sbjct: 7 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVE---AWVKILLRLSLYQMLYLDRVP 63 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWF 152 + A + AVE AKR + ++ A +VN +LR + RE ++R++ + PEW Sbjct: 64 ERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSLEEIQNPVERVSVATSHPEWL 122 Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIR 204 + + Y E + + + P V D T + A Sbjct: 123 VQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDKITVEEAIALLEREGVQAKRGDLSEDA 182 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262 ++ ++ F G +QD S+ + + VLD CAAPGGKT + Sbjct: 183 IQIEKGNVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLK 242 Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSS 318 +VT+LD+ ++ ++ RL L + +D ++ + FD +LVDAPCS Sbjct: 243 GTGQVTSLDLHPHKVRLIQQQAKRLELENIETKALDARKVQEHFANESFDKILVDAPCSG 302 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G IRR PD+ ++ D + + Q +L + +K GG +V+S C+++K ++E+V++ Sbjct: 303 FGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKAGGRLVYSTCTIEKIENEQVIE 362 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + L+ P E + + + EG ++I P DGF+ L Sbjct: 363 QFLQEHP---EFEWDTTMKERMPEKLRPYINEGQVQILPHYFA--------TDGFYIACL 411 Query: 439 RRLI 442 R+ + Sbjct: 412 RKKV 415 >gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831] gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 448 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 107/463 (23%), Positives = 206/463 (44%), Gaps = 38/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R +L + + LL+ E R L+++D+ L+ +V +L+ Sbjct: 1 MK--YQLRNTMLDILIRIEKDHGFSNLLLNHELK---QRQLNEKDERLLTEVVYGSLQHQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + S + +Q LLR+S Q++YL+ V D+AV+ +VE AK+ + ++ Sbjct: 56 MTLDYYLSKFVKSK-KKLDIWVQSLLRMSFYQMIYLEKVPDHAVIHESVEIAKQ-RGHKG 113 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + VN +LR + R+ + ++RIA + PEW +R YG E + Sbjct: 114 ISSFVNGVLRSLQRQGVPELTEIKDPIERIAIETSHPEWLVKRWSEMYGMETTANMCRNN 173 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWW 224 + + + ++ E +L + + +I +G Sbjct: 174 LEHHPLSIRIQPLRTSREDVMEELKQSGIECRASIFSSQGIIIEKGNIFRTNLLKDGKIT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S+ + ++ ++VLD C+APGGK ++ + A D+ ++++ + Sbjct: 234 IQDQSSMLVGEMLAVEPEMNVLDSCSAPGGKVTHVAEKMLDKGTIHAFDLHAKKIKLIDE 293 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L L + + DA K FD ++VDAPCS G I P++ + + +DI Sbjct: 294 KATTLQLSSILAQKGDARKLADKYEKESFDRIVVDAPCSGLGVINGKPEIKYEKSEEDIQ 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q+ +L + I +K G++++S C++D +++ +VV++VL++ + Sbjct: 354 RLAKIQQDILNEVIPLLKENGLLIYSTCTVDTEENNQVVRQVLKNHQDISIDLSFRDELP 413 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I A S EG +++ P DGFF L+++ Sbjct: 414 VEIQEAPGWSEEG-LQLFPQDF--------HTDGFFLTRLKKI 447 >gi|322386005|ref|ZP_08059645.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100] gi|321269988|gb|EFX52908.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100] Length = 440 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 194/451 (43%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ SA LS D+ LV +V T+ ++ Sbjct: 10 ARELALEILEEVFEEGAYSNIALNKALKQSA---LSSADKSLVTELVYGTVARKISLEWQ 66 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S+ Q+LYLD + +AVV+ AVE AK R K VN Sbjct: 67 LAHFVE-DRDKLDAWLYILLELSLYQMLYLDKIPQHAVVNEAVEIAK--GRKRGSEKYVN 123 Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176 +ILR++ R+ +R + +P W + L + YG+ER AI + Sbjct: 124 AILRKIERDGAADPITIKRKNKRYSVQYSLPVWLVKVLIDEYGEERAEAIFASLFERNKA 183 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E LNA L + F +G+ +QD S+ + Sbjct: 184 SIRVTDVARKEEIKAVLNADDSLLAPSALVKKQGHFAGHEFFEKGLITIQDESSQLVAPT 243 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGK + ++ ++TALD+ +L +R N +RL L Sbjct: 244 LQIEGYEQILDACSAPGGKAVHMASYLTSGQITALDLYVHKLNLIRQNAERLGLADKITT 303 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 KKLDATKVFETFGPNAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 363 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++ EVV+K L P N + + + Sbjct: 364 VCQSLRKGGIITYSTCTIVSAENFEVVKKFLERHP--------NFEQVRLEHEREDIVKD 415 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 416 GCILITPELY--------GSDGFFISQFRKI 438 >gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella aurantiaca DW4/3-1] gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella aurantiaca DW4/3-1] Length = 438 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 190/456 (41%), Gaps = 38/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR ++ +L+ V L +LD ++ R RD L + T R +D Sbjct: 1 MSARTLAIQVLARVRATDAYLNVVLDTALSEAPPR--DARDTALATELAYGTTRRQLALD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L + + LR+ Q+ Y V A V V QA +D A V Sbjct: 59 YAITRFADRKLDAMEDRVLAALRIGAYQLFYTRVPARAAVAETV-QALKDLGVGRAAGFV 117 Query: 125 NSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N+ILR+ + ++ + ++ P+W ER +G+ER A+ A Sbjct: 118 NAILRKLAALPGAPLPPEDDVAEHLSVRESHPKWLVERWLRQFGRERAEAMLVADNQTPP 177 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + + E + V L + + + G++EG+W VQD Sbjct: 178 VVVRTNTAKVTREALLAQFREVGLEVQPTPVSPVGIVLPSLGRLEDVYGYSEGLWQVQDE 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 +A + N LD+CAAPGGK +V A+D+ +L K+ RL L Sbjct: 238 AAQLVGVYAAIPENARTLDVCAAPGGKACHQAE-THEVVAMDLHANKLPKIVSEAKRLGL 296 Query: 289 YAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + F AVLVDAPCS GT+RRHP++ + R D+ + A QR Sbjct: 297 LSRLRAVAHDATKPYDEALGEFQAVLVDAPCSGLGTLRRHPELRYRRGEADLGRLATLQR 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L V PGG+++++ C+L+ Q+ ++ V LRS P P+ S ++ A Sbjct: 357 RILENCQEVVPPGGLLIYAVCTLEPQEGQDQVDMFLRSHPEWTAEPPVLSGVKLPMNQA- 415 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 W+R P G DGFFA LR+L Sbjct: 416 ------WLRTLPG--------PEGWDGFFAARLRKL 437 >gi|294084660|ref|YP_003551418.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664233|gb|ADE39334.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Puniceispirillum marinum IMCC1322] Length = 446 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 135/434 (31%), Positives = 226/434 (52%), Gaps = 13/434 (2%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 + +R + LL V L L L RD+ VR + LR +I+ Sbjct: 22 LKSRQICYELLCAVEA-GSQLDHALK---AQEDISKLDDRDRRFVRLLATTCLRRRGQIE 77 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 V+ ++ + + +L + Q+L L +A VD VE ++ +R + Sbjct: 78 KVIAPMISRRPFGAQANANLILLMGAVQLLILKTGAHAAVDSTVELMRQSGFDR-LCGMA 136 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N+++RR++RE + I +P+W + +G++ +++ ++P +D++ K Sbjct: 137 NAVMRRLTREGDTRFETTTPIDNLPDWLLQSWNEHWGQDATSKLAEIAMNPPPLDISAKA 196 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + E A L ++ IR + L GFA+G WWVQDA+A++P +L G + + Sbjct: 197 NPEAMASTLEGTLIDNYTIR-RAFDGDPSRLAGFADGEWWVQDAAAALPARLLGDVKSKD 255 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 V+DLCAAPGGKTAQLI +GA VTA+D ++R+++LR NL RL + A + ++D + P Sbjct: 256 VIDLCAAPGGKTAQLIAAGATVTAIDSGRKRIDRLRRNLGRLGMKA-SLKQVDGRQFVPD 314 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 DA+L+DAPCS+TGT+RR PD+L R +DI Q +L + ++K GG +V++ Sbjct: 315 MPVDAILLDAPCSATGTLRRRPDILGRRQPEDIESLQNLQWELATTALGWLKAGGQLVYA 374 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL ++ EE++ ++ + V + P+ A +L+ EG +RI P + I Sbjct: 375 TCSLQPEEGEEMISAIIDAGEDKVVIDPITPDQAGI--FARSLTKEGTLRILPHQYDDI- 431 Query: 425 GVSSGMDGFFAVAL 438 G+DGFFA L Sbjct: 432 ---GGVDGFFAARL 442 >gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock1-4] gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides Rock1-4] Length = 415 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 106/424 (25%), Positives = 188/424 (44%), Gaps = 37/424 (8%) Query: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99 + ++D L+ IV T++ +D L L + ++ LLR+S+ Q+LYLD V Sbjct: 7 IDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLRKKVE---AWVKILLRLSLYQMLYLDRVP 63 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWF 152 + A + AVE AKR + ++ A +VN +LR + RE ++R++ + PEW Sbjct: 64 ERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSLEEIQNPVERVSVATSHPEWL 122 Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIR 204 + + Y E + + + P V D T + A Sbjct: 123 VQEWVSAYDLETAQKMCEVNMVPPVPTARVNVDKITVEEAIALLEREGVQANRGDLSEDA 182 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262 ++ ++ F G +QD S+ + + VLD CAAPGGKT + Sbjct: 183 IQIEKGNVAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLK 242 Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSS 318 +VT+LD+ ++ ++ RL L + +D ++ + FD +LVDAPCS Sbjct: 243 GTGQVTSLDLHPHKVRLIQQQAKRLELENIETKALDARKVQEHFANESFDKILVDAPCSG 302 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G IRR PD+ ++ D + + Q +L + +K GG +V+S C+++K ++E+V++ Sbjct: 303 FGVIRRKPDIKLGKEKGDSERLSTIQLSILEKVAPLLKAGGRLVYSTCTIEKIENEQVIE 362 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + L+ P E + + + EG ++I P DGF+ L Sbjct: 363 QFLQEHP---EFEWDTTMKERMPEKLRPYINEGQVQILPHYFA--------TDGFYIACL 411 Query: 439 RRLI 442 R+ + Sbjct: 412 RKKV 415 >gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903] gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903] Length = 437 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 129/455 (28%), Positives = 199/455 (43%), Gaps = 38/455 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 MNAR +L V + L+ S LS +D+ V +V T+ Sbjct: 4 KQMNAREQIVRVLEEVFEQGAYSNIALNQALEHSQ---LSDKDRSFVTEVVYGTVARKIT 60 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ L V+ + L LL +S+ Q++YLD + D+A+V+ AV AKR K Sbjct: 61 LEWYLAHVIE-DRTKLDPWLYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKRRK--EGSE 117 Query: 122 KLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 K VN+ILR+ +R + +P W + L YG+ER AI + Sbjct: 118 KFVNAILRKLLREGLPAIDTIKRKNKRYSVEYSLPVWLVKALIEEYGEERACAIFKSLYQ 177 Query: 175 PLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 I + + E A A L + + F EG +QD S+ + Sbjct: 178 RNKSSIRVIDLDEKEELAQLFEATSSLLAPSALVKEQGHFAAHSLFKEGRITIQDESSQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-Y 289 + VLD CAAPGGKT ++ KVTALD+ +L+ ++ N +RLH+ Sbjct: 238 VAPALDLQGDEWVLDACAAPGGKTTHLASYLTTGKVTALDLYDHKLKLIQENANRLHVAD 297 Query: 290 AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 ++DA FD +LVDAPCS G IRR PD+ + +++ D V Q Sbjct: 298 KILTKKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKESADFVSLQAIQLA 357 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L V+ GGI+V+S C++ +++ EVV + L++ P E VPL+ Sbjct: 358 ILDSVCQSVRKGGIIVYSTCTIMGKENFEVVDQFLKNHPN-FEQVPLDHE-------RKD 409 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I ITP++ G DGFF +R+ Sbjct: 410 ILKNDCILITPELY--------GSDGFFISRFKRI 436 >gi|295696042|ref|YP_003589280.1| sun protein [Bacillus tusciae DSM 2912] gi|295411644|gb|ADG06136.1| sun protein [Bacillus tusciae DSM 2912] Length = 486 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 125/462 (27%), Positives = 190/462 (41%), Gaps = 39/462 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V +R L +RD L IV TLR+ +D Sbjct: 27 PARRGAFEVLLLVEERRAYSHIALRQVLNR---LGADRRDSALATEIVQGTLRWQRWLDE 83 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + R ++ LR++V Q+ L A +AVV+ AVE K + A V Sbjct: 84 QINAKSRIPIARLDAVVRVTLRMAVYQLYKLRHCAPHAVVNDAVELVKGTQ--PRAASYV 141 Query: 125 NSILRRVSREKIELLQRIAGISI--------------IPEWFKERLENFYGKERVLAISD 170 N +LR + RE+ A S P W ER ++ G E +A+ + Sbjct: 142 NGVLRALEREQQTPSPPRAARSRNAPGNPEELARRTSHPTWMVERWWSWLGPEATIALCE 201 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGV 222 + P + L V + A + +V G R L+ + L F G Sbjct: 202 SNNEPPPLTLRVNLLRSSVAEVMESVREAGGEGRPSPVIPGVLRVSGVDVSRLSTFRSGA 261 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 VQD SA++ VLDLCAAPGGK+A + +VTA+D+ ++ + Sbjct: 262 CSVQDESATLAAWTLQPEPGWEVLDLCAAPGGKSAHLAEWMKGTGRVTAVDIHPHKIPLI 321 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL L + D D +FDA LVDAPCS G +RR P++ W R +DI Sbjct: 322 ERTARRLGLPNVHPVCADGRDAPSLGIFDAALVDAPCSGLGVLRRRPELKWRRRPEDIQD 381 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +LL ++P GI+V++ C++ + +++ VV+ L + +A W Sbjct: 382 LVKLQGELLAAAARALRPDGILVYATCTVCEAENDGVVEAFLAGPGGAAFDLEDPAALWP 441 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 M LS +I P G DGF+ LRR Sbjct: 442 DPLGQMTLSTRFGRQILPFHF--------GGDGFYYARLRRK 475 >gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 429 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 211/454 (46%), Gaps = 41/454 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ + R +++ ++S V+ K SL+ +L + +D+ L++ + TLR L Sbjct: 1 MKNTYHLRAIAAQIISQVLDKGRSLSVVLPEVQNHVPY-----KDKALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++ + ++ L KK L LL V + Q++Y + +A++ V+ A K + F Sbjct: 56 PRLEHCVKHLMTRPLNAKKRLLHFLLMVGLYQLIYTRIPPHAILSETVKAAAVLKYPQ-F 114 Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLY 177 L+N+ILR R K + P+W +R++ Y ++ + P++ Sbjct: 115 KGLINAILREFERRKESLLQKVEAQDPYLHPQWLLQRIKTAYPEQWPSILRANNERPPMW 174 Query: 178 IDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230 I + V E + +L + + P S+ LPGF G VQD SA Sbjct: 175 IRVNVLHHSREKYLTELEKSGIKAKAHSICLDAVQILPPCSVKELPGFDLGWATVQDVSA 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL 288 + L N+ +LDLCAAPG KT ++ V A+D+ +RLE+++ NL RLHL Sbjct: 235 QRCIDLLDPQNDDYILDLCAAPGVKTTHILERAPSADVLAVDIDAKRLERIKENLQRLHL 294 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + + K+FD +L+D PCS+TG IRRHPD+ W R DI A Q + Sbjct: 295 SARLKVADALVPEQWYEGKMFDKILLDVPCSATGIIRRHPDIKWLRRDSDIAALAQLQSE 354 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 ++ ++ GG++++S CS+ +++++ + + L+ + E + + Sbjct: 355 IIKAVWPTLRQGGMLLYSTCSILPEENQQQITEFLK-HQLNAESITIQDEAVIG------ 407 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGFF + + Sbjct: 408 ------LQNLPQ--------TDEGDGFFYAKITK 427 >gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 449 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 105/455 (23%), Positives = 189/455 (41%), Gaps = 42/455 (9%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L V + L +A +++RD+ + +V T++ +D ++ Sbjct: 14 RERAMQVLLRVHSEGAYANVALVDALRGAA---MAERDRRFLTELVYGTVKAGETLDVMI 70 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L + + +++LLR+ QI ++D + AV AVE AK+ + A VN Sbjct: 71 RRYVA-DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKH-GGKGAASFVNG 128 Query: 127 I-------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + +R + K + +A P W +R + YG E + + Sbjct: 129 VLRTALREPQRAALPKGRDARSLALRMQHPVWMVKRWLHDYGYEEAERLCRCDNESAPLT 188 Query: 180 LT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASA 230 L ++ +L A + L ++ +L EG+ VQD S+ Sbjct: 189 LRTNTLRTSRTALMERLTAAGVRADASLRVPEGILLRTHGALDALAPLREGLAQVQDESS 248 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + G ++V+D CAAPGGKT + + ++ A D+ + +L ++ N +RL Sbjct: 249 MLVAYILGAEPGMTVIDACAAPGGKTTHIAQRMENRGRILAFDIYEEKLGRIMRNAERLG 308 Query: 288 LYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + +DA + D VLVDAPCS G +RR PD W + D Q Sbjct: 309 ISIIETQLLDAREIGAHYGVCADRVLVDAPCSGLGVLRRKPDARWRKSPSDAKTLPPLQL 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L VK GG++V+S C++++ ++ VV+ LR V + Sbjct: 369 AILASAARTVKQGGVLVYSTCTMERSENAAVVEAFLRGHEDFV-------LEETGAFLPE 421 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++I P + G DGFF +RR Sbjct: 422 QKTADRMVQIMP--------ETGGPDGFFIARMRR 448 >gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814] gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814] Length = 436 Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 105/464 (22%), Positives = 197/464 (42%), Gaps = 54/464 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++ +N R + +L + R ++ ++ L +R++ + +VN TL + Sbjct: 1 MQASVNERELVLDMLLQITRDGEYSHIVIKNVL--DKYQYLDKRERAFITRVVNGTLERM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + + K ++ +LR SV Q+ Y+D V D A+ + AV+ A + + + Sbjct: 59 IEIDYIINLFSKVKVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAVKLAGK-RGFVN 117 Query: 120 FAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR +SR ++ + +PEW ++ N Y +E V I A Sbjct: 118 LKGFVNGVLRNISRNLDKINYPDEKDKVSYLSVKYSLPEWLVKQWLNVYDEETVKTIGSA 177 Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGV 222 + + + E L + G + + +LP F EG+ Sbjct: 178 FLEEKPLTVRFNEHKIKKEDLVGILKKEGVTVGEVPEIPCALYLSGYDHLSALPSFCEGL 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKL 279 + VQD S+ +LD+CAAPGGK+ + V A D+++ +++ + Sbjct: 238 YQVQDLSSMQVALWSEVKEGDQILDVCAAPGGKSIHIAELLNGTGHVEARDLTEYKVDLI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R N++R L + + DA Y P K D V+ D PCS G + + PD+ + + Sbjct: 298 RDNIERSGLTNIEAVCQDATVYDPDKKKSADIVIADLPCSGLGVLGKKPDLRYKMNEKTE 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 QRK+L +VKP G +++S C++ ++++E V+ L+ P ELV Sbjct: 358 ADLVELQRKILSVVKDYVKPDGKLLYSTCTIHREENEGNVEWFLKEYP-EFELV------ 410 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ DGF+ ++R+ Sbjct: 411 ---------------------KDKQMIPGKDAGDGFYIAIIKRV 433 >gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A] gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis W23144] gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A] gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis W23144] Length = 435 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 197/460 (42%), Gaps = 47/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R + ++ V+ K ++ + ++ D+ L +V TL+ Sbjct: 2 MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTLKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++QLL +S+ Q LYLD + ++A++ AV+ AK+ + H Sbjct: 56 YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKK-RGGYH 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR V R + + +RIA +P+W + +G E+ I+ + Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGIEKTENIAQSF 171 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + ++ KL L +V+ F EG Sbjct: 172 LEPVATTVRANISRGSIDSIISKLEQEGYHVKKDDMLPFCLHISGLPVVNSNAFKEGYIS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + VLD C+APGGK + V A D+ + ++ ++ Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA + K +D +LVDAPCS G +R P++ +++ + I Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +KPGG +V+S C++++ ++E V+ L+ E P+ + Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKRHK-DFEFEPIQNPVTGEQ 409 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433 >gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 435 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 104/455 (22%), Positives = 196/455 (43%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + + + L+ + LS+ D+ L+ +V T++ ++ Sbjct: 3 NVRALAFETLEAIFQDKAYSNLKLNEVLKAN---ELSRADKNLLTELVYGTIKRKITLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++ LL +S+ Q YLD V D+A+++ AVE AK + H +K+V Sbjct: 60 YLKPFVQTRIKG---WMRHLLWMSIYQYQYLDKVPDHAIINEAVEIAK-VRGGLHNSKVV 115 Query: 125 NSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + QRI+ + +P+W + YG + I+ + + Sbjct: 116 NGILRNMMRSNLPNPADIKDDKQRISIMYSMPKWIVKHWVTHYGVDTTERIAQSMLERPG 175 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGG--------IRLKELPESIVSLPGFAEGVWWVQDAS 229 + V +T A + + L + + F +G+ +QD S Sbjct: 176 QTVRVNLTRKTVAQAIQQLQDEGYTVVQDSDIEYCLHASGKPVAESRAFKDGIVSIQDKS 235 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + Q+ +LD C+APGGK Q V A D+ + +++ + N+ +L Sbjct: 236 SMFVAQILAPAEGDDILDACSAPGGKACQTAELLDGTGHVDATDIHEHKIDLIEHNVRKL 295 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + D +K++D +LVDAPCS G +R P++ + + + I Q + Sbjct: 296 RLKNVTAFQHDDTK-PYEKMYDKILVDAPCSGLGVLRHKPEIKYMQTPETINNLVELQLE 354 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 ++ VKPGG++V+S C++++ ++E V+ L+ + E P + K Sbjct: 355 IMNNIKDSVKPGGVIVYSTCTIEQMENENVIYTFLKQNK-DFEFEPFSHPRTKE------ 407 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P + DGFF +RR Sbjct: 408 --EVKTLQILPQDFDS--------DGFFITKIRRK 432 >gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR5-3] gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR5-3] Length = 433 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 138/458 (30%), Positives = 213/458 (46%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK G R ++ +++ V+ + SL L+ +L RDQ L R I TLR Sbjct: 1 MKPGAAVRACAARIIAEVL-RGDSLDRALESHLT-----ILPGRDQPLCREICFGTLRQY 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR+DA+L +L L K + L + Q+ + + +A V V+ A K+ R Sbjct: 55 PRLDALLGQLLQKPLRAKDRDVHALALAGLYQLTSMRIPAHAAVSATVDAATVLKK-RQL 113 Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + L+N++LRR RE+ A S P+W L + + R I+ A S + Sbjct: 114 SGLLNAVLRRFQREEEALLAALSDAQASAHPDWLWNALGQHWPEHR-EQIARANNSYPPM 172 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDAS 229 L V D +++ +L + RL + LPGFAEG+ VQD + Sbjct: 173 TLRVNLSRVDRDSYLQQLADAGITAHPGRLSPAALTLEQAVDVTLLPGFAEGLCSVQDEA 232 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 A + QL +LD CAAPGGK+ + S A +TA+D+S+ RL +++ NLDRL Sbjct: 233 AQLAAQLLAPRPGERILDACAAPGGKSCHILEQLPSDASLTAMDISEERLHRVQENLDRL 292 Query: 287 HLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L A I D + FDA+L+D PCS+TG IRRHPDV R +D V A Sbjct: 293 GLAATLI-VGDGGHPPTALVDRGPFDAMLLDVPCSATGVIRRHPDVKVLRREEDAVSFAA 351 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR +L + PGG +++ CSL +++ + V + L E +++ Sbjct: 352 QQRAILNGLWPLLAPGGRLLYVTCSLLPEENSQAVAEFLARQSDASE---------EALH 402 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +A A + +++ PD+ SG DG + LR+ Sbjct: 403 VASAQACAQGLQLLPDV--------SGTDGLYFAMLRK 432 >gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus coleocola ACS-139-V-Col8] gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus coleocola ACS-139-V-Col8] Length = 456 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 201/460 (43%), Gaps = 42/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V LLD + ++ LS D LV +V ++ +D Sbjct: 14 QARFQALLILDQVENHGGYSNVLLDRFHQET---SLSPVDTNLVVKLVYGVIQRRYSLDY 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + LLR+S+ Q +YLD + D+AV AVE AK + V Sbjct: 71 FLAPFIKG--KKVDDWVASLLRLSIYQFIYLDRIPDHAVFSQAVEMAK-LIGHAGLGGFV 127 Query: 125 NSILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R LQ +A I W + L++ + + A+ + + Y Sbjct: 128 NGVLRNFQRRADLDLNKLENPLQALAVKYSIAPWIIKELQHQISEADLEALLGSLLEEPY 187 Query: 178 ID-------LTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + L + E + + L + P + L+ + V F +G +QD S Sbjct: 188 VSARIVKSGLNSQAAREQLSEEGLTSQASPISPVGLRFESGNPVHSSLFQQGALTIQDES 247 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLD 284 + + L ++VLD CAAPGGK + G K+ ALD+S +L K+ +L Sbjct: 248 SQLVASLGKLQAGMTVLDACAAPGGKATHIAQILRDLGGGKLQALDISSAKLTKVDDHLQ 307 Query: 285 RLHLY---AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + + + F KL+D + +DAPCS G +RR P++ +++ + I A Sbjct: 308 RLGLSQFVSLQVEDASKFIPTDGKLYDRIYLDAPCSGLGLMRRKPEIKYSKQANHIQALA 367 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL S +KPGG +++S C+L Q++EE V L+ EL + + + Sbjct: 368 EIQAELLNHTSSLLKPGGYLIYSTCTLASQENEEQVGAFLQEH-EDFELDQIIADEVMAA 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ +G IRI P DGFF L+++ Sbjct: 427 GL---INDQGMIRIWPHQY--------HTDGFFIARLKKI 455 >gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum DSM 5476] gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum DSM 5476] Length = 441 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 195/461 (42%), Gaps = 41/461 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR ++ L + ++ D S LS RD+ + L Sbjct: 1 MINRT-ARDLALSALLKMDKQGAYSNLAFDGMLSSS---SLSPRDRDFAAKLFYGVLETK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ + ++ +LR+ + QI YLD+ D+A V+ +V K + + Sbjct: 57 ITLDYIIASYATMKPEKISSDVRNILRLGLYQIKYLDLEDFAAVNESVNLVK-LRGKKSA 115 Query: 121 AKLVNSILRRVSREKIELLQRIAG------ISIIPEWFKERLENFYGKERVLAISDACIS 174 + VN+ILR R+ + P W YG+E I ++ + Sbjct: 116 SGFVNAILRAFLRDGKNIPLPEDPDERLSVRFSCPVWLVRSFVGEYGRETAERILESQLG 175 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE----------LPESIVSLPGFAEGVWW 224 + L V ++T A L A++ G + ++ FAEG++ Sbjct: 176 RPPLTLRVNT-LKTSAETLCALLQQEGIEAVPHPQEQTCVEVLGGGALTGTKAFAEGLFH 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 VQD S+ + + + ++LD+CAAPGGKT + A++TA D+ K+R+ ++ Sbjct: 235 VQDISSQLCARTVASYAPRTLLDVCAAPGGKTFTIAEELGDAAEITACDLHKKRVGLIKQ 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL L + D +E DA + FDAVL D PCS G IRR P++ + + + + Sbjct: 295 GAARLGLCSVDAVESDASKANDRFGQFDAVLCDVPCSGFGVIRRKPEIKY-KPQESLQGL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L S+VK GG++++S C++ K+++E+VV + LR +P V A Sbjct: 354 PAIQGNILQTSASYVKEGGMLIYSTCTIAKRENEQVVDEFLRRNPAFV------PAKLPG 407 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P + DGFF +++ Sbjct: 408 FLHQWVPDAVNRVTFLPGV--------HNSDGFFLAVFQKM 440 >gi|84515082|ref|ZP_01002445.1| ribosomal RNA small subunit methyltransferase B, putative [Loktanella vestfoldensis SKA53] gi|84511241|gb|EAQ07695.1| ribosomal RNA small subunit methyltransferase B, putative [Loktanella vestfoldensis SKA53] Length = 422 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 140/439 (31%), Positives = 221/439 (50%), Gaps = 21/439 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +SG+ R + HLL + + L+ A L+ D+ + + LR L Sbjct: 3 QSGLLPRRSAHHLLMQITTEGR----LMAELIAGGALAQLAPDDRARAQRLATDALRGLD 58 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R D +L L + LR+ + +++ + A + VV+ VE R+ + Sbjct: 59 RADRMLKPYLKKPPGD---HVMNALRLGLTELMQGE-AAHGVVNAYVEIVARNTRTQSMK 114 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 L N++LRR++ E E + A + + P W ++ L +G++ V + A + +DLT Sbjct: 115 GLTNAVLRRIADEGPEAWAKRA-VPLTPGWLRQPLVAAWGRDAVTGMEAAHFAGAPLDLT 173 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 K D A L V+LPTG +RL + + L G+ G WWVQDA+A++PV+L G + Sbjct: 174 AKGDPAGLATALGGVVLPTGTVRLAQA-GQVSGLAGYDAGDWWVQDAAAALPVKLLGDVT 232 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 L VLDLCAAPGGKT QL GA VTA+D+S++R+ +L NL R L A ++ Sbjct: 233 GLRVLDLCAAPGGKTLQLAAGGADVTAVDLSEKRMTRLTENLARTGLAATTLVSDAFALT 292 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +DAVL+DAPCS+TGTIRRHPD+ + +D + Q +L+ +S ++PGG + Sbjct: 293 TGG--YDAVLLDAPCSATGTIRRHPDLPYAKDGSEFGALIAQQERLIDHALSLLRPGGRL 350 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL + E +++ L P P+ + ++ EG +R+ PD Sbjct: 351 VYCTCSLLPDEGEVQIEEALARHPGLRVEPPMMAGV-----DPAWITEEGGLRLRPDYW- 404 Query: 422 KIDGVSSGMDGFFAVALRR 440 GMDGF+ L + Sbjct: 405 ---PDLGGMDGFYIAVLTK 420 >gi|125624853|ref|YP_001033336.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. cremoris MG1363] gi|4210751|emb|CAA10711.1| sunL protein [Lactococcus lactis] gi|124493661|emb|CAL98648.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. cremoris MG1363] gi|300071650|gb|ADJ61050.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. cremoris NZ9000] Length = 424 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 194/452 (42%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M NAR + +L+ + LD DS LS D+ V A+V + Sbjct: 1 MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKGFVTALVYGVVSKK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + +L + LL +++ Q+L++D V A VD AV+ AKR + Sbjct: 56 ALLEWYITPLLKKEPK---PWAKMLLLLTIYQVLFMDKVPISAAVDEAVKIAKRHDG-QA 111 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177 A +N++LR R + + +P+ +++ +G +R I ++ P + Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + L A +++ T L + F G +QD ++ + Sbjct: 172 VSLRKIDPTVEIAGTRPSLLTETA---LIADSGNFSITEEFQTGRITIQDETSQLVAPQL 228 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 VLD CAAPGGK+ + +TALD+ + +L+ + N R H+ Sbjct: 229 ELEGTEEVLDACAAPGGKSTHMAQYLTTGHITALDLYEHKLDLINQNAQRQHVADKITTQ 288 Query: 295 EMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA + FD +LVDAPCS G IRR PD+ + +++ D + Q ++L Sbjct: 289 KADATMIYENFGPEKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFIDLQKIQLEILNSA 348 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GI+V+S C++ +++ +VV + L + P E V +++ + I EG Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVHEFLENHPN-FEQVEISNEKPEVI-------KEG 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + ITP+M DGFF +++ + Sbjct: 401 CLFITPEMY--------HTDGFFIAKFKKIGE 424 >gi|259417637|ref|ZP_05741556.1| Fmu [Silicibacter sp. TrichCH4B] gi|259346543|gb|EEW58357.1| Fmu [Silicibacter sp. TrichCH4B] Length = 436 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 137/434 (31%), Positives = 210/434 (48%), Gaps = 23/434 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + LL V+ + LL E L D+ + + LR L R D V Sbjct: 23 ARRAAVTLLDKVLGEG-----LLLAECQTQVLERLEPADRARAQRLALEVLRSLERADRV 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L ++ LR+ ++ A + VV+ V R + + LVN+ Sbjct: 78 LAKHLRKPP---ALHVRNALRLGTVELC-SGGAAHGVVNDIVNLVARHRRHAQLKGLVNA 133 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 +LR+V+ + ++ + +P+W + L +G + +LAI A + +DL+ K Sbjct: 134 VLRKVATDGPTEWAKL-RVPRLPKWLRSPLAQAWGSDAMLAIEAAHLKGAPLDLSFKPGA 192 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + L PTG +RL + + +LPG+ +G WWVQDA+A++P +L VL Sbjct: 193 D--LSALGGKPTPTGSLRLDDA-GQVSALPGYEQGDWWVQDAAAALPARLIHAQAGERVL 249 Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 DLCAAPGGKT Q+ +GA VTA+D+S+ RL +L+ NL R A +I D K Sbjct: 250 DLCAAPGGKTLQMAAAGADVTAVDISEGRLARLQENLTRTGFSA-HVIAGDVL--AQKGQ 306 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +DAVL+DAPCS+TGTIRRHPD+ +D Q ++L + V+PGG +V+ C Sbjct: 307 YDAVLLDAPCSATGTIRRHPDLPHAKDGAGFGALIELQAQMLAHAWTLVRPGGRLVYCTC 366 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL + E ++ L P + + ID A ++ EG +R+ PD Sbjct: 367 SLLPDEGECQIEDALEMFPEA--RIGDRIQTLEGIDPAW-ITEEGGLRLRPDYW----PE 419 Query: 427 SSGMDGFFAVALRR 440 GMDGF+ L + Sbjct: 420 IGGMDGFYMAELIK 433 >gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 403 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 112/396 (28%), Positives = 195/396 (49%), Gaps = 23/396 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + W L + P + +LPGFAEG VQDAS Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL Sbjct: 235 AQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLG 294 Query: 288 LYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q Sbjct: 295 MKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 ++L +KPGG +V++ CS+ +++ + ++ Sbjct: 354 AEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAF 389 >gi|116512767|ref|YP_811674.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp. cremoris SK11] gi|116108421|gb|ABJ73561.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp. cremoris SK11] Length = 424 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 195/452 (43%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M NAR + +L+ + LD DS LS D+ V A+V + Sbjct: 1 MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKGFVTALVYGVVSKK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + +L + LL +++ Q+L++D V A VD AV+ AKR + Sbjct: 56 ALLEWYITPLLKKEPK---PWAKMLLLLTIYQVLFMDKVPTSAAVDEAVKIAKRHDG-QA 111 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177 A +N++LR R + + +P+ +++ +G +R I ++ P + Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + L A +++ T L + + F G +QD ++ + Sbjct: 172 VSLRKIDPTVEIAGTRPSLLTETA---LIADSGNFSIIEEFQTGRITIQDETSQLVAPQL 228 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 VLD CAAPGGK+ + +TALD+ + +L+ + N R H+ Sbjct: 229 ELEGTEEVLDACAAPGGKSTHMAQYLTTGHITALDLYEHKLDLINQNAQRQHVADKITTQ 288 Query: 295 EMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA + FD +LVDAPCS G IRR PD+ + +++ D + Q ++L Sbjct: 289 KADATMIYENFGPEKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFIDLQKIQLEILNSA 348 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GI+V+S C++ +++ +VV + L + P E V +++ + I EG Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVHEFLENHPN-FEQVEISNEKPEVI-------KEG 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + ITP+M DGFF +++ + Sbjct: 401 CLFITPEMY--------HTDGFFIAKFKKIGE 424 >gi|254466360|ref|ZP_05079771.1| Fmu [Rhodobacterales bacterium Y4I] gi|206687268|gb|EDZ47750.1| Fmu [Rhodobacterales bacterium Y4I] Length = 420 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 137/442 (30%), Positives = 216/442 (48%), Gaps = 22/442 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +AR + +LL V+ + LL Y A L+ D+ + + TLR L Sbjct: 1 MSDANHARRTAVYLLDQVLGEGR----LLAECYAAGALEKLAPEDRARAQRLAVETLRSL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D +L L + P + LR+ ++ A + VV+ V + + + Sbjct: 57 ERADRLLKKHLKKTPPLM---VMNALRLGTVELC-SGGAAHGVVNAMVAIVSKHRRHGQL 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR+V+ E ++ + +P W ++ L +G + +L + A + +D+ Sbjct: 113 KGLVNAVLRKVAEEGPAEWAKL-RVPRLPNWLRKPLVQAWGADAILGMEAAHYAGAPLDI 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T K ++ L V LPTG +R+ + +LPG+ G WWVQDA+A++P + Sbjct: 172 TGKPGVD--LQALGGVPLPTGSLRIS-SAGQVSALPGYQAGDWWVQDAAAALPALILNAQ 228 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 LDLCAAPGGKT Q+ +GA VTA+DVS+ R+ +LR NL+R L A ++ Sbjct: 229 PGEHALDLCAAPGGKTMQMAAAGASVTAVDVSESRVARLRENLERTGLVAHLVV---GDA 285 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +DAVL+DAPCS+TGTIRRHPD+ +D + Q ++L + VKPGG Sbjct: 286 LEQTGQYDAVLLDAPCSATGTIRRHPDLPQAKDGSEFGALIELQAQMLAHAWTLVKPGGR 345 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++ CSL + E V++ L P + A A ++ EG +R+ PD Sbjct: 346 LMYCTCSLLPDEGECQVEEALDMFPD---MAADREALKVPGVEADWITEEGGLRLRPDYW 402 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 GMDGF+ LR+ Sbjct: 403 ----PERGGMDGFYMALLRKTA 420 >gi|260426788|ref|ZP_05780767.1| Fmu [Citreicella sp. SE45] gi|260421280|gb|EEX14531.1| Fmu [Citreicella sp. SE45] Length = 420 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 142/440 (32%), Positives = 230/440 (52%), Gaps = 22/440 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + LL V+ + LL A+ L+ ++ + + LR L Sbjct: 1 MPATPTARGQAVQLLGQVLGQGR----LLSEAMSGGAWDSLAPAERAAAQRLAQEVLRNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D VL L + P ++ +LR+ ++ A + VV+ AV+ D++ Sbjct: 57 ERCDRVLKPHLRKAPP---LFVKNVLRLGAWELC-TGGAAHGVVNEAVQLVGADRKAHSM 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 +VN++LR+++ E ++ + +P W ++ L + +G + V A+ A ++ +DL Sbjct: 113 KGMVNAVLRKLAAEGPAQWTKL-RVPRLPRWLRDPLASAWGGKPVAAMEAAHLAGAPLDL 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T K D A +L +LPTG +RL + + +LPG+ EG WWVQDA+A++P +L G + Sbjct: 172 TAKGDPAALAERLGGELLPTGSVRLLDA-GQVSALPGYDEGAWWVQDAAAALPARLLGDV 230 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 L VLD+CAAPGGKT QL +GAKVTALD+S+ R+ ++ NL R L A + Sbjct: 231 AGLEVLDMCAAPGGKTMQLAAAGAKVTALDLSESRMARVTENLARTGLSATTVT---GDA 287 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + +DA+L+DAPCS+TGTIRRHPD+ + + I + Q + + ++PGG Sbjct: 288 MEHEGSYDAILLDAPCSATGTIRRHPDLPHAKHGEGITELIGLQEAMFDHALRLLRPGGR 347 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VF CSL + E V++ L P +E++P + + S EG +R+ PD Sbjct: 348 LVFCTCSLIPDEGECHVEEALARHPG-LEVLPAEAPGIED----RWRSAEGGLRLRPDFW 402 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 403 AE----RGGMDGFYMAHLRK 418 >gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E] gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E] Length = 470 Score = 247 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 212/467 (45%), Gaps = 50/467 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R +S+ ++ V+ + SL+ L+ + +D L++ I R LP Sbjct: 26 KKIQSVRALSARIILQVLDQGKSLSALIPEL-----QSQVKAQDLPLLQEICFGVCRVLP 80 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R++ ++ ++ L K + LL V + QILY + +A VD V A ++ +F Sbjct: 81 RLEQIIKKLVDKPLKGKTRIVHCLLLVGLYQILYTRIPAHAAVDEVVN-ATSALKSENFR 139 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN +LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P++I Sbjct: 140 GLVNGVLRRFLREQQEILAVVDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWIR 199 Query: 180 LTVKFDIET-------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + + +L++ P ++ +LP F EG VQD A Sbjct: 200 VNQQLCTTENYRTLLLTEQELDSFKDENPNALRLAQPTAVQNLPHFTEGWVTVQDVHAQW 259 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N +LD CAAPGGKT ++ AKV ALDV + RL ++ NL RL+ A Sbjct: 260 SALLLEAKNGDLILDACAAPGGKTTHILELAPQAKVIALDVEQSRLNRVAENLARLNQQA 319 Query: 291 EDIIEMDAFDYCPKKL--------------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 I DA FD +L+DAPCS+TG IRRHPD+ W R D Sbjct: 320 VLI-CGDATKPDDWLPNAAERLIGKKTDLQFDRILLDAPCSATGVIRRHPDIKWLRQEQD 378 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + A Q+++L +KP GI++++ CSL Q++ E ++ L ++P +L PL A Sbjct: 379 IGQLAALQQQILTALWKKLKPNGILLYATCSLLPQENSEQIRTFLANTP-DAKLEPLPFA 437 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ E + P DGF+ LR+ + Sbjct: 438 TQEN---------EIGKQFIPSEFSG--------DGFYYAKLRKTDK 467 >gi|83941724|ref|ZP_00954186.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. EE-36] gi|83847544|gb|EAP85419.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. EE-36] Length = 423 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 143/441 (32%), Positives = 227/441 (51%), Gaps = 21/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G+ AR + +LL ++ + L+ A L D+ + + TLR Sbjct: 1 MSDTGVQARRSAVYLLDMILGEER----LMSELLSAGALDKLPPDDRARAQRLAMDTLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + R D +L L P +++ LRV ++ A + VV+ VE K+ H Sbjct: 57 MERADRLLQKHLSKYPP---LTVRNALRVGTVELCQGG-AAHGVVNAMVELVATHKKLGH 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L N++LR+++ E E + +P+W + L +G + + I A + +D Sbjct: 113 LKGLTNAVLRKIAAEGPEAWAAL-RAPRLPKWLRGPLTEAWGPDAMTGIEAAHFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT K D E A + +LPTG +R+ + + ++PGFAEG WWVQDA+A++PV++ Sbjct: 172 LTAKRDPEGLAAAVGGTVLPTGSVRVADA-GQVTTMPGFAEGDWWVQDAAAALPVKILAP 230 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLDLCAAPGGKT QL +GA+VTA+D SK+R++++R NL R+HL A+ ++ Sbjct: 231 QKGEAVLDLCAAPGGKTMQLAAAGAQVTAVDNSKQRMQRVRENLARVHLPAKVVVV---D 287 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + FDA+L+DAPCS+TGTIRRHPD+ +D + Q +++ S + PGG Sbjct: 288 ARRFEGTFDAILLDAPCSATGTIRRHPDLPHAKDGSEFGDLIELQSEMIDHAWSLLNPGG 347 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++F CSL + E V + L V ++ +D A + EG +R+ PD Sbjct: 348 RLIFCTCSLLPDEGEVQVDEALERHADM--RVDRDALAVPGVDPAWT-TQEGGLRLRPDY 404 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 GMDGF+ LR+ Sbjct: 405 W----PELGGMDGFYIACLRK 421 >gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E3 str. Alaska E43] gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E3 str. Alaska E43] gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 438 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 41/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L V+ + +L E + L +RD+ L+ IV LR +D Sbjct: 1 MNCRNLAVKILKRVIDEGAYSNIILSNELNE---ANLEERDKALLTEIVYGVLRRKKTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + + + + +LRV++ Q+ +LD V YA + AV++AK+ + KL Sbjct: 58 LIIANFV-RDIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKI--SPEAGKL 114 Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR S++ + A W L YG++ I Sbjct: 115 VNGILRNFSKDPDDITISGNKINEYAYKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQ 174 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + V + L + SI P F +G VQD Sbjct: 175 TTVRVNDTKCEYDEVFEKLEEIGYCVEEGFMCPEAILIKGGSSIQENPLFKDGEITVQDE 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285 SA + L N++ VLDLC+APGGKT + + +V A D+ + +L ++ N +R Sbjct: 235 SAMLVAPLLELENDMKVLDLCSAPGGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCER 294 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L I DA D VL+D PCS G IR+ P++ W + +++ + Sbjct: 295 LGLNNVKIEVGDATKLNADLVSYADRVLIDVPCSGLGIIRKKPEIKWNKTRENLREIIPV 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+++ ++K GG++++S C+L+K+++EE ++ L + + + Sbjct: 355 QREIMNNAWEYLKNGGVMIYSTCTLNKEENEENIEWFLNTHKDCKL-----KTIFIGKED 409 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G + I P+ MDGFF L + Sbjct: 410 NLIYNKNGTLTILPNA---------KMDGFFVAKLEK 437 >gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228] gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis M23864:W2(grey)] gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228] gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis M23864:W2(grey)] gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis VCU028] gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis VCU045] Length = 435 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 104/460 (22%), Positives = 195/460 (42%), Gaps = 47/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R + ++ V+ K ++ + ++ D+ L +V T++ Sbjct: 2 MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTIKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++QLL +S+ Q LYLD + ++A++ AV+ AK+ H Sbjct: 56 YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGF-H 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR V R + + +RIA +P+W + +G E+ I+ + Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGVEKTENIARSF 171 Query: 173 ISPLYIDLTVKFDIETW---AHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + ++ KL L +V+ F EG Sbjct: 172 LEPVTTTVRANISRDSIDSIISKLEQEGYHVKKDDMLPFCLHISGMPVVNSNAFKEGYIS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + VLD C+APGGK + V A D+ + ++ ++ Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA + K +D +LVDAPCS G +R P++ +++ + I Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +KPGG +V+S C++++ ++E V+ L+ E P + Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKRHK-DFEFEPFQNPATGEQ 409 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433 >gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis SK135] gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis BCM-HMP0060] gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis SK135] Length = 435 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 103/460 (22%), Positives = 196/460 (42%), Gaps = 47/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R + ++ V+ K ++ + ++ D+ L +V T++ Sbjct: 2 MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTIKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++QLL +S+ Q LYLD + ++A++ AV+ AK+ + H Sbjct: 56 YSLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKK-RGGYH 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN +LR V R + + +RIA +P+W + +G E+ I+ + Sbjct: 112 TGNIVNGVLRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGVEKTENIARSF 171 Query: 173 ISPLYIDLTVKFDIETW---AHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + ++ KL L +V+ F EG Sbjct: 172 LEPVTTTVRANISRDSIDSIISKLEQEGYHVKKDDMLPFCLHISGMPVVNSNAFKEGYIS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + VLD C+APGGK + V A D+ + ++ ++ Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA + K +D +LVDAPCS G +R P++ +++ + I Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +KPGG +V+S C++++ ++E V+ L+ E P + Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKRHK-DFEFEPFQNPATGEQ 409 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433 >gi|300024959|ref|YP_003757570.1| sun protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526780|gb|ADJ25249.1| sun protein [Hyphomicrobium denitrificans ATCC 51888] Length = 468 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 160/440 (36%), Positives = 235/440 (53%), Gaps = 9/440 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR V+ L V+ ++ + +A R L+ RD+ R I LR Sbjct: 34 ADGLLARDVAVSALFSVLVEKRPFDDV---FAKAAAARNLAPRDRAFARLIATTVLRNRG 90 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + AVL L LP L+Q+L + AQ+L + +A + LAV+Q + D+ + F Sbjct: 91 SLQAVLRTYLEKPLPEHLGRLEQILLAAAAQLLLIKTPPHAAISLAVDQCRADRVGKRFG 150 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR+S L + + P+W R YG I+ A +S +D+ Sbjct: 151 NLVNAVLRRLSESGSGRLASLDNVMLTFPDWLMARWSRTYGAAEARQIARASLSEPSLDI 210 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 TVK D + WA +LN V LPTG IR + L G+ +G WWVQDA+A++PV+L G + Sbjct: 211 TVKSDADAWASRLNGVALPTGSIRCSH-VGRVEELDGYNDGAWWVQDAAAALPVKLLGDV 269 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + LS LDLCAAPGGKTAQL GA+V A+D S RL +L+ NL RL L AE I DA Sbjct: 270 SGLSALDLCAAPGGKTAQLAAGGARVVAVDKSAGRLARLQENLQRLGLSAE-ISVADAQS 328 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + + FD VL+DAPC++TGTIRRHPD+L+ + +D+ A Q KLL Q VK GG Sbjct: 329 FSSETAFDVVLLDAPCTATGTIRRHPDILYLKRPEDVAALAALQAKLLRQAAGLVKSGGT 388 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++ CSL+ ++ EE + L A +++ + + +G +R P Sbjct: 389 LLYCTCSLEPEEGEEQIAAFLSEHRDFRRR---PIALDETVIPLLWRTADGDLRTLPSYF 445 Query: 421 EKIDGVSSGMDGFFAVALRR 440 ++ G+DGF+A L + Sbjct: 446 SELPEGFRGLDGFYAAMLVK 465 >gi|170741154|ref|YP_001769809.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46] gi|168195428|gb|ACA17375.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46] Length = 447 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 175/446 (39%), Positives = 235/446 (52%), Gaps = 12/446 (2%) Query: 2 KSGMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 +G+ AR ++ ++ ++ R +L +LD +A L D L RAI T R Sbjct: 9 TAGLAARRLAYASVADLLGARSGTALDDVLDPAASRAA---LPGPDLALARAIATATFRH 65 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L I L L LP + L LL AQIL L+V D+A VDLAV AK D RH Sbjct: 66 LGLIRHALAARLAEGLPEGQPKLLALLATGAAQILVLNVQDHAAVDLAVRLAKADSGLRH 125 Query: 120 FAKLVNSILRRVSREKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACISPL 176 + LVN++LRR+SREK +L+ P W R YG E +I+ A + Sbjct: 126 LSGLVNAVLRRISREKAAILREGEADPLGIETPGWLARRWSAAYGAETARSIAAAHLRGA 185 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 +DL+V+ D WA +L A +LPTG +RL E + LPGFAEG WWVQDA+A++P +L Sbjct: 186 PLDLSVRGDPAPWAERLGARLLPTGSLRLDESRTPVPLLPGFAEGEWWVQDAAAALPARL 245 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 V DLCAAPGGKTAQL +GA V A+D S+ RL +LR NL RL L AE Sbjct: 246 LAVRPGERVADLCAAPGGKTAQLAAAGASVLAVDRSEARLRRLRENLARLGLTAEARAAD 305 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 A + FDA+L+DAPCS+TGTIRRHPDV WT+ D+ + Q +LL + ++ Sbjct: 306 -ALALPEDERFDAILLDAPCSATGTIRRHPDVAWTKREADLGRLTALQARLLDKAARLLR 364 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+ CSL+ ++ E + L P + A L P G +R Sbjct: 365 PGGRLVYCTCSLEPEEGEGQAEAFLARHPDFARR---PVDPAEIGGEAALLGPAGDLRTL 421 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P +G G+DGFFAV L + Sbjct: 422 PCAWLPAEGGRGGLDGFFAVRLGKAA 447 >gi|83950714|ref|ZP_00959447.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius nubinhibens ISM] gi|83838613|gb|EAP77909.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius nubinhibens ISM] Length = 410 Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 136/427 (31%), Positives = 221/427 (51%), Gaps = 19/427 (4%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L + + L LL A L D+ + + TLR + R D ++ + Sbjct: 1 MLDKITGEGRMLQDLL----AAGAVDRLDPADRARAQRLTTQTLRAMERADRLISRHVKK 56 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 P +++ +LR++ ++ Y + VV AV A + ++++ LVN++LR+++ Sbjct: 57 KPP---LTIRNILRLATVELAYGG-DAHGVVGEAVTLAGEGQRSQNYKGLVNAVLRKIAE 112 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 E + + +P W + L + YG V + A + +DLT K D A Sbjct: 113 EAPRSWNDL-RVPRLPGWLRGPLLDAYGPGAVNGMEAAHFAGAPLDLTAKTDAAALAEAT 171 Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 +LP+G +RL + P + +LPG+AEG +WVQDA+A++PV++ +VLDLCAAPG Sbjct: 172 GGTLLPSGSVRLTD-PGQVSALPGYAEGAFWVQDAAAAMPVRILDPKPGENVLDLCAAPG 230 Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 GKT Q+ SGA TALD+S +R+++++ NL+R L A E +DA+L+D Sbjct: 231 GKTLQIAASGASATALDLSAQRMQRVQENLERTGLAASC--ETGDALRHTGGPYDAILLD 288 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+TGT+RRHPD+ + +D DI + Q ++L +S +KPGG ++F CSL + Sbjct: 289 APCSATGTLRRHPDLPFAKDGSDIGRLITLQGEMLDHALSLLKPGGRLMFCTCSLLPDEG 348 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E V++ L LV A + ++ EG +R+ PD GMDGF Sbjct: 349 ECHVEEALLRHEG---LVVDREALAQPGIDPAWITEEGGLRLRPDYWAD----QGGMDGF 401 Query: 434 FAVALRR 440 + LR+ Sbjct: 402 YMALLRK 408 >gi|210617187|ref|ZP_03291454.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787] gi|210149462|gb|EEA80471.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787] Length = 430 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 88/440 (20%), Positives = 177/440 (40%), Gaps = 37/440 (8%) Query: 25 LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 L + ++ L ++++ + + TL + +D +++ + + K ++ Sbjct: 2 SHIALRNVL--NKYQYLDKKERAFITRVTEGTLERMIELDYIINQFSKVKVNKMKPVIRN 59 Query: 85 LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI- 142 ++R +V Q+ Y+D V + A + AV+ A + K + VN +LR + R ++ Sbjct: 60 IIRSAVYQMKYMDSVPNSAACNEAVKLAVK-KGFVNLKGFVNGLLRNIDRNLEQISYPDE 118 Query: 143 -------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHK 192 + +P W + Y +E V + + + + E Sbjct: 119 KDLEQYLSVKYSMPTWILRQWLAAYDRESVECMLQDFLKEKDTIIRCDLGQMPKEELVKA 178 Query: 193 LNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 L + I S L F +G + VQD S+ + L ++ Sbjct: 179 LEGEGVHVEEHPYLPYALRISSYNYLGELETFQKGAFSVQDISSMLVAHLAEPKEGDEII 238 Query: 247 DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D+CAAPGGK + V A D+++ ++ + N+ R + + + DA Sbjct: 239 DVCAAPGGKALHMAEVLCGTGHVQARDLTEYKVGLIEENILRSGMTNIEAVRWDATQKDE 298 Query: 304 K--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + D V+ D PCS G + + D+ + + + QRK+L +VKPGG + Sbjct: 299 TAVEKADIVVADLPCSGLGVLGKKTDLKYKMTEETQKELVALQRKMLSTVKDYVKPGGTL 358 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C++ ++++ V L + ELVP+ + ++ + +G I++ P + Sbjct: 359 VYSTCTIHEEENMGNVHWFLEQNK-EFELVPIAQLLCE--ELKNDVVEQGCIQLLPGI-- 413 Query: 422 KIDGVSSGMDGFFAVALRRL 441 DGFF R++ Sbjct: 414 ------HDSDGFFIAKFRKV 427 >gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis FRI909] Length = 435 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 196/460 (42%), Gaps = 47/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R + ++ V+ K ++ + ++ D+ L +V TL+ Sbjct: 2 MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTLKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++QLL +S+ Q LYLD + ++A++ AV+ AK+ + H Sbjct: 56 YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKK-RGGYH 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR V R + + +RIA +P+W + +G E+ I+ + Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGIEKTENIAQSF 171 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + ++ KL L +V+ F EG Sbjct: 172 LEPIATTVRANISRGSIDSIISKLEQEGYHVKKDDMLPFCLHISGLPVVNSNAFKEGYIS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + VLD C+APGGK + V A D+ + ++ ++ Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA + K +D +LVDAPCS G +R P++ +++ + I Sbjct: 292 NIKKLKLNNIKAFQHDATEVYNKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +KPGG +V+S C++++ ++E V+ L+ E P + Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFLKKHK-DFEFEPFQNPATGEQ 409 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 410 V--------KTLQILPQDF--------NSDGFFISKIKRK 433 >gi|126738334|ref|ZP_01754055.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. SK209-2-6] gi|126720831|gb|EBA17536.1| ribosomal RNA small subunit methyltransferase B, putative [Roseobacter sp. SK209-2-6] Length = 432 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 144/439 (32%), Positives = 215/439 (48%), Gaps = 22/439 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ AR +LL V+ + LL Y A L+ ++ + + TLR L Sbjct: 14 SDGIPARRTVIYLLDQVLGEGR----LLSECYAAGALERLAPDERARAQRLAAETLRSLE 69 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R D +L L S P ++ LR+ ++ A + VV+ V + + + Sbjct: 70 RADRILQKHLKKSTP---LTVHNALRLGTVELCQGG-AAHGVVNAMVTIISKHRRHGKLK 125 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR+V+ + Q++ + +P+W + L +G E ++AI A + IDLT Sbjct: 126 GLVNAVLRKVAEQGPAEWQKL-RVPRLPKWLRSPLAEAWGNEAMMAIEAAHFTGAPIDLT 184 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 K + L L TG RL E + +LPG+ G WWVQDA+A++P Q+ Sbjct: 185 GKRGAD--LSALPGKRLATGSFRLAEA-GQVSALPGYEAGDWWVQDAAAALPAQMLDAKP 241 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDLCAAPGGKT Q+ +GA+V A+D S R+E+L+ NL R L D+I DA + Sbjct: 242 GERVLDLCAAPGGKTMQMAEAGAQVLAVDTSASRMERLQENLTRTGL-NADLIVGDALEQ 300 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +DAVL+DAPCS+TGTIRRHPD+ +D Q ++L S VKPGG + Sbjct: 301 T--GQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGALIELQAQMLAHAWSLVKPGGRL 358 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+ CSL + E V++ L P D ++ EG +R+ PD Sbjct: 359 VYCTCSLLPDEGECQVEEALDMFPDMTVDRSAVELPGVEPDW---ITEEGGLRLRPDYW- 414 Query: 422 KIDGVSSGMDGFFAVALRR 440 G+DGF+ LR+ Sbjct: 415 ---SDRGGIDGFYMALLRK 430 >gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B [Phascolarctobacterium sp. YIT 12067] gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B [Phascolarctobacterium sp. YIT 12067] Length = 453 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 97/461 (21%), Positives = 186/461 (40%), Gaps = 47/461 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L+ V+ L+ S LS D+ L +V T++ +D Sbjct: 13 ARGAAALLVRMVLEDGAYTNIALNQYLRGSR---LSDLDRRLATELVYGTVKASGTLDWY 69 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + + +LR+S Q+LY+ + A V+ AV+ A+ + AK VN Sbjct: 70 LAQCVSRPLDKVAGDILAILRISTYQLLYMTRIPASAAVNEAVKLARSV-SHEGSAKFVN 128 Query: 126 SILRRV-----------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 +LR + + + ++ P W +R +G+ + + Sbjct: 129 GVLRGLLRKQEAGAFVLPDTEKQDADYLSLQYYHPRWLVKRWLGPWGRGGTERLLAFDNT 188 Query: 175 PLYIDLTVKF---DIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + L V + L + + E S+ +L +++ Sbjct: 189 AAPVCLRVNTLVTTRDKLLADLTEMGAQVHASEWSPYGIVAEHLPSLHTLLAALPQHFYI 248 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD S+ + + + VLD+C+APGGK + + +V A D+ + +LE + N Sbjct: 249 QDESSMLVAPVLAPQPGMRVLDMCSAPGGKATHVAQLMQDKGEVIACDIHEHKLELIAEN 308 Query: 283 LDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + + ++ DA + +FD VLVDAPCS G +RR + W + D+ Sbjct: 309 AARLGMKSVKTLQNDALQLRSEWLGVFDRVLVDAPCSGLGVLRRRAEARWRKQRKDLKLF 368 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L +VK GG +V+S C++++ ++ +V++ L P + + + Sbjct: 369 PPLQLAILKNAAQYVKDGGTMVYSTCTIEQSENHYLVEEFLTQHPEWQRVEFTHPLTGEQ 428 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ P + G+DGF+ L + Sbjct: 429 VQE---------LQLLPQ--------NDGIDGFYICKLMKK 452 >gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1] gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1] Length = 442 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 132/461 (28%), Positives = 195/461 (42%), Gaps = 48/461 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ++AR ++ L V K L A D+ LV +V T+R +D Sbjct: 3 LSARRLALDTLERV-AKGAYADVALHQVLQRYALHG---SDRTLVTELVYGTIRQQRTLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ P +Q +LR+ + Q+ YLD + +A V +VE K+ FAKL Sbjct: 59 TLIQGFCRQLPP---LPVQLVLRLGLYQLRYLDRIPAHAAVHSSVELVKQI-GLEGFAKL 114 Query: 124 VNSILRRVSREKIELLQRIA----------GISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LRR SR + L+ P+ + A+ Sbjct: 115 VNGVLRRYSRCTTDPLEAFIAHLPLVSQLGCRYSFPDELIASWLERLPLQECTALCQWFN 174 Query: 174 SPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 P +DL + D ET + L + G+ L +S+ LPG+A G W Sbjct: 175 QPPRLDLRLNPLRITADQLIADFETAGYGLQPIPPLPQGLVLSHCGQSMQELPGYAAGHW 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD +A L V+D CAAPGGKT + + +V A D S RL KL Sbjct: 235 SVQDRAAQWVSHLLDPQPGEVVIDACAAPGGKTTHIAELMEDQGRVIACDRSPHRLRKLA 294 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N DRL L + +I +D+ + D VL+DAPCS TGT+ RH D W + + Sbjct: 295 QNRDRLGLKSIEIHILDSAAAGDFAAVGDRVLLDAPCSGTGTLHRHADARWRPLKRRLGE 354 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +LL +VKP G++V++ CSL+ ++E +Q+ L P Sbjct: 355 LLPLQAQLLATVSQWVKPYGLLVYATCSLEPAENEAQIQQFLAHHPQW-------HIEPP 407 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +PEGWI + P + MDGFF V LRR Sbjct: 408 PPNFPLKAAPEGWITVWPQQQD--------MDGFFMVRLRR 440 >gi|81428305|ref|YP_395305.1| putative rRNA methytransferase (sun protein) [Lactobacillus sakei subsp. sakei 23K] gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei subsp. sakei 23K] Length = 447 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 106/465 (22%), Positives = 197/465 (42%), Gaps = 44/465 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 R ++ +L+ + ++ LD + L+ +D + +V ++ Sbjct: 2 PNKTPRYLAVEILTAIAKQNSYSNLALDQVINKNR---LNPQDAGFLTQLVYGVIQHEYT 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D L + + ++Q+LR +V Q +YLD V ++A+ A E AK+ + + Sbjct: 59 LDYYLAPFIQKP-KKMDNWVRQVLRTAVYQQVYLDRVPEHAIFYEATEIAKKM-GHAGVS 116 Query: 122 KLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACIS 174 KLV +ILR++ R + L IA +P+W +L+ G +++ ++ Sbjct: 117 KLVTAILRQLQRSGLPDLNAIADPIERLSVQYSVPQWLVAKLQADLGDDKLESLLATINQ 176 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQ 226 P L V + T L + ++ L + S F G + +Q Sbjct: 177 PANASLRVNTRVNTVDAILAELQPQFNDLQPSQIAKVGLVAQGGHLASGALFEAGDYTIQ 236 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRC 281 D S+ + VLD CAAPGGKT + G ++TALD+ ++ + Sbjct: 237 DESSMLVAPSLDIQPGDQVLDACAAPGGKTTHMATYLDAQRGGQITALDIHDHKVRLIEQ 296 Query: 282 NLDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N RLH+ + + + FD +LVDAPCS G +RR P++ ++R D+ Sbjct: 297 NAKRLHVEDVVSAQALDARKVGEQFGEAHFDKILVDAPCSGLGLMRRKPEIKYSRQPADL 356 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q +L +K GG + +S C++ +++++VV + + P E+ P+ Sbjct: 357 MNLQRIQLAILDAVAPTLKVGGRLTYSTCTIVPEENQQVVAAFVANHP-EFEIEPVPLEL 415 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + A +++I PD + DGFF L+R Sbjct: 416 PLAQNQASP-----FVQIYPDDYQ--------TDGFFIACLKRRA 447 >gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium sp. 'sapolanicus'] gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium sp. 'sapolanicus'] Length = 444 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 115/456 (25%), Positives = 201/456 (44%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N R L+ V K T LLD + QRD+ L I +R +D Sbjct: 2 TNLRTKIIEALARVE-KGSYSTLLLDSFLQEIT----DQRDKNLFTEIFYGVIRNKLYLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ SL + + LR+ + Q+L+LD + A + +VE K +N+ A Sbjct: 57 HIIKHFSNKSLEKMDKEVLLGLRIGIYQLLFLDKIPARAAIYESVEAVKLMLKNKGAAAF 116 Query: 124 VNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN ILR V+R+ + L+ + PEW +R + YG E+ I A Sbjct: 117 VNGILRNVNRKIDQVSIIPREKSPLKHFSIKYSYPEWMIKRFIDQYGIEKAEKIIKAGNK 176 Query: 175 PLYI---DLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQ 226 + ++K + + L L + + V F +G ++Q Sbjct: 177 RAEVIYRHNSLKMSKQEFLRSLKREGLDFKETFVPGFYNLLNANNPVDTEVFKKGGAYIQ 236 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 SA + L ++ VLDL AAPGGKT L + + + ALD++ RL ++ N+ Sbjct: 237 GTSAGLASLLLEPKEDMDVLDLAAAPGGKTTHLAMLMENTGHIKALDINPTRLNLIKENM 296 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 RL + + + DA +Y +K +D +L D PCS G I P++ W + DI A Sbjct: 297 QRLGVKNVSLEKADAAEYQSEKKYDRILADLPCSGLGLISAKPEIKWQKKEKDIKNMAKL 356 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L IS +K G++++S C+L +++++ +++++L + +EL+ LN + Sbjct: 357 QYEILNNNISKLKSEGMLLYSTCTLTREENQLLIERILTENK-SLELLDLNKKIKNITGL 415 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + G++ I P ++ +GFF L+ Sbjct: 416 E--IKSNGYVEILPGLI--------NSEGFFYALLK 441 >gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1] Length = 445 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 109/460 (23%), Positives = 204/460 (44%), Gaps = 38/460 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR ++ +L + + LL S L++ D+ L +VN LR+ Sbjct: 1 MTT---ARELALQVLQSLETGKQQSDTLLHRSLHHS---TLNRADRALSTGLVNGVLRYR 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D V+ L + ++ +LR+ V QIL+L+ V D+A V+ V+ A++ K R Sbjct: 55 LQLDFVIAQFYHHKLEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECVKLARKYKGER- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 +KLVN +LR+++ E + L + + A P+W ER YG E+ A+ Sbjct: 114 MSKLVNGVLRKITPESVTLDEWLKEKKNEEQLAVKYSHPQWLVERWSAAYGNEKSEALLS 173 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL-------PGFAEGVW 223 + ++ A + + + + ++I P +G Sbjct: 174 YNNQFPSFGFRIN-RLKNSAGRFFSDPAMAAVMHEESGIDNIFLSKDFNAFEPAVIDGRL 232 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQ+ + ++ L +VLDLCAAPGGK + + + ++TA+D +++LEK+ Sbjct: 233 TVQNPTQALACLLLHPAPGSNVLDLCAAPGGKATFMAELMENRGQITAVDRYEQKLEKIE 292 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + + L + + DA + P+ DA+L+DAPC+ TG + R ++ W + + + + Sbjct: 293 SHAEALGITIIKTVMEDARSFMPEIHPDAILLDAPCTGTGVLGRRAELRWKLNPEMLQEL 352 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +LL + GI+V++ CS++ +++ + LR P + + Sbjct: 353 LVLQAELLDHAAELLDENGILVYATCSIEPEENNLQIYSFLRRHPDF-----IADPVGEH 407 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S EG + + G G DG F LR+ Sbjct: 408 LPEQFRQSNEGC-----GAILTLPGEHPGFDGGFCQRLRK 442 >gi|188579790|ref|YP_001923235.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001] gi|179343288|gb|ACB78700.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001] Length = 438 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 172/443 (38%), Positives = 240/443 (54%), Gaps = 11/443 (2%) Query: 3 SGMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 G+ AR V+ ++ ++ + ++L L + L + L RAI + R L Sbjct: 2 PGLAARHVAREAVATLVGPARGLALEDALAQAARGAR---LEPGEAALARAIATASFRRL 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 I A L L LP + L LL AQIL L VAD+A VDL+V AK D + +H Sbjct: 59 GFIQAALAARLRDGLPENRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHL 118 Query: 121 AKLVNSILRRVSREKIELL--QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 A LVN++LRR+ RE+ + + P+W R YG+ AI+ A + + Sbjct: 119 APLVNAVLRRIVRERDAIRAEETDPLAHNTPDWLARRWRAAYGEAAARAIATAHLEGAAV 178 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 DLT+ D E WA +L V L G +RL E E++ LPG+AEG WWVQDA+A++PV+L Sbjct: 179 DLTLARDPEIWAERLGGVRLDLGSVRLVEAREAVADLPGYAEGAWWVQDAAAALPVRLLA 238 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 ++ V DLCAAPGGKTAQ+ +GA VTA+D S RLE+L NL+RL L AE + DA Sbjct: 239 PVSGERVADLCAAPGGKTAQIAAAGAAVTAIDRSAGRLERLGRNLERLGLTAEVV-TTDA 297 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 FDAVL+DAPCS+TGT+RRHPDV WT+ D+ + QR+LL + +PG Sbjct: 298 LALPEDTPFDAVLLDAPCSATGTLRRHPDVAWTKSETDVFRLVGLQRRLLDKAARLTRPG 357 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+ CSL+ ++ + L P E + + + A + P G +R P Sbjct: 358 GRLVYCTCSLEPEEGSGQIADFLNRHPN-FERIAITPD--RVAGHAELIDPSGDLRTLPS 414 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 L G + G+DGFFA LRR Sbjct: 415 HLAGGTGRAGGLDGFFASLLRRK 437 >gi|296877028|ref|ZP_06901070.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis ATCC 15912] gi|296431972|gb|EFH17777.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parasanguinis ATCC 15912] Length = 437 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 130/455 (28%), Positives = 199/455 (43%), Gaps = 38/455 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 MNAR +L V L S LS +D+ V +V T+ Sbjct: 4 KQMNAREQIVRVLEEVFEHGAYSNIALKKTLEHSQ---LSDKDRSFVTEVVYGTVARKIT 60 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ L V+ + + LL +S+ Q++YLD + D+A+V+ AV AK K Sbjct: 61 LEWYLSHVIE-DRTKLDPWVYYLLMMSLYQLVYLDRIPDHAIVNEAVRIAKSRK--EGSE 117 Query: 122 KLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 K VN+ILR+ +R + +P W + L YG+ER AI + Sbjct: 118 KFVNAILRKLLREGLPAVDTIKRKNKRYSVQYSLPVWLVKALIEEYGEERACAIFKSLYQ 177 Query: 175 PLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 I + + E A +L A L + + F EG +QD S+ + Sbjct: 178 RNKSSIRVVDLSEKEKLAQELEASASLIASSALVKDQGHFAAHSLFKEGRITIQDESSQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-Y 289 + VLD CAAPGGKT + ++ KVTALD+ +L+ ++ N +RLH+ Sbjct: 238 VAPALDLQGDEWVLDACAAPGGKTTHIASFLTTGKVTALDLYDHKLKLIQENANRLHVAD 297 Query: 290 AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 ++DA FD VLVDAPCS G IRR PD+ + +++ D V Q Sbjct: 298 KILTKKLDATRVFETFGPDAFDKVLVDAPCSGIGLIRRKPDIKYNKESVDFVSLQAIQLA 357 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L V+ GGI+V+S C++ +++ EVV + L+S P E VPL+ Sbjct: 358 ILDSVCQSVRKGGIIVYSTCTIIGKENFEVVDRFLKSHPN-FEQVPLDHK-------RKD 409 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I ITP++ E DGFF +R+ Sbjct: 410 ILENNCILITPELYES--------DGFFISCFKRI 436 >gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1] gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1] Length = 452 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 206/457 (45%), Gaps = 33/457 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 ++AR + +++ V+ ++ SL+ L G F L++ R P Sbjct: 9 PSLSAREAAVEVITQVLLQQGSLSTQLSKIQGKVDFDH-----HALLKEFCFGVCRHFPT 63 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++++ +L + Y + L + + Q+ ++ D+A ++ +VE + K++ K Sbjct: 64 LNSIALSLLAKPFEERDYDVYSTLLLGLYQLQHMSTPDHAAINESVELCRTLKKD-WATK 122 Query: 123 LVNSILRRVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI 178 L+N++LRR R+ E++ I+ +P+W +R++ + + +I +A + Sbjct: 123 LINAVLRRYQRDSEEIISEISSQPSVAFNLPKWLVKRIKKNWP-DSFESIVEASNERPPM 181 Query: 179 DLTVKFD---IETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V D ET+ L+ + E P + LP F G +QD + Sbjct: 182 CIRVNLDKVSRETYKSWLDEEGIVSRETLSIDSGLYIENPVPVFVLPKFESGFVSIQDEA 241 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 A + ++ VLD CAAPGGKT + ++TA+++ RLE++ NL RL Sbjct: 242 AQLSARIINPQQGERVLDACAAPGGKTGHLLEAMPNQELTAIELEPWRLERIEDNLTRLG 301 Query: 288 LYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 AE I D ++ K F+ VL+DAPCS+TG IRR+PD+ R DI + Q Sbjct: 302 YQAELIVSDAGDLNNWWDKTAFNKVLLDAPCSATGVIRRNPDIKINRKPADISELVEIQS 361 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 LL V+ GG ++++ CS+ +++ E V + L + +E VPLN+ Sbjct: 362 TLLDNVWQVVEEGGYLLYATCSIMPEENSEQVDRFLARTSNALE-VPLNTINSGFAMNIS 420 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I++ P G DGF+ ++ Sbjct: 421 NAKTDHGIQLLP--------KRDGHDGFYYCLFQKTA 449 >gi|99079930|ref|YP_612084.1| Fmu (Sun) [Ruegeria sp. TM1040] gi|99036210|gb|ABF62822.1| Fmu (Sun) [Ruegeria sp. TM1040] Length = 424 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 140/434 (32%), Positives = 211/434 (48%), Gaps = 23/434 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + LL V+ + LL E L D+ + + LR L R D V Sbjct: 11 ARRAAVALLDKVLGEG-----LLLSECQTQILERLEPADRARAQRLALQVLRALERADRV 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L ++ LR+ ++ A + VV+ V R + + LVN+ Sbjct: 66 LAKHLRKPP---ALHVRNALRLGTVELC-SGGAAHGVVNDIVNLVARHRRHGQLKGLVNA 121 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 +LR+V+ E ++ + +P+W + L +G + +LAI A +DL+ K Sbjct: 122 VLRKVATEGPGEWAKL-RVPRLPKWLRAPLVQAWGSDAMLAIEAAHFKGAPLDLSAKPGA 180 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + L M PTG +RL++ + +LPG+ +G WWVQDA+A++P QL VL Sbjct: 181 D--LAALEGAMTPTGSLRLQDA-GQVSALPGYEQGAWWVQDAAAALPAQLLNAARGERVL 237 Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 DLCAAPGGKT Q+ +GA+VTA+D+S+ RL +L+ NL R L A + + K Sbjct: 238 DLCAAPGGKTLQMAAAGAQVTAVDISENRLARLQENLTRTGLSATVVA---GDVFEQKGQ 294 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +DAVL+DAPCS+TGTIRRHPD+ +D Q ++L V+PGG +V+ C Sbjct: 295 YDAVLLDAPCSATGTIRRHPDLPHAKDGAGFGGLIELQAQMLAHAWGLVRPGGRLVYCTC 354 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL + E V+ +L P L S ++ EG +R+ PD +I Sbjct: 355 SLLPDEGECQVEDMLEMFPGARIGDRLKSLSGID---PSWITEEGGLRLRPDYWAEI--- 408 Query: 427 SSGMDGFFAVALRR 440 GMDGF+ L + Sbjct: 409 -GGMDGFYMAELVK 421 >gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1679] gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1679] Length = 445 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 116/466 (24%), Positives = 192/466 (41%), Gaps = 46/466 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L V + LL+ S L+Q+D L ++ T+ Sbjct: 1 MKKS--VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N Sbjct: 56 RLLEFYVAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIA-------GISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR R+ LQ IA +P W +RL + G E + + Sbjct: 114 TGKFVNGVLRNYQRQGAPDLQGIADPIERLSFKISLPLWMTKRLVDQIGYEETEKLGLSL 173 Query: 173 ISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 P + V + ++ A + + S F +GV Sbjct: 174 YQPSHASARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT G +V ALDV + +++ + Sbjct: 234 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 293 Query: 280 RCNLDRLHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL + A +MDA + FD +LVDAPCS G +RR PD+ + + D Sbjct: 294 EDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPD 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ Q ++L +K GI+ +S C++ K+++++VV L P + L + Sbjct: 354 ELANLPKIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTN 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +S E + + P DGFF LR+ Sbjct: 414 PMLQSSI------EEKMLTLYPHQFY--------TDGFFICCLRKK 445 >gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium hathewayi DSM 13479] gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium hathewayi DSM 13479] Length = 442 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 110/456 (24%), Positives = 204/456 (44%), Gaps = 31/456 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +G ++R + +L ++ K +L S ++ L ++++ + IV T+ + Sbjct: 1 MTNGNSSREIILDILLEILEKGSYSHIVLSQAL--SKYQYLDKQERAFISRIVEGTVEYT 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D V++ + + K ++ LLR+SV QILY+D V D AV + AV+ A++ K Sbjct: 59 LQLDYVINSYSSVKVKKMKPVIRTLLRMSVYQILYMDRVPDSAVCNEAVKLAQKRKFT-G 117 Query: 120 FAKLVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN +LR +SR K + + +P W + ++ YG+E ++++ A + P Sbjct: 118 LKGFVNGVLRGISRNKEQLKWPDDSVRYSMPSWILDMWKDTYGEEITVSMAKAFLKPSRT 177 Query: 179 DLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + ++ + + + + SL FA G+ VQD S Sbjct: 178 AVRCNLNRASKQEIMDSLKSQGVTVEETPLSETVLYLSKYDYLESLDAFASGLISVQDMS 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRL 286 +S ++ +D+C APGGK+ + VT D++++++ + N+ R Sbjct: 238 SSFVGEIADPKEGDVCIDVCGAPGGKSLHIADKLKGTGMVTVRDLTEQKVALIEENIARS 297 Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 D D + D VL D PCS G I R PD+ + + + + A Q Sbjct: 298 GFTNIRAEVHDALVPDQAWEGRADIVLADLPCSGLGIIGRKPDIKYRMTMEQLAELAALQ 357 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R++L S+VKPGG +++S C++D Q++EE L + P +N + Sbjct: 358 REILSVVQSYVKPGGKLIYSTCTIDSQENEENAAWFLENFPFDA----VNLEGKLGETLN 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A G I++ P + DGFF A ++ Sbjct: 414 AASMKSGMIQLLPGI--------HPCDGFFIAAFQK 441 >gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B str. Eklund 17B] gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium botulinum B str. Eklund 17B] Length = 438 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 41/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L V+ + +L E + L +RD+ L+ IV LR +D Sbjct: 1 MNCRNLAVKILKRVIDEGAYSNIILSNELNE---ANLEERDKALLTEIVYGVLRRKKTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + + + + +LRV++ Q+ +LD V YA + AV++AK+ + KL Sbjct: 58 LIIANFV-RDIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKI--SPEAGKL 114 Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR S++ + A W L YG++ I Sbjct: 115 VNGILRNFSKDPDDITINGNKINEYAYKFSFEPWMIRLLIKQYGEDLAKKIMVGLNQIPQ 174 Query: 178 IDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + V + L + SI P F +G VQD Sbjct: 175 TTVRVNDTKCEYNEVFEKLEEIGYCVEEGFMCPEAILIKGGSSIQENPLFKDGEITVQDE 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285 SA + L N++ VLDLC+APGGKT + + +V A D+ + +L ++ N +R Sbjct: 235 SAMLVAPLLELENDMKVLDLCSAPGGKTTHIAELLQNTGEVRAFDLHESKLGLIKENCER 294 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L I DA D VL+D PCS G IR+ P++ W + +++ + Sbjct: 295 LDLNNVKIEVGDATKLNADLVSYADRVLIDVPCSGLGIIRKKPEIKWNKTRENLREIIPV 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+++ ++K GG++++S C+L+K+++EE ++ L + + + Sbjct: 355 QREIMNNAWEYLKNGGVMIYSTCTLNKEENEENIEWFLNTHKDCKL-----KTIFIGKED 409 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G + I P+ MDGFF L + Sbjct: 410 NLIYNKNGTLTILPNA---------KMDGFFVAKLEK 437 >gi|281492501|ref|YP_003354481.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|281376165|gb|ADA65656.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 424 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M NAR + +L+ + LD DS LS D+ V A+V + Sbjct: 1 MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKAFVTALVYGVVSKK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + L + LL ++V QIL++D V A VD AV+ AKR + Sbjct: 56 DLLEWHITPFLKKEPK---PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKRRDG-QA 111 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177 A +N++LR R + + +P+ +++ +G +R I ++ P + Sbjct: 112 TANFINAVLRNFMRSEHRNEEPRDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + L + +++ + L + F G +QD ++ + Sbjct: 172 VSLRKIDPTVEISGTRASLLTESA---LIADSGNFAMTEEFQSGRITIQDETSQLVAPQL 228 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 VLD CAAPGGK+ + +TALD+ +L+ + N +R H+ Sbjct: 229 DLEGTEEVLDACAAPGGKSTHMAQYLTSGHITALDLYDHKLDLINQNAERQHVADKITTQ 288 Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA + FD +LVDAPCS G IRR PD+ + +++ D V Q ++L Sbjct: 289 KADATMIFEEFGSDKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFVDLQKIQLEILNSA 348 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GI+V+S C++ +++ +VV++ L S P E V ++S I EG Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVRQFLESHPN-FEQVEISSDKADMI-------KEG 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP+M DGFF +++ + Sbjct: 401 CIFITPEMY--------HTDGFFIAKFKKIGE 424 >gi|254461752|ref|ZP_05075168.1| rRNA methyltransferase RsmB [Rhodobacterales bacterium HTCC2083] gi|206678341|gb|EDZ42828.1| rRNA methyltransferase RsmB [Rhodobacteraceae bacterium HTCC2083] Length = 423 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 141/427 (33%), Positives = 225/427 (52%), Gaps = 20/427 (4%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL V+ + L+ L G L+ D+ + + + TLR L R+D ++ L Sbjct: 15 LLEQVLGEGKMLSEAL----GAPYMLRLAYDDRARAQRLASETLRSLERVDRIMKPFLRK 70 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 P ++ +LR++ ++ A + VV+ AV +K L N++LR+V Sbjct: 71 PPP---LAVHNVLRIATYELC-TGGAAHGVVNDAVSSVGANKRTEKLKGLTNAVLRKVVD 126 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 + E ++ + +P+W + L YG E + I + +DLT K D + + + Sbjct: 127 KGPEEWAKL-RVPRLPKWLRAPLAQAYGHEGIGDIERMHFTGAPLDLTPKGDAKALSEAV 185 Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 V+LPTG +R+K+ + + +L G+ G WWVQDA+A++PVQ+ +++DLC APG Sbjct: 186 AGVVLPTGSVRIKDAVQ-VSALAGYDAGDWWVQDAAAALPVQILHPQKGEAIIDLCCAPG 244 Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 GKT QL SGA VTA+D S RR++++R NL+R L AE + DA + +DAVL+D Sbjct: 245 GKTMQLAASGANVTAVDSSDRRMQRVRENLERAKLSAELV-VGDALETS--GRYDAVLLD 301 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+TGTIRRHPD+ +D + + Q ++L I+ +KPGG +VF CSL + Sbjct: 302 APCSATGTIRRHPDLPLVKDGSEFGELIELQAQMLSHAITLLKPGGRLVFCTCSLLPDEG 361 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E ++ +L P EL A + ++ EG +R+ PD + GMDGF Sbjct: 362 ECQIEDLLAIHP---ELEIDRDALKRDGIEDAWITEEGGLRLRPDYWAE----QGGMDGF 414 Query: 434 FAVALRR 440 + LR+ Sbjct: 415 YIALLRK 421 >gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1] gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1] Length = 429 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 199/453 (43%), Gaps = 40/453 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R+ + H+L V+ + +L L+ + F +S+R++ L++A+V LR+L Sbjct: 1 MST--PPRVAAVHVLERVLERGETLDEALE-----AQFSRVSERNRSLLQALVYGALRWL 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R++A + + R L+ LL + + L +A V AV+ A R Sbjct: 54 TRLEAQVATLTPRDDWRADPLLRGLLVIGAWEAQGLATPAHAAVSEAVDAA-RRLRRARA 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 A +VN++LR++ + A +P W + L + ++ A+++A + + L Sbjct: 113 AGMVNAVLRKLHKATPPGPADEAARYALPPWLLDHLRRAWPEDW-PAVAEAGNAHPPMTL 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLK---------ELPESIVSLPGFAEGVWWVQDASAS 231 + + L ++ P + LPGFAEG VQD +A Sbjct: 172 RFDRNRISREACLQSLAEQEIPAHPGEVAPSAATLHAPVPVARLPGFAEGWLSVQDEAAQ 231 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLY 289 + L VLD CAAPGGKT L+ VTALD S RRL ++R NL R Sbjct: 232 LAAPLLDPQPGDRVLDACAAPGGKTLHLLEHTPTAAVTALDRSSRRLRQVRDNLARGGYE 291 Query: 290 AED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A+ D + + F +L+DAPC+ +G IRRHPD+ W R DD + A QR L Sbjct: 292 AQCLAADAADPEAWWDGEPFQRILLDAPCTGSGVIRRHPDIKWLRGVDDPARMAAAQRHL 351 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + PGG ++++ CS+ +++E+VV L A + Sbjct: 352 LAALWRVLAPGGRLLYATCSIFPEENEQVVAGFLAEHAD---------AKPGPLAPVGRC 402 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G +I P GMDGFF L R Sbjct: 403 TGSGC-QILPG--------EHGMDGFFYACLER 426 >gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus bromii L2-63] Length = 446 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 94/459 (20%), Positives = 184/459 (40%), Gaps = 39/459 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ ++L + + L+ ++ LS D V A+V L +D Sbjct: 3 NTRNIALNVLLKIENEGAYSNIALNNAIKENR---LSGVDSSFVSALVYGVLERRITLDY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + + +LR+ + Q+L++D V D A V+ +V AK+ K + + + Sbjct: 60 IIRSYSKIPLRKIETKTKNILRLGILQLLFMDKVPDSAAVNESVNLAKKHKL-QKSSGFI 118 Query: 125 NSILRRVSREKIELL--------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 N ILR ++R + + + ++ +PE + N YG+ + + Sbjct: 119 NGILRNITRAEDKYTLPDEKDRARYLSVKYSVPENIVKLWVNSYGENNAEQLLASLNGRA 178 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 I V D +T KL+ + I + S+ L + G++ +QD Sbjct: 179 KICCRVNTLRTDADTLIKKLSDEGVVAEKIPFIDNALYLENTGSVERLRAYKSGLFHIQD 238 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ + V +LD+C+APGGK+ Q + + ++ + D+ +L+ + Sbjct: 239 ASSQLCVNFLDAKPRNIMLDVCSAPGGKSFSAAQYMNNRGRIFSCDMFDHKLKLISAGAK 298 Query: 285 RLHLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 RL + + DA D +L D PCS G + R P++ + +D + Sbjct: 299 RLGITCISTLLRDASTNDTALPVADRILCDVPCSGLGIMSRKPEIRY-KDDLISNDLSDL 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + GG +V+S C+L+ ++ + ++ L P +PL + Sbjct: 358 QYRILCASADNLAVGGKLVYSTCTLNPDENNKNTKRFLEEHPDFY-GIPLKLPNGITRAF 416 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 I + P G DGF+ + Sbjct: 417 DEEPYE---ITLMPHTC--------GTDGFYISLFGKKA 444 >gi|326407382|gb|ADZ64453.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis subsp. lactis CV56] Length = 424 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M NAR + +L+ + LD DS LS D+ V A+V + Sbjct: 1 MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKAFVTALVYGVVSKK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + L + LL ++V QIL++D V A VD AV+ AKR + Sbjct: 56 DLLEWHITPFLKKEPK---PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKRRDG-QA 111 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177 A +N++LR R + + +P+ +++ +G +R I ++ P + Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + L + +++ + L + F G +QD ++ + Sbjct: 172 VSLRKIDPTVEISGTRASLLTESA---LIADSGNFAMTEEFQSGRITIQDETSQLVAPQL 228 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 VLD CAAPGGK+ + +TALD+ +L+ + N +R H+ Sbjct: 229 DLEGTEEVLDACAAPGGKSTHMAQYLTSGHITALDLYDHKLDLINQNAERQHVADKITTQ 288 Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA + FD +LVDAPCS G IRR PD+ + +++ D V Q ++L Sbjct: 289 KADATMIFEEFGSDKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFVDLQKIQLEILNSA 348 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GI+V+S C++ +++ +VV++ L S P E V ++S I EG Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVRQFLESHPN-FEQVEISSDKADMI-------KEG 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP+M DGFF +++ + Sbjct: 401 CIFITPEMY--------HTDGFFIAKFKKIGE 424 >gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1] gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1] Length = 447 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 105/455 (23%), Positives = 186/455 (40%), Gaps = 33/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR ++ L + L + D+ L +VN LR+ R+D Sbjct: 1 MKAREIALLTLQETDTQAKKSEQSLHRLLNRHKP---DKNDRSLATELVNGVLRYRLRLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ L + L+ +LR+ Q+L+LD + +A VD V A + K RH A + Sbjct: 58 FIISLSYHHDLKKAAPVLRNILRLGAYQLLFLDKIPGWAAVDECVSLAVKYKG-RHIAGI 116 Query: 124 VNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LRR++ E L +R++ PEW +R YG+E +A+ + Sbjct: 117 VNGVLRRIASEKGSLDEILKNEPLGRRLSLEYSHPEWLLQRWLKHYGEELTVAMLSSNNR 176 Query: 175 PLYIDLTVKFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L V T + + + P G+ VQ+ Sbjct: 177 APLLSLRVNTLKTTPEIMGKALKDASVTFTKAAPEQFMLTHDFTACEPFIHLGLVTVQNP 236 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 + ++P L + + ++LDLC+APGGK + + + + A+D + + EK+ Sbjct: 237 TQALPCLLLDPMPDETILDLCSAPGGKATFMAELMKNKGSILAVDRYRNKCEKVMRRAQA 296 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + + I +A + P K A+L+D PC+ TG + + PD+ W + + Q Sbjct: 297 LGISIIETIADNAETFQPDKQPSAILLDVPCTGTGVLGKKPDLRWRITPQQLDELTILQG 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 KLL + PGG++V++ CS++ ++++ + + L P +M Sbjct: 357 KLLDHAAGLLNPGGVLVYATCSIEPEENQLQIDRFLERHPDFSRDHSPVPLPVMFSEMPS 416 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A P + G G DG FA L + Sbjct: 417 A----------PGAFITLPGNHEGYDGGFAQRLLK 441 >gi|322374811|ref|ZP_08049325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C300] gi|321280311|gb|EFX57350.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C300] Length = 437 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 129/457 (28%), Positives = 205/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V+ + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARSLALAVLEDVLVNQAYSNIALNKHLKGSQ---LSVADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + ++AVV+ AVE AK K + Sbjct: 58 LTLEWYLSHFIQ-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKARK--KG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI + Sbjct: 115 SEKLVNAVLRRILREGWPDIDSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A P L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTNLSRKEEIKALLEATDSPLAATGLVKEQGHFAGHDLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ KVTALD+ +L+ ++ N +RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAERLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ K FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFEKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter capsulatus SB 1003] gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter capsulatus SB 1003] Length = 421 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 159/417 (38%), Positives = 226/417 (54%), Gaps = 17/417 (4%) Query: 25 LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 L L L L+ D+ + I TLR L R DA+L L + P L Sbjct: 19 LQERLTLAEQAGELAALAPPDRARAQRIALATLRNLTRADAMLKPHLRKAPP---PDLHV 75 Query: 85 LLRVSVAQILYLDVADYAVVDLAVEQAKRDK-ENRHFAKLVNSILRRVSREKIELLQRIA 143 LLR+ +I L A + V D V A+ + FA L+N++LR+++ + + Sbjct: 76 LLRLGTVEICALGEAPHGVTDALVTLARSGGQKTEGFAGLINAVLRKIASDTDRWARLD- 134 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +P W + RL + YGK V+ + A ++ DL+VK + ETWA KL A +LPTG + Sbjct: 135 -PPALPGWLRGRLMSAYGKVAVMRMEAAHLAGAPTDLSVKAEAETWAAKLGAELLPTGSL 193 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG 263 RL + I LPG+A G WWVQDA+A++P ++ VLDLCAAPGGKT QL+ +G Sbjct: 194 RLAQA-GQITELPGYATGDWWVQDAAAALPARVLNAQPGEHVLDLCAAPGGKTLQLLAAG 252 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 A+VTALDVS RL++L NL R + AE + DA D+ P FDA+L+DAPCS+TGTIR Sbjct: 253 ARVTALDVSAPRLDRLEENLARCGMRAETV-VADALDWTPAAPFDAILLDAPCSATGTIR 311 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 RHPD+ + +D I + A Q LL + ++KPGG +V++ CSL ++ E + L Sbjct: 312 RHPDLPFVKDASGIKELAALQAALLDRAPGWLKPGGRLVYATCSLLPEEGEAQIAAALSR 371 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + LVP+ + L+ G +R+ PD G+DGFF LRR Sbjct: 372 HPG-LRLVPITAPGLD----PDWLTETGCLRLRPDFW----PDRGGLDGFFIAVLRR 419 >gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium U0317] gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium U0317] Length = 445 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 116/466 (24%), Positives = 192/466 (41%), Gaps = 46/466 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R ++ L V + LL+ S L+Q+D L ++ T+ Sbjct: 1 MKKS--VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N Sbjct: 56 RLLEFYVAPLIAKA-KKVDDWVKMLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172 K VN +LR R+ LQ IA +P W +RL + G E + + Sbjct: 114 TGKFVNGVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSL 173 Query: 173 ISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 P + V + ++ A + + S F +GV Sbjct: 174 YQPSHASARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT G +V ALDV + +++ + Sbjct: 234 IQDESSMLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLI 293 Query: 280 RCNLDRLHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL + A +MDA + FD +LVDAPCS G +RR PD+ + + D Sbjct: 294 EDNAARLGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPD 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ Q ++L +K GI+ +S C++ K+++++VV L P + L + Sbjct: 354 ELANLPKIQLEILESCAPTLKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTN 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +S E + + P DGFF LR+ Sbjct: 414 PMLQSSI------EEKMLTLYPHQFY--------TDGFFICCLRKK 445 >gi|15673871|ref|NP_268046.1| rRNA methylase [Lactococcus lactis subsp. lactis Il1403] gi|12724923|gb|AAK05987.1|AE006418_7 rRNA methylase [Lactococcus lactis subsp. lactis Il1403] Length = 424 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M NAR + +L+ + LD DS LS D+ V A+V + Sbjct: 1 MTK--NARQTALDVLNDIFGNDAYANISLDRNLRDS---ELSTVDKAFVTALVYGVVSKK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ + L + LL ++V QIL++D V A VD AV+ AKR + Sbjct: 56 DLLEWHITPFLKKEPK---PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKRRDG-QA 111 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLY 177 A +N++LR R + + +P+ +++ +G +R I ++ P + Sbjct: 112 TANFINAVLRNFMRSEHRNEEPKDWETKYSMPKLLLDKMVRQFGGKRTGEILESLEKPSH 171 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + L + +++ + L + F G +QD ++ + Sbjct: 172 VSLRKIDPTVEISGTRASLLTESA---LIADSGNFAMTEEFQSGRITIQDETSQLVAPQL 228 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 VLD CAAPGGK+ + +TALD+ +L+ + N +R H+ Sbjct: 229 DLEGTEEVLDACAAPGGKSTHMAQYLTIGHITALDLYDHKLDLINQNAERQHVADKITTQ 288 Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA + FD +LVDAPCS G IRR PD+ + +++ D V Q ++L Sbjct: 289 KADATMIFEEFGSDKFDRILVDAPCSGIGLIRRKPDIRYRKESSDFVDLQKIQLEILNSA 348 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GI+V+S C++ +++ +VV++ L S P E V ++S I EG Sbjct: 349 SKSLKKSGIMVYSTCTIFDEENFDVVRQFLESHPN-FEQVEISSDKADMI-------KEG 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP+M DGFF +++ + Sbjct: 401 CIFITPEMY--------HTDGFFIAKFKKIGE 424 >gi|254447515|ref|ZP_05060981.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium HTCC5015] gi|198262858|gb|EDY87137.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium HTCC5015] Length = 431 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 116/450 (25%), Positives = 192/450 (42%), Gaps = 35/450 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + ++ V ++ SL+ L L +RD+ L + + +LR+ R + Sbjct: 1 MNARQQALRAITSV-QQGQSLSAALPDLLAP-----LPKRDRGLCQELSYGSLRYYHRYE 54 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + +L K LQ +L + + Q+ + + D+A V V K++ ++ Sbjct: 55 WLSQQLLKKPFKHKDSDLQAVLALGLYQLFEMRIPDHAAVSNTVALVNGLKKS-WAKGVI 113 Query: 125 NSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R++ E +IA +P W LE + + + P Sbjct: 114 NAVLRNALRQRDEWRGKIADEEAAQHSLPRWLLNFLEGNWPDQWTGIAEASLAKPPMTLR 173 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASIPV 234 + + +L+A+ + + +I LPGFA+G VQDA+A Sbjct: 174 ISGGARDQYRQRLSALDIECHAPERADWALTITPPVDTDVLPGFAKGEASVQDAAAQWAA 233 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAED 292 L VLD CAAPGGKT ++ + + ALD+ +RL ++ NL RL AE Sbjct: 234 PLLNPQAGERVLDACAAPGGKTGHMLEWASALDLVALDLEPKRLARVEQNLTRLGRSAEL 293 Query: 293 IIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D + + FD +L+DAPCS++G IRRHPD+ R +DI Q + L Sbjct: 294 LSADLRDTARWWNGQAFDRILLDAPCSASGVIRRHPDIKLLRQPEDINALVELQAQCLDA 353 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 S +K GG ++++ CSL K +++ V++ L L + ID Sbjct: 354 AWSTLKEGGTLLYATCSLFKAENQHQVREFLERHSDAA-LDAFSETALPGIDTGYGQ--- 409 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P DGFF LR+ Sbjct: 410 ---QFFPG-------GPFNGDGFFYARLRK 429 >gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15] gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15] Length = 446 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 116/458 (25%), Positives = 188/458 (41%), Gaps = 38/458 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + L + + T + A +S+ D L +V TL +D Sbjct: 1 MNVRDAAVTTLLKIGQGGAFSTISVHQMLEKRA---ISKADVGLYTELVYGTLSRELTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L+ L + ++ LLR+SV Q+ YLD + D+AV++ AVE AK + H AK+ Sbjct: 58 YILEPFLTKQ-KKLDPFMRPLLRMSVYQLFYLDRIPDHAVINEAVEIAKT-RGKPHIAKV 115 Query: 124 VNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 VN +LR V R RI+ + P W +R +G+E + P Sbjct: 116 VNGVLRNVLRTGKPDFSAIPSTVDRISIETSHPVWLVKRWLELFGEEETWKMCRLNNEPA 175 Query: 177 YIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + A L+ + S+ G +QD Sbjct: 176 PVTVRVNRTRTDQQEAIVLLEEQGVIAKPAHAAPDGLEIVSGSVQQTDLLERGYLSLQDE 235 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRL 286 S+ + G VLD CAAPGGK + + ALD+ +++ L RL Sbjct: 236 SSMLVAAALGAQPTDHVLDSCAAPGGKAMHIAEGLATGSLVALDLHPHKVKLLEKQATRL 295 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L+ +DA FD +LVDAPCS G IRR PD+ WT+ +D+ + Sbjct: 296 GLHNVQAEALDARQAGTRFETASFDRILVDAPCSGLGVIRRKPDIKWTKRPEDLTQLPVI 355 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR++L + VKP G V+S C++D ++E+ + +L + E + Sbjct: 356 QRQILEAVLPLVKPDGTFVYSTCTMDPLENEQQTEFILSQGFVFDETFKTRMPEA----V 411 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ P L G DGF+ A +++ Sbjct: 412 QSLIGERAELKLLPTSL--------GTDGFYIAAFKKM 441 >gi|56698200|ref|YP_168572.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria pomeroyi DSS-3] gi|56679937|gb|AAV96603.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria pomeroyi DSS-3] Length = 423 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 141/443 (31%), Positives = 215/443 (48%), Gaps = 25/443 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S AR + LL ++ + LL G A L ++ + + TLR Sbjct: 1 MADSATQARQSAIDLLDQILGEGR----LLSECLGAGALDRLPPEERARAQRLTLDTLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L + P S++ LR+ ++ + + A + VV VE R + + Sbjct: 57 LERADRLLKPHLQKAPP---LSVRNALRLGTVELAHGE-AAHGVVHSMVEIVGRSRRHGR 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LR+V+ + R+ + +P W ++ L +G V A+ A +D Sbjct: 113 LKGLVNAVLRKVAADAPSAWGRL-RVPRLPRWLRDPLVQAWGAPAVAAMEAAHFVGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 LT+K ++ + +LPGFA G WWVQDA+A++PVQL Sbjct: 172 LTLKSGASAPGGEVLPTGSVR-----LHDAGQVSALPGFAAGDWWVQDAAAALPVQLLDP 226 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 SVLDLCAAPGGKT QL +GA+VTALD+S+ R+ ++R NL R L AE ++ Sbjct: 227 QPGESVLDLCAAPGGKTMQLAAAGARVTALDISEGRMARVRENLARTGLSAETVV---GD 283 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 +DAVL+DAPCS+TGTIRRHPD+ +D + Q +++ + V+PGG Sbjct: 284 ALEQGGQYDAVLLDAPCSATGTIRRHPDLPLAKDGSEFGALIELQAQMIAHAWTLVRPGG 343 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E V++ L P + +A ++ EG +R+ PD Sbjct: 344 RMVFCTCSLLPDEGEVQVEEALTLYPD---MSTDRAALGLPGIDPAWITEEGGLRLRPDY 400 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 + GMDGF+ LR+ Sbjct: 401 WSE----RGGMDGFYMAVLRKAA 419 >gi|315612653|ref|ZP_07887565.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sanguinis ATCC 49296] gi|315315240|gb|EFU63280.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sanguinis ATCC 49296] Length = 437 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 128/459 (27%), Positives = 205/459 (44%), Gaps = 38/459 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS+ D+ LV IV T+ Sbjct: 1 MTKVETARSLALAVLEDVFINQAYSNIALNKHLKGSQ---LSEADKSLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + ++AVV+ AVE AK K + Sbjct: 58 LTLEWYLSHFIE-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKERK--KG 114 Query: 120 FAKLVNSILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI + Sbjct: 115 SEKLVNAVLRRILREGWSDIDSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I + E L A P L + FAEG +QD S+ Sbjct: 175 LVRNKASIRVADLSRKEEIKAVLEATDSPLAATGLVKEQGHFAGHDLFAEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ KVTALD+ +L+ ++ N +RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAERLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFSRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +G I ITP++ G DGFF R++ + Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKISE 437 >gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175] gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175] Length = 440 Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 123/461 (26%), Positives = 200/461 (43%), Gaps = 48/461 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + LL+ V + + T L RD+ L+ + T++ +D Sbjct: 3 NVRDICVELLTNVEKNQAYSTVAFQNVLQKHK---LDVRDRGLLTELFYGTIQRKLTLDF 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + + LLR++V Q+ YLD V D+A + AV+ AK+ + ++ AK V Sbjct: 60 YLKPFIEKQ-KKMELWVLSLLRMTVYQMAYLDRVPDHAAIFEAVQIAKK-RGHQGIAKFV 117 Query: 125 NSILRRVSREKIE-------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR V R + +R++ +P W E L YG E I + + Sbjct: 118 NGVLRNVQRSGFDGVSSIKDERERLSVEFSMPRWIVELLFEQYG-EVAREIFPSLNIAPH 176 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDAS 229 + ++ +E L + +L ++ F +G+ VQD S Sbjct: 177 LSARIQNPEMSVEEVQTLLREEGVMVQESKLSPRAVIVKEGDLLGSKAFKDGIVTVQDES 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLD 284 +S+ Q+ + VLD CAAPGGKT G V ALD+ + +L K+ N Sbjct: 237 SSLVAQVGKLQHGDKVLDTCAAPGGKTTHFASYLVAEEGGLVEALDLHENKLRKIHQNAK 296 Query: 285 RLHLYA-EDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + +DA K+ FDAV VDAPCS G +RR PD+ +T++++D+ K Sbjct: 297 RLGVEDRIHTHALDARKVGELFEKESFDAVFVDAPCSGLGLMRRKPDIKYTKNSEDLTKL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + VK G +++S C+++K ++EEVV K L + P EL P+ Sbjct: 357 QIIQLEILASVATMVKNSGKLIYSTCTINKSENEEVVLKFLANHP-DFELQPIEEF---- 411 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + I P DGFF + R Sbjct: 412 ----GCTNENPMLTILPHEY--------HTDGFFIARMVRK 440 >gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp. MED92] gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp. MED92] Length = 432 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 210/456 (46%), Gaps = 42/456 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R +++ L+ +++ + SL A +D+ L+R + TLR+ Sbjct: 1 MTK--NIRTLAAQALTPLLQNKGSLNTKYPAIERRCA-----DKDRGLLRELCYGTLRYY 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ VL + K ++ L V + QI + + +A + VE K + Sbjct: 54 PQLNRVLQLLQNRPFKYKDIDVRALALVGLYQIQHTRIPAHAAIHETVEACKELNKP-GA 112 Query: 121 AKLVNSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 AKL+N+ILRR RE+ ++ + + EW +L+N + + AI +A Sbjct: 113 AKLLNAILRRFQREQDDITSELKGEDSYLYNHSEWMIAKLKNNWP-DHWQAILEANNEQA 171 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDA 228 + L V E + +LN V+ + + ++ SLPG+ G + VQD Sbjct: 172 PLTLRVNRRSISREEFQQQLNPVIDSDPTVFSDQGLRLAESVNVESLPGYQVGAFSVQDE 231 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDR 285 +A + L VLD CAAPGGK ++ S V A+++ +R E++ NL R Sbjct: 232 AAQLSADLLDLKPQQRVLDACAAPGGKLCHILESEPKLASVEAVELEAKRAERIEENLKR 291 Query: 286 LHLYAE-DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L L A I + + L+D +L+DAPCS+TG IRR+PD+ + R +DI + A Q Sbjct: 292 LRLKATLHIGDASEQSWWDGDLYDRILLDAPCSATGVIRRNPDIKFLRKGEDIHELAQIQ 351 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L + +KPGG ++++ CS+ Q++E +++ + ++ L +ID + Sbjct: 352 SDILANCWAMLKPGGKLLYATCSIFPQENERQIKRFISNNSDAKHL---------AIDAS 402 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E ++ P G DGF+ L + Sbjct: 403 WGIEREFGRQLFP--------EKGGHDGFYYALLEK 430 >gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145] gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145] Length = 437 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 122/460 (26%), Positives = 194/460 (42%), Gaps = 49/460 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G ++R V++ + V+ + SLT L LS D+ L +AI +R+LP Sbjct: 6 STGAHSRAVAAQAIHAVLEQGQSLTQALTTYSE-----QLSAEDKRLAQAISYGVMRYLP 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + + L L K +Q LL V Q+ L D+A V VE +K K + + Sbjct: 61 VLTEKVSGKLDKPLKGKNQIIQSLLLVGTYQLFKLRTKDHAAVSATVEASKLLKR-KALS 119 Query: 122 KLVNSILRRVSREKIELLQRIAGIS------IIPEWFKERLENFYGKERVLAISDACISP 175 LVN +LR+V RE P W +E++ YG E+ A+ A S Sbjct: 120 GLVNGVLRQVLREAPTRNDDGERELPSAEGGNHPRWLREKIRAAYG-EKAEAVFTANDSQ 178 Query: 176 LYIDLTV---KFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + L ++ + L + P + LP F G VQ Sbjct: 179 PPLWLRANRRHTNVTDYTALLAENGIEAVADSQASDAIRLVKPVPVTKLPHFEAGWVSVQ 238 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D SA + + VLD CAAPGGKT + A+DV ++RLE++ NL Sbjct: 239 DRSAQLAADMVDAQPEHRVLDCCAAPGGKTVHLLERTEFQTPLIAIDVDEQRLERVSENL 298 Query: 284 DRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R L +D + K+ FD +L+DAPCS+TG IRRHPD+ W R + DI + Sbjct: 299 YRADLSCEVVCADVLDLDSWWDKQPFDRILLDAPCSATGVIRRHPDIKWLRRSSDIDQLV 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+ +L + +KPGG ++++ CS+ +++ E + L L+ + + Sbjct: 359 ELQQSMLERLWPTLKPGGQLIYATCSILPEENSEQISHFLGQH-SDANLIAIEANRP--- 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ P + DGFF + +L Sbjct: 415 ----------MLQLLPG--------ENDGDGFFYAKIEKL 436 >gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium siraeum 70/3] Length = 439 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 97/462 (20%), Positives = 196/462 (42%), Gaps = 45/462 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ AR ++ LL + + +LD + + +RD+ A+ L Sbjct: 1 MKT---ARQITLDLLIRMDTQGAYSNIILDHAFTQNDA---DRRDKAFSAALFYGVLERR 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ + + K ++ ++LR+ Q+L+++ V D A V+ +V + Sbjct: 55 MTLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTK- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 VN+ILR R + ++ + P+W ++ + G++R + + ++C Sbjct: 114 AKGYVNAILRTFLRNEKQIDYGNLTGEAKLSIEYSCPKWLVKKWNSELGEQRAMQMINSC 173 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVW 223 I V + +L + + L + + I + +G++ Sbjct: 174 FGRPPIYARVNTVRYAVDDVIGELESEGISAAKNSLIDACIELANTKGIEQSSAYKKGMF 233 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD S+ I ++ + N +V+DLC+APGGKT + ++ + D+ ++ + Sbjct: 234 HIQDISSQICCKIAAPMFNETVVDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIA 293 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL L E DA + P D V+ D PCS G IRR P++ + + + Sbjct: 294 NTAKRLGLTIITAAENDATKFNPDIPKADRVVCDVPCSGLGVIRRKPEIKY-KPMKQLET 352 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 QRK++ +VKPGG +V+S C++ + +++++V + L+ V +V Sbjct: 353 LPDTQRKIINNAAEYVKPGGTLVYSTCTVSRTENDDIVDEFLKEHSDFVPVV-------- 404 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + +G+ R DGFF LR++ Sbjct: 405 -VPLNIKGLEDGYKRTM-------LPCDVNGDGFFTATLRKV 438 >gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999] Length = 442 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 36/457 (7%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M S G R ++ +L ++ K +S L RD+ ++ +V LR Sbjct: 1 MSSPLGQQLRADAAWVLFQILEKGVSSKQALAQRLEHYQ-----GRDRAWLQEMVFGCLR 55 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 LP + L +L L +K L+ L+ + + QI Y V+++A V V A K Sbjct: 56 TLPTLQFWLRGLLDKPLKGRKKILEHLILIGLYQIAYSRVSEHAAVSETVGAADLLKGTT 115 Query: 119 HFAKLVNSILRRVSREKIELLQRI--AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 L+N+ILR RE + A + +P W + + N Y + L I ++ Sbjct: 116 -LKALINAILRTFIREDVANTAPESLAAQAGMPNWIFKAINNHYAEHAQLVIDESNQKAP 174 Query: 177 -YIDLTVKF-DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 ++ + E +L A+ + T + PG+ +G + VQD Sbjct: 175 LWLRVNPAHISPEGMQTQLQAMGIDTELKNTHPDAVQCLKSGDVTQFPGYDKGWFAVQDG 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDR 285 +A + QL VLD CAAPGGKTA ++ S + A+D RL ++ NL R Sbjct: 235 AAQLAAQLLDVQPGHRVLDCCAAPGGKTAHILASQPELEECVAIDNDPSRLVRVEENLAR 294 Query: 286 LHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L A I D + + FD +L+DAPCS+TG IRRHPD+ W R DI Sbjct: 295 LGHEATLICAAAEDVEGWYGGEPFDRILLDAPCSATGVIRRHPDIRWLRQASDIAPLVAI 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL+Q ++PGG ++++ CS+ +++ + +Q + P V L P+ ++ + Sbjct: 355 QAELLMQMWQILQPGGKLLYATCSILPEENSQQIQTFIAQHPEAVVL-PIPTSLSELT-- 411 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ E +++ P + MDGF+ L++ Sbjct: 412 --TVNDEFGLQVLPGDAD--------MDGFYYTLLQK 438 >gi|307704312|ref|ZP_07641230.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK597] gi|307622148|gb|EFO01167.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK597] Length = 437 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFINQAYSNIALNKHLKGSQ---LSVADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YL+ + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK--VRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLGRKEEIQALLEASDSSLSPSGLVKEQGHFADHDLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + N VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGNEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L + P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLENHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|220925067|ref|YP_002500369.1| sun protein [Methylobacterium nodulans ORS 2060] gi|219949674|gb|ACL60066.1| sun protein [Methylobacterium nodulans ORS 2060] Length = 448 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 171/446 (38%), Positives = 231/446 (51%), Gaps = 16/446 (3%) Query: 2 KSGMNARLVS----SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 +G+ AR ++ + LL R L +LD L +D L RAI T Sbjct: 9 TAGLAARRLAHASVADLLGA--RSGTVLDDVLDPAAAR---ASLGAQDLGLARAIAAATF 63 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 R L I L + LP + L LL AQILYL+V D+A VDL+V AK + Sbjct: 64 RHLGVIRHALAARMTQGLPEDQPRLLALLATGAAQILYLNVQDHAAVDLSVRIAKNEAAL 123 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACIS 174 RH + LVN++LRR++RE+ + Q P W R +G AI++A + Sbjct: 124 RHLSGLVNAVLRRIAREQAAIRQEGDADPLGLGTPAWLARRWSAAHGAATARAIAEAHMR 183 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 +DLTVK D ETWA +L A +LPTG +RL + + L G+ G WWVQDA+A++P Sbjct: 184 GAPLDLTVKADPETWAERLGARLLPTGSLRLDDARTPVPQLAGYDSGAWWVQDAAAALPA 243 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 +L V DLCAAPGGKTAQL +GA V A+D S+ RL +L NL RL L A + Sbjct: 244 RLLAVRPGERVADLCAAPGGKTAQLAAAGAAVVAVDRSEARLRRLSENLARLGL-AAETR 302 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 +DA FDA+L+DAPCS+TGTIRRHPDV WT+ D+ + A Q KLL + Sbjct: 303 AVDALTLPDDDQFDAILLDAPCSATGTIRRHPDVAWTKREGDLPRLAALQGKLLDKAARL 362 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 ++PGG +V+ CSL+ ++ E L L A + +S G +R Sbjct: 363 LRPGGRLVYCTCSLEPEEGEAQADAFLARHSDFARL---PIAAEEVGGETGFVSERGDLR 419 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 P G G+DGFFAV LR+ Sbjct: 420 TLPSHWPDAAGGRGGIDGFFAVRLRK 445 >gi|293364893|ref|ZP_06611610.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037] gi|307703146|ref|ZP_07640092.1| ribosomal RNA small subunit methyltransferase B [Streptococcus oralis ATCC 35037] gi|291316343|gb|EFE56779.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037] gi|307623221|gb|EFO02212.1| ribosomal RNA small subunit methyltransferase B [Streptococcus oralis ATCC 35037] Length = 437 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 128/459 (27%), Positives = 206/459 (44%), Gaps = 38/459 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V+ + L+ S F S D+ LV IV T+ Sbjct: 1 MTKVETARSLALAVLEDVLVNQAYSNIALNKHLKGSQF---SAADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + ++AVV+ AV+ AK K + Sbjct: 58 LTLEWYLSHFIQ-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVDLAKARK--KG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI + Sbjct: 115 SEKLVNAVLRRILREGWPDIDSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFKSL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A P L + FAEG +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEAADSPLAATGLVKEQGHFAGHDLFAEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ KVTALD+ +L+ ++ N +RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAERLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +G I ITP++ G DGFF R++ + Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKISE 437 >gi|160880621|ref|YP_001559589.1| sun protein [Clostridium phytofermentans ISDg] gi|160429287|gb|ABX42850.1| sun protein [Clostridium phytofermentans ISDg] Length = 453 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 100/468 (21%), Positives = 206/468 (44%), Gaps = 46/468 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + + + ++ +++ + ++ LS++D+ + + L R+D Sbjct: 1 MNAREIVLTMCLKINEDKLPSHVVINETLKN--YKDLSKQDRAFISRLCLGVLEQKLRLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L+ + + K ++ +LR++ QI +++ + D A D AV+ K+ + Sbjct: 59 YDLERFSKIKVKKMKPVIRNVLRIAAYQIEFMEQIPDSAACDEAVKLVKKRGLG-GLSGF 117 Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACI 173 VN ILR +SRE + + +P+ E + +E+V + A + Sbjct: 118 VNGILRNLSREFQKANGFDISKLNEIERLSYQYSMPKELVEFWLKSFRREQVEEMLQAFL 177 Query: 174 SPLYIDLTVKFDIETWAHKLNAV---------MLPTGGIRLKELPESIVSLPGFAEGVWW 224 P + + T ++ + + S+ L F +G + Sbjct: 178 EPKDTSIRINESKITIDELVDNLVKDGVEVRDGAYLTNAKRITSYNSLPVLDSFQKGYFQ 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---------IVSGAKVTALDVSKRR 275 VQD S+ + + G ++D+CAAPGGKT + V A D + R+ Sbjct: 238 VQDESSMMVGLIAGIKAGDYIIDVCAAPGGKTLHAADLLLVAGGEKNPGHVDARDKTDRK 297 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + + NL+R+ + DA K+ D +L D PCS G I + PD+ + Sbjct: 298 VALIEQNLERIGYQNVSVKVFDALVPDDSVKEKADIILADLPCSGLGVIGKKPDIKYNMT 357 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + + + A QR +L +S++KPGG+++FS C+++ +++E+ ++ + + ++L P Sbjct: 358 KEMMSELAKLQRNILTVVVSYLKPGGVLIFSTCTINPEENEDNIRFITET----LKLQPE 413 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + ++ S +G++++ P+ SG+DGFF R++ Sbjct: 414 SIDTYLPENLQCETSKQGYLQLLPN--------KSGVDGFFISRFRKV 453 >gi|254420361|ref|ZP_05034085.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3] gi|196186538|gb|EDX81514.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3] Length = 445 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 159/440 (36%), Positives = 234/440 (53%), Gaps = 19/440 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR+V+ LL+ + KR L L A R L D+ RA+ LR L I Sbjct: 24 GVEARVVAGILLNAALEKRNGLDEALSQ----PAARALEPVDRAFARAVAMAALRRLGEI 79 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D +L+ L S P +++ L+R+++AQ L L+ +A V AV+ A+RD + R + L Sbjct: 80 DQILNRRLQKSPPE---AVRTLMRIALAQTLVLETPAFAAVSTAVKLAERDPKTRPYKNL 136 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN++LR V R+ L S +P+W R + YG+ + ++ A DL++K Sbjct: 137 VNAVLRGVGRDGPGLTTA---ESNLPDWIAARWKATYGEAALTGLALAAREEPATDLSLK 193 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELP-ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 ++ A G ++ + + PGF +G WWVQDA+A++P +L G Sbjct: 194 PGVDPAAVAAAVEGEALEGGTVRTGRRGDVATWPGFDDGDWWVQDAAAAVPGRLLGVKPG 253 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 + LD+CAAPGGKT QL +GA V ALD S RL++L NL+R L AE I A D+ Sbjct: 254 ETALDMCAAPGGKTLQLAAAGASVVALDRSAPRLKRLSQNLERTGLTAEVIAVP-AEDWE 312 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FDAVL+DAPC++TGT RR+P+VL ++ K A Q +LL VKPGG +V Sbjct: 313 DDRSFDAVLLDAPCTATGTFRRNPEVLRATKPAEVAKLADVQHRLLDAAAERVKPGGRLV 372 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL++++ E V LR +P + +A AL+PEGW+RI P M + Sbjct: 373 YCTCSLEREEGETQVIAFLRRNPGFRTVAADPAALGAP---PEALTPEGWLRILPSMWAE 429 Query: 423 IDGVSSGMDGFFAVALRRLI 442 G+DGFFA L R+ Sbjct: 430 ----HGGLDGFFAAKLERIA 445 >gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum 5521] gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum 5521] gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium butyricum E4 str. BoNT E BL5262] Length = 438 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 202/457 (44%), Gaps = 41/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L+ V+ + +L E + L+ +D+ L+ IV LR +D Sbjct: 1 MNCRKLAVKILNRVLNEGAYSNIILSKELNEV---ELNDKDKALLTEIVYGVLRRKRTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + + ++ +LRV++ Q+ +LD + YA + AVE+AK EN +KL Sbjct: 58 VIIANFV-KDIKLMDKNILNILRVAIYQMNFLDKIPTYAACNEAVEEAKEISEND--SKL 114 Query: 124 VNSILRRVSREKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR ++ ++ A W L YG+ I + Sbjct: 115 VNGILRSFTKNPDDINVPGNKIDEYAYKFSFEPWMIRLLIKQYGENVAKKIMSGLNTIPK 174 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + + V D + KL + + +SI + P F EG VQD Sbjct: 175 VSIRVNELNSDYDEVYEKLEEMEYEISEGVICPEAINIKGGKSIENNPLFKEGKITVQDE 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 SA + L ++V+DLC+APGGKT + + KV A D+ + +L ++ N +R Sbjct: 235 SAMLVAPLLDLKEGMTVVDLCSAPGGKTTHIAEILGNTGKVLAFDLHESKLGLIKENCER 294 Query: 286 LHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + DA + + D VL+D PCS G IR+ P++ W + +D+ + Sbjct: 295 LGITNVTTFAQDATKLNAELVASTDRVLLDVPCSGLGIIRKKPEIKWNKKRNDLREIIPV 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+++ ++K GG++++S C+L+K+++EE ++ + + + Sbjct: 355 QREIMNNAWQYLKQGGVMIYSTCTLNKEENEENIEWFVNNHEDCEV-----KRIFVGKQD 409 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S EG + + P+ MDGFF L + Sbjct: 410 NLVYSREGLLTVMPN---------ENMDGFFIAKLEK 437 >gi|126736247|ref|ZP_01751990.1| rRNA methyltransferase RsmB [Roseobacter sp. CCS2] gi|126714413|gb|EBA11281.1| rRNA methyltransferase RsmB [Roseobacter sp. CCS2] Length = 424 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 150/441 (34%), Positives = 231/441 (52%), Gaps = 20/441 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M +G+ AR + HLL + + L+ G A L D+ + + TLR Sbjct: 1 MTQTGLPARRSAHHLLMQITGEGR----LMAELIGGGALARLENDDRARAQRLATETLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L L + P + LR+ V ++ A + VV+ VE R+K + Sbjct: 57 LDRADRMLKPYLKKTPPD---HVMNALRLGVIELC-SGEAAHGVVNAYVEIVARNKRTQA 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L N++LR+++ E E + A I + P W ++ L +G++ V A+ A + +D Sbjct: 113 MKGLTNAVLRKIAAEGPEGWNKRA-IPLTPGWLRQPLVAAWGRDAVAAMEAAHFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L+VK D A L+ +LPTG +RL+ + +L G+A G WWVQDA+A+IPV+L G Sbjct: 172 LSVKVDAAAVAKALDGTVLPTGSVRLQNA-GQVSTLKGYATGDWWVQDAAAAIPVKLLGD 230 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + L VLDLCAAPGGK QL GA+VTA+D+S++R+E++ NL R+ L A+ ++ Sbjct: 231 VTGLKVLDLCAAPGGKAMQLAALGAQVTAVDISEKRMERIGENLTRVGLKADCVVSDAFT 290 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FDAVL+DAPCS+TGTIRRHPD+ + +D + Q ++ ++ +KPGG Sbjct: 291 FEQDG--FDAVLLDAPCSATGTIRRHPDLPYAKDGSEFGALIDQQEAMIDHALTLLKPGG 348 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +VF CSL + E ++ L P L A + ++ EG +R+ PD Sbjct: 349 RLVFCTCSLLPDEGEVQAEEALARHPG---LTIDADALRINGVNPDWITDEGGLRLRPDY 405 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 I GMDGF+ +R+ Sbjct: 406 WADI----GGMDGFYMAVMRK 422 >gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1039] gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1039] Length = 452 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 191/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILERCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + + P DGFF LR+ Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis 0140J] gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus uberis 0140J] Length = 440 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 118/459 (25%), Positives = 206/459 (44%), Gaps = 38/459 (8%) Query: 1 MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + AR + + + L+ + L+ +D+ L+ IV T+ Sbjct: 1 MANNWKREARGKALMAIEDIFDNGAYSNLALNQHLNH---QALNAKDKALITEIVYGTVS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 ++ L V+ R + LL +S+ Q+LYLD V +A+V+ AV AK N Sbjct: 58 RKLTLEWHLSHVIE-DRNRLDKWVYYLLMISLYQLLYLDKVPQHAIVNDAVNIAKNRGNN 116 Query: 118 RHFAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 R K VN++LR+++ +R + + IP W +L + +G+ER L I + Sbjct: 117 RGAEKFVNAVLRQLTNHPLPDPSLIKRKNKRYSILYSIPTWLVIKLIDQFGEERALKIME 176 Query: 171 AC--ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + S + + + +E L+A M L + + F G +QD Sbjct: 177 SLSLNSKISLRVINLDKMEIIKEALDAEMSLLSPCGLTKENGYMALHDFFQRGDITIQDE 236 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286 S+ + N VLD C+APGGKT+ + + KV ALD+ + +L+ +R N +RL Sbjct: 237 SSQLVAPTLAIQENDIVLDACSAPGGKTSHMASYLKTGKVVALDIHEHKLDLVRENAERL 296 Query: 287 HLY-AEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + +DA FD +LVDAPCS G IRR PD+ + +D D+ + Sbjct: 297 GLSEKIETRLLDARQVHEVFGPDSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDLKQLQA 356 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L ++ GGI+ +S C++ +++ +V+++ L+ P ++ K Sbjct: 357 VQLEILSSVCQTIRKGGIITYSTCTIFDEENVQVIKRFLKEHPNFEQI--------KLKH 408 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G + ITP+ + DGFF +RR+ Sbjct: 409 TQAEIVKDGCLVITPEQFQ--------TDGFFIAQIRRV 439 >gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 436 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 103/459 (22%), Positives = 193/459 (42%), Gaps = 43/459 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R ++ + ++ + +++ ++ L++ D+ L +V TL+ Sbjct: 1 MTIETNVRALAFETIQDIINDKAYSNIIINDVLSNN---ELNRADKGLYTELVYGTLKRK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + L ++QLL +S+ Q +YLD + ++A+++ AVE AK K H Sbjct: 58 YTLDYLLKPFVQTKLKG---WVRQLLWMSIYQYVYLDKIPEHAIINEAVEIAK-YKGGPH 113 Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR + R + +RIA +P+W + +G E+ I+ + Sbjct: 114 NGNVVNGILRNIMRSDLPDFTEITDDKKRIAIEYSLPKWLVDHWTTHFGIEKTETIAQSF 173 Query: 173 ISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + V L + I+ F +G+ + Sbjct: 174 LDKVTTTVRVNLTRISVDDAIRRLTDDYIVEQDREIETCLHISGKPIIESRMFKDGLISI 233 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282 QD S+ +L VLD C+APGGK + V A D+ + +++ + N Sbjct: 234 QDKSSMFIGELMALKEGDQVLDACSAPGGKACHIAEILNGTGHVDATDIHEHKIDLIDFN 293 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + +L L E DA + K ++D +LVDAPCS G +R P++ + + I Sbjct: 294 IRKLRLSNISAFEHDATEKYDK-VYDKILVDAPCSGLGVLRHKPEIKYEQSQHAIESLVE 352 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L VKPGG +++S C++++ ++E VV L+ + + + Sbjct: 353 IQLEILNNVKYNVKPGGTMIYSTCTIEQMENENVVYTFLKENKDF---------EFDQFE 403 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++I P DGFF +RR Sbjct: 404 HPITGEKVKTMQILPQDF--------NSDGFFITRIRRK 434 >gi|331266904|ref|YP_004326534.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis Uo5] gi|326683576|emb|CBZ01194.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis Uo5] Length = 437 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 127/459 (27%), Positives = 204/459 (44%), Gaps = 38/459 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARNLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAPDKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + ++AVV+ AVE AK K + Sbjct: 58 LTLEWYLSHFIE-DRDKLDNWLYILLLLSAYQLRYLDKIPNHAVVNEAVEIAKARK--KG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI + Sbjct: 115 SEKLVNAVLRRILREGWPDIATIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A P L + F EG +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEATDSPLASTGLVKEQGHFAGHDLFFEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + + +VTALD+ +L+ ++ N++RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLRTGQVTALDLYDHKLDLIQENVERLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTKKLDARKVHEFFGRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +G I ITP++ G DGFF R++ + Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKISE 437 >gi|309798767|ref|ZP_07693031.1| ribosomal RNA small subunit methyltransferase B [Streptococcus infantis SK1302] gi|308117584|gb|EFO54996.1| ribosomal RNA small subunit methyltransferase B [Streptococcus infantis SK1302] Length = 437 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 129/457 (28%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARNLALKVLEDVFVNQAYSNIALNKHLKGSQ---LSATDKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +SV Q+ YLD D+AVV+ AVE AK K + Sbjct: 58 LTLEWYLSHFIE-DRDKLDNWLYVLLLMSVYQLQYLDKLPDHAVVNEAVEIAKSRK--KG 114 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGLPDIAVIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + S F+EG+ +QD S+ Sbjct: 175 LKRNKASIRVTDLSRKEEIKALLGASDSHLSPAGLVKEQGHFASHDLFSEGLITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD +L ++ N RL + Sbjct: 235 QLVAPTLELQGDEQVLDACAAPGGKTAHMASYLTTGQVTALDFYDHKLTLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGNDQFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VVQ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + G I ITP++ G DGFF R++ Sbjct: 407 KDIVKNGCILITPELY--------GSDGFFISQFRKI 435 >gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779] gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779] Length = 437 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 128/457 (28%), Positives = 203/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARNLALKVLEDVFVNQAYSNIALNKHLKGSQ---LSATDKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +SV Q+ YLD D+AVV+ +VE AK + Sbjct: 58 LTLEWYLSHFIE-DRDKLDSWLYILLLMSVYQLEYLDKLPDHAVVNESVEIAK--LRKKG 114 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGLPDIASIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174 Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L+A L + F+EG+ +QD S+ Sbjct: 175 LQRNKASIRVTDLSRKEEIKKMLDASDSALSASGLVKEQGHFAGHDLFSEGLITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + VLD CAAPGGKTA + ++ +VTALD+ +L ++ N +RL + Sbjct: 235 QLVTPTLDLQGEEQVLDACAAPGGKTAHMASYLTTGQVTALDLYDHKLTLIQENAERLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ K FD +LVDAPCS G +RR PD+ + +DT D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGKDQFDKILVDAPCSGIGLLRRKPDIKYNKDTADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VVQ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|163849994|ref|YP_001638037.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens PA1] gi|163661599|gb|ABY28966.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1] Length = 425 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 165/422 (39%), Positives = 236/422 (55%), Gaps = 9/422 (2%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + ++L L L + L RAI + R L I A L L LP + Sbjct: 9 RGLALEDALAQAAR---GAGLDAGEAALARAIATASFRRLGFIKAALAARLRDGLPEDRP 65 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140 L LL AQIL L VAD+A VDL+V AK D + +H LVN++LRR++RE+ + Sbjct: 66 HLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHLVPLVNAVLRRIARERDAIRA 125 Query: 141 RIAG--ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198 + + P+W R + YG+E I+ A + +DLTV D + WA +L + L Sbjct: 126 QESDPLAHNTPDWLARRWQAAYGEEAARRIAVAHLEGAAVDLTVPHDPDIWAERLGGIRL 185 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 G +RL E+ +++ LPG+AEG WWVQDA+A++PV+L ++ V+DLCAAPGGKTAQ Sbjct: 186 DLGSVRLAEVRQAVAELPGYAEGAWWVQDAAAALPVRLLAPVSGERVVDLCAAPGGKTAQ 245 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + +GA VTA+D S RLE+L NL+RL L AE + DA FDAVL+DAPCS+ Sbjct: 246 IAAAGAAVTAVDRSAVRLERLGRNLERLGLSAEVV-TADALALPEDAPFDAVLLDAPCSA 304 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 TGTIRRHPDV+WT+ D+++ A QR+LL + +PGG +V+ CSL+ ++ V Sbjct: 305 TGTIRRHPDVVWTKSEADVIRLAGLQRRLLDKAARLTRPGGRLVYCTCSLEPEEGSAQVA 364 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L +P E + + + A + G +R P + G + G+DGF+A L Sbjct: 365 AFLARNP-DFERIAITPD--RLSGHAELIDASGDLRTLPSHVVGGIGRAGGLDGFYASLL 421 Query: 439 RR 440 RR Sbjct: 422 RR 423 >gi|310828894|ref|YP_003961251.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612] gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612] Length = 441 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 109/466 (23%), Positives = 186/466 (39%), Gaps = 57/466 (12%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R + L V R+ G++ ++ + D+ L IV TL+ +D Sbjct: 1 MKIREQAVKTLLRVSREGAYSNLETKKVLGENHYK---EEDRGLYLNIVYGTLQNKLYLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L + L + + ++LR++V QI +LD + YA V+ +VE R K Sbjct: 58 YLLKKHISKDLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEITGRIK--PKARGF 115 Query: 124 VNSILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKERVLAISDAC 172 VN +LR + R K + IP W + +G E+ I Sbjct: 116 VNGVLRNILRSKETDEAFDFSSFSNEKEALSVRYSIPVWIIHKYYETFGAEKAEKIIPLL 175 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSL----------PGFA 219 + D T KL+ + L + L P F Sbjct: 176 NEKPPFTIRANTLKVDRNTLEEKLSDKGIYCEKGALDCDALHLSHLGGFENQVQCDPLFT 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRL 276 G + +QD A +L G VLD+CAAPGGKT ++ + + A D+ RL Sbjct: 236 AGCFMIQDQGAMKAARLLGPEKTDRVLDMCAAPGGKTTHLSQIMENEGTIIARDIFDSRL 295 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + + RL + + + D + P+ FD +L+DAPCS G IRR P++ +T Sbjct: 296 KLIEETAARLGICNIETEKTDGCIFRPEDREAFDRILLDAPCSGLGIIRRKPEIRYTITK 355 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + QR+LL + ++KPGG +V+ C+++ ++E +++V + P + + ++ Sbjct: 356 KARKELVRIQRQLLDHAVQYLKPGGTLVYCTCTVNSDENERQIERVQKDYP-FMRIEAVS 414 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E I +P + G D FF L++ Sbjct: 415 EG-------------ENSIHTSP--------LDDGCDCFFMAKLKK 439 >gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis NCTC 12261] gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis NCTC 12261] Length = 437 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 206/457 (45%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ + S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFINQAYSNIALNKHFKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A P L + F+EG +QD S+ Sbjct: 175 LVRNKASIRVTDLGRKEEIQVLLEASDSPLSVFGLVKEQGHFAGHDLFSEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGGEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQMQKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VVQ L S P ++ + Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEFEQVTLEHEC-------- 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1] Length = 443 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 108/461 (23%), Positives = 183/461 (39%), Gaps = 47/461 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + LL R LD +S LS +D+ A+ + +D + Sbjct: 4 PRYTAVKLLDKTFRSGSYSNIQLDAGLKNS---DLSPQDKRFCTALYYGVIERKITLDHI 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L + + +LR + Q+LY++ V D A V+ +V+ AK+ + + +VN Sbjct: 61 LTGLSSRPLSKLDSIIITILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKT-SASGMVN 119 Query: 126 SILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++LR R+ + R++ IP E + N YG E + + Sbjct: 120 AVLRNFIRKGKKYDMSKNEIERMSVEYSIPAELIESVVNDYGMENAKDLFVDSLGEAPTF 179 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE---------------LPESIVSLPGFAEGVWW 224 + V + A + + G E ++ S F G++ Sbjct: 180 IRVNNIGDDEADEDREFLEKWGDRSFFEKSPLLPHCYKVNDKVGLYNLESNDMFIMGLFH 239 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRC 281 VQD ++ + N VLD+CAAPGGKT + ++ A D+ K R+ + Sbjct: 240 VQDLASQLCCAAVAPTENDIVLDMCAAPGGKTFTMAEMMDGKGQIYAFDLHKHRVGLIEE 299 Query: 282 NLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL L D Y +L D PCS G IR+ P++ + + D + Sbjct: 300 GAARLELSNVKAEARDATKYYDDIPKATKILCDVPCSGYGVIRKKPEIRY-KSISDFERL 358 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q K+ ++++ GG +V+S C++ K ++E+VVQ++L + P +EL L Sbjct: 359 PEIQYKIAENALNYLADGGEMVYSTCTVRKAENEDVVQRLLANHP-ELELAELPQPLG-- 415 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ G I P G DGFF LRR Sbjct: 416 -----SVFSGGMAAIFPHHF--------GSDGFFIAKLRRK 443 >gi|114571463|ref|YP_758143.1| Fmu (Sun) domain-containing protein [Maricaulis maris MCS10] gi|114341925|gb|ABI67205.1| Fmu (Sun) domain protein [Maricaulis maris MCS10] Length = 433 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 155/428 (36%), Positives = 229/428 (53%), Gaps = 14/428 (3%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 VM++R +L L+ F +S RD+ RAI T R L + VL+ +L L Sbjct: 17 AVMKQRRTLEAALEHT---PEFAAMSDRDRAFARAITATTFRRLGQTRTVLNGLLSRPLH 73 Query: 77 RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 Q LL Q+L++D A +AVV VE A + R L+N++LRRV RE Sbjct: 74 ETSEGAQALLITGATQLLWMDGAPHAVVSSTVELADARSDARKLKGLINAVLRRVDREGR 133 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV--KFDIETWAHKLN 194 E L+ +P+W ++ YG + +++A +DLTV E WA L+ Sbjct: 134 ERLKPTLPRDNLPDWLRDSWRAAYGPGTLSRMANAITVAPPLDLTVKDPDTREHWARALD 193 Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A +LP G +R ++ + +LPG+ EG WW QDA+A+IP L SV+DLCAAPGG Sbjct: 194 ATILPNGSLR-RDTVGDVRALPGYREGAWWAQDAAAAIPATLLTLGPGSSVIDLCAAPGG 252 Query: 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDA 314 KT QL +GA VTALD+S++RLE++R NL R L A + DA Y P + DAVL+DA Sbjct: 253 KTMQLAATGADVTALDLSEKRLERVRENLGRTGLSATLV-AGDALTYKPAQPVDAVLLDA 311 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PC++TGT+RRHP+ W + DD + A Q +++ + +KPGG +V CSL ++ E Sbjct: 312 PCTATGTLRRHPEAAWIKRADDTGRMARLQDEMIKAAAAMLKPGGQLVLCTCSLQPEEGE 371 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 + +V ++ P+ ++ A L+P GW+R+TP + + GMDGFF Sbjct: 372 ALAGRVAGRH-RQLKESPIQPDELAGVESA--LTPAGWVRLTPALWAE----QGGMDGFF 424 Query: 435 AVALRRLI 442 + Sbjct: 425 IARFTKRA 432 >gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6] gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium D344SRF] gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1636] gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6] gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium D344SRF] gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1636] Length = 452 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + + P DGFF LR+ Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,141,733] gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,141,733] Length = 452 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 192/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + +++A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEISAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E + + P DGFF LR+ Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15] gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15] Length = 452 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 192/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPCGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEHEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L + P + L +S Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLETHPDFERIDVLTDPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E + + P DGFF LR+ Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii ATCC 33806] gi|305681148|ref|ZP_07403955.1| putative ribosomal RNA small subunit methyltransferase B [Corynebacterium matruchotii ATCC 14266] gi|224945746|gb|EEG26955.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii ATCC 33806] gi|305659353|gb|EFM48853.1| putative ribosomal RNA small subunit methyltransferase B [Corynebacterium matruchotii ATCC 14266] Length = 491 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 107/459 (23%), Positives = 167/459 (36%), Gaps = 40/459 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L V + L + L +RD I TLR +D V Sbjct: 50 ARAVAFDVLYRVNVEGTYANLALPKALTEYR---LKRRDAAFATEITYGTLRVQGILDIV 106 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L ++ +R+ Q+LY V +A VD AV+ N N Sbjct: 107 IAHCSSRPLDSIDPAVLGAIRLGAYQLLYTRVEPHAAVDSAVKIVAAT-GNEQAKGFANG 165 Query: 127 ILRRVSREKIELLQR----------IAGISIIPEWFKERLENF-YGKERVLAISDACISP 175 ILR++SR E IA PEW + E G++ + A A Sbjct: 166 ILRKISRTTPEAWWEKLQPADELAAIAFRHAHPEWVAKSFEQALGGRDELDAALAADSER 225 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + + +G+ VQD + + Sbjct: 226 PIVHLVARPGEITAEELALMTGGDEGTYSPYAVYLPGGDPGRIDAVRDGLAAVQDEGSQL 285 Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + LDLCA PGGK A L +A D + + + + + Sbjct: 286 IARALTEAPLDGPDGGHWLDLCAGPGGKAALLGAIARIESATVDAVEVQPHRAKLVQQTV 345 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + MD + + FD VLVDAPCS G +RR P+ W + DI + A Q + Sbjct: 346 RDLPVTVHTMDGRNPSFEYQFDRVLVDAPCSGLGALRRRPEARWRKQESDIAQLAQLQYE 405 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL I+ +PGGI+V+S CS D +++ VV K L + P+ + + Sbjct: 406 LLASAINLTRPGGIIVYSTCSPDLRETRGVVNKALENHPV------VELDAHPLVPNMEN 459 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 E +++ P D F L++ P+ Sbjct: 460 TGEEKSVQMWPH--------RHHTDAMFFAVLKK--TPE 488 >gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp. 17-4] gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp. 17-4] Length = 458 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 108/460 (23%), Positives = 194/460 (42%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ +L + L++ + LS D L+ +V L+ +D Sbjct: 16 SRYLAMSILERTDKTGSYSNLLINEAIQKNK---LSAADARLLTELVYGVLQRKLTLDFY 72 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + ++ LLR+S+ Q++YLD + +A++ AVE AK+ K + +K +N Sbjct: 73 LSPFLNED-KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEVAKK-KGHVGISKFIN 130 Query: 126 SILRRVSREKIELLQRIAGISI-------IPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R +++IA +P W E+ G E + ++ + P + Sbjct: 131 GVLRNADRNGFPSVEKIADPIERLSIELSMPRWLVEKFTADIGLEETKKLGESLLRPSHS 190 Query: 179 DLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V T L A+ + + S P F G +QD S+ Sbjct: 191 SARVNEKFLTVEEALEAMEEEGFDVRESVISPVGIVSDGGHFASSPLFQSGQLTIQDESS 250 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDR 285 + + VLD CAAPGGKT + G KVTALD+ + ++ + N R Sbjct: 251 QLVAPALQLEPHHQVLDACAAPGGKTTHIASYLSAEEGGKVTALDLHEHKVALITENAKR 310 Query: 286 LHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +H+ + + FD +LVDAPCS G +RR PD+ +T+ D++ Sbjct: 311 MHVEDVVTAMKLDARNVDQEFSDEQFDRILVDAPCSGLGLMRRKPDIKYTKKEKDLLNLQ 370 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG++V+S C++ ++++E V+ L + ++ Sbjct: 371 KIQLGILEKVAPKLKVGGLLVYSTCTIANEENKETVENFLAAH------ADFEKVSVRTE 424 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G++++ P G DGFF LR++ Sbjct: 425 ESLSGCLKDGFLQLYPHDF--------GTDGFFISCLRKI 456 >gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO] gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,230,933] gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,410] gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,408] gi|258614266|ref|ZP_05712036.1| Sun protein [Enterococcus faecium DO] gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68] gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1162] gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1071] gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a04] gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133C] gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0082] gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133A] gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133B] gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a01] gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO] gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,230,933] gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,410] gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,408] gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68] gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1071] gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E1162] gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a01] gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133B] gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133A] gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133C] gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0133a04] gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium TX0082] Length = 452 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILESCAPTLKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + + P DGFF LR+ Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|606223|gb|AAA58086.1| we have one ORF, ECFMT has fmu and fmv [Escherichia coli str. K-12 substr. MG1655] Length = 386 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 109/390 (27%), Positives = 193/390 (49%), Gaps = 25/390 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 SA + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293 Query: 287 HLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Sbjct: 294 GMKAT-VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 Q ++L +K GG +V++ CS+ +++ Sbjct: 353 QSEILDAIWPHLKTGGTLVYATCSVLPEEN 382 >gi|116517030|ref|YP_816997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae D39] gi|148984178|ref|ZP_01817473.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae SP3-BS71] gi|116077606|gb|ABJ55326.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae D39] gi|147923467|gb|EDK74580.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae SP3-BS71] gi|301800539|emb|CBW33179.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae OXC141] Length = 437 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREDWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,502] gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,502] Length = 452 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKMLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILESCAPTLKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + + P DGFF LR+ Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|19746552|ref|NP_607688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS8232] gi|19748764|gb|AAL98187.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS8232] Length = 440 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 205/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q++YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRAVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIIKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581] gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581] Length = 447 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 108/425 (25%), Positives = 176/425 (41%), Gaps = 31/425 (7%) Query: 31 LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV 90 D + RD+ L + + T R LPR++A+ +L + +Q LL V + Sbjct: 36 KSLNDLDEHQVVARDRGLFKELCFGTCRALPRLEALAGKLLEKPFKTRDADIQALLLVGI 95 Query: 91 AQILYLDVADYAVVDLAVEQAK---RDKENRHFAKLVNSILRRVSREKIELLQRIAGISI 147 Q+LYL V +A V A+ + R + + R + E+ + A + Sbjct: 96 YQLLYLRVPAHAAVGETAGAARLLSKAWATRVLNGCLRRLQRESTTLLAEVDRDPAVALL 155 Query: 148 IPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205 P W+ + + + + ++ P+ + + + D E + +L++ Sbjct: 156 HPRWWVKAFRQAWPDDWRAICDANNQPGPMTLRVNRRHGDREMYLERLDSPGARLCPHAP 215 Query: 206 K----ELPESIVSLPGFAEGVWWVQDASASIPV----QLFGTLNNLSVLDLCAAPGGKTA 257 E P I LPGF EG +QD +A + + VLD C APGGK A Sbjct: 216 DGLTLETPCDIAELPGFKEGHVSIQDEAAQLAAVLLGPVIAPRPGARVLDACCAPGGKAA 275 Query: 258 QLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315 L+ + A+D RL ++ L RL L A + D+ FDA+L+DAP Sbjct: 276 HLLELFDIDLQAIDSDDARLARVEDTLARLGLSASLAHGDATERDWWDGTAFDAILLDAP 335 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS +G IRRHPD+ R DI K A Q +LL + PGG ++++ CS+ +++ + Sbjct: 336 CSGSGVIRRHPDIKRLRRPSDIAKLAELQARLLDNLWPLLAPGGTLLYATCSVLPEENAD 395 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 VQ L +P P A+ + ++ P DGFF Sbjct: 396 QVQAFLERTPGVEVTTPNGLAWGRPAGAGR--------QLLPS--------PDSHDGFFY 439 Query: 436 VALRR 440 LR+ Sbjct: 440 ARLRK 444 >gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus MM3] gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus MM3] Length = 402 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 103/416 (24%), Positives = 185/416 (44%), Gaps = 37/416 (8%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107 + IV T++ +D L L + ++ LLR+S+ Q++YLD V + A + A Sbjct: 2 LTEIVYGTIQRRDTLDYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEA 58 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFY 160 VE AKR + ++ A +VN +LR + RE + ++R+A + P W + + Y Sbjct: 59 VEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPIERLAIATSHPMWLVQDWASEY 117 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESI 212 G E + + + P V D T + A ++ ++ Sbjct: 118 GLETAEKMCEVNMLPPVPTARVNVDKITVEEAIELLAGEGIEAKRGDLSEDAIQIERGNV 177 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTAL 269 F +G +QD S+ + + VLD CAAPGGKT + +V +L Sbjct: 178 AHTDAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGQVMSL 237 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 D+ ++ ++ +RL L + +D ++ + FD +LVDAPCS G IRR P Sbjct: 238 DLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKP 297 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 D+ ++ D + + Q +L + +K GG +V+S C+++K ++E+V+++ L+ P Sbjct: 298 DIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIKQFLQEHPE 357 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + ++ EG +RI P DGF+ LR+ + Sbjct: 358 FEWDTTIKDRMPEKLN---PYIDEGQVRILPHYFA--------TDGFYIACLRKKV 402 >gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330] gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12] gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium PC4.1] gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330] gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12] gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium PC4.1] Length = 452 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 114/460 (24%), Positives = 192/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VASLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + +++A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEISAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E + + P DGFF LR+ Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis ATCC 6249] gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis ATCC 6249] Length = 437 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 129/457 (28%), Positives = 204/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARNLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ +LD V D+AVV+ AVE AK K + Sbjct: 58 LTLEWYLSHFIQ-DRDKLDNWLYVLLLMSAYQVRFLDKVPDHAVVNEAVEIAKARK--KG 114 Query: 120 FAKLVNSILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDFETIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A P L + F+EG +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEANDSPLAASGLVKEQGHFAGHDLFSEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKT + ++ KVTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTVHMASYLTSGKVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ K FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFEKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +G I ITP++ G DGFF R++ Sbjct: 407 IDILKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister microaerophilus UPII 345-E] gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister microaerophilus UPII 345-E] Length = 448 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 105/467 (22%), Positives = 190/467 (40%), Gaps = 47/467 (10%) Query: 1 MKSG----MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK+ +N RL++ + + + L + L RD+ L+ +V Sbjct: 1 MKNSNIKQINERLLAYQCIYEIFYRDAYANLSLQKIFKSHK---LLSRDKALITELVYGI 57 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 R + +++ + S+ + S++ LL + + Q++YLD + + A V+ V+ K+ Sbjct: 58 CRKCNYLQYIVEKLSNRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKI- 116 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLA 167 ++ + VN+ILR R+K E+ + I P W ++ YG + Sbjct: 117 THQGNVRFVNAILRNFLRKKAEINDFSKLSKFEKLSLIYNQPIWLIQKWNKDYGINKTKE 176 Query: 168 ISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGF 218 I A P + + + + I L + ++ Sbjct: 177 ILQAFNLPENLFVRCNELKITTNDLIKIFDENKIEYSGVENFPNIFLIKNGVNLFKTDLL 236 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275 +G ++Q S+ IP VLD+CAAPG KT Q+ + + + A D+ + Sbjct: 237 EKGYIFIQSISSIIPAYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHK 296 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 ++ + N++RL + DA P + +D VL+DAPCS G + P++ W R Sbjct: 297 IKLIEENINRLGVKIVTPKLQDATKLLPTLNEQYDKVLLDAPCSGLGVLGHKPELRWRRT 356 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + I Q+ LL +VK GG +V+S C+L+ ++E+VV L L + Sbjct: 357 EETIESLISTQKDLLKCASIYVKKGGTLVYSTCTLNINENEKVVDWFLNQ-KKEFYLDSI 415 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S G + + PD L+ DGFF +R Sbjct: 416 AVNDIIN-------SENGMLTLWPDTLKS--------DGFFIAKFKR 447 >gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM 15053] gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM 15053] Length = 434 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 98/461 (21%), Positives = 185/461 (40%), Gaps = 52/461 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S +N R + L + R+ L ++ L ++ + + ++N TL L Sbjct: 1 MASSVNERELILDTLLQITREGEYCHIALRNVLE--KYQYLDKKQRAFITRVINGTLEHL 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + R K + ++R V Q+ Y+D V D AV + AV+ A++ + Sbjct: 59 IEIDYIINQFSKVKVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAVKLAEK-RGFAS 117 Query: 120 FAKLVNSILRRVSREKIELLQRIAG------ISIIPEWFKERLENFYGKERVLAISDACI 173 VN +LR +SR ++ +P+W E+ YG++ VL +++ + Sbjct: 118 LKAFVNGVLRNISRNMNKIAYPKDYIEHLSVRYSLPKWILEQWLERYGEDNVLVMAEDFL 177 Query: 174 SPLYIDLTVKFD---IETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWW 224 + + D E L + T I + L F G ++ Sbjct: 178 KEKPVTIRFNPDRISREALTEMLKEEGVRTEEIPEFPAALHIYGYNYLGGLESFRRGYYY 237 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRC 281 VQD ++ V +V+D+CAAPGGK + V A D++ ++ + Sbjct: 238 VQDINSMRTVHWAAPRKGDTVIDVCAAPGGKALHMAERLHGTGHVEARDLTGYKVRLIEE 297 Query: 282 NLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N++R L + ++ D D + D V+ D PCS G I + PD+ + + + Sbjct: 298 NIERSGLKNIEAVKWDATVPDRSAAESADIVIADLPCSGLGVIGKKPDLKYKMTEEMQKE 357 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QRK+L ++VKPGG +V+S C++ +++E + + P + Sbjct: 358 LAALQRKILSVVQAYVKPGGKLVYSTCTVSWEENEGNARWFKNTYPGFSLV--------- 408 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ DGF+ ++ Sbjct: 409 -------------------REKQMIPGLDEGDGFYIALFQK 430 >gi|194397538|ref|YP_002038345.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae G54] gi|194357205|gb|ACF55653.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae G54] gi|301794709|emb|CBW37160.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae INV104] Length = 437 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1271] gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1271] Length = 402 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 103/416 (24%), Positives = 186/416 (44%), Gaps = 37/416 (8%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107 + IV T++ +D L L + ++ LLR+S+ Q++YLD V + A + A Sbjct: 2 LTEIVYGTIQRRDTLDYYLQPFLKKKVE---AWVRVLLRLSLYQMIYLDRVPERAAIHEA 58 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFY 160 VE AKR + ++ A +VN +LR + RE + ++R+A + P W + + Y Sbjct: 59 VEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAIATSHPMWLVQDWASEY 117 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGIRLKELPESI 212 G E + + + P V D T + A ++ ++ Sbjct: 118 GLETAEKMCEVNMLPPVPTARVNVDKITVDEAIELLASEGIEAKHGDLSEDAIQIERGNV 177 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTAL 269 F +G +QD S+ + + VLD CAAPGGKT + +V +L Sbjct: 178 AHTDAFKKGFLSIQDESSMLVARALDPNEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSL 237 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 D+ ++ ++ +RL L + +D ++ + FD +LVDAPCS G IRR P Sbjct: 238 DLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKP 297 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 D+ ++ D + + Q +L + +K GG +V+S C+++K ++E+V+++ L+ P Sbjct: 298 DIKLGKNKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIKQFLQEHPE 357 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + ++ EG +RI P DGF+ LR+ + Sbjct: 358 FEWDTTIKNRMPEKLN---PYIDEGQVRILPHYFA--------TDGFYIACLRKKV 402 >gi|148994053|ref|ZP_01823409.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae SP9-BS68] gi|168488547|ref|ZP_02712746.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae SP195] gi|147927520|gb|EDK78548.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae SP9-BS68] gi|183572591|gb|EDT93119.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae SP195] Length = 437 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFANGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|183603236|ref|ZP_02710913.2| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1087-00] gi|307127948|ref|YP_003879979.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 670-6B] gi|183570571|gb|EDT91099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1087-00] gi|306485010|gb|ADM91879.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 670-6B] gi|332199760|gb|EGJ13835.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA41317] Length = 437 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,501] gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium 1,231,501] Length = 452 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 113/460 (24%), Positives = 190/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ LQ IA +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGIADTIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVVALDVHEHKVKLIEDNAAR 306 Query: 286 LHLYA-EDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + + +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSTVYAQKMDAREVSKQFEAEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L P + L + +S Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLERHPDFERIDVLTNPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + + P DGFF LR+ Sbjct: 427 I------EEKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|148989395|ref|ZP_01820763.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae SP6-BS73] gi|147925145|gb|EDK76225.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae SP6-BS73] Length = 437 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|307710617|ref|ZP_07647051.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK564] gi|307618662|gb|EFN97804.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK564] Length = 437 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARSIALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W RL+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIDNIKRKNKRDSIAYSLPVWLVARLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDIDRKEEIQALLEASDSSLSPSGLVKEQGHFAGHDLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHIASYLTIGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFAPLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLGKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|225859487|ref|YP_002740997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 70585] gi|225721429|gb|ACO17283.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae 70585] Length = 437 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGI 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|225857347|ref|YP_002738858.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae P1031] gi|225726221|gb|ACO22073.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae P1031] Length = 437 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +SV Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|332072908|gb|EGI83389.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA17545] Length = 437 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|303254346|ref|ZP_07340454.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455] gi|301802435|emb|CBW35190.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae INV200] gi|302598697|gb|EFL65735.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455] Length = 437 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +SV Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46] Length = 435 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIVDQKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL + + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCIHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +V+S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|322392343|ref|ZP_08065804.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780] gi|321144878|gb|EFX40278.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780] Length = 437 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 202/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V+ + L+ S LS D+ LV +V T+ Sbjct: 1 MNKVETARSLALEVLEDVLVNQAYSNITLNKHLKGSQ---LSVVDKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRH 119 ++ + + + L LL +S+ Q+ YLD D+AVV+ AVE AK K + Sbjct: 58 LTLEWYISHFIE-DRDKLDSWLYVLLLMSLYQLQYLDKLPDHAVVNEAVEIAKSHK--KG 114 Query: 120 FAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGLPDITSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174 Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + F+EG+ +QD S+ Sbjct: 175 LQRNKASIRVTDLSRKEEIKKLLGASDSILSVAGLVKEQGHFAGHDLFSEGLITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L ++ N +RL + Sbjct: 235 QLVAPTLALQGDEQVLDACAAPGGKTAHIASYLTVGQVTALDLYDHKLTLIQENAERLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGEDQFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VVQ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|332358059|gb|EGJ35892.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1056] Length = 438 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 190/451 (42%), Gaps = 34/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L ++ + L LL +S+ Q+LYLD + +A V A+E AK R + + FA + Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANAL 123 Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 + R +R + +P W + L +G+ER LAI + S I Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T L A L + F G +QD S+ + Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L + Sbjct: 244 IEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + +G Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP++ E DGFF R++ + Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438 >gi|168575074|ref|ZP_02721037.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae MLV-016] gi|307068359|ref|YP_003877325.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae AP200] gi|183578893|gb|EDT99421.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae MLV-016] gi|306409896|gb|ADM85323.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae AP200] Length = 437 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 199/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + F G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFTNGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702] gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702] Length = 439 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 98/463 (21%), Positives = 194/463 (41%), Gaps = 47/463 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ AR ++ LL + + +LD + + +RD+ A+ L Sbjct: 1 MKT---ARQITLDLLIRMDTQGAYSNIILDHAFTQNDA---DRRDKAFSAALFYGVLERR 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ + + K ++ ++LR+ Q+L+++ V D A V+ +V + Sbjct: 55 MTLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTK- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 VN+ILR R + ++ + P+W ++ + G++R + + ++C Sbjct: 114 AKGYVNAILRTFLRNEKQIDYGNLTGEAKLSIEYSCPKWLVKKWNSELGEQRAMQMINSC 173 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVW 223 I V + +L + + L + + I + +G++ Sbjct: 174 FGRPPIYARVNTVRYTVDDVIGELESEGISAAKNSLIDACIELANTKGIEQSSAYKKGMF 233 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD S+ I ++ + N +V+DLC+APGGKT + ++ + D+ ++ + Sbjct: 234 HIQDISSQICCKIAAPVFNETVVDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIA 293 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL L E DA + P D V+ D PCS G IRR P++ + + + Sbjct: 294 NTAKRLGLTIITAAENDATKFNPDIPKADRVICDVPCSGLGVIRRKPEIKY-KPMKQLET 352 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-ELVPLNSAYW 398 QRK++ +VKPGG +V+S C++ + +++++V + L+ V +VPLN Sbjct: 353 LPDTQRKIINNAAEYVKPGGTLVYSTCTVSRTENDDIVDEFLKEHSDFVPVVVPLNIKGL 412 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + DGFF LR++ Sbjct: 413 ED-----------------SYKRTMLPCDVNGDGFFTATLRKV 438 >gi|168491383|ref|ZP_02715526.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC0288-04] gi|183574228|gb|EDT94756.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC0288-04] Length = 437 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 199/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDNWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + F G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFTNGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus DSM 15470] gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus DSM 15470] Length = 454 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 96/459 (20%), Positives = 184/459 (40%), Gaps = 44/459 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + K + + L + ++ L+ ++ R + Sbjct: 12 ARTLAFEALYEIFEKNAYANLTIQSILR---WCPLKKEERHLLTELIYGVCRKYNYCLWM 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + + + +++ LL + + QI++LD + + A V+ V+ AK+ + K +N Sbjct: 69 ISLISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKV-THIGNVKFIN 127 Query: 126 SILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +LR + + I PEW E YG + I A + Sbjct: 128 GVLRNFLRRRGSLTLPDRTSNRVFYESLIYNQPEWLIRFFEKEYGMGQSEKILKAFNTIS 187 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQD 227 + V + + +L + G I +I + G+ ++Q Sbjct: 188 DTCIRVNTLKIETDDIKKQLKLRNISVGDISYMPEALAIKAGTDILFSEFLQTGLIYIQT 247 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ IP ++ G VLD+CAAPG KT + + + + A DV +++ ++ N Sbjct: 248 ASSMIPAKVLGPDAGDHVLDMCAAPGSKTTHIAALMGNRGSIDAWDVYPHKVKLIKDNAK 307 Query: 285 RLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL + D+ P + +D VL+DAPCS G + ++ W R D+ Sbjct: 308 RLGISIIHTEVRDSVKPLPFLYETYDKVLLDAPCSGLGVLGHKVELRWRRKESDLSVFPP 367 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q++L+ Q + K GG++V+S C+L+ ++E ++ + L KS+ Sbjct: 368 LQKQLIEQAAKYTKTGGVLVYSTCTLNPDENEHIINEFLSLHSEFAPEEFNFPVLGKSL- 426 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + + PD++ DGFF LR++ Sbjct: 427 -------NGMMTLYPDLVRS--------DGFFVAKLRKV 450 >gi|94988962|ref|YP_597063.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94992855|ref|YP_600954.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542470|gb|ABF32519.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546363|gb|ABF36410.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS2096] Length = 440 Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 203/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q+ YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G R +AI ++ S Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSHRAVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11] Length = 435 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIVDQKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL + + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCIHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIDSLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +V+S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965] gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965] Length = 448 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 104/467 (22%), Positives = 190/467 (40%), Gaps = 47/467 (10%) Query: 1 MKSG----MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK+ +N RL++ + + + L + L RD+ L+ +V Sbjct: 1 MKNSNIKQINERLLAYQCIYEIFYRDAYANLSLQKIFKSHK---LLSRDKALITELVYGI 57 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 R + +++ + S+ + S++ LL + + Q++YLD + + A V+ V+ K+ Sbjct: 58 CRKCNYLQYIVEKLSNRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVNETVKLTKKI- 116 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLA 167 ++ + VN+ILR R+K E+ + I P W ++ YG + Sbjct: 117 THQGNVRFVNAILRNFLRKKAEINDFSKLSKFEKLSLIYNQPIWLIQKWNKDYGINKTKE 176 Query: 168 ISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGF 218 I A P + + + + I L + ++ Sbjct: 177 ILQAFNLPENLFVRCNELKITTNDLIKIFDENKIEYSGVENFPNIFLIKNGVNLFKTDLL 236 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275 +G ++Q S+ IP VLD+CAAPG KT Q+ + + + A D+ + Sbjct: 237 EKGYIFIQSISSIIPAYALDPKPYEKVLDMCAAPGSKTTQIAQLMDNKGSIDAWDLYPHK 296 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 ++ + N++RL + DA P +D VL+DAPCS G + P++ W R Sbjct: 297 IKLIEENINRLGVKIVTPKLQDATKLLPTLTGQYDKVLLDAPCSGLGVLGHKPELRWRRT 356 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + I Q+ LL ++VK GG +V+S C+L+ ++E++V L L + Sbjct: 357 EETIESLISTQKDLLKCASTYVKKGGTLVYSTCTLNINENEKIVDWFLNQ-KKEFYLDSI 415 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S G + + PD L+ DGFF +R Sbjct: 416 AVNDIIN-------SENGMLTLWPDTLKS--------DGFFIAKFKR 447 >gi|332366359|gb|EGJ44110.1| RNA methyltransferase Sun [Streptococcus sanguinis SK355] Length = 438 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 124/458 (27%), Positives = 194/458 (42%), Gaps = 38/458 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + +L V + ++ S LSQ D+ LV +V T+ Sbjct: 3 SKQKKARWQALEILEEVFEEGAYSNIAINRALSQSQ---LSQADKGLVTELVYGTVARKI 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L ++ + L LL +S+ Q+LYLD + +AVV AVE AK K R Sbjct: 60 TLEWYLSHLIE-DRDKLDNWLYILLELSLYQMLYLDKIPQHAVVHEAVEIAKIRK--RGS 116 Query: 121 AKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN++LRR + +R + +P W + L YG+ER LAI + Sbjct: 117 EKFVNALLRRIEREDVADFKTIKRKNKRYSIQYSLPVWLVKALIEEYGEERALAIFASLF 176 Query: 174 SP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 I +T L A P L + F GV +QD S+ Sbjct: 177 VCSKASIRVTDMSRKAELRQLLGAEDSPLSPSALVKRQGHFAGHQLFESGVITIQDESSQ 236 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL- 288 + +LD C+APGGKT + ++ +TALD+ +LE + N RL L Sbjct: 237 LVAPTLSIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAKRLGLA 296 Query: 289 YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q Sbjct: 297 DKVTTKKLDATKVFEIFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQL 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L ++ GGI+ +S C++ +++ EVV+K L S P +++ + Sbjct: 357 DILDSVCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RK 408 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +G I ITP++ E DGFF R++ + Sbjct: 409 DIVKDGCILITPELYES--------DGFFISQFRKISE 438 >gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E980] gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecium E980] Length = 452 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 193/460 (41%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ L V + LL+ S L+Q+D L ++ T+ ++ Sbjct: 12 VRYMALLTLERVNKGGAYSNLLLNEMIKQS---ELNQKDVGLFTELIYGTISHQRLLEFY 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ + + ++ LL +SV Q+ +LD V +A+++ AVE AK K N K VN Sbjct: 69 VAPLIAKA-KKVDDWVKTLLYLSVYQLEFLDKVPAHAILNEAVEIAK-VKGNPGTGKFVN 126 Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ + ++R++ +P W +RL + G E + + P + Sbjct: 127 GVLRNYQRQGAPDLQGITDPIERLSVKISLPLWMTKRLVDQIGYEETEKLGLSLYQPSHA 186 Query: 179 DLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V + ++ A + + S F +GV +QD S+ Sbjct: 187 SARVDTRRLSRDQAITVLQEEEITAEKSQVSPYGIVAKKGHLASSSLFHDGVMTIQDESS 246 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT G +V ALDV + +++ + N R Sbjct: 247 MLVAPSMQIEPEHHVLDACAAPGGKTTHIASFLDPSCGGEVIALDVHEHKVKLIEENATR 306 Query: 286 LHLY-AEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + A +MDA + FD +LVDAPCS G +RR PD+ + + D++ Sbjct: 307 LGVSSAVYAQKMDAREVSKQFEPEQFDRILVDAPCSGLGLLRRKPDIRYKKQPDELANLP 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +K GI+ +S C++ K+++++VV L + P + L +S Sbjct: 367 KIQLEILESCAPALKSSGILTYSTCTILKEENQDVVSAFLETHPDFERIDVLTDPMLQSS 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E + + P DGFF LR+ Sbjct: 427 IV------EKMLTLYPHQFY--------TDGFFICCLRKK 452 >gi|303258671|ref|ZP_07344651.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293] gi|303266637|ref|ZP_07352521.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457] gi|303268527|ref|ZP_07354320.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458] gi|302640172|gb|EFL70627.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293] gi|302641922|gb|EFL72276.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458] gi|302643799|gb|EFL74062.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457] Length = 437 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +SV Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDTKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus ED133] Length = 435 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TSVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +V+S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122] gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122] Length = 435 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAVEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVGASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|94990962|ref|YP_599062.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10270] gi|94544470|gb|ABF34518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10270] Length = 440 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 205/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q++YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTNHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|324991771|gb|EGC23703.1| RNA methyltransferase Sun [Streptococcus sanguinis SK353] Length = 438 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 191/451 (42%), Gaps = 34/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L ++ + L LL +S+ Q+LYLD + +A V A+E AK R + + FA + Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANAL 123 Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 + R +R + +P W + L +G+ER LAI + S I Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T L A L + F G +QD S+ + Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L + Sbjct: 244 IEGEEEILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA +FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 LDATKVFETFGPDVFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + +G Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP++ E DGFF R++ + Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438 >gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265] gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265] Length = 445 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 118/463 (25%), Positives = 204/463 (44%), Gaps = 38/463 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S AR ++ LL + LL +S LS+ D+ ++VN LR+ Sbjct: 1 MTS---ARELAFTLLQALETGNRHSDSLLHDMLQES---SLSRTDRAFATSLVNGVLRYR 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D V+ +L + +++ +LR+ Q+L+LD V +AVV+ +V A+R K R Sbjct: 55 LQLDFVIGHFYSHNLQKASPAIRNILRLGAWQLLFLDRVPAWAVVNESVRLARRFKGER- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 AKLVN++LR++S E I L + A PE + YG +R ++ Sbjct: 114 MAKLVNAVLRKISPETIHLEEWTRAMEPAARLALRYSHPEELVKEWIAAYGTQRAESMLR 173 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-------AEGVW 223 + + ++T + + T RL + F G+ Sbjct: 174 YDNESPWFGFRIN-SLKTDSDRFFTQTGTTEVARLDSGLRKLFLSQDFSPFEVPLQNGLV 232 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLR 280 VQ+ + + L VLD+CAAPGGKTA +L+ + +TALD+ +++ K+R Sbjct: 233 SVQNPTQLLACLLLNPTPGSEVLDMCAAPGGKTAALAELMGNEGHITALDIYEQKTNKIR 292 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + L + + DA + P DA+L+DAPC+ TG + R ++ W D++ + Sbjct: 293 RLAETLGISIITALTDDARSFIPPTPPDAILLDAPCTGTGVLGRRTELRWKLDSEKLDGL 352 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +LL +K GG++V++ CS+D +++ + L+ P E P + Sbjct: 353 LKLQAELLEHAAHILKEGGVLVYATCSVDPRENNLQTEAFLQRHP---EFSPDANPGSLP 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + L P+G + P G DG F + + Q Sbjct: 410 PAFSSVLRPDGSLLTLPG-------EQQGFDGGFCHRMVKNQQ 445 >gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 442 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 116/463 (25%), Positives = 215/463 (46%), Gaps = 47/463 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G N RL++ +L+ + + L ++ L +D+ +R IV+ T+RFL Sbjct: 2 TGWNERLIAIKILNRFEKDKK-LKEHIEKFTSR-----LHPQDRAFIREIVSGTVRFLRL 55 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D ++ +L R+K +++ LRV QI + +V YA ++ VE K+ + A Sbjct: 56 LDFSIEKATGKNLKRQKNTVRNSLRVIAYQIFFTNVPPYAALNETVEAVKKILG-KKAAG 114 Query: 123 LVNSILRRVSREKI--------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN+I +++ + +R++ + W +R NFYGKE + + Sbjct: 115 FVNAISKKIIGFDYKKEIERISDYFERLSILYSFETWMVKRWSNFYGKEEIEKLLKGLNR 174 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWV 225 + + V + + L + I S+PG+ EG +++ Sbjct: 175 VAPLFIRVNTIKISQQELLNLLEKTKIDAEPHPFIPYMIRIKGRVPIESIPGYKEGFFYI 234 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCN 282 QD ++ + L +LD+ AAPGGKT L + A++ A+D++K R++ L+ N Sbjct: 235 QDPASFLSAYLLDPKQGEIILDVGAAPGGKTTALSSLTIDKARIIAVDINKERMKLLKNN 294 Query: 283 LDRLHLYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L RL + +++ D F + FD +L+DAPCS+TG IRRHP+ W + I Sbjct: 295 LKRLGISNVELVLTDIQKDKNFIEKHENSFDKILIDAPCSATGVIRRHPEGKWNKSLKLI 354 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + QR LL +KPGG++++S CSL+K++ E+++ E+ S+ Sbjct: 355 KYNQTIQRNLLSSCYKLLKPGGVLLYSVCSLEKEEGEDIL-------KFAQEIGFKESSL 407 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ + + + ++R+ P + MDGFF + Sbjct: 408 YNLPELLKSFAKKHFLRVFPH--------KNNMDGFFYSKFEK 442 >gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10750] Length = 440 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 110/451 (24%), Positives = 203/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSSKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q++YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRAVAIMESLFMRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 +T +E A L+A L + + F G +QD S+ + Sbjct: 185 STRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7] gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7] Length = 458 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 110/462 (23%), Positives = 194/462 (41%), Gaps = 44/462 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ +L + L++ + LS D L+ +V L+ +D Sbjct: 16 SRYLAMSILERTDKTGSYSNLLINEAIQKNK---LSAADARLLTELVYGVLQRKLTLDFY 72 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + ++ LLR+S+ Q++YLD + +A++ AVE AK+ K + +K +N Sbjct: 73 LSSFLAED-KKIDIWVRNLLRLSIYQMIYLDKIPVHAILFEAVEVAKK-KGHIGISKFIN 130 Query: 126 SILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +LR R+ + ++R++ +P+W E+ G E + ++ + P + Sbjct: 131 GVLRNADRKGFSSIETIKDPMERLSIELSMPKWLVEKFTEDIGLEETKKMGESLLRPSHS 190 Query: 179 DLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V T L A+ + + S P F G +QD S+ Sbjct: 191 SARVNEKFLTVEEALEAMEEEGFDVRKSAISPVGIVSDGGHFASSPLFQSGQLTIQDESS 250 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDR 285 + + VLD CAAPGGKT + G KVTALD+ + ++ + N R Sbjct: 251 QLVAPALQLEPHHQVLDACAAPGGKTTHIASYLSAEEGGKVTALDLHEHKVALITENAKR 310 Query: 286 LHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +H+ + + FD +LVDAPCS G +RR PD+ +T+ D++ Sbjct: 311 MHVEDVVTAMKLDARNVDQEFSDEQFDRILVDAPCSGLGLMRRKPDIKYTKKEKDLLNLQ 370 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L Q +K GG++V+S C++ +++++ V K L K Sbjct: 371 KVQLGILEQVAPKLKVGGLLVYSTCTIANEENKDTVDKFLSLH------TDFEQVSVKVE 424 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D G +++ P G DGFF LR++ + Sbjct: 425 DSLTRCIKNGSLQLYPHDF--------GTDGFFISCLRKVQK 458 >gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus warneri L37603] gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus warneri L37603] Length = 435 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 103/460 (22%), Positives = 193/460 (41%), Gaps = 46/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + R ++ + ++ + ++ L D+ L +V T++ Sbjct: 1 MTNSI--RGLAFETIQAILDEGAYSNLEINEVLSTYEISDL---DKGLFTELVYGTVKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + +++LL +S+ Q +YLD V ++A+++ AVE AK + + Sbjct: 56 YTLDFYLKPFLKTKIKG---WVRELLWMSIYQYVYLDKVPNHAIINEAVEIAKEE-GGYY 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR + R + + +RIA +P+W + YG E+ AI+ + Sbjct: 112 TGNVVNGILRTIMRSELPDVKDIQDDKKRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSF 171 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + + L L + IV+ F +G+ Sbjct: 172 LEPVATTVRANITRGSIDNIISALEKENYTVERDDVLPFCLHISGKPIVNSRAFKDGLVS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + G + SVLD C+APGGK + V A D+ +++ + Sbjct: 232 IQDKSSMFVAHIMGLNRDDSVLDACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDF 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA +D +LVDAPCS G +R P++ +T+ + I Sbjct: 292 NIRKLRLKNIKAYQHDATK-PYNNQYDKILVDAPCSGFGVLRHKPEIKYTQSKNSIQSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L VKPGG +++S C++++ ++E VV L+ + E P + Sbjct: 351 ELQLQILENVKHNVKPGGSIIYSTCTIEQMENENVVYTFLKQNK-DFEFEPFQHPMTGEM 409 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ P DGFF ++R Sbjct: 410 V--------KILQVFPQDY--------HSDGFFIARIKRK 433 >gi|325688781|gb|EGD30790.1| RNA methyltransferase Sun [Streptococcus sanguinis SK115] Length = 438 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 194/458 (42%), Gaps = 38/458 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + +L V + L+ S LSQ D+ LV +V T+ Sbjct: 3 SKHKTARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKI 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L ++ + L LL +S+ Q+LYLD + +A V AVE AK K R Sbjct: 60 TLEWYLSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGS 116 Query: 121 AKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC- 172 K +N++LRR + +R + +P W + L YG+ER LAI + Sbjct: 117 EKFINALLRRIEREGVADFKTIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLF 176 Query: 173 -ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 S I +T + L A L + F G +QD S+ Sbjct: 177 VRSKASIRVTDMSRKAEFRQLLGAENSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQ 236 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL- 288 + +LD C+APGGKT + ++ +TALD+ +LE + N +R+ L Sbjct: 237 LVAPTLDIEGEEEILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAERVGLA 296 Query: 289 YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q Sbjct: 297 DKITTKKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQL 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L ++ GGI+ +S C++ +++ EVV+K L S P +++ + Sbjct: 357 DILDSVCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RK 408 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +G I ITP++ E DGFF R++ + Sbjct: 409 DIVKDGCILITPELYES--------DGFFISQFRKISE 438 >gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus 214-1] gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1] gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus 214-1] gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1] Length = 441 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 128/460 (27%), Positives = 209/460 (45%), Gaps = 43/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +AR VS L V+ + L+ S LS DQ L IV T+++ Sbjct: 1 MSIDKSARAVSLETLIKVLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L K ++ LL +S+ Q+++LD V D AV+D A + AK+ K + Sbjct: 58 LFLEYQLKGLVRTKLTEK--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHS 115 Query: 119 HFAKLVNSILRRVSRE------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR +R + ++ ++ +PEW + L + +G ++ ++ ++ Sbjct: 116 AGFRLVNGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSI 175 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWV 225 P + ++ D E +L + I F EG + Sbjct: 176 NEPAKNSVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTI 235 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNL 283 QD +AS+ V+ F + VLD C+APGGKT Q + VTALD+ ++L +R N Sbjct: 236 QDEAASLVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNA 295 Query: 284 DRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 R+H+ DA F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 296 QRMHVANKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQN 355 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L S +K G +V+S CS+ +++EEVV+K L++ P ELVP + Sbjct: 356 LQKIQLAILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S G ++I PD+ G DGFF + Sbjct: 415 --------SKTGMLKIMPDL--------DGNDGFFIAKFK 438 >gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ST398] Length = 435 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFKHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +V+S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKTGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 21193] Length = 435 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 186/455 (40%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N LR + R + R+A +P+W + YG E I + + Sbjct: 117 NGFLRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 435 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKXHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|322377784|ref|ZP_08052273.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. M334] gi|321281207|gb|EFX58218.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. M334] Length = 437 Score = 239 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 128/457 (28%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ L V + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARSLALAGLEDVFINQAYSNIALNKHLKGSQ---LSAADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114 Query: 120 FAKLVNSILRRVSREKI-------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWLDIASIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEASASSLSPSGLVKEQGHFAGHDLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLNLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D +Y K FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEYFSKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLGKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIVKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL] gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9] gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1] gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus str. Newman] gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus A9781] gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763] gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9719] gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A9299] gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A8115] gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300] gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224] gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5948] gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5937] gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98] gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8117] gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9765] gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A10102] gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132] gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9754] gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1] gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8796] gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL] gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9] gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1] gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus A9781] gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763] gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9719] gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A9299] gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus aureus A8115] gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300] gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224] gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5948] gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A5937] gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98] gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A10102] gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9765] gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8117] gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9754] gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8796] gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MRSA131] gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MRSA177] gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131] gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 21172] Length = 435 Score = 239 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|328945030|gb|EGG39186.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1087] Length = 438 Score = 239 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 118/451 (26%), Positives = 190/451 (42%), Gaps = 34/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L ++ + L LL +S+ Q+LYLD + +A V AVE AK R + + FA + Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAVEIAKIRKRGSEKFANAL 123 Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 + R +R + +P W + L +G+ER LAI + S I Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T L A L + F G +QD S+ + Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L + Sbjct: 244 IEGEEEILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + +G Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP++ E DGFF R++ + Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438 >gi|325686917|gb|EGD28941.1| RNA methyltransferase Sun [Streptococcus sanguinis SK72] gi|327467211|gb|EGF12715.1| RNA methyltransferase Sun [Streptococcus sanguinis SK330] Length = 438 Score = 239 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 190/451 (42%), Gaps = 34/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L ++ + L LL +S+ Q+LYLD + +A V A+E AK R + + FA + Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANAL 123 Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 + R +R + +P W + L +G+ER LAI + S I Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASI 183 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T L A L + F G +QD S+ + Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLD 243 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L + Sbjct: 244 IEGEEEILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + +G Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP++ E DGFF R++ + Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438 >gi|168483273|ref|ZP_02708225.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1873-00] gi|172043312|gb|EDT51358.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC1873-00] Length = 437 Score = 239 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YL+ + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFANGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|126730443|ref|ZP_01746254.1| ribosomal RNA small subunit methyltransferase B, putative [Sagittula stellata E-37] gi|126709176|gb|EBA08231.1| ribosomal RNA small subunit methyltransferase B, putative [Sagittula stellata E-37] Length = 413 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 144/437 (32%), Positives = 224/437 (51%), Gaps = 28/437 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M ARL + LL V+ + L+ L+ D+ + + LR L Sbjct: 1 MADPSPARLAAVDLLDMVLVQHRPLSET-------DRLDRLAAPDRAAAQRLATEVLRGL 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D VL L + + + +LR+ ++ A + VV VE A R K + Sbjct: 54 ERADRVLKPHLRKAPAGR---VMNILRLGATELC-TGGAAHGVVSDCVEIAARGKRTQGA 109 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 L N++LR+V+ ++ + +P+W + L +G + V A+ A +DL Sbjct: 110 KGLANAVLRKVAESGPADWAKL-RVPRLPKWLRAPLAEAWGPQAVAAMERAHFDGAPVDL 168 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T+K D L +LPTG +RL++ + +LPGF++G WWVQDA+A++PV+L G + Sbjct: 169 TLKGD---LPEGLPGELLPTGSVRLRDA-GQVSALPGFSDGAWWVQDAAAALPVKLLGEV 224 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 L VLD+CAAPGGKT QL GA+VTALD+S+ RL ++R NLDR L AE + Sbjct: 225 AGLDVLDMCAAPGGKTLQLAARGARVTALDISEARLARVRENLDRCGLEAELVA---GDA 281 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + +DA+L+DAPCS+TGTIRRHPD+ + I + Q +L +S +KPGG Sbjct: 282 LEHRGQYDAILLDAPCSATGTIRRHPDLPHVHMGEKISELIGLQGWMLDHALSLLKPGGR 341 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL + E +++ L P + +VP + + + S EG +R+ PD Sbjct: 342 LVYATCSLLPDEGECQIEEALERHPG-LRVVPAEADWIE----PAWRSEEGGLRLRPDFW 396 Query: 421 EKIDGVSSGMDGFFAVA 437 + G+DGF+ Sbjct: 397 AE----RGGLDGFYMAC 409 >gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus USA300_FPR3757] Length = 435 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQYDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 21189] Length = 435 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETEKILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|332188795|ref|ZP_08390506.1| nusB family protein [Sphingomonas sp. S17] gi|332011194|gb|EGI53288.1| nusB family protein [Sphingomonas sp. S17] Length = 447 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 148/440 (33%), Positives = 216/440 (49%), Gaps = 31/440 (7%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G R + LL V+R+ L L + D+ L AI TLR LP + Sbjct: 36 GTATRRAAIRLLDAVLRRGEPLEAALASATRALS----GGPDRGLAHAIAAETLRRLPDL 91 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 DA++D LP + LR+++ Q+L L +A + + Sbjct: 92 DALIDSATKQRLPD-DAKARFALRIALVQVLALGTPPHAAIATVLPLVD---------GG 141 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 ++ V + + I +PE + R E +G+E V A + A +P +DLT+ Sbjct: 142 PRKLVHGVFSTITKSGVLLPEIPALPEATEARWEENWGEEMVEAAAHAIAAPPPLDLTLA 201 Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 T WA KL + L G +RL S++ L GF EG WWVQD +ASIP +L G Sbjct: 202 DPAATGEWAEKLGGISLLPGHVRLPSGN-SVMELQGFDEGAWWVQDLAASIPARLLG-EG 259 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDLCAAPGGKT QL +G VTA+D S+ RL +L NL+R + AE + D ++ Sbjct: 260 RGHVLDLCAAPGGKTLQLAAAGWTVTAIDQSESRLARLAENLERTNQSAEVV-TADLREW 318 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 PK+ DA+LVDAPCS++G RRHPDVL+ I + A QR +L + +++KPGG + Sbjct: 319 EPKEAADAILVDAPCSASGIFRRHPDVLYRVRPAIIAEMAELQRVILTRAANWLKPGGKM 378 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CSL+ ++ E ++ L P LVP+ + L+ EG IR P Sbjct: 379 VYATCSLEPEEGERQIESFLAERPDYA-LVPITGDWP-------GLTAEGTIRTLP---- 426 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + +DGFF L+R Sbjct: 427 TLLAKEGRLDGFFIAMLQRK 446 >gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus JKD6159] Length = 435 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9635] gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A9635] Length = 435 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 101/455 (22%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNKIADPKKRMAIEYSMPKWIIDHWATHYGLEGTETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +V+S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIVYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|50914729|ref|YP_060701.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10394] gi|139473325|ref|YP_001128040.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes str. Manfredo] gi|50903803|gb|AAT87518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS10394] gi|134271571|emb|CAM29796.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 440 Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 204/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q+ YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTNHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143] gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143] Length = 437 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 131/457 (28%), Positives = 201/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR +S +L V + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARNLSLAVLEDVFIHQAYSNIALNKHLKGSR---LSVADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD V ++AVV+ AVE AK K + Sbjct: 58 LTLEWYLSHFIE-DRDKLDNWLYILLLLSAYQLRYLDKVPNHAVVNEAVELAKARK--KG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI D+ Sbjct: 115 SEKLVNAVLRRILREGWPDIDSIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFDSL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FAEG +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEASDSLLAVSGLVKEQGHFAGHDLFAEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHIASYLTSGMVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ K FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFEKDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQQIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFHVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 438 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ NAR V+ L V+ + L+ + L + L +V T+++ Sbjct: 1 MKT--NARTVALDTLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + L ++ LL +S QI +LD V + AV+D A + AK + Sbjct: 56 LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKAYGRPKS 113 Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173 +LVN IL + R L ++ A +P W + +GK R I + Sbjct: 114 SGYRLVNGILHSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226 S I ++ D + L+ L ++ F +G VQ Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ + F N LD C+APGGKT Q + +VTALD+ +++L ++ N Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + +DA Y + FD +L+DAPCS G +RR P++ +T+ +DI Sbjct: 294 RMRVADRVKVKTLDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +K GG +V+S CS+ +++EE V+K L + P K Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + A +P+G ++I PD DGFF Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434 >gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus MRSA252] gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus EMRSA16] gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus MRSA252] gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus EMRSA16] Length = 435 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANMTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus MW2] gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TCH70] gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2] gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus MSSA476] gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TCH70] Length = 435 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 188/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKFTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E+ I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|21910907|ref|NP_665175.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS315] gi|28895403|ref|NP_801753.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SSI-1] gi|71911150|ref|YP_282700.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS5005] gi|209559767|ref|YP_002286239.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131] gi|306826944|ref|ZP_07460244.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pyogenes ATCC 10782] gi|21905113|gb|AAM79978.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS315] gi|28810649|dbj|BAC63586.1| putative RNA-binding Sun protein [Streptococcus pyogenes SSI-1] gi|71853932|gb|AAZ51955.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS5005] gi|209540968|gb|ACI61544.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131] gi|304430962|gb|EFM33971.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pyogenes ATCC 10782] Length = 440 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 204/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q+ YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|15901566|ref|NP_346170.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4] gi|237649147|ref|ZP_04523399.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974] gi|237820737|ref|ZP_04596582.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974M2] gi|14973229|gb|AAK75810.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4] gi|332074074|gb|EGI84552.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA41301] gi|332201157|gb|EGJ15228.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA47901] Length = 437 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S L D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|254450298|ref|ZP_05063735.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238] gi|198264704|gb|EDY88974.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238] Length = 410 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 149/427 (34%), Positives = 219/427 (51%), Gaps = 19/427 (4%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V + LL G+ A + LS D+ + + TLR L R D +L L Sbjct: 1 MLDQVTGEGK----LLPELIGEGALQHLSPEDRARAQRLTTETLRGLARADRMLARFLAK 56 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + P S++ +LR+ ++ + A + VV+ VE R + LVN++LR+V+ Sbjct: 57 TPP---LSVRNVLRLCTVELAGGE-AAHGVVNAGVEMVARSQRTSSMKGLVNAVLRKVAA 112 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 E E ++ +P W + L++ YG + V AI A + +D+T K D L Sbjct: 113 EGPEGWAQL-VTPRLPGWLRSPLKDAYGPDVVAAIEVAQFAGAPLDITAKGDPNAANETL 171 Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 +LPTG IRL++ + +LPGF G WWVQDA+A+IPVQ+ + +LDLCAAPG Sbjct: 172 KGEILPTGTIRLRDA-GQVSTLPGFETGDWWVQDAAAAIPVQILAPQSGEKILDLCAAPG 230 Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 GKT QL SGA VTA+D S+ R+ ++ NL R L A I DAF + FDAVL+D Sbjct: 231 GKTMQLAASGADVTAVDSSEGRMIRVGENLKRTGLSATTI-TADAFAFTDGG-FDAVLLD 288 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+TGTIRRHPD+ + +D + Q +++ +S +KPGG +VF CSL + Sbjct: 289 APCSATGTIRRHPDLPYAKDGSEFGILIHQQERMIDHALSLLKPGGRLVFCTCSLLPDEG 348 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E V++ L D + +G +R+ PD GMDGF Sbjct: 349 EVQVEEALARHAGLTVDASAIDRAGIDPDWR---TEDGGLRLRPDYWAD----KGGMDGF 401 Query: 434 FAVALRR 440 + LR+ Sbjct: 402 YIAQLRK 408 >gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 55/2053] gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 65-1322] gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410] gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M876] gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C160] gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus Btn1260] gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WW2703/97] gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899] gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C427] gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C101] gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus A017934/97] gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 58-424] gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M809] gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015] gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MN8] gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 55/2053] gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 65-1322] gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410] gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M876] gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C101] gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C427] gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899] gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus Btn1260] gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus C160] gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus A017934/97] gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015] gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus 58-424] gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus M809] gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus MN8] gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp. aureus CGS00] Length = 435 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|183603536|ref|ZP_02717787.2| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC3059-06] gi|183576422|gb|EDT96950.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae CDC3059-06] Length = 437 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S L D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|225861556|ref|YP_002743065.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Taiwan19F-14] gi|298230282|ref|ZP_06963963.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254901|ref|ZP_06978487.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503480|ref|YP_003725420.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae TCH8431/19A] gi|225726400|gb|ACO22251.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Taiwan19F-14] gi|298239075|gb|ADI70206.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae TCH8431/19A] gi|327389919|gb|EGE88264.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA04375] gi|332200294|gb|EGJ14367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae GA47368] Length = 437 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S L D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNALLRRILREGWPDISSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners SPIN 1401G] gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners SPIN 1401G] Length = 437 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 122/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + +Q ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDDVQYMSIKYSYPQWLVKYCLDNFGKAKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLTTEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ +++L ++ L Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RLH + I++ +Y + FD +LVDAPCS G IRR P+V + + +D+ Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +L + G +V+S C++ +++E+VV++ L + P L P Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS I+I PD DGFF + Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435 >gi|169832803|ref|YP_001695109.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Hungary19A-6] gi|168995305|gb|ACA35917.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae Hungary19A-6] Length = 437 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S L D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNALLRRILREGWPDISSIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus GG] gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein) [Lactobacillus rhamnosus GG] gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG] Length = 446 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 195/465 (41%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ L+ VM K LD L RD L+ +V ++ Sbjct: 1 MTPN-NPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQ---LDSRDAGLLTNVVYGVIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++ LL+ +V Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDYLLAPFVKN--RQLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR+ R IA S P W ++L+ G+ + I A Sbjct: 114 VAKFVTGVLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + + V T A L A+ + L + FA+G++ Sbjct: 174 NQPAHASIRVNTTKTTAAALLKALQPQFPALKESPLTPVGLVAPGGHLAGTREFADGLYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N RL L MDA + FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+ Q +L +K GG + +S C++ K+++++VV L + P E VP+ + Sbjct: 354 DLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHP-EFEQVPVLT 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ PD + DGFF +L R Sbjct: 413 LKPLAKTHGAPA-----LQLFPDDYD--------TDGFFIASLIR 444 >gi|323350301|ref|ZP_08085966.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66] gi|322123486|gb|EFX95157.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66] Length = 438 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 122/453 (26%), Positives = 191/453 (42%), Gaps = 38/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEEGAYSNIALNRALSQSK---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + L LL +S+ Q+LYLD + +A V AVE AK K R K +N Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGSEKFIN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L YG+ER LAI + S Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T L A L + F G +QD S+ + Sbjct: 182 SIRVTDMSRKVELRQLLGAEDSLLSPSALVKKQGHFAGHQLFESGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGKT + ++ +TALD+ +LE + N RL L Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAARLGLADKITT 301 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + + Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I ITP++ E DGFF R++ + Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438 >gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein) [Lactobacillus rhamnosus Lc 705] gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein) [Lactobacillus rhamnosus Lc 705] Length = 446 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 195/465 (41%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ L+ VM K LD L RD L+ IV ++ Sbjct: 1 MTPN-NPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQ---LDSRDAGLLTNIVYGVIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++ LL+ SV Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDYLLAPFVKT--RQLDTWVRCLLQTSVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR+ R IA S P W ++L+ G+ + I A Sbjct: 114 VAKFVTGVLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + + V T A L A+ + L + FA+G++ Sbjct: 174 NQPAHASIRVNTTKTTAAALLKALQPQFPALKESPLTPVGLVAPGGHLAGTREFADGLYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N RL L MDA + FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+ Q +L +K GG + +S C++ K+++++VV L + P E VP+ + Sbjct: 354 DLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHP-EFEQVPVLT 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ PD + DGFF +L R Sbjct: 413 LKPLAKTHGAPA-----LQLFPDDYD--------TDGFFIASLIR 444 >gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] Length = 435 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 188/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E+ I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEKTETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus plutonius ATCC 35311] gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus plutonius ATCC 35311] Length = 453 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 106/471 (22%), Positives = 198/471 (42%), Gaps = 49/471 (10%) Query: 1 MKSGMN-----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK+ R + + + + LL+ S L ++D L IV Sbjct: 1 MKNTNKNIKSSVRDAALQAIERIDKGGAYSNLLLNEMIQSSQ---LGEKDSRLFTEIVYG 57 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 T+ ++ LD + + ++ ++ LL +S Q+LYLD V D+AV++ AVE AKR Sbjct: 58 TISRKLLLEYYLDTFIHKR-KKVEHWVRMLLILSFYQLLYLDKVPDHAVINEAVEIAKR- 115 Query: 115 KENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 + N K VN ILR + R + ++R++ +P W ++L G+ Sbjct: 116 RGNLGTGKFVNGILRSLQRRGLPSLDEISDPIERLSIEISMPLWLVKKLIQQLGETETKK 175 Query: 168 ISDACISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++ + + + A P + + + F Sbjct: 176 LGLSLFEKSHVSGRIDSRKISRFDAIIQLQKEGIEASESPISPYGIIAEKGRLATSSLFR 235 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKR 274 EG +QD S+ + + VLD CAAPGGKT K+ ALD+ Sbjct: 236 EGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGKIIALDIHDH 295 Query: 275 RLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 +L+ ++ N R+ + + + + P + FD +LVDAPCS G +RR PD+ + Sbjct: 296 KLKLIKENAVRMQVSSIIKLEKLDARKVKEVYPSEYFDRILVDAPCSGLGLMRRKPDIKY 355 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + DI K A Q +++ + +K GGI+ +S C++ +++++ V+ L+ P ++ Sbjct: 356 RKTLQDIKKLAKIQEEIIESVVPTLKKGGILTYSTCTITQEENQHVIITFLKKHPEFKKI 415 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A + + + P + DGFF ++++ Sbjct: 416 DII------GNEKVSAEVRDQMLTLYPHRWQ--------TDGFFICCMQKV 452 >gi|149020816|ref|ZP_01835345.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae SP23-BS72] gi|221232467|ref|YP_002511620.1| ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|225855165|ref|YP_002736677.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae JJA] gi|147930457|gb|EDK81440.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae SP23-BS72] gi|220674928|emb|CAR69504.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|225722386|gb|ACO18239.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pneumoniae JJA] Length = 437 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 200/457 (43%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S L D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNALLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 EDRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2062A-h1] gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2052A-d] gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2052A-d] gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2062A-h1] Length = 437 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ +++L ++ L Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RLH + I++ +Y + FD +LVDAPCS G IRR P+V + + +D+ Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +L + G +V+S C++ +++E+VV++ L + P L P Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS I+I PD DGFF + Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435 >gi|15903621|ref|NP_359171.1| rRNA methylase [Streptococcus pneumoniae R6] gi|15459245|gb|AAL00382.1| rRNA methylase [Streptococcus pneumoniae R6] Length = 438 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 124/451 (27%), Positives = 200/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S LS D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREDWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|310816801|ref|YP_003964765.1| ribosomal RNA small subunit methyltransferase B, putative [Ketogulonicigenium vulgare Y25] gi|308755536|gb|ADO43465.1| ribosomal RNA small subunit methyltransferase B, putative [Ketogulonicigenium vulgare Y25] Length = 417 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 144/438 (32%), Positives = 219/438 (50%), Gaps = 24/438 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +LL+ V L+ + F LS D+ + + LR Sbjct: 1 MSDSLIPRRAALNLLNAVTVDHRLLSECTAI------FDPLSPPDRARAQRLATSVLRAA 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D L L P + +Q LR+ V +I + VV+ V K +F Sbjct: 55 SRADRWLKPHLKKRPPVQ---VQNALRLGVVEIAEGAAP-HGVVNDIVTLLADGKRTANF 110 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 A L N++LR+ + + + + +P+W +E L +G + AI A +DL Sbjct: 111 AALANAVLRKGADLPQQWGKLA--LPQLPDWLREPLREAWGNSAINAIERAHFRGAPLDL 168 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T+ D WA +L ++LPTG +RL + +LPGFAEG WWVQDA+A++PV+L G L Sbjct: 169 TIPRDTADWAARLGGLVLPTGSVRLD-GHGMVSTLPGFAEGAWWVQDAAAALPVRLLGDL 227 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 LD+CAAPGGKT QL +GA+VTALD+S RL+++ NL R +L A + Sbjct: 228 RGQRALDICAAPGGKTMQLASAGAEVTALDLSANRLQRVAENLARTNLNATIVQ--GDAL 285 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +D +++DAPCS+TGTIRRHPD+ + RD +I Q +++ + + PGG Sbjct: 286 EFTTTGWDVIVLDAPCSATGTIRRHPDLPFARDGAEIGSLIALQAQMIDHALRLLNPGGR 345 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 ++F CSL + E V++ L P + ++P + A +SPEG +R+ PD Sbjct: 346 LLFCTCSLLPDEGEVQVEEALARHPG-LRVIPPELPEIE----ADWISPEGGVRLRPDYW 400 Query: 421 EKIDGVSSGMDGFFAVAL 438 GMDGF+ L Sbjct: 401 ----PSLGGMDGFYMAVL 414 >gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3] gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3] Length = 436 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 191/453 (42%), Gaps = 33/453 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ +L V + L+ S LS +D+ L +V T+ Sbjct: 3 NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120 ++ L + + + LL +S+ Q++YLD +AVV+ AV AKR F Sbjct: 60 TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 118 Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174 + L + + +R++ +P W + L YG ER I + + Sbjct: 119 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 178 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + +T +E A +L A + L + F +G+ +QD ++ + Sbjct: 179 KASVRVTDGQQVEQLAEELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVA 238 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G + +LD CAAPGGKT + ++ KV ALD+ +L + N RL L + Sbjct: 239 PTLGIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLEDKI 298 Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +LVDAPCS G IRR PD+ + + + D Q ++L Sbjct: 299 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 358 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GGI+ +S C++ ++++EV+Q+ L++ P ++ + + Sbjct: 359 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 410 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G + ITP+ + DGFF LRR Sbjct: 411 VDGCLLITPEQYK--------TDGFFIGQLRRK 435 >gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TW20] Length = 435 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDAPDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|260914692|ref|ZP_05921158.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325] gi|260631291|gb|EEX49476.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325] Length = 443 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 208/458 (45%), Gaps = 43/458 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + ++ R +++ ++ V+ + SL+ L+ + +D L++ I R LP Sbjct: 10 NTALSTRAIAAQVILQVLDQGKSLSALIPEV-----QNQVKSQDLSLLQEICFGICRVLP 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R++ ++ ++ L K + LL V + Q+LY + +A VD V A ++ F Sbjct: 65 RLEHIIKQLVDKPLKGKTRIVHCLLLVGLYQLLYTRIPAHAAVDEVVN-ATTSLKSDSFR 123 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L+N +LRR RE+ + ++ P+WF RL+ Y R + ++ P+++ Sbjct: 124 GLINGVLRRFLREQDTILANVDKHWQTLHPDWFVNRLKKVYPNWREIIEANNQKPPMWLR 183 Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233 + + +ET+ L A + + + LP F +G VQD +A Sbjct: 184 VNQQKNSLETYRSLLQAQGVESEVADSSCALRLLQPLGVAQLPYFDQGAVTVQDLNAQWS 243 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L N +LD CAAPGGKT A+V ALDV RL+++ NL R+ A Sbjct: 244 ALLLEPQNGELILDACAAPGGKTTHILENAPQAQVVALDVEPNRLKRVYENLTRMQQKA- 302 Query: 292 DIIEMDAFDYCPK--------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +I DA FD +L+DAPCS+TG IRRHPD+ W R DI + Sbjct: 303 QVICGDATQPEQWLSQISDSAVQFDRILLDAPCSATGVIRRHPDIKWLRQDADIPQLVQL 362 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + +KP G ++++ CS+ +++ +++ L+++ +L PL S Sbjct: 363 QSQILQALWALLKPSGTLLYATCSVLPEENALQIEQFLQNN-TDAKLEPLPFDLPDSAI- 420 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P +G DGF+ L++L Sbjct: 421 --------GVQFLP--------KENGGDGFYYAKLKKL 442 >gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14] Length = 436 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 190/453 (41%), Gaps = 33/453 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ +L V + L+ S LS +D+ L +V T+ Sbjct: 3 NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120 ++ L + + + LL +S+ Q++YLD +AVV+ AV AKR F Sbjct: 60 TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 118 Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174 + L + + +R++ +P W + L YG ER I + + Sbjct: 119 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 178 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + +T +E A +L A + L + F EG+ +QD ++ + Sbjct: 179 KASVRVTDGQQVERLAEELGAQHSQLSPVGLVKPHGHFAGTDYFKEGLITIQDETSQLVA 238 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + +LD CAAPGGKT + ++ KV ALD+ +L + N RL L + Sbjct: 239 PTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLADKI 298 Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +LVDAPCS G IRR PD+ + + + D Q ++L Sbjct: 299 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 358 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GGI+ +S C++ ++++EV+Q+ L++ P ++ + + Sbjct: 359 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 410 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G + ITP+ + DGFF LRR Sbjct: 411 VDGCLLITPEQYK--------TDGFFIGQLRRK 435 >gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33] gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33] gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis SC84] gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis P1/7] gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis BM407] gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33] gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33] gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus suis SC84] gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus suis BM407] gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus suis P1/7] gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1] Length = 437 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 190/453 (41%), Gaps = 33/453 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ +L V + L+ S LS +D+ L +V T+ Sbjct: 4 NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120 ++ L + + + LL +S+ Q++YLD +AVV+ AV AKR F Sbjct: 61 TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 119 Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174 + L + + +R++ +P W + L YG ER I + + Sbjct: 120 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 179 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + +T +E A +L A + L + F EG+ +QD ++ + Sbjct: 180 KASVRVTDGQQVERLAEELGAQHSQLSPVGLVKPHGHFAGTDYFKEGLITIQDETSQLVA 239 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + +LD CAAPGGKT + ++ KV ALD+ +L + N RL L + Sbjct: 240 PTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLADKI 299 Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +LVDAPCS G IRR PD+ + + + D Q ++L Sbjct: 300 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 359 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GGI+ +S C++ ++++EV+Q+ L++ P ++ + + Sbjct: 360 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G + ITP+ + DGFF LRR Sbjct: 412 VDGCLLITPEQYK--------TDGFFIGQLRRK 436 >gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WBG10049] gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus WBG10049] gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus TCH60] Length = 435 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNVM---DKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLRPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|327462453|gb|EGF08778.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1057] Length = 438 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 123/453 (27%), Positives = 192/453 (42%), Gaps = 38/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V +R L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEERAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + L LL +S+ Q+LYLD + +AVV AVE AK K K VN Sbjct: 65 LSHLIE-DRDKLDSWLYILLMISLYQMLYLDKIPQHAVVHEAVEIAKIRKH--GSEKFVN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L YG+ER LAI + S Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKALIEEYGEERALAIFASLFVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T L A L + F G +QD S+ + Sbjct: 182 SIRVTDMSRKAELHQLLGAEDSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGKT + ++ + ALD+ +LE + N +RL L Sbjct: 242 LAIEGEEQILDTCSAPGGKTVHMASYLTSGHIIALDLYDHKLELVEENAERLGLADKITT 301 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + + Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I ITP++ E DGFF R++ + Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438 >gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio crossotus DSM 2876] gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio crossotus DSM 2876] Length = 443 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 109/458 (23%), Positives = 190/458 (41%), Gaps = 32/458 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + L + K +L ++ L D+ + + T+ Sbjct: 1 MNQNVNTRNIILDALIEINEKDRFTHIVLPEVLK--KYQYLDNIDRSFISRTILGTVERK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +++ + + + K ++ +LR+S Q++Y++ V D+AV + AV + + K Sbjct: 59 ITLDYIINLFSKTPVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVRLSVK-KGFTA 117 Query: 120 FAKLVNSILRRVSREKIELLQRI--AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR ++REK ++ P W ++ YGKE AI A S Sbjct: 118 LKGFVNGVLRTIAREKNKIEMPQELWLKYSTPGWIVDKWLKEYGKENTEAILKAQYSKRP 177 Query: 178 IDLTV---KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + E +L A + E + + L FA G ++VQD Sbjct: 178 LTVRCNFNHCTREELVKRLTAENVRAKVIEEPDCALEIEGFDYLNKLNTFANGDFFVQDL 237 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + V+DLCAAPGGK+ + + V A DVS ++ + N+DR Sbjct: 238 SSMMVCYAINPEKDSYVIDLCAAPGGKSLHIAEFMDNTGFVEARDVSDNKVMMINENIDR 297 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L+L + DA + D V+ D PCS G + + PD+ + + + + Sbjct: 298 LNLCNIKAVVKDATVKWEDSVEKADVVIADLPCSGLGILNKKPDIKYHASEEKCHELSEL 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+K+L +VK GG FS C+L+ +++ V+ +L LV + D Sbjct: 358 QKKILDNSKEYVKHGGKFCFSTCTLNYEENMGNVEHILS--YGDYVLVDFED---RVPDN 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G + I PD ++ DGFF RR Sbjct: 413 MKKYYKKGILEIIPD-------ENNNFDGFFIALFRRK 443 >gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis M23590] gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis M23590] Length = 435 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 190/454 (41%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + + ++ + ++ + LS D+ L +V T++ +D Sbjct: 5 VRRHALDSIHAILNEGAYSNLEINDVLSS---QDLSAVDKGLYTELVYGTIKRKFTLDYY 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +VN Sbjct: 62 LRPFVQTKIKG---WVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAK-HRGGPHNGNIVN 117 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +ILR++ R + +R++ +P+W + YG + I A ++P Sbjct: 118 AILRQIMRSDLPNVDDITDEKKRMSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTET 177 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASA 230 + + + A+ + L ++ F EG+ +QD S+ Sbjct: 178 TVRANIVKASINDIIYALEQDGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 QL + VLD C+APGGK + V A D+ ++ ++ N+ +L Sbjct: 238 MFVAQLANLQAHDKVLDACSAPGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLG 297 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L + DA +++D +LVDAPCS G +R P++ +T+ + Q + Sbjct: 298 LNNVHAFQHDATQ-PYTEMYDKILVDAPCSGLGVLRHKPEIKYTQSKEGTQALVDLQLNI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +++S C++++ ++E V+ L+ + ++ + I Sbjct: 357 LNNVKHHLKPGGTIIYSTCTIEQLENENVIYSFLKENKDFEFETMIHPQTGEQI------ 410 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ---KTLQILPQDF--------NSDGFFITKIKRK 433 >gi|94498065|ref|ZP_01304628.1| Fmu (Sun) [Sphingomonas sp. SKA58] gi|94422500|gb|EAT07538.1| Fmu (Sun) [Sphingomonas sp. SKA58] Length = 414 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 145/437 (33%), Positives = 209/437 (47%), Gaps = 30/437 (6%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LL V+R+ L L A + L + D+ L AI LR LP +DA++D Sbjct: 1 MRLLDAVLRRGEPLELAL-----HGAAQGLPREDRALTHAIAAEVLRHLPDLDALIDGAT 55 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 LP + +LR+++AQ L +D +A + A+ D R V + R Sbjct: 56 RQILPD-DAKARMVLRIALAQTLRMDTPPHAAIATALPLV--DGGPRKLVHGVFGTVTRG 112 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--W 189 + +P R + +G A + A +D+T++ ET W Sbjct: 113 QPALPDP-------PTLPAEVLARWSDQWGAAMPQAAAHAYAVRPPVDVTLRDASETARW 165 Query: 190 AHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L+ G +RL P +I +LPGFAEG WWVQD +A+ P +L G + Sbjct: 166 TDALDGASFAPGHVRLPTHPVDGNGAIPALPGFAEGAWWVQDIAAACPARLLGKGDGRQA 225 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LDLCAAPGGKT Q+ +G +V A+D SK+RLE+L NL R L A DI+ D + P Sbjct: 226 LDLCAAPGGKTMQMAAAGWRVIAVDQSKKRLERLSENLARTGL-AADIVAADLRQWQPLA 284 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 DA+L+DAPCS+TG RRHPDVL I A Q +LL + ++ PGG +V++ Sbjct: 285 PVDAILLDAPCSATGIYRRHPDVLHRIGLRQIADLAELQAQLLARAADWLTPGGRLVYAT 344 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL++ + E+ + + L + P L+ + MA P+GW+R PD L Sbjct: 345 CSLEQAEGEDQIARFLDARPDFA----LDPIATSELPEGMAPDPQGWLRTLPDTLASA-- 398 Query: 426 VSSGMDGFFAVALRRLI 442 G DGFF L R Sbjct: 399 --GGTDGFFIARLVRRA 413 >gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 438 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 202/458 (44%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ NAR V+ L V+ + L+ + L + L +V T+++ Sbjct: 1 MKT--NARTVALDTLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + L ++ LL +S QI +LD V + AV+D A + AK + Sbjct: 56 LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKGYGRPKS 113 Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173 +LVN ILR + R + L ++ A +P W + +GK R I + Sbjct: 114 SGYRLVNGILRSLLRRREVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226 S I ++ D + L+ L ++ F +G VQ Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ + F N LD C+APGGKT Q + +VTALD+ +++L ++ N Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + +DA Y + FD +L+DAPCS G +RR P++ +T+ +DI Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +K GG +V+S CS+ +++EE V+K L + P K Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + A +P+G ++I PD DGFF Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434 >gi|160893330|ref|ZP_02074117.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50] gi|156865022|gb|EDO58453.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50] Length = 449 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 192/465 (41%), Gaps = 41/465 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +R + +L + + L + F ++++++ + + Sbjct: 1 MSKT--SREIVLDILLDIEKNDRFAGEALGEALRANQF--MNKKERAYIGRLTEGVTEQK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 R+D +L+ + + K ++ +LR++ +I Y+D V D A + V + + R Sbjct: 57 IRLDYILNQFSKVKVKKCKPVIRCILRMAAYEIFYMDSVPDEAACNEYVNLTAK-RGFRT 115 Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170 +N +LR V R K ++ ++ IPE + L N Y E++ I Sbjct: 116 LKGYMNGVLRNVCRNKAAIIFPKKEDGLEAYLSVKYSIPEELVKFLLNDYSAEQLEQILQ 175 Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221 A + + V T N + + I +PGF EG Sbjct: 176 AGETNRGTTVRVNTMHTTLEEFRNNLIEKGIKVEKGYYNPTSLIISGYDYIRMVPGFHEG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEK 278 ++ VQD S+S+ V G +LD+CAAPGGKT V A D+S+ +++K Sbjct: 236 LFTVQDESSSLQVLAAGIRPGNVILDVCAAPGGKTMYAAERTGEQGHVYARDISEEKIDK 295 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 L NL RL ++ +A + PK D VL D PCS G + R D+ + D Sbjct: 296 LEENLGRLEIHNVTTKVWNAMETDPKMIEKADVVLADLPCSGLGVMARKNDIKYHVTADS 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + A Q+ +L S+VKPGG ++FS C++D+ ++EE V+ L+ E L S Sbjct: 356 ISELAEIQKNILDACASYVKPGGTLIFSTCTIDRTENEENVEIFLKRH----EEYYLESL 411 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G+I + DGFF LRR Sbjct: 412 APYLPEKLKERGEKGYITLL--------QGIDHCDGFFISRLRRK 448 >gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 3008A-a] gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 3008A-a] Length = 437 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ +++L ++ L Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RLH + I++ +Y + FD +LVDAPCS G IRR P+V + + +D+ Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +L + G +V+S C++ +++E+VV++ L + P L P Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS I+I PD DGFF + Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435 >gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 27-2-CHN] gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 115-3-CHN] gi|282933237|ref|ZP_06338624.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii JV-V16] gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 27-2-CHN] gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 115-3-CHN] gi|281302741|gb|EFA94956.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii JV-V16] Length = 437 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 122/459 (26%), Positives = 209/459 (45%), Gaps = 45/459 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR V+ L V +++ L ++ F SQ+DQ V +V T+++ Sbjct: 1 MTNS--ARAVALATLIKVFKQKGYSNLSLSHALNENNF---SQKDQAFVTQLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENR 118 ++ L +L + L L+ LL +SV Q+++L V + AV+D A + AK K+N Sbjct: 56 LFLEYQLKDLLRTKLKED--YLKPLLLMSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNS 113 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDAC 172 +LVN ILR R L + + PEW + +G +R I + Sbjct: 114 SGYRLVNGILRSFLRRGQVLPSPKDPVHFLSIKESMPEWLVQYFIKNWGLKRTEKILPSL 173 Query: 173 ISPLYIDLTVKFD------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + + I + + ++ T + SIV+ F G +Q Sbjct: 174 NKRAENSIRIAKGANQTQIINSLKKQGYSLTESTLADNCFLVNHSIVNTDEFKAGQITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ V F N VLD CAAPGGKT+Q + KV +LD+ K++L ++ + Sbjct: 234 DEAASLVVDCFDLQENDYVLDTCAAPGGKTSQLAENLPQGKVISLDIHKKKLNLIKKYAE 293 Query: 285 RLHLY-AEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+H+ + + +DA + FD +LVDAPCS G +RR P++ + + D+ Sbjct: 294 RMHVDERVETLALDARKAAEHFSDTKFDKILVDAPCSGLGLLRRKPEIRYDKTMKDVHNL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L +K G +V+S CS+ +++E+V+ + L+ P E++P+ + +S Sbjct: 354 ARIQLGILNSAAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHP-EFEIMPITLSKVQS 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + ++I PD G DGFF ++ Sbjct: 413 KES---------LKILPDTY--------GSDGFFIAKMK 434 >gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus MV-3A-US] gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus CTV-05] gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US] gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus MV-3A-US] gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus crispatus CTV-05] Length = 453 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 127/454 (27%), Positives = 207/454 (45%), Gaps = 43/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR VS L V+ + L+ S LS DQ L IV T+++ ++ Sbjct: 19 ARAVSLETLIKVLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYRLFLEYQ 75 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKLV 124 L ++ + L K ++ LL +S+ Q+++LD V D AV+D A + AK+ K + +LV Sbjct: 76 LKGLVRTKLTEK--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLV 133 Query: 125 NSILRRVSRE------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177 N ILR +R + ++ ++ +PEW + L + +G ++ ++ ++ P Sbjct: 134 NGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKN 193 Query: 178 -IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDASAS 231 + ++ D E +L + I F EG +QD +AS Sbjct: 194 SVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTIQDEAAS 253 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + V+ F + VLD C+APGGKT Q + VTALD+ ++L +R N R+H+ Sbjct: 254 LVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNAQRMHVA 313 Query: 290 A-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 DA F +LVDAPCS G +RR P++ +T+ D+ Q Sbjct: 314 NKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQL 373 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L S +K G +V+S CS+ +++EEVV+K L++ P ELVP + Sbjct: 374 AILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE------ 426 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S G ++I PD+ G DGFF + Sbjct: 427 --SKTGMLKIMPDL--------DGNDGFFIAKFK 450 >gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641] gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641] Length = 440 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 204/457 (44%), Gaps = 41/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++ AR V+ L + + L G LS D+ LV IV T+ Sbjct: 8 MQT---AREVALSTLGEIFQDGAFSNISLKKSLGK---ATLSDVDKSLVTEIVYGTVSRK 61 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + + LL +S+ Q +YL+ + +AVV AVE AK+ K + Sbjct: 62 LTLEWYLSHFVA-DRDQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVELAKQRK--KG 118 Query: 120 FAKLVNSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN++LR++ + + +R++ +P W ++L + YG+ER +AI ++ Sbjct: 119 SEKYVNALLRKMLREELPSIDQIKRINKRLSIRYSLPVWLVKKLMDEYGEERAIAIFESL 178 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + E +L A L + F +G +QD ++ Sbjct: 179 YVRNKASVRVVDLDKKEDIKEQLQASDSLLASTALVKENGYFAGSDYFKQGKLTIQDETS 238 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKT + +VTALD+ +L+ ++ N +RL + Sbjct: 239 QLVAPALEVQPSDQVLDACAAPGGKTTHLASYLVDGQVTALDLYDHKLQLIQENAERLGV 298 Query: 289 -YAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++DA FD +LVDAPCS G IRR PD+ + +D D Q Sbjct: 299 ADKIQTKKLDASKVFEAFGADAFDKILVDAPCSGIGLIRRKPDIKYNKDNADFASLQAIQ 358 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L V+ GI+V+S C++ +++ +VV + L + P ELVPL+ Sbjct: 359 LEILDGVCQSVRKDGIIVYSTCTIIGEENFDVVDQFLETHPN-FELVPLDHE-------R 410 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF RR+ Sbjct: 411 KDILKDGCILITPELY--------GSDGFFISRFRRI 439 >gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium siraeum V10Sc8a] Length = 439 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 98/463 (21%), Positives = 194/463 (41%), Gaps = 47/463 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ AR ++ LL + + +LD + + +RD+ A+ L Sbjct: 1 MKT---ARQITLDLLIRMDTQGAYSNIILDHAFTQNDA---DRRDKAFSAALFYGVLERR 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ + + K ++ ++LR+ Q+L+++ V D A V+ +V + Sbjct: 55 MTLDYLIRYYSGIEFDKIKTAVVEILRMGFYQLLFMNSVPDSAAVNESVALCDYCNSTK- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 VN+ILR R + ++ + P+W ++ + G++R + + ++C Sbjct: 114 AKGYVNAILRTFLRNEKQIDYGNLTGEAKLSIEYSCPKWLVKKWNSELGEQRAMQMINSC 173 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVW 223 I V + +L + + L + + I + +G++ Sbjct: 174 FGRPPIYARVNTVRYTVDDVIGELESEGISATKNSLIDACIELANTKGIEQSSAYKKGMF 233 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD S+ I ++ + N +V+DLC+APGGKT + ++ + D+ ++ + Sbjct: 234 HIQDISSQICCKIAAPVFNETVVDLCSAPGGKTFTCAEIMNDRGRIYSYDLYDGKVSVIA 293 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL L E DA + P D V+ D PCS G IRR P++ + + + Sbjct: 294 NTAKRLDLTIITAAENDATKFNPGIPKADRVICDVPCSGLGVIRRKPEIKY-KPMKQLET 352 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-ELVPLNSAYW 398 QRK++ +VKPGG +V+S C++ + +++++V + L+ V +VPLN Sbjct: 353 LPDTQRKIINNAAEYVKPGGTLVYSTCTVSRTENDDIVDEFLKEHSDFVPVVVPLNIKGL 412 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + DGFF LR++ Sbjct: 413 ED-----------------SYKRTMLPCDVNGDGFFTATLRKV 438 >gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus crispatus 125-2-CHN] gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus crispatus 125-2-CHN] Length = 453 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 126/454 (27%), Positives = 206/454 (45%), Gaps = 43/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR VS L V+ + L+ S LS DQ L IV T+++ ++ Sbjct: 19 ARAVSLETLIKVLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYRLFLEYQ 75 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKLV 124 L ++ + L K ++ LL +S+ Q+++LD V D AV+D A + AK+ K + +L Sbjct: 76 LKGLVRTKLTEK--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLA 133 Query: 125 NSILRRVSRE------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177 N ILR +R + ++ ++ +PEW + L + +G ++ ++ ++ P Sbjct: 134 NGILRSFTRRGVILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKN 193 Query: 178 -IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDASAS 231 + ++ D E +L + I F EG +QD +AS Sbjct: 194 SVRISKLADKEQVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTIQDEAAS 253 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + V+ F + VLD C+APGGKT Q + VTALD+ ++L +R N R+H+ Sbjct: 254 LVVEAFDFEQDEHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNAQRMHVA 313 Query: 290 A-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 DA F +LVDAPCS G +RR P++ +T+ D+ Q Sbjct: 314 NKVKTKACDARKATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQL 373 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L S +K G +V+S CS+ +++EEVV+K L++ P ELVP + Sbjct: 374 AILTAVSSLLKKNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE------ 426 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S G ++I PD+ G DGFF + Sbjct: 427 --SKTGMLKIMPDL--------DGNDGFFIAKFK 450 >gi|104774278|ref|YP_619258.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 438 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ NAR V+ L V+ + L+ + L + L +V T+++ Sbjct: 1 MKT--NARTVALDTLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + L ++ LL +S QI +LD V + AV+D A + AK + Sbjct: 56 LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKS 113 Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173 +LVN IL + R L ++ A +P W + +GK R I + Sbjct: 114 SGYRLVNGILHSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226 S I ++ D + L+ L ++ F +G VQ Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ + F N LD C+APGGKT Q + +VTALD+ +++L ++ N Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + +DA Y + FD +L+DAPCS G +RR P++ +T+ +DI Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +K GG +V+S CS+ +++EE V+K L + P K Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + A +P+G ++I PD DGFF Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434 >gi|289168457|ref|YP_003446726.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6] gi|288908024|emb|CBJ22864.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6] Length = 438 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 203/451 (45%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S LS D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFINQAYSNIALNKHLKGSQ---LSVADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S Q+ YL+ + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK--VRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLGRKEEIQALLEASESSLSPSGLVKEQGHFAGHDLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFGQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +VVQ L S P ++ + + + Sbjct: 362 VCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEFEQVTLEHEC--------KDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|254437147|ref|ZP_05050641.1| Methyltransferase small domain family [Octadecabacter antarcticus 307] gi|198252593|gb|EDY76907.1| Methyltransferase small domain family [Octadecabacter antarcticus 307] Length = 410 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 151/427 (35%), Positives = 222/427 (51%), Gaps = 19/427 (4%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V + LL G+ A + LS D+ + + TLR L R D +L L Sbjct: 1 MLDQVTGEGK----LLPELIGEGALQHLSPEDRARAQRLTTETLRGLARADRMLARFLQK 56 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + P S++ +LR+ ++ + A Y VV+ VE R+K LVN++LR+V+ Sbjct: 57 TPP---LSVRNVLRLCTVELAGGE-AAYGVVNAGVEMVARNKRTSSMKGLVNAVLRKVAA 112 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 E E ++A +P W + L++ YG E V AI A + +D+T K D + L Sbjct: 113 EGPEGWAQLAT-PRMPGWLRSPLKDAYGPEIVAAIETAQFAGAPLDITAKGDPQAANETL 171 Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 +LPTG IRL++ + +LPGF G WWVQDA+A+IPVQ+ +LDLCAAPG Sbjct: 172 KGEILPTGTIRLRDA-GQVSTLPGFESGDWWVQDAAAAIPVQILAPQKGEKILDLCAAPG 230 Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVD 313 GKT QL ++GA VTA+D S+ R+ ++ NL R L A I FDA+L+D Sbjct: 231 GKTMQLAMAGADVTAVDSSEGRMIRVGENLKRTGLNATTITADAFAFTSGG--FDAILLD 288 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+TGTIRRHPD+ + +D + Q +++ +S + PGG +VF CSL + Sbjct: 289 APCSATGTIRRHPDLPYAKDGSEFGILIHQQARMIDHALSLLNPGGRLVFCTCSLLPDEG 348 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E V++ L L SA +S + +G +R+ PD GMDGF Sbjct: 349 EVQVEEALARHRG---LTVDASALDRSGIDPAWRTEDGGLRLRPDYWAD----KGGMDGF 401 Query: 434 FAVALRR 440 + V LR+ Sbjct: 402 YIVQLRK 408 >gi|332362987|gb|EGJ40776.1| RNA methyltransferase Sun [Streptococcus sanguinis SK49] Length = 438 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 122/453 (26%), Positives = 193/453 (42%), Gaps = 38/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V +R L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQALEILEEVFEERAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + L LL +S+ Q+L+LD + +A V AVE AK K R K VN Sbjct: 65 LSHLIE-DRNKLDNWLYILLMLSLYQMLFLDKIPQHAAVHEAVEIAKIRK--RGSEKFVN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L +G+ER LAI + S Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T L A L + F G +QD S+ + Sbjct: 182 SIRVTDMSRKAELRQLLGAENSLLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYNHKLELVEENAERLGLADKITT 301 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 302 KKLDATKVFETFGPDTFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + + Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHEI--------KDIVKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I ITP++ E DGFF R++ + Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438 >gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591] gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591] Length = 436 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 108/453 (23%), Positives = 189/453 (41%), Gaps = 33/453 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ +L V + L+ S LS +D+ L +V T+ Sbjct: 3 NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120 ++ L + + + LL +S+ Q++YLD +AVV+ AV AKR F Sbjct: 60 TLEWYLAHFIE-DREKLDTWIYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 118 Query: 121 AKLVNSILRRVSREKIELLQRIAGI----SIIPEWFKERLENFYGKERVLAISDACI--S 174 + + + + ++R +P W + L YG ER I + + Sbjct: 119 VNAILRKISQSTLPNPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 178 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + +T +E A +L A + L + F +G+ +QD ++ + Sbjct: 179 KASVRVTDGQQVERLAEELGAQHSQLSPVGLVKSHGHFAGTDHFKKGLITIQDETSQLVA 238 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + +LD CAAPGGKT + ++ KV ALD+ +L + N RL L + Sbjct: 239 PTLDIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENAHRLGLEDKI 298 Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +LVDAPCS G IRR PD+ + + + D Q ++L Sbjct: 299 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 358 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GGI+ +S C++ ++++EV+Q+ L++ P ++ + + Sbjct: 359 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 410 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G + ITP+ + DGFF LRR Sbjct: 411 VDGCLLITPEQYK--------TDGFFIGQLRRK 435 >gi|289551003|ref|YP_003471907.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis HKU09-01] gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus lugdunensis HKU09-01] Length = 435 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 98/454 (21%), Positives = 190/454 (41%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + + ++ + ++ + LS D+ L +V T++ +D Sbjct: 5 VRRHALDSIHAILNEGAYSNLEINDVLSS---QDLSAVDKGLYTELVYGTIKRKFTLDYY 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +VN Sbjct: 62 LRPFVQTKIKG---WVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAK-HRGGPHNGNIVN 117 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +ILR++ R + +R++ +P+W + YG + I A ++P Sbjct: 118 AILRQIMRSDLPNVDDITDEKKRMSIAYSLPKWIVDHWVTHYGLAQTHRIGQALLTPTET 177 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASA 230 + + ++A+ + L ++ F EG+ +QD S+ Sbjct: 178 TVRANIVKASINDIIDALEQDGYTVTKDSDILSCLHIQGRPVIEARAFKEGLISIQDKSS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 QL + VLD C+APGGK + V A D+ ++ ++ N+ +L Sbjct: 238 MFVAQLANLQAHDKVLDACSAPGGKACHMAEILAPTGSVDATDIHAHKINLIKYNIKKLG 297 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L + DA +++D +LVDAPCS G +R P++ +T+ + Q + Sbjct: 298 LNNVHAFQHDATQ-PYTEMYDKILVDAPCSGLGVLRHKPEIKYTQSKEGTQALVDLQLNI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +++S C++++ ++E V+ L+ + E P+ Sbjct: 357 LNNVRHHLKPGGTIIYSTCTIEQLENENVIYSFLKENK-DFEFEPMIHPQTGEQI----- 410 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ---KTLQILPQDF--------NSDGFFITKIKRK 433 >gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 440 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 194/452 (42%), Gaps = 36/452 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V L+ E + LS +D+ LV IV T+ ++ Sbjct: 8 QARGLALLVLENVFEDGAYSNIALNQELSHT---TLSPKDKSLVTEIVYGTVARKITLEW 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + LL +S+ Q++YLD + +AVV+ AV AK + K V Sbjct: 65 YLAHYI-KDRDKLDSWVYYLLMLSLYQLVYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123 Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175 N++LRR + +R + + +P W ++L + +G+ER AI + + Sbjct: 124 NAVLRRFTKEELPNPKTIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAAAIMQSLFVRNK 183 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 I +T + A + L + FA G +QD S+ + Sbjct: 184 ASIRVTDPDKLAEIKAATGAEQSILSPVGLVKTSGHFAGTDYFANGDITIQDESSQLVAP 243 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292 N +LD CAAPGGKT + + +TALD+ +L + N RLH+ Sbjct: 244 TLDIQGNEDILDACAAPGGKTTHMASYLKKGHITALDLYDHKLTLVMDNAKRLHVADKIS 303 Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +MD ++ FD +LVDAPCS G IRR PD+ + ++ D Q ++L Sbjct: 304 TQKMDATTVHEHFVPDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILD 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++ GGI+ +S C++ +++ +V+ K L + P N K + Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I ITP+ + DGFF ++R+ Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439 >gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026] Length = 434 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 192/453 (42%), Gaps = 41/453 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKPADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L+ LL +S Q +L+ V A+ D A + AK+ K N KL Sbjct: 60 QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117 Query: 124 VNSILRRVSREKIELLQRIAGISI------IPEWFKERLENFYGKERVLAISDACISPLY 177 +N ILR + R+ L + P+W E L + +G+ + I P Sbjct: 118 INGILRALERQGEILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAA 177 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + D E +L L + F G +QDA+ Sbjct: 178 NSIRMTTKESDFEEIKEELKKDNFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F + VLD C+APGGKT Q+ + V ALD+ + +L +R +RLH Sbjct: 238 ASLAVDAFDFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + + + FD +LVDAPCS G IRR P++ + + +DI A Q + Sbjct: 298 VSDKVKTKALDARKANQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKIQLAI 357 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + GG +V+S C++ ++ E VV++ L+ P EL+P+ Sbjct: 358 LESVSGLLANGGELVYSTCTISYEEDEGVVKQFLKVHP-DFELIPVQVGKLP-------- 408 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P S G DGFF L++ Sbjct: 409 -KQEMVRIFPS--------SDGSDGFFIAKLKK 432 >gi|149006597|ref|ZP_01830296.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74] gi|147761895|gb|EDK68858.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74] Length = 438 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 124/451 (27%), Positives = 200/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S LS D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANDSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Corynebacterium efficiens YS-314] gi|259507332|ref|ZP_05750232.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314] gi|23493558|dbj|BAC18528.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165043|gb|EEW49597.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314] Length = 490 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 165/455 (36%), Gaps = 39/455 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V +L + L RD I TLR L +DA Sbjct: 54 KPREIAYEVLDRVRTGDAYANLVLPRLLTK---QKLDTRDAGFATEITYGTLRNLGLLDA 110 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + + +LR+ Q+L+ V D+A VD V+ K+ + N Sbjct: 111 VISSAANRPVKDIDPEVLDVLRIGAYQVLFTRVEDHAAVDTTVKMVGGLKKF-NATGFAN 169 Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +++R ++R E R+A + PEW + E + A Sbjct: 170 AVMRTITRTPAEQWLDKLEPEGEIARVAFRTAHPEWIAQSFSRLLPAEELEDALAADSER 229 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + + +G+ VQD + + Sbjct: 230 PVVHLVARPGEISAEELALITGGEEGRYSPYAVYLEGGDPGDIDPVQQGLAAVQDEGSQL 289 Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRL 286 + + LDLCA PGGK A + A +D + + + + Sbjct: 290 IARALVEAPVEGEDHGRWLDLCAGPGGKAALVGALARMDGARVDAVEVSDHRAKLVERSV 349 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D +D LVDAPCS G +RR P+ W + DI Q + Sbjct: 350 SGLPVKVHVGDGRTINLDDGYDRALVDAPCSGLGALRRRPEARWRKQESDIAPLNTLQYE 409 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL I+ V+PGG+VV+S CS D +++ EVV + L + +P+ + M Sbjct: 410 LLESAINRVRPGGVVVYSTCSPDLRETREVVDRALAA-------LPIEELDAAAFMPGMD 462 Query: 407 LSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + EG +++ P G D F LR+ Sbjct: 463 NTGEGKSVQMWPH--------RHGTDAMFVAILRK 489 >gi|182684677|ref|YP_001836424.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14] gi|182630011|gb|ACB90959.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14] Length = 438 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 125/451 (27%), Positives = 201/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S LS D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +SV Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. equi 4047] gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. equi 4047] Length = 442 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 110/451 (24%), Positives = 197/451 (43%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + ++ + L + + + LS +D+ LV IV T+ ++ Sbjct: 11 ARGQALLIVEDIFDHGAYSNLALKHQLAN---QFLSDKDKALVTEIVYGTISRKITLEWY 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + R + LL +S+ Q+ YLD V +A+V+ AV AK R KLVN Sbjct: 68 LAHYIE-DRDRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVN 126 Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+++ + + A +P W ++L + +G+ER +AI ++ S Sbjct: 127 AVLRQLTNKPLPDIKSIKRKNKYYAVAYSVPVWLVKKLIDQFGEERAVAIMESLFVRSRA 186 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T ++ + L + + + F G +QD ++ + Sbjct: 187 SIRVTDLTKLDEIKQATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPT 246 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 +LD C+APGGKTA + ++ KV ALD+ + +L + N RL + + Sbjct: 247 LDIQGQEMILDACSAPGGKTAHIASYLTSGKVVALDLYEHKLALVNENAKRLGVADRIET 306 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 +D + K FD +LVDAPCS G IRR PD+ + ++ D + Q ++L Sbjct: 307 KVLDAREVHKHFAKNSFDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSS 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V+ K L+ P N + + Sbjct: 367 VCQTLRKGGIITYSTCTIFDEENFQVIDKFLQRHP--------NFEQVTLKHAQADIVKD 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + ITP+ + DGFF +RR+ Sbjct: 419 GCLMITPEQYQ--------TDGFFIGQVRRV 441 >gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002] Length = 431 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 117/463 (25%), Positives = 197/463 (42%), Gaps = 63/463 (13%) Query: 5 MNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 MN R + LL + +K+ S + LL+ + +++D+ L +V+ LR+ I Sbjct: 1 MNTRQAAFFLLFEIEKKKFSGVDSLLEKFHQKLK----NEKDRALFVELVHGVLRYKNLI 56 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++FV + + +LRV+ ++L+L+ + +YA V+ A E A + N H Sbjct: 57 DYYINFVAKKGVK--DKRILNILRVATYELLFLEKIPEYATVNEACEIASKI--NPHLKA 112 Query: 123 LVNSILRRVSREKIE------------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 VN+ILR + R K + ++ P + + LE YG E+ + I + Sbjct: 113 FVNAILRNIIRNKNQIEESLERIKDVNYKSYLSIKLSYPRFLIDYLEESYGLEKTIKILE 172 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI-----RLKELPESIVSLPGFAEGV 222 + + + ++ T +L + L +I + +G Sbjct: 173 FLNTKPPQSIKINTKKTNVNTLTQELEKNGFKYEINSRNNEIVLILKGNIKETELYKKGY 232 Query: 223 WWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKL 279 ++ QD ++S+ VLDLCAAPGGK V V A D+++ +L+ L Sbjct: 233 FYFQDLASSLVVKSNQEDFERAKKVLDLCAAPGGKTFNCAEVIDGFVVACDINEHKLDIL 292 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R N+ RL + + DA + P FD V+ D PC+ G IR+ PD+ W + DI Sbjct: 293 RENILRLGFDNIIVAKNDAEVFNPDFAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDI 352 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q ++L ++K GGI+ +S C+L K+++EE V + L LV + Sbjct: 353 ENLHELQVRILDNSAGYLKRGGILFYSTCTLGKKENEETVIEFLDKHK-DFSLVSQTT-- 409 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I PD E DGFF LR+ Sbjct: 410 -----------------IFPDEFE--------CDGFFIAKLRK 427 >gi|126463525|ref|YP_001044639.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126105189|gb|ABN77867.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 410 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 137/434 (31%), Positives = 212/434 (48%), Gaps = 29/434 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ LL V+ + L+ L G +A ++ + + + LR L D + Sbjct: 5 ARGMAVTLLDAVLGEGKLLSQALADLPGTAA-----PAERARAQRLASSVLRHLGPADRL 59 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + P +++ +LR++ ++ A + VV AV+ A+R + +H A LVN+ Sbjct: 60 LAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLAGLVNA 116 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 +LRR++ L +P W ++ L +G+ V AI +P +DLT + + Sbjct: 117 VLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLTARPGL 172 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 L P + +LPG+ G WWVQDA+A++ V+L SV Sbjct: 173 SAPGEPLPTGSFRL------RAPGQVSALPGYEAGEWWVQDAAAALAVKLLDPQPGESVA 226 Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 DLCAAPGGKT QL +GA+VTALD+S+ RL +LR NL R L AE + Sbjct: 227 DLCAAPGGKTLQLAAAGARVTALDISEARLGRLRENLARTGLQAEVV--AADLLTWQGGP 284 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 F+A+L+DAPCS+TGTIRRHPD+ + +D ++ Q +L + + PGG +VF C Sbjct: 285 FEAILLDAPCSATGTIRRHPDLPFVKDGSELPGLVALQAAMLDHALGLLAPGGRLVFCTC 344 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL +++ E + +L P P + EG +R+ PD + Sbjct: 345 SLLEEEGEAQLAALLERHPELTVERPTLPGV-----EPDWIGAEGGLRLRPDFWAEA--- 396 Query: 427 SSGMDGFFAVALRR 440 GMDGFF +RR Sbjct: 397 -GGMDGFFMARVRR 409 >gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC 27755] gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC 27755] Length = 433 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 93/463 (20%), Positives = 185/463 (39%), Gaps = 54/463 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +N R + L + R L ++ L +R++ + +V TL Sbjct: 1 MATQVNVREIILETLLLITRDGEYSHIALKNVL--DKYQYLEKRERAFITRVVEGTLERQ 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + ++K ++ +LR SV Q+ Y+D V D AV + AV+ A + K + Sbjct: 59 IEIDYIINQFSKVKVNKQKPVIRTILRSSVYQLKYMDHVPDSAVCNEAVKLAGK-KGFVN 117 Query: 120 FAKLVNSILRRV--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR + + + ++ +P W E+ + YGKE V + A Sbjct: 118 LKGFVNGVLRNISRNLDMLSYPDPSNEIACLSVRYSLPMWMVEKWISVYGKETVEKMGKA 177 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE---------LPESIVSLPGFAEGV 222 + + + + + + R + + L F +G Sbjct: 178 FLEERPVTVRRNTAVVSKEEFEKELEKDGVVYRRHPVLPYAYELTNYDYLAGLLAFQKGY 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 +++QD S+ + V+D+CAAPGGK L V A D+++ ++ + Sbjct: 238 FYIQDISSMQVAEWAEPKEGDYVIDVCAAPGGKAIHLAEKLSGTGYVEARDLTEYKVALI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R L + + DA + D ++ D PCS G + + PD+ + Sbjct: 298 EENIERSGLDNIEAVCQDATINNEASYEKADILIADLPCSGLGILGKKPDLKSKMTVEMA 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR++L ++VKPGG +++S C+++++++E+ + + P ++ Sbjct: 358 KGLADLQRQILTVVHNYVKPGGKLLYSTCTINREENEDNTAWFVENFPEFEKIREK---- 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P DGF+ R+ Sbjct: 414 ----------------QMLPGSDMG--------DGFYIAEFRK 432 >gi|307706106|ref|ZP_07642925.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK321] gi|307618506|gb|EFN97654.1| ribosomal RNA small subunit methyltransferase B [Streptococcus mitis SK321] Length = 437 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 204/457 (44%), Gaps = 38/457 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR +S +L V + L+ S LS D+ L +V T+ Sbjct: 1 MTKVETARSLSLAVLEDVFINQAYSNIALNKHLKGSQ---LSVADKGLATELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--VRKKG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI ++ Sbjct: 115 SEKLVNAVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAQAIFESL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A + L + FA+G +QD S+ Sbjct: 175 LVRNKASIRVTDLGRKEEIQVLLEASVSSLSPSGLVKEQGHFAGHDLFADGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGQNSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VVQ L S P ++ + Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVQAFLESHPEFEQVTLEHEC-------- 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 407 KDIMKDGCILITPELY--------GSDGFFISQFRKI 435 >gi|324991975|gb|EGC23897.1| RNA methyltransferase Sun [Streptococcus sanguinis SK405] Length = 438 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 121/453 (26%), Positives = 191/453 (42%), Gaps = 38/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQVLEILEEVFEEGAYSNIALNRALSQSP---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + + LL +S+ Q+LYLD + +A V AVE AK K R K +N Sbjct: 65 LSHLIE-DRDKLDNWIYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGSEKFIN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L YG+ER LAI + S Sbjct: 122 ALLRRIEREGVSDFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T L A L + F G +QD S+ + Sbjct: 182 SIRVTDMSRKADLRQLLGAENSLLSPSALVKKQGHFAGHQLFESGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L Sbjct: 242 LDIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAERLGLADKITT 301 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + + Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I ITP++ E DGFF R++ + Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438 >gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1] gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1] Length = 462 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 109/456 (23%), Positives = 211/456 (46%), Gaps = 39/456 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +++ ++ ++ SL+ L ++ +++ + R PR++++ Sbjct: 23 ARQVAIKVITNILLQQGSLSTQLARH-----QLDVASEHAPMLKELCFGVCRQYPRLNSI 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +L K L +L + + Q+ Y++ D+A V+ VE A R KL+N+ Sbjct: 78 ALHLLAHPFEEKDTDLYAVLLLGLYQLTYMNTPDHAAVNETVE-ACRILNKDWATKLMNA 136 Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE ++++ + + +P+W +R + E + I +A + + + V Sbjct: 137 VLRRYQREADDIVEILEAQPSVEFNMPKWLVKRFNKHWP-EHLEEIIEASNTHPPMCIRV 195 Query: 183 K---FDIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASASIP 233 ET+ +L + + T + + LPGF +G VQD +A + Sbjct: 196 NESLVSRETYKEQLLDLGINTEKGEFSDSALYLKNAVRVGELPGFDDGYVSVQDEAAQLS 255 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-------AKVTALDVSKRRLEKLRCNLDRL 286 + VLD CAAPGGKT L+ ++TA+++ R+EK+ NL+RL Sbjct: 256 AHILSPKAGEKVLDACAAPGGKTGHLLEKANSAGLSSMELTAVELESWRMEKIESNLERL 315 Query: 287 HLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 A D + + FD +L+D PC++TG IRR+PD+ R DI Q Sbjct: 316 GYSAQLICADASDLDAWWDGEHFDKILLDVPCTATGVIRRNPDIKINRKPADIDDLVIIQ 375 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R++L + + +K GG ++++ CSL +++E+ +Q L + E+ + A +++ Sbjct: 376 REILNKVWTTLKSGGFMLYATCSLMPEENEQQIQHFLANQEDAKEVALNSLAADLAVEWG 435 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +S ++ ++G DGF+ L++ Sbjct: 436 IPVS----------HGRQLFPQANGHDGFYYCLLQK 461 >gi|148997789|ref|ZP_01825353.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae SP11-BS70] gi|147756288|gb|EDK63330.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae SP11-BS70] Length = 438 Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 198/451 (43%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S LS D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + F G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFTNGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus N315] gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus Mu3] gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315] gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50] gi|156721673|dbj|BAF78090.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus 04-02981] Length = 461 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 30 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 86 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 87 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 142 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 143 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 202 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 203 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 262 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 263 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 322 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 323 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 381 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 382 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 436 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 437 ----KTLQIMPQDF--------NSDGFFITKIKRK 459 >gi|221640599|ref|YP_002526861.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131] gi|221161380|gb|ACM02360.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131] Length = 410 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 137/434 (31%), Positives = 213/434 (49%), Gaps = 29/434 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ LL V+ + L+ L G +A ++ + + + LR L D + Sbjct: 5 ARGMAVTLLDAVLGEGKLLSQALADLPGTAA-----PAERARAQRLASSVLRHLGPADRL 59 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + P +++ +LR++ ++ A + VV AV+ A+R + +H A LVN+ Sbjct: 60 LAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLAGLVNA 116 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 +LRR++ L +P W ++ L +G+ V AI +P +DLT + + Sbjct: 117 VLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLTARPGL 172 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 L P + +LPG+ G WWVQDA+A++ V+L SV Sbjct: 173 SAPGEPLPTGSFRL------RAPGQVSALPGYEAGEWWVQDAAAALAVKLLDPQPGESVA 226 Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 DLCAAPGGKT QL +GA+VTALD+S+ RL +LR NL R L AE + Sbjct: 227 DLCAAPGGKTLQLAAAGARVTALDISEARLGRLRENLARTGLQAEVV--AADLLTWQGGP 284 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 F+A+L+DAPCS+TGTIRRHPD+ + +D ++ Q +L + + PGG +VF C Sbjct: 285 FEAILLDAPCSATGTIRRHPDLPFVKDGSELPGLVALQAAMLDHALHLLAPGGRLVFCTC 344 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL +++ E + +L P P + EG +R+ PD+ + Sbjct: 345 SLLEEEGEAQLAALLGRHPELTVERPALPGVEPG-----WIGAEGGLRLRPDLWAEA--- 396 Query: 427 SSGMDGFFAVALRR 440 GMDGFF +RR Sbjct: 397 -GGMDGFFMARVRR 409 >gi|146297084|ref|YP_001180855.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 433 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 117/467 (25%), Positives = 199/467 (42%), Gaps = 65/467 (13%) Query: 1 MKSGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK +N R + ++ + RK ++ L++ + D+ L +V+ LR+ Sbjct: 1 MK--INTRRAAFLVIFEIESRKNVNADALMEKYHHKLKKTE----DRALFVELVHGVLRY 54 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D ++FV + + +LR++ ++L+LD + DYA V+ A E AK +N+ Sbjct: 55 KNILDYYINFVAKKGVK--DKKILNILRIATYELLFLDKIPDYATVNEACELAKNVNKNQ 112 Query: 119 HFAKLVNSILRRVSREKI------------ELLQRIAGISIIPEWFKERLENFYGKERVL 166 VN+ILR + R K + ++ P++ + LE YG ++ + Sbjct: 113 --KDFVNAILRNIIRRKDEIEKALERVKEVNIKDFLSIKLSYPKFLIDYLEKSYGFDKTV 170 Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGF 218 I + + + + + KL A + + +I + Sbjct: 171 KILEFLNTKPLQSIKINTKKISQAEFLKKLEACGYEYKVPELNREIVYIVKGNIKESELY 230 Query: 219 AEGVWWVQDASASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRR 275 +G ++ QD ++S V+ S+LDLCAAPGGKT V + DV+K + Sbjct: 231 RDGYFYYQDLASSFIVKWNRDDFEKASSILDLCAAPGGKTFNCAEVTRGFVVSCDVNKSK 290 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 +E+LR NL RL + E DA FD V+ D PCS GTIR+ PD+ W + Sbjct: 291 IERLRENLLRLGFDNVVVAENDALTLNEDFVGKFDIVIADLPCSGFGTIRKKPDIKWNKT 350 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +DI Q K+L ++K GGI+ +S C+L +++E+ V K L L+ Sbjct: 351 KEDIENLHELQLKMLDNAAQYLKEGGIIFYSTCTLGHRENEDTVLKFLEKHK-DFSLISQ 409 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 N+ I PD + DGFF L++ Sbjct: 410 NT-------------------IFPDEYK--------CDGFFIAKLKK 429 >gi|303261834|ref|ZP_07347780.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292] gi|303263697|ref|ZP_07349619.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397] gi|302636917|gb|EFL67406.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292] gi|302646735|gb|EFL76960.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397] Length = 438 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 125/451 (27%), Positives = 200/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S LS D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +SV Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIANIKRKNKRDSIAYSLPVWLVTKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANSSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVADRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDTKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 438 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 120/458 (26%), Positives = 200/458 (43%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ NAR V+ L V+ + L+ + L + L +V T+++ Sbjct: 1 MKT--NARTVALATLMKVINQGSYSNISLNHALKAAK---LPGEESRLATNLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + L ++ LL +S QI +LD V + AV+D A + AK + Sbjct: 56 LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKAYGRPKS 113 Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173 +LVN IL + R L ++ A +P W + +GK R I + Sbjct: 114 SGYRLVNGILHSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226 S I ++ D + L+ L ++ F +G VQ Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ + F N LD C+APGGKT Q + +VTALD+ +++L ++ N Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + +DA Y + FD +L+DAPCS G +RR P++ +T+ +DI Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +K GG +V+S CS+ +++EE V+K L + P K Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + A +P+G ++I PD DGFF Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434 >gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus D139] gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus H19] gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus D139] gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus subsp. aureus H19] Length = 435 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 97/455 (21%), Positives = 187/455 (41%), Gaps = 44/455 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ ++ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSENELNIM---DKALFTEIVYGTIKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVDLQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ + + + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKNFEFEQFQHPITGELV----- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 411 ----KTLQIMPQDF--------NSDGFFITKIKRK 433 >gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2] gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2] Length = 458 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 112/460 (24%), Positives = 198/460 (43%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ L + R LL L+ +D L+ +V T+ +D Sbjct: 18 VRFVALEALVRIERGGAYSNLLLRELMNQGR---LNDKDGRLLTEMVYGTISRQLLLDYY 74 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + ++ + ++ LLR+S+ Q+LYLD V ++A+++ AVE AK K N K VN Sbjct: 75 LANFIKNA-KKVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIAKA-KGNPGIGKFVN 132 Query: 126 SILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177 +LR + R + + L+R+A +P W ER G ++ + + + P + Sbjct: 133 GVLRTIQREGVPALDQIKDPLERLAIEISMPLWLTERFVAQIGSDKTRELGLSLLVPSHA 192 Query: 178 ---IDLTVKFDIETWA----HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 +DL E + A + + + +G+ +QD S+ Sbjct: 193 SGRLDLQRITRNEAILQLQEEGIEARESQLSPYGIVADKGFLAGSSLYHDGLLTIQDESS 252 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGKT + G KVTALD+ +++ + N +R Sbjct: 253 MLVAPALHIAPEHQVLDACAAPGGKTTHIASFLSAEAGGKVTALDIHPHKVKLITENAER 312 Query: 286 LHLY----AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + AE + + + ++ FD +LVDAPCS G +RR PD+ + + D+ + Sbjct: 313 LAVSEVVQAEVMDAREVAQHFEEQQFDRILVDAPCSGLGLMRRKPDIKYNKQAADLERLP 372 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L +K GI+++S C++ ++++ VV+ L P E + ++ + Sbjct: 373 EIQLAILESAAPTLKNSGIMIYSTCTIMLEENQAVVEAFLADHP-EFERIDVSVNADIAA 431 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + + I P DGFF LR+ Sbjct: 432 NIN-----DQMLTIYPQDFM--------TDGFFISCLRKK 458 >gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium accolens ATCC 49725] gi|227075602|gb|EEI13565.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium accolens ATCC 49725] Length = 484 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 100/454 (22%), Positives = 159/454 (35%), Gaps = 37/454 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ ++ V + +L + L+ RD I TLR L +DA Sbjct: 43 PARAVAFDVVRRVSEEDAFANLVLPKALRK---QKLTGRDAAFATEITYGTLRTLGVLDA 99 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L + LR+ Q+LY V +A VD +V N Sbjct: 100 VIAQCSSRELEAISPVVIDALRLGTYQVLYTRVEPHAAVDTSVRLVVA-GGEEKAKGFAN 158 Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 ILR ++R + A P W E E + A+ A Sbjct: 159 GILRTITRTPPNEWLKRLAPEGEIAGLAFRHAHPTWIAESFARVVDPEELPAVLAADSER 218 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + L +G+ VQD + + Sbjct: 219 PSVHLVARPGEISAEELALITGNEEGTYSPYAVYMDSGDPGQLEPVQQGMAAVQDEGSQL 278 Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + + LDLCA PGGK A + +A D + + + + Sbjct: 279 IARAVCEVPVSGTDQGRWLDLCAGPGGKAALMGALARIESAHVDAVEVSPHRAKLIEKTV 338 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D + FD +LVDAPCS G +RR P+ W + DI + + Q + Sbjct: 339 QGLPVTVHVADGRNPQVGSGFDRILVDAPCSGLGALRRRPEARWRKSEADIAELSTLQFE 398 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + V+PGG+VV+S CS D +++ ++V + + L + I Sbjct: 399 LLSSALKLVRPGGVVVYSTCSPDLRETRDIVDQAVEK------LGAQELDAREFIPDMGN 452 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E +++ P G D F LRR Sbjct: 453 VGKEKSVQMWPH--------RHGTDAMFMAVLRR 478 >gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304567896|gb|EFM43477.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length = 484 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 102/454 (22%), Positives = 158/454 (34%), Gaps = 37/454 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ ++ V + +L + LS RD I TLR L +DA Sbjct: 43 PARAVAFDVVRRVSEEDAFANLVLPKALRK---QKLSGRDAAFATEITYGTLRTLGVLDA 99 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L + LR+ Q+LY V +A VD +V N Sbjct: 100 VIAQCSSRELEAISPVVIDALRLGTYQVLYTRVEPHAAVDTSVRLVVA-GGEEKAKGFAN 158 Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 ILR ++R + A P W E E + A A Sbjct: 159 GILRTITRTPPNEWLKRLAPEGEVAGLAFRHAHPTWIAESFARVVDPEELPAALAADSER 218 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + L +G+ VQD + + Sbjct: 219 PSVHLVARPGEISAEELALITGNEEGTYSPYAVYMDSGDPGQLEPVQQGMAAVQDEGSQL 278 Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + + LDLCA PGGK A + +A D + + + + Sbjct: 279 IARAVCEVPVNGTDQGRWLDLCAGPGGKAALIGALARIESAHVDAVEVSPHRAKLIEKTV 338 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D + FD +LVDAPCS G +RR P+ W + DDI + + Q + Sbjct: 339 QGLPVTVHVADGRNPQVGSGFDRILVDAPCSGLGALRRRPEARWRKSEDDIAELSTLQFE 398 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + V+PGG+VV+S CS D +++ ++V + + L I Sbjct: 399 LLSSALKLVRPGGVVVYSTCSPDLRETRDIVDQAVEK------LGAQELDARDFIPDMGN 452 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E +++ P G D F LRR Sbjct: 453 VGKEKSVQMWPH--------RHGTDAMFMAVLRR 478 >gi|332364575|gb|EGJ42344.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1059] Length = 438 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 122/453 (26%), Positives = 190/453 (41%), Gaps = 38/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQVLEILEEVFEEGAYSNIALNRALNQSL---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + L LL +S+ Q+LYLD + +A V AVE AK K R K VN Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAAVHEAVEIAKIRK--RGSEKFVN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L +G+ER LAI + S Sbjct: 122 ALLRRIEREGVSDFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T L A L + F G +QD S+ + Sbjct: 182 SIRVTDMSRKAELRQLLGAEDSLLSPSALVKRQGHFAGHQLFERGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGKT + ++ +TALD+ +LE + N RL L Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAKRLGLADKITT 301 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + + Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I ITP++ E DGFF R++ + Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438 >gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LactinV 11V1-d] gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195] gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LactinV 11V1-d] gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195] Length = 437 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 207/460 (45%), Gaps = 45/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVQTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ +++L ++ L+ Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLN 293 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RLH + I++ +Y + FD +LVDAPCS G IRR P+V + + +D+ Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFDQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +L + G +V+S C++ +++E+VV++ L + P L P Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS I+I PD DGFF + Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435 >gi|15675503|ref|NP_269677.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes M1 GAS] gi|13622700|gb|AAK34398.1| putative RNA-binding Sun protein [Streptococcus pyogenes M1 GAS] Length = 440 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 110/451 (24%), Positives = 203/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q+ YLD +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D + K FD +LVDAPCS G IRR PD+ + +++ Q ++L Sbjct: 305 RKLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQGFNALQAIQLEILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V++ L+S P N K + + Sbjct: 365 VCQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ ITP+ + DGFF +RR+ Sbjct: 417 GYLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335] gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1] gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2053A-b] gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 143-D] gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335] gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners LEAF 2053A-b] gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 143-D] Length = 437 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVQTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ +++L ++ L Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RLH + I++ +Y + FD +LVDAPCS G IRR P+V + + +D+ Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +L + G +V+S C++ +++E+VV++ L + P L P Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS I+I PD DGFF + Sbjct: 410 ------LSKCKMIKIFPDDY--------NSDGFFIAKFVK 435 >gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 442 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 197/451 (43%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + ++ + L + + + LS +D+ LV IV T+ ++ Sbjct: 11 ARGQALLIVEDIFDHGAYSNLALKHQLAN---QSLSDKDKALVTEIVYGTISRKITLEWY 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + R + LL +S+ Q+ YLD V +A+V+ AV AK R KLVN Sbjct: 68 LAHYIE-DRDRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVN 126 Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+++ + + A +P W ++L + +G+ER +AI ++ S Sbjct: 127 AVLRQLTNKPLPDIKSIKRKNKYYAVAYSVPVWLVKKLIDQFGEERAVAIMESLFVRSRA 186 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T ++ + L + + + F G +QD ++ + Sbjct: 187 SIRVTDLTKLDEIKQATGSEQSLLARTGLTKRAGNFAASSYFINGDITIQDETSQLVAPT 246 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---- 290 +LD C+APGGKTA + ++ KV ALD+ + +L + N RL + Sbjct: 247 LDIQGQEMILDACSAPGGKTAHIASYLTSGKVVALDLYEHKLALVNENAKRLGVADRTET 306 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + + K FD +LVDAPCS G IRR PD+ + ++ D + Q ++L Sbjct: 307 KVLDAREVHKHFAKNSFDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSS 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V+ K L+ P N + + Sbjct: 367 VCQTLRKGGIITYSTCTIFDEENFQVIDKFLQRHP--------NFEQVTLKHAQADIVKD 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + ITP+ + DGFF +RR+ Sbjct: 419 GCLMITPEQYQ--------TDGFFIGQVRRV 441 >gi|150016032|ref|YP_001308286.1| sun protein [Clostridium beijerinckii NCIMB 8052] gi|149902497|gb|ABR33330.1| sun protein [Clostridium beijerinckii NCIMB 8052] Length = 439 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 194/457 (42%), Gaps = 41/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +L V+ + +L E + LS +D+ L+ IV LR +D Sbjct: 1 MNCRKLAVKILGRVLNEGAYSNIVLAKELNE---AELSDKDKALLTEIVYGVLRRKKTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + L + +LRV++ Q+ +LD + YA + AVE+AK EN +KL Sbjct: 58 IIISNFV-KDLKLMNKDILNILRVAIYQMNFLDKIPSYAACNEAVEEAKEISEND--SKL 114 Query: 124 VNSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR ++ + A W L YG+ I S Sbjct: 115 VNGILRNFTKNPDDIEVVGNKIDEYAYKFSFEPWMIRLLIKQYGENVSKKIMSGLNSIPQ 174 Query: 178 IDLTVKFDIETWAH---------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + V + + + +SI + P F EG VQD Sbjct: 175 VSVRVNELKADYDEVFEKLEELEYEVEEGVICPEAICIKGGKSIENNPLFQEGKITVQDE 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 SA I L ++V DLC+APGGKT ++ + KV A D+ + +L ++ N +R Sbjct: 235 SAMIIAPLLELEEGMTVTDLCSAPGGKTTHIAEMLQNTGKVLAYDLHESKLGLIKENCER 294 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + ++ DA P D +L+D PCS G IR+ P++ W + +++ + Sbjct: 295 LGITNVEVNTSDATKLNPDLIASSDRILIDVPCSGLGIIRKKPEIKWNKTRNELREIIKV 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR ++ ++K GI+++S C+L+K+++EE ++ + + Sbjct: 355 QRDIMECAWMYLKEDGIMIYSTCTLNKEENEENIEWFVSRHKDCSV-----KKIFIGKQD 409 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +G + I P+ MDGFF L + Sbjct: 410 NLVYNRDGSLTIMPN---------ENMDGFFVTKLEK 437 >gi|89056531|ref|YP_511982.1| Fmu (Sun) [Jannaschia sp. CCS1] gi|88866080|gb|ABD56957.1| Fmu (Sun) [Jannaschia sp. CCS1] Length = 410 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 140/436 (32%), Positives = 214/436 (49%), Gaps = 27/436 (6%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR + LL+ V+R+R L + + + + LR L +D Sbjct: 1 MKARPAALILLNAVLRERQILGQV---------DVPATGAEAARANRLALSVLRNLDAVD 51 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + + LLR+ ++L + VV V AK R + +V Sbjct: 52 AVIKPYTTRKP---QIGVHNLLRLGAVELLVNGEDAHGVVSDIVGIAKTQPHTRKASGMV 108 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N+ILR+++ E A +P W + L G + + AI A +DL Sbjct: 109 NAILRKIAVEG-AEAFAKAPPQRLPPWIDKALRKRIGADGIRAIEQAQAQVPPMDL---T 164 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + NA +LPTG +RL P+ + +LPG+++G +WVQDA+A++PV+L G + S Sbjct: 165 PRDDGFMLENAEVLPTGSLRLNNHPQ-VSALPGYSDGAFWVQDAAAALPVKLLGDVRGKS 223 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 VLDLCAAPGGKT QL +GA+VTALD+S RL ++ NL R L A + E Sbjct: 224 VLDLCAAPGGKTMQLAAAGAEVTALDISGPRLRRVEENLARTGLSATLVTEDAFQHSGS- 282 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 +DA+L+DAPCS+TGTIRRHPD+ + +D ++ Q +L+ ++ +KPGG +V+ Sbjct: 283 --YDAILLDAPCSATGTIRRHPDLPFVKDGREVEPLTRLQMQLIDHALTLLKPGGTLVYC 340 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL + E ++ L+ L + + A S EG +R+ P + Sbjct: 341 TCSLLPVEGEFQIKAALKRHDG---LSIIPADPVALGGDAEWASAEGGLRLWPFYWAE-- 395 Query: 425 GVSSGMDGFFAVALRR 440 GMDGF+ AL R Sbjct: 396 --RGGMDGFYMAALTR 409 >gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris PB013-T2-3] gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris PB013-T2-3] Length = 449 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 189/466 (40%), Gaps = 44/466 (9%) Query: 1 MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M M AR V+ L + R+ L+ L+ D+ L IV TL+ Sbjct: 2 MTKQDMTAREVALTALDRIRRQGAYSNLQLNQLLSKHH---LNDSDRRLATRIVYGTLQH 58 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN- 117 ++ L + R ++ LL ++ Q YL V D+AV D +E AK Sbjct: 59 QLTLEYWLQPFVKG--KRLDSWVETLLLTALYQYHYLERVPDWAVTDETIEIAKHWGNPG 116 Query: 118 --RHFAKLVNSILRRVSREKIELLQRI---AGISIIPEWFKERLENFYGKERVLAISDAC 172 + +++++LRR + ++ A IP W L YG+ + I A Sbjct: 117 IRKFVTGVLHAVLRRGFPDFDQVQDPEERLAVQYSIPRWLVHELGAQYGRAQAAQILKAV 176 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 P + + V D+ T L+A + L I+ P FA G Sbjct: 177 NDPARLVVRVNTAVTDLATVKAGLHAAGIEYQESRVVPNALVITKGEILDSPLFATGQIT 236 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279 VQD SA + V VLD CAAPGGKT Q +G +V ALD+ + + + Sbjct: 237 VQDESAMLAVDSMAVQPGDRVLDACAAPGGKTVQIAERLDPTAGGRVDALDIHQHKARLI 296 Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N R+ + +DA + FD +LVDAPCS G +RR P++ +T+ Sbjct: 297 QKNARRMQVDDRVVAHTLDARRVDEEFADESFDKILVDAPCSGIGLLRRKPEIRYTKKLA 356 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D Q +L VK GGI+ +S C++ +Q++E+ VQ+ L + L S Sbjct: 357 DSQNLHQIQGSILNAVAPKVKKGGIITYSTCTILQQENEQTVQEFLAAHSDFRLLTTKTS 416 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K L+ I P G DGFF +L+R+ Sbjct: 417 RNLKDDRALATLT------ILPSDY--------GSDGFFISSLQRI 448 >gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9916] gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9916] Length = 456 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 113/464 (24%), Positives = 189/464 (40%), Gaps = 61/464 (13%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R ++ +L V L+ + LS D+ LV + +R + Sbjct: 22 GVLPRRLAWEVLEAV-AAGAYADVALERALR---GQQLSGPDRGLVTELAYGAIRQRRWL 77 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 D LD + ++ L+ LL V + Q+L + + A V+ +VE AKR NR A Sbjct: 78 DGWLDRLGKVPARKQPPRLRWLLHVGLYQLLCMERIPAAAAVNTSVELAKRHGLNR-LAP 136 Query: 123 LVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +VN +LR + R+A +P+WF ++L+ + G E+ ++ AC Sbjct: 137 VVNGLLRGALRAQEAGEQLTLPDDPALRLALQQSLPDWFCQQLQQWCGPEQAERVAQACN 196 Query: 174 SPLYIDLTVKFDI----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V E + A+ G+++ + PG+ +G W Sbjct: 197 QVPSLDLRVNRLRSTPEAVKAALEDAGLTVVAIPECPDGLQVLSHGGDLRQWPGYDDGHW 256 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD +A L VLD CAAPGGK L + +V A+D S RL+++ Sbjct: 257 CVQDRAAQWVAPLLAPQPGDRVLDACAAPGGKATHLAELMGDQGEVWAIDRSAGRLQRVA 316 Query: 281 CNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL + DA D K F +L+DAPCS GT+ RH D W Sbjct: 317 ANAARLGTNCLQAMAADAADLLTLKPEWKGSFQRILLDAPCSGLGTLARHADARWRVSAK 376 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + + Q +LL + + PGG +V++ C++ ++ E ++ L++ P Sbjct: 377 SVAELVPLQARLLEGMLPLLSPGGSLVYATCTIHPAENTERIEAFLQAHP---------- 426 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ E+ G DGF+A ++ Sbjct: 427 ------------------QLSLQHQEQRWPDPEGGDGFYAAVIK 452 >gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR] gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR] Length = 442 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 118/446 (26%), Positives = 194/446 (43%), Gaps = 47/446 (10%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 + V+ K SL+ L G LS D+ L AI LR LP ++ ++ L Sbjct: 24 IFHVLEKGESLSAALPHATGK-----LSDADKRLASAISYGVLRVLPSLNKLVGAKLDKP 78 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR---- 130 L K L LL V Q+ L + D+A V VE A R R+ LVN ILR+ Sbjct: 79 LKGKLKVLHYLLLVGAYQLYCLRIKDHAAVSATVEAA-RILGKRNHKGLVNGILRQLLRE 137 Query: 131 --VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTV-KFDI 186 + E + + + P W E ++ + ++ + + P+++ + F+ Sbjct: 138 APATDESQQRELPVDAMQNHPRWLFEAIQADHPQQASDILIENNAHPPMWLRVNRRFFNR 197 Query: 187 ETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + + +L + G L P + LPGF G VQD SA + Sbjct: 198 DDYLRQLEDSGIAAEGDTLAGDAIRLHSPVPVERLPGFDRGHASVQDRSAQLAADYLNVK 257 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + VLD CAAPGGK V A+D+ +RLE++ NL+R L A Sbjct: 258 ASHRVLDCCAAPGGKLLHLLERNDFEQPVQAIDIDAKRLERVDENLERAGLSAVVHCADV 317 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + D+ + FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q ++L + Sbjct: 318 AETEDWWDGEQFDRILLDAPCSATGVIRRHPDIKWLRRAEDINELAQLQSQILNSLWPLL 377 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG ++++ CS+ ++++ ++ L+ L+P++ + +++ Sbjct: 378 KNGGELLYATCSILSKENQTQIESFLKQ-QSSASLIPIDE-------------KQKTLQL 423 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P DGFF L+++ Sbjct: 424 LPG--------ERNGDGFFYARLKKV 441 >gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium chlorochromatii CaD3] gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium chlorochromatii CaD3] Length = 429 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 181/460 (39%), Gaps = 52/460 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR V+ +L + + LL S L + ++ L +VN LR+ Sbjct: 1 MST---AREVALQVLQALEKSSERSDALLHKHLEAS---GLERVERALATELVNGVLRWQ 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ++D+ + L L+ +LR+ Q+L+L + +A V+ V+ A++ K R Sbjct: 55 LQLDSRISLAYHHKLEAAAPVLRNILRLGAYQLLFLTKIPRWAAVNECVKLARKYKGER- 113 Query: 120 FAKLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISD 170 AKLVN +LR + + ++A P W ER YG+ + + Sbjct: 114 MAKLVNGVLRHLDGGNEAFEKLLQGRSQAEQLALQFSHPAWLIERWLATYGELKTRQLLH 173 Query: 171 ACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + A M P E + EGV V Sbjct: 174 YNNQAPMMGFRINRLKADAKDFFDNPTFAAAMEPCELPYCFLSREFSLFETALQEGVLSV 233 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + ++ L V+DLCAAPGGK + + + +V A+D +++L KL + Sbjct: 234 QNPTQALAPLLLNPAPQSVVIDLCAAPGGKAMFMAELMHNQGEVIAVDQYEQKLRKLESH 293 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L + DA P DAVL+DAPCS TG I R ++ W + + Sbjct: 294 AQALGLTIIRTVAGDARSVAPNLQADAVLLDAPCSGTGVIGRRAELRWKVTPAMVAELQG 353 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL + +KP G +V++ CS++ +++ E V L+ P V Sbjct: 354 LQAELLDHAATLLKPQGRLVYATCSIEPEENGEQVAAFLQRHPNFVAE------------ 401 Query: 403 MAMALSPEGWIRITPD-MLEKIDGVSSGMDGFFAVALRRL 441 P + G G DG F LR+L Sbjct: 402 --------------PHAQHMTLPGDRYGYDGGFCQCLRKL 427 >gi|315222002|ref|ZP_07863913.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus F0211] gi|315188968|gb|EFU22672.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus F0211] Length = 440 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 121/449 (26%), Positives = 192/449 (42%), Gaps = 34/449 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ + LS D+ LV IV T+ ++ Sbjct: 11 ARQTALAVLEAVFSEGAYSNIALNQALLEVP---LSSADKGLVTEIVYGTVARKITLEWY 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L V+ + L LL +S+ QILYLD + +AVV+ AVE AK R K + FA V Sbjct: 68 LSHVIE-DRDKLDSWLYFLLLMSLYQILYLDKIPAHAVVNEAVELAKVRKKGSEKFANAV 126 Query: 125 NSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 L R +R + +P W + L YG++R LAI ++ + + Sbjct: 127 LRGLLRDGVADIGSIKRKNKRYSIQYSLPVWLVKVLIEEYGEKRALAIFESLFLRNKASV 186 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + E L A L + F EG +QD S+ + Sbjct: 187 RVGDLSRKEELKQVLQAEDSLLAPSALVKNHGHFAGHALFEEGAITIQDESSQLVAPSLE 246 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 + VLD C+APGGKT + ++ +VTALD+ + +L ++ N RL + + Sbjct: 247 LRGDEKVLDACSAPGGKTMHIASYLTTGQVTALDLYEHKLALIKENAQRLGVADKVITKK 306 Query: 296 MDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA FD +LVDAPCS G IRR PD+ + ++ D Q ++L Sbjct: 307 LDARKVFETFGADAFDKILVDAPCSGIGLIRRKPDIKYNKENADFASLQKIQLEILDSVC 366 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ Q++ +VV++ L + P K + +G Sbjct: 367 QSLRKGGIITYSTCTIVSQENFQVVEQFLTAHPDF--------KQVKLEHNRQDILKDGC 418 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I ITP++ G DGFF +R+ Sbjct: 419 ILITPELY--------GSDGFFISQFKRI 439 >gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 438 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 189/465 (40%), Gaps = 60/465 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ +RL + +L V + +D + LS D+ L + +R Sbjct: 3 KKGLLSRLAAWEILQTV-GRGAYSDIAIDHSFRKY---SLSIADRALATELACGAIRQRL 58 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D +D + S ++ L+ LL V + QI Y+D + A V+ VE AK+ + Sbjct: 59 VLDCWIDCLAKVSAEKQPPLLRWLLHVGLYQIFYMDRIPVSAAVNTTVELAKKKNL-KSL 117 Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 A +VN+ILR + IE R++ IP W L + G++ I+ A Sbjct: 118 APVVNAILREAIRARDLGKELPGLIEPQDRLSLKHSIPTWLAYELIEWKGEKGAEIIAKA 177 Query: 172 CISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 IDL V + + + G+ + + PG+ +G Sbjct: 178 FNQAPAIDLRVNSKRSSVKSLRQKFQDSGIESKLIETCPYGLTVTSGAGDLRQWPGYEQG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQD SA V L + VLD C+APGGKT L + ++ A+D S +RL+K Sbjct: 238 EWSVQDRSAQWVVPLLEPRSGEVVLDACSAPGGKTTHLAELMNDIGEIWAVDRSPKRLQK 297 Query: 279 LRCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + + DA + K F+ +L+D PCS GT+ R+PD W Sbjct: 298 VSLNAARLGHHCIKFLSADATNLIELKPSWKGYFNKILLDVPCSGLGTLARNPDARWRMS 357 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 I Q LL + +KPGG +V+S C++ ++ ++K + Sbjct: 358 PSQIEGLIQLQFNLLEGILPLLKPGGRIVYSTCTIHPDENFRQIEKFVSMH--------- 408 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L+ E +I P + G DGF+A + Sbjct: 409 -----------QPLNLERQKQIWPGD-------AQGGDGFYAAII 435 >gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 435 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 106/460 (23%), Positives = 194/460 (42%), Gaps = 47/460 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + + V+ ++ + +S D+ L +V T++ Sbjct: 2 MNT---VRGYAFDTIQQVLNDGAYSNLKINEVLSSN---EISTVDRNLYTELVYGTIKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++QLL +S+ Q +YLD V D+A+++ AV+ AK + H Sbjct: 56 YTLDYILKPFVKTKIKG---WMRQLLWMSIYQYVYLDKVPDHAIINEAVDIAK-HRGGYH 111 Query: 120 FAKLVNSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR + R ++ RIA IP+W + +G E AI+ + Sbjct: 112 NGNVVNGILRSIMRSELPQFDEIKDDKKRIAIKYSIPKWIVDHWVTHHGIETTEAIAQSF 171 Query: 173 ISPLYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + V ++ +L L + I++ F +G Sbjct: 172 LEPVKTTVRVNISRGSVDSIVAELEKEGFKVEKDEILPFCLHITGQPIINSRAFKDGYVS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 VQD S+ + + N VLD C+APGGK + V A D+ +++ + Sbjct: 232 VQDKSSMMVAHIMNLGRNDVVLDACSAPGGKACHMAEILSPEGHVDATDIHTHKIDLINF 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA + + +D +LVDAPCS G +R P++ +T+ + I Sbjct: 292 NIKKLKLDNISAFQHDATE-PYTRTYDKILVDAPCSGLGVLRHKPEIKYTQSKESIQSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L +KPGG +V+S C++++ ++E V+ L+ + E P Sbjct: 351 ELQLQILENIKRNIKPGGTIVYSTCTIEQMENENVIYTFLKQN-EEFEFEPFQHPVTGK- 408 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P + DGFF +RR Sbjct: 409 -------EVNTLQILPQDFDS--------DGFFITQIRRK 433 >gi|114769580|ref|ZP_01447190.1| ribosomal RNA small subunit methyltransferase B, putative [alpha proteobacterium HTCC2255] gi|114549285|gb|EAU52167.1| ribosomal RNA small subunit methyltransferase B, putative [alpha proteobacterium HTCC2255] gi|297183946|gb|ADI20067.1| hypothetical protein [uncultured alpha proteobacterium EB080_L11F12] Length = 430 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 150/438 (34%), Positives = 237/438 (54%), Gaps = 15/438 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR + LL V+ +R L +++ DS L ++ +++ TLR L Sbjct: 3 KPGLFAREAAVRLLHAVLLERRLLIDIVN--GEDSLLIDLEPSERARAQSLAMTTLRNLG 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ID VL L + ++L +LRVS A++L +A +A VD AV AKR + H Sbjct: 61 PIDFVLQKYLTK---QTPFALLNILRVSAAEMLVDGIAAHAAVDSAVTMAKRRHKTAHLK 117 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 L N++LR+V+ E +++ + + +P+ F+ ++ KE + +I + + +DL+ Sbjct: 118 DLANAVLRKVASEGMDIFEGLEPQ-ELPKAFRSQMAKIVTKEEMTSIERSHQAGAPVDLS 176 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 K + A N+ + ++ + I + GF +G WWVQD +ASIP + FG L Sbjct: 177 FKDIKKANAFIENSNGIMMPNGSVRLKRAGQITEMNGFLDGDWWVQDLAASIPAKCFGDL 236 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + VLDLCAAPGGKT QL GA VTALD+S +RLE+++ NL+R L A I DA Sbjct: 237 SGKKVLDLCAAPGGKTMQLASMGATVTALDISSKRLERVKQNLERTKLKANCI-AADALK 295 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P + FDA+L+DAPCS++GTIRRHPD+ + ++ D+ + QR LLL+ +++ PGGI Sbjct: 296 WKPVERFDAILLDAPCSASGTIRRHPDLPFAKENFDLGELLKLQRALLLKASNWLVPGGI 355 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++S CS+ + E VQ + + + L+P + +G IR+ PD Sbjct: 356 LIYSTCSIFSAEGEGQVQWLAKQNND---LIPQKIDPKLIGLSDYMANKDGQIRLRPDFF 412 Query: 421 EKIDGVSSGMDGFFAVAL 438 + GMDGFF Sbjct: 413 ADL----GGMDGFFVAKF 426 >gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium lipophiloflavum DSM 44291] gi|227078665|gb|EEI16628.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium lipophiloflavum DSM 44291] Length = 480 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 103/460 (22%), Positives = 168/460 (36%), Gaps = 40/460 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G +AR + ++ V +L + R ++ RD + TLR + Sbjct: 39 GDSAREAAFEVVHRVATDDAYANLVLPNLLRE---RSITGRDAAFATELAYGTLRAQGVL 95 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 DAV+ L + LR+ Q+LY+ V D+A VD +V + + Sbjct: 96 DAVIARCSSRELGDIAPEVLAALRLGAYQLLYMRVDDHAAVDTSVRLVEAAGAGK-AKGF 154 Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKE----RLENFYGKERVLAIS 169 N+ILR +SR + A + PEW L + + A Sbjct: 155 ANAILRTISRTPAQQWLDELTPNDPLAAVAFRTSHPEWIARSFATALGESGAEGELEAAL 214 Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 A + L + A + +L +G+ VQ Sbjct: 215 AADSQRPVVHLVARPGEISAAELAAITGGDEGAYSPYAVYLHEGDPGALEPVRDGLAGVQ 274 Query: 227 DASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRC 281 D + + + + + LDLCA PGGK A L +G + +D + + Sbjct: 275 DEGSQLIARALAEVDVADDAGRWLDLCAGPGGKAALLGSLAGIEGAHVDAVEISEHRAEL 334 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + + D D + +D VLVDAPCS G +RR P+ W + +I Sbjct: 335 IRKIVGGLPVSVTVADGRDPGLQPGYDRVLVDAPCSGLGALRRRPEARWKKQESEIGALT 394 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL ++ VKPGG+VV+S CS D +++ VV VL E + ++ Sbjct: 395 RLQSELLESALTLVKPGGVVVYSTCSPDVRETRGVVDAVLAE--GGAEELDASTWLPPME 452 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A S +++ P G D F LR+ Sbjct: 453 NTGEAKS----VQMWPH--------RHGTDAMFFAVLRKK 480 >gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC 27560] gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC 27560] Length = 448 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 181/457 (39%), Gaps = 40/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N R + +L V K L + L + + + + TL ID Sbjct: 10 VNLRNIVLEMLLQV-NKGEKSHVALKSTLDKNV--SLDKHQRSFITRLFQGTLERRIEID 66 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + K ++++LR+ V QI Y+D V AV + V+ A++ ++ R+ Sbjct: 67 FIINQFSKTPVNKMKPVIREILRMGVYQIKYMDNVPVSAVCNEGVKLAEK-RKFRNLKGF 125 Query: 124 VNSILRRVSREKIELLQRIAGI------SIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR ++R ++ +P+W E+ YG + + + P Sbjct: 126 VNGVLRNIARNIEKIEYPKEQKERLSVIYSVPKWIIEKWTKEYGISKTEEMLEGLYKPKA 185 Query: 178 IDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + T + ++ + + +L F G+ VQD Sbjct: 186 TSVRCNTSRATVEEIVKSLEYQGTTVEKSKLYDKALKISGYDKLENLDVFKAGMITVQDE 245 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + ++D+CAAPGGK+ + V A D+++ ++ + N+ R Sbjct: 246 SSMMVGIAANPKEKDYIIDVCAAPGGKSLHVSELLNGTGTVEARDLTEYKIGLIEENVAR 305 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + DA + + D V+ D PCS G I D+ + + I + Sbjct: 306 VGNENIITKVSDATVLDKEAIEKADIVIADLPCSGLGVIGNKSDIKYNVTQNQIDELVEL 365 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QRK+L Q +VK GG +++S C++++Q+++ V+ + + +P I Sbjct: 366 QRKILKQVSKYVKQGGKLLYSTCTVNRQENDSNVKWIQDN-------LPFKLQSLNGIVP 418 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G ++I P GMDGFF R Sbjct: 419 EQLKCEKGCLQIYPGQY--------GMDGFFVSLFIR 447 >gi|191638611|ref|YP_001987777.1| RRNA methylase (Putative) [Lactobacillus casei BL23] gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23] gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus casei LC2W] gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus casei BD-II] Length = 446 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 187/465 (40%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ LS V + LD L+ RD L+ IV ++ Sbjct: 1 MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + + ++ LL ++V Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDFYLAPFIKG--RKLDNWIRCLLDIAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR R IA S P W E+L G+ + AI + Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + L V T A L ++ I L + F +G + Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L +DA P FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFPANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D Q +L +K GG + +S C++ K+++++VV + L + P ++ Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A A +++ PD + DGFF +L R Sbjct: 414 KPLHKAHNAPA------LQLFPDDYD--------TDGFFIASLIR 444 >gi|323127837|gb|ADX25134.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 440 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 36/450 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L + + L+ + + A LS +D+ L+ IV T+ ++ L Sbjct: 10 RGKALLTLEHIFDQGAYTNIALNQQLSNKA---LSTKDRALLTEIVYGTVSRKISLEWYL 66 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + LL +S+ Q++YLD +A+V+ AV AK + K VN+ Sbjct: 67 AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 125 Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177 ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 126 ILRQFTSHPLPDMGTIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 185 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 I +T +E A L+A L + + F G +QD S+ + Sbjct: 186 IRVTDPLKLEKIAEDLDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTL 245 Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 246 NIDGDEIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIETR 305 Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 306 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 365 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 ++ GGI+ +S C++ +++ +V++ L+S P N K + +G Sbjct: 366 CQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKDG 417 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ ITP+ + DGFF +RR+ Sbjct: 418 YLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|251783087|ref|YP_002997390.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391717|dbj|BAH82176.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 452 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 36/450 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L + + L+ + + A LS +D+ L+ IV T+ ++ L Sbjct: 22 RGKALLTLEHIFDQGAYTNIALNQQLSNKA---LSTKDRALLTEIVYGTVSRKISLEWYL 78 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + LL +S+ Q++YLD +A+V+ AV AK + K VN+ Sbjct: 79 AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 137 Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177 ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 138 ILRQFTSHPLPDMGTIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 197 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 I +T +E A L+A L + + F G +QD S+ + Sbjct: 198 IRVTDPLKLEKIAEDLDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTL 257 Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 258 NIDGDEIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIETR 317 Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 318 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 377 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 ++ GGI+ +S C++ +++ +V++ L+S P N K + +G Sbjct: 378 CQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKDG 429 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ ITP+ + DGFF +RR+ Sbjct: 430 YLIITPEQYQ--------TDGFFIGQVRRV 451 >gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 462 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 114/488 (23%), Positives = 192/488 (39%), Gaps = 83/488 (17%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+ RL S +L V K + L++ +S+RD+ L+ +VN R +D Sbjct: 1 MDVRLESIRILRKVDEKDVLAQELVEE---RCQQTNVSRRDKHLLLELVNGITRHRLSLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L F + + L LR+ + Q+++LD + A V+ +VE K A+ Sbjct: 58 TILSFFSKIPPQKIEPWLLYALRLGIYQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARF 117 Query: 124 VNSILRRVSREKIELLQ------------------------------------RIAGISI 147 N+ILR V R IA Sbjct: 118 ANAILRAVDRTIKNKYSVNHKNVNQQKLLYKKENVWCEFSEPIFPDPGENLTSYIAKNYS 177 Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI------ETWAHKLNAVMLPTG 201 PEW +R YG ++ + I A + L + + + + + Sbjct: 178 HPEWLIKRWLTRYGIDKTIEICKANNHIPTLSLRINHNKTSINEFASLLEQNGILARVID 237 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTA 257 L + +PGF+ G++ VQD ++ +++LD+CAAPGGKT Sbjct: 238 NNALIINKSVVSDIPGFSNGLFSVQDITSMKVGTFLIAETPTAGAITLLDMCAAPGGKTT 297 Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLV 312 + I + + ALD+S +RL +++ N RL + II D + FD VL Sbjct: 298 HIAEIIQNKGSIYALDISLKRLHRVKENCQRLGIKNITIICCDASEGKIPFRGKFDRVLA 357 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS+TG + R + W +I + A Q LL G + +K GI+V+S CS++ ++ Sbjct: 358 DVPCSNTGVLSRRVEARWRITEKNIKQLAALQYSLLKTGSTMLKQDGILVYSTCSIEPEE 417 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 ++EVVQK L++ P + D + + DG Sbjct: 418 NQEVVQKFLKNEP----------------------------QFYLDKEDCYSPEINKGDG 449 Query: 433 FFAVALRR 440 + +R+ Sbjct: 450 GYMARIRK 457 >gi|324994072|gb|EGC25986.1| RNA methyltransferase Sun [Streptococcus sanguinis SK678] gi|327459278|gb|EGF05624.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1] gi|327472704|gb|EGF18131.1| RNA methyltransferase Sun [Streptococcus sanguinis SK408] gi|327490496|gb|EGF22277.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1058] Length = 438 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 122/453 (26%), Positives = 190/453 (41%), Gaps = 38/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +L V + L+ S LSQ D+ LV +V T+ ++ Sbjct: 8 ARWQVLEILEEVFEEGAYSNIALNRALNQSL---LSQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + L LL +S+ Q+LYLD + +A V AVE AK K R K VN Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHATVHEAVEIAKIRK--RGSEKFVN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L +G+ER LAI + S Sbjct: 122 ALLRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T L A L + F G +QD S+ + Sbjct: 182 SIRVTDMSRKAELRQLLGAENSLLSPSALVKRQGHFAGHQLFERGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD C+APGGKT + ++ +TALD+ +LE + N RL L Sbjct: 242 LAIEGEEQILDACSAPGGKTVHMASYLTSGHITALDLYDHKLELVEENAKRLGLADKITT 301 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 302 KKLDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + + Sbjct: 362 VCQSLRKGGIIAYSTCTIMAKENFEVVKKFLASHPNFEQVLLDHE--------RKDIVKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I ITP++ E DGFF R++ + Sbjct: 414 GCILITPELYES--------DGFFISQFRKISE 438 >gi|149011398|ref|ZP_01832645.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75] gi|147764388|gb|EDK71319.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75] Length = 438 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 199/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S L D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDWVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Pseudoalteromonas tunicata D2] gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Pseudoalteromonas tunicata D2] Length = 429 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 114/451 (25%), Positives = 201/451 (44%), Gaps = 42/451 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R +++ L V+ + +SL +L A + + L++ + LR LP ++ Sbjct: 3 NVRALAAETLYQVVDQGLSLNQVLPAAAAKVAVKEKA-----LLQQLCYGVLRQLPSLEH 57 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L L K+ Q L+ V + Q+ ++ +A V V A + + LVN Sbjct: 58 YCRTLLTKPLKGKQRVFQFLVYVGIYQLQHMRTPAHAAVAETVN-ALQALQAPGLKGLVN 116 Query: 126 SILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDL 180 ++LR R++ E Q + P WF + ++ Y K + + ++ +P+++ + Sbjct: 117 AVLRNFQRQQAELEAAANQVEVCLYNHPGWFIKAVQEAYPEKWQTILAANQQQAPMWLRI 176 Query: 181 TV-KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 ++ + + L + L E P + SLPGFAEG VQD +A I Sbjct: 177 NQSQYSTDQYLALLTEANIVARKVDGFCDAVLLEKPCDVFSLPGFAEGACSVQDGAAQIA 236 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290 +L +LD CAAPGGKT ++ VTALD + RL +++ NL R+ L A Sbjct: 237 ARLMAPQAGERILDACAAPGGKTCHILELADNLAVTALDCDETRLARVQENLSRIGLQAQ 296 Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + + K+ FD +L+D PCS+TG IRRHPD+ W R DI + A Q +L Sbjct: 297 LLCADAANPDTWWDKETFDKILLDVPCSATGVIRRHPDIKWLRRAADIEQLALLQSSILD 356 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + +K GG +V++ CS+ Q++++ V+ L + + + Sbjct: 357 KIWPLLKAGGTLVYATCSVLPQENKDQVKAFLARTDDAI----------HQPLHDLDTHE 406 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P++ DGF+ + + Sbjct: 407 QPGWQFLPEL----------TDGFYYAKITK 427 >gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 438 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 201/458 (43%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ NAR V+ L V+ + L+ + L + L +V T+++ Sbjct: 1 MKT--NARTVALATLMKVINQGSYSNISLNHALKAAK---LPDEESRLATNLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + L ++ LL +S QI +LD V + AV+D A + AK + Sbjct: 56 LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKS 113 Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173 +LVN ILR + R L ++ A +P W + +GK R I + Sbjct: 114 SGYRLVNGILRSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226 S I ++ D + L+ L ++ F +G VQ Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ + F N LD C+APGGKT Q + +VTALD+ +++L ++ N Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + +DA Y + FD +L+DAPCS G +RR P++ +T+ +DI Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +K GG +V+S CS+ +++EE V+K L + P K Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + A +P+G ++I PD DGFF Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434 >gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 438 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 201/458 (43%), Gaps = 44/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ NAR V+ L V+ + L+ + L + L +V T+++ Sbjct: 1 MKT--NARTVALATLMKVINQGSYSNISLNHALKAAK---LPDEESRLATNLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + L ++ LL +S QI +LD V + AV+D A + AK + Sbjct: 56 LYLEYQLKDLVKARLRE--PYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAKVYGRPKS 113 Query: 120 FA-KLVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACI 173 +LVN ILR + R L ++ A +P W + +GK R I + Sbjct: 114 SGYRLVNGILRSLLRRGEVLPEKDAPDYLSVKCSMPLWLSDYFVANWGKSRAEKIMASFN 173 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQ 226 S I ++ D + L+ L ++ F +G VQ Sbjct: 174 SKAKNEIRISALADEKRVVRDLDRAHFAPQESPLASRSYALSRGGIVMTDFFKDGEVTVQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ + F N LD C+APGGKT Q + +VTALD+ +++L ++ N Sbjct: 234 DEAASLVAEAFDFKGNEQALDACSAPGGKTIQIAEQLPDGQVTALDIHEKKLRLVKENAA 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + +DA Y + FD +L+DAPCS G +RR P++ +T+ +DI Sbjct: 294 RMRVADRVKVKALDARKAREYFSGQEFDKILIDAPCSGLGLLRRKPEIRYTKTAEDISHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +K GG +V+S CS+ +++EE V+K L + P K Sbjct: 354 AEIQLDILNEVSGLLKKGGELVYSTCSISVEENEENVRKFLAAHPDFA---------LKP 404 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + A +P+G ++I PD DGFF Sbjct: 405 FETAKISAPKGMLKILPDSY--------NSDGFFIAKF 434 >gi|297184252|gb|ADI20370.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha proteobacterium EB080_L27A02] Length = 430 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 150/438 (34%), Positives = 237/438 (54%), Gaps = 15/438 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR + LL V+ +R L +++ DS L ++ +++ TLR L Sbjct: 3 KPGLFAREAAVRLLHAVLLERRLLIDIVN--GEDSLLIDLEPSERARAQSLAMTTLRNLG 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ID VL L + ++L +LRVS A++L +A +A VD AV AKR + H Sbjct: 61 PIDFVLQKYLTK---QTPFALLNILRVSAAEMLVDGIAAHAAVDSAVTMAKRRHKTAHLK 117 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 L N++LR+V+ E +E+ + + +P+ F+ ++ KE + +I + + +DL+ Sbjct: 118 DLANAVLRKVASEGMEIFEGLEPQ-ELPKAFRSQMAKIVTKEEMTSIERSHQAGAPVDLS 176 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 K + + N+ + ++ + I + GF +G WWVQD +ASIP + FG L Sbjct: 177 FKDIKKANSFIENSNGIMMPNGSVRLKRAGQITEMNGFLDGDWWVQDLAASIPAKCFGDL 236 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + VLDLCAAPGGKT QL GA VTALD+S +RLE+++ NL+R L A I DA Sbjct: 237 SGKKVLDLCAAPGGKTMQLASMGATVTALDISSKRLERVKQNLERTKLKANCI-AADALK 295 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P + FDA+L+DAPCS++GTIRRHPD+ + ++ D+ + QR LLL+ +++ PGGI Sbjct: 296 WKPVECFDAILLDAPCSASGTIRRHPDLPFAKENFDLGELLKLQRALLLKASNWLVPGGI 355 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++S CS+ + E VQ + + + L+P + +G IR+ PD Sbjct: 356 LIYSTCSIFSAEGEGQVQWLAKQNND---LIPQKIDPKLIGLSDYMANKDGQIRLRPDFF 412 Query: 421 EKIDGVSSGMDGFFAVAL 438 + GMDGFF Sbjct: 413 ADL----GGMDGFFVAKF 426 >gi|111657689|ref|ZP_01408417.1| hypothetical protein SpneT_02001123 [Streptococcus pneumoniae TIGR4] gi|149002037|ref|ZP_01826991.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae SP14-BS69] gi|147759846|gb|EDK66836.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae SP14-BS69] Length = 438 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 199/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ S L D+ LV +V T+ ++ Sbjct: 8 ARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LLAADKGLVTELVYGTVARKLTLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + L LL +S Q+ YLD + D+AVV+ AVE AK + KLVN Sbjct: 65 LSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKGSEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR+ RE +R + +P W +L+ YG+ER AI ++ + Sbjct: 122 AVLRRILREGWPDIASIKRKNKRDSIAYSLPVWLVAKLKEEYGEERAKAIFESLLVRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T E L A L + FA+G +QD S+ + Sbjct: 182 SIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFADGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 242 LDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVEDRVQT 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q ++L Sbjct: 302 QKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQLEILGS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + GGI+ +S C++ +++ +VV+ L S P K + + Sbjct: 362 VCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECKDIMKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF R++ Sbjct: 414 GCILITPELY--------GSDGFFISQFRKI 436 >gi|53803078|ref|YP_115239.1| sun protein [Methylococcus capsulatus str. Bath] gi|53756839|gb|AAU91130.1| sun protein [Methylococcus capsulatus str. Bath] Length = 431 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 116/450 (25%), Positives = 187/450 (41%), Gaps = 39/450 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 +R +++ L V+ R SLT L RD+ V+++ LR +D Sbjct: 4 KSRTLAAAALHDVVVDRHSLTWALGKRLPSLP----DARDRAFVQSLCYGVLRAFETLDF 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA-KRDKENRHFAKLV 124 +L + + ++ L + + Q+ ++V +A V VE A ++ ++ Sbjct: 60 LLGRLATKPIR--DPEIRLLALIGLHQLRSMNVKPHAAVSETVEAAGRKSWAKPLLNAIL 117 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + LRR + LQ P W ++RL + E+ + P + L V Sbjct: 118 RNYLRRKEELESRALQDPESRDAHPAWLRDRLAADWP-EQWETLVQQNNLPPPMTLRVNP 176 Query: 185 ---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235 D + +L + R P + +LPGFAEG VQD +A + Sbjct: 177 LMNDRAGYLARLTEAGIAARPCRHSPWGLTLGSPVPVDALPGFAEGRVSVQDEAAQLAAP 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G VLDLCAAPGGKT + + A+D R ++R NL+R L A Sbjct: 237 LVGAEPGERVLDLCAAPGGKTLHMLELSRGDIEAVAVDSDAERCARIRENLERERLSAAV 296 Query: 293 I--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + FD +L+DAPCS+TG IRRHPD+ R D+ Q +L Sbjct: 297 VTGDARSPESWWDGRPFDRILLDAPCSATGVIRRHPDIKLLRQAVDLDTLNELQAAILTA 356 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +KPGGI+V++ CS+ + ++E + + L + EL + A + Sbjct: 357 AWPLLKPGGILVYATCSVIRAENEAQMSRFLEAHDDAAEL---------PLPAAWGIPLR 407 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I SGMDGF+ LR+ Sbjct: 408 HGRQIL--------TGESGMDGFYYALLRK 429 >gi|238916656|ref|YP_002930173.1| Sun protein [Eubacterium eligens ATCC 27750] gi|238872016|gb|ACR71726.1| Sun protein [Eubacterium eligens ATCC 27750] Length = 434 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 55/464 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R V +L + K L++ + ++ L + + + + T+ Sbjct: 1 MTDSVNLRAVVLDILMEINEKGEFSHLLINNAL--TKYQYLDKNKRAFISRLSLGTIENR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++D + + + K ++ + +SV QI+Y+D + D AV + AV+ A + + Sbjct: 59 IELDYIIDQYSKTPVRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATK-RGFTG 117 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR ++ Q ++ +P W + + G + I Sbjct: 118 LKGFVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIVKMWHSQLGIDMTEEILA 177 Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221 + T A + + + I L F +G Sbjct: 178 GFKQEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDG 237 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEK 278 ++ +QD S+ + G +V+D+CAAPGGK+ +S KV + DVS + Sbjct: 238 LYQIQDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGL 297 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N+ RL L ++ DA ++ D V+ D PCS G + R PD+ + D Sbjct: 298 IEENVLRLGLNNIEVQVKDALVMDESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDK 357 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 +V Q+ +L ++VK GGI+++S C+++ +++E + + Sbjct: 358 LVSLKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADWLCKEY------------ 405 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P + G DGFF LRR Sbjct: 406 ---------GFKKIEYRQILPGK-------NGGTDGFFVAKLRR 433 >gi|148554856|ref|YP_001262438.1| Fmu (Sun) domain-containing protein [Sphingomonas wittichii RW1] gi|148500046|gb|ABQ68300.1| Fmu (Sun) domain protein [Sphingomonas wittichii RW1] Length = 422 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 135/441 (30%), Positives = 202/441 (45%), Gaps = 26/441 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G AR + LL V+R+ + L +D D D+ AI LR Sbjct: 5 STGTPARRAALRLLDAVLRRGLPLEAAMDGACADLDRAD----DRGFAHAIAAEVLRRTA 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +DA++D LP + +LR+++AQ L L +A + + Sbjct: 61 DLDALIDGATERPLPA-DAKARMVLRIALAQALALGTPGHAAITTVLPLVD--------- 110 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 ++ V + + +P +R +GK+ A + P +DLT Sbjct: 111 GGPRKLVHAVFGAVMRDGAALPDPPHLPPAVADRWAASWGKDAAEAARASLGGPPPVDLT 170 Query: 182 VKFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +K D +T WA +L+ L G +R+ IV LPG+ EG WWVQD +A+IP +L G Sbjct: 171 LKPDADTADWAARLDGESLAPGHVRIAAG-RRIVDLPGYDEGAWWVQDIAAAIPARLLGA 229 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 LDLCAAPGGKT QL +G VTA+D+S+ R+ +L NL+R L AE I A Sbjct: 230 GEGRRALDLCAAPGGKTMQLAAAGWAVTAVDLSEARMARLAENLERTGLAAEARIAD-AA 288 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + +DAVL+DAPCS+TG RRHPDVL + ++A Q +L+ V PGG Sbjct: 289 AFAEGAPYDAVLLDAPCSATGIFRRHPDVLHRAGPRIVAEAAELQARLIDHAAGLVAPGG 348 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V++ CSL+ + E++ + P ++ + A G +R+ P Sbjct: 349 RLVYAVCSLEADEGEQIAKGFAARHPDWA----IDPVATDELPQGFAPDKVGRVRVRPGT 404 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L G DGFF RR Sbjct: 405 LAD----RGGADGFFVARFRR 421 >gi|329770489|ref|ZP_08261867.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325] gi|328836238|gb|EGF85907.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325] Length = 441 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 102/459 (22%), Positives = 190/459 (41%), Gaps = 39/459 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +NAR V L + L+ + + ++++ + IV TL+ Sbjct: 2 SNINARKVVYDTLYEIFYNEAYSNITLNKFFK---QNGIEEQNKRFISEIVYGTLKNKLF 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ +L R K ++ +L +S+ QI ++D ++AV+D AV+ +K+ N Sbjct: 59 LEHILKTYSKG---RVKPKVKVILLMSIYQIKFMDKTPNFAVIDEAVKLSKKIAGN-ITG 114 Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 K VN ILR + R ++ + P + L + YG + AI ++ + Sbjct: 115 KFVNGILRNIERNINDLALKYKNSEEQFCIENSCPFELYKILVDQYGNNKAKAIIESFNN 174 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP----GFAEGVWWVQDASA 230 + + T L + + E I L F EG + +QD ++ Sbjct: 175 KSENSIRYNPNKVTKKELLEILGNDAKESTICEDSIIIDKLDINSKYFKEGYYIIQDEAS 234 Query: 231 SIPVQLF--GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ +LD CAAPGGK+ + + + + D +L ++ N+ RL Sbjct: 235 ALVACSIGENIEEKYKILDTCAAPGGKSLHIASKYLNSTLISCDKYIHKLALIKDNIKRL 294 Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + D+ E D + FD V+ D PCS G I+ P++ + + + Q Sbjct: 295 GITNIDVKEQDATNINSSFINNFDIVVCDVPCSGIGVIKNKPEIKYKITNKYVEDISKLQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++VK GGI+++S C++DK+++ E +++ L + V I+ Sbjct: 355 YQILENSKNYVKKGGILMYSTCTIDKRENIENIERFLEENKNFV------LDKINLINSD 408 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + G + I PD DGFF LR+L + Sbjct: 409 VKAEENGVLEILPDDY--------NCDGFFIAKLRKLEE 439 >gi|103486536|ref|YP_616097.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256] gi|98976613|gb|ABF52764.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256] Length = 437 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 131/437 (29%), Positives = 208/437 (47%), Gaps = 26/437 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R + LL ++R+ L + +A + L D+ AI + LR++ Sbjct: 23 PGLAPRRAALRLLDAIVRRGDPLDVAM-----HAAAQGLVGADRAFAVAIASEALRWMTD 77 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 IDA++D LP + +LR+++AQ+L L +AVV A+ Sbjct: 78 IDALVDGATAQPLPD-DVKSRAVLRIALAQLLVLKSPGHAVVATALPLVD---------G 127 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ++ + + + + +P ER +G + A +++ P IDL+ Sbjct: 128 GPRRLVHAILSRAQKEKWELPARASLPPAAAERWTAQWGATMIEAAAESWSVPPPIDLSF 187 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 + + + R +++ ++PGFAEG WWVQD +AS+P +L G Sbjct: 188 AAEPA--PDEWPDAVALAPRHRRLPRGQAVEAMPGFAEGGWWVQDLAASLPARLLGAGAG 245 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 ++LDLCAAPGGKT QL + VTA+D S RRLE+LR NL R L A + + D + Sbjct: 246 RTILDLCAAPGGKTMQLAAANWAVTAVDSSARRLERLRANLTRTGLAATIV-QGDIRTWE 304 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P DAVL+DAPCS+TG RRHPDV+ + I + A Q LL + +VKPGG +V Sbjct: 305 PDAAADAVLLDAPCSATGIFRRHPDVIHRIEPRQIEEMATLQAGLLARAAKWVKPGGTLV 364 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CSL++ + E+ V L + +++A + + G +R P + Sbjct: 365 YATCSLERAEGEDQVAAFLDAHRGWA----IDAARPDELATGITPDINGCVRTLPGQIAD 420 Query: 423 IDGVSSGMDGFFAVALR 439 G+DGFF LR Sbjct: 421 A----GGLDGFFIARLR 433 >gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 60-B] gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus iners UPII 60-B] Length = 437 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 121/460 (26%), Positives = 206/460 (44%), Gaps = 45/460 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVQTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKTKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLD 284 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ +++L ++ L Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQKKLNLVKQTLT 293 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RLH + I++ +Y + FD +LVDAPCS G IRR P+V + + +D+ Sbjct: 294 RLHQDQKLIMKALDARKVNEYFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 + Q +L + G +V+S C++ +++E+VV++ L + P L P Sbjct: 354 SEIQYNILDHVAGLLAENGELVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN--- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS I+I PD DGFF + Sbjct: 410 ------LSNCKMIKIFPDDY--------NSDGFFIAKFVK 435 >gi|160945218|ref|ZP_02092444.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii M21/2] gi|158442949|gb|EDP19954.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii M21/2] Length = 443 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 96/455 (21%), Positives = 180/455 (39%), Gaps = 40/455 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R V+ L + +LD E + L RD+ AI L +D Sbjct: 4 NPRAVAVAALVRQEQNG-FSNLVLDAELKR---QKLEGRDKAFASAIFYTVLEHRGTLDY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L+ L L + ++++LR ++AQ Y+ V A V+ AV+ + K++ + LVN Sbjct: 60 ILEQFLPKGLAKLDAPVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKKS-SASGLVN 118 Query: 126 SILRRVSREKIELLQRIAGISII-----PEWFKERLENFYGKERVLAISDACISPLYIDL 180 ++LR+ ++ I + + + + L I L Sbjct: 119 AVLRKACGYDLDAAVFTGEIQRLMVLGSAGLDVAKFLHKNYPDEALGILTYQADGGLTSL 178 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASA 230 ++ A +L A++ G +++ S F +G + V+ ++ Sbjct: 179 RANP-LKASAAQLCALLTEQGAAEVRQGIVPGSVLARFAGSPADNELFRQGYYHVEGQAS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + G +VLDLCAAPGGKT + + ++ + D ++ R+ +R +DR+ Sbjct: 238 QLAALCVGAAPGETVLDLCAAPGGKTILLAEQMQGTGELYSCDAAENRVGLIRTAVDRMG 297 Query: 288 LYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDT-DDIVKSACFQR 345 + DA P D +L D PCS G + + PD+ + + + Q Sbjct: 298 FTGVHTLCNDATKPNPALPMADRILTDVPCSGLGILAKKPDLRYKKLEAARQAELLATQA 357 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L + +K GG +V+S C++D ++++ + L+ P P + M Sbjct: 358 AILDTAAALLKAGGRLVYSTCTIDPAENQKQIAAFLQRHPEFAVCAPDVP-----LPAGM 412 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G + + +GMDGFF L++ Sbjct: 413 TAGEYGCLSV---------PTRTGMDGFFLCVLQK 438 >gi|159045573|ref|YP_001534367.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter shibae DFL 12] gi|157913333|gb|ABV94766.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter shibae DFL 12] Length = 443 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 152/429 (35%), Positives = 227/429 (52%), Gaps = 21/429 (4%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +R+SL + F + ++ + + LR L D +L L Sbjct: 20 VLSERMSL--ADQTAHPKGPFAECAPAERARAQRLATGVLRHLRTCDQMLGPHLRMPPY- 76 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 ++ +LR+ ++ L A + VV AV+ A+ + LVN++LR+V+ Sbjct: 77 --PAIHNILRLGAYELCALGEAPHGVVHAAVDLARAEDPQSRAPGLVNAVLRKVADLGPA 134 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--WAHKLNA 195 L +P+ F++ L +G + V+ A + +DLT++ E WA +L A Sbjct: 135 LWAAAPPA-QLPKPFRKGLVKVWGNKTVIGFEAAHGAGAPLDLTLRDPSEAALWADRLGA 193 Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 V+LPTGG+RL + + LPG+AEG WWVQDA+AS+P + G + VLDLCAAPGGK Sbjct: 194 VVLPTGGLRLSDA-GQVSQLPGYAEGAWWVQDAAASLPARALGPVVGARVLDLCAAPGGK 252 Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 T QL +GA+VTALD+S R+ +LR NL R L AE +I D Y + FDA+L+DAP Sbjct: 253 TLQLAAAGAQVTALDISDARVARLRENLARTGLAAEVVI-ADGLTYAAETPFDAILLDAP 311 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS+TGTIRRHPD+ + RD D+ Q LL + + ++PGG +VF+ CSL + E+ Sbjct: 312 CSATGTIRRHPDLPFLRDLSDLSDLTALQAGLLDRAVGLLRPGGRLVFATCSLLPAEGED 371 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V L P + VPL+ + A L+ G +R+ PD + G+DGFF Sbjct: 372 QVAAALARHPGLAQ-VPLSDLAGSA---AEWLTDTGALRLRPDFWAE----RGGLDGFFI 423 Query: 436 VALRRLIQP 444 AL +P Sbjct: 424 AAL---AKP 429 >gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 448 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + L L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHSRDQYLELLKTAGLEASACMFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NL+RL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A D + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 EAELIAADARDTAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPAENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus minor NM305] gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus minor NM305] Length = 444 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 128/456 (28%), Positives = 208/456 (45%), Gaps = 41/456 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR V++H++ V+ + SL L+ A + +D LV+ I R L Sbjct: 9 MKKKQNARAVAAHIILQVLDQGKSLATLIPE-----AQSQVESKDLPLVQEIAFGVCRVL 63 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++ ++ ++ L K + LL V + Q+LY+ V +A VD V K K + F Sbjct: 64 PRLENIIKQLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVNATKSLKLD-SF 122 Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L N +LRR RE+ + ++ PEW +L+ Y R + ++ P++I Sbjct: 123 RALTNGVLRRFLREQETILAKVDKHWQTLHPEWLVNKLKKAYPNWREIVEANNQKPPMWI 182 Query: 179 DLTVKFDIET---------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + NA + S+ LP F +G VQDA Sbjct: 183 RVNTQHTNRADYIGLLGDLAKNTENATAYLPDCAIALDKAVSVNRLPHFEQGWATVQDAH 242 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A +L N +LD CAAPGGKT ++ + V ALD+ + RL +++ NL RL+ Sbjct: 243 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLN 302 Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 A I +FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q Sbjct: 303 QRATVICGDASQPEQWLDNGVMFDRILLDAPCSATGVIRRHPDIKWLRKEEDIAELAALQ 362 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K+L + +KP GI++++ CS+ +++ E +Q+ + ++P + Sbjct: 363 SKILNALWARLKPNGILLYATCSILPEENTEQIQQFIANTPNAKLVE------------- 409 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 M E + ++ + G DGFF L + Sbjct: 410 MDFHGEKML------EKQFFPQNHGGDGFFYAKLLK 439 >gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella elegans ATCC 700633] gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella elegans ATCC 700633] Length = 441 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 209/461 (45%), Gaps = 48/461 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R LL V + + T L + + +D+ L+ + T++ ID Sbjct: 3 KVRNAVVDLLVQVEQDQSYSTISLKKVIEQQKW---TAKDKGLLTELFYGTIQRKMTIDF 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + + ++QLLR+S+ Q+++LD + D+A + AV+ AK+ + ++ AK V Sbjct: 60 YLAPYIQKA-KKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKK-RGHQGIAKFV 117 Query: 125 NSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N +LR R + +R++ IP+W + + YG E+ IS++ ++ Sbjct: 118 NGVLRNFQRNDLRSFEEIKDTDERMSVQYSIPKWMYQLFKQQYGVEQAQQISESILTAPS 177 Query: 178 IDLTVKFD---IETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + ++ + E L + T L ++ F +G+ +QD + Sbjct: 178 VSVRIQPNHLNQEQVKQLLLEEGVQTRESTLSNRCLIVEEGNVFLSKTFEKGIITIQDEA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLD 284 +S+ Q+ VLD CAAPGGKT + G +V ALD+ + +L+K++ N Sbjct: 238 SSLVAQVANLKPTNKVLDTCAAPGGKTTHIASYLDPSKGGRVDALDLYEHKLKKIQENAK 297 Query: 285 RLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 RL + + + +A + P + FDAV VDAPCS G +RR PD+ +T+ D+ Sbjct: 298 RLQVDDCISMRILDARNAQEAYPTESFDAVFVDAPCSGLGLVRRKPDIKYTKSLKDLKSL 357 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +LL VK G +V+S C+++K ++ E+V + L +P E+ P+ K Sbjct: 358 EKIQLDILLSASKMVKSKGSLVYSTCTINKAENRELVNQFLEENP-AFEIEPIGKWIHKD 416 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I I P+ DGF+ L + Sbjct: 417 TE---------DITILPNDF--------NSDGFYICKLVKK 440 >gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956] gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956] Length = 448 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 195/466 (41%), Gaps = 44/466 (9%) Query: 1 MKSGMN----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M AR ++ L V L+ LS D+ LV A+V T Sbjct: 1 MTKKQAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGT 57 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L+ +D L + + + ++ LL +++ Q YLD V ++A D A+E AKR Sbjct: 58 LQHQRTLDYWLSPFIAG--KKVRPWVKTLLLMALFQYQYLDRVPNFAATDEAIEIAKRRG 115 Query: 116 EN---RHFAKLVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 R ++++ILR + + QR+A + +P+W + L YG + A++ Sbjct: 116 NPGVRRFVTGVLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALA 175 Query: 170 DACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEG 221 P I L V T + L +++ F G Sbjct: 176 KVINEPARISLRVNRAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKL 279 V +QD SA + V+ + VLD CAAPGGKT Q+ + +V ALD+ + ++ + Sbjct: 236 VVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAETLTDGEVYALDIHRHKVGLI 295 Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N R+ + ++DA + + FD +LVDAPCS G +RR P++ + + Sbjct: 296 EKNAQRMGVDDRVFACQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLG 355 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D + Q +L + VK GGI+ +S C++ +Q+++E V + L+ P + Sbjct: 356 DSQRLHQIQGAILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTA 415 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K A L+ + P G DGFF L+R+ Sbjct: 416 RMLKDNRQAQTLT------LLPSDY--------GSDGFFISNLQRV 447 >gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 269-3] gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii SJ-7A-US] gi|282933871|ref|ZP_06339219.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 269-3] gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii SJ-7A-US] gi|281301960|gb|EFA94214.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus jensenii 208-1] Length = 437 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 124/459 (27%), Positives = 209/459 (45%), Gaps = 45/459 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR V+ L V +++ L ++ LSQ+DQ V +V T+++ Sbjct: 1 MTNS--ARAVALATLIKVFKQKSYSNLSLSHALNEN---NLSQKDQAFVTQLVYGTIQYQ 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENR 118 ++ L +L + L L+ LL +SV Q+++L V + AV+D A + AK K+N Sbjct: 56 LFLEYQLKDLLRTKLKED--YLKPLLLMSVYQLIFLNRVPNRAVLDEANKLAKDFGKKNS 113 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDAC 172 +LVN ILR R L + + PEW + +G +R + + Sbjct: 114 SGFRLVNGILRSFLRRGQVLPSPKDPVHFLSIKESMPEWLVQYFVKNWGLKRTEKLLISL 173 Query: 173 ISPLYIDLTVKFDIE------TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + V ++ + + +V T + SIV+ F G +Q Sbjct: 174 NERAENSIRVAKGLDHSKIVNSLQKQGFSVNESTLADNCFIVDHSIVNTNEFKSGQITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ V F N VLD CAAPGGKT Q +S KVT+LD+ K++L ++ Sbjct: 234 DEAASLVVDCFDLRENDHVLDTCAAPGGKTTQLAENLSHGKVTSLDIHKKKLNLIKKYAQ 293 Query: 285 RLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+H+ + + +DA + F+ +LVDAPCS G +RR P++ + + D+ Sbjct: 294 RMHVDDRVETLALDARKAAEHFSDTKFNKILVDAPCSGLGLLRRKPEIRYDKTIKDVHNL 353 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L +K G +V+S CS+ +++E+V+ + L+ P EL+P+ + +S Sbjct: 354 ARIQLAILDNVAQLLKKNGELVYSTCSITIEENEQVIAEFLKKHP-EFELMPITLSKVQS 412 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 ++I PD G DGFF ++ Sbjct: 413 KSS---------LKILPDTY--------GSDGFFIAKMK 434 >gi|261367358|ref|ZP_05980241.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum variabile DSM 15176] gi|282570118|gb|EFB75653.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum variabile DSM 15176] Length = 437 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 103/456 (22%), Positives = 173/456 (37%), Gaps = 36/456 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R ++ L + +LD E L RD I L + P +D Sbjct: 1 MTPRRLAVKALLHQEQAG-YANLVLDAELKKCT-PPLEGRDAAFAARIFYTVLEYQPLLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +LD + R ++ +LR +AQ +++V A V+ +V+ K + A +V Sbjct: 59 FLLDRFSKKPVARLDAPVRAILRAGLAQARFMEVPLPAAVNESVKLTKAMGKT-SAAGMV 117 Query: 125 NSILRRVSREKIELLQRIA-----GISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 N++LRR + ++ I L E ++ A + Sbjct: 118 NAVLRRAAVYPVKEKDFADPLERLQIYDCLSRPVAALLYQEYGEETFDLAAAFRNRPVSA 177 Query: 180 LTVKFDI---ETWAHKLNAVML-----PTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + V E L A P L E S + FAEG + VQ ++ Sbjct: 178 VRVNTLRTTDEALIQALQAEGHTVRPGPWPHALLVEFQGSPAAGNSFAEGHYHVQGLASQ 237 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 VLDLCAAPGGK A+ + + ++ + +V R+ ++ +R + Sbjct: 238 FAALSLAVRPGQKVLDLCAAPGGKSLTLAEEMQNTGELISGEVLPGRVSLIQKAFERCGI 297 Query: 289 YAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ D FD VL D PCS G I + PD+ + +D D + Q+K+ Sbjct: 298 RCARAVQNDATVPRKEWGTFDRVLCDVPCSGLGVIAKKPDIRY-KDLDGMENLCAIQQKI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L G + G +V+S C+++ Q++++ V+ L P + P + M Sbjct: 357 LQNGADSLAENGRLVYSTCTINVQENQKQVENFLCDHPEFRVVAP------ELTLPGMEQ 410 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 P G + P +G DGFF L +L Sbjct: 411 GPFGTL-FLPH--------KTGTDGFFVAILEKLST 437 >gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus harei ACS-146-V-Sch2b] Length = 430 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 107/460 (23%), Positives = 193/460 (41%), Gaps = 51/460 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R + +++ V+ K L L++ + +RD ++ I +R Sbjct: 1 MK---NTREKALQIINDVLYKGTFLEESLEIL----KASNIDERDFAFIKEITTGVVRNK 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D V+ R + +L +++ Q+ +LD V DY++VD +V AK N+ Sbjct: 54 TYLDYVIRENSKVRFNRIHKIILSILEMAIYQMYFLDKVPDYSIVDESVNLAK-IYGNKG 112 Query: 120 FAKLVNSILRRVSREKIEL------LQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 N ILR +S+EK + ++ P ++ E + YG+E + A Sbjct: 113 SISFTNGILRSISKEKHLQVTLKNSIDNLSTYYSHPRFYTEYFYDKYGEEFTKKLLKANN 172 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + V + + L P I+ F +G ++V Sbjct: 173 EKPPFTIRVNTLKINRDELIKNLTESGFDIEETTYVNALNVLNPNGIIDTEFFEKGHFYV 232 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QD + + + VLDLCAAPGGKT L + + ++ + D SK +++ ++ N Sbjct: 233 QDLGSILVSTFLNPSKDSKVLDLCAAPGGKTTHLSELMDNTGEIISCDKSKGKIKLIKEN 292 Query: 283 LDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +RL + DA + FD VLVDAPCS TG R+ PD+ W + D+ + Sbjct: 293 AERLGCTNISPMVNDARVLNEEFINKFDYVLVDAPCSGTGLYRKKPDIKWNKGIYDLKEL 352 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + +V+ G++++S CSL K ++E+V++ L+ + ++ L Sbjct: 353 GVIQLEILNKAKEYVREKGLLLYSTCSLSKIENEDVIENFLKEN-ENFKIKKLRDKDV-- 409 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P + G DGF L + Sbjct: 410 ------------LKLFPSV--------DGSDGFSICLLEK 429 >gi|297184029|gb|ADI20149.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha proteobacterium EB080_L06A09] Length = 430 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 158/439 (35%), Positives = 237/439 (53%), Gaps = 17/439 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR + LL V+ + L +++ DS L ++ +++ TLR L Sbjct: 3 KPGLFAREAAVRLLHAVLLEHRLLIDIVN--GEDSLLIDLEPSERARAQSLAMTTLRNLG 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ID VL L P ++L +LRVS A++L +A +A VD AV AKR + H Sbjct: 61 PIDIVLKKYLTKKPP---FALLNILRVSSAEMLVDGIAAHAAVDSAVTMAKRKHKTAHLK 117 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 L N++LR+V+ E IE+ +++ +P+ F+ ++ KE ++ I + +DL+ Sbjct: 118 DLTNAVLRKVASEGIEVFKKLEPQ-ELPKAFRSQMAKIATKEEIIRIERSHQIGAPVDLS 176 Query: 182 VKF--DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 K +T+ N +M+P G +RLK I + GF++G WWVQD +ASIP + F Sbjct: 177 FKDIKKAKTFLESYNGIMMPNGSVRLKRA-GQITEMNGFSDGDWWVQDLAASIPAKCFND 235 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 LN VLDLCAAPGGKT QL GA VTALD+S +RLE+++ NLDR L A I DA Sbjct: 236 LNGKKVLDLCAAPGGKTMQLASMGAIVTALDISSKRLERVKQNLDRTKLKAHCI-AADAL 294 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + P + FDA+L+DAPCS++GTIRRHPD+ + ++ D+ + QR LLL+ ++ PGG Sbjct: 295 KWKPAERFDAILLDAPCSASGTIRRHPDLPFAKENFDLGELLKLQRALLLKASGWLAPGG 354 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++S CS+ + E VQ + + + L P + +G IR+ PD Sbjct: 355 ELIYSTCSIFSAEGEGQVQWLSKQNNN---LAPQKIDPTLLGLYEFMANNDGQIRLRPDY 411 Query: 420 LEKIDGVSSGMDGFFAVAL 438 GMDGFF Sbjct: 412 FAD----QGGMDGFFVAKF 426 >gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis ATCC 35896] Length = 440 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 112/457 (24%), Positives = 191/457 (41%), Gaps = 43/457 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ + V K + + L RD++ +V TL + +D V Sbjct: 4 VRKLAYDSVYAVKYKGVYSNLYISQSIKKYR---LIDRDRVFYTELVYGTLENIKFLDYV 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 +D + + + +L VS+ QI Y+D V ++AVV+ V AK N VN Sbjct: 61 IDKFSNVKVDKLSKEVLTILEVSLYQIHYMDGVQNFAVVNEMVNLAKVVWHNARIPSFVN 120 Query: 126 SILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 ILR + R R++ + EW E L N Y E+ I A I Sbjct: 121 GILRNILRNPNAFDILLPPGKKRLSIEYSVSEWISELLINQYSLEKAEDILYALSQHPAI 180 Query: 179 DLTVKFDI---ETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDAS 229 L V + + KL ++ + T I + I F +G + +QD S Sbjct: 181 YLRVNMNKVTTDRLKEKLCSLGVDTEKVVGFDNILQTKHFNGIEKNEYFLKGYFTIQDIS 240 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + ++ +LD+CAAPGGKT ++I V + D +L + + RL Sbjct: 241 SVCCIKALSPKTGEKILDICAAPGGKTTAIAEIIGEKGIVFSNDKGVNKLNLISQSAKRL 300 Query: 287 HLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L ++ ++DA ++ K++FD VLVD PCS G IRR P++ + + + Q Sbjct: 301 CLDNIELSDIDACEFQENWKEMFDRVLVDVPCSGLGVIRRKPEIRY-KQGVEFKSLYPIQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +K+L +VK GI+++S C+L++++++EV+ L + + + Sbjct: 360 KKILDNASQYVKKDGILIYSTCTLNREENQEVIHHFLSTHTNFTLDDMIIPTLGQVY--- 416 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + + PD DGFF L+R+ Sbjct: 417 ------GMVELLPD--------EGQWDGFFISKLKRI 439 >gi|319939671|ref|ZP_08014030.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus 1_2_62CV] gi|319811260|gb|EFW07566.1| ribosomal RNA small subunit methyltransferase B [Streptococcus anginosus 1_2_62CV] Length = 437 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 120/451 (26%), Positives = 194/451 (43%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + V + L+ + LS D+ LV IV T+ ++ Sbjct: 8 ARQTALAVFEAVFSEGAYSNIALNQTLLEVP---LSSADKGLVTEIVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + L LL +S+ QI YLD + +AVV+ AVE AK K + K VN Sbjct: 65 LSHVIENR-DKLDSWLYILLLMSLYQIQYLDKIPAHAVVNEAVELAKARK--KGSEKFVN 121 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LRR +R + +P W + L YG++R LAI ++ + Sbjct: 122 AVLRRLLRDGVADIGSIKRKNKRYSIQYSLPVWLVKVLIEEYGEKRALAIFESLFLRNKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + E L A L + F EG +QD S+ + Sbjct: 182 SVRVVDLSRKEELKQLLQAEDSLLAPSALVKSHGHFAGHALFEEGAITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + VLD C+APGGKT + ++ +VTALD+ + +L ++ N RL + Sbjct: 242 LELRGDEKVLDACSAPGGKTMHIASYLTTGQVTALDLYEHKLALIKENAQRLGVADKVIT 301 Query: 294 IEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA FD +LVDAPCS G IRR PD+ + ++ D Q ++L Sbjct: 302 KKLDARKVFETFGADAFDKILVDAPCSGIGLIRRKPDIKYNKENADFASLQKIQLEILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ Q++ +VV++ L + P N K + + Sbjct: 362 VCQSLRKGGIITYSTCTIVSQENFQVVEQFLAAHP--------NFKQVKLEHNRQDILKD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I ITP++ G DGFF +R+ Sbjct: 414 GCILITPELY--------GSDGFFISQFKRI 436 >gi|302381615|ref|YP_003817438.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192243|gb|ADK99814.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 463 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 158/439 (35%), Positives = 230/439 (52%), Gaps = 19/439 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR+ + LL+ + +R L + L A L D+ RA+ LR L I Sbjct: 43 GVEARIAAGILLNAALERRNGLDEAMSL----PAVAALPGPDRAFARAVAMAALRRLGEI 98 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D +L+ L S P +++ LLR+S+AQ L L +A V AV+ A+RD + R + L Sbjct: 99 DHILNQRLQKSPPE---AVRTLLRISLAQTLVLGTPAFAAVSTAVKLAERDAKTRPYKAL 155 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN++LR V RE L S +P+W R YG + AI+ A DL++K Sbjct: 156 VNAVLRGVEREGPGLTTA---ESNLPDWIAARWRQAYGPATLAAIALAAREEPPTDLSLK 212 Query: 184 FDIETWAHKLNAVMLP-TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 + A GG + + + PG+ G WW+QDA+A+IP ++ Sbjct: 213 PGEDAAALAEALEATVLPGGTVRSGVRGDVSAWPGYDAGGWWIQDAAAAIPARMLAPKAG 272 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 + LD+CAAPGGKT QL SGA V ALD S+ RL +LR NL+R L +I+ A D+ Sbjct: 273 ETALDMCAAPGGKTLQLAASGASVVALDRSEARLRRLRQNLERTGLS-VEIVVTAAEDWD 331 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FDAVL+DAPC++TGT+RR+P+VL ++ K A Q +LL V PGG +V Sbjct: 332 DPRTFDAVLLDAPCTATGTLRRNPEVLRATKPAEVAKLADVQHRLLDAAALRVAPGGRLV 391 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL++++ E V LR +P VP + A + A AL+PEGW+R+ P Sbjct: 392 YCVCSLEREEGETQVIAFLRRNP-DFRTVPADVAAVGAP--AEALTPEGWLRVLPSYW-- 446 Query: 423 IDGVSSGMDGFFAVALRRL 441 G+DGFF L+R+ Sbjct: 447 --PEQGGLDGFFIAGLQRV 463 >gi|322412409|gb|EFY03317.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 440 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 114/450 (25%), Positives = 204/450 (45%), Gaps = 36/450 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L + + L+ + + AF S +D+ L+ IV T+ ++ L Sbjct: 10 RGKALLTLENIFDQGAYTNIALNQQLSNKAF---SAKDRALLTEIVYGTVSRKISLEWYL 66 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + LL +S+ Q++YLD +A+V+ AV AK + K VN+ Sbjct: 67 AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 125 Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177 ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 126 ILRQFTSHPLPDMGTIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 185 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 I +T +E A L+A L + + FA G +QD S+ + Sbjct: 186 IRVTDPLKLENIAEDLDAERSLLSATGLTKASGHFAASDYFANGDITIQDESSQLVAPTL 245 Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 +LD C+APGGKT+ + + KV ALD+ +LE ++ N DRL + + Sbjct: 246 SIDGEDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENADRLGVADNIETR 305 Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 306 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 365 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 ++ GGI+ +S C++ +++ +V++ L+S P N K + +G Sbjct: 366 CQTLRKGGIITYSTCTIFDEENRQVIEGFLQSHP--------NFEQVKLNHTQADIVKDG 417 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ ITP+ + DGFF +RR+ Sbjct: 418 YLIITPEQYQ--------TDGFFIGQVRRV 439 >gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533] gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533] Length = 438 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 194/457 (42%), Gaps = 45/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKPADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L+ LL +S Q +L+ V A+ D A + AK+ K N KL Sbjct: 60 QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117 Query: 124 VNSILRRVSREKIELLQRIAGISI------IPEWFKERLENFYGKERVLAISDACISPLY 177 +N ILR + R+ L + P+W E L + +G+ + I P Sbjct: 118 INGILRALERQGEILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENKTKEILVRSNQPAA 177 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + D E +L L + F G +QDA+ Sbjct: 178 NSIRMTTKESDFEEIKEELKKDNFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F + VLD C+APGGKT Q+ + V ALD+ + +L +R +RLH Sbjct: 238 ASLAVDAFYFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297 Query: 288 LYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +DA Y + FD +LVDAPCS G IRR P++ + + +DI A Sbjct: 298 VSDKVRTKALDARKAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + GG +V+S C++ ++ E VV++ L+ P EL+P+ Sbjct: 358 QLAILESVSGLLANGGELVYSTCTISYEEDEGVVKQFLKLHP-DFELIPVQVGKLP---- 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P S G DGFF L++ Sbjct: 413 -----KQEMVRIFPS--------SDGSDGFFIAKLKK 436 >gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8819] gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase B [Staphylococcus aureus A8819] Length = 428 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 99/449 (22%), Positives = 184/449 (40%), Gaps = 44/449 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ + ++ + ++ ++ L+ D+ L IV T++ +D Sbjct: 4 NVRSLAFDTIQDILNEGAYSNLRINEVLSEN---ELNAMDKALFTEIVYGTVKRKYTLDF 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + ++QLL +S+ Q +YLD V ++A+++ AVE AK + H +V Sbjct: 61 YLKPFVKTKIK---AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKE-RGGYHNGNVV 116 Query: 125 NSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 N ILR + R + R+A +P+W + YG E I + + Sbjct: 117 NGILRTMMRSDLPDFNEIADPKKRMAIEYSMPKWIIDHWATHYGLEETETILQSFLETTS 176 Query: 178 IDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + KL L + I+ F +G +QD S Sbjct: 177 TTVRANLTRASLDDIIEKLQDEGYDVEKDHDLPYCLHIGGQPIIHSRSFKDGFVSIQDKS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD C+APGGK + + +V A D+ +++ + N+ +L Sbjct: 237 SMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDASDIHDHKIDLINFNIKKL 296 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 L + DA K +D +LVDAPCS G +R P++ +T+ I Q + Sbjct: 297 RLTNIKAFQHDATKPYDKT-YDKILVDAPCSGLGVMRHKPEIKYTQSKQHIESLVELQLE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + VK GG +++S C++++ ++E V+ L+++ E P + Sbjct: 356 ILENVKNNVKIGGEIIYSTCTIEQLENENVIYTFLKNNKN-FEFEPFQHPITGELV---- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 ++I P DGFF Sbjct: 411 ----KTLQIMPQDF--------NSDGFFI 427 >gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella grylli] gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella grylli] Length = 442 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 221/456 (48%), Gaps = 40/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R +++H++S ++K+I+L +L E + RD+ ++ + +R+ + Sbjct: 3 NTRRIAAHIISRFLKKKIALNTILFAEV----PSGIDVRDRAFIQELCYGVIRWYFPLKK 58 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + F+L SL R + L+ V + Q+ YL+++ +A V V+ AK ++ R A L+N Sbjct: 59 LSSFLLKKSLNRSDQDIYALVLVGLYQLNYLNISPHAAVYETVQAAKELRK-RWAAPLIN 117 Query: 126 SILRRVSREKIELLQRIAGISI--IPEWFKERLENFYGKERVLAIS-DACISPLYIDLTV 182 +LR R+K LL++++ I+ P+W ++L++ + + + ++ + + + Sbjct: 118 GVLRSFQRQKTGLLKKVSQITHLAHPDWLIKKLQHAWPNAWRSILDANNHLASMSLRVNQ 177 Query: 183 -KFDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KLN + + + + + LPGF G +Q+ SA + Sbjct: 178 LEITRESYLQKLNNNNINATLSELSQSGIILDTSFPVDKLPGFRTGEISIQNISAQLSAS 237 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAED 292 L + VLD CAAPGGKT ++ + A+D RL +L+ NL RL L + Sbjct: 238 LLLLEDGQHVLDACAAPGGKTTHILETQPELACCVAVDADVVRLTRLKDNLKRLKLTEKK 297 Query: 293 II-----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 I D + ++FD +L+D+PCS TG IR+HPD+ R D+++ A Q +L Sbjct: 298 IQLFPMKVQDFKIFWKGRMFDRILLDSPCSGTGVIRKHPDIKLLRREKDVIQLADQQYQL 357 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGGI+++ CS+ +++ V+++ L E V I L Sbjct: 358 LSSLWGLLKPGGILLYVTCSVLPEENANVLKRFLTHHFDAREEV---------IRETWGL 408 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +I P++ G DGF+ LR+L++ Sbjct: 409 ACPIGRQILPEI--------HGADGFYYARLRKLMR 436 >gi|114799841|ref|YP_762041.1| putative ribosomal RNA small subunit methyltransferase B [Hyphomonas neptunium ATCC 15444] gi|114740015|gb|ABI78140.1| putative ribosomal RNA small subunit methyltransferase B [Hyphomonas neptunium ATCC 15444] Length = 423 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 148/443 (33%), Positives = 219/443 (49%), Gaps = 28/443 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 SG RL + LL+ V+ K+ +L L D A+ L D+ RAI + LR L Sbjct: 2 SGAPIRLAAGRLLNLVLDKKRTLDDALAT---DDAYNNLDGSDRAFARAIASSALRHLGW 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ID + L L ++ L+R AQI ++DV +A V VE A+ R Sbjct: 59 IDRGVSPFLSRPLSATGAEIRALIRAGAAQIWFMDVPHHAAVSETVEAARLWSPARSGGG 118 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +N+ LRRV+ I+ +++ P+W RL + YG+E A++ + + + L+ Sbjct: 119 FLNAALRRVTES-ESPAATISPLALWPDWLASRLGSAYGREAAEALALSQLEEPSLHLSP 177 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 K D A +LP G + + ++ +LPG+A G WWVQDA+A IP QL Sbjct: 178 KGDGARVAEATGGTLLPDG--AIDIVSGAVETLPGYAAGDWWVQDAAARIPAQLLSPQTG 235 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 +LDLCAAPGGKT QL +GA VTALD S+ RLE+L+ NL R L+AE II D + Sbjct: 236 ERILDLCAAPGGKTLQLAAAGADVTALDRSRPRLERLKENLARTGLHAEVII-ADGEAWA 294 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P LF +L+DAPCS+ GT+RRHP+ W + DD+ + Q +LL + PGG +V Sbjct: 295 PPALFPKILLDAPCSALGTLRRHPESAWIKTEDDVARFPGVQARLLAAAAGMLAPGGTLV 354 Query: 363 FSNCSLDKQDSEEVVQK-----VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 + C+ + ++V+ +L SP+ E +P AL+P G + P Sbjct: 355 YCVCTPVPAEGVDIVEAAIGKGILTRSPVKAEEIP---------GFEAALTPAGDVLTLP 405 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 D F+ L + Sbjct: 406 GTG-------GKHDAFYIARLIK 421 >gi|83855202|ref|ZP_00948732.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. NAS-14.1] gi|83843045|gb|EAP82212.1| ribosomal RNA small subunit methyltransferase B, putative [Sulfitobacter sp. NAS-14.1] Length = 406 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 137/415 (33%), Positives = 214/415 (51%), Gaps = 16/415 (3%) Query: 26 TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL 85 L+ A L D+ + + TLR + R D +L L P +++ Sbjct: 6 ERLMSELLSAGALDKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPP---LTVRNA 62 Query: 86 LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145 LRV ++ A + VV+ VE K+ H L N++LR+++ E E + Sbjct: 63 LRVGTVELCQGG-AAHGVVNAMVELVATHKKLGHLKGLTNAVLRKIAAEGPEAWAAL-RA 120 Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+W + L +G + + I A + +DLT K D E A + +LPTG +R+ Sbjct: 121 PRLPKWLRGPLTEAWGPDAMTGIEAAHFAGAPLDLTAKRDPEGLAAAVGGTVLPTGSVRV 180 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265 + + ++PGFAEG WWVQDA+A++PV++ +VLDLCAAPGGKT QL +GA+ Sbjct: 181 ADA-GQVTTMPGFAEGDWWVQDAAAALPVKILAPQKGEAVLDLCAAPGGKTMQLAAAGAQ 239 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 VTA+D SK+R++++R NL R+HL A+ ++ + FDA+L+DAPCS+TGTIRRH Sbjct: 240 VTAVDNSKQRMQRVRENLARVHLPAKVVVV---DARRFEGTFDAILLDAPCSATGTIRRH 296 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+ +D + Q +++ S + PGG ++F CSL + E V + L Sbjct: 297 PDLPHAKDGSEFGDLIELQSEMIDHAWSLLNPGGRLIFCTCSLLPDEGEVQVDEALERHA 356 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V ++ +D A + EG +R+ PD GMDGF+ LR+ Sbjct: 357 DM--RVDRDALAVPGVDPAWT-TQEGGLRLRPDYW----PELGGMDGFYIACLRK 404 >gi|114767262|ref|ZP_01446112.1| ribosomal RNA small subunit methyltransferase B, putative [Pelagibaca bermudensis HTCC2601] gi|114540615|gb|EAU43687.1| ribosomal RNA small subunit methyltransferase B, putative [Roseovarius sp. HTCC2601] Length = 420 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 141/440 (32%), Positives = 222/440 (50%), Gaps = 22/440 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR S LL V+ + LL SA+ + D+ + + LR L Sbjct: 1 MPPIPTARAQSVALLGQVLGQGR----LLSDAMTGSAWEAMPAPDRAAAQRMAQEVLRNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R D +L L S P ++ +LR+ ++ A + VV+ V+ D++ + Sbjct: 57 ERCDRLLKPHLRKSPP---LFVRNVLRLGAWELA-TGGAAHGVVNDCVQIVAGDRKTQSM 112 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LR+++ E + + +P W +E L +G + V A+ A ++ +DL Sbjct: 113 KGLVNAVLRKLTEEAPAKWSTL-RVPRLPRWLREPLTIAWGNKAVAAMEAAHLAGAPLDL 171 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + K D A + +LPTG +RL + +LPG+ G WWVQDA+A++P +L G + Sbjct: 172 SAKADAAALAAAVGGSLLPTGSVRLA-SAGQVSALPGYDTGDWWVQDAAAALPARLLGDV 230 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 L++LD+CAAPGGKT QL +GA VTALD+S+ R+ ++R NL R L A + Sbjct: 231 TGLNILDMCAAPGGKTMQLAAAGANVTALDLSEARMGRVRENLARTGLEAATVT---GDA 287 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +DA+L+DAPCS+TGTIRRHPD+ + + I + Q ++ + + PGG Sbjct: 288 LAHDGTYDAILLDAPCSATGTIRRHPDLPQAKQGEGISELIGLQAAMIDHALRLLAPGGR 347 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +VF CSL + E V++ L P L P + ++ S EG +R+ PD Sbjct: 348 LVFCTCSLIPDEGECQVEEALARHPGLEVLRPEAAGVEEA-----WRSEEGGLRLRPDFW 402 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GMDGF+ LR+ Sbjct: 403 AE----RGGMDGFYVAILRK 418 >gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 418 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 117/442 (26%), Positives = 193/442 (43%), Gaps = 38/442 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ L V+ L L + ++ ++ +V +LR L RIDA LD Sbjct: 6 KIAADALEDVLAG-----AALHQVLPAGQRLLTTPGERGALQDLVYGSLRQLGRIDAWLD 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L L L+ LLR+++ Q+ Y +A+V AV A ++ + Sbjct: 61 ALLERPLT--DPHLESLLRIALYQMAYTRAPAHAIVHNAVSAAGGGWRRGLANAVLRNFQ 118 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKF-DI 186 RR + + PEW+ E+L Y + ++ + + P + + ++ + D+ Sbjct: 119 RRRAELDALAEAKPGARWSHPEWWIEKLRAAYPERWQAILAASLLHPPFTLRVSSRHGDV 178 Query: 187 ETWAHKLNAVMLPTGGIRLK----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 ++ +LN LP + E + LPGFAEG VQDA A +L G Sbjct: 179 ASYLAELNEAGLPAHRSGQQAVTLEKAVPVQLLPGFAEGRVSVQDAGAQHAARLLGAKPG 238 Query: 243 LSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAF 299 VLD CAAPGGKT ++ + + ALDV RL +++ NLDRL L+A + Sbjct: 239 ERVLDACAAPGGKTGHILELADVDLVALDVDAARLARVQENLDRLRLHATLVEGDAARPE 298 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + + FD +L D PCS++G +RR+PD+ W R DI + A Q ++ ++PGG Sbjct: 299 AWWDGRPFDRILADVPCSASGVVRRNPDIKWLRRPGDIAQFAAQQAVIVEALWRLLRPGG 358 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++++ CS+ +++E VQ L E L + PD Sbjct: 359 TLLYATCSIFHEENEGQVQAFLARHVQDAERCSLPEPLSDGS-------------LLPDA 405 Query: 420 LEKIDGVSSGMDGFFAVALRRL 441 DGFF LR++ Sbjct: 406 E---------HDGFFYALLRKI 418 >gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112] gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL 1118] Length = 442 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 195/461 (42%), Gaps = 44/461 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +AR +S L V++ + L+ S LSQ DQ L IV T+++ Sbjct: 1 MSTSKSARAISLETLIKVLQDKSYSNISLNNSLNHS---DLSQADQNLATKIVYGTIQYR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ L K L+ LL +S+ QI++LD V + AV+D A + AK+ ++ Sbjct: 58 LFLEYQLKGLVRIKLTEK--YLKPLLLMSIYQIVFLDKVPNRAVLDEANKLAKQFGKHHS 115 Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 V + + R + + ++ ++ +PEW N +G +R + ++ Sbjct: 116 SGYRVVNGILRSFIRRGVILPDAKDEIKYLSVKESMPEWLVNYFANHWGMDRTKKLLESI 175 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWV 225 P + ++ D + ++L + + F G + Sbjct: 176 NQPAKNSVRISALCDRDQVFNQLKTEGYEPEWSNLSVNDIILGHGGVSQSDLFKRGKLTI 235 Query: 226 QDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCN 282 QD + + + +LD C+APGGKT Q+ VTALD+ +++L ++ N Sbjct: 236 QDEAASLVIESFDFDSKEEHILDACSAPGGKTVQMAERVVVGDVTALDIHEKKLHLVKEN 295 Query: 283 LDRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 R+++ I DA F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 296 AKRMNVANKVKIKACDARKVQDVFKPGEFTKILVDAPCSGLGLLRRKPEIRYTKTERDLQ 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q +L +K G +V+S CS+ ++ E VV+K L+ P EL P + Sbjct: 356 NLQKIQLAILESVSPLLKEDGELVYSTCSISVEEDEAVVEKFLKLHP-DFELKPFKLSKL 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + S G ++I PD DGFF + Sbjct: 415 E--------SKTGMLKIMPD--------QDNNDGFFIAKFK 439 >gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101] Length = 454 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 181/469 (38%), Gaps = 63/469 (13%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R ++ +L V L+ E G + LS D+ L + +R Sbjct: 14 KGLAPRRLAWQVLQAV-AAGAYADGALERELGRT---SLSPADRGLATELAYGAIRQRRL 69 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +DA LD + R+ L+ LL + + Q+L D V A V VE AKR A Sbjct: 70 LDAWLDQLGKVPAERQPPKLRWLLHIGLYQLLASDRVPPSAAVSTTVELAKR-GGLARLA 128 Query: 122 KLVNSILRRVSREKIELLQRI-------------AGISIIPEWFKERLENFYGKERVLAI 168 + N +LR R + +P W L + ER A Sbjct: 129 PVANGMLRAFLRRREAGDTLPLTPEQAGDPATALGVRQSLPPWLAAELLGWVPPERAEAF 188 Query: 169 SDACISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGF 218 AC +P +DL V T A + + GI L+ + LPGF Sbjct: 189 GLACNTPPSLDLRVNRLRSTPAEVCAALAAAGVEALPIEGLPAGITLQGRSGDLSRLPGF 248 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRR 275 EG W VQD +A L +LD CAAPGGK+ + V ALD + R Sbjct: 249 GEGHWCVQDRAAQRIAPLLDPQPGERILDACAAPGGKSTHLAEWMGDQGMVLALDRGEAR 308 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLW 330 L ++ N +RL L + + DA ++ FD +LVDAPCS GT+ RH D W Sbjct: 309 LRRVSRNAERLGLRSIAVQHGDATALAQEQPELQGSFDRILVDAPCSGLGTLARHADARW 368 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 D I + QR+LL + +KP G +V++ C++ ++ ++ + P Sbjct: 369 RIDPAAIGELVVLQRQLLEGLLPLLKPKGRMVYATCTVHPSENSALIDAFVADHP----- 423 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 AL + ++ P L DGF+A L Sbjct: 424 ---------------ALQVQQSWQLWPGELAGAG------DGFYAAVLE 451 >gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus parainfluenzae T3T1] Length = 445 Score = 234 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 208/456 (45%), Gaps = 41/456 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + ++ R +++ ++ V+ + SL+ LL + +D L++ I R LP Sbjct: 11 STALSVRAIAAQVILQVLDQGKSLSTLLPEV-----QSQVKPQDLPLLQEITFGICRVLP 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R++ ++ +L L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 66 RLENIIKKLLDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFR 124 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN +LRR RE+ ++ + ++ PEWF +L+ Y R + ++ P+++ Sbjct: 125 GLVNGVLRRFLREQEDILAVVDKHWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLR 184 Query: 180 LTVKFDI----ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIP 233 + + + T + L + + LP F +G VQD +A Sbjct: 185 VNQQQNNTKTYSTLLEEQEIAAFECDNPHALRLAQPLSVSKLPNFEQGAVTVQDLNAQWS 244 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAE 291 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL RL+ A Sbjct: 245 ALLLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLTRLNQQAT 304 Query: 292 DIIEMDAFDYCP-------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 305 VVCGDATEPEKWLSEIGLNGASFDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQ 364 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + +KP GI++++ CS+ ++ + +Q +L + EL+PL ++ Sbjct: 365 GQILKALWAKLKPNGILLYATCSVLPDENSQQIQHLLAET-SDAELMPLPFEQTENTI-- 421 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I+ P +G DGF+ LR+ Sbjct: 422 -------GIQFLPQ--------ENGGDGFYYAKLRK 442 >gi|332991527|gb|AEF01582.1| 16S rRNA methyltransferase B [Alteromonas sp. SN2] Length = 444 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 198/465 (42%), Gaps = 50/465 (10%) Query: 1 MKSG-----MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK N R + ++ ++ + S L+ RD ++ + Sbjct: 1 MKPTPLPKQKNLRADCAWVIYQILEQGKSSRDCLERVQRRHH-----PRDNAWIQEMSLG 55 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R LP + L +L L K ++ L+ + + Q+ + V+ +A V V A Sbjct: 56 VMRKLPILQHWLRELLDRPLKGNKKVIEHLILLGLYQLAFSRVSQHAAVGETVN-ASPYL 114 Query: 116 ENRHFAKLVNSILRRVSREK--IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 LVN++LR R++ + + S +P+W + LE+ YG++ A+ +A Sbjct: 115 GGTALKGLVNAVLRNFMRQELVNKPIDNPIIASGLPKWLYKALEDAYGQD-ADAVREATN 173 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWW 224 + I L V I +A L+AV + E E I LPGF +G + Sbjct: 174 AMAPIWLRVNTKQISITDYAAALDAVEINYSLSSEHADAIRLEGREDITGLPGFEKGHFA 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRC 281 VQD +A + + VLD CAAPGGKT +I + ALD + RL+++ Sbjct: 234 VQDGAAQLAAHYLDAQPHERVLDCCAAPGGKTGHIIERTPELAYCLALDADENRLKRVEE 293 Query: 282 NLDRLHLYAEDIIE------MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N+ RL ++ + + FD +L+DAPCS+TG IRRHPD+ W R + Sbjct: 294 NMTRLQHTQTNLPVIKQGDAAKPETWWDGQHFDRILLDAPCSATGVIRRHPDIRWLRKSS 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI A Q ++L +KPGG ++++ CS+ Q++ + + L + LVP+ Sbjct: 354 DIDALAALQAEILTSLWQTLKPGGTLLYATCSILPQENSQQISAFLERN-ADATLVPVIK 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +I P + MDGF+ L + Sbjct: 413 TETPSKP---------GRQILPGEQQ--------MDGFYYARLVK 440 >gi|227534879|ref|ZP_03964928.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187635|gb|EEI67702.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 446 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 186/465 (40%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ LS V + LD L+ RD L+ IV ++ Sbjct: 1 MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + + ++ LL +V Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDFYLAPFIKG--RKLDNWIRCLLDTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR R IA S P W E+L G+ + AI + Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + L V T A L ++ I L + F +G + Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L +DA P FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFPANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D Q +L +K GG + +S C++ K+++++VV + L + P ++ Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A A +++ PD + DGFF +L R Sbjct: 414 KPLHKAHNAPA------LQLFPDDYD--------TDGFFIASLIR 444 >gi|297570244|ref|YP_003691588.1| sun protein [Desulfurivibrio alkaliphilus AHT2] gi|296926159|gb|ADH86969.1| sun protein [Desulfurivibrio alkaliphilus AHT2] Length = 501 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 134/493 (27%), Positives = 201/493 (40%), Gaps = 72/493 (14%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R V+ +L ++ L +L + +RD+ LVRA+V LR + Sbjct: 15 GLRPRQVALEILLQQEQQNRPLDQVLAEY--PARRWPSDRRDRQLVRALVYEVLRRRGFL 72 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAK 122 D V+ L + K LR+ +AQ+LY D A +D + K ++ R Sbjct: 73 DHVVARYAKHPLAKMKPLTLAALRLGLAQLLYFDRLPPAAAIDETIRALKAARQPRWITG 132 Query: 123 LVNSILRRVSREKIELLQRIAGISII---PEWFKERLENFYGKERVLAISDACISPLYID 179 VN +LR +RE+ ELL+ A P W ++R E G+ER S A P + Sbjct: 133 FVNGLLRNAARERAELLRLAAEQCDWLSVPAWLRQRREQQLGQERAYHRSRAENQPPPLV 192 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDAS 229 L V + T A +L + RL + LPGF EG + VQD + Sbjct: 193 LRVNTAKINCATLAEQLQHNGIEVEESTFAPAALRLPSYHGRVEELPGFNEGWFAVQDEA 252 Query: 230 ASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCN 282 A + LD CA GGKTA L + +++ AL+ R L N Sbjct: 253 AQLVTMLLQKEPDPEPGALFLDACAGLGGKTAHLAELLPAESRLVALEPHTGRFALLAEN 312 Query: 283 LDRLHLY-----------------------------------AEDIIEMDAFDYCPKKLF 307 L RL A +D+ P Sbjct: 313 LARLGHKFFKLPPDGPPEELARRLQTAAAGKPAPLLLCPQTLASFARLLDSASVAPAFQG 372 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 +L+DAPCS G +RRHPD+ W R +D+ + Q LL Q + PGG++V++ CS Sbjct: 373 --ILLDAPCSGLGVVRRHPDIRWNRQPEDLPRYCKQQIALLDQAAKLLAPGGVLVYAVCS 430 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + +++ EV+Q + P EL + W A + EG++R TP Sbjct: 431 NEPEENREVIQALTSRHP---ELEVTDPRPWLPPPAATLVDDEGYLRSTP---------E 478 Query: 428 SGMDGFFAVALRR 440 +G+DGFFA L+R Sbjct: 479 TGLDGFFAARLQR 491 >gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum ATCC 14931] gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum ATCC 14931] Length = 448 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 116/466 (24%), Positives = 195/466 (41%), Gaps = 44/466 (9%) Query: 1 MKSGMN----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M AR ++ L V L+ LS D+ LV A+V T Sbjct: 1 MTKKQAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGT 57 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L+ +D L + + + ++ LL +++ Q YLD V ++A D A+E AKR Sbjct: 58 LQHQRTLDYWLSPFIAG--KKVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRG 115 Query: 116 EN---RHFAKLVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 R ++++ILR + + QR+A + +P+W + L YG + A++ Sbjct: 116 NPGVRRFVTGVLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALA 175 Query: 170 DACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEG 221 P I L V T + L +++ F G Sbjct: 176 KVINEPARISLRVNRAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKL 279 V +QD SA + V+ + VLD CAAPGGKT Q+ + +V ALD+ + ++ + Sbjct: 236 VVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTDGEVYALDIHRHKVGLI 295 Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N R+ + ++DA + + FD +LVDAPCS G +RR P++ + + Sbjct: 296 EKNAQRMGVDNRVFARQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLG 355 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D + Q +L + VK GGI+ +S C++ +Q+++E V + L+ P + Sbjct: 356 DSQRLHQIQGAILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTA 415 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A L+ + P G DGFF L+R+ Sbjct: 416 RMLEDNRQAQTLT------LLPSDY--------GSDGFFISNLQRV 447 >gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704] gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704] Length = 436 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 94/463 (20%), Positives = 183/463 (39%), Gaps = 54/463 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +N R + +L + R L ++ L ++++ + +VN TL + Sbjct: 1 MAASVNGRELVLDILLQITRDGEYSHIALKNVL--DKYQYLDKKERAFITRVVNGTLEHM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ + + K ++ ++R +V Q+ Y+D V D AV++ AV+ A + + Sbjct: 59 IEIDYIINQFSKVKVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAVKLASK-RGFST 117 Query: 120 FAKLVNSILRRV--------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 VN +LR V + + L + +P+W ++ Y +E V I++ Sbjct: 118 LKGFVNGVLRSVSRNLESVAYPSEEDRLAWMEIRYSLPQWILKQWLASYDEETVKRIAEE 177 Query: 172 CISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGV 222 + I + + T L + + L F +G Sbjct: 178 FLKEKPITVRCNLEKITKEELLKLLKEEGVTVEEEPAVPYALYLSGYDHLAGLNSFRQGY 237 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 + VQD S+ + + ++D+CAAPGGK L V A D+++ ++ + Sbjct: 238 YQVQDISSMQVARWAAPKADDYIIDVCAAPGGKAIHLAEILAGTGHVEARDLTEYKVGLI 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R N+ R L+ + + DA K D V+ D PCS G + + PD+ + Sbjct: 298 RENILRSGLHNIEAVCKDATVRDEASIKKADIVIADLPCSGLGVLGKKPDLKSRMTEEMQ 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A QR +L +VKPGG +++S C++ + ++EE + + P + Sbjct: 358 KELASLQRSMLKVVKEYVKPGGKLLYSTCTISRDENEENARWLTEIDPKFRLI------- 410 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ DGF+ +R Sbjct: 411 ---------------------RQKQMLPGRDPGDGFYIAMFQR 432 >gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8] gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8] Length = 433 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 125/446 (28%), Positives = 201/446 (45%), Gaps = 37/446 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R +++++L V + SL+ L A L + ++AI T R+ R++ L Sbjct: 9 RAIAANVLLAVE-QGQSLSQCLP-----PALNQLPPEQRPQLQAICYGTCRWFHRLEGEL 62 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + L L + + L+ V++ Q+ Y + A YAV++ VE A R + H LVN + Sbjct: 63 NQRLKKPLRKPDRIIHHLMLVALFQLRYSEQATYAVLNETVE-ACRALDKPHLTGLVNGV 121 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDLTV-KFD 185 LR RE + +G P W E+L + + + + ++ +P+ + + +F Sbjct: 122 LRAAEREGAPEPKDDSGRFSHPAWMVEKLRHNWPGYWQTILEANNQQAPMTLRVNALRFK 181 Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + + L+ + R P + LP F +G VQD +A + L Sbjct: 182 RDEYLKLLSEAGIEAHATRFAPNGIQLERPVPVDRLPWFEDGAASVQDEAAQLCTTLLDL 241 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSG---AKVTALDVSKRRLEKLRCNLDRLHLYAE--DII 294 VLD CAAPGGKT ++ + +V A+D S RL +++ NLDRL L+A Sbjct: 242 QPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAERLPRVQENLDRLDLHATLTQAD 301 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D + FD +L+D PCS+TG IRRHPD+ R DIV A Q LL S Sbjct: 302 AADIDSWWDGTPFDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLEAMWSI 361 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +KPGG +V++ CS+ Q++ ++Q+ L+ N A K I+ + Sbjct: 362 LKPGGRLVYATCSVFPQENHRIIQRFLKQ---------QNQATLKCIEADWGRDMNTGRQ 412 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + PD DGFF L + Sbjct: 413 LFPD--------PDSHDGFFYAVLEK 430 >gi|94266030|ref|ZP_01289751.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] gi|93453425|gb|EAT03847.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] Length = 487 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 123/500 (24%), Positives = 189/500 (37%), Gaps = 76/500 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R V+ LL + + LL+ + + RD+ L+ A+V LR+ Sbjct: 1 MTPTANIRQVALQLLLAQEQSGQPVEQLLEHQLREHPLA--DGRDRRLLEALVYGVLRWR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +D V+ L + K LR+ + Q+L L + A ++ ++ + ++ R Sbjct: 59 GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118 Query: 120 FAKLVNSILRR--------------------------VSREKIELLQRIAGISIIPEWFK 153 VN++LR+ L +A P W + Sbjct: 119 LTGFVNAVLRKAAADIERLGRQQYLAGLVAEGTAPTGQYASPDPLPMAVAAWLSHPPWLR 178 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGI 203 +R E YG E + + L V T + L A + Sbjct: 179 QRWEQRYGLELCRELCHINNCLPPLVLRVNLHRLTASELLAQLQKAGIAATAGDYAPAAV 238 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--- 260 L + LPG+A G + VQD +A + L LD CA GGKTA L Sbjct: 239 VLPPGSGRVEDLPGYALGWFAVQDEAAQLVTMLLAGAGPGHYLDACAGLGGKTAHLAELL 298 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---------------------EMDAF 299 A +TAL+ RR L NL RL + A I + D Sbjct: 299 PPEATITALEPQSRRALLLTANLHRLGVTARLIQGELAAHLPAAELEAAGASHDKKGDTI 358 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + +LVDAPCS G IRRHPD+ W R ++ Q +LL ++PGG Sbjct: 359 PSPFLGFYRGILVDAPCSGLGVIRRHPDIRWNRRAAELKNYQRRQLELLSTAAELLQPGG 418 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++V+ CS + +++EEV+Q +L+ P + L++ A L + R P Sbjct: 419 VLVYVVCSFEPEENEEVIQLLLKRRPE----LRLSAPAPYLPVAARQLVRGDFFRSLP-- 472 Query: 420 LEKIDGVSSGMDGFFAVALR 439 S G+DGFFA L Sbjct: 473 -------SDGLDGFFAARLV 485 >gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae str. M302091] Length = 448 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + L L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHHRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NL+RL L Sbjct: 234 LAADLLELSPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A D + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 EAELIAADARDTAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|300781122|ref|ZP_07090976.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030] gi|300532829|gb|EFK53890.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030] Length = 486 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 105/459 (22%), Positives = 165/459 (35%), Gaps = 39/459 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G AR + + V + +L + + RD + TLR L + Sbjct: 44 GDAAREAAFDAVLRVETEDAFGNLVLPQILRERKVKG---RDAAFATELAYGTLRTLGVL 100 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 DAV+ L ++ LR+ Q+L V D+A VD +V A+ + + Sbjct: 101 DAVIAECSSRPLTELDPAVLTALRLGTYQLLMTRVDDHAAVDTSVRLAEAAGQGK-AKGF 159 Query: 124 VNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACI 173 VN ILR V+R + A + PEW E + A A Sbjct: 160 VNGILRTVARTSAQEWMDKLAPSDEPSATAFRTAHPEWIARSFAQVLPAEELEAALKADS 219 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + L + E A + SL + + VQD + Sbjct: 220 ERPKVHLVARPGEMSAEELALVTGGEEGRYSPYAVYLDGGDPGSLEPVRDRMAAVQDEGS 279 Query: 231 SIPVQLFGTLN-------NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCN 282 + + + + LDLCA PGGK A + A A D + + Sbjct: 280 QLIARAVTEVPVEADGGDHGRWLDLCAGPGGKAALMGSIAAIDGATVDAVEIGETRAELI 339 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + D + + FD VLVDAPCS G +RR P+ W + DD+ + Sbjct: 340 RKSTEGLPVTVHVADGRNPGLEAGFDRVLVDAPCSGLGALRRRPEARWRKSEDDVAELNT 399 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++ KPGG+VV+S CS D +++ +V K L VE + + + Sbjct: 400 LQEELLASAVNLAKPGGVVVYSTCSPDARETRGIVDKQLAK--GDVEELDAREFLSEMGE 457 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + LS ++ P G D F LR++ Sbjct: 458 LGEHLSA----QMWPH--------RHGTDAMFLSVLRKM 484 >gi|330890235|gb|EGH22896.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str. 301020] Length = 448 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 125/456 (27%), Positives = 200/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A++ K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCAEKLKKT-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + LN L + P + SLPGF EG VQD +A Sbjct: 174 RVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + K F +L+DAPCS+TG IRRHPD+ TR DDIV A Q + Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252] gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252] Length = 453 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 107/460 (23%), Positives = 183/460 (39%), Gaps = 42/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + LL + + + L+ D L V R+ +D Sbjct: 13 PARREAVRLLERIENDQAYVNRLMSAGLTD----ELEPEAGRRATEYVAGVTRWRRWLDF 68 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L+Q+LR+ + ++L+ D YA ++ AVE A+R + A +VN Sbjct: 69 LLAQNYRGRYDSMEPRLRQILRLGLYELLFTDTPPYAALNEAVELARRLVRPQAGA-VVN 127 Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 ++LR + R++ L Q A P W +R YG A+ + Sbjct: 128 AVLRSLLRQRDFLPQPQTGDPVEDLAIRYSHPTWIVQRWLARYGPADTEALLRYNNERPW 187 Query: 178 IDLTVKFDIET---WAHKLNAVMLPTGGIRLKELPESIVSL-PGFAEGVWWV-----QDA 228 + V+ D + H+L L + + + L P + + QD Sbjct: 188 FGVRVRTDRISRHVVLHRLADRGLEAEPSPVLDDFIRVQRLGPLLEDRLIEKGLLAVQDE 247 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + V+L + +++D CAAPGGKT + +V A DV +R E +R + Sbjct: 248 SAGLAVRLLDPHPDETIVDACAAPGGKTTYIATRMRDHGRVLAFDVHPKRTELIRRAALQ 307 Query: 286 LHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + +D + D VL+D PCS G + + D+ W R +++ + Sbjct: 308 QGLTSIVAEALDLRQVSERYPELQADRVLLDVPCSGLGVLAKRADLRWHRRPEELDELVR 367 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++PGGI+V+S C+++ +++E V+ L P + Sbjct: 368 LQDELLEAAARLMRPGGILVYSTCTIEPEENEARVRAFLARHPEF------TVERADAWV 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A ++ EG+ P MDG FA LRR Sbjct: 422 PAEMVTDEGFFATWP--------PRDRMDGAFAARLRRTA 453 >gi|332522158|ref|ZP_08398410.1| ribosomal RNA small subunit methyltransferase B [Streptococcus porcinus str. Jelinkova 176] gi|332313422|gb|EGJ26407.1| ribosomal RNA small subunit methyltransferase B [Streptococcus porcinus str. Jelinkova 176] Length = 440 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 115/459 (25%), Positives = 205/459 (44%), Gaps = 38/459 (8%) Query: 1 MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + AR + + + L+ + + + + +D+ L+ IV T+ Sbjct: 1 MANNWKTKARGKALLAIEDIFDNGAYSNIALNNQLSN---QSIQGKDKGLITEIVYGTIA 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 ++ L + + + LL +S+ QILYL+ V +A+V+ AV+ AK Sbjct: 58 KKITLEWYLSHYVE-DREKLDKWVYYLLMLSLYQILYLEKVPSHAIVNDAVDIAKNRGNK 116 Query: 118 RHFAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 R K +N+ILR++S +R + +P W ++L +G +R +AI + Sbjct: 117 RGAEKYINAILRQISTGTLPSLDSIKRKNKRYSITYSVPTWLVKKLFEQFGDDRAIAIME 176 Query: 171 AC--ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + S I + D + + L A P L + S F EG +QD Sbjct: 177 SLSLHSKASIRVINPQDFDEIRNNLGAQPSPLAPTALTKATGHFASNAYFQEGAITIQDE 236 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + + ++LD C+APGGKT + ++ K+TALD+ + +L +R N +RL Sbjct: 237 TSQLVAPTLAIKGDENILDACSAPGGKTCHMASYLTTGKITALDIHEHKLLLVRENAERL 296 Query: 287 H-LYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + +DA + FD +LVDAPCS G IRR PD+ + +D+ D+ Sbjct: 297 GVLDKIETRALDACRVHEVFARDSFDKILVDAPCSGIGLIRRKPDIKYNKDSQDLTALQT 356 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L ++ GGI+ +S C++ +++ +V++K L S N K Sbjct: 357 LQLEILSSVCQTIRKGGIITYSTCTIFDEENFQVIEKFLESHS--------NFEQVKLKH 408 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I +TP+ + DGFF +RR+ Sbjct: 409 TQADIVKDGCILVTPEQYQ--------TDGFFISQVRRI 439 >gi|257485586|ref|ZP_05639627.1| sun protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330985725|gb|EGH83828.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011875|gb|EGH91931.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 448 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 120/455 (26%), Positives = 200/455 (43%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + + + LN L + P + SLPGF EG VQD +A + Sbjct: 175 VNRRHNSRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDIV A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA- 413 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 -----------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|116495106|ref|YP_806840.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334] gi|116105256|gb|ABJ70398.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334] Length = 446 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 186/465 (40%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ LS V + LD L+ RD L+ IV ++ Sbjct: 1 MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQRQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + + ++ LL +V Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDFYLAPFIKG--RKLDNWIRCLLDTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR R IA S P W E+L G+ + AI + Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + L V T A L ++ I L + F +G + Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L +DA P FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFPANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D Q +L +K GG + +S C++ K+++++VV + L + P ++ Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A A +++ PD + DGFF +L R Sbjct: 414 KPLHKAHNAPA------LQLFPDDYD--------TDGFFIASLIR 444 >gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353] gi|224954565|gb|EEG35774.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353] Length = 466 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 100/462 (21%), Positives = 190/462 (41%), Gaps = 37/462 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ + R + L + R + + + F + D+ + Sbjct: 16 MEKRTDMRAEALDTLIDIERNKKLSHIAIGETLMRNQFEK--KADRAFYTRLCEGVTERK 73 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D +LD + + + K ++ LLR+ QIL++DV D A AV AK+ R Sbjct: 74 IYLDYILDHYSKTPMKKCKPLIRSLLRMGAYQILFMDVRDAAACSEAVSLAKKRGFGR-L 132 Query: 121 AKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + VN +LR +K + ++ ++ I +PEW + + YGKE I + Sbjct: 133 SGFVNGVLRTLVREKENLPVPDKKDDVKYVSIIYSVPEWLSKLIIEQYGKESAEKIFASF 192 Query: 173 ISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + + + T + + F +G + Sbjct: 193 LEARPLTIRTNLSKTTPEELEKELEEAGVKVEKGNYLPYAFTISNLNYLGKIAAFRQGKF 252 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280 VQD S+ + V + VLD+CAAPGGKT KV + D+++ + E + Sbjct: 253 AVQDESSQLAVAIADINEGDFVLDVCAAPGGKTFHAADRLKGAGKVLSRDLTEYKTELIE 312 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N DR+H ++ + DA + + D +L D PCS G + R D+ + + + Sbjct: 313 ENKDRMHYENVEVQQWDALEEDESLLESVDVLLADLPCSGLGIMGRKNDIKYQMTEEQLG 372 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A QR++L +VKPGG ++FS C+L+K ++ E ++ + ++P+ + ++ + Sbjct: 373 ELAALQRQILSVVWKYVKPGGQMIFSTCTLNKGENAENIKWIEENTPLHL----VSIEEY 428 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ +G++++ P DGFF +R Sbjct: 429 LPQNLKNRTGSQGYLQLIPG--------EDTCDGFFISKFKR 462 >gi|71736115|ref|YP_272333.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556668|gb|AAZ35879.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326680|gb|EFW82725.1| sun protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331346|gb|EFW87289.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881831|gb|EGH15980.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea str. race 4] Length = 448 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 120/455 (26%), Positives = 200/455 (43%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCAHKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + + + LN L + P + SLPGFAEG VQD +A + Sbjct: 175 VNRRHNSRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALASLQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA- 413 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 -----------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus pseudintermedius ED99] Length = 433 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 191/454 (42%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R +S + V++ ++ L+ D+ L +V T++ +D Sbjct: 4 VRELSLMTIEAVLKDGAYSNLKMNEMLQTYP---LNPADRGLYTELVYGTIKRKLTLDYY 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + +++LL +S+ Q LYLD V +A+++ AV AK+ + VN Sbjct: 61 LKPFVKTKIKG---WVRRLLWMSLYQFLYLDKVPTHALINEAVNIAKK-RGGAQTGNTVN 116 Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +ILR+++ + + +R++ IP W + +G + AI+ + P Sbjct: 117 AILRQMTSQPLPDITAIKKQPERLSIQYSIPTWIIKHWLTHFGADTTEAIAANLLLPGTQ 176 Query: 179 DLTV---KFDIETWAHKLNAVMLP-----TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + V + ++ +L A + L +++ F +G+ +QD S+ Sbjct: 177 TVRVNRTQITVDEAIEQLRAEGFDVQSDTHIDVCLHVSGHGVMTSELFQKGLISIQDKSS 236 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLH 287 + +VLD C+APGGK + V A DV +++ + N+ +LH Sbjct: 237 MFVAEYMELQPGDAVLDSCSAPGGKACHMAEILNDQGTVLATDVHAHKIQLIDHNIRKLH 296 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L ++ DA + FD VL+DAPCS G +R P++ + D+ Q ++ Sbjct: 297 LTGIRAMQHDATQ-PYDQQFDKVLLDAPCSGLGVLRHKPEIKYVITPQDVKGLVDLQLRI 355 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + +K GG +V+S C++++ +++ V+ L+S P E P+ Sbjct: 356 IDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSHP-DFEFDPIEDPRTHEPV----- 409 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ P + DGFF +R+ Sbjct: 410 ---KTLQLLPQDMHA--------DGFFITRVRKK 432 >gi|306825761|ref|ZP_07459100.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432122|gb|EFM35099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 437 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 129/459 (28%), Positives = 203/459 (44%), Gaps = 38/459 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV IV T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSH---LSAADKGLVTEIVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +SV Q+ +LD V D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDKLDNWLYVLLLMSVYQVRFLDKVPDHAVVNEAVELAK--VRKQG 114 Query: 120 FAKLVNSILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 KLVN++LRR+ RE +R + +P W +L+ YG+ER AI + Sbjct: 115 SEKLVNAVLRRILREGWPDIATIKRKNKRDSIAYSLPVWLVSKLKEEYGEERAQAIFKSL 174 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + I +T E L A P L + FAEG +QD S+ Sbjct: 175 LVRNKASIRVTDLSRKEEIKAVLEATDSPLAATGLVKEQGHFAGHDLFAEGAITIQDESS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLD CAAPGGKTA + ++ KVTALD+ +L+ ++ N RL + Sbjct: 235 QLVAPTLDLQGDEQVLDACAAPGGKTAHMASYLTSGKVTALDLYDHKLDLIQENAQRLSV 294 Query: 289 YA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 295 ADRVQTQKLDARKVHEFFGRDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFTSLQEIQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ +++ +VV+ L S P K Sbjct: 355 LEILGSVCQTLRKGGIITYSTCTIVSEENFQVVEAFLESHPEF--------EQVKLEHEC 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + +G I ITP++ G DGFF ++ + Sbjct: 407 KDILKDGCILITPELY--------GSDGFFISQFCKISE 437 >gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 442 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 109/451 (24%), Positives = 195/451 (43%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + ++ + L + + + LS +D+ LV IV T+ ++ Sbjct: 11 ARGQALLIVEDIFDHGAYSNLALKHQLAN---QSLSDKDKALVTEIVYGTISRKITLEWY 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + R + LL +S+ Q+ YLD V +A+V+ AV AK R KLVN Sbjct: 68 LAHYIE-DRDRLDKWVYYLLMLSLYQLAYLDKVPAHAIVNDAVNLAKARTHGRGADKLVN 126 Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+++ + + A +P W ++L + +G++R +AI ++ S Sbjct: 127 AVLRQLTNKPLPDIKSIKRKNKYYAVAYSVPVWLVKKLIDQFGEKRAVAILESLFVRSRA 186 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T + + L + + F G +QD ++ + Sbjct: 187 SIRVTDLAKFDEIKQATGSEQSLLAETGLTKRAGHFAASSYFINGDITIQDETSQLVAPT 246 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 +LD C+APGGKTA + ++ KV ALD+ + +L + N RL + + Sbjct: 247 LDIQGQEMILDACSAPGGKTAHIASYLTSGKVVALDLYEHKLALVNENAKRLGVADRIET 306 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 +D + K FD +LVDAPCS G IRR PD+ + ++ D + Q ++L Sbjct: 307 KVLDAREVHKHFAKDSFDKILVDAPCSGIGLIRRKPDIKYNKEGQDFQQLQEIQLEILSS 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ +++ +V+ K L+ P N + + Sbjct: 367 VCQTLRKGGIITYSTCTIFDEENFQVIDKFLQRHP--------NFEQVTLKHAQADIVKD 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + ITP+ + DGFF +RR+ Sbjct: 419 GCLMITPEQYQ--------TDGFFIGQVRRV 441 >gi|229828532|ref|ZP_04454601.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM 14600] gi|229793126|gb|EEP29240.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM 14600] Length = 429 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 107/460 (23%), Positives = 188/460 (40%), Gaps = 56/460 (12%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + +LS V+ + LL + L +R + + + + +D Sbjct: 1 MNEREIVLQILSAVLEEGAYSHLLLQAVL--DKYAYLDKRQRAFISRLTVGVIERKISLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L+ + + + K ++ LR+ + QILY+D V D A + +V+ R Sbjct: 59 YILNHYSRTPVKKMKPMIRNSLRMGLYQILYMDAVPDSAACNESVKLIARRYRP--LKGF 116 Query: 124 VNSILRRVSREKIE-----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN +LR ++R + E +P+W + +G+E +I + ++P Sbjct: 117 VNGLLRNIARHRQEALSLLKDASPGIRYSMPDWLMKEWSKRFGREGCESICKSFLAPRKT 176 Query: 179 DLTVK---FDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V +E KL +SI L + EG+++VQD S Sbjct: 177 CIRVNLARISVEDLIEKLEGEGVSVLRSEDLDYALYISGYDSIKKLLSYREGLFYVQDLS 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPG-------GKTAQLIVSGAKVTALDVSKRRLEKLRCN 282 + + + VLD+CAAPG K A + S +V A D+++ ++ ++R N Sbjct: 237 SMLVAERAPVRGGSRVLDVCAAPGGKSLHIAEKLACMDRSEGRVLARDLTEDKVARIREN 296 Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + R + DA + +D VL D PCS G I R P++ + D+ Sbjct: 297 IARSQMDNISAQVFDARVDDAASHEAYDIVLADLPCSGLGVIGRKPEIRYRLQPKDLSAL 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q ++L ++VK G +V+S C++ Q++EE ++ L +P Sbjct: 357 AGLQTQILSVVKNYVKAQGSLVYSTCTISGQENEENTERFLAENPDF------------- 403 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +S E +I PD +SG DGFF R Sbjct: 404 ----HLISQE---QILPD--------ASGRDGFFISVFSR 428 >gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785] gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785] Length = 440 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 196/457 (42%), Gaps = 45/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKLADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L+ LL +S Q +L+ V A+ D A + AK+ K N KL Sbjct: 60 QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117 Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR ++ +L++ ++ P+W E L + +G+ I P Sbjct: 118 VNGILRALERQGKILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENETKEILVRSNQPAA 177 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + D E +L L + F G +QDA+ Sbjct: 178 NSIRMTTKESDFEEIKEELKKDTFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F + VLD C+APGGKT Q+ + V ALD+ + +L +R +RLH Sbjct: 238 ASLAVDAFDFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297 Query: 288 LYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +DA Y + FD +LVDAPCS G IRR P++ + + +DI A Sbjct: 298 VSDKVKTKALDARKAKEYFNQGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + GG +V+S C++ ++ E VV++ L+ P EL+P+ Sbjct: 358 QLAILESVSGLLANGGELVYSTCTISYEEDEGVVKQFLKLHP-DFELMPVQVGKLP---- 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P S G DGFF L++ Sbjct: 413 -----KQEMVRIFPS--------SDGSDGFFIAKLKK 436 >gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27] gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27] Length = 428 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 119/433 (27%), Positives = 185/433 (42%), Gaps = 37/433 (8%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88 LD + L RD+ V+ +V LR R+DA+L + L + +LR+ Sbjct: 7 LDQSFER-RTPTLDARDRRWVQELVWGVLRHRERLDAILATRIRGGLSVLDDGVLDILRL 65 Query: 89 SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE--------KIELL 139 Q+L +D V YA + +VE KR KLVN++LRR+ RE + + Sbjct: 66 GTYQLLSMDSVPPYAAIGQSVEAVKRKHG-IGAGKLVNAVLRRIDRERATIEPALPADPV 124 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVML 198 +A P W R + +G + +P + + + A L + Sbjct: 125 DALALQHSHPSWVVGRWVSQFGIAETAQLLALNNTPAPVVVRPHGVQADALAESLTQSDV 184 Query: 199 PTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 T + L P ++ + F G ++VQD +A++ Q V DLCAAP Sbjct: 185 STRRVPLVPESLEITGPVALTEVDAFRRGQFYVQDPAATLVAQYAHVPEGSVVADLCAAP 244 Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLF 307 G K ++ V A D S+ R++++R DRL + Sbjct: 245 GSKALEMARRARLVIAADRSESRVDRMRSGFDRLGIDTTSSNRAMVTLVADATQPSIDPV 304 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DAVLVD PC+ TGT RRHPD W D QR++L + V+P G++++S CS Sbjct: 305 DAVLVDVPCTGTGTFRRHPDARWRLQASDFAVLGALQRQILTAAAAVVRPNGLLIYSTCS 364 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L+ ++++EVV L S P V P + ++ A+ G +R+ P Sbjct: 365 LEAEENDEVVDAFLASHPDFVVEPP------PAGVVSDAVIDRGRLRVLPQ--------Q 410 Query: 428 SGMDGFFAVALRR 440 G DG FAV +RR Sbjct: 411 HGFDGAFAVRMRR 423 >gi|33152966|ref|NP_874319.1| Fmu protein [Haemophilus ducreyi 35000HP] gi|46396801|sp|Q7VKC4|RSMB_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|33149191|gb|AAP96708.1| SUN protein [Haemophilus ducreyi 35000HP] Length = 435 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 129/461 (27%), Positives = 210/461 (45%), Gaps = 44/461 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK ++R +++ ++ V+ SL+ L+ +A + L +D LV+ I R Sbjct: 1 MKHKKTSSRAIAAQIMLQVLDHGKSLSTLIP-----AAQQQLDAKDIPLVQEITFGICRV 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 LPR++A++ ++ L K + LL V + Q+LY+ + +A VD V A + + Sbjct: 56 LPRLEAIIQQLVTKPLKGKSRLVHCLLLVGLYQLLYMRIPVHAAVDEVVN-ATKLVKLDS 114 Query: 120 FAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 F L N +LRR RE+ + ++ PEW L+ Y R + ++ P++ Sbjct: 115 FRALTNGVLRRFLREQQTILAKVDKHWQTLHPEWLVNMLKQVYPNWREIMDANNQRPPMW 174 Query: 178 IDLTVKFDI---------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 I + + + N+ P S+ LP F+ G VQD Sbjct: 175 IRVNTQHCTPQDYSALLGDLAVKTTNSSACLPSSAIQLVNPLSVDKLPYFSRGWATVQDC 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286 A L N +LD CAAPGGKT ++ + V ALD+ + RL ++R NL RL Sbjct: 235 HAQWSATLLAAKNGEMILDACAAPGGKTTHILEQAPQAKVIALDIEESRLVRVRENLARL 294 Query: 287 HLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L A D+ D +FD +L+DAPCS+TG IRRHPD+ W R DI + Sbjct: 295 GLTA-DVRCGDATTPTKWLADDVMFDRILLDAPCSATGVIRRHPDIKWLRQAGDISELVE 353 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q K+L +KP G +V++ CS+ ++ E + + + ++P EL+ ++ K+I Sbjct: 354 LQAKILSALWHRLKPNGTLVYATCSILPAENSEQIIQFITANP-DAELIEMDFNGEKAI- 411 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + P +G DGFF LR+L + Sbjct: 412 ---------MKQFLPQ--------QNGGDGFFYAKLRKLDK 435 >gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392] gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392] Length = 445 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 209/456 (45%), Gaps = 41/456 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + ++ R +++ ++ V+ + SL+ LL + +D L++ I R LP Sbjct: 11 STALSVRAIAAQVILQVLDQGKSLSTLLPEV-----QLQVKPQDLPLLQEITFGICRVLP 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ++ ++ +L L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 66 CLENIIKKLLDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFR 124 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN +LRR REK ++ + ++ PEWF +++ Y R + ++ P+++ Sbjct: 125 GLVNGVLRRFLREKEDILSVVDKHWQTLHPEWFVNKIKKAYPNWREIIEANNQKPPMWLR 184 Query: 180 LTVKFDI----ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIP 233 + + + T K L + + LP F +G VQD +A Sbjct: 185 VNQQQNNTKTYRTLLEKQEIAAFECDNPHALRLAQPLSVSKLPNFEQGAVTVQDLNAQWS 244 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAE 291 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL RL+ A Sbjct: 245 ALLLEPQNGELILDACAAPGGKTTHILEMAPQAKVIALDVEAHRLKRVEENLSRLNQQAT 304 Query: 292 DII-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + + FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 305 VVCGDATEPEKWLSEIGLSGASFDRILLDAPCSATGVIRRHPDIKWLRQETDIAQLVALQ 364 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + +KP GI++++ CS+ ++ + +Q+ L + EL+PL ++ Sbjct: 365 GQILKALWAKLKPNGILLYATCSVLPDENSQQIQRFLAETSN-AELMPLPFEQTENTI-- 421 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I+ P +G DGF+ LR+ Sbjct: 422 -------GIQFLPQ--------ENGGDGFYYAKLRK 442 >gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041] gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041] Length = 448 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 123/467 (26%), Positives = 192/467 (41%), Gaps = 46/467 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M M AR V+ L V R+ L+ L+ D+ L IV TL+ Sbjct: 1 MTNKKMTAREVALTALDRVRRRGAYSNLQLNQLLSKHQ---LNDNDRRLATRIVYGTLQR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ++ L + + ++ LL ++ Q YL V D+AV D +E AK+ N Sbjct: 58 QLTLEYWLQPFVKG--KKLDSWVETLLLTALYQYQYLERVPDWAVTDETIEIAKQW-GNP 114 Query: 119 HFAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDA 171 K V +L V R+ ++ A +P W + L + YG+ + + + Sbjct: 115 GIRKFVTGVLHAVLRQGFPRFDQLRDESERLAVQFSVPRWLVDELVSQYGQSQATRVLQS 174 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVW 223 P + + V D+ T +L A + L ++ FA G Sbjct: 175 VNDPARLVVRVNTAVTDLATVESQLRAAGIEFQKSRVAPNALVITKGELLGSALFATGQI 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278 VQD SA + V VLD CAAPGGKT Q +G +V ALD+ + + + Sbjct: 235 TVQDESAMLAVDSMNVQPGDRVLDACAAPGGKTVQIAERLDPATGGRVDALDIHEHKTKL 294 Query: 279 LRCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 ++ N R+H+ +DA + FD +LVDAPCS G +RR P++ +T+ Sbjct: 295 IQKNASRMHMADRVVTHTLDARRVADEFADETFDKILVDAPCSGIGLLRRKPEIRYTKSL 354 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D K Q +L VK GGI+ +S C++ +Q++E+ VQ+ L + L Sbjct: 355 ADSQKLHKIQGSILNAVAPKVKKGGIITYSTCTILQQENEQTVQEFLAAHSDFRLLTTKT 414 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S K + L+ I P G DGFF L+R+ Sbjct: 415 SRNLKDDRASATLT------ILPADY--------GSDGFFISNLQRI 447 >gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC] gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC] Length = 442 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 109/461 (23%), Positives = 194/461 (42%), Gaps = 44/461 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +AR +S L V++ + L+ S LSQ DQ L +V T+++ Sbjct: 1 MSTSKSARAISLETLIKVLQDKSYSNISLNNSLNHS---DLSQADQNLATKVVYGTIQYR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L ++ L K L+ LL +S+ QI++LD V + AV+D A + AK+ ++ Sbjct: 58 LFLEYQLKGLVRIKLTEK--YLKPLLLMSIYQIVFLDKVPNRAVLDEANKLAKQFGKHHS 115 Query: 120 FAKLVNSILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 V + + R + + ++ ++ +PEW N +G +R + ++ Sbjct: 116 SGYRVVNGILRSFIRRGVILPDAKDEIKYLSVKESMPEWLVNYFANHWGMDRTKKLLESI 175 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWV 225 + ++ D + ++L + + F G + Sbjct: 176 NQSAKNSVRISALCDRDQVFNQLKTEGYEPEWSNLSVNDIILGHGGVSQSDLFKRGKLTI 235 Query: 226 QDAS-ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCN 282 QD + + + +LD C+APGGKT Q+ VTALD+ +++L ++ N Sbjct: 236 QDEAASLVIESFDFDSKEEHILDACSAPGGKTVQMAERVVVGDVTALDIHEKKLHLVKEN 295 Query: 283 LDRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 R+++ I DA F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 296 AKRMNVANKVKIKACDARKVQDVFKPGEFTKILVDAPCSGLGLLRRKPEIRYTKTERDLQ 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q +L +K G +V+S CS+ ++ E VV+K L+ P EL P + Sbjct: 356 NLQKIQLAILESVSPLLKEDGELVYSTCSISVEEDEAVVEKFLKLHP-DFELKPFKLSKL 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + S G ++I PD DGFF + Sbjct: 415 E--------SKTGMLKIMPD--------QDNNDGFFIAKFK 439 >gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pseudoporcinus SPIN 20026] gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus pseudoporcinus SPIN 20026] Length = 440 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 113/459 (24%), Positives = 201/459 (43%), Gaps = 38/459 (8%) Query: 1 MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + AR + + + L+ + + + + +D+ L+ IV T+ Sbjct: 1 MANNWKTKARGKALLAIEDIFDNGAYSNIALNNQLSNHSVQ---DKDKGLITEIVYGTIA 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 ++ L + + + LL +S+ Q+LYL+ + +A+V+ AV+ AK Sbjct: 58 KKITLEWYLSHYVE-DREKLDKWVYYLLMLSLYQMLYLEKIPSHAIVNDAVDIAKNRGYK 116 Query: 118 RHFAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 R K +N+ILR+VS +R + +P W ++L +G +R +AI + Sbjct: 117 RGAEKYINAILRQVSVGNLPSLDSIKRKNKRYSIAYSVPIWLVKKLCEQFGDDRAIAIME 176 Query: 171 A--CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + S I +T + L A L + S F EG+ +QD Sbjct: 177 SLSFHSKASIRVTNSQRFDEVRDYLEAQTSALAPTALTKTTGHFASHAYFQEGLITIQDE 236 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + + +VLD C+APGGKT ++ K+TALD+ + +L +R N +RL Sbjct: 237 TSQLVAPTLAIKGDENVLDACSAPGGKTCHLASYLTTGKITALDIHEHKLTLVRQNAERL 296 Query: 287 H-LYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + +D + FD +LVDAPCS G IRR PD+ + +D D+ Sbjct: 297 GVLDKIETRALDARKVHEVFANDSFDKILVDAPCSGIGLIRRKPDIKYNKDGQDLTALQN 356 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L ++ GGI+ +S C++ +++ +V++K L S N K Sbjct: 357 LQLEILSSVCQTIRKGGIITYSTCTIFDEENFQVIEKFLESHS--------NFEQVKLKH 408 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I +TP+ + DGFF +RR+ Sbjct: 409 TQADIVKDGCILVTPEQYQ--------TDGFFISQVRRI 439 >gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS] gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS] Length = 428 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 195/457 (42%), Gaps = 53/457 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR ++ +L + R S LL+ + L + D+ L + +V TL++ + D Sbjct: 1 MTARELALRVLLELDGMRKS-EELLNRMHEH---AGLGKNDRALAKELVAGTLKYRLQCD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + L+ +LR+ V Q+L LD V A V+ +V+ A++ K + H A+L Sbjct: 57 FIIARFYRHDYAKAATVLKHILRLGVYQLLRLDRVPKSAAVNESVKLARKFKGD-HLARL 115 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR +S+ I+L A + PEW R YG + LA+ Sbjct: 116 VNGLLRNISKATIDLDAWTAEMPESKRLSILYSFPEWLAARWLMRYGPDATLAMLAHGNL 175 Query: 175 PL---YIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 P Y +K + ET + V G R + + P EG+ VQ Sbjct: 176 PPATGYRINRLKANPETLLARPELSDAKRVADADGLDRFFFSKQFALLEPLLKEGLVSVQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 + + + +V D+CAAPGGK+ + + + ++ ALD + ++ ++ N Sbjct: 236 NPAQGQACLMAAPEPGSTVFDMCAAPGGKSTFMAELMENRGRIIALDRTPAKVARIASNA 295 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + E DA + P D +L+DAPC+ TG + R ++ W + + + A Sbjct: 296 SALGITIIEPREGDALTFDPGCAMDTILLDAPCTGTGVLGRRAELRWRTTPEKLRELAAL 355 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + S ++PGG+++++ CS++ +++E + L+ P + Sbjct: 356 QAAMLDRAASLLRPGGVLLYATCSVEPEENELQTEAFLKRHPEFI--------------- 400 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E P G DG FA R+ Sbjct: 401 -----AEASRLTLPG-------SHEGFDGGFAARFRK 425 >gi|189426656|ref|YP_001953833.1| sun protein [Geobacter lovleyi SZ] gi|189422915|gb|ACD97313.1| sun protein [Geobacter lovleyi SZ] Length = 464 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 117/474 (24%), Positives = 188/474 (39%), Gaps = 48/474 (10%) Query: 1 MKSGMNA-------RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53 M A R + L + + L+D E + + D+ L +V Sbjct: 5 MSKQQPATPATGSPRQAAYTTLQRLSGSDLHADDLIDQELSRNQLQG---PDRGLFAELV 61 Query: 54 NVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 LR +D L ++ L R + + LLR+ + Q+ YLD V +A V VE Sbjct: 62 FGVLRRQGTLDHYLKQLVQQPLERLELPVLLLLRLGLYQLRYLDRVPSHAAVHATVELTN 121 Query: 113 RDKENRHFAKLVNSILRRVSREK---------IELLQRIAGISIIPEWFKERLENFYGKE 163 L+N +LR R + + +A +P W E+ + + Sbjct: 122 EIL--PRAKGLINGVLRSYLRRQESLTLPDPARQPAAWLAAAYSLPGWLAEQWLQQFSQN 179 Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVS 214 ++ A + L V + +A L R I Sbjct: 180 EAAGLAAASTEIPPLTLRVNTLRISRSALLERFHAAELAAEPCRFAPEGIQLLQRCQITG 239 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDV 271 LPGF EG++ VQD ++ + L +LD+CAAPGGK L + +TA D+ Sbjct: 240 LPGFDEGLFMVQDEASQLVAHLLAPQTGEQILDMCAAPGGKATHLAQLMNDRGCITATDL 299 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + RR+ ++ + RL L + + D DY FD +L+DAPCS G IRR+P+ Sbjct: 300 NARRIRRICESAQRLGLTSIQAVAADALTSDYLEGLQFDRILLDAPCSGLGVIRRNPEAK 359 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W +I + A Q L+ + +KP G++V++ CS ++ E V++ L P V Sbjct: 360 WRLTPAEISRCAARQHLLIDAAAARLKPAGVLVYATCSTAMEEDETVIKDFLSRHPEFV- 418 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + G++R P G DGFFA LRR++Q Sbjct: 419 ---VENGAQFFPAWTDLFDCSGYLRAWPH--------RHGTDGFFAARLRRVMQ 461 >gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola str. ES4326] Length = 441 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + LN L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHSRDQYLELLNTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSAVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A D + F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 DAELIAADARDTASWWDGTPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL + + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQDGQPAAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|319892211|ref|YP_004149086.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus pseudintermedius HKU10-03] gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus pseudintermedius HKU10-03] Length = 433 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 191/454 (42%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R +S + V++ ++ L+ D+ L +V T++ +D Sbjct: 4 VRELSLMTIEAVLKDGAYSNLKMNEMLQTYP---LNPADRGLYTELVYGTIKRKLTLDYY 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + +++LL +S+ Q LYLD V +A+++ AV AK+ + VN Sbjct: 61 LKPFVKTKIKG---WVRRLLWMSLYQFLYLDKVPTHALINEAVNIAKK-RGGAQTGNTVN 116 Query: 126 SILRRVSREK-------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +ILR+++ + + +R++ IP W + +G + AI+ + P Sbjct: 117 AILRQMTSQPLPDITAIKKQPERLSIQYSIPTWIIKHWLTHFGADTTEAIAANLLLPGTQ 176 Query: 179 DLTV---KFDIETWAHKLNAVMLP-----TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + V + ++ +L A + L +++ F +G+ +QD S+ Sbjct: 177 TVRVNRTQITVDEAIEQLRAEGFDVQSDTHIDVCLHVSGHGVMTSELFQKGLISIQDKSS 236 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLH 287 + +VLD C+APGGK + V A DV +++ + N+ +LH Sbjct: 237 MFVAEYMELQPGDAVLDSCSAPGGKACHIAEILNGQGTVLATDVHAHKIQLIDHNIRKLH 296 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L ++ DA + FD VL+DAPCS G +R P++ + D+ Q ++ Sbjct: 297 LTGIRAMQHDATQ-PYDQQFDKVLLDAPCSGLGVLRHKPEIKYVITPQDVKGLVDLQLRI 355 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + +K GG +V+S C++++ +++ V+ L+S P E P+ Sbjct: 356 IDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSHP-DFEFDPIEDPRTHEPV----- 409 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ P + DGFF +R+ Sbjct: 410 ---KTLQLLPQDMHA--------DGFFITRVRKK 432 >gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str. 1_6] Length = 441 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 122/455 (26%), Positives = 200/455 (43%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPPHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + D + + +L L + P + SLPGFAEG VQD +A + Sbjct: 175 VNRRHDSRDHYLERLRTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEAQPQLGGVVAVDLEAKRLVRVRENLDRLGLN 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A D + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADARDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALASLQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ EV++ L + EL A + Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P ++ G DGF+ L ++ Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437 >gi|239993908|ref|ZP_04714432.1| 16S rRNA m(5)C 967 methyltransferase [Alteromonas macleodii ATCC 27126] Length = 439 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 193/460 (41%), Gaps = 44/460 (9%) Query: 1 MKS-----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK N R + ++ ++ + S L+ + +D ++ + Sbjct: 1 MKPLPLPKQKNLRADCAWVIYQILEQGKSSRECLERVQRRH-----NAKDNAWIQEMSLG 55 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R LP + L +L L K ++ L+ + + Q+ + V+++A V V A Sbjct: 56 VMRRLPLLQHWLRSLLDRPLKGNKKVIEHLILLGLYQLNFSRVSNHAAVGETVAAA-SYL 114 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIA--GISIIPEWFKERLENFYGK--ERVLAISDA 171 LVN++LR RE + S +P+W + +EN YG E+V ++A Sbjct: 115 NAAGLKGLVNAVLRNFQRENLADKPVDDAIINSGLPKWLFKAIENAYGDDAEQVRNETNA 174 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWV 225 ++ + + L+ + + I +LPGF +G + V Sbjct: 175 MAPIWLRVNKLQTSLAAFTQALDKAGVEYTLSANHADAVILTKRVDITALPGFEKGHFAV 234 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCN 282 QD +A + N +LD CAAPGGKT ++ ALD RL+++ N Sbjct: 235 QDGAAQLAAHYLKPQANERILDCCAAPGGKTGHIVECAPDTQYVLALDADATRLKRVEEN 294 Query: 283 LDR--LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + R + + + + K FD +L+DAPCS+TG IRRHPD+ W R +DI Sbjct: 295 MTRLKHTVDIKQGDAANPDTWWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDNL 354 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QR++L +KPGG ++++ CS+ +++ +Q+ L +P L P+ Sbjct: 355 AQLQRRILDTLWGLLKPGGTLLYATCSILPKENMAQIQQFLSDTPDAT-LSPILKTETVD 413 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP + MDGF+ L + Sbjct: 414 KP---------GRQITPGEQQ--------MDGFYYARLVK 436 >gi|239631985|ref|ZP_04675016.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066670|ref|YP_003788693.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str. Zhang] gi|239526450|gb|EEQ65451.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439077|gb|ADK18843.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str. Zhang] Length = 446 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 185/465 (39%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ LS V + LD L+ RD L+ IV ++ Sbjct: 1 MTPN-NPRLLAVETLSRVTGQGGYSNLTLDHVINSHK---LTPRDAGLLTNIVYGVIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + + ++ LL +V Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDFYLAPFIKG--RKLDNWIRCLLDTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR R IA S P W E+L G+ + AI + Sbjct: 114 IAKFVTGVLRNAQRTGFPDPAAIADPVKRLSIESSTPVWLVEKLTAQLGEPKTRAILNVI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + L V T A L ++ I L + F +G + Sbjct: 174 NVPAHASLRVNTTKITPAALLASLKPEFPDLKESPLTPIGLIAPSGHLAGTSAFVKGEYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDIQPGDVVLDACAAPGGKTTHIAQYLDPKQGGQVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L +DA FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 NKNAKRLGLTDRIHAQVLDARKVATTFSANSFDKILVDAPCSGLGLIRRKPEIKYTKTPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D Q +L +K GG + +S C++ K+++++VV + L + P ++ Sbjct: 354 DPAHLQQIQLAILNSVAPTLKIGGRLTYSTCTMVKEENQDVVAQFLAAHPEFEQVSVPTL 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A A +++ PD + DGFF +L R Sbjct: 414 KPLHKAHSAPA------LQLFPDDYD--------TDGFFIASLIR 444 >gi|262182499|ref|ZP_06041920.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 99/468 (21%), Positives = 149/468 (31%), Gaps = 44/468 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +L V L + LS RD + TLR +DAV Sbjct: 12 PRAVAFEVLQRVEADDAFANLTLPKAVSAN---NLSGRDAAFSTELTYGTLRSEGVLDAV 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L + LR+ Q+LY V +A VD V + + N Sbjct: 69 IATCASRGLEAIAPDVLTALRMGTYQVLYTRVEAHAAVDTTVRLVEA-AGHEKAKGFANG 127 Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLE-------------NFYGKE 163 I+R ++R A PEW N Sbjct: 128 IMRTITRTPAHEWLDKLAPQEEVAAVAFRHAHPEWIARSFGRALGLLDTGDSKLNAEQTT 187 Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 + +A + L + E A + SL + Sbjct: 188 ELERALEADSERPLVHLVARPGEISAEELALITGCEEGHYSPYAVYLEQGDPGSLEPVRQ 247 Query: 221 GVWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKR 274 + VQD + + + + LDLCA PGGK A + A +D + Sbjct: 248 KLAAVQDEGSQLIARAVTEAELIGEDTGRWLDLCAGPGGKAALMGAIARIEGAEVDAVEV 307 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + + + D FD VLVD PCS G +RR P+ W + Sbjct: 308 SPHRATLVEKTVGDLPVRVHRADGRAPGLSAGFDRVLVDVPCSGLGALRRRPEARWRKTE 367 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 DI + Q +LL + FV+PGG+VV+S CS D +++ +V L E+ Sbjct: 368 SDIAELNQLQSELLESALEFVRPGGVVVYSTCSPDLRETRGIVDAALERHGAGAEVRIEE 427 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L E ++ P G D F LRR+ Sbjct: 428 LDARDVLPEMGDLGSELSAQMWPH--------RHGTDAMFFAVLRRVA 467 >gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida str. Pm70] gi|46397017|sp|Q9CKP7|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70] Length = 446 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 205/456 (44%), Gaps = 43/456 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ++ R +++ ++ V+ + SL+ L+ + +D L++ I R LPR++ Sbjct: 15 LSTRAIAAQIILQVLDQGKSLSTLIPDT-----QHQVKTQDLPLLQEICFGVCRVLPRLE 69 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ ++ L K + LL V + Q+LY + +A VD V A + HF LV Sbjct: 70 LIIKQLVDKPLKGKTRIVHCLLLVGLYQLLYTRIPAHAAVDEVVN-ATTALKAEHFRGLV 128 Query: 125 NSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 N +LRR RE+ + ++ P+W RL+ Y R + ++ P+++ + Sbjct: 129 NGVLRRFLREQETLLVKVDKHWHTLHPDWLVNRLKEAYPNWREIVEANNHKPPMWLRVNQ 188 Query: 183 K-FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQL 236 + ET+ L + P ++ LP F EG VQD +A L Sbjct: 189 QKNSTETYRTLLAEQGIEAEKADNPCALRLLQPVAVSQLPAFHEGAVSVQDVNAQWSALL 248 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD CAAPGGKT A V ALDV RL+++ NL R+ A +I Sbjct: 249 LAPENGELILDACAAPGGKTTHILEQAPQAHVVALDVEATRLKRVHENLARMQQQAT-VI 307 Query: 295 EMDAFDYCPKKL--------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 DA FD +L+DAPCS+TG IRRHPD+ W R DI Q++ Sbjct: 308 CGDATQPAQWLKQLSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQ 367 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + +KP GI++++ CS+ +++ +++ L ++ + +L PL + Sbjct: 368 ILQALWTVLKPNGILLYATCSVLPEENALQIEQFL-TNNVDAKLEPLPFTAVEGSV---- 422 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P +G DGF+ LR+++ Sbjct: 423 -----GYQFLP--------TENGGDGFYYAKLRKVV 445 >gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001] gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001] Length = 446 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 196/465 (42%), Gaps = 46/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N RL++ L+ VM K LD L RD L+ +V ++ Sbjct: 1 MTPN-NPRLLAVQTLTRVMGKGGYSNLTLDHVITKYQ---LDSRDAGLLTNVVYGVIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++ LL+ +V Q+ YLD V AV + E AK+ ++ Sbjct: 57 LTLDYLLAPFVKN--RQLDTWVRCLLQTAVYQLQYLDKVPARAVFFDSTEIAKK-LGHQG 113 Query: 120 FAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFKERLENFYGKERVLAISDAC 172 AK V +LR+ R IA S P W ++L+ G+ + I A Sbjct: 114 VAKFVTGVLRQAQRSGYPDPMTIADPIQRLAITSSTPVWLVKKLQAQLGETKTAKILAAI 173 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWW 224 P + + V T A L A+ L + L + FA+G++ Sbjct: 174 NQPAHASIRVNTTKTTAAALLKALQLQFPALKESPLTPVGLVAPGGHLAGTREFADGLYT 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKL 279 +QD S+ + VLD CAAPGGKT + G +VTALD+ ++ + Sbjct: 234 MQDESSMLVAPSLDVQPGDQVLDACAAPGGKTTHIAQYLDPDQGGRVTALDLHANKVRLI 293 Query: 280 RCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + N RL L MDA + FD +LVDAPCS G IRR P++ +T+ + Sbjct: 294 QQNAKRLDLDDRVAAQVMDARQVAANFAAESFDKILVDAPCSGLGLIRRKPEIKYTKQPE 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+ Q +L +K GG + +S C++ K+++++VV L + P E VP+ + Sbjct: 354 DLQHLQKIQLAILDSVAPTLKIGGRLTYSTCTMVKEENQDVVAHFLATHP-EFEQVPVLT 412 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ PD + DGFF +L R Sbjct: 413 LKPLAKTHGAPA-----LQLFPDDYD--------TDGFFIASLIR 444 >gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii ATCC 33200] gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii ATCC 33200] Length = 438 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 197/457 (43%), Gaps = 45/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELIKH---DLKLADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L+ LL +S Q +L+ V A+ D A + AK+ K N KL Sbjct: 60 QLKPLIKTKLR--DSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKKYSKRNSGSYKL 117 Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR ++ +L++ ++ P+W E L + +G+ I P Sbjct: 118 VNGILRALERQGKILPPTNDLVEYLSIKESFPKWLVEYLLDHFGENETKKILVRSNQPAA 177 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + D E +L L + F G +QDA+ Sbjct: 178 NSIRMTTKESDFEEIKEELKKDTFSFEESSLTPHNLNLNKGGVAQTALFKNGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F + VLD C+APGGKT Q+ + V ALD+ + +L +R +RLH Sbjct: 238 ASLAVDAFDFKGSEQVLDACSAPGGKTVQIAENLTTGSVIALDIHENKLRLVRNAAERLH 297 Query: 288 LYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +DA Y ++ FD +LVDAPCS G IRR P++ + + +DI A Sbjct: 298 VSDKVKTKALDARKSKEYFNQRQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLAKI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + GG +V+S C++ ++ E +V++ L+ P EL+P+ Sbjct: 358 QLAILESVSGLLANGGELVYSTCTISYEEDEGIVKQFLKLHP-DFELIPVQVGKLP---- 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P S G DGFF L++ Sbjct: 413 -----KQEMVRIFPS--------SDGSDGFFIAKLKK 436 >gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40] gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus degradans 2-40] Length = 445 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 116/453 (25%), Positives = 200/453 (44%), Gaps = 37/453 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N R +++ L+ V+ SL+ +LD + +++ L++ + +LR P+ID Sbjct: 10 TNLRALAAMTLAPVISGSRSLSTILDKAL-----DAVEPKERPLMQTLCLGSLRVFPKID 64 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + +L + + L+ + + Q+ YL D+A + VE AK + +KL+ Sbjct: 65 LIARKLLQKPFKSRDNDVYALIVLGIYQMDYLRTPDHAAIGETVEAAKALNKP-WASKLI 123 Query: 125 NSILRRVSRE----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR RE + +L +A P+WF + + + ++ AI A I L Sbjct: 124 NGVLRNYQREKVALQHKLNGSMAFQHAHPQWFIDLVRADWPQDW-QAILAANNQQPPITL 182 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 D +T L+ + I +LPGF EG + VQD +A Sbjct: 183 RANKRHCDQKTLLEALHKAEVGAHLCEYSRDGITLEGASDIPALPGFNEGHFSVQDEAAQ 242 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLY 289 + L N VLD C+APGGK + +T L+ R+ ++ NL RL Sbjct: 243 LSASLLDLQANQRVLDCCSAPGGKAGHICEQANNIDLTCLESDASRMPRVEQNLARLGHT 302 Query: 290 AEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A+ I+E + + FD +L+DAPCS+TG IRRHPD+ R D+ K A Q ++ Sbjct: 303 AKLIVEDANEVDSWWDGVPFDRILLDAPCSATGVIRRHPDIKLLRRPSDLAKLAQLQAQI 362 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + PGG ++++ CS+ KQ++E +V + +PL++ + + Sbjct: 363 LRSVWRTLAPGGKLLYATCSVLKQENENIVSHFVSE-QNDARHIPLDNNQPVTWGVERPF 421 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P +G DGF+ L + Sbjct: 422 ----GRQLFPQ--------ENGHDGFYYALLEK 442 >gi|260574499|ref|ZP_05842503.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2] gi|259023395|gb|EEW26687.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2] Length = 427 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 146/420 (34%), Positives = 211/420 (50%), Gaps = 20/420 (4%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 + L +L LS D+ + + LR + D VL L P Sbjct: 25 EQGAMLGQVLAD--PAGPLTGLSPSDRARAQRLALAVLRHIEPADRVLKPHLRKEPPE-- 80 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 +++ LR++V ++ A + VV+ AV + K H A LVN++LR+V+ Sbjct: 81 -AVRIALRLAVVELAVEHAAAHGVVNAAVSLMRLGKRTTHMAGLVNAVLRKVAEVPEPFA 139 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199 +P W ++ L + YG+E+V A+ ID++VK E A LP Sbjct: 140 GLPPQR--LPFWLRKPLVDTYGREQVAAMEAVQALAPPIDISVKPGAE--VAIPGAEALP 195 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 TG +RL + + +LPGFAEG WWVQDA+A++ V L VLDLCAAPGGKT QL Sbjct: 196 TGSLRLPPQVQ-VSNLPGFAEGQWWVQDAAAALAVGLLAPRPGERVLDLCAAPGGKTLQL 254 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 +GA+V ALD+S RL +LR NL R L A +++ DA + P FDA+L+DAPCS+T Sbjct: 255 AAAGAQVLALDISAPRLVRLRDNLARCGL-AAEVVAADALVWQPAAAFDAILLDAPCSAT 313 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GTIRRHPD+ + +D D+ + Q L+ + + ++KPGG +VF CSL + E + Sbjct: 314 GTIRRHPDLPFVKDGSDLPQVLALQAALIDRALGWLKPGGRLVFCTCSLLPDEGEAQLAG 373 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P V P ++ G +R+ PD + GMDGFF LR Sbjct: 374 ALARHPGLVVERPDLPGV-----EPAWITETGGLRLRPDYWAE----RGGMDGFFMARLR 424 >gi|322515643|ref|ZP_08068621.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976] gi|322118294|gb|EFX90577.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976] Length = 435 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 128/459 (27%), Positives = 206/459 (44%), Gaps = 45/459 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK N R +++ ++ V+ + SL+ LL A L +D LV+ I R Sbjct: 1 MKNKKQNTRAIAAQIILQVLDQGKSLSSLLPE-----AQTQLDPKDVPLVQEITFGICRV 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 LPR++ V+ ++ + K + LL V + Q+LY+ V +A VD V A + + Sbjct: 56 LPRLELVIKQLVAKPIKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKVLKLDS 114 Query: 120 FAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 F L N +LRR RE+ ++ + ++ P+WF R++ Y R + ++ P++ Sbjct: 115 FRALTNGVLRRFLREQAQILAVVDKHWQTLHPDWFVNRIKKVYPHWREIVEANNQRPPMW 174 Query: 178 IDLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 I + + N+ L E P + L F +G VQD Sbjct: 175 IRANQQHIKAQDYAVLLGELVAKNSENSTACVPDCAILLENPVPVAKLMHFEKGWATVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDR 285 A +L G N +LD CAAPGGKT ++ A+V ALD+ + RL+++R NL R Sbjct: 235 VHAQWSAELLGAKNGELILDACAAPGGKTTHILEKALQAQVIALDIEENRLKRVRENLTR 294 Query: 286 LHLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L A +I D P +FD +L+DAPCS+TG IRRHPD+ W R DI A Sbjct: 295 LG-QAAKVICGDASKPQEWLEPDVMFDRILLDAPCSATGVIRRHPDIKWLRKEQDIAGLA 353 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q K+L +KP G+++++ CS+ +++E+ + + + K + Sbjct: 354 ELQSKILHALWQRLKPNGVLLYATCSILPEENEQQINRFVAQ-----------QTDAKLV 402 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +M + P G DGFF L + Sbjct: 403 EMDFNGKKTAMKQFFPQ--------EKGGDGFFYAKLVK 433 >gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis SK119] gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis subsp. hominis C80] gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis SK119] gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus hominis subsp. hominis C80] Length = 435 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 96/454 (21%), Positives = 186/454 (40%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ + ++ ++ + D+ L +V T++ +D Sbjct: 5 VRDLAFQSIQDILNDNAYSNLKINEVINQYNIATV---DKALFTELVYGTIKRKMTLDFY 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + ++QLL +S+ Q ++LD + ++A+++ AV AKR + +H +VN Sbjct: 62 LKPFVKTRIKG---WVRQLLWMSLYQYVFLDKIPNHAIINEAVNIAKR-RGGQHNGNIVN 117 Query: 126 SILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +ILR + QR+ IP W E YG E I+ + + Sbjct: 118 AILRHIFKSDLPTLETIKNEKQRMTIEYSIPRWIIEHWITHYGIETTHKIAKSFLVQSAS 177 Query: 179 DLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASA 230 + V ET + L L + ++ F +G+ +QD S+ Sbjct: 178 TVRVNTSRTDVETISKALLQEGYHVDIDQLIPYCLHLTGKPVIESRAFKDGLISIQDKSS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + L + ++LD C+APGGK + S V A D+ K ++ ++ N+ +L Sbjct: 238 MLVGYLMDVQKDDTILDACSAPGGKACHMAELLASTGHVDATDIHKHKIGLIKENIKKLK 297 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L + DA + +D +LVDAPCS G ++ P++ + + D I Q + Sbjct: 298 LKNVSTFDHDATKPYSEL-YDKILVDAPCSGLGVLKHKPEIKYVQSKDSINDLVEIQLSI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +++S C++++ ++E V+ L+ + ++ I + Sbjct: 357 LDNVKHNLKPGGSLIYSTCTIEQMENENVIYTFLKENKDF---------EFELITHPITG 407 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 408 EKVKTLQILPQDF--------NSDGFFITKIKRK 433 >gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393] gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393] Length = 453 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 121/456 (26%), Positives = 222/456 (48%), Gaps = 36/456 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + ++ R +++ ++ V+ + SL+ L+ A + +D L++ I R LP Sbjct: 14 TTALSTRAMAAKVILQVLDEGKSLSTLIPE-----AQSSVKAQDLPLLQEICFGICRVLP 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R++ ++ ++ L K + LL V + Q+LY+ + +A VD V A + ++ F Sbjct: 69 RLEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRIPAHAAVDEVVN-ATKSLKSDSFR 127 Query: 122 KLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN +LRR RE+ ++ + ++ P+WF +L+ Y R + ++ P+++ Sbjct: 128 GLVNGVLRRFLREQDDILAIVDKHWQTLHPDWFVNKLKKSYPNWREIIDANNQKPPMWLR 187 Query: 180 LTVK-FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIP 233 + + +ET+ L A T + ++ +LP FAEG VQD A Sbjct: 188 VNTQKNSLETYRTLLAAQQTETQVTSHPQALGLTQPTAVQNLPLFAEGGVTVQDLHAQWA 247 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L N+ +LD CAAPGGKT ++ A V ALDV + RL++++ NL R+ A Sbjct: 248 ALLLQPQNHEVILDACAAPGGKTTHILELAPQADVMALDVEENRLQRVKENLARMQQQAT 307 Query: 292 DII--EMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + + K FD +L+DAPCS+TG IRRHPD+ W R DI + Q Sbjct: 308 VVCGDAANPQAWLDKLGKSAVRFDRILLDAPCSATGVIRRHPDIKWLRKEADIKQLVALQ 367 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++KP G+++++ CS+ +++ + +++ L+++P +L+PL+ D+ Sbjct: 368 GQILDALWHYLKPNGVLLYATCSVLAEENSQQIERFLQNTP-DAQLLPLDL----PPDVL 422 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + G DGF+ L + Sbjct: 423 ERNQSAVGFQFIPQI--------DGGDGFYYAKLVK 450 >gi|116629419|ref|YP_814591.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC 33323] gi|311110932|ref|ZP_07712329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri MV-22] gi|116095001|gb|ABJ60153.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC 33323] gi|311066086|gb|EFQ46426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri MV-22] Length = 438 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 120/457 (26%), Positives = 192/457 (42%), Gaps = 45/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L LL +S Q +L+ V A+ D A + AK+ K+N KL Sbjct: 60 QLKPLIKTKLR--DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKKFAKKNSGSYKL 117 Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR +V L+ ++ P+W E L + +G+++ I P Sbjct: 118 VNGILRALERQGKVLPAPDNLVDYLSIKESFPKWLVEYLLDNFGEDQTKEILVRSNQPAA 177 Query: 178 IDLTVKFDIETWAHKLNAVML--------PTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + + + A+ L + F +G +QDA+ Sbjct: 178 NSIRMAVEEDKFEEIKEALKKDGFDFKESCLTAHNLNLNKGGVAQTNLFKDGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F + VLD C+APGGKT Q+ V ALD+ + +L ++ RLH Sbjct: 238 ASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKLTTGNVIALDIHENKLRLVKNAAKRLH 297 Query: 288 LYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +DA FD +LVDAPCS G IRR P++ + +DI A Sbjct: 298 VSDKVKTKALDARKAQEYFTAGQFDKILVDAPCSGLGLIRRKPEIRCEKSLNDIKNLARI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + GG +V+S C++ ++ E VV + L+ P ELVP+ Sbjct: 358 QLSILENISGLLTAGGELVYSTCTISLEEDEGVVNQFLKLHP-DFELVPVQVGKLP---- 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P + G DGFF L++ Sbjct: 413 -----KQNMVRIFPS--------ADGSDGFFIAKLKK 436 >gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075] gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571] gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075] Length = 454 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 200/460 (43%), Gaps = 44/460 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +AR +S L V++ L+ S LS DQ L IV T+++ Sbjct: 14 STNKSARAISLETLIKVLQNGSYSNISLNNSLKHS---DLSIADQNLATRIVYGTIQYRL 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L +L + + K L+ LL +S+ QI++LD V + AV+D A + AK+ ++ Sbjct: 71 FLEYQLTGLLKTKITEK--YLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSS 128 Query: 121 AKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 V + + R ++ + ++ ++ +PEW + L + +G ++ ++ + Sbjct: 129 GYRVVNGILRAFIRRGVILPDEKDTIKYLSIKESVPEWLVKYLIDNWGMQKAQSVLSSIN 188 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQ 226 P + ++ D +L L I F +G +Q Sbjct: 189 DPAKNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLNDAVLSHGGISESDLFEQGKLIIQ 248 Query: 227 DASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNL 283 D +AS + F VLD C+APGGKT Q+ VTALD+ +++L ++ N Sbjct: 249 DEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIAENIHGDVTALDIHEKKLRLVKENA 308 Query: 284 DRLH-LYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 R+H L DA F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 309 RRMHVLDKVTTKACDARKAHEIFKAGEFTKILVDAPCSGLGLLRRKPEIRYTKSLQDLRN 368 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L +K G +V+S CS+ +++EEVV++ LR P EL P + + + Sbjct: 369 LQKIQLTILDSISKLLKAEGELVYSTCSISMEENEEVVKRFLRIHPG-FELKPFSLSKLE 427 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S G ++I PD G DGFF R Sbjct: 428 --------SKTGMLKIMPD--------QDGNDGFFIAKFR 451 >gi|227833013|ref|YP_002834720.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium aurimucosum ATCC 700975] gi|227454029|gb|ACP32782.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium aurimucosum ATCC 700975] Length = 531 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 99/468 (21%), Positives = 149/468 (31%), Gaps = 44/468 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +L V L + LS RD + TLR +DAV Sbjct: 75 PRAVAFEVLQRVEADDAFANLTLPKAVSAN---NLSGRDAAFSTELTYGTLRSEGVLDAV 131 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L + LR+ Q+LY V +A VD V + + N Sbjct: 132 IATCASRGLEAIAPDVLTALRMGTYQVLYTRVEAHAAVDTTVRLVEA-AGHEKAKGFANG 190 Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLE-------------NFYGKE 163 I+R ++R A PEW N Sbjct: 191 IMRTITRTPAHEWLDKLAPQEEVAAVAFRHAHPEWIARSFGRALGLLDTGDSKLNAEQTT 250 Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 + +A + L + E A + SL + Sbjct: 251 ELERALEADSERPLVHLVARPGEISAEELALITGCEEGHYSPYAVYLEQGDPGSLEPVRQ 310 Query: 221 GVWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKR 274 + VQD + + + + LDLCA PGGK A + A +D + Sbjct: 311 KLAAVQDEGSQLIARAVTEAELIGEDTGRWLDLCAGPGGKAALMGAIARIEGAEVDAVEV 370 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + + + D FD VLVD PCS G +RR P+ W + Sbjct: 371 SPHRATLVEKTVGDLPVRVHRADGRAPGLSAGFDRVLVDVPCSGLGALRRRPEARWRKTE 430 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 DI + Q +LL + FV+PGG+VV+S CS D +++ +V L E+ Sbjct: 431 SDIAELNQLQSELLESALEFVRPGGVVVYSTCSPDLRETRGIVDAALERHGAGAEVRIEE 490 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L E ++ P G D F LRR+ Sbjct: 491 LDARDVLPEMGDLGSELSAQMWPH--------RHGTDAMFFAVLRRVA 530 >gi|24378967|ref|NP_720922.1| putative RNA-binding Sun protein; rRNA methylase [Streptococcus mutans UA159] gi|24376856|gb|AAN58228.1|AE014894_5 putative RNA-binding Sun protein; possible rRNA methylase [Streptococcus mutans UA159] Length = 437 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 200/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L+ + K L LSQ D+ L+ +V TL ++ Sbjct: 8 ARSGALFVLTEIFDKTAYSNIALRHYLSKHK---LSQADRSLLTELVYGTLTRKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + + LL +S+ QILYLD + +A+V+ AV+ AK NR KLVN Sbjct: 65 LAHYIE-DRNKLETWIYYLLMLSLYQILYLDKIPQHAIVNEAVDLAKS--RNRGAEKLVN 121 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ R+K +R + +P W +++ + +G++R ++I + S Sbjct: 122 AVLRQFLRQKRPDITVIKRKNKRYSITYSVPVWLVKKMIDQFGEDRAISILKSLLVRSKA 181 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I + IE A A L + F +G +QD S+ + Sbjct: 182 SIRVVNPDQIEVIAKATGAKKSVLSPCGLVKASGQFFDSDLFKQGKITIQDESSQLVAPT 241 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 N +VLD C+APGGK + ++ ++ ALD+ +L+ ++ N DRL Sbjct: 242 LAIKGNETVLDACSAPGGKAVHIASYLTTGQIIALDLYDHKLKLIKDNADRLKAANYIKP 301 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D Y K FD +LVDAPCS G IRR PD+ + +D+ D Q ++L Sbjct: 302 QKLDARKVHKYFAKDTFDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDS 361 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +K GGI+ +S C++ ++++ V+++ L P N K + + Sbjct: 362 VCQTIKKGGIITYSTCTIFAEENQMVLKQFLEQHP--------NFEQVKLNHKKKDIVVD 413 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + ITP+ DGFF ++R+ Sbjct: 414 GCLLITPEQYL--------TDGFFISQVKRI 436 >gi|331017689|gb|EGH97745.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 448 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 197/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + L L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ- 412 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P ++ G DGF+ L ++ Sbjct: 413 ----------PH-GRQLLAQQGGHDGFYYAKLIKIA 437 >gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23] gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23] Length = 449 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 116/467 (24%), Positives = 194/467 (41%), Gaps = 47/467 (10%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK+ NAR ++ L V+ +D L+ +D+ L I+ L Sbjct: 1 MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYP---LADKDRRLATNIIYGVL 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 + ++ L+ + R ++ LL ++ Q YL V D+AV D ++E AKR + Sbjct: 58 QHKLTLEYWLNGFVQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKR-RG 114 Query: 117 NRHFAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 N K V +L R+ E R++ + +P W L YG+E I Sbjct: 115 NPGIRKFVTGVLHAILRKGLPDLRQINERDLRLSIENSVPRWLVNELTREYGEEDTEKIL 174 Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEG 221 + P + + V D+ T L+A + ++ + I+S F G Sbjct: 175 QSINEPAHQVIRVNTAKTDLPTVKQALDAAGIEYQESQVAQNALVITKGEIISSDLFKNG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLE 277 +QD SA + V+ VLD CAAPGGKT Q+ V ALD+ + ++ Sbjct: 235 EITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALADEDGHVDALDIHQHKVR 294 Query: 278 KLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + A + + + FD +LVDAPCS G +RR P++ +T+ Sbjct: 295 LIEKNARRLGVEKRVTAHALNAREVDQLFDDENFDKILVDAPCSGIGLLRRKPEIRYTKT 354 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 D + Q +L + VK GGI+ +S C++ +Q++++ VQ L P + Sbjct: 355 LSDSKQLHKIQLAILNAVAAKVKKGGIITYSTCTILRQENDDTVQAFLAEHPEFALVKTT 414 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + K + L+ I P + DGFF +L++ Sbjct: 415 TARKVKDTRHSPTLT------ILPSDFDS--------DGFFISSLKK 447 >gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435] gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 435 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 101/454 (22%), Positives = 181/454 (39%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ + + ++ +S D+ L +V T++ +D Sbjct: 5 VRELAFQTIQEIFNDYAYSNLRINEVLSTG---DVSDIDKPLYTELVYGTVKRKMTLDFY 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + ++QLL +S+ Q +YLD V ++A+++ AV AK + H +VN Sbjct: 62 LRPFVKTKIKS---WVRQLLWMSLYQYIYLDKVPNHAIINEAVNIAK-HRGGPHNGNVVN 117 Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +ILR + R QR+A IP+W E YG E ++ + Sbjct: 118 AILRTIFRSELPSLESIKNDKQRMAVEYSIPKWIIEHWITHYGVETTRKMASSFFDQTAG 177 Query: 179 DLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + V + L I+ F G +QD S+ Sbjct: 178 TVRVNTSKNKVEDVVSSLQSEGYEVEVDELIPYCLHLKGHPIIESSNFKNGNISIQDKSS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 L G N +LD C+APGGK + V A D+ K ++ ++ N+ +L Sbjct: 238 MFVGYLMGVEENDVILDACSAPGGKACHIAELLAPSGHVDATDIHKHKIGLIKENIVKLQ 297 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L + DA K ++D +LVDAPCS G +R P++ + + DI Q ++ Sbjct: 298 LNNIKAFDHDATK-PYKDVYDKILVDAPCSGLGVLRHKPEIKYVQTQQDIQDLVELQLEI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG +V+S C++++ ++E V+ L+++ + + + + Sbjct: 357 LDNVKDNLKPGGTLVYSTCTIEQLENENVIYTFLKNNKDFEFELMTHPVTGEQV------ 410 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I+I P DGFF ++R Sbjct: 411 ---KTIQILPQDF--------NSDGFFITKIKRK 433 >gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus fermentum CECT 5716] Length = 448 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 117/466 (25%), Positives = 195/466 (41%), Gaps = 44/466 (9%) Query: 1 MKSGMN----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M AR ++ L V L+ LS D+ LV A+V T Sbjct: 1 MTKKQAQLTGARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGT 57 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L+ +D L + + + ++ LL +++ Q YLD V ++A D A+E AKR Sbjct: 58 LQHQRTLDYWLSPFIAG--KKVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRG 115 Query: 116 EN---RHFAKLVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 R ++++ILR + + QR+A + +P+W + L YG + A++ Sbjct: 116 NPGVRRFVTGVLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALA 175 Query: 170 DACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEG 221 P I L V T + L +++ F G Sbjct: 176 KVINEPARISLRVNLAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKL 279 V +QD SA + V+ + VLD CAAPGGKT Q+ + +V ALD+ + ++ + Sbjct: 236 VVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTDGEVYALDIHRHKVGLI 295 Query: 280 RCNLDRLHLYA-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N R+ + ++DA + + FD +LVDAPCS G +RR P++ + + Sbjct: 296 EKNAQRMGVDDRVFARQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLG 355 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D + Q +L + VK GGI+ +S C++ +Q+++E V + L+ P + Sbjct: 356 DSQRLHQIQGAILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTA 415 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K A L+ + P G DGFF L+R+ Sbjct: 416 RMLKDNRQAQTLT------LLPSDY--------GSDGFFISNLQRV 447 >gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367] gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367] Length = 447 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 201/465 (43%), Gaps = 45/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M R ++ L+ V L+ LS D+ V +V T++ Sbjct: 1 MTKNQTPRALAVEALTRV-AGGAYSNLQLEQTLESHR---LSDVDRRFVTNLVYGTIQHQ 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + ++ L V++ Q LYLD V A+ + A++ AK D+ + Sbjct: 57 LTLEYYLSKFI-KPQQKVLPWVKMTLMVALYQELYLDRVPKRAIFNEAIQLAK-DRGHEG 114 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + V +L + R+ + ++R++ +P W L+ G+++ + I Sbjct: 115 IRRFVTGVLHAIDRQGLPDLAQIKDPIERLSLQYSVPTWLITALQEQVGEDKTMQILATI 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP--------GFAEGVWW 224 P + + T A+ + ++ + L FA+G Sbjct: 175 NQPAAQSIRANVAVTTAEAVQAALAAEGYQVTPSQVAANAFRLDDKAANQSALFADGAIT 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKL 279 +QD SA +PV+ VLD CAAPGGKT Q SG KVTALD+ +++++ + Sbjct: 235 IQDESAMLPVEALQLRPGDQVLDACAAPGGKTTQIAAQLDAHSGGKVTALDLHEKKVKLI 294 Query: 280 RCNLDRLHLY----AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N +RLH+ A + D PKK FD +LVDAPCS G IRR P++ + + Sbjct: 295 EANAERLHVTDRVDAVALDARKIDDQFPKKQFDRILVDAPCSGLGLIRRKPEIRYEKTPQ 354 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI + Q +L +KP GI+V+S C++ +++EVV + L + P E P+ Sbjct: 355 DIQQLQRVQLDILNAVSKKLKPNGILVYSTCTILDTENDEVVAQFLATHP---EFSPMRV 411 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++I + ++I PD + DGFF A RR Sbjct: 412 TTAQNIKSDRSTD---TLKIYPDDFDS--------DGFFVSAFRR 445 >gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittHH] gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittHH] Length = 450 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 216/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF ++L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+PL + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAH-ADAELLPLPVSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus capitis SK14] gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus capitis SK14] Length = 435 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 196/457 (42%), Gaps = 45/457 (9%) Query: 5 MNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 MN+ R + + ++ + ++ + ++ D+ L +V T++ + Sbjct: 2 MNSVRAHAFETIQHILIEGAYSNLKINEVLSSNI---IADVDRNLFTELVYGTIKRKYTL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D +L + + + ++QLL +S+ Q +YLD V D+A+++ AV+ AK+ + H Sbjct: 59 DYILKPFVKTKIKG---WVRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGH-HNGN 114 Query: 123 LVNSILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN ILR + R ++ Q RIA +P+W YG I+ + ++P Sbjct: 115 IVNGILRSMMRSELPHFQEIKDDKKRIALEYSLPKWLVNHWVTHYGLVTTEEIAQSLLAP 174 Query: 176 LYIDLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQD 227 + + + +KL L ++IV+ F +G +QD Sbjct: 175 VKTTVRANISRGSVDDIINKLENEGFNVEKDDILPFCLHVSGQTIVNSRAFKDGYVSIQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLD 284 S+ + + + VLD C+APGGK + ++ A D+ +++ ++ N+ Sbjct: 235 KSSMMVAHIMKLGRDDKVLDACSAPGGKACHMAEILSPEGQIDATDIHSHKIDLIKHNIK 294 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 +L L + DA + +D +LVDAPCS G +R P++ +T+ D I Q Sbjct: 295 KLKLDNIHAFQHDATEPYDGL-YDKILVDAPCSGLGVLRHKPEIKYTQSQDSIQSLVDLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L +KPGG + +S C++++ ++E V+ L+ + E P Sbjct: 354 LQILENIKHNIKPGGTITYSTCTIEQMENENVIYTFLKQN-EEFEFEPFQHPVTGKQV-- 410 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P + DGFF ++R Sbjct: 411 ------KTLQILPQDFDS--------DGFFITQIKRK 433 >gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016] gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri MM2-3] gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A] gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016] gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri MM2-3] gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A] Length = 449 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 121/467 (25%), Positives = 197/467 (42%), Gaps = 47/467 (10%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK+ NAR ++ L V+ +D L+ +D+ L I+ L Sbjct: 1 MKTKFQPQNARELALVALEGVVENGAYSNLQVDQLLKKYP---LADKDRRLATNIIYGVL 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 + ++ L+ + R ++ LL ++ Q YL V D+AV D ++E AKR + Sbjct: 58 QHKLTLEYWLNGFIQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKR-RG 114 Query: 117 NRHFAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 N K V +L R+ E R++ + +P W L YG+E I Sbjct: 115 NPGIRKFVTGVLHAILRKGLPDLRQINERDLRLSIENSVPRWLVNELTGEYGEEDTEKIL 174 Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEG 221 + P + + V D+ T L+A + L I+S F G Sbjct: 175 QSINEPAHQVIRVNTAKTDLPTVKQTLDAAGIEYQEGQVAQNALVITKGEIISSDLFKNG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLE 277 +QD SA + V+ VLD CAAPGGKT Q+ V ALD+ + ++ Sbjct: 235 EITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAETLADEDGHVDALDIHQHKVR 294 Query: 278 KLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + A + + + FD +LVDAPCS G +RR P++ +T+ Sbjct: 295 LIEKNARRLGVEKRVTAHALDAREVDQLFDDESFDKILVDAPCSGIGLLRRKPEIRYTKT 354 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +D + Q +L + VK GGI+ +S C++ +Q++++ VQ L P ELV Sbjct: 355 LNDSKQLHKIQLAILNAVAAKVKKGGIITYSTCTILRQENDDTVQAFLAEHP-EFELVKT 413 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +A K D + + + I P + DGFF +L++ Sbjct: 414 TTAR-KVKDNRHSPT----LTILPSDFDS--------DGFFISSLKK 447 >gi|213968427|ref|ZP_03396570.1| sun protein [Pseudomonas syringae pv. tomato T1] gi|301384285|ref|ZP_07232703.1| sun protein [Pseudomonas syringae pv. tomato Max13] gi|302060153|ref|ZP_07251694.1| sun protein [Pseudomonas syringae pv. tomato K40] gi|213926715|gb|EEB60267.1| sun protein [Pseudomonas syringae pv. tomato T1] Length = 448 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 117/455 (25%), Positives = 193/455 (42%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232 + + +L + SLPGFAEG VQD +A + Sbjct: 175 VNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ +V++ L + EL A + Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P ++ G DGF+ L ++ Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437 >gi|270290371|ref|ZP_06196596.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici 7_4] gi|270281152|gb|EFA26985.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici 7_4] Length = 444 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 110/457 (24%), Positives = 190/457 (41%), Gaps = 41/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + + L+ D LS+ D+ L+ +V L+ ID Sbjct: 7 NPRDLAVDALESID-EGAYSNLELNQVIQD---ADLSEVDKHLLTELVYGVLQHRLTIDF 62 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L L + + LLR ++ Q+ +LD V +A+ + +E AKR + + K+V Sbjct: 63 YLANFLQRP-EQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKR-RGSDGVRKMV 120 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR R+ +L QR+A + W ++L G+++ I D+ P + Sbjct: 121 TGVLRSYQRQGTPSLDSIPDLTQRLATEYSVASWIVDQLLYELGEDKCRKILDSINRPAH 180 Query: 178 IDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDAS 229 + + + ++ + + + L+ + F G QD S Sbjct: 181 LSVRMNPIQRSTAAIRQSLSEEYDVQESLLATDGLRLQNGPGLAQSASFQAGEVIAQDES 240 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRL 286 A + + VLD CAAPGGKT QL +V A D+ + R ++ N R+ Sbjct: 241 AMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNARRM 300 Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 HL DA CP+ FD +LVDAPCS G +RR P+ + + D Q Sbjct: 301 HLTNIVTEVHDATTPCPELKEEFDCILVDAPCSGIGLLRRKPETRYLKSKKDSSDLHRVQ 360 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L S +K GGI+ +S C++ +++++ + + L P L K+ Sbjct: 361 LDILDNVASMLKVGGILTYSTCTMLRKENQMTIDEFLTQHPEFELLKTQTDKKVKADRTD 420 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++L+ I PD G DGFF ++++ Sbjct: 421 LSLN------IYPDDF--------GSDGFFIANMKKV 443 >gi|269468281|gb|EEZ79965.1| ribosomal RNA small subunit methyltransferase B [uncultured SUP05 cluster bacterium] Length = 423 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 118/451 (26%), Positives = 207/451 (45%), Gaps = 43/451 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + N R V+ + V+ + SL+ + +D L +++V T+RF Sbjct: 4 TNKSNTRAVALDAICSVVLDKRSLSSFV-----------YPDQDDALAKSLVFGTIRFYH 52 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +++ ++ +L SL ++ + L+ + QILY VA +A + V+ + Sbjct: 53 QLNDIVTDLLNHSLEKEDLDIHCLMLLGAYQILYSKVAIHASIFETVDTLNFLDKT-WAK 111 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDL 180 LVN+ILR++ R+K LL + P W ++++ Y + + + +P+ I + Sbjct: 112 GLVNAILRQIDRDKDSLLAQTH--YSHPTWLVKKIKQNYPDDFEQIFTQNNTQAPMTIRV 169 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPV 234 K ++ + L + + + + P S+ LP F G +VQDASA + Sbjct: 170 HPKSSVDDYQQSLANENVQSNKLEITPQALILDKPMSVYDLPDFESGSCYVQDASAQLAA 229 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L NN +LD C+APGGK L A + ALD S RLE+++ N R ++ + Sbjct: 230 NLLDPKNNDVILDACSAPGGKATHLCELAPNATIVALDNSSERLERVKQNTQRFNIDNIE 289 Query: 293 II--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 II D+ +LF+ +L+DAPCS+TG IRRHPD+ R DI Q K+L Sbjct: 290 IIKGNAQQQDWWDGELFNKILLDAPCSATGVIRRHPDIKLLRKPKDITNLVKLQAKILAN 349 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 S +KP G+++++ CS+ K ++E+ + L S P E+ ++ + Sbjct: 350 LWSMLKPDGVLLYATCSILKSENEDQITHFLESHPDAEEIK---------TNLDWGIDSF 400 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P S DGF+ +R++ Sbjct: 401 VGKQQLP---------SHEFDGFYYAKIRKI 422 >gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000] gi|46396868|sp|Q88B41|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 448 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 116/455 (25%), Positives = 193/455 (42%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232 + + +L + SLPGFAEG VQD +A + Sbjct: 175 VNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NL+RL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLERLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ +V++ L + EL A + Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P ++ G DGF+ L ++ Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437 >gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271] gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271] Length = 449 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 110/460 (23%), Positives = 191/460 (41%), Gaps = 33/460 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K+ +NAR ++ L R+ + L D L +VN LRF Sbjct: 4 KTSINAREIALLTLVECEREEVKSEQALHRYLNKYKTAR---NDSALATELVNGILRFRQ 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ID+++ L + L +LR+ V Q+ YLD + D+A V V+ A++ K +H Sbjct: 61 SIDSIITAFYHHKLKKASPFLVNILRIGVYQLRYLDRIPDWAAVSQCVDLARKYKG-QHI 119 Query: 121 AKLVNSILRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 A++VN +LR V+ LQ++A + PEW ER YG++R ++ Sbjct: 120 ARIVNGVLRSVAANPQKTVSSLEMQNPLQQLAAATSHPEWMLERWMARYGEDRTRRVTSY 179 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAE-GVWWV 225 +P L + + E + L + F G+ V Sbjct: 180 NNTPPLFGLRINTLKTNKEAMLKAFADASVEFIETGLPSFLLTKDFHRTEPFITLGLLTV 239 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ ++P L +VLD+CAAPGGK+ L + + KV A+D + +R Sbjct: 240 QNPVQALPCLLLDPEEGETVLDMCAAPGGKSTFLAELMHNSGKVIAVDRYPNKCRTIRER 299 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 ++ + I+ DA + +L+DAPCS TG + R P++ W + + I + Sbjct: 300 ASQMAISVITTIDSDARNVPAGISPAKILLDAPCSGTGVLARRPELRWKMNREKITQLVA 359 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q LL + + GG++V+S CS++++++ + + L+ P + + Sbjct: 360 LQESLLNHAATLLPAGGVLVYSTCSIEEEENMLQIDRFLQKHPEFIAESHPRGLPGPCHE 419 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P + G G DG FA LR+ Sbjct: 420 LSG----------HPGAYLTLPGDHEGFDGGFAQRLRKQA 449 >gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus fermentum 28-3-CHN] gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus fermentum 28-3-CHN] Length = 448 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 116/456 (25%), Positives = 194/456 (42%), Gaps = 40/456 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L V L+ LS D+ LV A+V TL+ +D Sbjct: 11 ARAIALATLDKVRTSGAYSNLQLNQALESGQ---LSGADRRLVTALVYGTLQHQRTLDYW 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN---RHFAK 122 L + + + ++ LL +++ Q YLD V ++A D A+E AKR R Sbjct: 68 LSPFIAG--KKVRPWVKTLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVRRFVTG 125 Query: 123 LVNSILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++++ILR + + QR+A + +P+W + L YG + A++ P I Sbjct: 126 VLHAILRNGVADVEKIEDPKQRLAIQASLPDWLVDELVAQYGLAQTEALAKVINEPARIS 185 Query: 180 LTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 L V T + L +++ F GV +QD SA Sbjct: 186 LRVNRAKATVEEAQALLRSAGVETKPSEVAQNGLVVTKGAVLKTAAFKNGVVTIQDESAM 245 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + V+ + VLD CAAPGGKT Q+ + +V ALD+ + ++ + N R+ + Sbjct: 246 LAVESMHLTGHERVLDACAAPGGKTVQIAEALTDGEVYALDIHRHKVGLIEKNAQRMGVD 305 Query: 290 A-EDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++DA + + FD +LVDAPCS G +RR P++ + + D + Q Sbjct: 306 DRVFARQLDARQVGQEFADQFFDQILVDAPCSGMGLLRRKPEIRYDKQLGDSQRLHQIQG 365 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L + VK GGI+ +S C++ +Q+++E V + L+ P + K A Sbjct: 366 AILDSVATKVKKGGIITYSTCTILRQENDETVAEFLKHHPNFRLQKTTTARMLKDNRQAQ 425 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ + P G DGFF L+R+ Sbjct: 426 TLT------LLPSDY--------GSDGFFISNLQRV 447 >gi|290581015|ref|YP_003485407.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025] gi|254997914|dbj|BAH88515.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025] Length = 440 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 117/451 (25%), Positives = 200/451 (44%), Gaps = 38/451 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L+ + K L LSQ D+ L+ +V TL ++ Sbjct: 11 ARSGALFVLTEIFDKTAYSNIALRHYLSKHK---LSQADRSLLTELVYGTLTRKITLEWY 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + + LL +S+ QILYLD + +A+V+ AV+ AK NR KLVN Sbjct: 68 LAHYIE-DRNKLETWIYYLLMLSLYQILYLDKIPQHAIVNEAVDLAKS--RNRGAEKLVN 124 Query: 126 SILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ R+K +R + +P W +++ + +G++R ++I + S Sbjct: 125 AVLRQFLRQKRPDITVIKRKNKRYSITYSVPVWLVKKMISQFGEDRAISILKSLLVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I + IE A A L + F +G +QD S+ + Sbjct: 185 SIRVVNPDQIEVIAKATGAKKSVLSPCGLVKASGQFFDSDLFKQGKITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 N +VLD C+APGGK + ++ ++ ALD+ +L+ ++ N DRL Sbjct: 245 LAIKGNETVLDACSAPGGKAVHIASYLTTGQIIALDLYDHKLKLIKDNADRLKAANYIKP 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D Y K FD +LVDAPCS G IRR PD+ + +D+ D Q ++L Sbjct: 305 QKLDARKVHKYFAKDTFDKILVDAPCSGIGLIRRKPDIKYNKDSKDFTSLQKIQLEILDS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +K GGI+ +S C++ ++++ V+++ L P N K + + Sbjct: 365 VCQTIKKGGIITYSTCTIFAEENQMVLKQFLEQHP--------NFEQVKLNHKKKDIVVD 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + ITP+ DGFF ++R+ Sbjct: 417 GCLLITPEQYL--------TDGFFISQVKRI 439 >gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC2047] Length = 436 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 123/462 (26%), Positives = 216/462 (46%), Gaps = 44/462 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R ++ +L+ V++ + SL LL +LS +DQ L++ + R+ Sbjct: 1 MSKRFNLRAHATRILTSVVKNQQSLASLLP-----YQPEILSSQDQALLQELCFGVCRWY 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R++A +D +L L K ++ LL + + Q+ + + +A + V QA + + Sbjct: 56 QRLNAQIDMLLDKPLKAKDTDVKVLLLLGLYQLEFTRIPAHAAISETV-QACKQLKKASA 114 Query: 121 AKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + L+N+ILRR REK + ++ + P W +RL+ + E I A Sbjct: 115 SGLINAILRRSQREKEAMLDSLNKKTDYLYSHPYWLIKRLKQAWP-EHWQQICAANNERA 173 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227 + L V + + KLN + + P ++ +LPGF +G VQD Sbjct: 174 PMSLRVNALRNNRADYLEKLNNANIKAQASPFSQHGINLEKPTNVETLPGFTDGQCSVQD 233 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLD 284 +A + L N VLD CAAPGGKT L+ + VTAL++ R +++ NL+ Sbjct: 234 EAAQLAATLLQLEPNQRVLDACAAPGGKTCHLLELQPQLASVTALELDADRAQRIHQNLE 293 Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L A + + ++ +D +L+DAPCS+TG IRRHPD+ R DDI + A Sbjct: 294 RLQLSATVVEGDASQPNKWWDQQPYDRILLDAPCSATGVIRRHPDIKLLRRDDDITELAK 353 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L +KP GI++++ CS+ +++E+V+ L+ +++P + + Sbjct: 354 LQLQILQALWPLLKPHGILLYATCSVLPEENEQVISTFLKQ-QCQAKILPFEADWGIPGA 412 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + ++ P G DGF+ +++ QP Sbjct: 413 VGR--------QLFPQ--------PQGHDGFYYARIQK--QP 436 >gi|302130426|ref|ZP_07256416.1| sun protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 448 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 117/455 (25%), Positives = 193/455 (42%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEL-----RDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232 + + +L + SLPGFAEG VQD +A + Sbjct: 175 VNRRHQRRDQYLELLKTAGLEASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADARETAQWWEGKPFQRILLDAPCSATGVIRRHPDIKLTRQLDDIAALATLQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ +V++ L + EL A + Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQ-- 412 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P ++ G DGF+ L ++ Sbjct: 413 ---------PH-GRQLLAQQGGHDGFYYAKLIKIA 437 >gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici DSM 20284] gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus acidilactici DSM 20284] Length = 444 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 110/457 (24%), Positives = 189/457 (41%), Gaps = 41/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + + L+ D LS+ D+ L+ +V L+ ID Sbjct: 7 NPRDLAVDALESID-EGAYSNLELNQVIQD---ADLSEVDKHLLTELVYGVLQHRLTIDF 62 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L L + + LLR ++ Q+ +LD V +A+ + +E AKR + + K+V Sbjct: 63 YLANFLQRP-EQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETIEIAKR-RGSDGVRKMV 120 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR R+ +L QR+A + W ++L G+ + I D+ P + Sbjct: 121 TGVLRSYQRQGTPSLDSIPDLTQRLATEYSVASWIVDQLLYELGENKCRKILDSINRPAH 180 Query: 178 IDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDAS 229 + + + ++ + + + L+ + F G QD S Sbjct: 181 LSVRINPIQRSTAAIRQSLSEEYDVQESLLATDGLRLQNGPGLAQSASFQAGEVIAQDES 240 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRL 286 A + + VLD CAAPGGKT QL +V A D+ + R ++ N R+ Sbjct: 241 AMLVGETMQLATGQKVLDACAAPGGKTTQLAQKVGPDGQVIAWDIYESRTRLIQQNARRM 300 Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 HL DA CP+ FD +LVDAPCS G +RR P+ + + D Q Sbjct: 301 HLTNIVTEVHDATTPCPELKEEFDRILVDAPCSGIGLLRRKPETRYLKSKKDSSDLHRVQ 360 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L S +K GGI+ +S C++ +++++ + + L P L K+ Sbjct: 361 LDILDNVASMLKVGGILTYSTCTMLRKENQMTIDEFLTQHPEFELLKTQTDKKVKADRTD 420 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++L+ I PD G DGFF ++++ Sbjct: 421 LSLN------IYPDDF--------GSDGFFIANMKKV 443 >gi|298484625|ref|ZP_07002729.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 441 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 122/455 (26%), Positives = 199/455 (43%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A++ K+ L+ Sbjct: 56 AMAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCAEKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEHWEAICAANNAHPPMILR 174 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + LN L + P + SLPGFAEG VQD +A + Sbjct: 175 VNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDIV A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ EV++ L + EL A + A Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSGARELDIAGQAGQPPAGIKQA- 413 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 -----------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|289627007|ref|ZP_06459961.1| sun protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647928|ref|ZP_06479271.1| sun protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867899|gb|EGH02608.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 441 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 121/455 (26%), Positives = 201/455 (44%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFD-IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + + + LN L + P + SLPGFAEG VQD +A + Sbjct: 175 VNRRHNSRDQYLELLNNAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L +LD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRILDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDIV A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG++V++ CS ++ EV++ L + EL A + A Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTEVIEAFLARTSGARELDIAGQAGQPPAGIKQAR 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 415 G------------RQLLAQQGGHDGFYYAKLIKIA 437 >gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis ATCC 49540] gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis ATCC 49540] Length = 449 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 192/460 (41%), Gaps = 45/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR ++ L V + + +D L DQ LV IV TL+ ++ Sbjct: 8 NARELAFASLERVRKTKAYSNLQVDETLRRH---ELKPADQRLVTTIVYGTLQHQLTLEY 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + ++ LL + Q YLD V ++AV D ++ AKR + N K V Sbjct: 65 WLKSLT--PGKQLDPWVETLLLTAFYQYNYLDRVPNWAVTDETIKIAKR-RGNPGIRKFV 121 Query: 125 NSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +L + +R++ + +P+W E+ G + I A P + Sbjct: 122 TGVLHSALRKGVPDFSTIKPIAKRLSIEASVPQWLVEKFIEENGVQTTKKILQAINEPAH 181 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDAS 229 + + V +ET +L + T + L +IV+ P +GV +QD S Sbjct: 182 VSIRVNTKKSSLETVKQQLLDEGIETAESQVAVNALVVTSGNIVNSPLLKDGVITIQDES 241 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----IVSGAKVTALDVSKRRLEKLRCNLD 284 A + V+ VLD CAAPGGKT Q+ G KV ALD+ + ++ + N Sbjct: 242 AMLAVESMDLHPQFKVLDACAAPGGKTVQIAEQLSSDQGGKVVALDIHQHKVRLIEKNAQ 301 Query: 285 RLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ + + D + FD +LVDAPCS G +RR P++ +T+ D + Sbjct: 302 RMGVEGVVKPIALDARKVNDKFADEEFDRILVDAPCSGMGLLRRKPEIRYTKTAHDSQQL 361 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L +K GGI++FS C++ +++E VQ+ L++ P + K Sbjct: 362 HQIQLAILNAVAPKLKKGGIIIFSTCTILTEENEHTVQEFLQAHPDFTLERTVTKRALKD 421 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ I P G DGFF L+R Sbjct: 422 DRDSATLT------ILPSDY--------GSDGFFISCLKR 447 >gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202] gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202] Length = 432 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 127/456 (27%), Positives = 209/456 (45%), Gaps = 41/456 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR V++H++ V+ + SL L+ A + +D LV+ I R L Sbjct: 1 MKKKQNARAVAAHIILQVLDQGKSLATLIPE-----AQSQVESKDLPLVQEIAFGVCRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++ ++ ++ L K + LL V + Q+LY+ V +A VD V K K + F Sbjct: 56 PRLENIIKQLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVNATKSLKLD-SF 114 Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L N +LRR RE+ + ++ PEW +L+ Y R + ++ P++I Sbjct: 115 RALTNGVLRRFLREQETILAKVDKHWQTLHPEWLVNKLKKAYPNWREIVEANNQKPPMWI 174 Query: 179 DLTVKFDIET---------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + N S+ LP F +G VQDA Sbjct: 175 RVNTQHTNRADYVGLLGDLAKNTENVTACLPDCAIALGKAVSVNQLPHFEQGWATVQDAH 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A +L N +LD CAAPGGKT ++ + V ALD+ + RL +++ NL RL+ Sbjct: 235 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLARVKENLARLN 294 Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 A I +FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q Sbjct: 295 QQATVICGDASQPEQWLDNGVMFDRILLDAPCSATGVIRRHPDIKWLRKEEDIAELAALQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K+L + +KP GI++++ CS+ +++ + +Q+ + ++P +L+ ++ K ++ Sbjct: 355 SKILNALWARLKPNGILLYATCSVLPEENSQQIQQFIANTPN-AKLLEMDFHGEKVLEK- 412 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P G DGFF L + Sbjct: 413 ---------QFFPQNY--------GGDGFFYAKLMK 431 >gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella aurantiaca DW4/3-1] gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella aurantiaca DW4/3-1] Length = 425 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 115/443 (25%), Positives = 181/443 (40%), Gaps = 38/443 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + L +LD ++ R RD L + T R +D + L Sbjct: 1 MRATDAYLNVVLDTALSEAPPR--DARDTALATELAYGTTRRQLALDYAITRFADRKLDA 58 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR------- 130 + + LR+ Q+ Y V A V V QA +D A VN+ILR+ Sbjct: 59 MEDRVLAALRIGAYQLFYTRVPARAAVAETV-QALKDLGVGRAAGFVNAILRKLAALPGA 117 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 + ++ + ++ P+W ER +G+ER A+ A + + E Sbjct: 118 PLPPEDDVAEHLSVRESHPKWLVERWLRQFGRERAEAMLVADNQTPPVVVRTNTAKVTRE 177 Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + V L + + + G++EG+W VQD +A + Sbjct: 178 ALLAQFREVGLEVQPTPVSPVGIVLPSLGRLEDVYGYSEGLWQVQDEAAQLVGVYAAIPE 237 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 N LD+CAAPGGK +V A+D+ +L K+ RL L + Sbjct: 238 NARTLDVCAAPGGKACHQAE-THEVVAMDLHANKLPKIVSEAKRLGLLSRLRAVAHDATK 296 Query: 302 CPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + F AVLVDAPCS GT+RRHP++ + R D+ + A QR++L V PG Sbjct: 297 PYDEALGEFQAVLVDAPCSGLGTLRRHPELRYRRGEADLGRLATLQRRILENCQEVVPPG 356 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G+++++ C+L+ Q+ ++ V LRS P P+ S ++ A W+R P Sbjct: 357 GLLIYAVCTLEPQEGQDQVDMFLRSHPEWTAEPPVLSGVKLPMNQA-------WLRTLPG 409 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 G DGFFA LR+L Sbjct: 410 --------PEGWDGFFAARLRKL 424 >gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae L20] gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 432 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 43/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR V++ ++ V+ + SL L+ A L +D LV+ I R L Sbjct: 1 MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++AV+ + L K + LL V + Q+LY+ V ++A VD V A+ K + +F Sbjct: 55 PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113 Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L+N +LRR REK ++ PEWF +L+ Y R + ++ P++I Sbjct: 114 KALINGVLRRFLREKDSLLAKFDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173 Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 ++ + N L P + L F +G VQDA Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENTTACVPESAILLANPVPVNKLMNFEQGWATVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286 A L N +LD CAAPGGKT ++ + + V ALD+ + RL+++R NL RL Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARL 293 Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 A I A +FD +L+DAPCS+TG IRRHPD+ W R +DI + Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q K+L +KP G++V++ CS+ +++ E + + + S + A W +D Sbjct: 354 QAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P G DGFF L + Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431 >gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp. ART55/1] Length = 445 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 185/460 (40%), Gaps = 43/460 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 R V L + + L + F +S++D+ + +V ++D Sbjct: 3 TKTREVVLTTLLDIEKNHTFSNIALGTALRANQF--MSKQDRAYITRMVEGVTEQRIKLD 60 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +++ + + + K ++ +LR+ ++ ++D V D A +L+V+ A Sbjct: 61 YIINQFSKTKVNKCKPLIRCVLRMGTYELFFMDSVPDSAACNLSVKLAVDHGFG-SLRGF 119 Query: 124 VNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR ++R + + + +P E L Y E V I + Sbjct: 120 VNGVLRNIARNRDGIKYPDKNTSPLEYYSVEYSVPVELVEILLQDYDSETVDRILGSNYE 179 Query: 175 PLYIDLTVKFDI---ETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWV 225 + V D + KL A + L + + + +PGF +G + V Sbjct: 180 MRPTSIRVNTDRISVDEVERKLEAAGIETVRGSLNDTSLLIKGYDYVRRIPGFMDGEFVV 239 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCN 282 QD S+ + V+ G N V+D+CAAPGGKT +V + D+++ + E + N Sbjct: 240 QDQSSCLAVRAAGIQNGDLVVDVCAAPGGKTMYAASLAGQTGRVISRDLTENKTELIEEN 299 Query: 283 LDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +DRL L + DA D D V+ D PCS G + R D+ + D I + Sbjct: 300 VDRLGLTNVTVEAWDARDLDENLVGKADVVIADLPCSGLGIMGRKNDIKYNVTGDSIDEL 359 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q+ +L +VK GG +V+S C++D ++++ V+ + + E V ++ + Sbjct: 360 AQLQKDILDTVSRYVKTGGTLVYSTCTIDSRENQNNVKWFVENH--DFETVSIDEIVPRH 417 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G++ + DGFF R Sbjct: 418 GG------DKGYVTLL--------QGVDECDGFFISKFVR 443 >gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor] gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor] Length = 574 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 116/479 (24%), Positives = 193/479 (40%), Gaps = 62/479 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53 R V+ L + + + + LL+ + DS + L RD LV IV Sbjct: 109 RAVAVVRLLRIEKGKAFVD-LLNEKANDSGEKEIGYVERTLGFSTRYLDDRDIRLVTVIV 167 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 T+R+ +D ++ + + L Q+LR+ +IL LDV YA VD V+ A Sbjct: 168 AGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLDVPAYAAVDENVKLA 227 Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157 K +VN+ILR+ + + + ++ I P W R Sbjct: 228 KVALRP-GAGNMVNAILRKLVLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 286 Query: 158 NFYGKERVLAISDACISPLYIDLTVKFD----------IETWAHKLNAVMLPTGGIRLKE 207 F+GK+ L + + S + L V + G +R++E Sbjct: 287 RFHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRADLVKRLESLQVHYEESVMDGFVRIQE 346 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264 ++++ +G+ VQD SA + V + +++D CAAPGGKT + Sbjct: 347 GMQAVLQAGLLKDGICAVQDESAGLVVSVVDPQPGETIVDCCAAPGGKTLFMASRLSGEG 406 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKK--LFDAVLVDAPCSSTGT 321 K+ ALD++K RL L L D Y + +D VL+DAPCS G Sbjct: 407 KIQALDINKGRLRILMDAAKLHGLDDIITDIHADLRLYAKETTAKYDKVLLDAPCSGLGV 466 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + D+ W R +D+ + C Q +LL V+PGGI+++S CS+D +++E+ + + Sbjct: 467 LSKRADLRWNRQFEDLEELICLQDELLDSASMLVRPGGILIYSTCSIDPEENEKRIAAFV 526 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P ++ EG+ + MDG FA L R Sbjct: 527 QRHPEFA------PQSVCGYVPTEFITDEGFY--------SSNPTKHSMDGAFAARLVR 571 >gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021] gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021] Length = 450 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGVSLKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+PL + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAH-ADAELLPLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|254362113|ref|ZP_04978233.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica PHL213] gi|261491771|ref|ZP_05988351.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495480|ref|ZP_05991927.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093674|gb|EDN74629.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica PHL213] gi|261308814|gb|EEY10070.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312610|gb|EEY13733.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 448 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 218/469 (46%), Gaps = 52/469 (11%) Query: 1 MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK +++R +S+ ++ V+ + SL+ L+ A + L +D LV+ I Sbjct: 6 MKKQSFKALSSRAISATIILQVLDQGKSLSTLIP-----DAQKQLEPKDLPLVQEITFGV 60 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 R LPR+++++ ++ L K + LL V + Q+LY+ V +A VD V A + + Sbjct: 61 CRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKTLK 119 Query: 117 NRHFAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 F L N +LRR RE+ E+ ++ PEW +L+ Y R + ++ Sbjct: 120 LDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAYPNWREIVEANNQRP 179 Query: 175 PLYIDLTVKF--------------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 P++I + + + E + N L E ++ LP F + Sbjct: 180 PMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCALLLERAVNVNQLPHFEQ 239 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278 G VQDA A +L G N +VLD CAAPGGKT AKV ALD+ + RL + Sbjct: 240 GWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEKAPKAKVMALDIEESRLSR 299 Query: 279 LRCNLDRLHLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 +R NL RL +I D LFD +L+DAPCS+TG IRRHPD+ W R Sbjct: 300 VRENLVRLG-QIAQVICGDASKPEEWLEEGVLFDRILLDAPCSATGVIRRHPDIKWLRKE 358 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 DI + A Q ++L +KP GI++++ CS+ Q++ E +Q+ L+ +P +L Sbjct: 359 GDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQENSEQIQRFLQDTPNAKQLE--- 415 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + E + ++ +G DGFF L+++ + Sbjct: 416 ----------IDFNGEKVL------EKQFFPQPNGGDGFFYAKLQKVAE 448 >gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus influenzae 22.1-21] gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus influenzae 22.1-21] Length = 450 Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 127/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF ++L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGVSLKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL RL+ A Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311 Query: 293 II-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + E A FD +L+DAPCS+TG IRRHPD+ W R DI + QR Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQR 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+PL + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENGEQIQAFLNAH-ADAELLPLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri JV-V03] gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri JV-V03] Length = 438 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 191/457 (41%), Gaps = 45/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L LL +S Q +L+ V A+ D A + AK+ K+N KL Sbjct: 60 QLKPLIKTKLR--DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKKFSKKNSGSYKL 117 Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR +V L+ ++ P+W E L + +G+++ I P Sbjct: 118 VNGILRALERQGKVLPSSDNLVDYLSIKESFPKWLVEYLLDHFGEDQTKEILVRSNQPAA 177 Query: 178 IDLT---VKFDIETWAHKLNAVMLPTGGIRLKELP-----ESIVSLPGFAEGVWWVQDAS 229 + VK E L L + F +G +QDA+ Sbjct: 178 NSIRMAAVKGKFEEIKTALRKDGFDFKESCLTRHNLNLSKGGVAQTSLFKDGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F N VLD C+APGGKT Q+ V ALD+ + +L ++ RLH Sbjct: 238 ASLAVDAFNFTGNEQVLDACSAPGGKTVQIAEKLTNGSVIALDIHENKLRLVKNAAKRLH 297 Query: 288 LYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +DA FD +LVDAPCS G IRR P++ + + DDI A Sbjct: 298 VSDKVKTKALDARKAQEYFTAGQFDKILVDAPCSGLGLIRRKPEIRYEKSLDDIKNLARI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + P G +V+S C++ ++ E VV + L+ P +LVP+ Sbjct: 358 QLSILENISGLLAPSGELVYSTCTISLEEDEGVVNQFLKLHP-EFDLVPVQVGKLP---- 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P + G DGFF L++ Sbjct: 413 -----KQNMVRIFPSV--------DGSDGFFIAKLKK 436 >gi|330993136|ref|ZP_08317074.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter sp. SXCC-1] gi|329759906|gb|EGG76412.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter sp. SXCC-1] Length = 395 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 142/414 (34%), Positives = 204/414 (49%), Gaps = 23/414 (5%) Query: 29 LDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLR 87 LD SA RD+ + LR + + VL L P ++ +L Sbjct: 2 LDTSLEHSAAARTAEPRDRAAAHRLAATVLRHMGTANEVLAPFLKREPPE---PVRVVLL 58 Query: 88 VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS- 146 + VAQ+L+LD +A V +V A+R + FA LVN++LRRV+ + L+ + Sbjct: 59 IGVAQLLFLDTPPHAAVATSVALARR-RGLVPFAGLVNAVLRRVAAGGAQALEGLDQPRL 117 Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P W + I+ A +DLT+ ++P G +R Sbjct: 118 DVPPWLWQSWGRL-----ARPIATALGHEPPLDLTI---RPGGEPPPGGELMPGGSVRFA 169 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266 + LPGFAEG WWVQD +AS+P +L V DLCAAPGGKTAQL +GA+V Sbjct: 170 AGTAKVADLPGFAEGAWWVQDMAASLPARLLDVKPGERVADLCAAPGGKTAQLACAGAEV 229 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 A++ RR+E+LR NL RL L +I DA + P+ DA+L+DAPCS+TGTIRRHP Sbjct: 230 FAIEREGRRIERLRANLARLGLGGVHVIHADAATWRPEMPLDAILLDAPCSATGTIRRHP 289 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 D +W + DI Q +LL ++PGG +V++ CSL ++ E+ + Sbjct: 290 DAMWIKRPRDIATMTEGQDRLLAAARDMLRPGGRLVYAVCSLQPEEGEQRARAA-----E 344 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ + + A +PEGW+R P ML G GMDGFFA R Sbjct: 345 ALGLIADPFTPDELAFLPQARTPEGWLRTHPGML----GARGGMDGFFAARFHR 394 >gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 432 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 43/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR V++ ++ V+ + SL L+ A L +D LV+ I R L Sbjct: 1 MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++AV+ + L K + LL V + Q+LY+ V ++A VD V A+ K + +F Sbjct: 55 PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113 Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L+N +LRR REK ++ PEWF +L+ Y R + ++ P++I Sbjct: 114 KALINGVLRRFLREKDSLLAKFDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173 Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 ++ + N L P + L F +G VQDA Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENTTACAPESAILLANPVPVNKLMNFEQGWATVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286 A L N +LD CAAPGGKT ++ + + V ALD+ + RL+++R NL RL Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARL 293 Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 A I A +FD +L+DAPCS+TG IRRHPD+ W R +DI + Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q K+L +KP G++V++ CS+ +++ E + + + S + A W +D Sbjct: 354 QAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P G DGFF L + Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431 >gi|330952317|gb|EGH52577.1| 16S rRNA methyltransferase B [Pseudomonas syringae Cit 7] Length = 441 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 125/456 (27%), Positives = 198/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETGGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + LN L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + K F +L+DAPCS+TG IRRHPD+ TR DDIV A Q Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAALQGG 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|197106963|ref|YP_002132340.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1] gi|196480383|gb|ACG79911.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1] Length = 598 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 153/413 (37%), Positives = 210/413 (50%), Gaps = 17/413 (4%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88 L+ A L+ RD+ RA+ LR L IDA L L P +Q +LR+ Sbjct: 201 LEEGLTHPALGRLAPRDRAFARALAMAALRHLGPIDAALQARLRKPPP--DRIVQ-VLRL 257 Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148 AQ+L L +A V V+ A K + F LVN++LR +SRE +L Sbjct: 258 GAAQLLVLKTPAHAAVSATVDLAASQKGGQAFKGLVNAVLRGLSREPPDLSDPDLLA--- 314 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-TWAHKLNAVMLPTGGIRLKE 207 P+W R +G E A++ D+T K + ++ + GG Sbjct: 315 PQWLAARWRAAFGPEAARAMAAMVADEPATDVTPKDSADAEALGQMLEGRVLPGGSVRAG 374 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267 L + + PGFAEG WWVQDASA+IP +L + + LDLCAAPGGKT QL +GA+VT Sbjct: 375 LKGEVQAWPGFAEGRWWVQDASAAIPARLLAVKADETALDLCAAPGGKTLQLAAAGARVT 434 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 A+D + RL+++ NL R L AE + + DA ++ ++ FDAVL+DAPCS+TGT RRHPD Sbjct: 435 AVDKAAGRLKRVSENLARTGLSAEVV-QADAAEWPDRRRFDAVLLDAPCSATGTYRRHPD 493 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 VLW DI K A Q +LL VK GG +V+ CSL+ ++ E V+ L+ SP Sbjct: 494 VLWVASPADIPKLATLQARLLDAAARRVKAGGRLVYCVCSLEPEEGEAQVEAFLKRSP-- 551 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E P + + P G +RI P L+ G DGFF LRR Sbjct: 552 -EFAPEPVEPGEGGAPEASRLPNGTLRILPHHLD------GGTDGFFIARLRR 597 >gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143] gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143] Length = 434 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 196/458 (42%), Gaps = 42/458 (9%) Query: 1 MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + + ++R ++ L+ ++ SL+ L L + ++++D+ L R + LRF Sbjct: 1 MSNTLLDSRAAAARCLAKIV-NGSSLSQQLPLL-----EQQVAEKDRSLYRQLCYGVLRF 54 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 P+++ + ++ L K + + L+ + + Q+ + + D+A V V K K++ Sbjct: 55 YPKLNGIAKLLIQKPLKGKDHDVLMLVLIGIYQLSEMRIPDHAAVSTTVNATKSLKKH-W 113 Query: 120 FAKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR+ R + + +A P+W + L + +I Sbjct: 114 AKGFVNGVLRQWQRNEQDLLTKLTVAEAQSHPQWLHDELVKAWP-AEASSIESVNNQHPP 172 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V + +L A + G + S+ LP F+ G VQD Sbjct: 173 MCLRVNHQHSSTADYLQQLAAHGIDAGRCDFADQGIRLTNAVSVEQLPNFSAGWVSVQDE 232 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 + + L VLD C APGGKT + ++ ALDV +RL+K+ NL+R Sbjct: 233 APQLSAALMALAPGQRVLDACCAPGGKTCHMLELQPQLKQLIALDVDHQRLQKVEQNLER 292 Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L A + + + FD +L+DAPCS+TG IRR+PD+ R DI + A Sbjct: 293 LQLKASLTHGDASEPLTWWDNQPFDRILLDAPCSATGVIRRNPDIKLHRQHSDIAQLAKL 352 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QRK+L +KP G +V++ CS+ ++E +V +V ID Sbjct: 353 QRKILNALWLTLKPNGRLVYATCSVLPDENEIIVGDFCEQQKDAKHIV---------IDA 403 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ ++ P + G DGF+ + + Sbjct: 404 PWGIARPYGRQLLPQ--------NEGHDGFYYAVIEKK 433 >gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 432 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 205/457 (44%), Gaps = 43/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR V++ ++ V+ + SL L+ A L +D LV+ I R L Sbjct: 1 MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++AV+ + L K + LL V + Q+LY+ V ++A VD V A+ K + +F Sbjct: 55 PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113 Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L+N +LRR REK ++ PEWF +L+ Y R + ++ P++I Sbjct: 114 KALINGVLRRFLREKDSLLAKLDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173 Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 ++ + N L P + L F +G VQDA Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENMTACVPESAILLANPVPVNKLMNFEQGWATVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286 A L N +LD CAAPGGKT ++ + V ALD+ + RL+++R NL RL Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEVAPQAKVIALDIEESRLKRVRENLARL 293 Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 A I A +FD +L+DAPCS+TG IRRHPD+ W R +DI + Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q K+L +KP G++V++ CS+ +++ E + + + S + A W +D Sbjct: 354 QAKILEALWGRLKPNGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P G DGFF L + Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431 >gi|255318029|ref|ZP_05359274.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SK82] gi|262380625|ref|ZP_06073779.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SH164] gi|255304852|gb|EET84024.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SK82] gi|262298071|gb|EEY85986.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter radioresistens SH164] Length = 435 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 111/453 (24%), Positives = 199/453 (43%), Gaps = 40/453 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +N R H L V ++ SL+ +L+ + ++ RD+ L ++ TLR Sbjct: 9 PDLNLRAQVVHSLLAV-QQGQSLSLILNQQL-----NQVADRDRALFHELLLGTLRQWFA 62 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + ++ +L L ++ L + + Q+L +A +A + V A + + Sbjct: 63 LKSLALPLLTKPLN--NPVVETCLYLGLYQVLCTRIAPHAAISETVT-ATKQLGFHPLSG 119 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +VN+ILRR +RE + + +P W +RL + E++ ++S + L V Sbjct: 120 VVNAILRRATRETEQFQHTLNQAHGLPSWLFKRLNKDWP-EQIQSLSQNLKQSAPLTLRV 178 Query: 183 KF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 E + +L+ + + + + I LPG+ EG + VQD A + Sbjct: 179 NQRKISREAYLEQLHNIQIQAHACVVSEVGIVLDQSMPIRELPGYDEGWFSVQDEHAQLS 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290 L LN +V+D CAAPGGKTA A + ALD +RL+++ NL RL L A Sbjct: 239 TSLLPNLNTKTVIDACAAPGGKTAHLLEKYQPALLVALDQDPQRLKRITENLQRLDLEAG 298 Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I DA + P++ D +++DAPCS+ G +RRHPD+ R DI ++ Q+++L Sbjct: 299 HVQIEAGDATRWQPEQPVDCIILDAPCSAIGVLRRHPDIRLLRQPSDIAQTVDLQKRILH 358 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + GG +++ CS+ K ++E+ + + VE I + Sbjct: 359 HMWQQLNVGGTLLYITCSILKVENEQQMTQFFIEHKDAVEDK---------IQADWGIEQ 409 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ ++++ Sbjct: 410 LYGRQLLP--------EPGHGDGFYYCRIKKVA 434 >gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM 17244] gi|169259672|gb|EDS73638.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM 17244] Length = 450 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 100/466 (21%), Positives = 204/466 (43%), Gaps = 41/466 (8%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + +R+ + +LS V+ L + D+ L IV+ + Sbjct: 1 MAKNIKISPSRVSAYKVLSEVLMTGAYSNIALTKHLASIKI----EADRRLCTNIVHGVI 56 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 + + +++ VL + + + ++ L + + QI+YL+ + +YA+V+ +V K Sbjct: 57 KKINKLEYVLSTLSNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIVNDSVNLVKMFVG 116 Query: 117 NRHFAKLVNSILRRVSREKI--------ELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + + VN ILR R+K + + E+L Y KE ++ Sbjct: 117 -KKASGFVNGILRNALRKKHELKEIEFSDFFDIMYYEYGFKRALSEKLLLSYSKEELIEY 175 Query: 169 SDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAE 220 + I P + L V + E ++ + E E ++ L + + Sbjct: 176 AKYSILPPNVTLRVNKLKTNREELKNRFKEKGFEVRDTFVPEGIEVLSHLNVTLLEEYKK 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G++ +QD + + ++ VLD+CAAPGGK+ + + + + D+ ++LE Sbjct: 236 GLFSIQDCAGMVVAHSLDVKEDMKVLDMCAAPGGKSMHTSELMNNSGDIVSCDIYTKKLE 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + + +L + ++D + + FD ++ D PCS G IRR P++L + Sbjct: 296 IMNFRMKQLGINNIMTKKLDGTIFNECYMNTFDRIICDVPCSGLGVIRRKPEILIYYSNE 355 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + QR++L GI ++K GG++++S C+++K+++E++V +L+ ++L +N Sbjct: 356 KIEELKKVQRQILENGIRYLKKGGVLIYSTCTINKEENEDIVYSILKEH-EDIKLNEINL 414 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D A A EG + I G + +D FF L ++ Sbjct: 415 PFEFDYDKAKA--KEGIL--------NISGDKNNIDSFFIAKLTKI 450 >gi|190576005|ref|YP_001973850.1| putative sun protein [Stenotrophomonas maltophilia K279a] gi|190013927|emb|CAQ47567.1| putative sun protein [Stenotrophomonas maltophilia K279a] Length = 443 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 123/456 (26%), Positives = 192/456 (42%), Gaps = 40/456 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G R++++ +L+ V + SL L A RD+ L+ A+ LR Sbjct: 13 APGAATRMLAARVLAQVFTRGRSLKAELAWALPKLA----DSRDRALLEALCFAVLRRRS 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DA L + L + L+ LL V AQ+ L++ +A + V+ A+ R A Sbjct: 69 TYDAALQAWMQKPLSARDADLRTLLMVGFAQLDVLELPAHAALSATVDAARALGRERQ-A 127 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN+ILRR RE + PEW + +E + + AI A + P + L Sbjct: 128 GLVNAILRRAQREGVPEQPA---RDAFPEWLADAIERDWP-AQAEAIFSASLQPAPLWLR 183 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + L + L P ++ LPGF +G VQD SA Sbjct: 184 ANRQHGGRDKALTTLAEAGIAAEATALCADALRLATPVAVNQLPGFGDGALSVQDLSAQC 243 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL-- 288 VLD CAAPGGK+A L+ ++ ALD+ RRL + R R + Sbjct: 244 AADALAPATGARVLDACAAPGGKSAHLLERDPSLRLLALDIDARRLARARDTYTRTGVGE 303 Query: 289 --YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 D + FDA+L+DAPCS+TG IRR PDV++ R +D+ Q + Sbjct: 304 HAQTLVADASDPGSWWDGVPFDAILLDAPCSATGVIRRQPDVMFHRRAEDVDALVGVQAR 363 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL S ++PGG+++++ CS+ + ++ + V+ L+ P V + + A Sbjct: 364 LLEACWSMLRPGGVLLYATCSILRAENIDQVRAFLKWHPDAV---------AQPLGDAFG 414 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG R + + DGFF L + Sbjct: 415 VDCEGVAR-------QRLPGDNDADGFFYARLIKAA 443 >gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Corynebacterium diphtheriae NCTC 13129] gi|38200168|emb|CAE49849.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 485 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 102/454 (22%), Positives = 157/454 (34%), Gaps = 37/454 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ ++ V L S LS RD + TLR +D V Sbjct: 50 PRSVAFWVIQRVEIDAAYANLTLPKVLKQSK---LSGRDAAFATELTYGTLRTQGVLDTV 106 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L K ++ LR+ Q+LY V +A VD V + ++R VN Sbjct: 107 IAECSSRELEALKPEVRAALRLGAYQLLYTRVGAHAAVDTTVRIMEAIGQDR-AKGFVNG 165 Query: 127 ILRRVSREKIELLQR----------IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +LR +SR + IA P W G + A A Sbjct: 166 VLRTISRTSPQSWIEKLTPSGEVESIAFQHAHPAWIARSFSQIVGMNELEAALSADSERP 225 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + L + E A + + +L EG+ VQD + + Sbjct: 226 KVHLVARPGEMSAEELALIVGGDEGKYSPYAVYLESGDPGALEPVREGLAAVQDEGSQLI 285 Query: 234 VQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH 287 + LDLCA PGGK A L A D + + + + + Sbjct: 286 ARAVTEAPIHGEDQGKWLDLCAGPGGKAALLGAIARIDGATVDAVEVSKHRAKLIENIVR 345 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + D +D VLVDAPCS G +RR P+ W + DI + Q +L Sbjct: 346 GLPVKVTVGDGRSPGLAPGYDRVLVDAPCSGLGALRRRPEARWRKQETDIEELTKLQSQL 405 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + V+ GGIVV+S CS D +++ ++V ++LRS + + + Sbjct: 406 LESALRLVRTGGIVVYSTCSPDLRETRQIVDRILRSHEVE------ELNAAELVPSMENT 459 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P G D F LR+ Sbjct: 460 GEYKSVHMWPH--------RHGTDAMFFAVLRKK 485 >gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866] Length = 450 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 216/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAITDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EGV VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGVVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL RL+ A Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+PL + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLPLPVSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep ecotype'] gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep ecotype'] Length = 439 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 186/461 (40%), Gaps = 46/461 (9%) Query: 1 MKS-----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 MK N R + ++ ++ + S L+ + RD ++ + Sbjct: 1 MKPLPLPKQKNLRADCAWVIYQILEQGKSSRECLERVQRRH-----NARDNAWLQEMSLG 55 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R LP + L +L L K ++ L+ + + Q+ + V+++A V V A Sbjct: 56 VMRRLPLLQHWLRALLDRPLKGNKKVIEHLILLGLYQLNFSRVSNHAAVGETVAAA-SYL 114 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIA--GISIIPEWFKERLENFYGKERVLAISDACI 173 LVN++LR RE + S +P+W + +E YG + Sbjct: 115 NAAGLKGLVNAVLRNFQRENLADKPVDDAIINSGLPKWLYKAIEQAYG-AEADNVRAETN 173 Query: 174 SPLYIDLTV---------KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + I L V + A + + E I LPGF +G + Sbjct: 174 AMAPIWLRVNRQQVSFSAFTEALDKAEVKYTLSESHRNAIVLSQREDITGLPGFEKGHFA 233 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRC 281 VQD +A + N +LD CAAPGGKT ++ ALD RL+++ Sbjct: 234 VQDGAAQLAAHYLQPQANERILDCCAAPGGKTGHIVECAPDTEYVLALDADATRLKRVEE 293 Query: 282 NLDR--LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N+ R + + + K FD +L+DAPCS+TG IRRHPD+ W R +DI Sbjct: 294 NMTRLQHKVDIRQGDAANPESWWDGKPFDRILLDAPCSATGVIRRHPDIRWLRKANDIDN 353 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR++L +KPGG ++++ CS+ +++ +Q+ L +P L P+ Sbjct: 354 LAQLQRRILDTLWGLLKPGGTLLYATCSILPKENMAQIQQFLADTP-DASLSPILKTETP 412 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +ITP + MDGF+ L + Sbjct: 413 DKP---------GRQITPGEQQ--------MDGFYYARLVK 436 >gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus thermophilum H-6-12] gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus thermophilum H-6-12] Length = 430 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 99/450 (22%), Positives = 174/450 (38%), Gaps = 39/450 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M RL ++ +L + ++ L LL LS +++ + +V R+ +D Sbjct: 1 MEVRLKAAEILYDLEKREAYLNLLLRSRLPSY---NLSLKEKHFITELVYGVTRWKTTLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENRHFAK 122 + + + LLR+ I +L D V+ VE AKR + Sbjct: 58 YIWSRFVKR--DNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKRKVPKEAKLIN 115 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 V+ + + L IPE+ E +++ GK + I I + V Sbjct: 116 AVSRRMVKERNNLDLNLIPFHIRYAIPEFIFEEWQDYIGKGEAVKILGWLNKAHNIAIRV 175 Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASASIP 233 +E KL + L F G + +Q ++ +P Sbjct: 176 NTLKISVEDLKEKLKERGIKFKDGNLVTQALLIEDGFDFEKSDLFHNGYFVIQSEASMLP 235 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + V+DLC+APG K+ L + + K+ ++D++K R++ + N RL + Sbjct: 236 ALILNPEPGSRVIDLCSAPGLKSTHLAELMNNKGKIVSVDINKNRVKLVEENAKRLGISI 295 Query: 291 EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + D + FD VL+DAPCS G I P++ W +DI K + Q K+L Sbjct: 296 IETLAEDVLNLPDSLNGTFDRVLLDAPCSGLGVISHKPEIKWRLKREDIYKLSEMQIKML 355 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +K GG +V+S C++ ++E VV L +P +L+ K Sbjct: 356 ERAGKLLKKGGRMVYSTCTITWHENENVVLYFLERNP-EFKLIDFFYKGEKFP------- 407 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 G +R+ P + DGFF + Sbjct: 408 --GIMRVIPYKYK--------TDGFFISLI 427 >gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644] gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644] Length = 447 Score = 229 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 112/463 (24%), Positives = 191/463 (41%), Gaps = 42/463 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK N R ++ LL + + L+ S L +RD L+ IV ++ Sbjct: 1 MKKLNRNPRFLAVKLLERIEKNGSYSNLALNQTIKKSQ---LDERDVSLLTNIVYGVIQR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++ LD + + + + + +LL+ ++ Q LYLD + AV + +E AK + Sbjct: 58 KLTLEFYLDGFIKNR-RKVEPWVYELLKTALYQQLYLDKIPKRAVFNETIEIAK-VNGHE 115 Query: 119 HFAKLVNSILRRVSREKIELLQR-------IAGISIIPEWFKERLENFYGKERVLAISDA 171 + V IL + R+ + I+ S P+W E+L G E+ +++ + Sbjct: 116 GIRRFVTGILHEIERKGLPDPGNVKDSAEKISIESSTPKWLVEKLTEELGFEKTISLLKS 175 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFAEGVW 223 P + V T ++A+ + L+ I + G+ Sbjct: 176 INEPPAQSIRVNLAKNTVHQAVSALEKEGFKVSKSLVSPLGLRVSGGFIPQSDAYKRGLV 235 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRC 281 VQD SA + V + VLD CAAPGGKT Q+ +V ALD+ ++ + Sbjct: 236 TVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVLDSGRVYALDIHAHKVGLIEK 295 Query: 282 NLDRLHLY----AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N + + A+ A + ++ FD VL+DAPCS G +RR P+V + + D Sbjct: 296 NAELCGVTKYVTAKKTDARKAKEEFDEESFDKVLIDAPCSGLGLMRRKPEVKYDKHFKDS 355 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q +L Q VKPGG + +S C++ ++++ V L+ P ++ S Sbjct: 356 LSLHDVQVGILDQVAELVKPGGRLTYSTCTILNEENQATVDAFLKRHPEFYQIKTETSFK 415 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K + L+ I PD G DGFF L + Sbjct: 416 IKDERKTLGLT------IYPDDF--------GSDGFFIATLMK 444 >gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii FSL S4-120] gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii FSL S4-120] Length = 400 Score = 229 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 113/415 (27%), Positives = 190/415 (45%), Gaps = 40/415 (9%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107 + +V T + +D L L ++ LLR+SV Q+ +LD V ++A+++ A Sbjct: 2 LTELVYGTTQRKITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEA 58 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFY 160 + AK D ++ K VN +LR V R+ + +Q+IA + +PEW +R + Y Sbjct: 59 GDIAK-DLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQY 117 Query: 161 GKERVLAISDACISPLYIDLTVKFD---IETWAHKLNA-----VMLPTGGIRLKELPESI 212 G E++ I A + + + V E +LN L S+ Sbjct: 118 GLEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGISVTRNEFIDEALLVEKGSV 177 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 + +G +QD S+ + +NL+VLD CAAPGGKT + V AL Sbjct: 178 AETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHAL 237 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHP 326 D+ +++ + + RL L +DA + FD +LVDAPCS G +RR P Sbjct: 238 DIHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKP 297 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 D+ + + DI K A Q +L VK GI+V+S C++DK+++E V++ L P Sbjct: 298 DIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP- 356 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P+ + + + +I++ P + G DGFF +LR++ Sbjct: 357 EFKIEPV-----VLPEKLAQIKKDDYIQLLPTDI--------GSDGFFVSSLRKV 398 >gi|167855267|ref|ZP_02478036.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755] gi|167853631|gb|EDS24876.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755] Length = 432 Score = 229 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 127/458 (27%), Positives = 211/458 (46%), Gaps = 42/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R V++ ++ V+ + SL+ L+ A L +D V+ R L Sbjct: 1 MKKH-STRAVTAQIILQVLDQGKSLSTLIPE-----AQSQLDSKDLAWVQETTFGICRVL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++A++ ++ L K + LL V + Q+LY+ V +A VD V K K + F Sbjct: 55 PRLEAIIKLLVEKPLKNKTRLVHCLLLVGLYQLLYMRVPPHAAVDEVVNSTKVLKLD-SF 113 Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L N +LRR RE+ + ++ PEW +L+ Y R + ++ P++I Sbjct: 114 RALTNGVLRRFLREQEAILAKVDKHWQTLHPEWLVNKLKQAYPNWREIVDANNQKPPMWI 173 Query: 179 DLTVK-FDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + + L A L + S+ LP F +G VQDA Sbjct: 174 RVNAQRTNRADYVALLGDLAKNHKEATACVPDCAVLLDKAVSVSQLPHFKQGWVAVQDAH 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A +L N +LD CAAPGGKT ++ + V ALD+ + RL +++ NL RL+ Sbjct: 234 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLVRVKENLARLN 293 Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 A I ++FD +L+DAPCS+TG IRRHPD+ W R +DI + A Q Sbjct: 294 QTATVICGDASQPEQWLTSGEMFDKILLDAPCSATGVIRRHPDIKWLRKEEDIAELAELQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K+L + +KP G+++++ CS+ +++ + +Q L +P +LV +N Sbjct: 354 GKILKALWARLKPNGVLLYATCSVLPEENSQQIQHFLAQTP-EAKLVEIN---------- 402 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + E + +++ G DGFF L + Sbjct: 403 --VGGEQCL------MKQFFPKQDGGDGFFYAKLVKQA 432 >gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland 1988] Length = 399 Score = 229 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 188/414 (45%), Gaps = 40/414 (9%) Query: 50 RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108 +V T + +D L L ++ LLR+SV Q+ YLD V ++A+++ A Sbjct: 2 TELVYGTTQRKITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 58 Query: 109 EQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYG 161 + AK ++ K VN +LR V R+ + +Q+IA + +PEW +R + YG Sbjct: 59 DIAKNM-GHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYG 117 Query: 162 KERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIV 213 E++ I A + + + V E +LN + E S+ Sbjct: 118 IEQLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVA 177 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALD 270 + +G +QD S+ + +NL+VLD CAAPGGKT + V ALD Sbjct: 178 ETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALD 237 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + +++ + + RL L +DA + FD +LVDAPCS G +RR PD Sbjct: 238 IHEKKTKLIDEAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPD 297 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + + DI K A Q +L VK GI+V+S C++DK+++E V++ L P Sbjct: 298 IKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-E 356 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L P+ + + + +I++ P + G DGFF +LR++ Sbjct: 357 FTLEPV-----VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 397 >gi|260753395|ref|YP_003226288.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552758|gb|ACV75704.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 468 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 144/439 (32%), Positives = 216/439 (49%), Gaps = 24/439 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R + LL V+R+ + L ++ D+ LV A+ LR+ + Sbjct: 45 GLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLKQN----ADRALVHALAAAVLRWCHDL 100 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D ++D L + +LR+++AQ L L + + + D R Sbjct: 101 DQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQPAHVAIATVLPLV--DGGPRRLVHG 157 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 V L R + +P+ R E +G+ + A S A +DLT+K Sbjct: 158 VYGSLDRREGVALPEY------PTLPDETAYRWEKAWGEPMLAAASRALAEQPPVDLTLK 211 Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 ET W KL+ L G IRL E I L G+ +G WWVQD SAS+ +L G Sbjct: 212 NPEETAFWQEKLSGESLFAGHIRLPEGHPPIAELAGYQDGAWWVQDISASLAARLLGKGE 271 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 N ++LDLCAAPGGKT QL G +VTA+D++ +RL +L NL R+ L AE + D DY Sbjct: 272 NRTILDLCAAPGGKTMQLASQGWQVTAVDIAAKRLTRLHDNLKRMGLSAEVV-TADLADY 330 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 PK+ DA+L+DAPCS++G RRHPDVL+ + I A Q+KLL + +VK GG + Sbjct: 331 TPKEAVDAILLDAPCSASGIFRRHPDVLYRVSSRIITDMAEQQKKLLHRASQWVKKGGKL 390 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CSL+ ++ E V++ L ++S +++ ++ S EGW+RI P+ L Sbjct: 391 VYAVCSLEPEEGEAVIRDFLAHHSDYR----IDSLEKETLPAGLSPSEEGWLRILPENLA 446 Query: 422 KIDGVSSGMDGFFAVALRR 440 + G DGFF R Sbjct: 447 E----KGGNDGFFIAYFTR 461 >gi|56550913|ref|YP_161752.1| Fmu (Sun) domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56542487|gb|AAV88641.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 468 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 145/439 (33%), Positives = 217/439 (49%), Gaps = 24/439 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R + LL V+R+ + L ++ D+ LV A+ LR+ + Sbjct: 45 GLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLKQN----ADRALVHALAAAVLRWCHDL 100 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D ++D L + +LR+++AQ L L + + + D R Sbjct: 101 DQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQPAHVAIATVLPLV--DGGPRRLVHG 157 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 V L R + +P+ R E +G+ + A S A +DLT+K Sbjct: 158 VYGSLDRREGVALPEY------PTLPDETAYRWEKAWGEPMLAAASRALAEQPPVDLTLK 211 Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 ET W KL+ L G IRL E I L G+ EG WWVQD SAS+ +L G Sbjct: 212 NPEETAFWQEKLSGESLFLGHIRLPEGHPPIAELAGYQEGSWWVQDISASLAARLLGKGE 271 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 N ++LDLCAAPGGKT QL G +VTA+D++ +RL +L NL R+ L AE + D DY Sbjct: 272 NRTILDLCAAPGGKTMQLASQGWQVTAVDIAAKRLTRLHDNLKRMGLSAEVV-TADLADY 330 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 PK+ DA+L+DAPCS++G RRHPDVL+ + I+ A Q+KLL + +VK GG + Sbjct: 331 TPKEAVDAILLDAPCSASGIFRRHPDVLYRVSSRIIIDMAEQQKKLLHRASQWVKKGGKL 390 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CSL+ ++ E V++ L ++S +++ ++ S EGW+RI P+ L Sbjct: 391 VYAVCSLEPEEGEAVIRDFLAHHSDYR----IDSLEKETLPAGLSPSEEGWLRILPENLA 446 Query: 422 KIDGVSSGMDGFFAVALRR 440 + G DGFF R Sbjct: 447 E----KGGNDGFFIAYFTR 461 >gi|70733533|ref|YP_257172.1| sun protein [Pseudomonas fluorescens Pf-5] gi|68347832|gb|AAY95438.1| sun protein [Pseudomonas fluorescens Pf-5] Length = 441 Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 122/455 (26%), Positives = 199/455 (43%), Gaps = 35/455 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L ++ + RD+ + + T R+ PR+ Sbjct: 1 MNPRLAAAKALTAVLNGKASLNSSLPIQL-----DKVEARDRGFTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+LY V +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLLYARVPAHAAIGETVGCADKLKKP-WAKALL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LRR RE EL + P W ++ L+ F+ + + ++ P+ + Sbjct: 115 NAVLRRAQRESETLLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232 + + KL + + + SLPGFAEG VQD +A + Sbjct: 175 VNRRHHSRDAYLKLLSEAGVAAKACVYSQDGIVLDEALDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLY 289 +L VLD C APGGKT ++ V A+D+ +RL ++R NLDRL L Sbjct: 235 AAELLELAPGQRVLDACCAPGGKTCHILEVQPALAGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A D + K F +L+DAPCS+TG IRRHPD+ TR +DI A Q +L Sbjct: 295 AQLIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPEDIAALAQLQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GGI++++ CS ++ EV++ L +P EL + + Sbjct: 355 LDAMWQALEVGGILLYATCSTLPTENTEVIEAFLARTPGARELDIGGQLGQPAAGLKQ-- 412 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P ++ G DGF+ L ++ Sbjct: 413 ---------PH-GRQLLAQEGGHDGFYYAKLIKIA 437 >gi|238852568|ref|ZP_04642978.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri 202-4] gi|238834714|gb|EEQ26941.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri 202-4] Length = 438 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 191/457 (41%), Gaps = 45/457 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKL 123 L ++ + L L LL +S Q +L+ V A+ D A + AK+ K+N KL Sbjct: 60 QLKPLIKTKLR--DKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKKFAKKNSGSYKL 117 Query: 124 VNSILR------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN ILR +V L+ ++ P+W E L + +G+++ I P Sbjct: 118 VNGILRALERQGKVLPAPDNLVDYLSIKESFPKWLVEYLLDNFGEDQTKEILVRSNQPAA 177 Query: 178 IDLTVKFD---IETWAHKLNAVMLPTGGIRLKELP-----ESIVSLPGFAEGVWWVQDAS 229 + + + E L L + F +G +QDA+ Sbjct: 178 NSIRMAVEEGKFEEIKEALKKDGFDFKESCLTAHNLNLNKGGVAQTNLFKDGKITIQDAA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ V F + VLD C+APGGKT Q+ V ALD+ + +L ++ RLH Sbjct: 238 ASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKLTTGNVIALDIHENKLRLVKNAAKRLH 297 Query: 288 LYA-EDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +DA FD +LVDAPCS G IRR P++ + + +DI A Sbjct: 298 VSDKVKTKALDARKAQEYFTAGQFDKILVDAPCSGLGLIRRKPEIRYEKSLNDIKNLARI 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + GG +V+S C++ ++ E VV + L+ P ELVP+ Sbjct: 358 QLSILENISGLLTAGGELVYSTCTISLEEDEGVVNQFLKLYP-DFELVPVQVGKLP---- 412 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +RI P + G DGFF L++ Sbjct: 413 -----KQNMVRIFPS--------ADGSDGFFIAKLKK 436 >gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 421 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 110/453 (24%), Positives = 203/453 (44%), Gaps = 43/453 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + R ++ + V+ + SL+ AF D L++++V T+RF Sbjct: 1 MANNI-TRFIALEAIYSVIINKKSLS----------AFNYPKDNDTPLIKSLVFGTIRFY 49 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ ++ L S ++ + L+ + Q+LY +A +A + V + Sbjct: 50 HQLNDIVSKRLKHSFKKEDLDVHCLMLLGAYQLLYSKIAIHASIFETVNVVNALNKP-WA 108 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYID 179 LVN+ILR++ R+K L Q++ P W ++++ Y + + + +P+ I Sbjct: 109 KALVNAILRKIDRDKKILQQQVH--YSHPSWLVKKIKRDYPNDFETIFKQNNTQAPMTIR 166 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + +++ + +L + + + + ++ +L F +G +VQDASA + Sbjct: 167 VHTSLNLDHYQQQLQQEGISSQKLAITPQALVLDKATTVFNLVKFEQGACYVQDASAQLS 226 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 V L N +LD C+APGGK L KV ALD +RL K+ N RL + Sbjct: 227 VPLLNPKNTDLILDACSAPGGKATHLCELAPQCKVIALDNDNKRLIKISQNAQRLKITNI 286 Query: 292 DII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I D+ +LFD +L DAPCS+TG IRRHPD+ R DI Q+ +L Sbjct: 287 QTILGSAQNQDWWDSQLFDKILFDAPCSATGVIRRHPDIKLLRKPKDITTLVVLQKNILE 346 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +KP GI++++ CS+ K ++E+ ++ L + E+ I++ ++ Sbjct: 347 NLWQMLKPSGILLYATCSILKVENEQQIKYFLNTHYDAKEIK---------IELDWGINT 397 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ + +L Sbjct: 398 TVGRQQLP---------TDNFDGFYYAKIIKLT 421 >gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus coleohominis 101-4-CHN] gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus coleohominis 101-4-CHN] Length = 447 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 193/467 (41%), Gaps = 47/467 (10%) Query: 1 MKSGMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + + R ++ L V ++ L+ L + D+ LV +V L+ Sbjct: 1 MNNSIQNSPRNLALETLDKVFQRGSYSNLQLNETLKRHQ---LKEVDKRLVTTLVYGVLQ 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 ++ L ++ ++ LL +S Q ++D + ++A D A++ AK + N Sbjct: 58 HKLTLEYWLTPLVKRDP---DSWVKTLLMLSFYQYQFMDRIPEWAATDEAIKIAK-WRGN 113 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISI-------IPEWFKERLENFYGKERVLAISD 170 K V +L R+ IA IPEW L + YG+E+V + Sbjct: 114 PGIRKFVTGVLHSFLRQGPADPLEIADSIKRLSIIGSIPEWLVRCLLHQYGQEQVEKLVR 173 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGV 222 P + L V T + + L ++++ FA G+ Sbjct: 174 QINEPSRVSLRVNTARTTVQEAIQTLANEQIDVQQSKVAQDGLVVQSGNVLTSAAFANGM 233 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEK 278 +QD SA + V+ + VLD CAAPGGKT Q+ + +V ALD+ + ++ Sbjct: 234 VTIQDESAMLAVEALQLRGDERVLDACAAPGGKTGQIAAALDPAMGQVDALDIHQHKVRL 293 Query: 279 LRCNLDRLHLYA-EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 +R N++RL + ++DA + FD +LVDAPCS G IRR P++ + + + Sbjct: 294 IRKNMERLGVANRVVARQLDARQVDDYFTDESFDKILVDAPCSGIGLIRRKPEIRYDKTS 353 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + Q +L VK GGI+V+S C++ ++++E +Q L P L Sbjct: 354 STSSRLHEIQGTILNAVAPKVKKGGIIVYSTCTILQEENENTIQTFLAHHPNFQLLKTQT 413 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + K+ + + I P G DGFF L+R+ Sbjct: 414 ARAIKANRQ------QKTLTILPSDY--------GSDGFFIGTLQRI 446 >gi|241762323|ref|ZP_04760403.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373117|gb|EER62756.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 468 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 145/439 (33%), Positives = 217/439 (49%), Gaps = 24/439 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R + LL V+R+ + L ++ D+ LV A+ LR+ + Sbjct: 45 GLPVRKAALQLLEAVLRQGLPLEQVIGRITQGLKQN----ADRALVHALAAAVLRWCHDL 100 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D ++D L + +LR+++AQ L L + + + D R Sbjct: 101 DQLIDSATAKPLAP-DVKARMVLRMALAQKLVLKQPAHVAIATVLPLV--DGGPRRLVHG 157 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 V L R + +P+ R E +G+ + A S A +DLT+K Sbjct: 158 VYGSLDRREGVALPEY------PTLPDETAYRWEKAWGEPMLAAASRALADQPPVDLTLK 211 Query: 184 FDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 ET W KL+ L G IRL E I L G+ EG WWVQD SAS+ +L G Sbjct: 212 NPEETAFWQEKLSGESLFLGHIRLPEGHPPIAELAGYQEGAWWVQDISASLAARLLGKGK 271 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 N ++LDLCAAPGGKT QL G +VTA+D++ +RL +L NL R+ L AE + D DY Sbjct: 272 NRTILDLCAAPGGKTMQLASQGWQVTAVDIAAKRLTRLHDNLKRMGLSAEVV-TADLADY 330 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 PK+ DA+L+DAPCS++G RRHPDVL+ + I+ A Q+KLL + +VK GG + Sbjct: 331 TPKEAVDAILLDAPCSASGIFRRHPDVLYRVSSRIIIDMAEQQKKLLHRASQWVKKGGKL 390 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CSL+ ++ E V++ L ++S +++ ++ S EGW+RI P+ L Sbjct: 391 VYAVCSLEPEEGEAVIRDFLAHHSDYR----IDSLEKETLPAGLSPSEEGWLRILPENLA 446 Query: 422 KIDGVSSGMDGFFAVALRR 440 + G DGFF R Sbjct: 447 E----KGGNDGFFIAYFTR 461 >gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri CF48-3A] gi|300909760|ref|ZP_07127221.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus reuteri SD2112] gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri CF48-3A] gi|300893625|gb|EFK86984.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus reuteri SD2112] Length = 449 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 120/467 (25%), Positives = 200/467 (42%), Gaps = 47/467 (10%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK+ NAR ++ L V+ +D L+ +D+ L I+ L Sbjct: 1 MKTKFQPQNARELALVALKGVVENGAYSNLQVDQLLKRYP---LADKDRRLATNIIYGVL 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 + ++ L+ + R ++ LL ++ Q YL V D+AV D ++E AKR + Sbjct: 58 QHKLTLEYWLNGFVQG--KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKR-RG 114 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGIS-------IIPEWFKERLENFYGKERVLAIS 169 N K V +L + R+ + L++I +P W L YG+E + Sbjct: 115 NPGIRKFVTGVLHAILRKGLPDLRQIDERDLRLSIENSVPRWLVNELTREYGEEDTEKVL 174 Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEG 221 + P + + V D+ T L+A + ++ + I+S F G Sbjct: 175 QSINEPAHQVIRVNIVKTDLPTVKQTLDAAGIEYQESQVAQNALVITKGEIISSDLFKNG 234 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLE 277 +QD SA + V+ VLD CAAPGGKT Q+ V ALD+ + ++ Sbjct: 235 EITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALTNEDGHVDALDIHQHKVR 294 Query: 278 KLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + A + + + FD VLVDAPCS G +RR P++ +T+ Sbjct: 295 LIEKNARRLGVEKRVTAHALDAREVDQLFDDESFDKVLVDAPCSGIGLLRRKPEIRYTKT 354 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +D + Q +L + VK GGI+ +S C++ +Q++++ VQ L P ELV Sbjct: 355 LNDSKQLHKIQLAILNAIAAKVKKGGIITYSTCTILQQENDDTVQAFLAEHP-EFELVKT 413 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +A K D + + + I P + DGFF +L++ Sbjct: 414 TTAR-KVKDNRHSPT----LTILPSDFDS--------DGFFVSSLKK 447 >gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus caprae C87] gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus caprae C87] Length = 435 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 100/454 (22%), Positives = 195/454 (42%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + + ++ + ++ + ++ D+ L +V T++ +D + Sbjct: 5 VRAHAFETIQHILNEGAYSNLKINEVLSSNI---IADVDRNLFTELVYGTIKRKYTLDYI 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + ++QLL +S+ Q +YLD V D+A+++ AV+ AK+ + H +VN Sbjct: 62 LKPFVKTKIKG---WVRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGH-HNGNIVN 117 Query: 126 SILRRVSREKIELLQ-------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 ILR + R + Q RIA +P+W +G E+ I+ + ++P+ Sbjct: 118 GILRSLMRSDLPDFQEIRDDKKRIAIEYSLPKWLVNHWVTHHGLEKTEEIAQSLLAPVKS 177 Query: 179 DLTVKFDI---ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + KL L ++IV+ F +G +QD S+ Sbjct: 178 TVRANISRGSVDDIVTKLENEGFNVEKDDILPFCLHVSGQTIVNSRAFKDGYVSIQDKSS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + + + VLD C+APGGK + +V A D+ +++ ++ N+ +L Sbjct: 238 MMVAHIMKLGRDDKVLDACSAPGGKACHMAEILSPEGQVDATDIHLHKIDLIQHNIKKLK 297 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L + DA + K+++D +LVDAPCS G +R P++ +T+ D I Q ++ Sbjct: 298 LDNIHAFQHDATE-PYKEMYDKILVDAPCSGLGVLRHKPEIKYTQTQDSIQSLVDLQLQI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K GG + +S C++++ ++E V+ L+ + E P Sbjct: 357 LENIKHNIKSGGTITYSTCTIEQMENENVIYTFLKQN-EEFEFEPFQHPVTGKQV----- 410 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P + DGFF ++R Sbjct: 411 ---KTLQILPQDFDS--------DGFFITQIKRK 433 >gi|302341793|ref|YP_003806322.1| sun protein [Desulfarculus baarsii DSM 2075] gi|301638406|gb|ADK83728.1| sun protein [Desulfarculus baarsii DSM 2075] Length = 443 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 114/459 (24%), Positives = 186/459 (40%), Gaps = 40/459 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + +L + L LL + RD+ + + + LR +D Sbjct: 1 MNPRLTALDVLVQLESSPKHLDKLLSRAFQRHPAAQ--ARDKAMATNLTHTVLRHRAWLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +L ++ L + ++ LR+ A+++ L +A V VE K + + LV Sbjct: 59 HLLTPLVSRPLAKLDAPVRAALRLGAAELVVLATPAHAAVGATVEAVKAGPAAK-ASGLV 117 Query: 125 NS---------ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N + + L R+ P W E L +G E+ A + A S Sbjct: 118 NGVLRALTRALPAAAQAEPPGDELDRLCLRHSHPRWLLEPLARRFGLEQAAAWAQANQSQ 177 Query: 176 LYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + L V + + A L + ++ + LPGF EG+W Sbjct: 178 PPLCLRVNALKASPAQVAESLAPVCEAVEAHALAPEALIVRGAAGPLWDLPGFREGLWQA 237 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 QDA A +L G ++VLDLCA GGK+ L + + ++ A+D S RLE L N Sbjct: 238 QDAGAQALGRLLGVGPGMTVLDLCAGAGGKSGHLAALMANQGRIVAVDDSAGRLEALAEN 297 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + RL + + + D + F+A+LVDAPCS G I R PD+ W R D A Sbjct: 298 MARLGVTIVEPVLADGAAWDGGGRLFEAILVDAPCSGLGVIGRRPDIRWRRSPADSAAMA 357 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q L + PGG +V+ C++ + ++E V + +L + P L ++ + Sbjct: 358 RIQLALARNAARLLAPGGALVYCTCTVAEAENEGVARALLAARPE------LRPSWAGAE 411 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +G+ R P + D FFA L + Sbjct: 412 AAGEMIGADGFWRSFPRPMAA--------DSFFAARLVK 442 >gi|315656712|ref|ZP_07909599.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492667|gb|EFU82271.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 520 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 107/475 (22%), Positives = 181/475 (38%), Gaps = 47/475 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ L V + +L + L +RD +V TLR R DA Sbjct: 45 PARDVAFQALRRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDA 101 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + + L +LR+ + QIL + V DYA VD V+ A RD+ + A +VN Sbjct: 102 IIGLLSDRDIAALDPELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVN 160 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169 ++LR+V+ + + PEW L + + + Sbjct: 161 AVLRKVTEHDLSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGELPGLL 220 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220 A P Y+ L + + + A + L Sbjct: 221 HAQNRPAYVTLCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVER 280 Query: 221 GVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 G+ V+D + + ++ + +DLCA PGGKTA V A +VS Sbjct: 281 GLAGVEDEGSQLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVS 340 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R E +R + +++ D D+ D VLVDAPCS G++RR P+ W Sbjct: 341 PHRAELVRDSTKAFTDQIVQVLQGDGRDFGGLHPGKADRVLVDAPCSGLGSLRRRPEARW 400 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + D+ Q+ LL + VKPGG+V ++ CS ++ +VV+ +++ L Sbjct: 401 NKSATDLKDLTALQQDLLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLRVL 460 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 A ++ L P ++++ PD G D F +++ + Sbjct: 461 DAPAVAREIIVNSEHDLGPGPYLQLWPD--------RDGTDAMFLALIQKKSPTE 507 >gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816] Length = 399 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 189/414 (45%), Gaps = 40/414 (9%) Query: 50 RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108 +V T + +D L L ++ LLR+SV Q+ +LD V ++A+++ A Sbjct: 2 TELVYGTTQRKITLDYYLAPFLNKEP---DNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 58 Query: 109 EQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYG 161 + AK D ++ K VN +LR V R+ + +Q+IA + +PEW +R + YG Sbjct: 59 DIAK-DLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQYG 117 Query: 162 KERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIRLKEL-----PESIV 213 E++ I A + + + V E +LN + E S+ Sbjct: 118 IEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEKGSVA 177 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALD 270 + +G +QD S+ + +NL+VLD CAAPGGKT + V ALD Sbjct: 178 ETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTGMVHALD 237 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + +++ + + RL L +DA + FD +LVDAPCS G +RR PD Sbjct: 238 IHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGFGVLRRKPD 297 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + + DI K A Q +L VK GI+V+S C++DK+++E V++ L P Sbjct: 298 IKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVLRAFLEKHP-E 356 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L P+ + + + +I++ P + G DGFF +LR++ Sbjct: 357 FTLEPV-----VLPEKLAQIKKDDFIQLLPTDI--------GSDGFFVSSLRKV 397 >gi|78212348|ref|YP_381127.1| sun protein [Synechococcus sp. CC9605] gi|78196807|gb|ABB34572.1| sun protein [Synechococcus sp. CC9605] Length = 445 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 200/465 (43%), Gaps = 59/465 (12%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R ++ +L V L+ + R L D+ LV + +R + Sbjct: 11 GLLPRRLAWDVLQAV-AAGAYADVALERVLRE---RDLKPSDRGLVTELAYGAIRQRRTL 66 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 DA LD + ++ L+ LL V + Q+L + + D A V+ AVE AK K A Sbjct: 67 DAWLDRLGKVPALKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAVELAKTSKGLARLAP 126 Query: 123 LVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +VN +LR + +L ++A +P+WF + L + G E A++ AC Sbjct: 127 VVNGVLRAALRAREAGETLQLPNDLPAQLALAHSLPDWFTQLLIEWRGVEGAAAVASACN 186 Query: 174 SPLYIDL----------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V+ D+ +++ G+R+ + PG+AEG W Sbjct: 187 RVPDLDLRVNRLRSSPAQVQQDLAAAGISSESIVGCPDGLRISGHSGDLRHWPGYAEGHW 246 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLR 280 VQD SA + +LD CAAPGGK L A++ A+D S RL+++ Sbjct: 247 CVQDCSAQWIAPVLDPKPGDRILDACAAPGGKATHLAELVGDQAEIWAVDRSAGRLKRVA 306 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L + + + DA + ++ F +L+DAPCS GT+ RHPD W Sbjct: 307 ANAARLGLASINALAADAANLLEQRPQWRESFQRILIDAPCSGLGTLARHPDARWRVTPQ 366 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I Q+ LL + + P G++V++ C++ +++ +Q +L+ P Sbjct: 367 SIRGLLPQQQALLDGLLPLLAPQGVLVYATCTIHPDENQAQIQALLKRHP---------- 416 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L E ++ PD +SG DGF++ L+R Sbjct: 417 ----------TLRLEQESQLWPD-------QASGGDGFYSAVLQR 444 >gi|66043288|ref|YP_233129.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae B728a] gi|63253995|gb|AAY35091.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 448 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 199/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + L+ L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHRRDQYLELLDTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLDGVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|146278958|ref|YP_001169117.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557199|gb|ABP71812.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 422 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 140/439 (31%), Positives = 219/439 (49%), Gaps = 32/439 (7%) Query: 4 GMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 GM AR ++ LL V+ +R L+ + ++ + + LR L Sbjct: 13 GMADEARGMAVALLDAVLGERRLLSQAV------GELPSAGPAERARAQRLALTALRHLD 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +L L + P +++ +LR++V ++ A + VV+ AV+ A+R + +H A Sbjct: 67 PADRLLSPHLRKAPP---LTVRNILRLAVVEMAVEGAAPHGVVNAAVDLARRGRRTQHLA 123 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LR+++ L +P W ++ L +G+ V AI + +DLT Sbjct: 124 GLVNAVLRKIAPASFAGLP----AQRMPMWLRQPLVRRWGRGVVAAIEAVQAAAPPLDLT 179 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 K L P + +LPGF G WWVQDA+A++ V+L Sbjct: 180 AKPGRIAPGEPLPTGSFRL------REPGQVSALPGFEAGDWWVQDAAAALAVRLLDPQP 233 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 + DLCAAPGGKT QL +GA+VTALD+S+ RL +LR NL R L AE + Sbjct: 234 GERIADLCAAPGGKTLQLAAAGAEVTALDLSEPRLVRLRENLARTGLQAEVV--AADLLA 291 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FDAVL+DAPCS+TGTIRRHPD+ + +D ++ Q +L + + +KPGG + Sbjct: 292 WEGGPFDAVLLDAPCSATGTIRRHPDLPFVKDGSELPALVALQSAMLDRALGMLKPGGRL 351 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VF CSL +++ E + +L P + + P + A + + PEG +R+ PD Sbjct: 352 VFCTCSLLEEEGEAQLSALLERHP-ALRVEPPSLAGIE----PGWVGPEGGLRLRPDHWA 406 Query: 422 KIDGVSSGMDGFFAVALRR 440 + GMDGF+ V +R+ Sbjct: 407 EA----GGMDGFYMVRVRK 421 >gi|302186426|ref|ZP_07263099.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae 642] Length = 441 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 122/456 (26%), Positives = 196/456 (42%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + LN L + P + SLPGF EG VQD +A Sbjct: 174 RVNRRHHRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFTEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT + + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHFLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 DAELIAADARETTQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQT 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552] gi|169293384|gb|EDS75517.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552] Length = 481 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 106/450 (23%), Positives = 195/450 (43%), Gaps = 52/450 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L + L L+ +S LS+ D+ LV IV T++ + ++ Sbjct: 66 AREVALEILLKYHNEHSYLNITLNEYLKNS---TLSRNDKDLVTRIVYGTVQNMIYLEYQ 122 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L+ + + + K + +L +S+ Q+++LD V +YA++D AV+ AK+ +N + K VN Sbjct: 123 LEPYIKN--KKVKSREKMILLMSLYQLIFLDKVPEYAIIDEAVKLAKK--KNFYAGKFVN 178 Query: 126 SILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +ILR R ++ + + P W + Y E I +P Sbjct: 179 AILRNYLRNGKRKIETKDELEKLSIETSHPLWLVKMFTKQYDYETAKKICIHDNTPPGRT 238 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 V + T + L +I F EG+ +QD S+ + L Sbjct: 239 ARVNTLKTNKNTLLKEGCFENGNLAPDALLYNAGNIAESTYFKEGLVTIQDESSQLVAPL 298 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 + VLD+C APG KT L + + K+ A D+ + +++ ++ NL RL++ ++ Sbjct: 299 LSPSEDDLVLDMCCAPGSKTTHLAALMNNKGKIIACDLFEHKIKLVKENLKRLNISNVEL 358 Query: 294 IEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 +DA K FD +L+DAPCS G ++R P++ + + + Q KLL Sbjct: 359 HAIDATTLKEKYLEGTFDKILLDAPCSGLGVMKRKPEIKYHDSSV-MDTIIPLQAKLLDN 417 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +K G +V+S C+++K+++E++++K L P + Sbjct: 418 AYYLLKNNGKMVYSTCTINKKENEQMIKKFLDKYPDMKIVEE------------------ 459 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P + + DGF+ L + Sbjct: 460 --RKILPFVYDS--------DGFYMCKLEK 479 >gi|90415406|ref|ZP_01223340.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium HTCC2207] gi|90332729|gb|EAS47899.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium HTCC2207] Length = 439 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 118/457 (25%), Positives = 215/457 (47%), Gaps = 37/457 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R+ + +++ V+ + SL+ LL + ++D L + + TLR+ P I+ Sbjct: 1 MNTRVAVAEVIAQVL-RGKSLSALLPEYASK-----VVEKDVGLFKQLCFGTLRWYPAIE 54 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +L ++ + K++ +Q LL + Q+++ +AD+A ++ V + K LV Sbjct: 55 LLLQELMQKPMREKEFEIQGLLACGLYQLMHTRIADHAAINETVTAVTKLKRP-WAKGLV 113 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R++ EL ++A + P+W L +G + + A + L Sbjct: 114 NAVLRNFLRQRTELETKLAKNPVFVRAHPQWLLNDLFTSWGSAVAIDVLAANNEQAPMTL 173 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASAS 231 V + + +L+A + + + + +LPG+ G VQD +A Sbjct: 174 RVNQLQGSRDEYLQQLSAADIRAQTTQFSEQGIQLQSAIDVATLPGWDSGAVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHL 288 + L + VLD C APGGKT ++ + ++ A+++ RR+ ++ NL RL L Sbjct: 234 LTAALLELEPDQQVLDACCAPGGKTCHILETQPQLSKLVAVELESRRMPRVEENLRRLGL 293 Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A+ ++ D+ K F +L+DAPCS++G IRRHPD+ R T DIVK A Q + Sbjct: 294 KADLVVNDASATADWWDGKPFQRILLDAPCSASGVIRRHPDIKLLRKTTDIVKLAELQLQ 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + GGI++++ CS+ Q++++V++ L + L ++A SI+ Sbjct: 354 LLHSLWQTLDEGGILLYATCSVLPQENDQVIETFLAET----SLATTSAAELYSIEAEWG 409 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ P G DGF+ LR+ Q Sbjct: 410 TKTAFGRQLFP--------KIDGNDGFYYSRLRKTSQ 438 >gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittEE] gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus influenzae PittEE] Length = 451 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 215/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF ++L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 ++ + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NLQKNALETYRALLEEQGISAKTSHHPNALYLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + ALDV RL+++ NL RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLARLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEISKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q+ L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix] gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix] Length = 451 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 128/451 (28%), Positives = 194/451 (43%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + V+ + SLT ++ A L+ RD V+A+ TLR+ P++ A+ Sbjct: 19 PRQRALEAAEGVVLQGHSLTRAVE-----HATEGLNARDAAWVQALAYTTLRWYPQLSAL 73 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++ L L +K + LL +A++++ D+A V E A+ L+N+ Sbjct: 74 VNGFLERPLRKKDAVIGVLLAQGLAELMHFSTRDHAAVRETAELARAIHRP-GAVGLINA 132 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLT 181 +LRR RE+ + + A +PEW E + + + + A + + Sbjct: 133 VLRRAQREQDALEAAVREDPALRFAVPEWLLETIRASWPDDWETLLEAATRPAPMTLRVN 192 Query: 182 V-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPV 234 + + E L A P E P + LPGFAEG VQDASA Sbjct: 193 LSRTSREEALQALVAAGHPAQAHPQLEAALTLDEPADVAQLPGFAEGRLSVQDASAQWAA 252 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYA- 290 L VLD CAAPGGKT L+ ++TALD RL ++R NLDRL A Sbjct: 253 VLLDPQPGERVLDACAAPGGKTGHLLERAGGDLQLTALDSDAERLVQVRENLDRLGFAAQ 312 Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 D + + FDA+L+D PCS+TG IRRHPD+ R DDI + A Q ++L Sbjct: 313 LTAADVADPDAWWDGRPFDAILLDVPCSATGVIRRHPDIKTLRRADDIPRLAAEQARILE 372 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++PGG ++++ CSL ++++ VV L P L P Sbjct: 373 AAWGLLRPGGRLLYATCSLLSEENDAVVAGFLERMPDARALEP----EGGPPIAGAHARS 428 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 GW + G DGF+ L + Sbjct: 429 VGW---------ALPLGLEGGDGFYYALLTK 450 >gi|315497067|ref|YP_004085871.1| sun protein [Asticcacaulis excentricus CB 48] gi|315415079|gb|ADU11720.1| sun protein [Asticcacaulis excentricus CB 48] Length = 464 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 145/440 (32%), Positives = 218/440 (49%), Gaps = 23/440 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR+ + L+ + KR + F LS+ ++ A+ + LR L ++ Sbjct: 42 GIAARVAAITLVEAALEKRSGFDEA----AASADFLKLSETERAFAGALALLVLRRLGQL 97 Query: 64 DAVLDFVLISSLPRKKY-SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 D V+ + +++QLLR+ +AQI ++ V D+A V V+ A+R+ + R F Sbjct: 98 DHVI----HKKTQKMPPEAVRQLLRIGMAQIFFMQVPDFAAVSTTVKIAERENKTRPFKG 153 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 L+N+ILR + R+ + +P+W +R YG+E ++ DL+ Sbjct: 154 LINAILRGLIRDGKLSDVNPKRL--VPDWLWQRWVQTYGEENAAGMASVLTEEPATDLSF 211 Query: 183 --KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 D + A L + L + + G WWVQD +A+ PV L G L Sbjct: 212 RNPTDRDGLAEALQGEAVGP-VNLRSSLRGDLRQWADYDAGKWWVQDIAAATPVNLLGDL 270 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 N + LD+CAAPGGKT QLI GA+ A+D SK RL+++ NL R+ + AE I DA Sbjct: 271 NGKTALDVCAAPGGKTLQLIAKGAQTVAIDRSKNRLKRVEDNLKRIGMSAE-IHNADAST 329 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + + FD VLVDAPCS+TGT RR PDVLW D+ K A Q +LL VKPGG Sbjct: 330 FDDPRAFDVVLVDAPCSATGTYRRQPDVLWATRPADVAKLADVQHRLLDALAPRVKPGGD 389 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 ++ CSL++++ E + LR + LV + I A + +PEGW+R+ P Sbjct: 390 FLYCTCSLEREEGETQILAFLRRNK-DFTLVKHTADQHPDIP-AASFAPEGWLRLLPHQ- 446 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G DGFF L+R Sbjct: 447 -----RKGGQDGFFVAHLKR 461 >gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515] gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515] Length = 437 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 116/464 (25%), Positives = 189/464 (40%), Gaps = 60/464 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +G R S +L V I L+ + F L D + + +R+ Sbjct: 1 MATGYLQRKASWEILLKV-SSGIYSDHALEKVLKNYEFNSL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +D + S ++ L+ LL + + Q+L +D + A + VE AKR + Sbjct: 57 KFLDTWIDHISKLSHQKQPPKLRWLLHIGLYQLLKMDKIPFPAAISSTVEVAKRTDL-KG 115 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR R + + +P W + N+ G + I Sbjct: 116 LAGTVNAILRNTVRNIERDNCPKISTDEMEKLSCLESLPLWLVTEIVNWVGIKEAKNIFK 175 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAE 220 A IDL + + +LN + I L P SI +LPG+ + Sbjct: 176 AFNKKPTIDLRINSLKTNFNKILKELNECNIQAEPINQLNNGVALNSNPRSIKNLPGYKD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G+W VQD S+ L +LD C+APG KT L + A++ A+D S++RL+ Sbjct: 236 GLWVVQDRSSQWVAPLLNPKKGEKILDACSAPGSKTTHLAALVNDDAEILAVDRSEKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL+RL++ + +E DA K FD +L+DAPCS GT R+PD W+ Sbjct: 296 ILQSNLERLNIKSVKTLEADATTLIDIKPNLASYFDKILIDAPCSGIGTFARNPDTRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D I + Q LL +K G +V+S C++ ++ ++++ L + Sbjct: 356 SKDKINQLIILQEGLLDSIFPLLKKNGTLVYSTCTICPDENNLLIRRFLSKNKE------ 409 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 L + +I P + DGF+A Sbjct: 410 --------------LKLDSERQILPRFDKP-------GDGFYAA 432 >gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54] gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila LSv54] Length = 454 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 210/465 (45%), Gaps = 34/465 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ +R +++ L V +K+ + +L+ + L+ R++ L +V LR Sbjct: 1 MKTS--SRYIAAETLCQVYKKQQPVKPILEKLCQ---QKQLNPRERSLAMNMVFGVLRKR 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + L + + Q L V + Q+ +LD + + A+V+ AV K K ++ Sbjct: 56 QYLDILLRKLSTVRLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVNSCKTAKVHKR 115 Query: 120 FAKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 VN ILR +R+K + ++ I P +R + +G E+ I + Sbjct: 116 LHGFVNGILRNATRQKEALANGMKEQEQEIHTTPSGLFKRWQERFGLEKARYICEINGEE 175 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQ 226 + L V I+ + L + + +++ I +PG+ +G++ VQ Sbjct: 176 PPLTLRVNSTKTSIDDFEALLTREGITGTRGPAPESLIIEDYQGLIGDIPGYKDGLFQVQ 235 Query: 227 DASASIPVQLFGT-LNNLSVLDLCAAPGGKTAQLIVSGAKV----TALDVSKRRLEKLRC 281 D++A + L + LD CA GGKT+ +I GA A++ +R EK Sbjct: 236 DSAAQLASLLLLPIKSGGHYLDACAGLGGKTSHIIQLGADKEIKVIAVEPDAKRKEKFIT 295 Query: 282 NLDRLHLYAE---DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N++RL + E + F + FD +LVDAPCS TG IRR PD+ W R +D + Sbjct: 296 NIERLFTHHEVELHPTSLQEFKASNTQAFDGILVDAPCSGTGVIRRQPDIRWNRKEEDFL 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q ++L + P GI+V++ CSL+ +++E++++K L P L + Sbjct: 356 QKQIIQLEILSLAAEMLAPTGILVYATCSLEIEENEDLIKKFLLLFPDFY-LTDCQNYLP 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + + + +G D S +DGFFA L R + Sbjct: 415 EEVGEHIRPAKDG------DGSFFAPLPSKRLDGFFAARLARRDK 453 >gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus JV-V01] gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus JV-V01] Length = 427 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 122/443 (27%), Positives = 202/443 (45%), Gaps = 43/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + L+ S LS DQ L IV T+++ ++ L ++ + L Sbjct: 4 VLDQGSYSNISLNNSLKHS---NLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTE 60 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRHFAKLVNSILRRVSRE- 134 K ++ LL +S+ Q+++LD V D AV+D A + AK+ K + +LVN ILR +R Sbjct: 61 K--YIKPLLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRRG 118 Query: 135 -----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIE 187 + ++ ++ +PEW + L + +G ++ ++ ++ P + ++ D E Sbjct: 119 VILPAENNPVKYLSVKESVPEWLVQYLIDNWGLDKAKSVLNSINEPAKNSVRISKLADKE 178 Query: 188 TWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 +L + I F EG +QD +AS+ V+ F + Sbjct: 179 QVFAQLERDNYQPQWSKLSSDDVILSHGGISESDLFEEGKLTIQDEAASLVVEAFDFEQD 238 Query: 243 LSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF 299 VLD C+APGGKT Q + VTALD+ ++L +R N R+H+ DA Sbjct: 239 EHVLDACSAPGGKTVQIAESIVNGDVTALDIHDKKLRLVRDNAQRMHVANKVKTKACDAR 298 Query: 300 DYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 F +LVDAPCS G +RR P++ +T+ D+ Q +L S +K Sbjct: 299 KATEIFAAGEFTKILVDAPCSGLGLLRRKPEIRYTKRQQDLQNLQKIQLAILTAVSSLLK 358 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G +V+S CS+ +++EEVV+K L++ P ELVP + S G ++I Sbjct: 359 KNGELVYSTCSISMEENEEVVKKFLQAHP-DFELVPFKLTKLE--------SKTGMLKIM 409 Query: 417 PDMLEKIDGVSSGMDGFFAVALR 439 PD+ G DGFF + Sbjct: 410 PDL--------DGNDGFFIAKFK 424 >gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327] gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327] Length = 428 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 189/457 (41%), Gaps = 53/457 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR ++ +L + + S LL+ S L + D+ L R +V TL++ + D Sbjct: 1 MTAREIALRVLIDLDGMKKS-EELLNRMLERS---SLERNDRALARELVAGTLKYRLQCD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 V++ + L+ +LR+ V Q+L+LD V A V+ +V+ A++ K H AKL Sbjct: 57 FVIERFYRHDYAKAAEVLKHILRLGVYQLLHLDRVPRSAAVNESVKLARKFKG-EHLAKL 115 Query: 124 VNSILRRVSREKIELLQRIAGI---------SIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR +S+ I+L A + PEW R YG E + Sbjct: 116 VNGLLRNLSKATIDLEGWTADLPEAKRLSILYSYPEWLTSRWIANYGAETAAKMLAYGNQ 175 Query: 175 PLYIDLTVK---FDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 P + D ET V G P +GV VQ Sbjct: 176 PPATAYRINLLKSDPETLLATPELSDAKRVSDDEGLGSFFFSKSFDRMEPLLRDGVVSVQ 235 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 + + + L +V+DLCAAPGGK+ + + + ++ ALD + ++E+L N Sbjct: 236 NPTQGLACLLAAPQPGSTVVDLCAAPGGKSTFMAELMQNRGRIIALDRTPAKVERLASNA 295 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L + + E DA + + D VL+DAPC+ TG + R ++ W + + + Sbjct: 296 QALGITIIEPREGDALTFELEGAVDTVLLDAPCTGTGVLGRRAELRWRTTPEKLWELVEL 355 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L S + GG++V++ CS++ +++E+ + L+ P V Sbjct: 356 QAAMLDHAASLLPAGGVLVYATCSVEPEENEQQAEAFLKRHPEFV--------------- 400 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E P G DG FAV R+ Sbjct: 401 -----AEQSRLTLPG-------AHEGFDGGFAVRFRK 425 >gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1] gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1] Length = 451 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF ++L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+D+PCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862] Length = 457 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 115/463 (24%), Positives = 193/463 (41%), Gaps = 45/463 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 NAR ++ L + R L+ L +RD L+ +V ++ ++ Sbjct: 15 HNARAMAVRTLEKI-RNGAYSNLQLNNTVK---QAELDERDVHLMTTMVYGVIQRRMTLE 70 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L + + +++LL +S+ Q+ +LD V +A+ D A+ AKR + + K Sbjct: 71 YWLTPFVKKP-EKLDAWVRELLYISLFQMKFLDKVPTHAIFDEAINIAKR-RGHDGVRKF 128 Query: 124 VNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 V +L R E + ++R++ + +PEW +L G E+ I+ A Sbjct: 129 VTGVLHAIDREGVRSFDEITDKVERLSIEASLPEWLINQLTTELGWEKASRIAMAINDAP 188 Query: 177 YIDLTVKFDIETWAHK---LNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWVQDA 228 V + T A L A ++ + S F +G+ +QD Sbjct: 189 AQSARVNLAVTTVAEATDILEAEGFTVTPSKVTPDALLLSGGHVASSQAFKDGLVTLQDE 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNL 283 SA + ++ VLD AAPGGKT Q+ G V ALD+ ++ + N Sbjct: 249 SAMLMAPSLDIHPDMQVLDAAAAPGGKTTQIATYLNATEGGIVEALDIHDHKVGLINQNA 308 Query: 284 DRLHLYA-EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 +RLH+ +DA + FD +LVDAPCS G +RR P++ + + D + Sbjct: 309 ERLHVADRVHARTLDARKVDEAFADEQFDRILVDAPCSGFGLLRRKPEIRYDKTMADSLS 368 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L +K GG +V+ C++ + ++E+VV + L P ELVP +AY Sbjct: 369 LQKIQLGILEAAAPKLKAGGRMVYGTCTILQSENEDVVDQFLAEHP-DFELVPTYTAY-- 425 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A G + + PD E DGFF L++ Sbjct: 426 ---DLEAQDDRGMVHMFPDDFES--------DGFFIATLQKKA 457 >gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus amylolyticus DSM 11664] gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus amylolyticus DSM 11664] Length = 447 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 125/459 (27%), Positives = 205/459 (44%), Gaps = 43/459 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +AR ++ L V+ L+ S LS DQ L IV T+++ Sbjct: 8 STTKSARAIALETLIRVLENGSYSNISLNNNLKHS---NLSVADQNLATKIVYGTIQYKI 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENRH 119 ++ L ++ S + K L+ LL +S QIL+LD V + AV+D A + AK+ K++ Sbjct: 65 YLEYQLHDLIKSKITEK--YLKPLLLMSAYQILFLDKVPNRAVLDEANKLAKQFGKKHSS 122 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISI------IPEWFKERLENFYGKERVLAISDACI 173 +LVN ILR ++R L + ++ P W E + +G+ R I + Sbjct: 123 GFRLVNGILRSLTRRGPILPDKNDLVNYLSVKESFPRWLVEYFISLWGEARTEKILASYN 182 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQ 226 + L++ D E L +L I S F +G +Q Sbjct: 183 ETAKNSVRLSILQDEEKTVAALKQAGYEPTPSKLAANVAILVHGGIASSSLFKQGKLTIQ 242 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLD 284 D +AS+ V F N VLD C+APGGKT Q + +VTALD+ ++L ++ N Sbjct: 243 DEAASLVVDAFDFKGNEKVLDACSAPGGKTVQIAEHLQTGEVTALDIHDKKLRLVQQNTK 302 Query: 285 RLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+++ I A DY K+ F +LVDAPCS G +RR P++ +T+ +D+ Sbjct: 303 RMNVADKVKTVAIDARKADDYFSKQQFAKILVDAPCSGLGLLRRKPEIRYTKSKNDLFSL 362 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L ++ G +++S C++ K++ E+V++K L + P + Sbjct: 363 AKIQLAILNHVSCLLENDGELIYSTCTISKEEDEDVIRKFLAAHPDFA---------LQP 413 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + S G ++I PD G DGFF L+ Sbjct: 414 FKLEKISSKTGMLKILPDEY--------GSDGFFIAKLK 444 >gi|313113577|ref|ZP_07799165.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium cf. prausnitzii KLE1255] gi|310624092|gb|EFQ07459.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium cf. prausnitzii KLE1255] Length = 444 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 92/441 (20%), Positives = 170/441 (38%), Gaps = 39/441 (8%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 + +LD E + L RD+ AI L +D +L L L + Sbjct: 17 EQDGFSNLVLDAELKR---QQLEGRDKAFASAIFYTVLEHRGTLDYILCQFLPKGLAKLD 73 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 ++++LR ++AQ Y+ V A V+ AV+ + K++ + LVN++LR+ + Sbjct: 74 APVREILRAALAQARYMQVPVSAAVNEAVKLTRAFKKS-SASGLVNAVLRKACNYDLSTA 132 Query: 140 QRIAGISII------PEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + E L Y + L I L + Sbjct: 133 SFKNEVERLMVLGSAGRDVAEFLHKNYP-DEALDILTYKADGGMTSLRANPLKGSADELC 191 Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 KL A + S F +G + V+ ++ + + Sbjct: 192 AKLLASGAKEAKRGIVPGSVLARFEGSPAENELFRQGYFHVEGQASQLAALCVDAQPGET 251 Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+DLCAAPGGKT + + S ++ + D ++ R+ +R + R+ L + + DA Sbjct: 252 VIDLCAAPGGKTILLAEQMHSTGRLYSCDAAENRVGLIRTAVQRMGLTNVEALCNDATKV 311 Query: 302 CPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGG 359 P D +L D PCS G + + PD+ + + + + Q +L +K GG Sbjct: 312 NPALPQADRILADVPCSGLGILAKKPDLRYKKLEPAREAELLATQSAILDTAAQLLKAGG 371 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S C++D ++++ + L P + P + + M G + + Sbjct: 372 RLVYSTCTIDPAENQQQIAAFLARHPEFTVVEPAAA-----LPAGMTAGEHGALSV---- 422 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 +GMDGFF A+++ Sbjct: 423 -----PTRTGMDGFFLCAMQK 438 >gi|325123992|gb|ADY83515.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 434 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 208/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ ++ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTESLCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + L E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLVKLQSLEIQARACTLSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LN+ V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNDKIVVDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATQWTPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + K +P E+ ID + Sbjct: 358 DHMWQQLKVGGTLLYITCSILKAENEQQMMKFFAENPNAKEIK---------IDADWGVE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ ++++ Sbjct: 409 QTHGRQLLPQAQSG--------DGFYYCKIQKIA 434 >gi|71904040|ref|YP_280843.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS6180] gi|71803135|gb|AAX72488.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS6180] Length = 452 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 36/450 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L + + L+ + + A LS +D+ L+ IV T+ ++ L Sbjct: 22 RGKALLTLEHIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWYL 78 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + LL +S+ Q++YLD +A+V+ AV AK + K VN+ Sbjct: 79 AHYV-KDRDKLDKWVYYLLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNA 137 Query: 127 ILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLY 177 ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 138 ILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKAS 197 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 I +T +E A L+A L + + F G +QD S+ + Sbjct: 198 IRVTDPLKLEEAAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPTL 257 Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDII 294 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 258 NIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIETR 317 Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 ++D + K FD +LVDAPCS G IRR PD+ + +++ D Q ++L Sbjct: 318 KLDAREVHRHFEKDSFDKILVDAPCSGIGLIRRKPDIKYNKESQDFNALQAIQLEILSSV 377 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 ++ GGI+ +S C++ +++ +V++ L+S P N K + +G Sbjct: 378 CQTLRKGGIITYSTCTIFDEENRQVIEAFLQSHP--------NFEQVKLNHTQADIVKDG 429 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ ITP+ + DGFF +RR+ Sbjct: 430 YLIITPEQYQ--------TDGFFIGQVRRV 451 >gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313] gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313] Length = 451 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 115/464 (24%), Positives = 183/464 (39%), Gaps = 60/464 (12%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V+ LL V L+ + +S D+ LV + +R Sbjct: 17 PGLLPRRVAWELLQAV-AAGAYADVALERALRQNP---MSGADRGLVMELAYGAIRQRQW 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 +DA LD + ++ L+ LL + + QIL + + A V+ +VE AK K R A Sbjct: 73 LDAWLDRLGKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGKLAR-LA 131 Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR R + + R+A +P W E+L + G+ + A Sbjct: 132 PVVNGILRAALRARDAGMVLLEPEDSAARLAQAESLPLWLVEQLLVWRGEVGAELFARAS 191 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVML-------PTGGIRLKELPESIVSLPGFAEGV 222 +DL + E L A+ + G+ + + PG+ +G Sbjct: 192 NQVPTLDLRINRRRTSREKVRLALEAIGVESTPIESCPDGLMVTGSAGDLSQWPGYQQGH 251 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 W VQD S+ + L +LD CAAPGGK L + +V A+D S RL++L Sbjct: 252 WCVQDRSSQLVAPLLRPQPGDRILDACAAPGGKATHLVELMGGSGEVWAVDRSAGRLKRL 311 Query: 280 RCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 N RL + + DA + + F +LVDAPCS GT+ RH D W Sbjct: 312 ADNAARLGGDCLNALVADASNLLAVKPSWRGSFQRILVDAPCSGLGTLARHADARWRVTP 371 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + Q KLL + + GG +V++ C++ ++ + ++ L P Sbjct: 372 LQVEGLVILQSKLLEGLLPLLSSGGRLVYATCTIHPAENFDQIEAFLGRHPE-------- 423 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 LS ++ PD G DGF++ L Sbjct: 424 ------------LSLSQEQQLWPD-------PEHGGDGFYSAVL 448 >gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8] Length = 448 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 174/459 (37%), Gaps = 47/459 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+ + L V + + L R + R +V R +D Sbjct: 10 PARVHALDHLERVRKDDAFVDKL--------TIEDADARTRRQARELVAGVTRQRRWLDF 61 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL ++ LQ++LR+ + ++L+ +A VD VE AK+ LVN Sbjct: 62 VLGEAYHGDYDSMEHRLQEILRLGLYELLFQSTPTHAAVDEYVELAKQALRP-GAGNLVN 120 Query: 126 SILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR + R++ + A P W +R + +G + + A Sbjct: 121 GVLRTIDRDREHIPTPDTGDDANDLALRYSHPTWMVQRWLDRFGLDETTELLRANNRRPM 180 Query: 178 IDLTVKF------DIETWAHKLNAVMLPTGGIRLKELPESIVSL---PGFAEGVWWVQDA 228 + + D+ W + + V + + + + + +L +G VQD Sbjct: 181 YSVRINPLRTSEADVAAWLDEHDVVNVDSPYLDRYLRLKRLQALIAGDLLDDGHVAVQDE 240 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 SA + VQL +++D CAAPGGK + + A+D ++RLE++ + Sbjct: 241 SAGLVVQLLDPQPGETLIDGCAAPGGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEA 300 Query: 286 LHLY-AEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + D D VL+D PC+ G + + + W R +D+ + A Sbjct: 301 QGASEMVEAETADLRAWAGRPEPPQGDRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMA 360 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL V+PGG++V+S C+ + +++E V+ L + Sbjct: 361 ELQDELLDAAAQLVRPGGLLVYSTCTTEPEENERRVEAFLARHDEF------TVESAEGH 414 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +S G++ P MDG FA LRR Sbjct: 415 VPDEMVSDAGFLATFPH--------RHRMDGAFAARLRR 445 >gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA] gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA] Length = 451 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASQPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991] gi|158432588|gb|EDP10877.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991] Length = 415 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 102/451 (22%), Positives = 177/451 (39%), Gaps = 51/451 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR + LL + LL + + + +D+ LV IV TL+ + Sbjct: 1 MNARAYAFALLKEICIDEGYSNLLL-----RNKLQSVDPKDKALVTQIVYGTLQNYRLVR 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 + + + LL +SV Q+LY+D + YAV+D AV K++ + F+ L Sbjct: 56 YQWQSYVKKEPCK---EVALLLDMSVYQLLYMDKMPAYAVIDEAVRITKKNI-HPRFSAL 111 Query: 124 VNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN++LR+V R L+ A P W + YG + I + + Sbjct: 112 VNAVLRQVERNGKRELEGNAIEQLALETSHPTWLVAMWKAQYGWQECEKICHSDLEIRKQ 171 Query: 179 DLTVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + V + L + G L L I+ + +G+ +QD ++ + Q Sbjct: 172 CVRVNTMKASVEELLASGEFVKGNLAEHALYYLGNDIIHSNYYKQGLVSIQDEASQLVAQ 231 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 +LD+C+APG K + + D+ R+E ++ RL L + Sbjct: 232 YVDPQPQERILDVCSAPGTKACHIAERMGDKGSIVCGDIHAHRVELIKNGARRLQLQSIQ 291 Query: 293 IIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 MDA ++FD VL D PCS G + R D+ + + D+ Q+++L Sbjct: 292 AQVMDATSLKEIEGEMFDRVLCDVPCSGYGVLARKSDIKYHAKSTDMDTLIPLQQQILQS 351 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 V GI+V+S C+L+K+++E+ V L Sbjct: 352 ASKHVVKDGILVYSTCTLNKKENEKQVAAFLAQHEEFE---------------------- 389 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + I + DGF+ L+R+ Sbjct: 390 -CLQ-----QQTIFPYTHHSDGFYIAKLKRV 414 >gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846] Length = 451 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + + P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEVNNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGISSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q+ L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20] gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae RdAW] gi|1169716|sp|P44788|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20] gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae RdAW] Length = 451 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae NT127] gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus influenzae NT127] Length = 451 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 215/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGISSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+D+PCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1] gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1] Length = 450 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASQPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|293610442|ref|ZP_06692742.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826786|gb|EFF85151.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 434 Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ ++ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTESLCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + L I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACTLSGAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LN+ V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNDKIVVDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATQWTPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + K +P E+ ID + Sbjct: 358 DHMWQQLKVGGTLLYITCSILKAENEQQMMKFFAVNPNAKEIK---------IDADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ ++++ Sbjct: 409 QTYGRQLLPQAQSG--------DGFYYCKIQKIA 434 >gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII] gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII] Length = 451 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 122/457 (26%), Positives = 213/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF ++L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQSNVIALDVETHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+D+PCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFIDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|237785571|ref|YP_002906276.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium kroppenstedtii DSM 44385] gi|237758483|gb|ACR17733.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium kroppenstedtii DSM 44385] Length = 524 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 102/462 (22%), Positives = 174/462 (37%), Gaps = 40/462 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ L V + +L + LS RD + +LR +DAV Sbjct: 79 PRYVAWQALFRVDTENAFGNIILPSLMKEY---GLSGRDAAFTTELGYGSLRAQGLVDAV 135 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L ++ +LR+ Q+L + V ++A V+ +V+ + + + VN+ Sbjct: 136 IGECSSRPLEAIDPAVIAVLRLGTYQLLRMRVGNHAAVNTSVDLCQEVDKPK-AKGFVNA 194 Query: 127 ILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKERVLAISDACIS- 174 +L V++ A + PEW + + G + +SDA I+ Sbjct: 195 VLHSVAQRTESEWIDHLTKNADPFERMALATAHPEWIVKVFRDSLGDYAISELSDALIAD 254 Query: 175 --PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + L + E A + ++P EG+ VQD Sbjct: 255 DARPRVHLVARPGEITAEELALVTGGEQTSYSPYGVVLEEGDPGAIPAVREGMAAVQDEG 314 Query: 230 ASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNL 283 + + + LDLCA PGGKTA + A D + + R Sbjct: 315 SQLIARAAAEAPLEGDETGQWLDLCAGPGGKTALMACLARIDGAHVDAVEPVPHRARLVE 374 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +D + +D LVDAPC+ G +RR P+ W + DD+ + Sbjct: 375 KTTTGLPVTVHTVDGRQSGLEAHYDRTLVDAPCTGLGALRRRPEARWRKSPDDVPELVTL 434 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+LL G +PGGIVV+S CS +++ ++V ++ P L PL++ + M Sbjct: 435 QRELLAAGAELTRPGGIVVYSTCSPHLEETVKIVDWAEKNCP----LQPLDTVDY-MCGM 489 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + E +++ P G D F RR P+ Sbjct: 490 QHCRAGENAVQMWPH--------RHGTDAMFVQIFRRSATPE 523 >gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase, s-adenosyl-l-methionine-dependent [Haemophilus influenzae F3031] gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent [Haemophilus influenzae F3031] Length = 451 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 121/457 (26%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWSEIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPYFEEGAVTVQDLSAQWAT 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVETHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q+ L + EL+ L + Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENYEQIQEFLNAH-ADAELLSLPFS--------- 421 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + P + DGF+ L + Sbjct: 422 DDTSAVGFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|219871972|ref|YP_002476347.1| ribosomal RNA small subunit methyltransferase B [Haemophilus parasuis SH0165] gi|219692176|gb|ACL33399.1| ribosomal RNA small subunit methyltransferase B [Haemophilus parasuis SH0165] Length = 432 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 126/458 (27%), Positives = 210/458 (45%), Gaps = 42/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R V++ ++ V+ + SL+ L+ A L +D V+ R L Sbjct: 1 MKKH-STRAVTAQIILQVLDQGKSLSTLIPE-----AQSQLDSKDLAWVQETTFGICRVL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++A++ ++ L K + LL V + Q+LY+ V +A VD V A + + F Sbjct: 55 PRLEAIIKLLVEIPLKNKTRLVHCLLLVGLYQLLYMRVPPHAAVDEVVN-ATKVLKLDSF 113 Query: 121 AKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L N +LRR RE+ + ++ PEW +L+ Y R + ++ P++I Sbjct: 114 RALTNGVLRRFLREQEAILAKVDKHWQTLHPEWLVNKLKQAYPNWREIVDANNQKPPMWI 173 Query: 179 DLTVK-FDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + + L A L + S+ LP F +G VQDA Sbjct: 174 RVNAQRTNRADYVALLGDLAKNHKEATACVPDCAVLLDKAVSVSQLPHFKQGWVAVQDAH 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A +L N +LD CAAPGGKT ++ + V ALD+ + RL +++ NL RL+ Sbjct: 234 AQWSAELLDAQNGELILDACAAPGGKTTHILEKAPQAKVIALDIEEARLVRVKENLARLN 293 Query: 288 LYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 A I ++FD +L+DAPCS+TG IRRHPD+ W R +DI A Q Sbjct: 294 QTATVICGDASQPEQWLTSGEMFDKILLDAPCSATGVIRRHPDIKWLRKEEDIAGLAELQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K+L + +KP G+++++ CS+ +++ + +Q L +P +LV +N Sbjct: 354 GKILKALWARLKPNGVLLYATCSVLPEENSQQIQHFLAQTP-EAKLVEIN---------- 402 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + E + +++ G DGFF L + Sbjct: 403 --VGGEQCL------MKQFFPKQDGGDGFFYAKLVKQA 432 >gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus influenzae 10810] Length = 451 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 123/457 (26%), Positives = 216/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVVALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+D+PCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q+ L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQEFLNAH-ADAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|257438997|ref|ZP_05614752.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium prausnitzii A2-165] gi|257198582|gb|EEU96866.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium prausnitzii A2-165] Length = 440 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 102/440 (23%), Positives = 175/440 (39%), Gaps = 37/440 (8%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 + +LD E + L RD+ AI L +D +L+ L L R Sbjct: 17 EQDGFSNLVLDAELRR---QKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKGLARLD 73 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 ++++LR ++AQ Y+ V A V+ AV+ + K+ + LVN++LR+ +E Sbjct: 74 PQVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKK-ASASGLVNAVLRKACNYDLETA 132 Query: 140 QRIAGISII-----PEWFKERLENFYGKERVLAISDACISPLYIDL---TVKFDIETWAH 191 + + + E L I L +K D Sbjct: 133 RFRNETQRLMVLGSAGQDVAEFLRTHYPEEALGILTHTADGGCTSLRANCLKMDAAALCE 192 Query: 192 KLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 KL + + L S P F EG + V+ ++ + +V Sbjct: 193 KLLESGVKSAQPGLVPGSVLAKFEGSPAEHPLFKEGCFHVEGQASQLAALCVEAKPGDTV 252 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 +DLCAAPGGKT A+ + + + DV++ R+ +R ++R+ + DA Sbjct: 253 IDLCAAPGGKTLLLAEEMQGQGALYSCDVAEHRVGLIRSAVERMGFAHVTALCNDATRPN 312 Query: 303 PKKL-FDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGI 360 PK D +LVDAPCS G + + PD+ + + + Q +L + +K GG Sbjct: 313 PKLPAADRILVDAPCSGLGILAKKPDIRYKTLEKARHDELLATQSSILDTAAALLKAGGR 372 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C++D ++EE V L P + P + M + G + + Sbjct: 373 LVYSTCTIDPAENEEQVAAFLARHPEFRVVRPAVA-----FPDGMTVGEHGALSV----- 422 Query: 421 EKIDGVSSGMDGFFAVALRR 440 +GMDGFF A+++ Sbjct: 423 ----PTRTGMDGFFLCAMQK 438 >gi|172040659|ref|YP_001800373.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium urealyticum DSM 7109] gi|171851963|emb|CAQ04939.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium urealyticum DSM 7109] Length = 513 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 100/471 (21%), Positives = 162/471 (34%), Gaps = 47/471 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G AR + +L V + L + R +S RD + TLR Sbjct: 56 TGDKARDAAFAVLRQVTEEDAYGNLALPAVLRE---RGISGRDANFATELTYGTLRATGL 112 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA++ + + LR+ Q+L V +A VD +VE K + + + Sbjct: 113 LDAIIAKAAGRPVAKIDSVALDALRIGAYQLLRTRVEPHAAVDTSVELVKANGGGK-ASG 171 Query: 123 LVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLEN------FYGKERVL 166 VN +LR +SR E +A PEW + Sbjct: 172 FVNGVLRTISRSTPEQWLDRVAPGSDLANMALRYAHPEWIAAAFNQSLGGSSEKPAADLA 231 Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 +A + + L + E A + + L +G+ Sbjct: 232 EALEADDARPTVHLAARPGQISAEELALITGGEQGRWSDYAVYLDSGAPGELEAITQGLA 291 Query: 224 WVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLE 277 VQD + + LDLCA PGGKTA + A D ++ Sbjct: 292 SVQDEGSQLISLALVQAPLGREDRGRWLDLCAGPGGKTAFIGSWAQAEQATVDATEISAH 351 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + + D + P++ FD VLVDAPC+ G +RR P+ W Sbjct: 352 RAELVAKSTKELPVRVRTGDGRNLAGVRDLELPEEGFDRVLVDAPCTGLGALRRRPEARW 411 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + D+ + QR+LL PGG+V++S CS ++ ++V R E Sbjct: 412 RKQETDVTELVPLQRELLRSAWEATAPGGVVIYSTCSPHPLETTQLVDSFCR--DTGAEP 469 Query: 391 VPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L + A A G +I++ P G D F +R+ Sbjct: 470 IDLGAEVPALAAAAAAGGAVGPYIQLWPH--------RHGTDAMFIAGIRK 512 >gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP] gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP] Length = 450 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 212/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ + + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQALDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL RL+ A Sbjct: 252 MLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311 Query: 293 II-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + E A FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+PL + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLPLPVSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius UCC118] gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius UCC118] gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus salivarius ACS-116-V-Col5a] Length = 445 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 198/465 (42%), Gaps = 44/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ RL++ LL+ V + L+ ++ F S +D L+ IV ++ Sbjct: 1 MKNKT-VRLLAVELLTRVESQGTYSNLALNKVIEENNF---SVKDTKLLTTIVYGVIQHK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L+ + + + + +++LL VS+ Q++YLD + D AV + ++E AK K + Sbjct: 57 LTLEYWLEPFIKKA-NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAK-IKGHTG 114 Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K V +L R E + R++ + PEW E L G +V +I D Sbjct: 115 IRKFVTGVLHSIRRNGLREVNEIDNDITRLSIGTSTPEWLVEELIKELGITKVESILDTI 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224 + + + +N + IR L + F G Sbjct: 175 NTSPKHSVRINTHKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMI 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLR 280 +QD SA + V+ + VLD CAAPGGKT Q+ + KV ALD+ K +++ + Sbjct: 235 IQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIE 294 Query: 281 CNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N ++L L A+ + A + FD +LVDAPCS G +RR P+V + + D Sbjct: 295 ENANKLGLISKVSAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLAD 354 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q +L + +K GG + +S C++ ++++V+ L+ P V+ Sbjct: 355 SYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKN 414 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K ++L+ I PD DGFF LR+ Sbjct: 415 KLKDERDTLSLT------IYPDDYMS--------DGFFIATLRKK 445 >gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 432 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 133/457 (29%), Positives = 206/457 (45%), Gaps = 43/457 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK NAR V++ ++ V+ + SL L+ A L +D LV+ I R L Sbjct: 1 MKK-QNARAVAAQIILQVLDQGKSLATLIPE-----AQAKLEAKDLPLVQEITFGVCRTL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR++AV+ + L K + LL V + Q+LY+ V ++A VD V A+ K + +F Sbjct: 55 PRLEAVIAQAVEKPLKGKTRLVHCLLLVGLYQLLYMRVPEFAAVDEVVNAARSLKLD-NF 113 Query: 121 AKLVNSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 L+N +LRR REK ++ PEWF +L+ Y R + ++ P++I Sbjct: 114 KALINGVLRRFLREKDSLLAKFDKNWQTLHPEWFVNKLKKAYPNWREIIDANNQRPPMWI 173 Query: 179 DLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 ++ + N L P + L F +G VQDA Sbjct: 174 RSNIQRIKPQDYRVLLGDLVAKNSENMTACVPESAILLANPVPVNKLMNFEQGWATVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRL 286 A L N +LD CAAPGGKT ++ + + V ALD+ + RL+++R NL RL Sbjct: 234 HAQWSAALLEAQNGELILDACAAPGGKTTHILEAAPQAKVIALDIEESRLKRVRENLARL 293 Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 A I A +FD +L+DAPCS+TG IRRHPD+ W R +DI + Sbjct: 294 GQTATVICGDASKPAEWLDDGVMFDRILLDAPCSATGVIRRHPDIKWLRKENDIAELVAL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q K+L +KP G++V++ CS+ +++ E + + + S + A W +D Sbjct: 354 QEKILEALWGRLKPRGVLVYATCSVLPEENGEQITRFVASH---------SDAEWVEMDF 404 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P G DGFF L + Sbjct: 405 NGEKTA--MKQFFPQ--------EQGGDGFFYAKLIK 431 >gi|261856665|ref|YP_003263948.1| sun protein [Halothiobacillus neapolitanus c2] gi|261837134|gb|ACX96901.1| sun protein [Halothiobacillus neapolitanus c2] Length = 437 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 117/453 (25%), Positives = 198/453 (43%), Gaps = 33/453 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 ++ +++ LL V+ + +SL L + + LV+A+ LR Sbjct: 2 PRLSPEALTAQLLLSVVGQGVSLDAALGRVLSQAQPVH-----RGLVQAMGYEVLRHYEA 56 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + D +L +P K + LL V + +I V+ AV QA R+ + Sbjct: 57 LVFWRDSLLERPIPAKSAIIALLLLVGLERIRGARREASRSVNSAV-QAARELGHPWATG 115 Query: 123 LVNSILRRVSREKIELLQRIAGIS-----IIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N++LRR R+ E + A +P+W + L +G+ R A+ A + Sbjct: 116 LLNAVLRRAVRQIEEGVDPFAQAPSAAGARLPQWLFDALTVDWGEARASALGSALATHPP 175 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 + L V D + +L+++ + P + LPGFAEG VQD +A Sbjct: 176 MTLRVAGDRAAYGEQLSSIEIEANPTAFSTRGLNLVHPMDVDRLPGFAEGQVSVQDEAAQ 235 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLY 289 V L VLD C+APGGKT ++ + TA+D+ R+ +++ NL+R ++ Sbjct: 236 WVVDLLDLAPGQHVLDACSAPGGKTLAMLQHQPESNVTAVDIDTTRMARVQENLERGQVF 295 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A D+ + FD +L D PCS+TG IRRHPD+ R +D+ Q + Sbjct: 296 ARLIVGDAGAPQDWWDGQPFDRILADVPCSATGVIRRHPDIKRLRRPEDLPVLVERQAVI 355 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L S +KPGG +V++ CS+ +++ V LR +PL+ + + + Sbjct: 356 LDALWSLLKPGGRMVYATCSILDRENSAQVAAFLRRH-GDARALPLSVDWGEPRQIDGQF 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ VS G DGFF L + Sbjct: 415 -----------LGQQVFPVSEGHDGFFYAVLEK 436 >gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus Nitrospira defluvii] gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus Nitrospira defluvii] Length = 449 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 108/461 (23%), Positives = 186/461 (40%), Gaps = 46/461 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L + + L D A L RD+ + +V LR+ +D L + Sbjct: 1 MRALLAIDTAGMLGDDLFDQVSSREA---LDLRDRAFMVELVRGVLRYRATLDWRLGLLS 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD--KENRHFAKLVNSIL 128 + + +Q +LR+ Q+LYLD V D A V+ +V+ K+ + R ++ VN++L Sbjct: 58 DRRITKLPTLVQTILRLGAYQLLYLDRVPDSAAVNESVQMTKQQSRRLGRDWSGFVNAVL 117 Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 R + R A P W ER G ER + A + + L Sbjct: 118 RALLRSPEPAWPDAGSDPVVALAVRYSCPAWLVERWCRRLGAERAEVLCRASVEAPPLTL 177 Query: 181 TVKFDIETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 V + + L + +++ LPG+AEG ++V+D + Sbjct: 178 RVNTLRTSRSALLADLAAAQVEANPTSVSEVGLQLSRSCAVIDLPGYAEGRFYVEDEAGQ 237 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + L LD CAAPGGK L + + ++ A+D RL+ + N RL + Sbjct: 238 LIPLLLDVQPGQRALDACAAPGGKATHLAALMENQGEIVAVDRVSSRLDLVMANCRRLGV 297 Query: 289 YAEDIIEMDAF---------DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + D + FD +L+DAPCS G +RRHP+ W + + I + Sbjct: 298 KILTPLAGDLRALVGAEIASHPMLSRPFDRILLDAPCSGLGVLRRHPEGKWYKTPESIAQ 357 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +LL ++PGG++V+S CS++ +++E ++ + ++ + A W Sbjct: 358 HRRMQVELLAVTSRLLRPGGVLVYSACSIEPEETESIIDEFCQAHHQFQRE---SIAPWL 414 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++P G + + MD FFA +RR Sbjct: 415 PPAGLPFVTPRGDLSTMANSKR--------MDLFFAARVRR 447 >gi|330970341|gb|EGH70407.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aceris str. M302273PT] Length = 441 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 124/456 (27%), Positives = 198/456 (43%), Gaps = 37/456 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVDALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR R+ LL + + P W ++ L+ + E+ AI A + + L Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + + L+ L + P + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHRRDQYLELLDTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 234 LAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLDGVVAVDLEAKRLVRVRENLDRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 DAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 354 LLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L ++ Sbjct: 414 ------------HGRQLLAQQGGHDGFYYAKLIKIA 437 >gi|304389466|ref|ZP_07371429.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327276|gb|EFL94511.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 523 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 106/475 (22%), Positives = 180/475 (37%), Gaps = 47/475 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ L V + +L + L +RD +V TLR R DA Sbjct: 45 PARDVAFQALRRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDA 101 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + + L +LR+ + QIL + V DYA VD V+ A RD+ + A +VN Sbjct: 102 IIGLLSDRDIAALDPELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVN 160 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169 ++LR+V+ + + PEW L + + + Sbjct: 161 AVLRKVTEHDLSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGELPGLL 220 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220 A P Y+ L + + + A + L Sbjct: 221 HAQNRPAYVTLCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVER 280 Query: 221 GVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 G+ V+D + + ++ + +DLCA PGGKTA V A +VS Sbjct: 281 GLAGVEDEGSQLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVS 340 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R E +R + +++ D D+ D VLVDAPCS G++RR P+ W Sbjct: 341 PHRAELVRDSTKAFTDQIVQVLQGDGRDFGGLHPGKADRVLVDAPCSGLGSLRRRPEARW 400 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + D+ Q+ LL + VKPGG+V ++ CS ++ +VV+ +++ L Sbjct: 401 NKSATDLKDLTALQQDLLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLQVL 460 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 A ++ L ++++ PD G D F +++ + Sbjct: 461 DAPAVAREIIVNSEHDLGLGPYLQLWPD--------RDGTDAMFLALIQKKSPTE 507 >gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228] Length = 449 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 109/464 (23%), Positives = 206/464 (44%), Gaps = 41/464 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R L V K +L + +RD+ L I +R Sbjct: 1 MK---NLRSEILKALLRVE-KGSYS----NLLLNSKLKLIEDKRDKNLFTEIYYGVIRNK 52 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN-- 117 +D +++ +SL + + LR+ V Q+ +LD V A + +VE K Sbjct: 53 LYLDYIINQFSKTSLLKMDSEVLMGLRIGVYQLFFLDKVPARAAIYESVEAVKIILPASQ 112 Query: 118 RHFAKLVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + N +LR ++R++ + + ++ P W +R YG + I Sbjct: 113 KGAISFTNGVLRNINRKRNSIKLPAKNKDPEKHLSIKYSYPMWLVKRFIKQYGFNKSEKI 172 Query: 169 SDACISPLYI---DLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAE 220 A + ++K + L+A L L+ + + F Sbjct: 173 LKAGNKRAEVIYRHNSLKMTKAQFIELLDAADLEYESTFLESFYKLKKVNNPAQTKVFKR 232 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G ++Q SA + L N+ VLDL AAPGGKT+ L + + ++ ALD+S+ RL+ Sbjct: 233 GGAYIQGTSAGLASLLLDPSENMEVLDLAAAPGGKTSHLAALMNNTGQIKALDISQSRLD 292 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 ++ NL RL + + + DA Y K +D +L D PCS G I P++ W ++ + I Sbjct: 293 LVQENLLRLGVKNVSLKKADASKYQDNKKYDRILADLPCSGLGLIASKPEIKWDKNENII 352 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 K A Q K+L ++ +K GG +++S C+L K++++++++++L+ + +L+ L+S Sbjct: 353 EKMAKLQYKILNNNLNKLKSGGQLLYSTCTLAKEENQDLIKRILKENK-AYKLIDLSSRL 411 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K+ + + + + ++ I P ++ GFF ++++ Sbjct: 412 EKASSLNLE-TKDKYLEILPGEVDSE--------GFFYALIQKV 446 >gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae ACS-120-V-Col10a] gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae ACS-120-V-Col10a] Length = 470 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 117/462 (25%), Positives = 196/462 (42%), Gaps = 44/462 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L+ V + + ++ + + D+ L +V +L+F + + Sbjct: 23 ARYQAMETLNLVYKGEAFVNQEVNQVLS---YSRVEDSDRDLYTRLVYGSLQFHWTLQEL 79 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L VL R K L LL +S Q YLD V D+A+VD AV AK+ + N+ + N Sbjct: 80 LKQVL-KLYKRTKKWLLALLELSAYQHYYLDAVPDHAIVDEAVRIAKK-RGNQTMGRFTN 137 Query: 126 SILRRVSREKIELLQRIAGIS-----------IIPEWFKERLENFYGKERVLAISDACIS 174 LR + R + I+ + +P + + +G E I+ A + Sbjct: 138 GTLRNLFRTYPTIEDFISQQAGDQAYVLSLETSLPLDWVKYFTQRFGFETTQQIAQAMVE 197 Query: 175 PLYIDLTV----KFDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWV 225 P +++ + D + + L P +LK + F +GV + Sbjct: 198 PAQVNVRISRDYWQDQDKISQSLADQGFPNQSSQIAPHQLKVKTGNPAQSELFEKGVITI 257 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282 QD +AS+ V + VLD CAAPGGKT Q + +V A D+++ +L + N Sbjct: 258 QDEAASLAVDILNPKAGDRVLDACAAPGGKTVQLAEYVGKTGQVLAFDIAENKLPLIADN 317 Query: 283 LDRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + R+H+ + I + DA K FD +LVDAPCS G RR PD +D D+ Sbjct: 318 VKRMHVDSQVSIQQGDASQLGEKFPAESFDGILVDAPCSGVGLFRRKPDTKLNKDFQDLK 377 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q ++L +K G +V+S C++ +++ +VV+K L + P L + + Sbjct: 378 NLQKIQLEILNNVSPLLKKAGRLVYSTCTITAEENWQVVEKFLATHP-DFALKAIGPEWQ 436 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + I +L + + I P DGFF L + Sbjct: 437 EVI--QPSLINDACLEILPHHF--------NSDGFFVALLEK 468 >gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus salivarius CECT 5713] Length = 445 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 197/465 (42%), Gaps = 44/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ RL++ LL+ V + L+ ++ F S +D L+ IV ++ Sbjct: 1 MKNKT-VRLLAVELLTRVESQGTYSNLALNKVIEENNF---SVKDTKLLTTIVYGVIQHK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L+ + + + + +++LL VS+ Q++YLD + D AV + ++E AK K + Sbjct: 57 LTLEYWLEPFIKKA-NKLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAK-IKGHTG 114 Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K V +L R E + ++ + PEW E L G +V +I D Sbjct: 115 IRKFVTGVLHSIRRNGLREVNEIDNDITSLSIGTSTPEWLVEELIKELGITKVESILDTI 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224 + + + +N + IR L + F G Sbjct: 175 NTSPKHSVRINTHKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMI 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLR 280 +QD SA + V+ + VLD CAAPGGKT Q+ + KV ALD+ K +++ + Sbjct: 235 IQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIE 294 Query: 281 CNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N ++L L A+ + A + FD +LVDAPCS G +RR P+V + + D Sbjct: 295 ENANKLGLISKVSAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLAD 354 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q +L + +K GG + +S C++ ++++V+ L+ P V+ Sbjct: 355 SYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKN 414 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K ++L+ I PD DGFF LR+ Sbjct: 415 KLKDERDTLSLT------IYPDDYMS--------DGFFIATLRKK 445 >gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus H10] Length = 448 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 118/460 (25%), Positives = 200/460 (43%), Gaps = 44/460 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +AR +S L V++ L+ S LS DQ L IV T+++ Sbjct: 8 STNKSARAISLETLIKVLQNGSYSNISLNNSLKHS---DLSIADQNLATRIVYGTIQYRL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 + L +L + + K L+ LL +S+ QI++LD V + AV+D A + AK+ ++ Sbjct: 65 FFEYQLTGLLKTKITEK--YLKPLLLMSLYQIIFLDKVPNRAVLDEANKLAKQFGKHHSS 122 Query: 121 AKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 V + + R ++ + ++ ++ +PEW + L + +G ++ ++ + Sbjct: 123 GYRVVNGILRAFIRRGVILPDEKDTIKYLSIKESVPEWLVKYLIDNWGMQKAQSVLSSIN 182 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQ 226 P + ++ D +L L I F +G +Q Sbjct: 183 DPAKNSVRISSLADRNKVFDQLKKEGYQPEWSNLSLNDAVLSHGGISESDLFEQGKLTIQ 242 Query: 227 DASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNL 283 D +AS + F VLD C+APGGKT Q+ VTALD+ +++L ++ N Sbjct: 243 DEAASLVVEAFDFDQNQTEHVLDACSAPGGKTVQIAENIHGDVTALDIHEKKLRLVKENA 302 Query: 284 DRLH-LYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 R+H L DA F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 303 RRMHVLDKVTTKACDARKAHEIFKAGEFTKILVDAPCSGLGLLRRKPEIRYTKSLQDLRN 362 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L +K G +V+S CS+ +++EEVV+++LR P EL P + + + Sbjct: 363 LQKIQLTILDSISKLLKAEGELVYSTCSISMEENEEVVKQLLRIHPG-FELKPFSLSKLE 421 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S G ++I PD G DGFF R Sbjct: 422 --------SKTGMLKIMPD--------QDGNDGFFIAKFR 445 >gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 445 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 198/465 (42%), Gaps = 44/465 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ RL++ LL+ V + L+ ++ LS +D L+ IV ++ Sbjct: 1 MKNKT-VRLLAVELLTRVESQGTYSNLALNKVIEEN---NLSVKDTKLLTTIVYGVIQHK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L+ + + R + +++LL VS+ Q++YLD + D AV + ++E AK K + Sbjct: 57 LTLEYWLEPFIKKA-NRLQLWVKELLLVSLYQMVYLDKIPDRAVFNESIEIAK-IKGHTG 114 Query: 120 FAKLVNSILR-------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K V +L R E + R++ + P+W E L G +V +I D Sbjct: 115 IRKFVTGVLHSIRRNGLREVNEIDNDITRLSIGTSTPKWLVEELIKELGITKVESILDTI 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWW 224 + + + +N + IR L + F G Sbjct: 175 NTSPKHSVRINTYKVNKQILVNELKNDGYTIRESEVTPDALIVDGGFLPKSSEFRNGKMI 234 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRRLEKLR 280 +QD SA + V+ + VLD CAAPGGKT Q+ + KV ALD+ K +++ + Sbjct: 235 IQDESAMLAVESMDIQKDDIVLDACAAPGGKTTQIAEKLMKGEGKVWALDIHKHKVKLIE 294 Query: 281 CNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N ++L L A+ + A + FD +LVDAPCS G +RR P+V + + D Sbjct: 295 ENANKLGLISKISAKQLDARKAITEFDSEKFDKILVDAPCSGLGLMRRKPEVKYEKKLAD 354 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q +L + +K GG + +S C++ ++++V+ L+ P V+ Sbjct: 355 SYSLHDIQVNILEKVAPLLKKGGYLTYSTCTILNIENQKVIDDFLKKHPEFVQEKTYTKN 414 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K ++L+ I PD DGFF LR+ Sbjct: 415 KLKDERDTLSLT------IYPDDYMS--------DGFFIATLRKK 445 >gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium hominis ATCC 15826] gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium hominis ATCC 15826] Length = 418 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 120/444 (27%), Positives = 199/444 (44%), Gaps = 37/444 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR + H + V+ + +L LL +S DQ L +A+V TLR + Sbjct: 1 MKARQAALHTIDGVINQHRTLNTLLAQ-----DKSRVSAADQALYQALVYGTLRQYRALS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ ++ + L +L + + Q+L +++ D+ V++ V A + R L+ Sbjct: 56 ALCAQMMEKPPATPGHPLAIILNLGLYQLLQMNLGDHGVINETVNLAPHHRLAR-AKGLI 114 Query: 125 NSILRRVSREKIELLQ--RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 N+ILRRV RE+ Q A + +P+W + + E +A S++ PL + L Sbjct: 115 NAILRRVQRERAHWQQALENAATANLPDWLRGQYPAE---EAAIAASNSRQPPLTLRLNH 171 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKE--LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 D W + ++ +PGF +G VQDA+A L Sbjct: 172 THDRAAWLAAHGDARANPLHPQAITLTHGHNVQHIPGFNDGAVSVQDAAAQHAATLLAPQ 231 Query: 241 NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEM 296 N +LD CAAPGGKT + A++ ALD + RL +++ NLDRL L A Sbjct: 232 NGEHILDACAAPGGKTGHLLELAPTAELLALDHDRDRLVRVQENLDRLGLRATLKAADAA 291 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D + K FDA+L+DAPCS +G +RRHPD+ W R D+ + A QR+LL + +K Sbjct: 292 DTAAWWDGKPFDAILLDAPCSGSGVLRRHPDIAWLRTPADLKRLAASQRQLLERLWPTLK 351 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG ++++ C++ ++++ ++ L + P A + G + + Sbjct: 352 PGGRLLYTTCTILPAENQDNIRAFLAAHPDARLQTLALPAD----------TGYGSLHL- 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 DGF+ L + Sbjct: 401 ---------PDDDGDGFYYAMLHK 415 >gi|94266702|ref|ZP_01290375.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] gi|93452643|gb|EAT03206.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium MLMS-1] Length = 484 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 123/497 (24%), Positives = 187/497 (37%), Gaps = 73/497 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R V+ LL + + LL+ + RD+ L+ A+V LR+ Sbjct: 1 MTPTDNIRRVTLQLLLVQEQSGQPVEQLLEHRLREHPLA--DGRDRRLLEALVYGVLRWR 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +D V+ L + K LR+ + Q+L L + A ++ ++ + ++ R Sbjct: 59 GLLDQVVAGYARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQPRW 118 Query: 120 FAKLVNSILRR--------------------------VSREKIELLQRIAGISIIPEWFK 153 VN++LR+ L +A P W + Sbjct: 119 LTGFVNAVLRKAAADIERLGRQQYLAGLVAEVTASTGQYASSAPLPMAVAAWLSHPPWLR 178 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGI 203 +R E YG E + + L V T + L A + Sbjct: 179 QRWEQRYGLELCRELCHINNCLPPLVLRVNLHRLTASELLAQLQKAGIAATAGDYAPAAV 238 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--- 260 L + LPG+ +G + VQD +A + L LD CA GGKTA L Sbjct: 239 VLPPGSGRVEDLPGYGQGWFAVQDEAAQLVTMLLAGAGPGHYLDACAGLGGKTAHLAELL 298 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA----------- 309 A +TAL+ RR L NL RL + A I A D Sbjct: 299 PPEATITALEPQSRRALLLTANLHRLGVTARLIQGELAAHLPAADKKDKNGDTIPIFSPF 358 Query: 310 -------VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 +LVDAPCS G IRRHPD+ W R ++ Q +LL ++PGG++V Sbjct: 359 SPFLYQGILVDAPCSGLGVIRRHPDIRWNRRAAELKNYQRRQLELLSTAAELLQPGGVLV 418 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS + +++EEV+Q +L+ P + L++ A L + R P Sbjct: 419 YVVCSFEPEENEEVIQLLLKRRPE----LRLSAPAPYLPVAARQLVRGDFFRSLP----- 469 Query: 423 IDGVSSGMDGFFAVALR 439 S G+DGFFA L Sbjct: 470 ----SDGLDGFFAARLV 482 >gi|329767015|ref|ZP_08258543.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans M341] gi|328837740|gb|EGF87365.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans M341] Length = 441 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 96/458 (20%), Positives = 195/458 (42%), Gaps = 41/458 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +NAR ++ +L ++++ L+ + + ++D+ + +V T++ Sbjct: 2 NSINARQIAYEVLYTIIQEDGYSNITLNKYFNQYKIQ---EQDKRFISEVVYGTIKNKIY 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ +L R K ++ +L +S+ Q+LY+D ++A++D AV+ +K+ N Sbjct: 59 LEHILKSYSKG---RVKPKVKVILSMSIYQLLYMDKTPNFAIIDEAVKLSKKVAGN-ITG 114 Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 K VN ILR + R ++ + P L+ YG E+ I + Sbjct: 115 KFVNGILRNIERHASNLDLKYRNNTEQFCIENSCPNELYNILKEQYGVEKAQKIVVSFNE 174 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASA 230 + + KL + + + + F +G + +QD ++ Sbjct: 175 KSKNSIRYNPLKITKKELIEKLGDAVSESEICEDSLVLNKLNLDSSLFTKGYYIIQDEAS 234 Query: 231 --SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286 N +LD CAAPGGK+ + + + + D +L+ + N ++L Sbjct: 235 ALVATSIGLPLDNKYKILDTCAAPGGKSLHIASKYFNSSLISCDKYIHKLKLIEDNKEKL 294 Query: 287 HLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + E DA + FD V+ D PCS G I+ P++ + + A Q Sbjct: 295 GITNIQVKEQDATLTNDSFTDKFDIVVCDVPCSGIGVIKNKPEIKYKITNAYVEDIAKLQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-ELVPLNSAYWKSIDM 403 ++L +VK GG +++S C++DK+++ + ++K L+ + + E + LN++ K+ D Sbjct: 355 YEILENSKHYVKQGGTLLYSTCTIDKRENIQNIEKFLKENRDFILEKITLNNSIVKTRD- 413 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + I PD DGFF L+++ Sbjct: 414 ------NGVLEILPDEYS--------CDGFFIAKLKKM 437 >gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032] gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032] Length = 450 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 120/456 (26%), Positives = 187/456 (41%), Gaps = 41/456 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +L S+ L L D+ LV+ ++ LR +D + Sbjct: 8 PRAVAVEVLCLWATTHNSIDPLFQTAIE-----QLPDIDRGLVKTLIYGVLRQKEYLDHI 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + K LR+ V Q+L+L + + A V+ V K + VN Sbjct: 63 LRTFAKHPLRKMKPRTLMTLRIGVYQLLFLSRIPESAAVNATVNTLKAASQPAWLIGFVN 122 Query: 126 SILRRVSREKIELLQRIAGIS------IIPEWFKERLENFYGKERVLAISDACISPLYID 179 ILR V+R++ +L P W +R +G+ AI + Sbjct: 123 GILRAVARQRTQLPTPEQMTQAEPPILNHPIWLVDRWRAEFGEATARAICACNNIEPPLT 182 Query: 180 LTV---KFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDAS 229 L V + L + + P ++ +LPG+ +G + VQD + Sbjct: 183 LRVNRRQTSRPLLKALLEKSGIMARNGFFSPVALIIDTFPGAVAALPGYQQGHFQVQDEA 242 Query: 230 ASIPVQLFGTLN-NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 A + L G L +LD CA GGKT+ L + A++ RR LR NL R Sbjct: 243 AQLASLLTGPLPARCRILDGCAGLGGKTSHLAEMLPSDGAIVAVEPDSRRYRLLRDNLRR 302 Query: 286 LHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L A+ + + A+ + FDA+L+DAPCS TG IRR PD+ W R +D+ Sbjct: 303 LGHNAQALPVRADLRAYAATRPQPFDAILIDAPCSGTGVIRRQPDIRWNRQPEDLTPYQQ 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q LL + +KPGG++V++ CSL+ +++ E V+ + P ++ Sbjct: 363 TQVHLLEIAATLLKPGGVLVYATCSLEPEENRETVRLFIERCPCFA------------LE 410 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 A A PE R+ + GMDGFFA L Sbjct: 411 HAAAFLPENARRLVNAAGFFQPNPADGMDGFFAARL 446 >gi|119716670|ref|YP_923635.1| Fmu (Sun) domain-containing protein [Nocardioides sp. JS614] gi|119537331|gb|ABL81948.1| Fmu (Sun) domain protein [Nocardioides sp. JS614] Length = 472 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 104/458 (22%), Positives = 172/458 (37%), Gaps = 37/458 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + ++ V +L LS RD V +V+ T+R DA Sbjct: 31 PARLAALDVMKAVRVDGAYTNLVLPSVLR---QHGLSGRDAAFVTELVSGTIRRRGTYDA 87 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L + + + LR+ Q+L + V +A + V+ + + N Sbjct: 88 ILAACVDRPLSKVEAKVLDALRLGTHQLLSMRVPVHAAISTTVDLVRAKV-SSGAGGFAN 146 Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++LR+V+R+++ + + P W + L + G + + + A Sbjct: 147 AVLRQVARQELTEWIARVAPDPRVAPTRFASIAYSHPRWIVDELRSAVGADELFELLAAD 206 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 P + L + +L P + +P AEG VQD + + Sbjct: 207 NEPPRVTLVARPGRSG-REELPGEPTPYSPYGVVLGGGDPGEIPAVAEGRAGVQDEGSQL 265 Query: 233 PVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + LDLCA PGGK+ A GA++ A + + R + L Sbjct: 266 VAAALAAAPIEGPDRRWLDLCAGPGGKSALLAALAAQRGARLVAAERQEHRTRLVLRALR 325 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 A + + FD VLVDAPC+ G +RR P+ W R DD++ Q Sbjct: 326 DAPGVAGIVTSDGTAPPFAEGTFDRVLVDAPCTGLGALRRRPEARWRRRADDLLSLVLLQ 385 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL + V+PGG+VV++ CS ++ VV VL S P ++ Sbjct: 386 RRLLSSALDLVRPGGVVVYATCSPVISETRGVVSSVLESRDDA---EPGDTRSLLPAIPG 442 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G +++ P G D F LRR Sbjct: 443 CEGPMPGTVQLWPH--------RHGTDAMFLALLRRTA 472 >gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303] gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303] Length = 450 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 115/464 (24%), Positives = 181/464 (39%), Gaps = 60/464 (12%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ R V+ LL V L+ + +S D+ LV + +R Sbjct: 16 PGLLPRRVAWELLQAV-AAGAYADVALERALRQNP---MSGADRGLVMELAYGAIRQRQW 71 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 +DA LD + ++ L+ LL + + QIL + + A V+ +VE AK K R A Sbjct: 72 LDAWLDRLGKVPACKQPPVLRWLLHLGLYQILRMQRIPAAAAVNTSVELAKTGKLAR-LA 130 Query: 122 KLVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR R + + R+A +P W E+L + G+ + A Sbjct: 131 PVVNGILRAALRARDAGMVLLEPEDSAARLAQAESLPLWLVEQLLVWRGEVGAELFARAS 190 Query: 173 ISPLYIDLTVKFDI----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 +DL + E + + G+ + + PG+ +G Sbjct: 191 NQVPTLDLRINRRRTSRENVRLALEAIGVESTPIESCPDGLMVTGSAGDLSQWPGYQQGH 250 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 W VQD SA + L G +LD CAAPGGK L + +V A+D S RL++L Sbjct: 251 WCVQDRSAQLVAPLLGPQPGDRILDACAAPGGKATHLVELMGGSGEVWAVDRSAGRLKRL 310 Query: 280 RCNLDRLHLYAEDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 N RL + DA + + F +LVDAPCS GT+ RH D W Sbjct: 311 AENAARLGGDCLHALVADATNLLAVKPSWRGSFQRILVDAPCSGLGTLARHADARWRVTP 370 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + Q KLL + + GG +V++ C++ ++ + ++ L P Sbjct: 371 LQVEGLVILQSKLLEGLLPLLSSGGRLVYATCTIHPAENFDQIKAFLGRHPE-------- 422 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 LS ++ PD G DGF++ L Sbjct: 423 ------------LSLSQEQQLWPD-------PEHGGDGFYSAVL 447 >gi|78185142|ref|YP_377577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. CC9902] gi|78169436|gb|ABB26533.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. CC9902] Length = 445 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 116/466 (24%), Positives = 188/466 (40%), Gaps = 60/466 (12%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R ++ +L V L+ D R D+ L + +R + Sbjct: 8 GIAPRQLAWKVLQAV-AAGAYADVALERCLRDHPLRG---PDRGLATELAYGAIRQRRVL 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 D LD + ++ L+ LL V + Q+L + + A V+ VE AK R A Sbjct: 64 DGWLDRMGKVPASKQPPKLRWLLHVGLYQLLLMERIPSAAAVNTTVELAKVSGLGR-LAP 122 Query: 123 LVNSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +VN +LR V R R+A + +P+W L + G+E A++ AC Sbjct: 123 VVNGLLRGVLRAHEAGEMLELSADPAIRLAQQTSLPDWLAASLIQWRGQEGAAAVAAACN 182 Query: 174 SPLYIDL----------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V D+ + + G+++ + + PG+ EG W Sbjct: 183 YVPDLDLRINRLRSTPEQVGRDLAEAGIETRPISGCADGLQVLGHSGDLRNWPGYVEGHW 242 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD +A L VLD CAAPGGK L + ++ A+D S RL+++ Sbjct: 243 CVQDRAAQWVAPLLEPKPGDRVLDACAAPGGKATHLAELMGDVGEIWAIDRSAGRLKRVA 302 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L + + DA ++ F ++L+DAPCS GT+ RHPD W Sbjct: 303 VNAARLGLGSIQALAADAAQLSRERPEWNETFQSILIDAPCSGLGTLARHPDARWRMTPK 362 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + Q+ LL + + PGG +V++ C++ ++ + V +L Sbjct: 363 AIQELLPQQQALLDGLVPLLAPGGRLVYATCTMHPAENAQQVANLLSRCSE--------- 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ E + PD G DGF+A L+R+ Sbjct: 414 -----------LTLEREQQRWPD-------AEEGGDGFYAAVLQRV 441 >gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270] gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270] Length = 434 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 100/456 (21%), Positives = 191/456 (41%), Gaps = 48/456 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R ++ +L + + + T LL+ + +S D +R IV TL +D ++ Sbjct: 2 RKLAIEILCEIKDENSNSTNLLNKSTKN-----ISDLDSKFLREIVYGTLENRIYLDYII 56 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + + +LR+S+ QI+++D + ++A+++ AV K K + F+ VN Sbjct: 57 KKLCKLRIKKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKL-KKFSSFVNG 115 Query: 127 ILRRVSREKIELLQR--------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 LR R K + ++ I+ + L YG+E + I + ++ + Sbjct: 116 SLRNFLRNKEDFMKIKVESEEEAISIKYSANMDIVKLLLGDYGREETIKILENSMTKPHF 175 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWVQDAS 229 + + E L E P +I+ F G + VQD Sbjct: 176 AIRISSFEKTEEKVVKDLEKDGYKLKKSEISKLTYFVENPTNILETESFKSGDFTVQDVG 235 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + ++ N VLD+C+APGGKT + + ++ A D+ K +L+K+ N RL Sbjct: 236 SILTGEILAPKENSKVLDICSAPGGKTCHLAFQMKNSGEIFANDIVKSKLKKIEENCKRL 295 Query: 287 HLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++ ++ DA Y + +L D CS G + R P++ R + I + Q Sbjct: 296 NVQNVKLLNFDASIYKEEYKEQFGYILCDVICSGIGVMDRKPEIKLFRSQETIDEIIELQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 RK+ + ++K G +V+S CS+ K ++EE V+ L K D+ Sbjct: 356 RKIFDNAVEYLKDKGEIVYSTCSVLKCENEENVKYFLEKHKN-----------LKIKDVE 404 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E +I++ P+ + +GFF + + Sbjct: 405 FLGKSEKFIKLLPEKQK--------HNGFFIIKFVK 432 >gi|332289287|ref|YP_004420139.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179] gi|330432183|gb|AEC17242.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179] Length = 440 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 118/461 (25%), Positives = 205/461 (44%), Gaps = 40/461 (8%) Query: 1 MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK M R V + ++ V+ + SL+ LL +A + +S +D L++ + Sbjct: 1 MKPQLSKKMPLRAVMAEVILQVLDQGKSLSSLLP-----AAQQRISAQDMGLLQEVCFGV 55 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 R LPR++ ++ ++ L K + LL V + Q+LY + +A VD V+ A + Sbjct: 56 CRVLPRLERIIGKLVAKPLKGKTRIVHCLLLVGLYQLLYTRIPAHAAVDEVVK-ATAVLK 114 Query: 117 NRHFAKLVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGK-ERVLAISDACI 173 F LVN ++RR RE+ + + ++ PEW L++ Y + R + + Sbjct: 115 VESFRGLVNGVMRRFLREQASILAVIDKHWQTLHPEWLVNLLKSCYPQNWRQIVEENNQK 174 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQD 227 P+++ + + +L A + ++ LP F +G VQD Sbjct: 175 PPMWLRVNHQHCSTEQYQQLLAQQHIASESAQPPSALRLQNAIAVEQLPNFEQGWVSVQD 234 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDR 285 A L NN ++LD CAAPGGKT ++ + ALDV RL+++ NL R Sbjct: 235 CHAQWAALLLDGQNNETILDACAAPGGKTTHILELAPQAVVTALDVEAGRLQRVEQNLQR 294 Query: 286 LHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L+ +A I +FD +L+DAPCS+TG IRRHPD+ W R DI + Sbjct: 295 LNQHANVICGDASQPQQWLQDGAMFDRILLDAPCSATGVIRRHPDIKWLRQPSDIEQLVA 354 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L +K G+++++ CS+ Q++ E ++ L + +L+ ++ Sbjct: 355 LQKQILQALWQRLKVNGVLLYATCSILPQENSEQIRSFLATH-SDAKLIAVDLGE----- 408 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + P G DGFF L + + Sbjct: 409 --QGIDTGFGFQCFPH--------QQGGDGFFYAKLVKQAE 439 >gi|254525327|ref|ZP_05137382.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas sp. SKA14] gi|219722918|gb|EED41443.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas sp. SKA14] Length = 443 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 122/453 (26%), Positives = 188/453 (41%), Gaps = 38/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G R++++ +L+ V + SL L A RD+ L+ A+ LR Sbjct: 13 APGAATRMLAARVLAQVFTRGRSLKAELAWALPKLA----DSRDRALLEALCFAVLRRRS 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DA L + L + L+ LL V AQ+ L++ +A + V+ A+ R A Sbjct: 69 TYDAALQSWMQKPLSARDADLRTLLMVGFAQLDVLELPAHAALSATVDAARALGRERQ-A 127 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--D 179 LVN+ILRR RE PEW E +E + + +++ Sbjct: 128 GLVNAILRRAQREGFPEQPA---RDAFPEWLAEAIERDWPAQAEAVFNESLQPAPLWLRA 184 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + L + L P ++ LPGFAEG VQD SA Sbjct: 185 NRQHGGRDKALAALAEAGIAAETSALSPDALRLAAPVAVNQLPGFAEGALSVQDLSAQCA 244 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL--- 288 VLD CAAPGGK+A L+ ++ ALD+ RRL + R R + Sbjct: 245 ADALAPAAGSRVLDACAAPGGKSAHLLERDPSLRLLALDIDARRLARARDTYARTGVGEH 304 Query: 289 -YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 D + FDA+L+DAPCS+TG IRR PDV++ R +DI Q +L Sbjct: 305 AQTLVADASDPGSWWDGVPFDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQARL 364 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L S ++PGG+++++ CS+ + ++ + V+ L+ P A + + A + Sbjct: 365 LEACWSMLRPGGVLLYATCSILRAENIDQVRAFLKWHPD---------AEAQPLGDAFGV 415 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG R + + DGFF L + Sbjct: 416 DCEGVAR-------QRLPGDNDADGFFYARLIK 441 >gi|295105557|emb|CBL03101.1| ribosomal RNA small subunit methyltransferase RsmB [Faecalibacterium prausnitzii SL3/3] Length = 443 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 92/441 (20%), Positives = 175/441 (39%), Gaps = 39/441 (8%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 + +LD E + L RD+ AI L +D +L+ L L + Sbjct: 17 EQDGFSNLVLDAELKR---QKLEGRDKAFASAIFYTVLEHRGTLDYILEQFLPKGLAKLD 73 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 ++++LR ++AQ Y+ V A V+ AV+ + K++ + LVN++LR+ ++ Sbjct: 74 APVREILRAALAQARYMQVPVSAAVNEAVKLTRTFKKS-SASGLVNAVLRKACGYDLDAA 132 Query: 140 QRIAGISII-----PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194 I + + + + L I L ++ A +L Sbjct: 133 VFTGEIQRLMVLGSAGLDVAKFLHKNYPDEALGILTYQADGGLTSLRANP-LKASAAQLC 191 Query: 195 AVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A++ G +++ S F +G + V+ ++ + G + Sbjct: 192 ALLTEQGAAEVRQGIVPGSVLARFAGSPADNELFRQGYYHVEGQASQLAALCVGAAPGET 251 Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDLCAAPGGKT + + ++ + D ++ R+ +R +DR+ + DA Sbjct: 252 VLDLCAAPGGKTILLAEQMQGTGELYSCDAAENRVGLIRTAVDRMGFTGVHTLCNDATKP 311 Query: 302 CPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDT-DDIVKSACFQRKLLLQGISFVKPGG 359 P D +L D PCS G + + PD+ + + + Q +L + +K GG Sbjct: 312 NPALPMADRILTDVPCSGLGILAKKPDLRYKKLEAARQAELLATQAAILDTAAALLKAGG 371 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S C++D ++++ + L+ P P + M G + + Sbjct: 372 RLVYSTCTIDPAENQKQIAAFLQRHPEFAVCAPDVP-----LPAGMTAGEYGCLSV---- 422 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 +GMDGFF L++ Sbjct: 423 -----PTRTGMDGFFLCVLQK 438 >gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91] gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91] Length = 426 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 105/447 (23%), Positives = 193/447 (43%), Gaps = 42/447 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L++ + V +L +L + ++ L+ + + ++ I TLR ++DA+L Sbjct: 6 LLAIQAIGEVFA-GANLNEVLRNIWQINS--RLTPQQRGAIQDIAYGTLRHYGQLDAILH 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L + SL LL +++ Q+ Y +A+VD AV +++ N + L+N++L Sbjct: 63 QLLNKP--AQDKSLHYLLAIALYQLCYSKAPAHAIVDHAVSSSRKITRNPAASGLINAVL 120 Query: 129 RRVSREK----IELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-- 181 R R++ ++ P+W+ ++L Y ++ + + ++ + + + Sbjct: 121 RNFMRQRTLLLDQIKSNEVARYSYPQWWIDKLRQQYPQDYKAILLAGNEHPAMILRINSL 180 Query: 182 ---VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 V + G P S+ LPGF+EG+ VQDA A L Sbjct: 181 RTSVNHYQAMLDAQGIGSEWLGGSALQLIRPVSVEKLPGFSEGLVTVQDAGAQFAAPLLD 240 Query: 239 TLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + VLD CAAPGGK+ + K+T LD + RL +L N RL + +I Sbjct: 241 VKAGMRVLDACAAPGGKSTHLAELTENIKLTVLDKYEDRLTRLTENFSRLQITDYQLICG 300 Query: 297 DAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 DA + +L+D +L D PCS++G + RHPD+ W R D A Q +L + Sbjct: 301 DAMNPSQWWNGQLYDRILADVPCSASGVVNRHPDIKWLRRPGDTDNFAQIQTTILNELWP 360 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ GG ++++ CS+ +++ + +K L L P + + Sbjct: 361 LLRHGGKLLYATCSVFNEENNLITEKFLSIHQDASRL-PCSHEEINNG------------ 407 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P DGFF L++ Sbjct: 408 QLLPGPH---------HDGFFYALLQK 425 >gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 7803] gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 7803] Length = 447 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 180/461 (39%), Gaps = 61/461 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ +R V+ +L V L+ L D+ L + +R+ Sbjct: 10 TPGLASRRVALEVLEAV-AAGAYADVALERALRQHP---LQAADRGLATELAYGAIRWRQ 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA LD + ++ L+ LL + + Q+L + + A V+ VE AKR K R Sbjct: 66 WLDAWLDKLGKVPARKQPPRLRWLLHLGLYQVLRMERIPAAAAVNTTVELAKRGKLAR-L 124 Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 A +VN +LR + + +A +P WF + L + G + ++ A Sbjct: 125 APVVNGLLRAALRAREAGDGLVQPTDPALALAQNQSLPLWFTQDLLRWCGPAQAAQVAQA 184 Query: 172 CISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEG 221 C +DL + + A A+ G+++ + PG+ EG Sbjct: 185 CNQVPPLDLRINRLRSSPAEMAARLAECSMPTAAIPGCPDGLQVLHSAGDLRQWPGYEEG 244 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQD +A L VLD CAAPGGK L + +V A+D S RL++ Sbjct: 245 HWCVQDRAAQWVAPLLAVEPGQRVLDACAAPGGKATHLAELMGDQGEVWAVDRSGGRLQR 304 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + + DA ++ FD +L+DAPCS GT+ RHPD W Sbjct: 305 VAANAARLGCGCINALAADAAQLLEERPQWRASFDRILLDAPCSGLGTLARHPDARWRIS 364 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 I Q LL + +KPGG +V++ C++ ++ E + L+ P Sbjct: 365 EASIADLVKLQAGLLDALVPLLKPGGRIVYATCTVHPAENTEQIHGWLQRHP-------- 416 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ ++ G DGF+ Sbjct: 417 --------------------QLVLASEQQRWPDPQGGDGFY 437 >gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116] gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116] Length = 451 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 125/457 (27%), Positives = 214/457 (46%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ V+ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRVVEKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P++I + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWIRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRSLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLARLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+D+PCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDSPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-TDAELLSLPFSDDKSAV--- 427 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 428 ------GFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus influenzae F3047] gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Haemophilus influenzae F3047] Length = 451 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 124/457 (27%), Positives = 215/457 (47%), Gaps = 41/457 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ V+ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRVVEKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF +L+ Y R + ++ P++I + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVNKLKKAYPNWREIIEANNQKPPMWIRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRSLLEEQGVSSKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAED 292 L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ A Sbjct: 252 TLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLNQQAIV 311 Query: 293 II----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q+ Sbjct: 312 VCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQK 371 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+L +KP G+++++ CS+ +++ E +Q+ L + EL+ L + Sbjct: 372 KILSALWEKLKPNGVLLYATCSVLPEENYEQIQEFLNAH-ADAELLSLPFS--------- 421 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + P + DGF+ L + Sbjct: 422 DDTSAVGFQFIPQ--------PNSGDGFYYAKLLKRA 450 >gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 444 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 199/457 (43%), Gaps = 33/457 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N R + L + + ++D+ + LS+ D+ +V+ + + Sbjct: 1 MEK-TNIRTLILEALMLIDVEGEYSHKVIDMALE--KYSYLSKADRGFFSKVVHGVVEYR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D ++ + R K ++++LR+++ QILY+D V D A+++ AV K + Sbjct: 58 LQLDFIIKKY--NGGKRIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVKLRRLTA- 114 Query: 120 FAKLVNSILRRVSREKIELLQRIA-GISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN ILR++S EK + +PE+ + ++ GK + + + + Sbjct: 115 LTGFVNGILRKISSEKETVSFDNIGIRYSMPEFLLDIIKENTGKYFDKTL-EYFLEGRPV 173 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---------GVWWVQDAS 229 + V + + L ++++ + GF + G ++ D S Sbjct: 174 SIRVNTSKSKVTDVVKELEESNIRAERSSLNDAVLYIRGFDKVDDISVIKSGKCYITDVS 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 +S+ +L N VLD+CAAPGGK+ I + A + + D+S+ ++ + N Sbjct: 234 SSMIAELIIPDNIKKVLDVCAAPGGKSFLLADKIDNEALIYSCDISENKVNLITENAKVQ 293 Query: 287 HLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + DA + + D V+ D PCS G I + PD+ + + ++++ A Q+ Sbjct: 294 GFKNIIPLVADARVFNERFAESDLVVADLPCSGIGIIGKKPDIKYRLNAENMISLAILQK 353 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L +VK GG ++FS C+L+K ++EE V L++ + V L + Sbjct: 354 EILDNVSQYVKIGGELIFSTCTLNKAENEENVSLFLKNHSN-FKAVDLTKRLKSILIEKF 412 Query: 406 ALS--PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G++++ P G DGFF RR Sbjct: 413 DKDELEKGYLKLIPG--------RDGCDGFFIAVFRR 441 >gi|85710227|ref|ZP_01041292.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1] gi|85688937|gb|EAQ28941.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1] Length = 414 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 141/440 (32%), Positives = 212/440 (48%), Gaps = 33/440 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G++AR + +L V+R+ +L D DQ L RAI LR+L Sbjct: 5 TGIHARRAALKMLDAVLRRGETLEQAAPGALRDVR----DANDQALARAIAGEALRWLTD 60 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA++D LP + +LR+ +AQ L L+ +AV+ + + Sbjct: 61 LDALIDSATRQRLPD-DAKPRSVLRLMLAQALRLETPPHAVIATGLPL---------LSG 110 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + V ++ + + +PE +ER +R + I+ + P +DL + Sbjct: 111 GPRRLAHGVFSTLMKREVALPDVPTLPENVRERWG-----DRAVEIAPGLVHPPEVDLHI 165 Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 K +T W KL L G +R+ I SL G+ +G WWVQD +A IP + G Sbjct: 166 KDAKQTPQWQAKLGGESLAPGHVRIPRGS-RIESLDGYKDGAWWVQDLAAMIPSMVIG-E 223 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 LDLCAAPGGKT L +G VTALD+SKRRL L+ NL R L A + DA Sbjct: 224 GKGHALDLCAAPGGKTMALASAGWDVTALDISKRRLGTLKENLKRTGLKASPVR-ADAMQ 282 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + PK FDA+L+D PC++TGT RRHPDVL I + QR L+ + +KPGG Sbjct: 283 WEPKHHFDAILLDTPCTATGTCRRHPDVLHRIGARQIAEMVEIQRGLVARAAELLKPGGT 342 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL++++ EE + + L P+ A + +A + +G +R P ML Sbjct: 343 LVYAVCSLEREEGEEQATWI----DSELGLQPMPIA-ADELPAGLAPTAQGHVRTHPGML 397 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G+DGFF R+ Sbjct: 398 ----PEQGGLDGFFVARWRK 413 >gi|315655374|ref|ZP_07908274.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii ATCC 51333] gi|315490314|gb|EFU79939.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus curtisii ATCC 51333] Length = 523 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 107/471 (22%), Positives = 181/471 (38%), Gaps = 47/471 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ L V + +L + L +RD +V TLR R DA Sbjct: 45 PARDVAFQALRRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDA 101 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + + L +LR+ + QIL + V DYA VD V+ A RD+ + A +VN Sbjct: 102 IIGLLSDRDIAALDPELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVN 160 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169 ++LR+V+ + + PEW L + + + Sbjct: 161 AVLRKVTEHDLSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGDLPGLL 220 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220 A P Y+ L + + + A + L Sbjct: 221 HAQNRPAYVTLCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVER 280 Query: 221 GVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 G+ V+D + + ++ + +DLCA PGGKTA V A +VS Sbjct: 281 GLAGVEDEGSQLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVS 340 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R E +R + +++ D D+ D VLVDAPCS G++RR P+ W Sbjct: 341 PHRAELVRDSTKAFTDQIVQVLQGDGRDFGRLHPGKADRVLVDAPCSGLGSLRRRPEARW 400 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + D+ Q++LL + VKPGG+V ++ CS ++ +VV+ +++ L Sbjct: 401 NKSATDLKDLTALQQELLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLRVL 460 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A ++ L P ++++ PD G D F +++ Sbjct: 461 DAPAVAREIIVNPEHDLGPGPYLQLWPD--------RDGTDAMFLALIQKK 503 >gi|332559578|ref|ZP_08413900.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332277290|gb|EGJ22605.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 410 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 137/434 (31%), Positives = 212/434 (48%), Gaps = 29/434 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ LL V+ + L+ L G +A ++ + + + LR L D + Sbjct: 5 ARGMAVTLLDAVLGEGKLLSQALADLPGAAAPAERARA-----QRLASSVLRHLGPADRL 59 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + P +++ +LR++ ++ A + VV AV+ A+R + +H A LVN+ Sbjct: 60 LAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLAGLVNA 116 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 +LRR++ L +P W ++ L +G+ V AI +P +DLT + + Sbjct: 117 VLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLTARPGL 172 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 L P + +LPG+ G WWVQDA+A++ V+L SV Sbjct: 173 SAPGEPLPTGSFRL------RAPGQVSALPGYEAGEWWVQDAAAALAVKLLDPQPGESVA 226 Query: 247 DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 DLCAAPGGKT QL +GA+VTALD+S+ RL +LR NL R L AE + Sbjct: 227 DLCAAPGGKTLQLAAAGARVTALDISEARLGRLRENLARTGLQAEVV--AADLLTWQGGP 284 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 F+A+L+DAPCS+TGTIRRHPD+ + +D ++ Q +L + + PGG +VF C Sbjct: 285 FEAILLDAPCSATGTIRRHPDLPFVKDGSELPGLVALQAAMLDHALHLLAPGGRLVFCTC 344 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL +++ E + +L P P + EG +R+ PD + Sbjct: 345 SLLEEEGEAQLAALLERHPELTVEWPTLPGV-----EPDWIGAEGGLRLRPDFWAEA--- 396 Query: 427 SSGMDGFFAVALRR 440 GMDGFF +RR Sbjct: 397 -GGMDGFFMARVRR 409 >gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 437 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 115/466 (24%), Positives = 195/466 (41%), Gaps = 60/466 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G R S +L V I L+ + F L D + + +R+ Sbjct: 1 MIKGYLQRKASWEILLKV-SSGIYSDHALEKVLKNYEFNSL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +D S ++ L+ LL + + Q+L +D + A + VE AK+ + Sbjct: 57 KFLDLWIDHTSKLSHTKQPPKLRWLLHIGLYQLLKMDKIPFSAAISSTVEVAKKTDL-KG 115 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR R + + + +P W + + N+ G + I+ Sbjct: 116 LAGTVNAILRNTVRHIEKEHVPKISSDEIERLSSLESLPIWLVKEIVNWVGIKEAKNIAK 175 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAE 220 A IDL + LN + GI L P SI LPG+++ Sbjct: 176 AFNKKPSIDLRINSLKTDLNKFLNELAECNINATAISQLKNGIALNSNPRSIKKLPGYSD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLE 277 G+W VQD S+ L + +LD C+APG KT L A++ A+D S++RL+ Sbjct: 236 GLWVVQDRSSQWVAPLLNPMKGEKILDACSAPGSKTTHLAQLANDDAEILAVDRSEKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL+RL++ + ++ DA + + FD +L+DAPCS GT+ R+PD W+ Sbjct: 296 ILQSNLERLNIKSVKTLKADATNLVDIQPNLISYFDKILIDAPCSGIGTLARNPDSRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D I + Q +LL + +K G +V+S C++ +++ ++++ L + Sbjct: 356 SKDKINQLILLQERLLESVLPLLKRNGTLVYSTCTICPEENNFLIKRFLTKNK------- 408 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + L E +I P DGF+A + Sbjct: 409 -----------EIKLDSEK--QILP-------KFDEPGDGFYAAKI 434 >gi|260557781|ref|ZP_05829994.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii ATCC 19606] gi|260408572|gb|EEX01877.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii ATCC 19606] Length = 434 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + P E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434 >gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa] Length = 527 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 113/479 (23%), Positives = 187/479 (39%), Gaps = 61/479 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDS-------------AFRLLSQRDQILVRAIVN 54 R VS+ L + L D G + L RD LV IV Sbjct: 62 RAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVG 121 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 T+R+ +D ++ + + + L Q+LR+ +I+ LD+ YAVVD V AK Sbjct: 122 GTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRLAK 181 Query: 113 RDKENRHFAKLVNSILRRV--------------SREKIELLQRIAGISIIPEWFKERLEN 158 +VN ILR++ + + +A + P W R Sbjct: 182 VSLRP-GAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWTK 240 Query: 159 FYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPT-------GGIRLKE 207 G+E+ + + L + N + +P +R+K Sbjct: 241 LLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLKVPHELSLHLDHFVRVKT 300 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264 + ++ +G+ VQD SA + V + S++D CAAPGGKT + + Sbjct: 301 GLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYMASQMHGQG 360 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGT 321 + A+D++K RL ++ + ++ F + D VL+DAPCS G Sbjct: 361 MLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLDAPCSGLGV 420 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + D+ W R +D+ + Q +LL VKPGG++V+S CS+D +++EE V L Sbjct: 421 LSKRADLRWNRRLEDLEELKKLQEELLDAASILVKPGGVLVYSTCSIDPEENEERVDAFL 480 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + P++ ++ G+ D V MDG FA L R Sbjct: 481 LRHP-EFRIDPVDRYVP-----PDFVTKRGFY--------SSDPVKHSMDGAFAARLIR 525 >gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus acidophilus ATCC 4796] gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus acidophilus ATCC 4796] Length = 446 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 112/465 (24%), Positives = 201/465 (43%), Gaps = 48/465 (10%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK +AR +S L V+ L+ +S L+ DQ L IV T+ Sbjct: 1 MKKLSTSKSARAISLETLIKVLGNGSYSNISLNNSLKNS---DLAIADQNLATRIVYGTI 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 ++ ++ L+ ++ + L K ++ LL +S+ QI++LD V + A++D A + AK+ + Sbjct: 58 QYRIFLEYQLNGLIKTKLTEK--YIKPLLLMSLYQIIFLDKVPNRAILDEANKLAKKFGK 115 Query: 117 NRHFAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 + + + + R +K ++ ++ +PEW + L + +G E+ ++ Sbjct: 116 HHSSGYRIVNGILRSFIRRGVILPDKNNEIEYLSIKESVPEWLVKYLISNWGIEKTKSVL 175 Query: 170 DACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGV 222 + P + +++ D + +L+ L + F G Sbjct: 176 SSINEPAKNSVRISMFSDKKKVFEELDNEGFNPNWSNLSANDIVLDHGGVSQSNLFKSGN 235 Query: 223 WWVQDASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278 +QD +AS + F VLD C+APGGKT Q VTALD+ +++L Sbjct: 236 LTIQDEAASLVVEAFDFDKDKPEHVLDACSAPGGKTVQLAESFKNGTVTALDIHEKKLRL 295 Query: 279 LRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 ++ N R+H+ DA + F +LVDAPCS G +RR P++ +T+ Sbjct: 296 VKENAKRMHVSDKVKTQACDAREAQARFDAGEFTKILVDAPCSGLGLLRRKPEIRYTKSL 355 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D+ Q +L + G +V+S CS+ +++E+VV+K L++ EL P Sbjct: 356 KDLKNLQKIQLAILDSVSLLLHVNGELVYSTCSISMEENEDVVKKFLQTHSN-FELKPFK 414 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + S G ++I PD G DGFF + Sbjct: 415 LSKLE--------SKTGMLKIMPD--------QDGNDGFFIAKFK 443 >gi|184159973|ref|YP_001848312.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU] gi|183211567|gb|ACC58965.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU] gi|322509890|gb|ADX05344.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii 1656-2] Length = 434 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQSRACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGK A A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKMAHLLEKFKPAQLIAIDQDPSRLVRVIENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + P E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434 >gi|296114826|ref|ZP_06833475.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295978640|gb|EFG85369.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 438 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 139/441 (31%), Positives = 212/441 (48%), Gaps = 27/441 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 R ++ +++ V+ R L ++ R RD+ + LR + Sbjct: 22 APADPTRDIAFDIVTGVIEHRRMLETSMEN---SPVARQAEPRDRAAAHRLGASVLRHMG 78 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 VL L P ++ +L + VAQ+L+L +A V +V A+R + FA Sbjct: 79 TATEVLSPFLKKEPPE---PVRAVLLIGVAQLLFLGTPVHAAVATSVALARR-RGLAPFA 134 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR++++ L + +P W I+ A + +DL Sbjct: 135 GLVNAVLRRIAQKGDGCLDGLDQERLDVPPWLWASWGRM-----ARPIAAALGTEPPLDL 189 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +++ +LP G +R + LPGFAEG +WVQDA+AS+P +L Sbjct: 190 SMRPG---CLPPPGGELLPNGTVRFAAGT-RVTELPGFAEGAFWVQDAAASLPARLLDAK 245 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAF 299 V DLCAAPGGKTAQL ++GA VTA++ RRLE+L NL RL L +++ DA Sbjct: 246 AGERVADLCAAPGGKTAQLALAGADVTAVERDPRRLERLGANLARLQLGDVVKVVQADAT 305 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + P DAVL+DAPCS+TGT+RRHPD LW + D+ A Q+ LL ++PGG Sbjct: 306 QWRPDAPLDAVLLDAPCSATGTVRRHPDALWIKRPRDLAALAAGQQALLKAAGDMLRPGG 365 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V++ CSL ++ + + L+ + + A +PEGW+R P M Sbjct: 366 RLVYAVCSLQPEEGPA-----CARAAEEMGLIADPFTPEELAFLPQARTPEGWVRTHPGM 420 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + GMDGFFA R+ Sbjct: 421 WAE----QGGMDGFFAARFRK 437 >gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM 43017] gi|256585471|gb|ACU96604.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM 43017] Length = 484 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 99/466 (21%), Positives = 163/466 (34%), Gaps = 46/466 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + L V + +L R ++ RD L + T R Sbjct: 35 TRDPARRAAFDALRAVTERDAYANLILPELLR---QRRITGRDAALATELTYGTARATGL 91 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA++ + L ++ LR+ Q+L + +A V V+ + D +R A Sbjct: 92 LDAIVARCVDRKLDTVDPVVRDALRLGAYQLLRTRIPHHAAVASTVDLVREDAGSR-VAG 150 Query: 123 LVNSILRRVSREKIELL------------QRIAGISIIPEWFKERLENF--YGKERVLAI 168 VN++LRRVS + + +A + P W + + A Sbjct: 151 FVNAVLRRVSEKDEQQWLAELTADSSDPLADLALRTSHPRWIARAFAEALGDKGDELRAA 210 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVM-----LPTGGIRLKELPESIVSLPGFAEGVW 223 +A + + L K + G+ L + EG+ Sbjct: 211 LEADDARPAVHLLAKPGQISAEELAAITGGDVAPYSPYGVHLPSGGGDLAESEVIEEGLA 270 Query: 224 WVQDASAS--------IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKR 274 VQD + P+ + LDLCA PGGKT L + A D + Sbjct: 271 TVQDEGSQLVAVASVNAPLGDAADGRDTRWLDLCAGPGGKTVVLGCLAQTMGATVDAVEV 330 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + R + + D +D VLVDAPCS G +RR P+ W + Sbjct: 331 AEHRARLVREATDGLPVTVHVTDGRAPELDGDYDRVLVDAPCSGLGALRRRPEARWRKQP 390 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 DI + Q +LL V+PGG+V + CS ++E VV + + EL+ Sbjct: 391 GDIAELTRLQTELLASAYRLVRPGGVVTYVVCSPHLAETEGVVMASAQR--LGAELIDAR 448 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A+ + + +++ P G D F LR+ Sbjct: 449 VAFPGVPHLGDGPT----VQLWPH--------RHGTDAMFCAMLRK 482 >gi|148272956|ref|YP_001222517.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830886|emb|CAN01830.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 499 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 108/468 (23%), Positives = 170/468 (36%), Gaps = 47/468 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ ++S V LL + +A LS +D L + TLR D Sbjct: 45 PARRVAYEVVSAVRESDAYANLLLPVRIRRAA---LSAQDAALATELAYGTLRMSGYYDR 101 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ + + +LR+SV Q+L + VA +A V+ V+ A+ +R VN Sbjct: 102 VIELAAGRPVTAIDAPILDVLRLSVHQLLSMRVATHAAVNEGVDMARAV-GSRSATGFVN 160 Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE----RVLAIS 169 +LR ++R + ++ A P W L +E + + Sbjct: 161 GVLRTITRSEPAEWRQRVLDSAASDDERLALEHSHPLWVLRALRQALAREGRADELEDLL 220 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 A + + L + T + + + PG AEG VQD Sbjct: 221 RADNAAPAVSLVALPGLATV-EETQEQPAAFSPVGAYLEGGDPMDAPGVAEGRVRVQDEG 279 Query: 230 ASIPVQLFG----TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + LDLCA PGGK A L + AL ++ L R L R Sbjct: 280 SQLAALALSRARAVTPGERWLDLCAGPGGKAALLAAEAGRSGAL-LTANELVPARAGLVR 338 Query: 286 LHLYAE----DIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 L A ++ E+D FD +L+DAPCS G +RR P+ W + D+ Sbjct: 339 DALRAVAGDTEVWELDGTTVGESHPGAFDRILLDAPCSGLGALRRRPEARWRKTPRDVAG 398 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI------PVELVPL 393 Q L+ I + PGGI+ + CS ++ +VQ L+ P L + Sbjct: 399 LGALQTGLIDSAIGALAPGGILAYVTCSPHLAETRAIVQAALQRHPDVTALDTRAVLQEV 458 Query: 394 NSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + D G +++ P G D F L R Sbjct: 459 ADGDLELPDADPDAGARGSSVQLWPH--------RHGTDAMFIALLTR 498 >gi|116618607|ref|YP_818978.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097454|gb|ABJ62605.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 448 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 111/458 (24%), Positives = 195/458 (42%), Gaps = 44/458 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+++ L+ + + L+ L + D L+ +V ++ + Sbjct: 10 NPRVLAVQTLAKI-KNGAYSNLQLNQVIKQHK---LGEADTRLLTTLVYGVIQHRLTFEY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ + S + +++LL ++ Q+ YLD + +A+ + ++E AK + K V Sbjct: 66 WLEPFVGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAK-ILGHVGTGKFV 122 Query: 125 NSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +IL +SR + + +QR++ + +P W E L G ER I Sbjct: 123 TAILHNISRKGLRSVADIGDDIQRLSIEASLPVWLVEELIKQNGDERARQIIATINDAPK 182 Query: 178 IDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + T + A + S + +G +QD S Sbjct: 183 QSIRVNTLLATDQEVVTALESENFTITASSVAAHAFLVSGGHVASSKAYHDGWLTLQDES 242 Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 A +PV+ + + D AAPGGKT QL A +TALDV + +++ + N +R Sbjct: 243 AMLPVESLHLTPEVKSILDAAAAPGGKTTQLAQYSAPDAVITALDVHEHKIKLINNNAER 302 Query: 286 LHL-YAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 LH+ +DA K FD +LVDAPCS G +RR P++ + + +D+ A Sbjct: 303 LHVADKIHARVLDARKVPEQIDKKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVESLAR 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L + GI+V+S C++ +Q++++VV L P EL+P + Y +D Sbjct: 363 LQTQILDSVSQNLAKNGIMVYSTCTILRQENDDVVTNFLEDHPN-FELIPTETTYKLKLD 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + + PD DGFF LR+ Sbjct: 422 HG-----EKALHVYPDDY--------HTDGFFVATLRK 446 >gi|227431998|ref|ZP_03914018.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352283|gb|EEJ42489.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 448 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 195/458 (42%), Gaps = 44/458 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+++ L+ + + L+ L + D L+ +V ++ + Sbjct: 10 NPRVLAVQTLAKI-KNGAYSNLQLNQVIKQHK---LGEADTRLLTTLVYGVIQHRLTFEY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ + S + +++LL ++ Q+ YLD + +A+ + ++E AK + K V Sbjct: 66 WLEPFVGS--KKIDPWVRELLYTAIFQMEYLDKIPQHAIFNESIEVAK-ILGHVGTGKFV 122 Query: 125 NSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +IL +SR + + +QR++ + +P W E L G ER I Sbjct: 123 TAILHNISRKGLRSVADIGDDIQRLSIEASLPVWLVEELIKQNGDERARQIIATINDAPK 182 Query: 178 IDLTVKFDIET--------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + T + + S + +G +QD S Sbjct: 183 QSIRVNTLLATDQAVVTALESENFTITASSVAAHAFLVSGGHVASSKAYHDGWLTLQDES 242 Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 A +PV+ + + D AAPGGKT QL A +TALDV + +++ + N +R Sbjct: 243 AMLPVESLHLTPEVKSILDAAAAPGGKTTQLAQYSAPDAVITALDVHEHKIKLINNNAER 302 Query: 286 LHL-YAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 LH+ +DA K FD +LVDAPCS G +RR P++ + + +D+ A Sbjct: 303 LHVADKIHARVLDARKVPEQIDKKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVESLAR 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L + GI+V+S C++ +Q++++VV K L P EL+P + Y +D Sbjct: 363 LQTQILDSVSQNLAKNGIMVYSTCTILRQENDDVVTKFLEDHPN-FELIPTETTYKLKLD 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + + P+ DGFF LR+ Sbjct: 422 HG-----EKALHVYPNDY--------HTDGFFVATLRK 446 >gi|28378317|ref|NP_785209.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1] gi|28271152|emb|CAD64057.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1] Length = 447 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 108/467 (23%), Positives = 185/467 (39%), Gaps = 46/467 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + G R ++ L+ + + L+ D + +RD L+ +V ++ Sbjct: 1 MSTVGNTPRWLAVAALAKI-KNGAYSNLQLNQLINDHQ---MDRRDINLLTNMVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++ L + + +++LL ++ Q YLD + AV + +E AK K + Sbjct: 57 RLTLEYWLTPFVRHP-HQIDPWVRELLLSALYQWQYLDKIPQRAVFNETIEIAK-VKGHP 114 Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + V +L ++ R +R++ +P W + L G E++ I + Sbjct: 115 GIRRFVTGVLHQMDRSGLPSFDAIKNPDERLSVTYSMPIWLIQELRRQLGAEKMERILSS 174 Query: 172 CISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 P L V + T L + L ++ G++ Sbjct: 175 LNQPAKQALRVNPALSTVEDVTTALINDGLTITPSEISPLGLIATDGQAINTEAMRYGMF 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278 VQD SA + V N VLD CAAPGGKT Q G V ALD+ +++ Sbjct: 235 TVQDESAQLVVPALNPQPNDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKL 294 Query: 279 LRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + N R+H+ A ++ + FD +LVDAPCS G +RR P++ + + Sbjct: 295 IGQNAARMHVADRVEATELDARKVETQFNAESFDRILVDAPCSGLGLMRRKPEIRYEKQL 354 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D + Q +L +K GGI+ +S C++ +Q++++V+ K L P EL Sbjct: 355 QDSLNLQRIQLAILTAVAPTLKKGGIMTYSTCTILQQENQDVITKFLADHP-DFELQTTP 413 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D E + I PD DGFF LR+ Sbjct: 414 TERDLKTDRT-----EKTLSIYPDDYLS--------DGFFIACLRKK 447 >gi|193078768|gb|ABO13846.2| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 434 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETEDFEQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + P E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIA 434 >gi|317495215|ref|ZP_07953585.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum M424] gi|316914637|gb|EFV36113.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum M424] Length = 441 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 104/459 (22%), Positives = 196/459 (42%), Gaps = 39/459 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +N R +S +L + ++ L+ + L ++D+ + +V T++ Sbjct: 2 SNINTRKISYEILCDIFQEDAYSNITLNKYFNKYK---LEEQDKRFISEVVYGTIKNKMY 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ +L R K ++ ++ +++ Q+LY+D +A++D AV+ +K+ N Sbjct: 59 LEHILKNYSKG---RVKPKVKIIIIMAIYQLLYMDKTPSFAIIDEAVKLSKKILGN-ITG 114 Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN ILR + R ++ + PE L+ YGKE+ +I + S Sbjct: 115 NFVNGILRNIERNLNDLALKYKNKEEKFYIENSCPEELYSILKRQYGKEKAQSIVKSFNS 174 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEGVWWVQDASA 230 + E+ KL + L + L + ++ F EG + VQD ++ Sbjct: 175 KSKNSIRYNPLKISKESLVEKLGSNALSSDICEDSLLLNKLDINNKYFKEGYYIVQDEAS 234 Query: 231 SIPVQLF--GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286 S+ ++LD CAAPGGK+ + + + + D +L+ ++ N+ +L Sbjct: 235 SLVACAIGENVSTKYNILDTCAAPGGKSLHIASKYFNSSLISCDKYIHKLKLIQENIKKL 294 Query: 287 HLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + E D + FD V+ D PCS G I+ P++ + I A Q Sbjct: 295 EIDNIKTYEQDATKCNIDFLNNFDIVICDVPCSGIGVIKNKPEIKYKITDKYIESIAALQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K++ +VK GG++V+S C++DK+++ E +++ L + L + K Sbjct: 355 YKIIENSKGYVKVGGVLVYSTCTIDKRENIENIERFLNENK-DFRLEKITLNNSKV---- 409 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + G I I PD E DGFF LR++ + Sbjct: 410 -KVQDNGTIEILPDDYE--------CDGFFIAKLRKMEE 439 >gi|152985582|ref|YP_001345414.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas aeruginosa PA7] gi|150960740|gb|ABR82765.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas aeruginosa PA7] Length = 434 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 119/455 (26%), Positives = 201/455 (44%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L + ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALPAQL-----DKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY V +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADNDIHALLLIGLYQLLYTRVPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ A+ A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALQQAWP-EQLEALCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + +T+ +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDTYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + +L + VLD C APGGKT L+ + V A+D+ + RL ++R NL RL L Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLEIQPELGEVVAVDLEQSRLLRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ + F +L+DAPCS+TG IRRHPD+ R DDI A Q + Sbjct: 294 EARLVAADARATGEWWDGQPFQRILLDAPCSATGVIRRHPDIKLARKPDDIAALAQLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG++V++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLVYATCSVMPSENSDGIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQAHGRQLLPQV--------DGHDGFYYAKLIKI 431 >gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus plantarum subsp. plantarum ST-III] Length = 447 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 108/467 (23%), Positives = 186/467 (39%), Gaps = 46/467 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + G R ++ L+ + + L+ D + +RD L+ +V ++ Sbjct: 1 MSTVGNTPRWLAVAALAKI-KNGAYSNLQLNQLINDHQ---MDRRDINLLTNMVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++ L + + +++LL ++ Q YLD + AV + +E AK K + Sbjct: 57 RLTLEYWLTPFVRHP-HQIDPWVRELLLSALYQWQYLDKIPQRAVFNETIEIAK-VKGHP 114 Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + V +L ++ R + +R++ +P W + L G E++ I + Sbjct: 115 GIRRFVTGVLHQMDRSGLPSFDAIKDPDERLSVTYSMPIWLIQELRRQLGAEKMERILSS 174 Query: 172 CISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 P L V + T L + L ++ G++ Sbjct: 175 LNQPAKQALRVNPALSTVEDVTTALINDGLTITPSEISPLGLIATDGQAINTEAMRYGMF 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278 VQD SA + V N VLD CAAPGGKT Q G V ALD+ +++ Sbjct: 235 TVQDESAQLVVPALNPQPNDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKL 294 Query: 279 LRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + N R+H+ A ++ + FD +LVDAPCS G +RR P++ + + Sbjct: 295 IGQNAARMHVADRVEATELDARKVETQFNAESFDRILVDAPCSGLGLMRRKPEIRYEKQL 354 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D + Q +L +K GGI+ +S C++ +Q++++V+ K L P EL Sbjct: 355 QDSLNLQRIQLAILTAVAPTLKKGGIMTYSTCTILQQENQDVITKFLADHP-DFELQTTP 413 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D E + I PD DGFF LR+ Sbjct: 414 TERDLKTDRT-----EKTLSIYPDDYLS--------DGFFIACLRKK 447 >gi|225874679|ref|YP_002756138.1| putative ribosomal RNA small subunit methyltransferase B [Acidobacterium capsulatum ATCC 51196] gi|225792848|gb|ACO32938.1| putative ribosomal RNA small subunit methyltransferase B [Acidobacterium capsulatum ATCC 51196] Length = 440 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 111/442 (25%), Positives = 183/442 (41%), Gaps = 12/442 (2%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ LL + LL L+ +D+ LV +V TLR+ P +D Sbjct: 4 PARRVAFDLLQRMATSDAHSDELLRTM----KVNALAAQDRNLVTTLVLGTLRWQPALDQ 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L L R ++ LR+ Q+L+LD V +AV++ +VE K + LV Sbjct: 60 ILLQFLTRPDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVK-LSNEAYATGLV 118 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N++LR+V A + R + + D SP+ + + Sbjct: 119 NAVLRKVMHMPRGAGMDAAAAHPAWLAARWRRHFGAEAAQAICEYDQQASPVALRVQSAN 178 Query: 185 DIETW-AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN- 242 E + + L + FAEG VQD + + +L Sbjct: 179 PAEELTGEGVECAPGEWLNDACRVLRGDVARTQAFAEGRVRVQDEGSQLVAELAAAAMPE 238 Query: 243 -LSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLD CAAPGGKTA L A++ AL++S+RR + + + + + DA Sbjct: 239 AKRVLDACAAPGGKTAVLAERLAEARIVALEISERR-REQMKRNLKAYEGRVECVAGDAS 297 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + +D +L DAPCS TGT+ R+P++ +D+ + Q +L +KPGG Sbjct: 298 ALPAEPEYDLILCDAPCSGTGTMARNPEIRLRVYPEDLTRQQARQVAILRGVAGALKPGG 357 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 VV++ CSL+ +++E+VV+ V + V + + + E + + Sbjct: 358 RVVYATCSLEPEENEDVVRAVAARVGLRVVEMTPLVEQLAARGVLTERGRENVLAAITND 417 Query: 420 LEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L R+ Sbjct: 418 QLRTLPGVHPCDGFFAAVLERV 439 >gi|116072280|ref|ZP_01469547.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107] gi|116064802|gb|EAU70561.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107] Length = 445 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 114/466 (24%), Positives = 187/466 (40%), Gaps = 60/466 (12%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R ++ +L V L+ D + D+ L + +R + Sbjct: 8 GIAPRQLAWKVLQAV-AAGAYADVALERCLRDHPLQG---PDRGLATELAYGAIRQRRIL 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 D LD + ++ L+ LL V + Q+L + + A V+ VE AK A Sbjct: 64 DGWLDRMGKVPAAKQPPKLRWLLHVGLYQLLMMERIPSAAAVNTTVELAK-VSGLARLAP 122 Query: 123 LVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +VN +LR V R + ++A + +P+W L + G E A++ AC Sbjct: 123 VVNGLLRGVLRAHESGETLELSADPAIQLAQQASLPDWLAASLIQWRGPEGAAAVAAACN 182 Query: 174 SPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V D+ + + G+++ + PG+AEG W Sbjct: 183 HVPDLDLRVNRLRSTPEQVGRDLAEVGIETCPIAGCANGLQVLGHSGDLRHWPGYAEGYW 242 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 VQD +A L VLD CAAPGGK L + ++ A+D S RL+++ Sbjct: 243 CVQDRAAQWVAPLLDPNPGDRVLDACAAPGGKATHLAELMGDVGEIWAVDRSAGRLKRVA 302 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L + + DA ++ F ++L+DAPCS GT+ RHPD W Sbjct: 303 VNAARLGLGSIQALAADAALLSKERPEWREAFQSILIDAPCSGLGTLARHPDARWRMTPK 362 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I Q+ LL + + PGG +V++ C++ ++ E + +L+ Sbjct: 363 AIQDLLPQQQALLDGLVPLLAPGGRLVYATCTMHPAENGEQMANLLKRCSE--------- 413 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ E + PD G DGF+A L+R+ Sbjct: 414 -----------LTLEREQQRWPD-------AEEGGDGFYAAVLQRV 441 >gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149] gi|237885740|gb|EEP74568.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149] Length = 507 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 98/462 (21%), Positives = 165/462 (35%), Gaps = 44/462 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +++ V R +L + L+ RD + TLR L +DA+ Sbjct: 61 PRHVAYQVVAAVHRDDAYANLVLPVLLR---QEGLTGRDAAFATELTYGTLRHLGTLDAI 117 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + R ++ LR+ Q+L+ V +A V V+ + N+ Sbjct: 118 LTDAAGRDVARIDPPVRDALRLGAYQLLHTRVPAHAAVSSTVDLVRTV--GIGATGFANA 175 Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171 +LR V+ + ++ P+W G + + Sbjct: 176 VLREVAGRDADAWVAKLAPAYESDPIGHLSLAYSHPQWIVRSFAEALGGDLGETTRLLIE 235 Query: 172 CISPLYIDLTVKFDIET---WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L + + A ++ + + LP AEG VQD Sbjct: 236 NNERPPVHLCARPGLADPVVLADEVGGAPGAFSPYAVYLAGGAPGDLPALAEGRAHVQDE 295 Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLR 280 + + + LDLCA PGGK A GA++TA++VS+ R + Sbjct: 296 GSQLVANALAVAPLDGPDAHWLDLCAGPGGKAGLLGALAAQRGARLTAVEVSEHRARLVG 355 Query: 281 CNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L + + A P+ FD VLVDAPC+ G +RR P+ W + D+ Sbjct: 356 QATRGLPVTVLHTDGRTVGADAELPEGHFDRVLVDAPCTGLGALRRRPEARWRKQPSDLP 415 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 QR+LL + +PGG+V + CS ++ V + R + +P + V Sbjct: 416 PLTRLQRELLSAALRAARPGGLVAYVTCSPHTVETHVTVTEAARRAGVPADFVDARPLLP 475 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L +++ P G D F LRR Sbjct: 476 AGMP---GLGDGPSVQLWPH--------RHGTDAMFLAVLRR 506 >gi|169794225|ref|YP_001712018.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii AYE] gi|215481783|ref|YP_002323965.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB307-0294] gi|301510400|ref|ZP_07235637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB058] gi|332850303|ref|ZP_08432637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013150] gi|332871589|ref|ZP_08440083.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013113] gi|169147152|emb|CAM85011.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii AYE] gi|213987633|gb|ACJ57932.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB307-0294] gi|332730761|gb|EGJ62071.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013150] gi|332731443|gb|EGJ62735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6013113] Length = 434 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + P E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434 >gi|149186386|ref|ZP_01864699.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21] gi|148829975|gb|EDL48413.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21] Length = 414 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 149/437 (34%), Positives = 216/437 (49%), Gaps = 36/437 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G++AR + LL V R+ +L + D D+ L RAI + LR+L Sbjct: 7 PGIHARRAALRLLDAVFRRGETLDIAFNAATKDVRKFE----DKALARAITSEVLRWLVD 62 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D +D +LP + +LR+ +AQ L LD +AV+ + A Sbjct: 63 LDRGIDSATKKALPD-DSKARMVLRMMLAQWLRLDTPPHAVIATCLPL---------LAG 112 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + V + + +PE +R ER AI+ P +DLT+ Sbjct: 113 GPRRLAHGVFSTLTKREIALPESPTLPEDVAQRWG-----ERAEAIARGLAEPPPLDLTL 167 Query: 183 --KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 E W +L A L G +RL E++ LPGFAEG WWVQD +AS+PV+L G Sbjct: 168 KDPDQTEIWKTRLAADSLTPGHLRLPRG-ENVEKLPGFAEGEWWVQDLAASLPVRLLGAG 226 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCAAPGGKT QL G +VT+LD+SKRRL+ L+ NL R L A + DA Sbjct: 227 EGRHVLDLCAAPGGKTLQLAAQGWQVTSLDISKRRLDLLKVNLKRTGLKASAVR-ADALA 285 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + PK FDA+L+DAPC++TGT RRHPDV+ I + A Q LL + ++KPGG+ Sbjct: 286 WEPKHQFDAILLDAPCTATGTARRHPDVIHRIGQRQIEEMAELQASLLARAAGWLKPGGV 345 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL++++ E P + + P+ + S +G +R P ML Sbjct: 346 LVYATCSLEREEGEGQ------ELPSSLGIAPIAQDDLPD---GINPSDDGTLRTDPGML 396 Query: 421 EKIDGVSSGMDGFFAVA 437 + + G+DGFF V Sbjct: 397 LE----NGGIDGFFIVR 409 >gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359] gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359] Length = 431 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 207/453 (45%), Gaps = 41/453 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N RL++ LL +++ LD E DS +L+ RD+ ++ +V +R + Sbjct: 2 RTNVRLLAYRLLRKYEKEK-----FLDREDVDSVLSVLNDRDRRFLKELVWGVMRKEELL 56 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++ +L + +++ LR+ V Q+L++D V DYA V V+ K N +F K Sbjct: 57 DWYINQLLRNP--DIPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK----NENFKK 110 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN++LRRV + + P+W + +F +E VL I + PL L V Sbjct: 111 LVNAVLRRVKSVPPPSDLHL--VYSHPKWLVDYWRSFLPEEVVLRIMEWYQKPLPTVLRV 168 Query: 183 K---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 E L+ + +K+L + EG+ VQ S+ I Sbjct: 169 NSLVTTREEVIEILSKEGTEAIYGKHSPFSVVIKKLGVPLNDSKVITEGLATVQGESSQI 228 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 L N+ VLD C+APGGKT + + ++ A DVS RL+ + ++ RL L Sbjct: 229 VPLLMDLEPNMKVLDTCSAPGGKTTFIAELMKDKGEILATDVSMERLQLVEKHVRRLKLS 288 Query: 290 AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + I DA FD +LVDAPCSS GT R HP+VL ++ + + Q ++ Sbjct: 289 SVKIKLADAERLTEFIQDEFDRILVDAPCSSLGTARNHPEVLRRAKKEEFKELSEKQFRI 348 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L Q +K GGI+++S C++ K+++ EV++ +P VE++ L + + Sbjct: 349 LSQSWKLLKKGGILLYSTCTITKEENTEVIKAFAEQTP-DVEVIDLRKRL-EDYGVEGLW 406 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G++ + PD F+ AL++ Sbjct: 407 DGFGFL-MLPDETLTP---------FYVSALKK 429 >gi|91774540|ref|YP_544296.1| sun protein [Methylobacillus flagellatus KT] gi|91708527|gb|ABE48455.1| sun protein [Methylobacillus flagellatus KT] Length = 425 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 105/446 (23%), Positives = 195/446 (43%), Gaps = 39/446 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ + V+ +L+ +L+ + R ++ + + + + TLRF R++A+L Sbjct: 6 QLAAQAVGQVLD-GRNLSVVLETLFQH--QRDITPQQRAASQDLTYGTLRFYARLEALLQ 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L L + LL VS+ Q++Y + VV+ AV A + ++ LVN++L Sbjct: 63 QLLQKPLS--DAFIHHLLLVSLYQLVYDRAGAHTVVNQAVLAAAKTRKT-WAKGLVNAVL 119 Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLTVK 183 R R++ L +RIA P+W+ +L Y + P+ + + + Sbjct: 120 RNFLRQRAMLERRIADDEVAQYSYPQWWINKLRQQYPVHWQSMLEAGNQHPPMTLRVNRR 179 Query: 184 FD-IETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 D ++ +L A L + E + LPGF G VQD A Sbjct: 180 HDDAASYLERLRAAGLNARTLDEQAVMLESAVPVTRLPGFEAGHASVQDWGAQFAAMELD 239 Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295 + + VLD C APGGKT ++ + ++TA+D RL +++ NL+RL L A Sbjct: 240 VADGMRVLDACCAPGGKTGHVLELADVRMTAMDNDAHRLLRVQQNLERLGLSASLVQGDA 299 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + + +D +L D PCS++G +RRH D+ W R DI A QR +L + Sbjct: 300 ANPDAWWDGMPYDRILADVPCSASGIVRRHVDIKWLRREQDIAAFAEQQRLILQGLWRLL 359 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 GG +++ CS+ +++++ + + L++ P + + ++ Sbjct: 360 AKGGKLLYVTCSVFHEENQQQIARFLQTQPDA-----------RQMPCKHGTLQSNQGQL 408 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P + DGFF L+++ Sbjct: 409 LPG---------TEHDGFFYALLQKV 425 >gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM] gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM] Length = 455 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 110/461 (23%), Positives = 200/461 (43%), Gaps = 45/461 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +AR +S L V+ L+ +S L+ DQ L IV T+++ Sbjct: 14 STSKSARAISLETLIKVLGNGSYSNISLNNSLKNS---DLAIADQNLATRIVYGTIQYRI 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L+ ++ + L K ++ LL +S+ QI++LD V + A++D A + AK+ ++ Sbjct: 71 FLEYQLNGLIKTKLTEK--YIKPLLLMSLYQIIFLDKVPNRAILDEANKLAKKFGKHHSS 128 Query: 121 AKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 + + + R +K ++ ++ +PEW + L + +G E+ ++ + Sbjct: 129 GYRIVNGILRSFIRRGVILPDKNNEIEYLSIKESVPEWLVKYLISNWGIEKTKSVLSSIN 188 Query: 174 SPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQ 226 P + +++ D + +L+ L + F G +Q Sbjct: 189 EPAKNSVRISMFSDKKKVFEELDNEGFNPNWSNLSANDIVLDHGGVSQSNLFKSGNLTIQ 248 Query: 227 DASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCN 282 D +AS + F VLD C+APGGKT Q VTALD+ +++L ++ N Sbjct: 249 DEAASLVVEAFDFDKDKPEHVLDACSAPGGKTVQLAESFKNGTVTALDIHEKKLRLVKEN 308 Query: 283 LDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 R+H+ DA + F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 309 AKRMHVSDKVKTQACDAREAQARFDAGEFTKILVDAPCSGLGLLRRKPEIRYTKSLKDLK 368 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q +L + G +V+S CS+ +++E+VV+K L++ EL P + Sbjct: 369 NLQKIQLAILDSVSLLLHVNGELVYSTCSISMEENEDVVKKFLQTHSN-FELKPFKLSKL 427 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + S G ++I PD G DGFF + Sbjct: 428 E--------SKTGMLKIMPD--------QDGNDGFFIAKFK 452 >gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium smegmatis str. MC2 155] gi|118170408|gb|ABK71304.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium smegmatis str. MC2 155] Length = 464 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 110/479 (22%), Positives = 177/479 (36%), Gaps = 61/479 (12%) Query: 1 MKSGM-------------NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 MK AR V+ +L V + L + R + RD Sbjct: 1 MKPNHPPRKRPPRRKPLDPARRVAFDVLRAVSERDAYANLALPAMLRE---RGIDGRDAA 57 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + R L +DAV++ R L LLR+ Q+L V +A V Sbjct: 58 FATELTYGACRSLGLLDAVIERAAGRPTDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTT 117 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKE 154 VEQA + + A VN +LR +S + A + P W + Sbjct: 118 VEQAG-IEFDSARAGFVNGVLRTISGRDEQAWIAELAPSAETDPVGHTAFVHAHPRWIAQ 176 Query: 155 RLENFYGKE--RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP 209 + G + A+ + + + L + E A + + + Sbjct: 177 AFTDALGAAAGELDALLASDDARPVVHLAARPTAITAEELAEQAGGTVGRYSPYAVYLTG 236 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKT----AQLI 260 +P +G VQD + + + LDLC+ PGGKT + Sbjct: 237 GDPGRVPAVRDGAAQVQDEGSQLVARALTLAEVDGTDEGRWLDLCSGPGGKTALLASIGA 296 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 SGA+VTA++ ++RR + + N L ++ +D + + FD VLVDAPC+ G Sbjct: 297 ASGARVTAVEPAERRADLVEENTRGLG---VEVHRVDGRESGLQPGFDRVLVDAPCTGLG 353 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 +RR P+ W R D+ QR+LL I +PGG+V+++ CS ++ VV Sbjct: 354 ALRRRPESRWRRQPGDVAALTRLQRELLAAAIRLTRPGGVVLYATCSPHLAETVGVVADA 413 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +R P V + + D+ +++ P G D FA ALR Sbjct: 414 IRRHP--VTAMDTRPLFAPVDDLGAGPH----VQLWPH--------RHGTDAMFAAALR 458 >gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus viridans ATCC 11563] gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus viridans ATCC 11563] Length = 482 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 106/473 (22%), Positives = 203/473 (42%), Gaps = 53/473 (11%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 ++AR + ++ ++R + ++ + A +++ D+ L +V +++ + Sbjct: 26 KLSARFQAMESVNQIIRHNHFINQEVNRVLTEEA---VAEADRNLYTNLVYGSVQNYYTL 82 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 DA + + + K + LL VS Q+ YLD + +YAVVD AV ++ + N+ AK Sbjct: 83 DAFVRDFVAKP-NKVKSWVWSLLIVSAYQMYYLDNIPNYAVVDEAVRIVRK-RGNQTLAK 140 Query: 123 LVNSILRRVSREKIELLQRIAG----------ISIIPEWFKERLENFYGKERVLAISDAC 172 N +LR +R + I + +P + + + +G + ++++ Sbjct: 141 FANGVLRNFTRRYETMADFIQTKEDPREKLTLEASLPPVWVDYFVDRFGLDEAEKLANSL 200 Query: 173 ISPLYIDLTVKFDIE--------TWAHKLNAVML-----PTGGIRLKELPESIVSLPGFA 219 +I + + L A P L+ + F Sbjct: 201 NQTPFITVRANNKFNNLDNDKMTEYQEILEAEGFSVAPSPLSPFALRVTKGNPAHSSLFM 260 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276 G +QD SA + V+ +VLD CAAPGGKT Q+ V A D+++ +L Sbjct: 261 NGEITIQDESALLAVEALNPKPGETVLDACAAPGGKTVQIAEAVGRTGHVIACDIAENKL 320 Query: 277 EKLRCNLDRLHL-YAEDIIEMDAF--------DYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++ N+DR+ + +I+ DA + FD +LVDAPCS G RR PD Sbjct: 321 PLIQENVDRMQVADHVEILHQDATALLDRFGENGSEPTSFDKILVDAPCSGVGLFRRKPD 380 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + D+ Q ++ Q + +K GG++ +S C++ ++++E+VV+ +L P Sbjct: 381 TKYHKTLQDLDALHDIQVTIMNQALPLLKKGGVITYSTCTITREENEDVVKAILDQHPD- 439 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + +W+ ++ ++ +G I I P DGFF + + Sbjct: 440 --LTLKSFKHWRD-NLDQSIGADGTIEILPHTYMS--------DGFFIASFEK 481 >gi|239502749|ref|ZP_04662059.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB900] Length = 434 Score = 224 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 208/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + T + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQTRACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWTPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMTNFFTEHTDAKEVK---------IETDWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QAYGRQLLPEAQSG--------DGFYYCKIQKIA 434 >gi|330500985|ref|YP_004377854.1| sun protein [Pseudomonas mendocina NK-01] gi|328915271|gb|AEB56102.1| sun protein [Pseudomonas mendocina NK-01] Length = 437 Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 114/443 (25%), Positives = 186/443 (41%), Gaps = 42/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + D+ L + + R+ PR+ + D +L Sbjct: 14 VLSGKASLGSSLP-----PQLDKVEHHDRALAQDLAFGAARWQPRLQLLADKLLEKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 ++ LL + + Q+L+ + ++A + V A K+ L+N++LRR RE Sbjct: 69 ADKDVEALLVIGLYQLLHSRIPEHAAIGETVGCAGALKKP-WAKGLLNAVLRRAQREHEA 127 Query: 138 LLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 L + + P W ++ L+ + E AI A + + L V + + Sbjct: 128 LFAELDRDPVLHTAHPRWLQKTLKAHWP-EHWQAICAANNAHPPLILRVNRRHGSRDAYL 186 Query: 191 HKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 +L P + +LPGF EG VQD +A + L Sbjct: 187 EELRNAGFAAEPCTFSRDGVRLLQPCDVTALPGFKEGRVSVQDEAAQLAADLLELTPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299 VLD CAAPGGKT L+ +V A+D+ +RL ++R NL+RL L A I D Sbjct: 247 VLDACAAPGGKTCHLLEVEPGLSQVVAVDLEAKRLARVRENLERLQLEATLIAADGRDTA 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + + F +L+DAPCS+TG IRRHPD+ TR +DI A Q +LL + GG Sbjct: 307 AWWDGQPFQRILLDAPCSATGVIRRHPDIKLTRKPEDIPALAQLQGELLDALWPTLAQGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 I++++ CS+ ++ E + L + E ++ EG + P Sbjct: 367 ILLYATCSVLPTENSETIAAFLARTVDARE-----------------IAIEGDFGLQPAH 409 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 ++ G DGF+ L + Sbjct: 410 GRQLLPQLDGHDGFYYAKLIKTA 432 >gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162] gi|296028399|gb|ADG79169.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162] Length = 452 Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 94/465 (20%), Positives = 161/465 (34%), Gaps = 45/465 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L+ V + +L + L+ RD + R +DA Sbjct: 4 PARRAALETLAAVRERGAYANLVLPGLLRQAR---LTGRDAAFATELTYGACRAQGLLDA 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ S+ + LR+ V Q+L V +A VD VE K R N Sbjct: 61 VIEDASGRSVDEIDGPVLDALRLGVYQLLRTRVGAHAAVDETVEAVKASSG-RGAGGFAN 119 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++LR+VS+ + +A P W + + ++ Sbjct: 120 AVLRKVSKADEDAWVAKLAPSAADDLVGHLAMQYAHPRWIADAFWESLRANGIRSMGQLQ 179 Query: 173 I------SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + + L + + A + + +L +G+ Sbjct: 180 ALLAEDDARPPVHLVARPGEISADELALIVGGETGRLSPYAVYLPGGDPGALEPVRDGLA 239 Query: 224 WVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLE 277 VQD + + + LDLCA PGGK A L + A +D + Sbjct: 240 GVQDEGSQLIARALTIAPVEGEDGGRWLDLCAGPGGKAALLGSLASIEGARVDAVEPAEH 299 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + ++ D + +D VLVDAPCS G +RR P+ W + DI Sbjct: 300 RAELVRTITKGLPVEVHVTDGRSSGLEPGYDRVLVDAPCSGLGALRRRPEARWRKQPADI 359 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-SA 396 QR+LL +PGG+V+++ CS ++ VV + L P++ Sbjct: 360 ADLTVLQRELLTAAAGLTRPGGVVLYATCSPHVAETIGVVAD--QRLLTDAGLEPIDTRP 417 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D+ + P +++ P + G D F A R+L Sbjct: 418 LVPATDLPLGDGPH--VQLWPHL--------HGTDAMFFQAFRKL 452 >gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 410 Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 58/438 (13%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88 +D +L +++D+ L +V+ LR+ ID ++FV + + +LRV Sbjct: 1 MDSLMEKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVK--DRRILNILRV 58 Query: 89 SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE---------- 137 + ++L+L+ + +YA V+ A E A + + H VN+ILR + R K + Sbjct: 59 ATYELLFLEKIPEYATVNEACEIASKI--SPHLKAFVNAILRNIIRNKNQIEESLERIKD 116 Query: 138 --LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHK 192 ++ P + + LE YG E+ L I + + + + D+ T + Sbjct: 117 VDYKSYVSIKLSYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVNTLTQE 176 Query: 193 LNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSV 245 L + L +I + EG ++ QD ++S+ V Sbjct: 177 LEKNGFKYEINSHNNEIIHVLKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKV 236 Query: 246 LDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 +DLCAAPGGK V V A D+++ +L+ LR N+ RL + + DA + P Sbjct: 237 IDLCAAPGGKTFNCAEVIDGFVVACDINEHKLDVLRENILRLGFDNIIVAKSDAEVFNPD 296 Query: 305 K--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD V+ D PC+ G IR+ PD+ W + DI Q ++L ++K GG++ Sbjct: 297 FAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNAAGYLKKGGLLF 356 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+L ++++EE V K L LV I I PD + Sbjct: 357 YSTCTLSRKENEETVLKFLDKH-RDFSLVSQ-------------------ITIFPDEFK- 395 Query: 423 IDGVSSGMDGFFAVALRR 440 DGFF LR+ Sbjct: 396 -------CDGFFIAKLRK 406 >gi|260553856|ref|ZP_05826124.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] gi|260404976|gb|EEW98478.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. RUH2624] Length = 434 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETEDFQQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + L + I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACTLSDAGIILEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWTPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + E+ I+ + Sbjct: 358 EHMWQQLKVGGSLLYITCSILKAENEQQMISFFAKHTDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QAHGRQLLPEAQSG--------DGFYYCKIQKIA 434 >gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1] gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1] Length = 445 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 110/463 (23%), Positives = 201/463 (43%), Gaps = 47/463 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +G R ++ +L+ R + L ++ L+ +++ +R +VN T+RFL Sbjct: 1 MLTGWKQREIAVKVLNAFERDKK-----LREHL-EALTAALTPQERAFLRELVNGTVRFL 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ L +K +++ LR+ Q+ + V YA ++ VE K+ + Sbjct: 55 RLLDFSVERASGRRLASQKPTVRNALRLLAYQLFFTGVPPYAALNETVEVVKQRLG-KGA 113 Query: 121 AKLVNSILRRVSREKIELL--------QRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN++ +++ +R+A + W +R E+FYG + + + Sbjct: 114 AGFVNAVGKKLLNFNYREEVESIKDPLERLATLHSFETWMVKRWESFYGPRELPHLLEGL 173 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVW 223 + + V + + L + + + ++ LPGF EG++ Sbjct: 174 NKVAPLFIRVNLIKTQPQELLNLLKSAGVEAEPHPFLKEMIRIKGRVNLPELPGFKEGLF 233 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 ++QD ++ + L +LD+ AAPGGKT + +GAK+ A+DV++ R E L+ Sbjct: 234 YIQDPASYLAAYLLQPKPGELILDVGAAPGGKTTAIASLTGNGAKIVAVDVNRERAELLK 293 Query: 281 CNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 NL +L + +++ D + FD +L+DAPCS+TG IRRHP+ W + Sbjct: 294 ENLRKLGVENTEVVITDIARDPNFLNRFRGKFDRILIDAPCSATGVIRRHPEGKWNKSLS 353 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + QR LL +KP G +++S CSL++++ EE R L Sbjct: 354 LIKHNQTIQRSLLKAAKELLKPTGTLLYSVCSLEREEGEEN-SAFARR------LGYTPL 406 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + EG +R+ P DGF+ L Sbjct: 407 PLTGLPEYLKEREQEGSLRLFPH--------KDNADGFYYQKL 441 >gi|194367355|ref|YP_002029965.1| sun protein [Stenotrophomonas maltophilia R551-3] gi|194350159|gb|ACF53282.1| sun protein [Stenotrophomonas maltophilia R551-3] Length = 443 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 126/456 (27%), Positives = 195/456 (42%), Gaps = 40/456 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G R++++ +L+ V + SL L A RD+ L+ A+ LR Sbjct: 13 APGAATRMLAARVLAQVFTRGRSLKAELAWALPKLA----DSRDRALLEALCFAVLRRRS 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DA L + L + L+ LL V AQ+ L++ +A + V+ A+ R A Sbjct: 69 TYDAALQGWMQKPLSARDADLRTLLMVGFAQLDVLELPAHAALSATVDAARALGRERQ-A 127 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN+ILRR RE PEW + +E + + AI A + P + L Sbjct: 128 GLVNAILRRAQREGFPEQPA---RDAFPEWLADAVERDWP-AQADAIFSASLQPAPLWLR 183 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + L + L +P ++ LPGFAEG VQD SA Sbjct: 184 ANRQQGGRDKALAALAEAGIAAEASTLSADALRLAVPVAVNQLPGFAEGALSVQDLSAQC 243 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHL-- 288 + VLD CAAPGGK+A L+ ++ ALD+ RRL + R R + Sbjct: 244 AADALAPASGARVLDACAAPGGKSAHLLERDPSLRLLALDIDARRLARARDTYIRTGVGE 303 Query: 289 --YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 D + FDA+L+DAPCS+TG IRR PDV++ R +DI Q + Sbjct: 304 HVQTLAADASDPGSWWDGVPFDAILLDAPCSATGVIRRQPDVMFHRRAEDIDALVGVQAR 363 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL S ++PGG+++++ CS+ + ++ + V+ L+ P V + + A Sbjct: 364 LLEACWSMLRPGGVLLYATCSILRAENIDQVRAFLKWHPDAV---------AQPLGDAFG 414 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG R + + DGFF L + Sbjct: 415 VDCEGVAR-------QRLPGENDADGFFYARLLKTA 443 >gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7] gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7] Length = 417 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 188/450 (41%), Gaps = 52/450 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L ++ L L+ S LS+ D+ L IV T++ ++ Sbjct: 2 ARTTALDVLIKYQNEQSYLNITLNDYLEKSL---LSRNDKDLATRIVYGTIQNKLYLEYQ 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + K + +L +S+ Q+++LD V DYAV+D AV AK+ + K VN Sbjct: 59 LAPYIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKK--RDNFAGKFVN 114 Query: 126 SILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +ILR R + RI+ + P W + L Y I +P Sbjct: 115 AILRNFLRNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRA 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 V T A L G L +I + F G+ +QD S+ + L Sbjct: 175 ARVNILKTTKAQLLTDENFEVGNLSPDGLLYRAGNIANTDYFKNGLVTIQDESSQLIAPL 234 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 VLD+C APG KT ++ + K+ A D+ + +++ + NL RL + ++ Sbjct: 235 LDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNVEL 294 Query: 294 IEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 DA K FD +L+DAPCS G ++R P++ + D+ + Q KLL Sbjct: 295 HVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYH-DSGAMDTIIPLQAKLLDN 353 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +K G +V+S C+++K+++E+++++ L P M + E Sbjct: 354 AYYLLKKNGKMVYSTCTINKKENEQMIKQFLDKYPD------------------MKIIEE 395 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P + + DGF+ L + Sbjct: 396 K--KILPYVYDS--------DGFYMCKLEK 415 >gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Cloacamonas acidaminovorans] gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Candidatus Cloacamonas acidaminovorans] Length = 438 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 190/457 (41%), Gaps = 42/457 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R + + V++ + LL D L +V ++ ++D Sbjct: 1 MNFRSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAG---EDPALFYNLVKGVIKLYLKLD 57 Query: 65 AVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 +L + ++ LL + + Q+LYL+ + DYA V+ VE AK N A Sbjct: 58 YILQQYVDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKT-LFNPQVAD 116 Query: 123 LVNSILRRVSREKIELLQR-----IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN++LR R IA P ++ + +G+E ++ Sbjct: 117 FVNAVLRNYLRNPEVSYPNEPALRIAYEHSFPPELIKQWLDLWGEENTEYLAMFFNENPE 176 Query: 178 IDLTVKFDIETWAHKLNA---------VMLPTGGIRLKELPES-IVSLPGFAEGVWWVQD 227 + + V T KL A + + ++ F+EG + VQD Sbjct: 177 LHIRVN-STATTPEKLKAYFAKRNIVITPSQASPMMFHTAQTAEVLEDVAFSEGYFSVQD 235 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 SA++ V+L SVLDL AAPGGK + + + +V A+D +++ L+ + Sbjct: 236 TSAALIVELLDPQKEESVLDLFAAPGGKCSYIAERMDNTGEVIAVDKIPSKMKLLKQAAN 295 Query: 285 RLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 RL L ++ DAF Y P F VLVD PCS G R D+ W +I + Sbjct: 296 RLQLTNIKMVVTDAFKYGPVAPAFHRVLVDVPCSGWGVFGRKSDLRWQAHQ-NIPELIKL 354 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q K L +FV PGG +V+S C+++ +++E+ + L+ + EL+P ++ + Sbjct: 355 QEKALDYAANFVTPGGFLVYSTCTMNPKENEDQISAFLKKNRN-FELIPADAF------I 407 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G+++ P MDG FA L+R Sbjct: 408 PERYTSAGYLKTIP--------FKHNMDGAFAAKLQR 436 >gi|308449899|ref|XP_003088114.1| hypothetical protein CRE_16572 [Caenorhabditis remanei] gi|308249515|gb|EFO93467.1| hypothetical protein CRE_16572 [Caenorhabditis remanei] Length = 435 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 117/455 (25%), Positives = 199/455 (43%), Gaps = 41/455 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +N R L V + SL +L+ ++S+RD+ L + LR Sbjct: 8 AKNLNLRAQVVKTLLAV-QNGQSLASVLNQHI-----NIISERDRGLYHELTLGCLRQWY 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A+ +L L +L+ L + + QIL + +A + V AK+ + Sbjct: 62 SLKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPAHAAISETVNAAKQ-LGFEPMS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN+ILRRVSRE E + +P W +RL+ + + + I + L Sbjct: 119 GLVNAILRRVSRETTEFQTALNNTHGLPSWLFKRLKKDWA-DLLPEICQNLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 V + + + L+ + L + +I LPGF EG + VQD A + Sbjct: 178 VNQRQISRDEYLDILDEEQIDARPCTLSDVGIVLEQTGNITHLPGFEEGGFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L L++ ++D CAAPGGK A + K+ ALD +RL ++ NL+RL L Sbjct: 238 CATLLPNLDDKVIIDACAAPGGKAAHILERFNPKKLIALDHDAKRLLRVSENLERLELNV 297 Query: 291 ---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +II DA + PK+L D +++DAPCS+ G +RRHPD+ R + DI + Q+++ Sbjct: 298 DATVEIITADATTWVPKELVDCIVLDAPCSAIGVLRRHPDIRLLRQSTDIQQVVDLQKQI 357 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K GG +++ CS+ K ++E+ + + E+ ID + Sbjct: 358 LKHMWQQLKVGGTLLYITCSILKVENEQQMVEFFAEHADAEEIK---------IDANWGI 408 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P + DGF+ +++ Sbjct: 409 EQIHGRQLLP--------EAHHGDGFYYCRIQKTA 435 >gi|297622450|ref|YP_003703884.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM 17093] gi|297163630|gb|ADI13341.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093] Length = 421 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 113/439 (25%), Positives = 179/439 (40%), Gaps = 32/439 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR + +L V + +L LS D+ V +V +LR +D Sbjct: 1 MTARETALSILRRV-HRGAFAAPVLSDALARG---GLSAADRGFVTHLVYGSLRLELALD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A L +L + + + LR+ + LY AVV+ V KR A LV Sbjct: 57 AQLRPLLQNP-AKLPPGVLDALRLGAFEALYSGTPRRAVVNEWVAIVKRRHG--RLAGLV 113 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N++LRRV ++ A +P W E +G++R A++ A ++ + L Sbjct: 114 NAVLRRVEARELPP----ATRYGLPAWLYAEWEARFGRQRAEAVAAAMVAGEPLWLLAYH 169 Query: 185 DIET---WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 T + P G + + L F G Q+ ++S+P +L Sbjct: 170 PQATHALLEEGCEVTLGPIEGTLAVRPSKPLGELAAFRRGWVQPQNPASSLPARLLEVAP 229 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDL + G K AQL GA VT++++ +LE+ NL RL L A + D Sbjct: 230 GERVLDLASGSGVKAAQLAALGADVTSVELHPNKLERAAANLRRLGLRARGV-VHDLRTP 288 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 VL+DAPC+ TGT+R HP++ + A QR+LL + PGG++ Sbjct: 289 PDLPPAPKVLLDAPCTGTGTLRGHPELRTRVTPEATRSLAALQRELLRSAAAVTAPGGLL 348 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ C+L + + E+ + L + P A D+ +PEG Sbjct: 349 VYAVCALTQAEGPEMARWFLETHPDF-------EAEPFLFDLPADNAPEG---------- 391 Query: 422 KIDGVSSGMDGFFAVALRR 440 G+DGFF +R Sbjct: 392 SSVLPLGGLDGFFIARFKR 410 >gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC 25745] gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC 25745] Length = 444 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 110/463 (23%), Positives = 194/463 (41%), Gaps = 42/463 (9%) Query: 1 MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + N AR ++ +L + + L+ + S+ + D+ L+ IV L+ Sbjct: 1 MTNQNNSARNLAVDILEKID-EGSFSNIQLNQDIKSSSLIDI---DKNLLTEIVYGVLQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D L + + LLR +V Q+ +LD V D+A+ + ++E AK + N Sbjct: 57 RLTLDFYLADYIRKP-EMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESIEIAK-LRGND 114 Query: 119 HFAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDA 171 K+V +LR R I + + W +++ G+E+ ++I + Sbjct: 115 GIRKMVTGVLRSYQRNGKPSFDSIKNPVEKLSTQYSVAPWIVDQMLYELGEEKCISILKS 174 Query: 172 CISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVW 223 P ++ + L T K+ SI + +G Sbjct: 175 INQPSHLAVRINRWNKTHADIIKDLEYEYTVTTSAIAKDGLRLSKGASISDTRSYIDGDL 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280 VQD SA + + VLD CAAPGGKT Q+ +VT D+ ++R++ ++ Sbjct: 235 TVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTGWDIYQKRVQLIQ 294 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 N R+HL DA + FD +LVDAPCS G +RR P++ + + D Sbjct: 295 DNAQRMHLENVKTEVQDAIAPREDLDESFDRILVDAPCSGIGLMRRKPEIRYLKSKKDSS 354 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q K+L +K GG++ +S C++ +++++E ++K L P +L + Sbjct: 355 DLHQLQLKILDNIAKMLKVGGVLTYSTCTILRKENQETIEKFLAIHPEFEQLKVETAKKI 414 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 K ++L+ I PD E DGFF L+++ Sbjct: 415 KQNRDELSLN------IYPDDFES--------DGFFIANLKKV 443 >gi|72161480|ref|YP_289137.1| RNA-binding Sun protein [Thermobifida fusca YX] gi|71915212|gb|AAZ55114.1| putative RNA-binding Sun protein [Thermobifida fusca YX] Length = 476 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 111/469 (23%), Positives = 181/469 (38%), Gaps = 47/469 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR V+ +L V + LL + + R ++ RD L + TLR Sbjct: 24 RPRDPARRVAYDVLYAVQTRDAYANLLLPVLLRE---RGITGRDAGLATELTYGTLRLQG 80 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DAVLD + SL + LLR+ Q+L +DV +A V V+ A+R + H A Sbjct: 81 SYDAVLDACVDRSLRSVDTEVLPLLRMGAHQLLSMDVPPHAAVSSTVDLARRIVGH-HRA 139 Query: 122 KLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKE----- 163 + VN++LR+V+ + +A P W + G E Sbjct: 140 RFVNAVLRKVTARDLTGWLSVLAPDRKTDPVGHLAITHSHPRWVVQAFAEALGDETSSGL 199 Query: 164 -RVLAISDACISPLYIDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSLPGFAE 220 + A + L K T ++ AV L + Sbjct: 200 KETERLLTAHNERPRVTLLAKPGRATVTDLVDEGAVAARYSPYGAVLPEGDPGMLRLVRQ 259 Query: 221 GVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVS 272 G VQD ++ ++ + + LD+CA PGGK A + G ++ A +V Sbjct: 260 GRAVVQDEASQLVALALSRVPVSGPDQQWLDMCAGPGGKAALMAGLVGERGGRLLAAEVQ 319 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R + + R + +I D +FD VLVDAPC+ G +RR P+ W Sbjct: 320 PARAGLVARAVHRSLGNSARVIVADSTQPPWRDGIFDRVLVDAPCTGLGALRRRPESRWR 379 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 R +++ + QR LL + + V+PGG+V + CS ++ VV VL +L+ Sbjct: 380 RTPENLAELVPLQRALLNRALDAVRPGGVVGYVTCSPHLAETRGVVTDVLAGR-DDADLL 438 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + D+A + +++ P G D F LR+ Sbjct: 439 NAARHLPEVPDVA----ADRFVQFWPH--------RHGTDAMFLALLRK 475 >gi|325697709|gb|EGD39594.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160] Length = 438 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 119/451 (26%), Positives = 192/451 (42%), Gaps = 34/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S L+Q D+ LV +V T+ ++ Sbjct: 8 ARWQALEVLEEVFEEGAYSNIALNRALSQS---SLNQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L ++ + L LL +S+ Q+LYLD + +AVV AVE AK R + + FA + Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAVVHEAVEIAKIRKRGSEKFANAL 123 Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 + R +R + +P W + L YG+ER LAI + S I Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKASI 183 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T +L A L + F G +QD S+ + Sbjct: 184 RVTDMSRKAELRQRLGAEDSLLSPSALFKKQGHFAGHQLFESGAITIQDESSQLVAPTLD 243 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L + Sbjct: 244 IEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + +G Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP++ E DGFF R++ + Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438 >gi|192360951|ref|YP_001984033.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio japonicus Ueda107] gi|190687116|gb|ACE84794.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio japonicus Ueda107] Length = 432 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 119/453 (26%), Positives = 208/453 (45%), Gaps = 41/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 + R ++ +L+ ++R++ SL+ LL ++++D+ L++ + R+ P++ Sbjct: 2 IPVRAAATQVLAQILRQQGSLSSLLPAMSVK-----IAEQDRPLLQQLCFGVCRYYPQLQ 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA---KRDKENRHFA 121 A +L L K +Q LL + + Q+++ + D+A + VE K+ + Sbjct: 57 AYTSLLLDKPLRAKDSDVQALLLLGLYQLIHTRIPDHAAIGETVEVTRDIKKAWATKLVN 116 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 ++ R +L A S P+W + L + ++ ++ A L Sbjct: 117 GVLRQFQRDQQTLGEKLASDRAFSSNHPDWLEGMLRKSWP-QQTDSLLAANNEHPPFTLR 175 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + +L A+ + G SLPGFA+G+ VQD +A + Sbjct: 176 LNTRHMSRDDYLAQLRALDIAAGATPFSPYGITLVQACDPRSLPGFAQGLISVQDEAAQL 235 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L L VLD C APGGKT I KVTA+DV +RRL+++R NL RL + A Sbjct: 236 SGDLLQLAPGLRVLDACCAPGGKTGHLLEIEPRMKVTAMDVEERRLQRVRDNLGRLGVTA 295 Query: 291 EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 DI D + + +D +L+DAPCS+TG IRRHPD+ R ++I + A Q +L Sbjct: 296 -DIRCGDGTRPEAWWDGEPYDRILLDAPCSATGIIRRHPDIKVLRTPEEIARLAQLQGQL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGGI++++ CS+ +++ VV+ ++ P A ++D+ L Sbjct: 355 LDSLWPLLKPGGILLYATCSVMPRENTRVVEAFIQRQP---------EARCDTLDVPWGL 405 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P G DGF+ LR+ Sbjct: 406 LQPCGRQLLPQ--------PEGHDGFYYARLRK 430 >gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma proteobacterium HTCC2148] gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma proteobacterium HTCC2148] Length = 433 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 121/453 (26%), Positives = 205/453 (45%), Gaps = 43/453 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ++ R ++ ++ V+ SL L A ++ RD+ L++ + TLR PR++ Sbjct: 3 LDTRAAAARIVGDVL-SGKSLNQTLP-----PALEKVAPRDKGLLQQLCYGTLRQAPRLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+L+ +L L K + LL + Q+ + D+A V V K K+ L Sbjct: 57 ALLNQLLDKPLREKDRDVHGLLLCGLYQLEDTRIPDHAAVSATVAATKALKKP-WAKGLS 115 Query: 125 NSILRRVSREKIE--LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 N++LRR RE+ P+W + + + E+ AI DA + + L + Sbjct: 116 NAVLRRFLRERDSLLTKLPEGAGHAHPQWLFDIINEQWP-EQANAIIDANNAQPPMTLRI 174 Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + + +LNA + L ++ LPGF G VQD +A + Sbjct: 175 NARRGNRADYLLRLNAAGIAAKEGDLSPQAIYLESARDVLELPGFETGDASVQDEAAQMA 234 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA 290 L VLD CAAPGGK+ ++ ++TA+D+ +RLE+++ NL+RL L A Sbjct: 235 ALLLAAQPGERVLDACAAPGGKSCHILELQPALGELTAMDLDPQRLERVQQNLERLGLQA 294 Query: 291 EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 I D + P + FD VLVDAPCS++G IRRHPDV R +DI Q + Sbjct: 295 SLI-AGDGANPPPVLAAQSFDKVLVDAPCSASGVIRRHPDVKSLRRQNDIASLGAQQTAI 353 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +KPGG ++++ CS+ ++ VV L+++ + + P ++ + Sbjct: 354 LQGLWPLLKPGGRLLYATCSILDGENNSVVNSFLKATDDAILVQP---------ELTWGV 404 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ P++ SG DG F + + Sbjct: 405 TAGVGRQLLPNI--------SGPDGLFYALIEK 429 >gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514] gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514] Length = 444 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 105/430 (24%), Positives = 187/430 (43%), Gaps = 31/430 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L+ + + LL++E + LS D+ L + +V +R+ ++ Sbjct: 14 KPRQIAVRVLTERLSQEEYTENLLEIELSRAR---LSAPDRGLCQELVYGIVRWQETLNW 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE-------N 117 ++D + R+K +Q LL++ + Q+ +LD + ++A V VE AK N Sbjct: 71 LIDR--KTEGRRQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKELGFVAQSGFVN 128 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + + + + PEW +R YG E + + +P Sbjct: 129 AVLRGYLRERVETEKLLEEVKIAQPQIGYSHPEWVYQRWLERYGAEHTAKLMEWNNTPAR 188 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPE----------SIVSLPGFAEGVWW 224 + D + + + + + + L F +G ++ Sbjct: 189 TYARINTLKADAAKVTAQWETEGVKFIPRQYDWIEDGLIFELESHPPLAGLKSFKDGFFY 248 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 +QD S + V+ SVLDLCAAPGGKT + + ++ A D+S RL LR Sbjct: 249 IQDPSTLLSVRELDVKAAHSVLDLCAAPGGKTTMIAQQMQNRGQIVAQDISDDRLALLRE 308 Query: 282 NLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 N RL + I +A P + FD VL+DAPCS+TG +RR D+ W +++ + Sbjct: 309 NYVRLGVTCVVASIAPNAVIANPAQRFDRVLIDAPCSNTGVMRRRVDLRWRIQPEEVERL 368 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +LL + +KP GI+V+S CSL+ +++ +VVQ+ L +P EL Sbjct: 369 RETQLELLRRAAPRLKPNGIMVYSTCSLEPEENSQVVQQFLSENP-DFELKSERQLTPFG 427 Query: 401 IDMAMALSPE 410 D+ A + + Sbjct: 428 NDVDGAYTAK 437 >gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17] gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17] Length = 432 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 116/453 (25%), Positives = 197/453 (43%), Gaps = 37/453 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ R +++ +L V + SL+ L L Q ++A+ T R+ Sbjct: 1 MQPHAPLRAIAAEVLLSVE-QGQSLSQCLPPSLLRLPLNLRPQ-----LQALCYGTCRWF 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R+D L + L + L+ V++ Q+ + A YAV++ VE + + H Sbjct: 55 HRLDDELQGRMKKPLKNHDRVVHHLMLVALFQLRFSQQATYAVLNETVEACRAMDKP-HL 113 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-ID 179 LVN +LR RE + P W E+L + + + + + Sbjct: 114 TGLVNGVLRSAEREGAPAAAKDTSRYSHPGWMIEKLRHNWPDDWQAIVDANNTQAPMTLR 173 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + +F + + L + R P + +LP FAEG VQD +A + Sbjct: 174 VNALRFSRDEYLQLLLDAGIDASATRFAPHGIQLARPVPVDALPWFAEGAVSVQDEAAQL 233 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 L +LD CAAPGGKT + A+V A+D S +RL +++ NLDRL L+ Sbjct: 234 CTTLLDLAPGQRILDACAAPGGKTCAILESCPQAAEVVAIDESAQRLPRVQENLDRLDLH 293 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A D + + FD +L+D PCS++G IRRHPD+ R D+V A Q L Sbjct: 294 ASLLQADAADIDQWWDGQPFDRILLDLPCSASGVIRRHPDIKLLRRESDVVPLAQIQLGL 353 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L+ ++PGG +V++ CS+ Q++ +VQ+ + EL+ + + + +++ Sbjct: 354 LVAMWRILQPGGRLVYATCSVFPQENHRIVQRFCKQ-QTDSELITIEALWGRTMPAGR-- 410 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P ++ G DGFF L + Sbjct: 411 ------QLLP--------LNDGHDGFFYAVLEK 429 >gi|84500523|ref|ZP_00998772.1| ribosomal RNA small subunit methyltransferase B, putative [Oceanicola batsensis HTCC2597] gi|84391476|gb|EAQ03808.1| ribosomal RNA small subunit methyltransferase B, putative [Oceanicola batsensis HTCC2597] Length = 465 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 137/433 (31%), Positives = 211/433 (48%), Gaps = 20/433 (4%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+S V+ ++ +L LL F D+ + + TLR L R+D +L Sbjct: 49 AAHQLVSSVIDEQKTLADLLGRTGPLGRF---DPADRARAQRLATETLRHLGRLDTLLAE 105 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L P + LR++ ++ + A + VV+ AV + + N++LR Sbjct: 106 HLSHMPP---LPVLITLRIATYELATSE-AAHGVVNSAVTHVAAMPRHNRLKGMTNAVLR 161 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD--IE 187 +V+ + + +W + L +G+ V+A+ A +DLT + Sbjct: 162 KVAATAPSRWPDLPPSPLP-DWLRAPLVMAWGEAGVVAMEAAHARGAPLDLTPRDPSAAA 220 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 A +L A +LPTG +R+ + + L GF G WWVQDA+A+IP +L G VLD Sbjct: 221 DMAQRLEARVLPTGNLRIDRPVQ-VSRLEGFDAGEWWVQDAAAAIPARLLGARPGEKVLD 279 Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF 307 +CAAPGGKT QL +GA+VTALD+S R E++ NL R L AE ++ + + Sbjct: 280 MCAAPGGKTLQLAAAGAEVTALDISAARTERITENLARTGLGAEIVVA--DALDFDRTGW 337 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DA+L+DAPCS+TGTIRRHPD+ +D I Q L+ +S ++PGG +VF CS Sbjct: 338 DAILLDAPCSATGTIRRHPDLPHAQDGSRIGDLIALQSGLIDHALSLLRPGGRLVFCTCS 397 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L + E V + L P L + A ++ EG +R+ PD + Sbjct: 398 LIPDEGEVQVAEALARHPG---LSTDPADLDLPGLEADWITQEGGLRLRPDHWAGL---- 450 Query: 428 SGMDGFFAVALRR 440 GMDGF+ LR+ Sbjct: 451 GGMDGFYIAMLRK 463 >gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402] gi|167703201|gb|EDS17780.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402] Length = 417 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 188/450 (41%), Gaps = 52/450 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L ++ L L+ S LS+ D+ L IV T++ ++ Sbjct: 2 ARTTALDVLIKYQNEQSYLNITLNDYLEKSL---LSRNDKDLATRIVYGTIQNKLYLEYQ 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + K + +L +S+ Q+++LD V DYAV+D AV AK+ + K VN Sbjct: 59 LAPYIQG--KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKK--RDNFAGKFVN 114 Query: 126 SILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +ILR R + RI+ + P W + L Y I +P Sbjct: 115 AILRNFLRNGKCEIDEKDELKRISIETSHPLWIVKMLSKQYDLNIAKKICQHDNTPPTRA 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 V T A L G L +I + F G+ +QD S+ + L Sbjct: 175 ARVNILKTTKAQLLTDENFEAGNLSPDGLLYRAGNIANTDYFKNGLVTIQDESSQLIAPL 234 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 VLD+C APG KT ++ + K+ A D+ + +++ + NL RL + ++ Sbjct: 235 LDPQPTDLVLDMCCAPGSKTTHLAAIMNNQGKIIAYDLFEHKIKLVEANLKRLGVNNVEL 294 Query: 294 IEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 DA K FD +L+DAPCS G ++R P++ + D+ + Q KLL Sbjct: 295 HVGDATLLKEKYSEESFDKILLDAPCSGLGVMKRKPEIKYH-DSGAMDTIIPLQAKLLDN 353 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +K G +V+S C+++K+++E+++++ L P M + E Sbjct: 354 AYYLLKKNGKMVYSTCTINKKENEQMIKQFLDKYPD------------------MKIIEE 395 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P + + DGF+ L + Sbjct: 396 K--KILPYVYDS--------DGFYMCKLEK 415 >gi|212211692|ref|YP_002302628.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212] gi|212010102|gb|ACJ17483.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212] Length = 430 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 213/456 (46%), Gaps = 48/456 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L++ V++K+ SLT LL ++ +Q L++ + TLR+ ++ Sbjct: 1 MNTRATAAILVNQVVQKKRSLTALLSA----------NKNNQSLIQELCYGTLRWYFKLK 50 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + +L + L K + + L+ Q+ YL++ + +V+ V A+ K+ L+ Sbjct: 51 FIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109 Query: 125 NSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N +LRR EK EL P WF + ++ + + I++ P+ + Sbjct: 110 NKLLRRFIAEKDELFTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLR 169 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + K E + L+ + + P S+ LPGF EG ++QDA+ Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289 L NN +VLD CAAPG KT+ ++ + A+D +K+RL +++ N+ RL L Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289 Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 E + + + +LFD +L+DAPCS+TG IRRHPD+ R DI + + Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +LL + +K GG +++S CS+ ++E+V+++ L + VEL P N Sbjct: 350 LQLLNALWAVLKSGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +++ + DGF+ L + Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428 >gi|170782379|ref|YP_001710712.1| putative Sun-family protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156948|emb|CAQ02117.1| conserved hypothetical Sun-family protein [Clavibacter michiganensis subsp. sepedonicus] Length = 488 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 107/468 (22%), Positives = 171/468 (36%), Gaps = 47/468 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ ++S V LL + +A LS +D L + TLR D Sbjct: 34 PARRVAYEVVSAVRESDAYANLLLPVRIRRAA---LSAQDAALATELTYGTLRMSGYYDR 90 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ + + +LR+SV Q+L + VA +A V+ V+ A+ +R VN Sbjct: 91 VIELAAGRPVTAIDAPILDVLRLSVHQLLSMRVATHAAVNEGVDMARAV-GSRSATGFVN 149 Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE----RVLAIS 169 +LR ++R + + ++ A P W L +E + + Sbjct: 150 GVLRTITRSEPDEWRQRVLDSAASDDERLALEHSHPLWVLRALRQALAREGRDDELEDLL 209 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 A + + L + T + + + PG A+G VQD Sbjct: 210 RADNAAPAVSLVALPGLATV-EETGEQPAAFSPLGAYLEGGDPMDAPGVADGRVRVQDEG 268 Query: 230 ASIPVQLFG----TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + LDLCA PGGK A L + AL ++ L R L R Sbjct: 269 SQLAALALSRARAVTPGERWLDLCAGPGGKAALLAAEAGRSGAL-LTANELVPARAGLVR 327 Query: 286 LHLYAED----IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 L A + E+D + FD +L+DAPCS G +RR P+ W + D+ Sbjct: 328 DALRAVPGDTEVWELDGTTVGEEHPGAFDRILLDAPCSGLGALRRRPEARWRKTPRDVAG 387 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI------PVELVPL 393 Q L+ I + PGGI+ + CS ++ +VQ L+ P L + Sbjct: 388 LGALQAGLIDSAIGALAPGGILAYVTCSPHLAETRAIVQAALQRHPDVSARDTRAVLQEV 447 Query: 394 NSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S G +++ P G D F L R Sbjct: 448 ADGDLELPAADADASTHGSSVQLWPH--------RHGTDAMFIALLTR 487 >gi|323519897|gb|ADX94278.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii TCDC-AB0715] Length = 434 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + + +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKLISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETEDFEQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQAAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQSRACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGK A A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKMAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWTPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + P E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434 >gi|262280615|ref|ZP_06058399.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] gi|262258393|gb|EEY77127.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter calcoaceticus RUH2202] Length = 434 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE E Q + +P W +R++ +G E+ ++ + + L Sbjct: 119 GIVNAILRRATRETDEFQQGLQQAHGLPSWLYKRVKKDWG-EQTESLCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 V + + KL + + L E I LPGF EG + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSSEIKARACILSEAGIVLEQSVQITQLPGFEEGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L LNN +V+D CAAPGGKTA AK+ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAKLIAIDQDSNRLVRVTENLNRLALDQ 297 Query: 291 ED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 THTEILAADATQWVPAQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + E+ I+ + Sbjct: 358 QHMWQQLKAGGTLLYITCSVLKAENEQQMIDFFAEHTDAKEIK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ ++++ Sbjct: 409 QIHGRQLLPQAQSG--------DGFYYCKIQKIA 434 >gi|325695223|gb|EGD37124.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150] Length = 438 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 119/451 (26%), Positives = 191/451 (42%), Gaps = 34/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V + L+ S L+Q D+ LV +V T+ ++ Sbjct: 8 ARWQALEVLEEVFEEGAYSNIALNRALSQS---SLNQADKGLVTELVYGTVARKITLEWY 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLV 124 L ++ + L LL +S+ Q+LYLD + +AVV AVE AK R + + FA + Sbjct: 65 LSHLIE-DRDKLDNWLYILLMLSLYQMLYLDKIPQHAVVHEAVEIAKIRKRGSEKFANAL 123 Query: 125 NSILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYI 178 + R +R + +P W + L YG+ER LAI + S I Sbjct: 124 LRRIEREGVADFETIKRKNKRYSIQYSLPVWLVKDLIEEYGEERALAIFASLFVRSKASI 183 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T L A L + F G +QD S+ + Sbjct: 184 RVTDMSRKAELRQLLGAEDSLLSPSALFKKQGHFAGHQLFESGAITIQDESSQLVAPTLD 243 Query: 239 TLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIE 295 +LD C+APGGKT + ++ +TALD+ +LE + N +RL L + Sbjct: 244 IEGEEQILDACSAPGGKTVHMASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKK 303 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +DA FD +LVDAPCS G IRR PD+ + ++ D Q +L Sbjct: 304 LDATKVFETFGPDAFDKILVDAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVC 363 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++ GGI+ +S C++ +++ EVV+K L S P +++ + + +G Sbjct: 364 QSLRKGGIIAYSTCTIMAKENFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGC 415 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I ITP++ E DGFF R++ + Sbjct: 416 ILITPELYES--------DGFFISQFRKISE 438 >gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 437 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 100/450 (22%), Positives = 185/450 (41%), Gaps = 39/450 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L ++ + +S L D +++D+ ++ + LR LP + Sbjct: 11 NLRADAARVLFQILEQGMSARECLPNAQQDH-----NEKDKAWLQEMTYGVLRQLPLLQH 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L +L L + ++ L+ + Q+ + V+ +A V V A LVN Sbjct: 66 WLRLLLDKPLKKNVKIVEHLIMLGFYQLAFSRVSTHAAVSECVN-ACAPLNAVATKGLVN 124 Query: 126 SILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTV 182 ++LR R+++ +S P+W ++L Y ++ + + ++ + Sbjct: 125 AVLRNFIRQEMANELPDNEQILSGQPKWLYKKLLTAYPEKHTPILEAMQVKAPIWLRVNQ 184 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQ 235 +L + ++ I +LPG+ EG + VQD +A + Sbjct: 185 NQKSTDEYCRLLDENDIFYERQDEQPQGLILSKGCDITTLPGYDEGWFAVQDGAAQLAAN 244 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA-- 290 L + N +LD CAAPGGKT ++ A+D+ RL+++ NL RL A Sbjct: 245 LLNSQPNERILDCCAAPGGKTCHILELEPKIASCVAMDIDPSRLQRIEENLTRLGHQASL 304 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + FD +L+DAPCS+TG IRRHPD+ W R + DI Q K++ Sbjct: 305 ICGDASEPKAWWDGEQFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDTLVALQAKIIDA 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +KPGG ++++ CS+ +++ + L + + + Sbjct: 365 IWPLLKPGGTMLYATCSILPAENQLQISAFLERTADAA----------LDPEFNNDAIDK 414 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P MDGF+ L + Sbjct: 415 PGRQILPG--------EKHMDGFYYARLLK 436 >gi|319442113|ref|ZP_07991269.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium variabile DSM 44702] Length = 525 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 102/475 (21%), Positives = 159/475 (33%), Gaps = 54/475 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 SG R + +L V L + RD + TLR Sbjct: 64 SGDRVRDIVFEVLRKVSTDAAFANIALPAALREQKIHG---RDAAFATELTYGTLRMQGL 120 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DAV+ + + + LR+ QIL V D+A VD VE K + + Sbjct: 121 LDAVIAEAAGRPVDKIDAVVLDALRLGAYQILRTRVDDHAAVDTTVELVKAN-GEAKASG 179 Query: 123 LVNSILRRVSREKIELLQRI------------AGISIIPEWFKERLENF------YGKER 164 N +LR ++R E + A + P W E Sbjct: 180 FTNGVLRTLTRTPAETWESRVTAKVTDPVARLALQTSHPTWIAEAFNAALGGTPDAPATE 239 Query: 165 VLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + A + + L + E A + L +G Sbjct: 240 LADALAADDARPVVHLAARPGQMSGEELALVTGGDEGRWSPYAVYLPEGDPGDLDPVRDG 299 Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277 + VQD + ++ ++ LDLC+ PGGKTA L A V Sbjct: 300 LAGVQDEGSQLIALAMLRAEVADDHGRWLDLCSGPGGKTAFLASWAMGDRAT-VDAVEPA 358 Query: 278 KLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 R L R +I +D FD VLVDAPC+ G +RR Sbjct: 359 AHRAKLVRTATSGLPARVHEGDGRRLAEIRGLDMPVSPEGDGFDRVLVDAPCTGLGALRR 418 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P+ W + D+ + Q+ LL + +PGGIVV+S CS ++ +VV+ V + Sbjct: 419 RPEARWRKTPADVAELVPLQKDLLRSALKATRPGGIVVYSTCSPHPAETRDVVRAVADQT 478 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +E +A + + + L ++++ P G D F LR Sbjct: 479 GAVIEDA---TALFPDLVESGTLDSAPFVQLWPH--------RHGTDAMFFAMLR 522 >gi|312876959|ref|ZP_07736934.1| sun protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796274|gb|EFR12628.1| sun protein [Caldicellulosiruptor lactoaceticus 6A] Length = 406 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 108/425 (25%), Positives = 181/425 (42%), Gaps = 58/425 (13%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100 +++D+ L +V+ LR+ ID ++FV + + +LRV+ ++L+L+ + + Sbjct: 10 NEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVK--DRRILNILRVATYELLFLEKIPE 67 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE------------LLQRIAGISII 148 YA V A E A + + H VN+ILR + R K + ++ Sbjct: 68 YATVSEACEIASKI--SPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSYVSIKLSY 125 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI-- 203 P + + LE YG E+ L I + + + + D+ T +L Sbjct: 126 PRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVNTLTQELEKNGFKYEINSH 185 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGK-TA 257 + L +I + EG ++ QD ++S+ V+DLCAAPGGK Sbjct: 186 NNEIIHVLKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVIDLCAAPGGKTFN 245 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 V V A D+++ +L+ LR N+ RL + + DA + P FD V+ D P Sbjct: 246 CAEVIDGFVVACDINEHKLDVLRENILRLGFDNIIVAKSDAEVFNPDFAEKFDIVIADLP 305 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 C+ G IR+ PD+ W + DI K Q ++L ++K GG++ +S C+L ++++EE Sbjct: 306 CTGFGAIRKKPDIKWNKTQQDIQKLHELQVRILDNAAGYLKKGGLLFYSTCTLSRKENEE 365 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V K L LV + I PD + DGFF Sbjct: 366 TVLKFLDKH-RDFSLVSQTT-------------------IFPDEFK--------CDGFFI 397 Query: 436 VALRR 440 LR+ Sbjct: 398 AKLRK 402 >gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7] gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7] Length = 432 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 196/454 (43%), Gaps = 42/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+ R ++ L V+ SL+ + L+ RD+ +A+ TLR+ R++ Sbjct: 1 MSPRQITLKALKRVVINGASLSDV-----LPPLLAPLAPRDRAFAQALAFATLRWHHRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + K + ++ + + ++LYL DYA + AK +V Sbjct: 56 ALTGRLLSKPMRDKDRDVGLVIEMGLCELLYLRTPDYAAIQETAGLAKS-LGKPWATGVV 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRRV RE +L + A +P+W L + ++ A+ +A + + L Sbjct: 115 NAVLRRVQREGDALLADLDRDPALRLSLPDWLLGALRKAWPEDW-QALGEALNAQAPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V + E + +L + P + LPGF G+ VQDA+A Sbjct: 174 RVDLSRITREAYRVRLAEAGHDAEPHPVAASALVLAAPVDVNQLPGFDAGLVSVQDAAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + L + VLD CAAPGGKT + +TALDV RL ++ NL R Sbjct: 234 LAAPLLDCRPGMRVLDACAAPGGKTLHLLESVAGDLDLTALDVDAERLRRVEENLARAGR 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A + +D +L+DAPCS+TG IRRHPD+ R +DI + A Q Sbjct: 294 RARLVAGDGEHPAQWHEGGAYDRILLDAPCSATGVIRRHPDIKLLRKGEDIPRLAARQAA 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + PGG+++++ CSL +++ + V+ L++ E PL + +S Sbjct: 354 LLEALWPLLAPGGMLLYATCSLLPRENADQVRVFLQAH-GDAEESPLPEDFGRSTSPG-- 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I GMDGF+ L + Sbjct: 411 --------------RQILAGEQGMDGFYYARLIK 430 >gi|119385444|ref|YP_916500.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans PD1222] gi|119375211|gb|ABL70804.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222] Length = 535 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 135/440 (30%), Positives = 214/440 (48%), Gaps = 34/440 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 AR + LL+ V +L L + + LR R+D Sbjct: 125 ARSGALRLLAAVDD-GATLDEAGALTDRLAPAERARARRLALE--------VLRRADRVD 175 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD-KENRHFAKL 123 +L +L + ++LR++ ++L L A + V+ AV A+ ++ + A + Sbjct: 176 LLLAPMLARRPR---PEIMRILRLAAVEMLALGEAPHGAVNAAVALARASGRKGQAAAGM 232 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN++LR+++ + +P W + + +G++ AI A + +DLT K Sbjct: 233 VNAVLRKIAGAAEAWARLSPQK--MPFWLRAPVVAAWGEDAARAIEAAHEAGAVLDLTPK 290 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 LPTG RL + +LPG+AEG WWVQDA+A++ V++ Sbjct: 291 ------GADCPGEALPTGSHRLPAGT-RVSALPGYAEGDWWVQDAAAALAVRVLDPQPGE 343 Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 V DLCAAPGGKT QL +GA+VTA+D+S+ RL ++ NL R L A + DA D+ P Sbjct: 344 RVADLCAAPGGKTLQLAAAGAEVTAVDISELRLARVAENLARCGLQARLV-AADALDWRP 402 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + DAVL+DAPCS+TGTIRRHP++ RD + + Q +L+ + +KPGG +++ Sbjct: 403 DQPLDAVLLDAPCSATGTIRRHPELPRIRDGAGLAELTGLQARLIDHALDLLKPGGRLIY 462 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 + CSL + E+ + VL P V P ++P+G +R+ PD+ Sbjct: 463 ATCSLLPAEGEDQLAAVLARHPGLVVEPPRAPGV-----EPDWITPQGGLRLRPDLW--- 514 Query: 424 DGVSSGMDGFFAVALRRLIQ 443 GMDGFF LR+ + Sbjct: 515 -PERGGMDGFFIARLRKSAE 533 >gi|85375086|ref|YP_459148.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis HTCC2594] gi|84788169|gb|ABC64351.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis HTCC2594] Length = 415 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 150/440 (34%), Positives = 218/440 (49%), Gaps = 36/440 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G++AR + +L V+R+ +L S D+ L RAI N TLR+L Sbjct: 5 TGIHARRAALQMLDAVLRRGETLEQAEGAALRQVR----SAPDKALARAIANETLRWLTD 60 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 DA++D LP + +LR+ +AQ L L+ +AV+ + A Sbjct: 61 FDALIDSATKQRLPD-DAKARTVLRLMLAQWLRLETPPHAVIATGLPL---------LAG 110 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + V + R+ +P +ER +R I+ P +DLT+ Sbjct: 111 GPRRLAHGVFSTLTKKEVRLPAAPTLPVRVRERWG-----DRADEIAAGLAEPPPLDLTL 165 Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + ET WA++L A G +RL ++ +L GF EG WWVQD +ASIP +L G Sbjct: 166 RDAGETQHWANQLAADSYAPGHLRLPRGS-AVETLAGFREGAWWVQDLAASIPARLLGPG 224 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCAAPGGKT QL +G KVTALD+SKRRL L+ NL R +L A + DA Sbjct: 225 EGRHVLDLCAAPGGKTLQLAAAGWKVTALDISKRRLGLLKDNLTRTNLKASTVR-ADALA 283 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + PK FDA+L+DAPC++TGT RRHPDVL I + + Q LL + ++KPGG Sbjct: 284 WEPKHHFDAILLDAPCTATGTCRRHPDVLHRIGPRQIGEMSELQAALLGRAQGWLKPGGT 343 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL++++ + KV ++ + + S EGW+R P ML Sbjct: 344 LVYAVCSLEEEEGKVQAAKV---------VLTPEPVAPGELPSGLMPSDEGWVRTHPGML 394 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G+DGFF R+ Sbjct: 395 CT----QGGLDGFFIARWRK 410 >gi|262373879|ref|ZP_06067157.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter junii SH205] gi|262311632|gb|EEY92718.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter junii SH205] Length = 435 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 119/453 (26%), Positives = 199/453 (43%), Gaps = 40/453 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +N R L V + SLT +L+ ++S+RD+ L + LR Sbjct: 10 KNLNLRAQVIKTLLAV-QNGQSLTSVLNQHI-----NMVSERDRGLYHELTLGCLRQWFS 63 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + A+ +L L +L+ L + + QIL + +A + V AK+ + Sbjct: 64 LKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPVHAAISETVNAAKQ-LGFEPMSG 120 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN+ILRRVSRE E + +P W +R++ + E+ + A + L V Sbjct: 121 LVNAILRRVSRETDEFQIALNNTHGLPSWLFKRIKKDWP-EQSEHLCQALKQVAPLTLRV 179 Query: 183 ---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + + + L+ + L + +I LPGF EG + VQD A + Sbjct: 180 NERQVSRDEYLEILDEEQIDARPCMLSDVGIVLEQTGNITHLPGFEEGGFSVQDEHAQLC 239 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290 L L+ V+D CAAPGGKTA + K+ ALD +RL ++ N++RL L Sbjct: 240 ATLLPNLDGKVVVDACAAPGGKTAHILERFNPKKLIALDHDAKRLLRVSENIERLGLDQT 299 Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +II DA + + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 300 EVEIIAADATTWQTPEPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTVALQQQILR 359 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 Q +K GG +++ CS+ K ++E+ + P E+ I + Sbjct: 360 QMWQQLKVGGTLLYITCSILKVENEQQMVDFFADHPDAKEIK---------ISADWGIEQ 410 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ +++ Sbjct: 411 IHGRQLLPSNQLG--------DGFYYCHIQKQA 435 >gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894614|gb|EFG74350.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 461 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 110/457 (24%), Positives = 169/457 (36%), Gaps = 40/457 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V + L + R +S RD + T R +DA Sbjct: 20 PARAAAFEVLRAVSERDAYANLALPALLRE---RQISGRDAAFATELAYGTCRTRGLLDA 76 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ S L LLR+ Q+L V YA V VEQA + + A VN Sbjct: 77 VIGAAAGRSPDTIDPVLLDLLRLGTYQLLRTRVDSYAAVSTTVEQAG-IEFDSARAGFVN 135 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +LR V+ + A + P W + + G + A+ Sbjct: 136 GVLRAVAARDEKSWVEELAPDPSRDPVGHAAFVHAHPRWIAQAFADALGPAAGELDAVLA 195 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + A + + + L +GV VQD Sbjct: 196 SDDGRPQVHLAARPGVLTAAELAEAVGGTVGRYSPYAVYLPGGDPGRLAPVRDGVALVQD 255 Query: 228 ASAS---IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNL 283 + + L + LDLCA PGGKTA L GA A + + + + Sbjct: 256 EGSQLVARALTLVPVDDAGRWLDLCAGPGGKTALLAALGAGSGARVTAVEPAPRRADLVV 315 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A D++ +D + FD VLVDAPC+ G +RR P+ W R D+ A Sbjct: 316 ENTRGLAVDVLRVDGRQTGLEPAFDRVLVDAPCTGLGALRRRPEARWRRQPADVPALAKL 375 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+LL I+ +PGG+V+++ CS ++ VV LR P+ V + + Sbjct: 376 QRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHPVCA--VDTRPLFEPVDGL 433 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++++ P G D FA ALRR Sbjct: 434 GDGP----YVQLWPH--------RHGTDAMFAAALRR 458 >gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis AR01/DG] gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0411] gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG] gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0411] gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4244] Length = 459 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|260434429|ref|ZP_05788399.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 8109] gi|260412303|gb|EEX05599.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp. WH 8109] Length = 445 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 201/465 (43%), Gaps = 59/465 (12%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ R ++ +L V L+ + L D+ LV + +R + Sbjct: 11 GLLPRRLAWDVLQAV-AAGAYADVALERVLR---MQDLKPSDRGLVTELAYGAIRQRRTL 66 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 DA LD + ++ L+ LL V + Q+L + + D A V+ AVE AK K A Sbjct: 67 DAWLDRLGKVPAAKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAVELAKTSKGLARLAP 126 Query: 123 LVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 +VN +LR + +L ++A +P+WF + L + G E A++ AC Sbjct: 127 VVNGVLRAALRAREAGETLQSPNDLAAQLAQSQSLPDWFTQLLIEWRGAEGAAAVASACN 186 Query: 174 SPLYIDL----------TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 +DL V+ D+ ++ G+R+ + PG+AEG W Sbjct: 187 RVPDLDLRVNRLRSSPPQVQQDLAAAGISSEPIVGCPDGLRISGHSGDLRDWPGYAEGHW 246 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLR 280 VQD SA L +LD CAAPGGK L A++ A+D S RL+++ Sbjct: 247 CVQDCSAQWIAPLLDPKPGDRILDACAAPGGKATHLAELVGDQAEIWAVDRSAGRLKRVV 306 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 N RL L + + + DA + ++ F +L+DAPCS GT+ RHPD W Sbjct: 307 ANAARLGLASINALAADAANLLEQRPQWRESFQRILIDAPCSGLGTLARHPDARWRVTPQ 366 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + Q+ LL + + P G++V++ C++ ++++ +Q++L+ P Sbjct: 367 SVRGLLPQQQALLDGLLPLLAPQGVLVYATCTIHPDENQKQIQELLKRQP---------- 416 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 AL E ++ PD +SG DGF++ L+R Sbjct: 417 ----------ALRLEQESQLWPD-------QASGGDGFYSAVLQR 444 >gi|213158779|ref|YP_002321200.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB0057] gi|301345911|ref|ZP_07226652.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB056] gi|301596687|ref|ZP_07241695.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB059] gi|213057939|gb|ACJ42841.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii AB0057] Length = 434 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QTYGRQLLPEAQSG--------DGFYYCKIQKIA 434 >gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM 15897] gi|224525341|gb|EEF94446.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM 15897] Length = 439 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 99/450 (22%), Positives = 176/450 (39%), Gaps = 50/450 (11%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 M R + +L + L L+ + S ++ L+ +V T++ + Sbjct: 25 NMKERDTALDILIDYEKNESYLNITLNHTLT----QDFSPSERGLITTLVYGTIQNRLYL 80 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + L+ + + L + LL +S+ Q YLD DYA+V+ AVE K + N+ + Sbjct: 81 EYQLEPHIHTRLK---VVEKMLLLMSLYQHFYLDTPDYAIVNEAVEIIKE-RRNKRAGGM 136 Query: 124 VNSILRRVSREKI-----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +N+IL +E + +R++ + P W + YGKE I A Sbjct: 137 INAILHSCFKETRSLDDLDHDERLSISTSHPLWMVKMFNAQYGKETTEKILHADNEVPLK 196 Query: 179 D---LTVKFDIETWAHKLNA-VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 T K E + K + +I F EG+ +QD S+ + Sbjct: 197 SGRMNTYKMSREEFLKKYPEFTPGYLSPDSVLLKEGNIAHTEAFKEGLVTIQDESSQMVA 256 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 +L VLD+C APG KT L + + + D+ + + + N RL L Sbjct: 257 RLLNPGEEDVVLDMCGAPGSKTTHLGILMNNKGLIDVYDLYPHKAKLIEDNAKRLGLSNI 316 Query: 292 DIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D+ D K + +L+D PCS G + R P++ + D+D + + Q KLL Sbjct: 317 HVHTGDSTDLSLFDKQYTKILLDGPCSGLGVLSRKPEIKYH-DSDAMDEIILIQAKLLEN 375 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 S GG +V+S C+++K+++E+ ++K ++ P + Sbjct: 376 AYSLCIKGGNIVYSTCTINKKENEKQIEKFIKKHPDMHVVEE------------------ 417 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I DGF+ L + Sbjct: 418 ----------RTILPFEYHSDGFYMCLLEK 437 >gi|109896353|ref|YP_659608.1| sun protein [Pseudoalteromonas atlantica T6c] gi|109698634|gb|ABG38554.1| 16S rRNA m(5)C-967 methyltransferase [Pseudoalteromonas atlantica T6c] Length = 437 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 108/450 (24%), Positives = 193/450 (42%), Gaps = 39/450 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L ++ + +S L D +++D+ ++ + LR LP + Sbjct: 11 NLRADAARVLFQILEQGMSARECLPAAQQDH-----NEKDKAWLQEMTYGVLRQLPLLQH 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L +L L + ++ L+ + Q+ + V+ +A V V A LVN Sbjct: 66 WLRLLLDKPLKKNVKVVEHLIMLGFYQLAFSRVSTHAAVSECVN-ACAPLNAIATKGLVN 124 Query: 126 SILRRVSREKIELL--QRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTV 182 ++LR R+ +S P+WF ++L + Y + + ++ + Sbjct: 125 AVLRNFIRQDTAHNLPDNEQVLSGQPKWFYKKLVDAYPDNYKTILDAMQVKAPIWLRVNN 184 Query: 183 KF-DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 K + + L+ + + I +LPG+ EG + VQD +A + Sbjct: 185 KHKSTDEYCRLLDDRDVAYERQATQPQGIILSKGCDITTLPGYDEGWFAVQDGAAQLAAG 244 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAED 292 L G+ N VLD CAAPGGKT +I A+D+ RL+++ NL RL A Sbjct: 245 LLGSQPNDRVLDCCAAPGGKTCHIIELQPDLATCVAIDIESSRLKRIEENLTRLGHQATL 304 Query: 293 II--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 I + + +LFD +L+DAPCS+TG IRRHPD+ W R + DI Q K++ Sbjct: 305 ICGDASEPASWWDGQLFDRILLDAPCSATGIIRRHPDIKWLRKSSDIDVLVALQSKIIDA 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + +KPGG ++++ CS+ +++ + L +P + ++ + Sbjct: 365 MWALLKPGGTMLYATCSILPAENQLQINAFLNRTPDALLDDKFDNDAAQKPGR------- 417 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P + MDGF+ L + Sbjct: 418 ---QILPGEKQ--------MDGFYYARLLK 436 >gi|262089741|gb|ACY24835.1| ribosomal RNA small subunit methyltransferase B [uncultured organism] Length = 430 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 118/453 (26%), Positives = 208/453 (45%), Gaps = 40/453 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ++ R ++ +L+ +++ + SL+ LL ++++D+ L++ + T R+ P++ Sbjct: 2 ISVRAAAAQVLAKILQGQGSLSSLLPTI-----QPQVAEQDRPLLQELCFGTCRYQPQLS 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A ++ ++ L K +Q LL + + Q+L+ + D+A + VE R + LV Sbjct: 57 AYVECLVDKPLRAKDSDIQALLLLGLYQLLHTRIPDHAALGETVE-VTRFLKKPWATSLV 115 Query: 125 NSILRRVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N +LR+ R+K +L + +A P W + L + ++ I A S L Sbjct: 116 NGVLRKFQRDKSKLDKLLAQNYSFQTNHPAWIEATLRKNWPN-QLDQIIAANNSHPPFTL 174 Query: 181 TVKF---DIETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + + L A + E LP F++G VQD +A Sbjct: 175 RINTQKISRAEYLALLQDLEINAAATPFSPYGITLEHACDPRKLPLFSDGWVSVQDEAAQ 234 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLY 289 + L L VLD C APGGKT ++ VTALD +RRL ++R NL RL + Sbjct: 235 LSADLLQLSPKLRVLDACCAPGGKTGHMLEVEPSLHVTALDADERRLSRVRENLTRLGVN 294 Query: 290 -AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D+ +LFD +L+DAPCS+TG IRRHPD+ R D++ K Q KLL Sbjct: 295 ANVLCGDGTKTDWWDGELFDRILLDAPCSATGIIRRHPDIKVLRTPDELDKLGELQAKLL 354 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 S +KPGG+++++ CS+ +++ +V++ L+ A +D + + Sbjct: 355 NNLWSLLKPGGVLIYATCSVMPKENTQVIEAFLKR---------KRDATCDLLDASWGIE 405 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P + G DGF+ L ++ Sbjct: 406 QAYGRQLLPS--------TEGHDGFYYARLIKV 430 >gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718] gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718] Length = 426 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 106/447 (23%), Positives = 190/447 (42%), Gaps = 42/447 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L++ + V +LT +L + + L+ + + ++ I LR ++DA+L Sbjct: 6 LLAVQAIREVFA-GANLTEVLRNIWQTGSH--LTPQQRGAIQDIAYGVLRHYGQLDAILH 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L + + L LL V++ Q+ Y +A+VD AV +++ N + LVN++L Sbjct: 63 KLLNKPV--QDKQLHYLLAVALYQLRYSKAPAHAIVDHAVSSSRKITRNPAVSGLVNAVL 120 Query: 129 RRVSRE----KIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-- 181 R R+ ++ P+W+ ++L Y ++ + ++ + + + Sbjct: 121 RNFMRKRTSLPDQIRNDDIARYSYPQWWIDKLRQQYPQDYEAILLAGNEHPAMILRVNRL 180 Query: 182 ---VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 V + P ++ LPGF+EG+ VQDA A L Sbjct: 181 RTSVDHYQAMLDAQNIDSEWLWDTALRLSRPVAVEKLPGFSEGLVTVQDAGAQFAAPLLD 240 Query: 239 TLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + VLD CAAPGGK+ L ++T LD + RL +L+ N RL + ++ Sbjct: 241 VEAGMRVLDACAAPGGKSTHLAELAENIELTVLDKQEDRLARLKENFSRLKIAGYQLVCG 300 Query: 297 DAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 DA + +L+D +L D PCS++G I RHPD+ W R +DI A Q +L Sbjct: 301 DAMSPSHWWDGQLYDRILADVPCSASGVISRHPDIKWLRRPEDIDHFAQTQTAILNGLWP 360 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ GG +++ CS+ ++++ V K L + L + + Sbjct: 361 LLQRGGKLLYVTCSVFNEENDAVADKFLTTHEDASRLPCSHGMLGRG------------- 407 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P S DGFF R+ Sbjct: 408 QLLPG---------SHHDGFFYALFRK 425 >gi|228476962|ref|ZP_04061600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus salivarius SK126] gi|228250981|gb|EEK10152.1| ribosomal RNA small subunit methyltransferase B [Streptococcus salivarius SK126] Length = 440 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 120/452 (26%), Positives = 198/452 (43%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ S L+ +D+ LV IV T+ ++ + Sbjct: 9 ARGQALEVLEEVFQEGAYSNIALNAHLSKSQ---LTDKDKALVTEIVYGTVAHKITLEWI 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KLVN Sbjct: 66 LAHVIE-DRDKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVAIAKNRGNKKGAEKLVN 124 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ + + +R + +P W ++L + YG++R LAI + + Sbjct: 125 AVLRKLSSQPLPDPSQIKRVNKRYSVQYSLPVWLVKKLIDQYGEDRALAIFQSLFVRNKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A + L + F EG+ +QD ++ + Sbjct: 185 SVRVTDASRLEEIEEATGAERSVLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 G +LD CAAPGGKT + ++ VTALD+ +L + N RL L Sbjct: 245 LGIQGEEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIEENAQRLGLADKVKT 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + +D D Q +L Sbjct: 305 QKLDASQVHQVFPADSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFESLKAVQLDILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L S P E V L+ + Sbjct: 365 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHP-DFEQVALDHP-------CKDIVVN 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G + ITP+ DGFF LR+ Sbjct: 417 GCLAITPEQYL--------TDGFFIAQLRKKA 440 >gi|254556524|ref|YP_003062941.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1] gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1] Length = 447 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 107/467 (22%), Positives = 186/467 (39%), Gaps = 46/467 (9%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + G R ++ L+ + + L+ D + +RD L+ +V ++ Sbjct: 1 MSTVGNTPRWLAVAALAKI-KNGAYSNLQLNQLINDHQ---MDRRDINLLTNMVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++ L + + +++LL ++ Q YLD + AV + +E AK K + Sbjct: 57 RLTLEYWLTPFVRHP-HQIDPWVRELLLSALYQWQYLDKIPQRAVFNETIEIAK-VKGHP 114 Query: 119 HFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + V +L ++ R + +R++ +P W + L G E++ I + Sbjct: 115 GIRRFVTGVLHQMDRSGLPSFDAIKDPDERLSVTYSMPIWLIQELRRQLGAEKMERILSS 174 Query: 172 CISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 P L V + T L + L ++ G++ Sbjct: 175 LNQPAKQALRVNPALSTVEDVTTVLINDGLTITPSEISPLGLIATDGQAINTEAMRYGMF 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEK 278 VQD SA + V + VLD CAAPGGKT Q G V ALD+ +++ Sbjct: 235 TVQDESAQLVVPALNLQPSDRVLDACAAPGGKTTQIAASLDAEQGGTVVALDIHANKVKL 294 Query: 279 LRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + N R+H+ A ++ + FD +LVDAPCS G +RR P++ + + Sbjct: 295 IGQNAARMHVADRVEATELDARKVETQFNAESFDRILVDAPCSGLGLMRRKPEIRYEKQL 354 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D + Q +L +K GGI+ +S C++ +Q++++V+ K L P EL Sbjct: 355 QDSLNLQRIQLAILTAVAPTLKKGGIMTYSTCTILQQENQDVITKFLADHP-DFELQTTP 413 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D E + I PD DGFF LR+ Sbjct: 414 TERDLKTDRT-----EKTLSIYPDDYLS--------DGFFIACLRKK 447 >gi|299768269|ref|YP_003730295.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1] gi|298698357|gb|ADI88922.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1] Length = 434 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 205/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALG 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ ++ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWG-EQTESLCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + L E I LPGF EG + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACTLSEAGIVLEQSVQITQLPGFEEGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 V L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CVILLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDSNRLIRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SQTEILAADATQWVPAEPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + GG +++ CS+ K ++E+ + E+ I+ L Sbjct: 358 EHMWQQLNVGGTLLYITCSVLKAENEQQMINFFAEHSDAKEIK---------IEANWGLE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ ++++ Sbjct: 409 QIHGRQLLPQAQSG--------DGFYYCKIQKIA 434 >gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC 33035] gi|311305318|gb|EFQ81386.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC 33035] Length = 516 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 103/456 (22%), Positives = 162/456 (35%), Gaps = 37/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R V+ ++ V +L + L RD I TLR L +DA Sbjct: 78 APRAVAFDVVRRVSDDDAFANLILPRALRK---QKLKGRDAAFATEITYGTLRTLGVVDA 134 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L ++ LR+ Q+LY V +A VD V + N Sbjct: 135 VIAECSSRGLEAISPAVVDALRLGTYQVLYTRVEPHAAVDTTVRLVEA-AGEVKAKGFAN 193 Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 I+R +SR + IA P W E G + A A Sbjct: 194 GIMRTISRTPAKTWLDKLAPQGEIACIAFKHAHPTWIAESFSRVLGLGELEAALAADSDR 253 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + L +G+ VQD + + Sbjct: 254 PSVHLVARPGEISAEELALMTGNEEGCYSPYAVYMESGDPGQLEPVRQGLAAVQDEGSQL 313 Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + + LDLCA PGGK A + +A D + + + Sbjct: 314 IARAVCEAPLEGEDSGRWLDLCAGPGGKAALMGALARIDSAHVDAVEVSPHRAALIEKTV 373 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 D+ D + + FD VLVDAPCS G +RR P+ W + DI + Q + Sbjct: 374 SDLPVDVHVADGRNPGVGEGFDRVLVDAPCSGLGALRRRPEARWRKSEADIAELNQLQFE 433 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ V+PGG+V++S CS D +++ +V + +R + E + ++ D+ Sbjct: 434 LLSSALNLVRPGGVVIYSTCSPDLRETRGIVDRAVRE--LGAEELDAHALIPDMGDVGH- 490 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 E +++ P G D F ALRR Sbjct: 491 ---EKSVQMWPH--------RHGTDAMFFAALRRAA 515 >gi|300858538|ref|YP_003783521.1| hypothetical protein cpfrc_01121 [Corynebacterium pseudotuberculosis FRC41] gi|300685992|gb|ADK28914.1| hypothetical protein cpfrc_01121 [Corynebacterium pseudotuberculosis FRC41] gi|302206250|gb|ADL10592.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium pseudotuberculosis C231] gi|302330808|gb|ADL21002.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium pseudotuberculosis 1002] gi|308276492|gb|ADO26391.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium pseudotuberculosis I19] Length = 504 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 99/453 (21%), Positives = 153/453 (33%), Gaps = 37/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ H+L V + +L + RD + TLR L +D + Sbjct: 67 ARSLAFHVLHRVSSEDAFANLVLPKLLNKANVHG---RDAAFATELTYGTLRTLGVLDTL 123 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L L LR+ Q++Y+ V +A VD V + + N Sbjct: 124 LAECSSRGLETIHPELLNALRLGAYQLMYMRVEPHAAVDTTVRIVEA-LGHDKAKGFANG 182 Query: 127 ILRRVSREKIELLQ----------RIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 ILR +SR IA + PEW G + A Sbjct: 183 ILRTISRSTPAEWMERLAPQGEVANIAFRTAHPEWIAHSFSRVVGLSNLEDALRADSDRP 242 Query: 177 YIDLTVKFDIETWAHK---LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + L + + + L + + VQD + + Sbjct: 243 IVHLVARPGEISALELSLITGGEQGKYSPYAVYLGSGDPGELEPVQQQLAAVQDEGSQLI 302 Query: 234 VQLFGTL-----NNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH 287 + + LDLCA PGGK A L A D + + R + Sbjct: 303 ARALTEASVDGTDTGRWLDLCAGPGGKAALLGALARIDAAHVDAIEVSEHRARLIEKTVA 362 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + D +D VLVDAPCS G +RR PD W + DI + QR+L Sbjct: 363 GLPVRVKIADGRRPGLDNGYDRVLVDAPCSGLGALRRRPDARWRKRESDIAELVPLQREL 422 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L V+PGG+VV+S CS D +++ E+V L + + + + D Sbjct: 423 LASACELVRPGGVVVYSTCSPDLRETREIVDYALS--DLGMVEEDAATLVPEMSDTGEYK 480 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +++ P G D F L++ Sbjct: 481 S----VQMWPH--------QHGTDAMFFAVLKK 501 >gi|332873408|ref|ZP_08441362.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6014059] gi|332738471|gb|EGJ69344.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter baumannii 6014059] Length = 434 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ +G E+ A+ + + L Sbjct: 119 GIVNAILRRATRETEDFEQGLQQAHGLPSWLFKRLKKDWG-EQTEALCQSLKQVAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + E I LPGF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWTPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMTNFFTEHADAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIA 434 >gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis 05HAS68] Length = 444 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 104/443 (23%), Positives = 188/443 (42%), Gaps = 25/443 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ +L V + L+ S LS +D+ L +V T+ Sbjct: 4 NKHETARSLALSVLEQVFDQGAYSNIALNKALESSR---LSAQDKGLATELVYGTVSRKI 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHF 120 ++ L + + + LL +S+ Q++YLD +AVV+ AV AKR F Sbjct: 61 TLEWYLAHFIE-DREKLDTWVYYLLMLSLYQLVYLDKLPTHAVVNEAVNIAKRKPGTDKF 119 Query: 121 AKLVNSILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI--S 174 + L + + +R++ +P W + L YG ER I + + Sbjct: 120 VNAILRKLSQDSLPKPADIKRKNKRLSVQYSVPVWLVQTLIAEYGDERAEKIFQSLHDRN 179 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + +T +E A +L A + L + F +G+ +QD ++ + Sbjct: 180 KASVRVTDGQQVEQLAEELGAQHSQLSPVGLVKSHGHFAGTDYFKKGLITIQDETSQLVA 239 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G + +LD CAAPGGKT + ++ KV ALD+ +L + N RL L + Sbjct: 240 PTLGIQGDEIILDACAAPGGKTCHMASYLTDGKVYALDLYDHKLNLIEENARRLGLEDKI 299 Query: 293 IIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +LVDAPCS G IRR PD+ + + + D Q ++L Sbjct: 300 ETKGLDASRVHEEFGPDTFDKILVDAPCSGIGLIRRKPDIRYNKASMDFDSLKTIQLQIL 359 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GGI+ +S C++ ++++EV+Q+ L++ P ++ + + Sbjct: 360 DSVCQSLKIGGIITYSTCTIIAKENQEVIQEFLQNHPNFEQVTLEHP--------QTDIM 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMD 431 +G + IT + + ++ S +D Sbjct: 412 VDGCLLITLNSIRQMAFSSVNLD 434 >gi|296117963|ref|ZP_06836546.1| sun protein [Corynebacterium ammoniagenes DSM 20306] gi|295969194|gb|EFG82436.1| sun protein [Corynebacterium ammoniagenes DSM 20306] Length = 426 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 90/442 (20%), Positives = 155/442 (35%), Gaps = 37/442 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + +L + L RD + TLR +DA++ L Sbjct: 1 MHSDDAFANLILPKSLRANQ---LEGRDAAFATELAYGTLRAEGVLDAIIGEHSSRGLDT 57 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + LRV Q++Y V +A VD V + + VN I+R ++R E Sbjct: 58 LAIEVLDALRVGTYQLMYTRVEPHAAVDTTVRLVQA-AGHEKAKGFVNGIMRSITRANPE 116 Query: 138 L----------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 ++ +A P W +E + + + L + Sbjct: 117 TLLDKLTPAGEIEALAFRHAHPVWIARSFAQVVCQEELADALEGDSQRPVVHLVARPGEI 176 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--- 241 E A + + L +G+ VQD + + + Sbjct: 177 TAEELALMTGSDEGKYSPYAVYMDSGDPGDLEPVQQGLAAVQDEGSQLIARAVVEAPLEG 236 Query: 242 --NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 LDLCA PGGK A + A+ D + + + + D+ D Sbjct: 237 EDQGRWLDLCAGPGGKAALMGSLARMDGAVVDAVEVSEHRAQLVKKTVGDLPVDVHVADG 296 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + + +D +LVDAPCS G +RR P+ W + DI + + Q +LL +S ++PG Sbjct: 297 RNPGLEPGYDRILVDAPCSGLGALRRRPEARWRKSESDIAELSTLQFELLKSAVSLLRPG 356 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S CS D +++ +V + L EL + I + +++ P Sbjct: 357 GVIVYSTCSPDLRETRNIVDRALA------ELDVVEDNAHDLIPDMGDVGEHKSVQMWPH 410 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 G D F LR+ Sbjct: 411 --------RHGTDAMFFAVLRK 424 >gi|110832990|ref|YP_691849.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax borkumensis SK2] gi|110646101|emb|CAL15577.1| tRNA and rRNA cytosine-C5-methylase, putative [Alcanivorax borkumensis SK2] Length = 447 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 114/450 (25%), Positives = 193/450 (42%), Gaps = 42/450 (9%) Query: 7 ARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 RL + L+ V+ SL +L L D +R I R L + Sbjct: 16 PRLSAVRALNRVLPGKGDGESLREVLRDF-------PLQGSDGGQMRDICFGVCRHLRPL 68 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + L+ L L ++ L + ++ + + +A+V+ + ++ + A L Sbjct: 69 NHWLNQQLSKPLKGSAQPVRLALLAGLYELWFSNRPAHAIVNAYPQLCRK-LKAPWAAGL 127 Query: 124 VNSILRRVSREKIELLQRIAGISI---IPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LR+ S+ +E A I+I +P+W +R E + A++ A + L Sbjct: 128 SNAVLRKASQITLEQAVADAPINIQLSLPDWLFKRWEKDWPNN-ADAMARANLQTPPFTL 186 Query: 181 TVKFDIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 V + A + A + ++ LPGF +G VQD +A +P Sbjct: 187 RVNRQQQQRADAIAALGEGARAGYIAPYSIYLQPARPVLQLPGFEQGALSVQDEAAQLPA 246 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 +L +LD CAAPGGKT Q A ++AL++ +RL ++R NL RL Sbjct: 247 ELLQAPAKGRILDACAAPGGKTGQLREKFPAADLSALELEGKRLARIRENLARLGTDVTL 306 Query: 293 II--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D + FDA+L+DAPCS+TG +RR PDV W R DI Q ++L Sbjct: 307 LQGDASDPKTWWDGTPFDAILLDAPCSATGILRRQPDVKWHRKASDIGVLVDLQARMLDA 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +KPGG++V++ CS+ + +++ V+ L+ P ++ P + Sbjct: 367 LWPLLKPGGMLVYATCSVLRDENDHQVRNFLQRQPQARDVTP--------RPEGATMVDA 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 GW ++ P G DGF+ LR+ Sbjct: 419 GW-QLFP--------EQHGPDGFYLACLRK 439 >gi|296386489|ref|ZP_06875988.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa PAb1] Length = 434 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAVDTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ + A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDTLCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 + +L + VLD C APGGKT L+ + +V A+D+ + RL ++R NL RL L Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13] gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_27] gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13] gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_27] Length = 435 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 102/452 (22%), Positives = 194/452 (42%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V K L+ + ++ +++ + I +R +D Sbjct: 1 MNVKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D + VV A E AK+ +K + Sbjct: 57 YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDNKGVVWEATELAKKKYG-VPISKFI 112 Query: 125 NSILRRVSREKIE------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + IP+WF + LE YG E + + Y+ Sbjct: 113 NGTLRNYLRNKDSELKSLADEKNYEVLYSIPKWFCDMLEKQYGNENLKQAITSLKKIPYL 172 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 + V T + I I++ F G QDAS+ + Sbjct: 173 SVRVNKLKYTEKEFEEFLKEKDIQIIKKIDTVYYINSGLIINSEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + G + N VLD+CAAPGGKT + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLGVMPNELVLDICAAPGGKTAVLTENMENRGEIIAIDIHQHKIKLIETNMKKLGID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ ++I + A Q ++L Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++S C++ +++ ++K L+ + +++ Sbjct: 353 NSAADILKDGGELIYSTCTITDEENTNNIEKFLKEREEFKV-----EKLYILENVSGDYD 407 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I+ MD F+ + L + Sbjct: 408 KLGGF--------CINYKEEIMDNFYIIKLVK 431 >gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus faecalis E1Sol] gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus faecalis E1Sol] Length = 459 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKIDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|62390481|ref|YP_225883.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glutamicum ATCC 13032] gi|41325818|emb|CAF21607.1| PUTATIVE 16S RRNA M(5)C 967 METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] Length = 511 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 37/455 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V +L LS RD I TLR + +D Sbjct: 75 KPREIAFEVLDRVRTGEAYANLVLPRLLSKH---NLSGRDAAFATEITYGTLRNVGLLDE 131 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L + +LR+ Q+++ V D+A VD +V+ K+ + N Sbjct: 132 VIKAASGRELSDIDPEVLDVLRLGAYQVMFTRVEDHAAVDTSVKMVGGLKKFQ-ATGFAN 190 Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +ILR ++R++ E R+A + P W + + + A A Sbjct: 191 AILRNITRKEPEQWLKELEPAEELARVAFRTAHPRWIAQSFSQVLPADELEAALAADSER 250 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + + +G+ VQD + + Sbjct: 251 PVVHLVARPGEISAEELALITGGDEGKYSPYAVYLEGGDPGDIEPVKDGLAAVQDEGSQL 310 Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + + LD+CA PGGK A + A D + + R + Sbjct: 311 IARALVEIPVEGTDAGRWLDMCAGPGGKAALIGALARMDRATVDAVEVSDHRARLIEKSV 370 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D +D LVDAPCS G +RR P+ W + DIV+ Q + Sbjct: 371 RGLPVKVHVGDGRTINLTGGYDRALVDAPCSGLGALRRRPEARWRKQESDIVELNTLQYE 430 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ V+ GG++V+S CS D +++ +V K L L + + Sbjct: 431 LLESAVNKVRSGGVIVYSTCSPDLRETRGIVDKALG------ALEIEELEAAEFMPGMTD 484 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +++ P G D F LR+ Sbjct: 485 TGDEKSVQMWPH--------RHGTDAMFVAVLRKK 511 >gi|145295720|ref|YP_001138541.1| hypothetical protein cgR_1647 [Corynebacterium glutamicum R] gi|140845640|dbj|BAF54639.1| hypothetical protein [Corynebacterium glutamicum R] Length = 503 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 37/455 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V +L LS RD I TLR + +D Sbjct: 67 KPREIAFEVLDRVRTGEAYANLVLPRLLSKH---NLSGRDAAFATEITYGTLRNVGLLDE 123 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L + +LR+ Q+++ V D+A VD +V+ K+ + N Sbjct: 124 VIKAASGRELSDIDPEVLDVLRLGAYQVMFTRVEDHAAVDTSVKMVGGLKKFQ-ATGFAN 182 Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +ILR ++R++ E R+A + P W + + + A A Sbjct: 183 AILRNITRKEPEQWLKELEPTEELARVAFRTAHPRWIAQSFSQVLPADELEAALAADSER 242 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + + +G+ VQD + + Sbjct: 243 PVVHLVARPGEISAEELALITGGDEGKYSPYAVYLEGGDPGDIEPVKDGLAAVQDEGSQL 302 Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + + LD+CA PGGK A + A D + + R + Sbjct: 303 IARALVEIPVEGTDAGRWLDMCAGPGGKAALIGALARMDRATVDAVEVSDHRARLIEKSV 362 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D +D LVDAPCS G +RR P+ W + DIV+ Q + Sbjct: 363 RGLPVKVHVGDGRTINLTGGYDRALVDAPCSGLGALRRRPEARWRKQESDIVELNTLQYE 422 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ V+ GG++V+S CS D +++ +V K L L + + Sbjct: 423 LLESAVNKVRSGGVIVYSTCSPDLRETRGIVDKALG------ALEIEELEAAEFMPGMTD 476 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +++ P G D F LR+ Sbjct: 477 TGDEKSVQMWPH--------RHGTDAMFVAVLRKK 503 >gi|23308856|ref|NP_600813.2| tRNA and rRNA cytosine-C5-methylase [Corynebacterium glutamicum ATCC 13032] gi|21324368|dbj|BAB98992.1| tRNA and rRNA cytosine-C5-methylases [Corynebacterium glutamicum ATCC 13032] Length = 444 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 95/455 (20%), Positives = 161/455 (35%), Gaps = 37/455 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V +L LS RD I TLR + +D Sbjct: 8 KPREIAFEVLDRVRTGEAYANLVLPRLLSKH---NLSGRDAAFATEITYGTLRNVGLLDE 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L + +LR+ Q+++ V D+A VD +V+ K+ + N Sbjct: 65 VIKAASGRELSDIDPEVLDVLRLGAYQVMFTRVEDHAAVDTSVKMVGGLKKFQ-ATGFAN 123 Query: 126 SILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +ILR ++R++ E R+A + P W + + + A A Sbjct: 124 AILRNITRKEPEQWLKELEPAEELARVAFRTAHPRWIAQSFSQVLPADELEAALAADSER 183 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + + +G+ VQD + + Sbjct: 184 PVVHLVARPGEISAEELALITGGDEGKYSPYAVYLEGGDPGDIEPVKDGLAAVQDEGSQL 243 Query: 233 PVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + + LD+CA PGGK A + A D + + R + Sbjct: 244 IARALVEIPVEGTDAGRWLDMCAGPGGKAALIGALARMDRATVDAVEVSDHRARLIEKSV 303 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D +D LVDAPCS G +RR P+ W + DIV+ Q + Sbjct: 304 RGLPVKVHVGDGRTINLTGGYDRALVDAPCSGLGALRRRPEARWRKQESDIVELNTLQYE 363 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ V+ GG++V+S CS D +++ +V K L L + + Sbjct: 364 LLESAVNKVRSGGVIVYSTCSPDLRETRGIVDKALG------ALEIEELEAAEFMPGMTD 417 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +++ P G D F LR+ Sbjct: 418 TGDEKSVQMWPH--------RHGTDAMFVAVLRKK 444 >gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2134] gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2134] Length = 459 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILENVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724] gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724] Length = 430 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 172/450 (38%), Gaps = 39/450 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M RL ++ +L + R+ L LL F LS +++ + +V R+ +D Sbjct: 1 MEVRLRAAEILYDLERREAYLNILLRNRL---PFYDLSLKEKHFITELVYGVTRWKITLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRD-KENRHFAK 122 + + + LLR+ V + +L D V+ VE AK+ + Sbjct: 58 YIWSRFVRR--DNLSLFSKVLLRLVVYHVYFLKDTILPVAVNEIVEIAKKKVPKEAKLIN 115 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 V+ + R + +P++ E ++ G+ + + + V Sbjct: 116 AVSRNIIREKNNLNLNSIPLHIRYGVPDFILEEWFDYIGRGEAVKALSWLNRSHNVSIRV 175 Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKELP------ESIVSLPGFAEGVWWVQDASASIP 233 + KL + L + F EG + +Q ++ +P Sbjct: 176 NTLKISKKDLKEKLLERRIKFKDGNLVDQALIIEDGFDFERSDLFNEGYFVIQSEASMLP 235 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + V+DLC+APG K+ L + + K+ ++D++K RL + N RL + Sbjct: 236 ALILNPKPGNRVIDLCSAPGLKSTHLAELMKNQGKIISVDINKNRLRLVEENAKRLGISI 295 Query: 291 EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D + + FD VL+DAPCS G I P++ W DDI + Q K+L Sbjct: 296 IETFSQDVLNLPSSLDRSFDRVLLDAPCSGLGVISHKPEIKWRLKRDDIYNLSEMQVKML 355 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +K G +V+S C++ ++E V+ + L+ +P +LV Sbjct: 356 ERAGKLLKREGRMVYSTCTITWHENESVLLQFLQRNP-EFKLVNFKYKGELFP------- 407 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 G +++ P DGFF + Sbjct: 408 --GIMKVLPHKY--------NTDGFFIALI 427 >gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM 273] gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM 273] Length = 442 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 106/456 (23%), Positives = 194/456 (42%), Gaps = 33/456 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S AR ++ ++L + LL S L D+ L A+ + LR Sbjct: 1 MTS---ARELAFNILQQLEAGTRHSDSLLHELLEAS---SLKGPDRALATALTSGVLRQR 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D ++ + + ++ +LR+ V Q+L+LD V +A V+ V A+R K R Sbjct: 55 LQLDFIIAKFYSHDIQKASPAVLNILRLGVWQLLFLDRVPRWAAVNECVRLARRYKGER- 113 Query: 120 FAKLVNSILRRVSREKIELLQRI---------AGISIIPEWFKERLENFYGKERVLAISD 170 +KL N++LR++S E + L + + + PE R YG++R ++ Sbjct: 114 MSKLTNAVLRKISPETVHLDLWLKDASLSERLSVLHSHPEPLVRRWIGNYGEQRTESMLR 173 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL---PGFAEGVWWVQD 227 + T A + + + P +G+ VQ+ Sbjct: 174 YDNEHPLFGIRHNPLKGTNAKGAEGEESGWQESGIPGIRLAADFHLFEPLLRQGLASVQN 233 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 + ++ V L + VLDLCAAPGGK A + + ++ ALD ++ +++ D Sbjct: 234 PTQALAVLLLDPQPDWKVLDLCAAPGGKAAHAAELMGNRGEIIALDRYPQKTLRIQALAD 293 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L + + DA ++ P DA+LVDAPC+ TG + R ++ W + + + + Q Sbjct: 294 TLGISIIEARTGDAREFTPPFQPDAILVDAPCTGTGVLGRRAELRWKTGPEKLRELSGLQ 353 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + GG++++S CS++ ++++ V+ L+ P Sbjct: 354 EEILRHAAGLLAEGGLLLYSTCSVEPEENQLQVEAFLQQHPAFRIEQATGKV---PEPFC 410 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +PEG I P G DG +AV LR+ Sbjct: 411 LERTPEGGILTLPG-------ARPGFDGGYAVLLRK 439 >gi|237738183|ref|ZP_04568664.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420063|gb|EEO35110.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 433 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 105/454 (23%), Positives = 201/454 (44%), Gaps = 41/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + L+ V L+ + ++ LS++++ + + +R +D Sbjct: 1 MNIKARVISLIKEVE-NGKFSNIALNEYFKEN---NLSKKERGFITELFYGVIRNKIFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +D + KK ++ +LR+S+ QI +++ D V+ A E AK+ K + K + Sbjct: 57 YEID---KRTTTIKKDWIRNILRISMYQISFMNSDDKGVIWEATELAKK-KFSVPVGKFI 112 Query: 125 NSILRRVSREKIELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N +LR RE E ++ + PEWF +L + YG+E + YI Sbjct: 113 NGVLRSYQREWQEDVKELKESGKNYIYLSYPEWFYNKLVSEYGEEEGELFLQSLKKIPYI 172 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS--------LPGFAEGVWWVQDASA 230 V + ++ + +L I + + +S+ F +G VQDAS+ Sbjct: 173 SFRV--NRLKYSCEEFEKLLEEKKIDIIKKVDSVYYVDSGILLYSDEFRDGKIIVQDASS 230 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + + SVLD C+APGGKTA +L+ + ++ ALD+ +L+ + N + Sbjct: 231 YLSARNLNPKPDESVLDTCSAPGGKTAVLGELMENRGELLALDIYPHKLKLIEENCHKCG 290 Query: 288 LYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++MDA K FD +LVDAPCS G +R+ P+ ++ ++++++ + A Q + Sbjct: 291 VDIVRTVKMDARKLKEQGKKFDKILVDAPCSGYGVLRKKPEAIYNKNSENVEELAKLQFE 350 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L +K G +V+S C++ K+++ E ++K L P + + Sbjct: 351 ILESASQVLKDNGELVYSTCTILKEENGENIKKFLEKYPNFETVELYIPENVNGSYDNVG 410 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +D +DGF+ V L++ Sbjct: 411 -------------GFTVDYKEDILDGFYIVKLKK 431 >gi|308177752|ref|YP_003917158.1| RNA methyltransferase [Arthrobacter arilaitensis Re117] gi|307745215|emb|CBT76187.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117] Length = 507 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 100/473 (21%), Positives = 177/473 (37%), Gaps = 48/473 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ L V +L + L +RD + LR DA Sbjct: 47 PARLVAFRTLREVSGSDAYANLVLPKMIREYQ---LDRRDAGFATELAYGALRGQGFYDA 103 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L ++ L ++ LR+ Q+L + V +A +D V A+ + L+N Sbjct: 104 ILATLVDRDLSELDPAILDALRLGAHQLLAMRVPKHAALDETVSLARAQIG-AGPSGLIN 162 Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE-----RVLAI 168 ++LRRVS ++ + + P+W L + A+ Sbjct: 163 AVLRRVSGQEADQWTEQLGSAASSESERLSIEHSHPDWIVRALRGALITHGRDASELEAL 222 Query: 169 SDACISPLYIDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 +A ++L + A L A + +PG EG VQ Sbjct: 223 LEADNLAPLVNLVSLPGLGDLAGALESGAEPGTLLSDSATYKHGDVARVPGVKEGTVRVQ 282 Query: 227 DASASIPVQL------FGTLNNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRL 276 DA + + + + LD+CA PGGK A + A++TA + ++ R Sbjct: 283 DAGSQVMARALANIELPEAGEDRYWLDMCAGPGGKAALLGAIAVQRDARLTANEPTEHRA 342 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + +LD + + D + + +D ++VDAPCS G +RR P+ W + Sbjct: 343 RLVENSLDAVPHDYWMVTTEDGRSFAGEDFAGDYDRIMVDAPCSGLGALRRRPESRWRKA 402 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV-- 391 DI + Q +LL + V+ GG++ F CS + ++ VV+ L+ L Sbjct: 403 PRDIPELTSLQGELLDAAFNAVRVGGVIGFVTCSPHQAETRLVVEDFLKRHENAALLDTS 462 Query: 392 -PLNSAYWKSIDMAMALSPEGWI-RITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++S +++ A +G ++ P + G D F L + Sbjct: 463 AAVSSVMYENAPPAGHDLGDGTTAQLWPHV--------HGTDAMFMAILTKKA 507 >gi|253582362|ref|ZP_04859585.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] gi|251835901|gb|EES64439.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725] Length = 432 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 101/453 (22%), Positives = 192/453 (42%), Gaps = 38/453 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + + L+ V L+ + ++ L+++++ + + +R +D Sbjct: 1 MNVKQRAIGLIQEVE-NGKYSNIALNEYFKENI---LNRKERGFITELFYGVIRKKIFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + KK ++ LLR+S+ QI ++ + VV A E AK+ K V Sbjct: 57 YEINKRVS---SIKKDWIRNLLRISIYQITFMKSDNKGVVWEASELAKKKFG-VPVGKFV 112 Query: 125 NSILRRVSREKIELL------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N +LR RE + ++ + P WF E+++ YG E ++ YI Sbjct: 113 NGVLRGYLREMDNDIKELRETDKLDILLSYPRWFYEKIKEEYG-ENAELFLESLKKIPYI 171 Query: 179 DLTVKF------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 V + E + ++ ++ F +G VQDAS+ + Sbjct: 172 SFRVNTLKYSEKEFEKLLLDKDIEIIKKVDTVYYLDSGILLYSNEFKDGKIIVQDASSYL 231 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + VLD C+APGGKTA +L+ + ++ ALD+ +L+ + N +L + Sbjct: 232 SAKNLNPNEQDLVLDTCSAPGGKTAVLGELMGNKGEILALDIYPHKLKLIEENCKKLGID 291 Query: 290 AEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I+MDA K FD +LVDAPCS G +R+ P+ ++ + ++I + Q ++L Sbjct: 292 IVKPIKMDARKLNQQGKKFDKILVDAPCSGYGVLRKKPEAIYNKTPENIELLSELQFEIL 351 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K G +V+S C++ K+++ E +++ L P + + ++ Sbjct: 352 ESASQVLKDDGELVYSTCTILKEENTENIKRFLEKYPEF-----ETAEVYIPENVKGTYD 406 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I D +DGF+ +R+ Sbjct: 407 EAGGFTI--------DYNEDILDGFYIAKIRKK 431 >gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96] gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis R712] gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis S613] gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 512] gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 516] gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96] gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis R712] gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis S613] gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 512] gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis DAPTO 516] Length = 459 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 113/469 (24%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + R ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus oceani AFC27] gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus oceani AFC27] Length = 435 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 119/458 (25%), Positives = 204/458 (44%), Gaps = 42/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R++++ +L V+ + SLT +L A L RDQ + + LR+L Sbjct: 1 MTKSANTRIIATSVLVRVLGQGRSLTAVLP-----PAMAHLPARDQAFTQTLCYGVLRWL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR+D + +L L + L LL + + Q+ L + +A + V A+ Sbjct: 56 PRLDYLAQKILHKPLRARDRDLYALLLLGLYQLTELGIPSHAALSETVNAAES-LGKPWA 114 Query: 121 AKLVNSILR----RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 K++N+ LR + + ++ + P+W + + N + I+ A S Sbjct: 115 KKMLNATLRAYLRNETALQTQVTAHETAHTAHPQWLLDAIRNSWPDHWPQIIT-ANNSHP 173 Query: 177 YIDLTV---KFDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + L + + + + + +L + T + E P + +LPGF +G VQD Sbjct: 174 PLSLRINRLQNNRKNYLQELKRNDIKAWPIPHTESGVILEQPCQVATLPGFLKGQVSVQD 233 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLD 284 + L VLD CAAPGGKT+ ++ ++ ALD+ RLE+L NL Sbjct: 234 GAGQRAAPLLALTPGQRVLDACAAPGGKTSHILELEPQLETLIALDLDATRLERLNSNLK 293 Query: 285 RLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L AE I + + FD +L+DAPCS +G IRRHPD+ R DI+ A Sbjct: 294 RLQLKAEVIQGNALQPDTWWDGIPFDRILLDAPCSGSGVIRRHPDIKALRRESDILPLAT 353 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q++LL + PGG++++ CS+ ++E+ +++ L + P E + +D Sbjct: 354 LQKRLLSALWPLLAPGGMLLYCTCSILPIENEQQIREFLLTHPDGQE---------RPLD 404 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L ++ M E +DGF+ L + Sbjct: 405 VPWGLLQTAGRQLLTGMEE--------LDGFYYACLEK 434 >gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga thiooxidans DMS010] gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga thiooxydans DMS010] Length = 406 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 103/419 (24%), Positives = 184/419 (43%), Gaps = 34/419 (8%) Query: 38 FRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD 97 L+ ++ + + LR P + + + +L K + L + Q+ L Sbjct: 5 LPQLNDNERSFYQQLCYGVLRLHPTLIFLGNQLLKKPFKNKDADIAALFLTGLYQLRDLR 64 Query: 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI----IPEWFK 153 +A + V AK+ + L+N+ LR R+ EL ++ + PEW Sbjct: 65 TPSHAAISETVNAAKK-LGKQWATGLLNACLRNYQRQHTELEAQLQHNPVAGTAHPEWLL 123 Query: 154 ERLENFYG-KERVLAISDACISPLYIDLT-VKFDIETWAHKLNA------VMLPTGGIRL 205 ++ ++ + + + ++ +P+ + + + ET+ +L + L Sbjct: 124 QQYQSDWPDHWQQITQANNQQAPMMLRVNRQQASRETYLQQLLQQDIGATALRDCDDGVL 183 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSG 263 + +LP F G+ VQD +A + V++ + +LD CAAPGGK+ Sbjct: 184 LSKAYDVNALPNFETGMASVQDGAAQLVVKMLDIQPDQHILDACAAPGGKSCHILEQHPD 243 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 + ALD+S RL+++ NL RL L A + D + +LFD +L+DAPCS +G Sbjct: 244 NTLVALDISAERLKQIEQNLSRLQLGAQLKAADASDTDAWWDGELFDRILIDAPCSGSGV 303 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 IRRHPD+ R +DI A Q++LL + +K G++V++ CS K+++E+ ++ L Sbjct: 304 IRRHPDIKLLRRPEDITSLAHTQQQLLDKLWPLLKADGLMVYTTCSAFKKENEQQIEAFL 363 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P EL + P G+ R+ MDGF+ LRR Sbjct: 364 QRHPDAKEL--------RFEQAPATARPYGYQRL---------PGDDVMDGFYYACLRR 405 >gi|254237740|ref|ZP_04931063.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126169671|gb|EAZ55182.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] Length = 434 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ A+ A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 + + + VLD C APGGKT L+ + +V A+D+ + RL ++R NL RL L Sbjct: 234 LAAEQLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|49088860|gb|AAT51614.1| PA0017 [synthetic construct] Length = 435 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ A+ A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + + + VLD C APGGKT L+ + + V A+D+ + RL ++R NL RL L Sbjct: 234 LAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|153003322|ref|YP_001377647.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5] gi|152026895|gb|ABS24663.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5] Length = 439 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 111/459 (24%), Positives = 174/459 (37%), Gaps = 45/459 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+AR ++ +L V + LD + L R+ L +V TLR +D Sbjct: 1 MSARQIAFEVLRRVDEGGAYASRALDAALTGAG--ALDPREAGLATELVYGTLRRSLTLD 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A L + + LR+ Q+L++ +A V V K R A V Sbjct: 59 AALAPHSRRPVGALDPPARVALRLGAYQLLFMGKPPHAAVGETVSLVKAVDHGR-AAGYV 117 Query: 125 NSILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 N++LR ++R +A +P W E + G LA++ P Sbjct: 118 NAVLRALARAPALPEPPPLSVDPAGHVALAEALPRWLAEEWVEWLGPAEALALARGMNQP 177 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV------WWVQDAS 229 + + + + + L R + A + VQD + Sbjct: 178 APLTVR-SPARDALVERARSAGLAAEPTRRSPDGVLLAGASVAALARAAGGLPFQVQDEA 236 Query: 230 ASIPVQLFG---TLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNL 283 A + VLD CAAPGGK L G++V A+++ R+ E+L Sbjct: 237 AQLVTLYAAGGLRGTRARVLDACAAPGGKAFHLAEQLAPGSEVVAVELHPRKAEELAREA 296 Query: 284 DRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R L ++ DA P FDAVLVDAPC+ GT+RRHP++ R +D+ + Sbjct: 297 ARRGLAGVRVVCADAARPIPGLEAGSFDAVLVDAPCAGLGTLRRHPELKLRRVPEDLARM 356 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +L + +PG + +S CSL + + VV+ LRS + Sbjct: 357 AVLQADVLAGVARYARPGAPITYSICSLSRVEGPRVVEAALRS---------GLARAGGG 407 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + L+ EG + P G DGF+A L Sbjct: 408 AVPSDVLTAEGDLLTLPH--------RHGTDGFYAARLV 438 >gi|325924335|ref|ZP_08185879.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas gardneri ATCC 19865] gi|325545200|gb|EGD16510.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas gardneri ATCC 19865] Length = 436 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 127/453 (28%), Positives = 206/453 (45%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L + RD+ LV AI LR P Sbjct: 7 TAGVASRLAAARVLTAVFDQGRSLKAELAASLPGLS----DPRDRALVEAICFAVLRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L LP + L+ LL AQ+ L + +A + V+ + R A Sbjct: 63 AYDVALRQWLERPLPPRDAELKALLMAGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + AG P W +++L + + + ++ A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAVSADAGW---PSWLRKQLRADWGDRAETIFVASALMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + + LPGFAEG VQD SA Sbjct: 179 HRGRTDPAAYVARLAELGIAAETDPVLPDAVRLHIALPVSQLPGFAEGEVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 ++ VLD CAAPGGK A G ++TALDV RRLE+++ L R A+ Sbjct: 239 ADALPLASSARVLDACAAPGGKAAHLLERYPGLQLTALDVDARRLERVQQTLQRTVPGAQ 298 Query: 292 DIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ D + ++ FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALQAADAADPAGWWDEQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDAVCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ +P + PL + + + Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQQTP-DAQAQPLGAQFGHAAGPG--- 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 415 -------------RQRFPGEQHCDGFFYALLLK 434 >gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583] gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11] gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583] gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22] gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11] gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0309B] gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0309A] Length = 459 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPSMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1] gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2] gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200] gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3] gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8] gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704] gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188] gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0855] gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0860] gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0109] gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0470] gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0635] gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0102] gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104] gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200] gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1] gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2] gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200] gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3] gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8] gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704] gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188] gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0109] gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0860] gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0855] gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0102] gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0635] gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0470] gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2137] gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4000] gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0017] gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0012] gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0031] gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0312] gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0645] gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1302] gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1341] gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1342] gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0630] gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis 62] gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis OG1RF] Length = 459 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|169634914|ref|YP_001708650.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii SDF] gi|169153706|emb|CAP02904.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii] Length = 434 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 116/454 (25%), Positives = 206/454 (45%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S N R L V ++ SL +L+ + +++RD+ L +V TLR Sbjct: 8 SSRFNLRAQVVQTLLKV-QQGQSLASILNTQL-----NQVAERDRALFHELVLGTLRQWF 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L V + Q+L +A +A + V+ A + + Sbjct: 62 ALKSISLPLLSKPLN--NETVETCLYVGLYQVLCTRIAAHAAISETVD-ATKQLGFPALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + Q + +P W +RL+ + E+ A+ + + L Sbjct: 119 GIVNAILRRATRETDDFQQGLQQAHGLPSWLFKRLKKDWE-EQTEALCQSLKQAAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + KL ++ + + E I L GF +G + VQD A + Sbjct: 178 VNQRHIGRDAYLAKLQSLDIQARACLFSEAGIVLEQSVQITQLLGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL-- 288 L LNN +V+D CAAPGGKTA A++ A+D RL ++ NL+RL L Sbjct: 238 CATLLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQ 297 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + P + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 298 SHTEILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++ CS+ K ++E+ + P E+ I+ + Sbjct: 358 EHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHPDAKEVK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P+ DGF+ ++++ Sbjct: 409 QVHGRQLLPEAQSG--------DGFYYCKIQKIT 434 >gi|326329761|ref|ZP_08196082.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae bacterium Broad-1] gi|325952526|gb|EGD44545.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae bacterium Broad-1] Length = 489 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 117/473 (24%), Positives = 180/473 (38%), Gaps = 50/473 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K ARL + +L V +L G L RD + + TLR Sbjct: 30 KPADPARLAAFEVLKAVRVDEAYANLVLPHVLGR---LGLEGRDAAFATELASGTLRQQG 86 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DAVL + L + + + +LR+ Q+L + V D+A + +V+ A+ + A Sbjct: 87 TYDAVLAACIDRPLAKVEAKVLDVLRLGAHQVLSMRVPDHAAISTSVDLARSKVG-QGPA 145 Query: 122 KLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAI 168 VN++LR+V+R +E P W E+L G++++ A+ Sbjct: 146 GFVNAVLRKVTRITLEEWVAEVAPAREKDHDGWATVAFSHPRWVVEQLAEAVGRDQIDAL 205 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 +A P + L + T +L + S + AEG VQD Sbjct: 206 LEADNVPPSVTLVARPGRATV-DELGGTPTSYSPFGVTLDSGSPAGIEAVAEGRAGVQDE 264 Query: 229 SASIPVQLFGTLNNLS-----------VLDLCAAPGGKT----AQLIVSGAKVTALDVSK 273 + + LDLCA PGGK+ A GA + A + Sbjct: 265 GSQLVAIALAEAAVERDDEPGEDRAGSWLDLCAGPGGKSALLAALAAQQGATLVANERQP 324 Query: 274 RR----LEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPD 327 R L L H+ + P FD +LVDAPC+ G +RR P+ Sbjct: 325 HRAGLVLANLTDRSAGSHVEGVAGVVAGDGTRPPFKDATFDRILVDAPCTGLGALRRRPE 384 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 W R T D+ QR LL + + +PGG+V+++ CS ++ VVQ VL Sbjct: 385 ARWRRGTADLDVLVDLQRSLLDRAVDLTRPGGVVLYATCSPVLAETSGVVQSVLADR-SD 443 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L P+ + D A + EG +++ P G D F LRR Sbjct: 444 VRLEPIAATVGDVPDSAGPI--EGTVQLWPH--------RHGTDAMFLALLRR 486 >gi|15807162|ref|NP_295891.1| sun protein [Deinococcus radiodurans R1] gi|6459968|gb|AAF11717.1|AE002050_3 sun protein, putative [Deinococcus radiodurans R1] Length = 439 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 117/435 (26%), Positives = 184/435 (42%), Gaps = 34/435 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ +L V+ LD + L RD L IV TLR P +DA Sbjct: 37 PAREVAVRVLIRVLAGEGFAATALDSALQSAR---LPGRDAGLATHIVYGTLRHFPSLDA 93 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L +L + + LL + L+LD +AVV+ V A+ + LVN Sbjct: 94 ALSPLLTG---KTHPKARALLLAGAFEKLHLDTPLHAVVNEYVNLARDARLAP--PGLVN 148 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 ++LRRV + A + +P+W + YG++ ++D Sbjct: 149 AVLRRVEK---------ADVPDVPKWLADVYRGAYGEQASAVLADLLTPQPLWLSLSDAG 199 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + N V G EL +S+ + F +G + ++ V G + + V Sbjct: 200 VRMLEEDGNVVHPGIQGTERVELAQSLRATRAFMQGQAQPINPASLACVDALGDVAGVRV 259 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LDL G K A L GA+VT++DV R+ + R NL RL L+AE + D Sbjct: 260 LDLAGGMGIKAAMLATRGAEVTSVDVVARKHDAARANLKRLGLHAEFL-THDLTTPLDLP 318 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 AVL+DAPC+ +GT+R HP++ D + ++A Q ++L + V PGG++V+S Sbjct: 319 PAPAVLLDAPCTGSGTLRSHPEIKLRLTPDAVAEAAALQAQMLPNAAALVAPGGVLVYSV 378 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ KQ+ VV L + P +D+ + G + + Sbjct: 379 CSVTKQEGPGVVADFLAAHPEF------QPESVPELDVPHVAAGAGVLTV---------- 422 Query: 426 VSSGMDGFFAVALRR 440 G+DGFF LR+ Sbjct: 423 PLGGVDGFFIARLRK 437 >gi|257470180|ref|ZP_05634271.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064397|ref|ZP_07928882.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690073|gb|EFS26908.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 432 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 101/453 (22%), Positives = 192/453 (42%), Gaps = 38/453 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + + L+ V L+ + ++ L+++++ + + +R +D Sbjct: 1 MNVKQRAIGLIQEVE-NGKYSNIALNDYFREN---TLNRKERGFITELFYGVIRKKIFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + KK ++ LLR+S+ QI ++ + VV A E AK+ K V Sbjct: 57 YEINKRVS---TIKKDWIRNLLRISIYQITFMKSDNKGVVWEASELAKKKFG-VPVGKFV 112 Query: 125 NSILRRVSREKIELL------QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N +LR RE + + ++ + P WF E++ YG E ++ YI Sbjct: 113 NGVLRGYLREMEDDIKELRETDKLDILLSYPRWFYEKIREEYG-EEAELFLESLKKIPYI 171 Query: 179 DLTVKF------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 V + E + ++ ++ F EG VQDAS+ + Sbjct: 172 SFRVNTLKYSEKEFEELLLAKDIEIIKKVDTVYYVDSGILLYSDEFKEGKIIVQDASSYL 231 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + VLD C+APGGKTA +L+ + ++ ALD+ +L+ + N +L + Sbjct: 232 SAKNLNPSEKDLVLDTCSAPGGKTAVLGELMGNKGELLALDIYPHKLKLIEENCKKLGID 291 Query: 290 AEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++MDA K FD +LVDAPCS G +R+ P+ ++ + +++ A Q ++L Sbjct: 292 IVKPVKMDARKLNQQGKKFDKILVDAPCSGYGVLRKKPEAIYNKTAENVGLLAELQFEIL 351 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K G +V+S C++ K+++ E +++ L P + + ++ Sbjct: 352 ESASQVLKDDGELVYSTCTILKEENTENIKRFLEKYPEF-----ETAEVYIPENVKGTYD 406 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I D +DGF+ +R+ Sbjct: 407 EAGGFTI--------DYNEDILDGFYIAKIRKK 431 >gi|209963503|ref|YP_002296418.1| tRNA and rRNA cytosine-C5-methylase, putative [Rhodospirillum centenum SW] gi|209956969|gb|ACI97605.1| tRNA and rRNA cytosine-C5-methylase, putative [Rhodospirillum centenum SW] Length = 456 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 108/458 (23%), Positives = 179/458 (39%), Gaps = 45/458 (9%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + LLS + L+ + + + + +D+ V +V LR Sbjct: 1 MTP--AARIQAAIDLLSEIEATPRPADALVSQFFRNRRY--IGAKDRQGVAGLVYSVLRH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+ LD + PR + +L V AK Sbjct: 57 RGRLGWWLDRCNVMPTPRALLLAEAVLVQG---------RRADSVSGLFNGAK--FGPEP 105 Query: 120 FAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYI 178 +L+ V I+ ++ ++ +PEW + L +G +R A A + + Sbjct: 106 LNDSERRLLKAVDTHTIDHPKQPEALALEVPEWAEAPLRAAFG-DRFHAEMAAMLGEAPL 164 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDAS 229 DL E L + L + + +LP F EG++ +QD Sbjct: 165 DLRANPLKAAREQVQAALAEAGVTAAPTGLSPLGLRVQGRAPVSALPAFREGLFEIQDEG 224 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + L + V+D CA GGK A ++ + +V A DV + RL + + R Sbjct: 225 SQLVALLADPRPGMQVVDFCAGAGGKTLAIAAMMDNKGRVVASDVLEGRLTRAKERFRRA 284 Query: 287 HLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L+ + E D + K FD V+VDAPCS TGT RR+PD W + + Sbjct: 285 GLHNIETRALSSERDPWVKRHKGKFDRVVVDAPCSGTGTWRRNPDSRWRPLGPGLAELLP 344 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L V+PGG +V++ CSL +++E V+ L + P L+P+ A+ +++ Sbjct: 345 LQAAILDSAARLVRPGGRLVYATCSLLPEENERQVEAFLANHP-AFRLLPVAEAWPENLG 403 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A +R+TP DGFFA + R Sbjct: 404 AAPVTGD--TLRLTP--------ARHDTDGFFAAVMVR 431 >gi|163815235|ref|ZP_02206612.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759] gi|158449430|gb|EDP26425.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759] Length = 452 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 184/463 (39%), Gaps = 45/463 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N R V +L + + L + F +S++D+ + +V Sbjct: 1 MEK--NTREVVLSILLDIEKNHTFSNTALGTALRANQF--MSKQDRAYITRMVEGVTEKR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 R+D +++ + + + K ++ +LR+ +I Y+D V D+ +L V+ A D Sbjct: 57 MRLDYIVNQFSKTKINKCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLA-ADHGFGS 115 Query: 120 FAKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 VN +LR ++ + + + +PE E LE Y E + I Sbjct: 116 LRGFVNGVLRNIARNKDSIVFPDQEKDKRAYYSVMYSVPEELLEILERDYDYETIDRILA 175 Query: 171 ACISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEG 221 + S + V + + L + I +PGF +G Sbjct: 176 SGDSDRPTAIRVNTEKISVTAFSEKLRQNGITVERGSMNDTSLLISGYDYIRKVPGFFDG 235 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEK 278 + VQD S+ + V+ G V+D+CAAPGGKT + S V + D++ ++ E Sbjct: 236 EFVVQDQSSCLAVKAAGINEGDLVVDVCAAPGGKTMYAAMLTGSEGHVISRDLTDKKTEL 295 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + N++RL L + DA ++ + D V+ D PCS G + R D+ + + Sbjct: 296 IEENIERLGLSNVTVQVHDAREFDEELTGKADVVIADLPCSGLGIMGRKNDIKYHVSMES 355 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + A QR++L +VKPGG +V+S C++D +++E + L ++ Sbjct: 356 VKELAQLQREILDTVCRYVKPGGTLVYSTCTIDSIENDENAVWFADTH--DFSLCGIDDV 413 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + ++ I DGFF R Sbjct: 414 VPEHGGERGFVTLHQGI--------------DECDGFFISKFR 442 >gi|262370763|ref|ZP_06064087.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter johnsonii SH046] gi|262314125|gb|EEY95168.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter johnsonii SH046] Length = 434 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 198/452 (43%), Gaps = 40/452 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +N R L V + SL +L ++S +D+ L +V LR Sbjct: 10 KTLNLRAQVVKTLLAV-QNGQSLASVLQQH-----MAIVSDKDRALYHELVLGCLRQWHA 63 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + V +L L ++ L V + Q+L VA +A + VE AK+ + + Sbjct: 64 LKQVTLPLLTKPLE--NQVVETCLYVGLYQLLCTRVAAHAAISETVEAAKQ-LGMENLSG 120 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +VN+ILRR +RE + + S +P W +RL+ +G E++ IS + L V Sbjct: 121 VVNAILRRATRETEQFYDVLEQASNLPSWLSKRLKKDWG-EQLAEISYELKQVAPLTLRV 179 Query: 183 KF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + + L + L I SLPGF G + VQD A + Sbjct: 180 NTLQVSRDEYLEILEDEGIEAHACELSNVGIVLDNSLHIPSLPGFEVGGFSVQDEHAQLC 239 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-- 289 L LN V+D CAAPGGKTA + K+ ALD ++RL+++ NL+RL L Sbjct: 240 ATLLPDLNGKFVIDACAAPGGKTAHILEMYQPKKLIALDQDEKRLKRVSENLERLALSEE 299 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +II DA + +L D +++DAPCS+ G IRRHPD+ R + DI K+ Q+++L Sbjct: 300 PVEIITADAVKWTSPELADCIVLDAPCSAIGVIRRHPDIRLLRQSGDIAKTVQLQKQILE 359 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +K GG +++ CS+ K ++E+ + E+ ID + Sbjct: 360 NMWQQLKVGGTLLYITCSILKAENEQQMVDFFAEHTDAKEIK---------IDADWGIEQ 410 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P + DGF+ + ++ Sbjct: 411 IHGRQLLPQVGRG--------DGFYYCRIEKI 434 >gi|107099010|ref|ZP_01362928.1| hypothetical protein PaerPA_01000017 [Pseudomonas aeruginosa PACS2] gi|218888763|ref|YP_002437627.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa LESB58] gi|218768986|emb|CAW24744.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa LESB58] Length = 434 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 116/455 (25%), Positives = 200/455 (43%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ A+ A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 + +L + VLD C APGGKT L+ + +V A+D+ + RL ++R NL RL L Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|15595215|ref|NP_248707.1| hypothetical protein PA0017 [Pseudomonas aeruginosa PAO1] gi|46397033|sp|Q9I7A9|RSMB_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9945836|gb|AAG03407.1|AE004441_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 434 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 115/455 (25%), Positives = 199/455 (43%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ A+ A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + + + VLD C APGGKT L+ + + V A+D+ + RL ++R NL RL L Sbjct: 234 LAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|116053737|ref|YP_788172.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa UCBPP-PA14] gi|115588958|gb|ABJ14973.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa UCBPP-PA14] Length = 434 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 114/455 (25%), Positives = 198/455 (43%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+ L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSGALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ + A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDTLCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD + Sbjct: 174 RVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEATQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 + +L + VLD C APGGKT L+ + +V A+D+ + RL ++R NL RL L Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora] gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora] Length = 451 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 114/466 (24%), Positives = 185/466 (39%), Gaps = 61/466 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+++R+V+ +L V + L+ L D+ L I ++R Sbjct: 18 SAGLDSRMVAWQILQSV-AAGAYASVALEKALQRHP---LPPVDRGLATEIAYGSIRRRL 73 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D L + ++ L+ LL V + Q+L+ V A ++ VE AK+ Sbjct: 74 TLDTYLSHLGKVLANKQPPLLRWLLHVGLYQLLFVERVPSAAAINTTVELAKKSSL-ATL 132 Query: 121 AKLVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 A +VN ILR R + + I +P W L ++ G+ + A + Sbjct: 133 APVVNGILRTAHRFQQSGKAFVTLSNSSNNLEAIHSLPNWLTNNLLSWRGQMGLEAFAVT 192 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGG-------IRLKELPESIVSLPGFAEG 221 IDL + H L + + I + ++ LPGF G Sbjct: 193 SNDSPPIDLRINPLNTSRAQVLHALIKLGIKAQPLPGLSQGIAILGRLGNLQILPGFKLG 252 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W +QD +A L VLD+C+APGGK+ + + ++ ALD SK RL+K Sbjct: 253 HWCIQDRAAQWISPLLDPHPGHRVLDVCSAPGGKSTHIAELMGDVGEIWALDSSKVRLQK 312 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL L + D K FD +L+DAPCS GT+ RH D W Sbjct: 313 VVLNAKRLGLQTIHTLVADGITISDLKPEWKGTFDRILIDAPCSGLGTLVRHSDARWRIT 372 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +DI + Q +LL I +KPGG +V++ C+++ ++E + K+L SS + Sbjct: 373 FNDIKELERIQERLLKGIIPLLKPGGKLVYATCTINPNENETQITKLLNSSSNYSCI--- 429 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + S+ +GFFA L Sbjct: 430 -------------------------FQQTRWPSSAYGNGFFAAVLE 450 >gi|154707343|ref|YP_001423631.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|165922514|ref|ZP_02219685.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii RSA 334] gi|154356629|gb|ABS78091.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway 5J108-111] gi|165916719|gb|EDR35323.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii RSA 334] Length = 430 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 48/456 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L++ V++K+ SLT LL ++ +Q L++ + TLR+ ++ Sbjct: 1 MNTRATAAILVNQVVQKKRSLTALLSA----------NKNNQSLIQELCYGTLRWYFKLK 50 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + +L + L K + + L+ Q+ YL++ + +V+ V A+ K+ L+ Sbjct: 51 LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N +LRR EK + I G P WF + ++ + + I++ P+ + Sbjct: 110 NKLLRRFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLR 169 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + K E + L+ + + P S+ LPGF EG ++QDA+ Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289 L NN +VLD CAAPG KT+ ++ + A+D +K+RL +++ N+ RL L Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289 Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 E + + + +LFD +L+DAPCS+TG IRRHPD+ R DI + + Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +LL + +K GG +++S CS+ ++E+V+++ L + VEL P N Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +++ + DGF+ L + Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428 >gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1346] Length = 459 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 113/469 (24%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + R ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNTGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 415 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 100/452 (22%), Positives = 183/452 (40%), Gaps = 51/452 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR+ + L + + L E + +D+ L+ IV TL+ Sbjct: 1 MNARMFAYTALCQICIHKTYSNLYLRKELDKA-----EHKDKGLITTIVYGTLQNYRLCR 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123 + ++ + LL +S Q+ Y+D YA+++ AVE AK+ + A L Sbjct: 56 YQWEDMVQKLPKEETAV---LLDMSAYQLFYMDKLPAYAIINEAVEIAKKHGGKKQGA-L 111 Query: 124 VNSILRRVSREKIELLQRIA-----GISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN++L +V + L + A + P+W + + YG+E AI ++ + Sbjct: 112 VNAVLHKVMQRGQRELPKDALQKLAIKTSHPDWLIKMWKAQYGEETCRAICESNMETRKQ 171 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 V E + N + + S+ + +G+ +QD ++ + Sbjct: 172 CARVNLMRMSREELLAQDNQFTVGQLASSVYYQGTSLAHTSWYVDGMLSIQDEASQLVAY 231 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 +LD+CAAPG K+ + + ++ D+ + R+E ++ DRL L++ Sbjct: 232 CVDPQPKERILDVCAAPGTKSTHMAELMQDEGEIICGDIHEHRVELIQQGADRLQLHSIH 291 Query: 293 IIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 I MDA + FD VL D PCS G + R D+ + ++D+ Q +L + Sbjct: 292 PIVMDATELHGLQEASFDRVLCDVPCSGYGVLARKSDIKYHMQSEDMDTLIPLQAAILEK 351 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + VK GGI+V+S C+L+K+++E+ V+K L+ + Sbjct: 352 ASTMVKQGGILVYSTCTLNKKENEKQVEKFLKKHEEFTLVS------------------- 392 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 I G DGF+ + + Sbjct: 393 ---------QRTIFPFEFGSDGFYMAKMEKKA 415 >gi|58040030|ref|YP_191994.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H] gi|58002444|gb|AAW61338.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H] Length = 447 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 136/437 (31%), Positives = 214/437 (48%), Gaps = 29/437 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ ++ V+ R L LD + RD+ + TLR L + Sbjct: 39 PTRDLAFDIVCGVVEHRRMLETTLDRAGA------MDARDRASAHRLAATTLRHLGSMTE 92 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L +L P ++ L + VAQ+L+L+ +A V V+ +R + FA L N Sbjct: 93 LLQPLLRREPPE---PVRCALLMGVAQLLHLETPPHAAVGTIVDLLRR-RGLAPFAGLAN 148 Query: 126 SILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LRRV+RE ELL +P W R AIS +DLT++ Sbjct: 149 AVLRRVAREGQELLDGLDEDRLDVPPWLWSAWGK-----RARAISRGLHREAPLDLTLRP 203 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A + G I +L GF +G +W QD +A++PV+L G + + Sbjct: 204 G----AVAPEGGEVLPTGSVRYPAGTRITTLEGFEDGAFWAQDVAATMPVKLMGDVAGKT 259 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 V+DLCAAPGGKTAQL +GA V A++ + R ++L N+ RL L A+ + DA + P+ Sbjct: 260 VVDLCAAPGGKTAQLATAGAHVVAVEREEARAKRLEENIVRLKLSAKTV-VADAATWRPQ 318 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 D VL+DAPCS+TGT+RRHPDVLW + D+ A Q L+ +KPGG+++++ Sbjct: 319 TPVDMVLLDAPCSATGTLRRHPDVLWIKRPRDVTALAEGQDALIDAAHEMLKPGGVLLYA 378 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL ++ E ++ + + + + DMA+A + +G R P + ++ Sbjct: 379 VCSLQDEEGPERIKAAIARGGWKFD----PFSEAELADMAVARTWDGMFRTHPGLWSEL- 433 Query: 425 GVSSGMDGFFAVALRRL 441 GMDGFFA L ++ Sbjct: 434 ---GGMDGFFAARLIKV 447 >gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322] gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322] Length = 459 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 111/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RL++ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLNVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium marinum M] gi|183175555|gb|ACC40665.1| Fmu protein [Mycobacterium marinum M] Length = 481 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 107/463 (23%), Positives = 172/463 (37%), Gaps = 46/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + + L V + +L + R ++ RD + R +DA Sbjct: 39 PARGAAFNALRAVSERNAYANLVLPALLRE---RGITGRDAAFATELTYGACRARGLLDA 95 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 96 IIGAAAGRSPEAIDPVLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 154 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISD 170 ++LR ++ + A + P W + + G A+ Sbjct: 155 AVLRTIADRDEQSWVQELAPDPRRDPVGHAAFVHAHPRWIAQAFADALGPSAAELDAVLA 214 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + A ++ + + L L +G VQD Sbjct: 215 SDDERPQVHLAARPGVLTAAALADEVRGTVGRYSPYAVYLLGGDPGLLAPVRDGQALVQD 274 Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA + +GA+VTA++ S R + + Sbjct: 275 EGSQLVARALTLAPVEGDSGRWLDLCAGPGGKTALLAALGVATGARVTAVEPSSHRADLV 334 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N D++ D + +FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 335 ADNT---GGLPVDLVRGDGRYTDLEPVFDRVLVDAPCTGLGALRRRPEARWRRQPSDVPT 391 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 QR+LL I+ +PGG+V+++ CS ++ VV LR P V Sbjct: 392 LVKLQRELLAAAINLTRPGGVVLYATCSPHLAETVGVVADALRRHP-----VDALDTRAL 446 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L ++++ P G D FA ALRR Sbjct: 447 FEPITEGLGEGPYVQLWPH--------RHGTDAMFAAALRRRA 481 >gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98] gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98] gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0043] Length = 459 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLVQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVTNE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola DG893] gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola DG893] Length = 433 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 122/450 (27%), Positives = 198/450 (44%), Gaps = 37/450 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G R V++ ++ V SL+ L GD ++ ++ ++A+ T R+ R+ Sbjct: 5 GQPLRAVAARVMQSVE-NGQSLSQCLPHAMGD-----VADNERPPLQALCYGTCRWFHRL 58 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D L L L + + L+ V++ Q+ + A YA+++ VE A R + H L Sbjct: 59 DGELQARLNKPLRKSNRVVHHLMLVALFQLRFSQQATYAILNETVE-ACRALDKPHLTGL 117 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTV 182 VN +LR RE L AG P W E+L + + + + ++ +P+ + + Sbjct: 118 VNGVLRAAEREGEPPLADEAGRFSHPLWMLEKLRHNWPHDWQAILETNNTQAPMTLRVNA 177 Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235 +F + + L+ + P + LP F+EG VQD +A + Sbjct: 178 LRFSRDDYLQLLSDAGIDAKATLFAPHGIQLTAPVPVDLLPWFSEGAVSVQDEAAQLCTT 237 Query: 236 LFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE- 291 L VLD CAAPGGKT + +V A+D S RL +++ NL+RL L A Sbjct: 238 LMDLAPGQRVLDACAAPGGKTCAILESCGELEEVVAIDESADRLPRVQENLERLDLMATL 297 Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D + +K FD +L+D PCS+TG IRRHPD+ R DIV A Q LL Sbjct: 298 KQADAADIDQWWDRKPFDRILLDVPCSATGVIRRHPDIKLLRRESDIVPLASIQLGLLES 357 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + PGG +V++ CS+ Q++ ++++ L+ + P D+ E Sbjct: 358 MWQVLAPGGRLVYATCSVFPQENHRIIRRFLKQQDNAALVEP---------DVLWGRDME 408 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P V DGFF L + Sbjct: 409 TGRQMLP--------VPESHDGFFYAVLEK 430 >gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays] gi|219888225|gb|ACL54487.1| unknown [Zea mays] Length = 555 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 115/478 (24%), Positives = 187/478 (39%), Gaps = 60/478 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAF-------------RLLSQRDQILVRAIVN 54 R V+ L + + + + L + R L RD LV IV Sbjct: 90 RAVAVVRLLRIEKGKAFVDLLNEKANDSGDKEIGYVQRTLGFSTRYLEDRDIRLVTVIVA 149 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 T+R+ +D ++ + + L Q+LR+ +IL LDV YA VD V AK Sbjct: 150 GTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLDVPAYAAVDENVRLAK 209 Query: 113 RDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLEN 158 +VN+ILR+ + + + ++ I P W R Sbjct: 210 VALRP-GAGNMVNAILRKLVLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWIR 268 Query: 159 FYGKERVLAISDACISPLYIDLTVKFD----------IETWAHKLNAVMLPTGGIRLKEL 208 F+GK+ L + + S + L V + +R++E Sbjct: 269 FHGKDEALRLMNWNNSDPHFSLRVNTSKGYTRADLVKRLESLQVHYEESIMDEFVRIREG 328 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAK 265 + ++ +G+ VQD SA + V + +++D CAAPGGKT + K Sbjct: 329 MQQVLKAGLLKDGICAVQDESAGLVVSVVDPQPGETIVDCCAAPGGKTLFMASRLSGEGK 388 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTI 322 + ALD++K RL L L I D Y + +D VL+DAPCS G + Sbjct: 389 IWALDINKGRLRILMDAAKLHGLDDMITDIHADLRLYAKETTVKYDKVLLDAPCSGLGVL 448 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 + D+ W R +++ + C Q +LL VKPGGI+++S CS+D +++EE + ++ Sbjct: 449 SKRADLRWNRQFENLEELMCLQDELLDSASMLVKPGGILIYSTCSIDPEENEERITAFVQ 508 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P ++ EG+ + MDG FA L R Sbjct: 509 RHPEFA------LQSVCGYVPREFITDEGFY--------SSNPTKHSMDGAFAARLVR 552 >gi|153209759|ref|ZP_01947497.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii 'MSU Goat Q177'] gi|212217708|ref|YP_002304495.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154] gi|120575262|gb|EAX31886.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii 'MSU Goat Q177'] gi|212011970|gb|ACJ19350.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154] Length = 430 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 48/456 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L++ V++K+ SLT LL ++ +Q L++ + TLR+ ++ Sbjct: 1 MNTRATAAILVNQVVQKKRSLTALLSA----------NKNNQSLIQELCYGTLRWYFKLK 50 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + +L + L K + + L+ Q+ YL++ + +V+ V A+ K+ L+ Sbjct: 51 LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N +LRR EK + I G P WF + ++ + + I++ P+ + Sbjct: 110 NKLLRRFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARHPMTLR 169 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + K E + L+ + + P S+ LPGF EG ++QDA+ Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289 L NN +VLD CAAPG KT+ ++ + A+D +K+RL +++ N+ RL L Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289 Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 E + + + +LFD +L+DAPCS+TG IRRHPD+ R DI + + Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +LL + +K GG +++S CS+ ++E+V+++ L + VEL P N Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +++ + DGF+ L + Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428 >gi|312863023|ref|ZP_07723261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus vestibularis F0396] gi|311100559|gb|EFQ58764.1| ribosomal RNA small subunit methyltransferase B [Streptococcus vestibularis F0396] Length = 442 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 200/452 (44%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ S L+ +D+ LV IV T+ ++ + Sbjct: 11 ARGQALEVLEEVFQEGAYSNIALNAHLSKS---YLTDKDKALVTEIVYGTVARKITLEWI 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KLVN Sbjct: 68 LAHVIE-DRDKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAKNRGNKKGAEKLVN 126 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ E + +R + +P W ++L + YG++R LAI + + Sbjct: 127 AVLRKLSIQPLPDPSEIKRVNKRYSVQYSLPVWLVKKLIDQYGEKRALAIFQSLFVRNKA 186 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A A + L + F EG+ +QD ++ + Sbjct: 187 SVRVTDASRLEEIAEATGAERSVLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 246 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 G +LD CAAPGGKT + ++ VTALD+ +L + N RL L Sbjct: 247 LGIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLVLIEENAQRLGLADKVKT 306 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + +D D Q +L Sbjct: 307 QKLDASQVHQVFPTDSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFESLKSVQLDILSS 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L S P E V L+ + Sbjct: 367 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHP-DFEQVALDHP-------CKDIVVN 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G + ITP+ DGFF LR+ + Sbjct: 419 GCLAITPEQYL--------TDGFFIAQLRKKV 442 >gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TUSoD Ef11] gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus sp. 7L76] gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TUSoD Ef11] gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX2141] Length = 459 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDPVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHCVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITPEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|28199632|ref|NP_779946.1| hypothetical protein PD1761 [Xylella fastidiosa Temecula1] gi|182682377|ref|YP_001830537.1| sun protein [Xylella fastidiosa M23] gi|46396863|sp|Q87AR1|RSMB_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|28057747|gb|AAO29595.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632487|gb|ACB93263.1| sun protein [Xylella fastidiosa M23] gi|307578659|gb|ADN62628.1| sun protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 431 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 127/452 (28%), Positives = 197/452 (43%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G+ R+V++ +L+ V+ + SL L RD+ LV AI LR Sbjct: 1 MSDGIAPRVVAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P +A L L L R L+ LL V AQ+ L V YA + V+ A R H Sbjct: 57 PVYEAALTRWLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHR 115 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYID 179 VN++LRR RE++ ++ A P W ER+ + + + + +P+++ Sbjct: 116 VSFVNAVLRRAQRERLPVVSSDAAW---PRWLAERIRADWGEQAEAIFDASLKPAPMWLR 172 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + D T+ +L A L L +V LPGF G VQD SA Sbjct: 173 VNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSVPVVQLPGFQGGEVSVQDLSAQQ 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L + +LD CAAPGGK A +TALDV +RL ++ DR+H+ A Sbjct: 233 VAALLSPAPHARLLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKA 292 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D + + FDAVL+DAPCS+TG +RR PDVL R +D++ Q +LL Sbjct: 293 RLCVADATDLAAWWDGEPFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLLNIQSRLL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG++V+ CS+ + +++ ++ L + P ++ + Sbjct: 353 DACWRTLRPGGVLVYVTCSVLRAENQTQLEAFLARTADACAEDPGDAYGQPA-------- 404 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G DGFF L + Sbjct: 405 ---------GLGRQRLPGEQGGDGFFYARLIK 427 >gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1272] gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1272] Length = 387 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 178/401 (44%), Gaps = 37/401 (9%) Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D L L + ++ LLR+S+ Q+LYLD V + A + AVE AKR + ++ + Sbjct: 2 DYYLQPFLRKKVE---AWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGISG 57 Query: 123 LVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +VN +LR + RE + ++R+A + P W + + YG E + + + P Sbjct: 58 MVNGVLRSIQREGVPSLEEIKDPVERLAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLP 117 Query: 176 LYIDLTVKFDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 V D T + A ++ ++ F +G +QD Sbjct: 118 PVPTARVNVDKVTVEEAIGLLANEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQD 177 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + + VLD CAAPGGKT + KV +LD+ ++ +R D Sbjct: 178 ESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQAD 237 Query: 285 RLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL L + +D ++ + FD +LVDAPCS G IRR PD+ +D D + + Sbjct: 238 RLGLENVETKALDARKVQEHFENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLS 297 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +K GG +V+S C+++K ++E+V+++ L+ P E + + Sbjct: 298 TIQFAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMP 354 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG ++I P DGF+ LR+ + Sbjct: 355 EKLSPYIDEGQVQILPHYFA--------TDGFYIACLRKKV 387 >gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus communis] gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus communis] Length = 527 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 109/479 (22%), Positives = 180/479 (37%), Gaps = 61/479 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDS-------------AFRLLSQRDQILVRAIVN 54 R VS+ L + L + G + L RD LV +V Sbjct: 62 RAVSAVRLMRIEMGGAFADLLNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDVVG 121 Query: 55 VTLRFLPRIDAVLDF--VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 T+R+ +D ++ ++ + L Q+LR+ +I+ LD+ YAVVD V AK Sbjct: 122 GTIRWRRFLDHLICSLFHDENTFRSMEPLLLQILRIGAYEIVKLDMPPYAVVDENVRLAK 181 Query: 113 RDKENRHFAKLVNSILRRV--------------SREKIELLQRIAGISIIPEWFKERLEN 158 +VN ILR++ + + +A + P W R Sbjct: 182 VALRP-GAGNMVNGILRKLVLLKENNSLPLPKLEGDARAQARALATLHSHPVWMVRRWTK 240 Query: 159 FYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAV-------MLPTGGIRLKE 207 + G+E + + S L + +LN + +R++ Sbjct: 241 YLGQEEAIRLMIWNNSDPSFSLRANGGKGVTRDDLVTRLNLLKVPYELSPYSDHFVRMRT 300 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264 + ++ EG VQD SA + V + S++D CAAPGGKT + + Sbjct: 301 GLQIVLQAGLLKEGFCSVQDESAGLVVSIVNPQPGDSIIDCCAAPGGKTVYMASLMEGQG 360 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGT 321 V A+D++K RL L+ + D VL+DAPCS G Sbjct: 361 MVYAIDINKGRLRILQETAKLHQIDGVITAVPSDLRVLAENYPMKSDKVLLDAPCSGLGV 420 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + D+ W R +D+ + Q +LL + VKPGG +V+S CS+D +++EE V L Sbjct: 421 LSKRADLRWNRRVEDLEELKNLQDELLDAASTLVKPGGFLVYSTCSIDPEENEERVDAFL 480 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P ++ P++ + V +DG FA L + Sbjct: 481 LRHP-EFQIDPVDRYVPPDLVTERG-------------FYSSSPVKHSIDGAFAARLVK 525 >gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group] gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group] gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group] gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group] Length = 570 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 122/479 (25%), Positives = 191/479 (39%), Gaps = 62/479 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53 R V++ L + + + + LL+ + S L RD LV IV Sbjct: 105 RAVAAVRLLRIEKGKAFVD-LLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIV 163 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 T+R+ +D ++ + + L Q+LR+ +IL L+V YA VD V A Sbjct: 164 AGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLA 223 Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157 K LVN+ILR+ + + + ++ I P W R Sbjct: 224 KVALRP-GAGNLVNAILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 282 Query: 158 NFYGKERVLAISDACISPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKE 207 F GKE L + S + + V D +R++E Sbjct: 283 RFLGKEEALKLMKWNNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKSTMDEFVRIQE 342 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264 ++++ EG+ VQD SA + V + +++D CAAPGGKT + Sbjct: 343 GMQTVLQAGLLKEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQG 402 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 K+ ALD++K RL L +L A I D Y + FD VL+DAPCS G Sbjct: 403 KIWALDINKGRLRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGV 462 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + D+ W R +D+ + C Q +LL VKPGGI+V+S CS+D +++E + + Sbjct: 463 LSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFV 522 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P V A ++ EG+ +DG FA L R Sbjct: 523 QRHPDFV------LQSVHGYVPAEFVTDEGFY--------SSSPTKHSIDGAFAARLVR 567 >gi|92114986|ref|YP_574914.1| sun protein [Chromohalobacter salexigens DSM 3043] gi|91798076|gb|ABE60215.1| 16S rRNA m(5)C-967 methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 433 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 125/451 (27%), Positives = 195/451 (43%), Gaps = 40/451 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R V + L+ ++ + SL+ L L RD+ +A+ R LPR+ A+ Sbjct: 2 RAVCASALAPLLDGKGSLSAL----DAHLDTASLDGRDRAFAKALCYGVCRTLPRLQALA 57 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 +L R+ +Q LL + + Q+LY+ V +A V A+ + +++N Sbjct: 58 KLLLRQPFKRRDLDVQALLLIGLYQLLYMRVPAHAAVGETAGAARGLGKG-WATRVLNGC 116 Query: 128 LRRVSREKIELLQRIAGISI----IPEWFKERLENFYGKER-VLAISDACISPLYIDLTV 182 LRR R+ L ++ PEW + + LA ++ C P+ + + V Sbjct: 117 LRRFQRDTQTLQAQVDRDPSVALLHPEWMLTEWRQAWPDDWRALAEANNCPGPMTLRVNV 176 Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQ 235 + D + + +L L P + +LPGFAEG VQD +A + Sbjct: 177 RQGDRDAYLARLEDAGLSASPTPFAPQGLTLAEPCDVRALPGFAEGAVSVQDEAAQLAAT 236 Query: 236 LFGTL----NNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L VLD C+APGGKTA L +TALD RL+++ L+RL L A Sbjct: 237 LLAPCLAERPGARVLDACSAPGGKTAHLLEAFDIDLTALDSDAERLDRVNATLERLGLDA 296 Query: 291 EDIIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + FDAVL+DAPCS TG IRRHPD+ R DI + A Q +LL Sbjct: 297 TTIAADASHHAWWDGHAFDAVLLDAPCSGTGVIRRHPDIKRLRRPRDIRELAALQARLLD 356 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + PGG ++++ CS+ +++ + V L +P A ++I+ A Sbjct: 357 AAWHTLAPGGTLLYATCSVMPEENADQVAAFLARTPD---------ARAETIEAAWGRPA 407 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P G DGFF LR+ Sbjct: 408 GDGRQLLP--------RIDGHDGFFYARLRK 430 >gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680] gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680] Length = 476 Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 163/468 (34%), Gaps = 44/468 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R ++ L V + +L + + RD L +V TLR D Sbjct: 22 PVRFLAFEALRAVDERDAYANLVLPPLLRKARQKGDFDGRDAALATELVYGTLRRQGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + V Q+L + +A V +VE A+ + AK V Sbjct: 82 AVIAACVDRPLREVDPPVLDVLSLGVHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 140 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V++ ++ +A + P W L + G R + Sbjct: 141 NAVLRKVAQHDLDGWLEQIAPPYDDDAEDHLAVVHSHPRWVVSALWDALGGGRAGIEDLL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 +A + L + T L + + ++ EG Sbjct: 201 EADNERPEVTLVARPGRSTAGELLGVLGEESALPGRWSPYAVRLTEGGEPGAIDAVREGR 260 Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKR 274 VQD + + + LD CA PGGK A GA + A + Sbjct: 261 AGVQDEGSQLVALALANAPLDGPDQAWLDGCAGPGGKAAMLAGLAAERGAVLLASEKQPH 320 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + I FD VL+D PC+ G +RR P+ W R Sbjct: 321 RAGLVAKALAGNPGPYQVIAADGIRPPWRPGTFDRVLMDVPCTGLGALRRRPEARWRRRP 380 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 +D+ A QR LL + V+ GG+V ++ CS ++ VV VL+ + EL+ Sbjct: 381 EDLDGFAPLQRGLLRTALDSVRVGGVVGYATCSPHLAETRAVVDDVLKHHTVAAELIDAR 440 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +++ P + G D + +RR Sbjct: 441 PLLPGVPALGEGPD----VQLWPHL--------HGTDAMYLALIRRTA 476 >gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] Length = 427 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 94/435 (21%), Positives = 166/435 (38%), Gaps = 39/435 (8%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 D R + R +V R +D VL ++ LQ++LR+ Sbjct: 5 DAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGEAYHGDYDSMEHRLQEILRLG 64 Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI------- 142 + ++L+ +A VD VE AK+ LVN +LR + R++ + Sbjct: 65 LYELLFQSTPTHAAVDEYVELAKQALRP-GAGNLVNGVLRTIDRDREHIPTPDTGDDAND 123 Query: 143 -AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNA 195 A P W +R + +G + + A + + D+ W + + Sbjct: 124 LALRYSHPTWMVQRWLDRFGLDETTELLRANNRRPMYSVRINPLRTSEADVAAWLDEHDV 183 Query: 196 VMLPTGGIRLKELPESIVSL---PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 V + + + + + +L +G VQD SA + VQL +++D CAAP Sbjct: 184 VNVDSPYLDRYLRLKRLQALIAGDLLDDGHVAVQDESAGLVVQLLDPQPGETLIDGCAAP 243 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMD---AFDYCPKK 305 GGK + + A+D ++RLE++ + + D Sbjct: 244 GGKAMHAAARMEGTGTIYAVDRDEQRLERVETAAEAQGASEMVEAETADLRAWAARPEPP 303 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 D VL+D PC+ G + + + W R +D+ + A Q +LL V+PGG++V+S Sbjct: 304 QGDRVLLDVPCTGMGVLAKRAGLRWRRSMEDLEEMAELQDELLDAAAQLVRPGGLLVYST 363 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+ + +++E V+ L + +S G++ P Sbjct: 364 CTTEPEENERRVEAFLARHDGFAVESA------EGHVPDEMVSDAGFLATFPH------- 410 Query: 426 VSSGMDGFFAVALRR 440 MDG FA LRR Sbjct: 411 -RHRMDGAFAARLRR 424 >gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group] Length = 570 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 122/479 (25%), Positives = 191/479 (39%), Gaps = 62/479 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53 R V++ L + + + + LL+ + S L RD LV IV Sbjct: 105 RAVAAVRLLRIEKGKAFVD-LLNEKGNSSGENEMSYVERTLGFSIRCLDNRDIRLVTVIV 163 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 T+R+ +D ++ + + L Q+LR+ +IL L+V YA VD V A Sbjct: 164 AGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLNVPAYAAVDENVRLA 223 Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157 K LVN+ILR+ + + + ++ I P W R Sbjct: 224 KVALRP-GAGNLVNAILRKLLLLKEANSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 282 Query: 158 NFYGKERVLAISDACISPLYIDLTVKF----------DIETWAHKLNAVMLPTGGIRLKE 207 F GKE L + S + + V D +R++E Sbjct: 283 RFLGKEEALKLMKWNNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKSTMDEFVRIQE 342 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264 ++++ EG+ VQD SA + V + +++D CAAPGGKT + Sbjct: 343 GMQTVLQAGLLKEGMCAVQDESAGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQG 402 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 K+ ALD++K RL L +L A I D Y + FD VL+DAPCS G Sbjct: 403 KIWALDINKGRLRILMEAAKLHNLDAMISDIHADLRLYAKETTATFDKVLLDAPCSGLGV 462 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + D+ W R +D+ + C Q +LL VKPGGI+V+S CS+D +++E + + Sbjct: 463 LSKRADLRWNRQFEDLEELMCLQDELLDSASMLVKPGGILVYSTCSIDPEENEHRIAAFV 522 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P V A ++ EG+ +DG FA L R Sbjct: 523 QRHPDFV------LQSVHGYVPAEFVTDEGFY--------SSSPTKHSIDGAFAARLVR 567 >gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A] gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A] Length = 448 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 113/467 (24%), Positives = 188/467 (40%), Gaps = 60/467 (12%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G++AR + ++ V L+ + +F+ + D+ L+ + +R Sbjct: 11 KGLDARKAAWEVIQAV-GGGSFADVALERIFNLYSFKSI---DKALITELSYGAIRQRYY 66 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 +D +D + ++ L+ LL + + Q+L + + A ++ VE AK R A Sbjct: 67 LDCWIDHLGKVPAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAKTHHL-RKLA 125 Query: 122 KLVNSILRRVSREK---------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR R K +A +P WF E L + G E I+ A Sbjct: 126 PVVNGILRSALRSKERGLLLPKSNNPSLELAKNESLPVWFAEELIAWKGVEHAQQIAKAF 185 Query: 173 ISPLYIDLTVKFDIETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 S ID+ V + + G+ ++ PG+ EG Sbjct: 186 NSVSPIDIRVNKLRADLKDVKELFDTCGIQNQLIPNCPSGLEVRAGIGEPRQWPGYEEGK 245 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 W VQD S+ + G L +LD CAAPGGK+ + I + + ++D S RR +K+ Sbjct: 246 WSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTHIAELINNEGNLWSVDRSSRRSKKI 305 Query: 280 RCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 N +RL I+ D+ K FD +L+DAPCS GT+ RHPD W + Sbjct: 306 LANSERLGTKCLQILVADSNELLLKKPDWKGFFDRILIDAPCSGLGTLARHPDARWRMNQ 365 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D+I + Q +LL +K GG +V+S C++ +++ ++ L+S + Sbjct: 366 DNIQQLVAVQSQLLNSLAPLLKNGGKLVYSTCTIHPEENSHQIKNFLQSKSEFLL----- 420 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +I P DGF+ L +L Sbjct: 421 ---------------EYEKQIWPGEG-------DNGDGFYIAVLNKL 445 >gi|331004329|ref|ZP_08327804.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411395|gb|EGG90810.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon 107 str. F0167] Length = 444 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 99/456 (21%), Positives = 199/456 (43%), Gaps = 31/456 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N R + +L + ++ ++D+ + LS+ D+ V+ + + Sbjct: 1 MEK-TNIRALVLEVLLLINVEKEYSHKVIDMALE--KYSYLSKSDRGFFSKAVHGVIEYR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D ++ ++ R K ++++LR+S+ Q+LY+D V D AV++ AV K + Sbjct: 58 LQLDYIIKKY--NNGKRIKPVIREILRMSIYQMLYMDRVPDRAVINEAVNLVK-LRRLPG 114 Query: 120 FAKLVNSILRRVSREKIELLQRI-AGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 VN ILR++S EK +++ + +PE +++ G + + Sbjct: 115 LTGFVNGILRKISGEKDKIVFDDLSIKYSMPEPVLNIIKDNTGDYFEETLDYFLKIKP-V 173 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---------GVWWVQDAS 229 + V + + + + + L I+ + GF + G ++ DAS Sbjct: 174 SIRVNTSKSSVKDIIKELEDENIRVDISNLNTDILYISGFDKVDEISVIKSGKAYITDAS 233 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 +S+ +L T N +D+CAAPGGK+ ++ K+ + D+S ++ ++ N + Sbjct: 234 SSMISKLIETKNIKKCVDVCAAPGGKSFLLADKLLKDTKIYSCDISDNKVNIIKENANIQ 293 Query: 287 HLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + DA + K D VL D PCS G I + PD+ + + D+ A Q+ Sbjct: 294 GFENIIPMIADARSFDEKFLDADIVLADLPCSGIGIIGKKPDIKYRLEEDNFNSLAALQK 353 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDMA 404 ++L + +VK G ++FS C+L+++++EE + L + L + Sbjct: 354 EILDNVVGYVKKDGELIFSTCTLNRKENEENMLYFLEKHRDFKAVDLSLRLDKRVVEKLN 413 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +G++++ P DGFF RR Sbjct: 414 ESELKKGYLKLIPG--------RDDCDGFFIAVFRR 441 >gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 435 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 198/452 (43%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V + L+ + ++ +++ + I +R +D Sbjct: 1 MNVKKVAINLISQVD-RGAYSNIALNETFK---TLNVNSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D D VV E AK+ +K + Sbjct: 57 YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDDKGVVWEGTELAKKKYG-IPISKFI 112 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + + IP+WF LE YG E + + Y+ Sbjct: 113 NGTLRNYLRNKDLELKRLDDEKNYEVLYSIPKWFYNTLEKQYGNENLKQAITSLKKIPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I++ F G QDAS+ + Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + N VLD+CAAPGGKTA + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLDAMPNELVLDICAAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ +++ + A Q ++L Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENVEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++S C++ +++ ++K L + Y + S Sbjct: 353 NSAADILKDGGELIYSTCTITDEENTNNIKKFLEERKEF----KVEKLYIPENVLGDFDS 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G+ I+ MD F+ + L++ Sbjct: 409 LGGF---------CINYKEEIMDNFYIIKLKK 431 >gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus VCS1703A] gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus VCS1703A] Length = 418 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 118/445 (26%), Positives = 189/445 (42%), Gaps = 39/445 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR ++ L V+ +R SL LL L D+ L + +V TLR + Sbjct: 1 MKAREAAARTLFAVIEQRQSLNQLLPAF-----KNQLPDIDRALYQELVYGTLREYRSLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + +L L + +L + + Q+L L + D+ VV VE K+ + + L Sbjct: 56 FLHNRLLHQPLDKNPLPA-IILNLGIYQLLRLTLGDHGVVHETVELCKKLRCPA-VSGLT 113 Query: 125 NSILRRVSREKIELLQR--IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 N++LRRV RE+ LQ IP W + + + P+ + + + Sbjct: 114 NAVLRRVQRERSACLQILEENKARNIPAWLLPAYQKDGDVDAFIM-----RPPMTVRVRL 168 Query: 183 KFDIETWAHKLNA---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 W + A + + LP FA G VQDA A L Sbjct: 169 PQTATQWIAQHGANARLNPLHQQAVTFNQAIGVEDLPDFASGGVSVQDAMAQWAATLLQP 228 Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--IIE 295 +LD CAAPGGKT + + ALD + RLE+++ NL RLHL A Sbjct: 229 RAGERILDACAAPGGKTGHLLELAPQCTLIALDHAADRLERVQENLKRLHLNAHCQTADA 288 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D + FDA+L+DAPCS +G IRRHPD+ W R D+ + Q +LL + Sbjct: 289 ADLASWYDGHAFDAILLDAPCSGSGVIRRHPDIAWLRSDSDLKQLPKTQYRLLDTLWQTL 348 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG ++++ CS+ +++++++++ L + +L P+ + GW+ Sbjct: 349 KIGGRLLYTTCSILPRENQQLIEQFLYTH-REAQLRPITLPKGLD-------TGHGWLH- 399 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + G DGFF L + Sbjct: 400 --------YPDADG-DGFFYALLEK 415 >gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108] gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108] Length = 410 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 109/438 (24%), Positives = 184/438 (42%), Gaps = 58/438 (13%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88 +D +L +++D+ L +V+ LR+ I+ ++FV + + +LRV Sbjct: 1 MDSLMEKFHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKKGVK--DKRILNILRV 58 Query: 89 SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE---------- 137 + ++L+L+ + +YA V+ A E A + + H VN+ILR + R K + Sbjct: 59 ATYELLFLEKIPEYATVNEACEIASKI--SPHLKAFVNAILRNIIRNKNQIEESLERIKD 116 Query: 138 --LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHK 192 I+ P + + LE YG E+ L I + + + + D+ T + Sbjct: 117 VDYKSYISIKLSYPRFLIDYLEESYGLEKTLKILEFLNTKPPQSIKINTKKTDVSTLTQE 176 Query: 193 LNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSV 245 L + L +I + EG ++ QD ++S+ V Sbjct: 177 LEKNGFKYEINSHNNEIIHVLKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKV 236 Query: 246 LDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 +DLCAAPGGK V V A D+++ +L+ LR N+ RL + + DA + P Sbjct: 237 IDLCAAPGGKTFNCAEVIDGFVVACDINEHKLDILRENILRLGFDNIIVAKSDAEVFNPD 296 Query: 305 K--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD V+ D PC+ G IR+ PD+ W + D+ Q ++L ++K GG++ Sbjct: 297 FAEKFDIVIADLPCTGFGAIRKKPDIKWNKSYQDVENLHELQVRILDNAAGYLKKGGLLF 356 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+L ++++EE V K L LV I I PD Sbjct: 357 YSTCTLSRKENEETVLKFLDKH-RDFSLVSQ-------------------ITIFPDEF-- 394 Query: 423 IDGVSSGMDGFFAVALRR 440 DGFF LR+ Sbjct: 395 ------NCDGFFISKLRK 406 >gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus lacrimalis 315-B] gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus lacrimalis 315-B] Length = 430 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 105/456 (23%), Positives = 194/456 (42%), Gaps = 49/456 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + ++ V K L L++ +S RD ++ I +R +D Sbjct: 3 NIRQKALFIIDNVYNKGAFLEEQLNII----KQSNISDRDFTFIKNITTGVIRNRTYLDY 58 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V+ + + +L +++ Q +LD + +Y++VD +V+ AK N+ + V Sbjct: 59 VIKINSKIRFKKIHKIIAIILEMAIYQYYFLDKIPNYSIVDESVKLAK-LYGNKGSSSFV 117 Query: 125 NSILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177 N+ILR + + E+++ + P+++ + YG E + A Sbjct: 118 NAILRNIVSKDKEVVKIEDSIENLSVYYSHPKFYTKYFYENYGVELTKNLLKANNQEPDF 177 Query: 178 -IDLTVKFDIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASA 230 I + + +KL + E P++I F EG ++ QD S+ Sbjct: 178 VIRVNTLKTKKDHLYKLLKDENFNVIDGLVPDSLIIENPKNIFDTQAFREGFFYAQDFSS 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 Q+ N ++LDLCAAPGGK+ ++ + ++ A D S +L+ ++ N RL Sbjct: 238 IKVSQILNPKKNSTILDLCAAPGGKSTHLGAILENTGQIVACDKSLYKLDLIKDNAKRLG 297 Query: 288 LYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D ++ + FD LVDAPCS+ G R+ PD+ W R +DI A Q+ Sbjct: 298 VSNIKVSINDASKYNNDFEDKFDYCLVDAPCSAIGLYRKKPDIKWNRSLEDIKNLAQIQK 357 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++ +VK GG++++S CSL ++E V+++ L + L Sbjct: 358 NIINNAGRYVKKGGVLIYSTCSLSYSENEGVIKEFLDRNKNYKIL--------------- 402 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +++ P DGF L+RL Sbjct: 403 TIEGKDILKLFP---------FDNYDGFSICKLQRL 429 >gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311] gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311] Length = 449 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 111/465 (23%), Positives = 187/465 (40%), Gaps = 61/465 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K G+ AR ++ +L V L+ + LS D+ L + +R+ Sbjct: 12 KIGLPARRLALEVLEAV-AAGAYADVALERALRQNP---LSPADRGLATELAYGCIRWRQ 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +D LD + ++ L+ LL + + Q+L + + A VD VE AKR + ++ Sbjct: 68 WLDGWLDRLGKVPAHKQPPRLRWLLHLGLYQVLRMQRIPASAAVDTTVELAKRQRLSK-L 126 Query: 121 AKLVNSILRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + +VN +LR + +R+A +P WF E L ++ G ++ ++ A Sbjct: 127 SPVVNGVLRSALRAKEAGETLPVPDQSAERLALCHSLPVWFAESLLSWSGPDKAERVAVA 186 Query: 172 CISPLYIDLTV---KFDIETWAHKLNAVML-------PTGGIRLKELPESIVSLPGFAEG 221 C +DL V + A +L A + G+++ + PGF +G Sbjct: 187 CNQVPPLDLRVNRLCSSPDLVAAELAAAGVPTKPIDACPDGLQVLAPAGDLRRWPGFEQG 246 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQD SA L +LD CAAPGGK L + G ++ A+D S RL++ Sbjct: 247 HWSVQDRSAQGVAPLLAPRPGDRILDACAAPGGKATHLAELMGDGGEIWAVDRSAGRLKR 306 Query: 279 LRCNLDRLHLYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + + D + F +L+D PCS GT+ RHPD W Sbjct: 307 VAANAARLGCGSIHALAADATNLLEQQPEWRGFFQRILLDVPCSGLGTLSRHPDARWRVT 366 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + + Q +LL + + PGG +V++ C++ ++ V K+L+ Sbjct: 367 PATVEELLPLQAQLLAAMLPLLAPGGRLVYATCTIHPAENLAQVNKLLQDHAD------- 419 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 E + PD G DGF+ + Sbjct: 420 -------------FQLESEQQRWPD--------PEGGDGFYTAVI 443 >gi|313111462|ref|ZP_07797263.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas aeruginosa 39016] gi|310883765|gb|EFQ42359.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas aeruginosa 39016] Length = 434 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 117/455 (25%), Positives = 201/455 (44%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL + L+ V+ R SL+C L ++ RD+ L + + R+ PR+ Sbjct: 1 MNPRLAACQALAAVLAGRASLSCALP-----PQLDKVAPRDRGLTQELAFGAARWQPRLQ 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L + LL + + Q+LY + +A + V A + K+ ++ Sbjct: 56 ALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKG-WAKGVL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE E+ + + P W + L+ + E++ A+ A + + L Sbjct: 115 NAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 V + + + +L + P + LPGFAEG VQD +A Sbjct: 174 RVNRRHGERDAYLAELAEAGIEARACDYSRDGIQLAAPCDVRELPGFAEGRVSVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHL 288 + +L + VLD C APGGKT L+ + +V A+D+ + RL ++R NL RL L Sbjct: 234 LAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEESRLVRVRENLQRLGL 293 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A ++ K F +L+DAPCS+TG IRRHPD+ R +DI A Q + Sbjct: 294 QASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GG+++++ CS+ ++ + + L +P EL + Sbjct: 354 LLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAREL---------DLPGPWG 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ P + G DGF+ L ++ Sbjct: 405 MKQPHGRQLLPQV--------EGHDGFYYAKLIKI 431 >gi|256026704|ref|ZP_05440538.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11] gi|289764700|ref|ZP_06524078.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11] gi|289716255|gb|EFD80267.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11] Length = 435 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 100/452 (22%), Positives = 201/452 (44%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + ++ +L+S V K L+ + ++ +++ + I +R +D Sbjct: 1 MNVKQIAINLISQVD-KGAYSNIALNETFK---TLDINSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D + +V A E K+ +K + Sbjct: 57 YIIERYTK---EIKKEWIRNLLRISIYQITFMDSDNKGIVWEATELTKKKYGMT-ISKFI 112 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + + IP+WF + LE YG + + + Y+ Sbjct: 113 NGTLRNYLRNKDTELKRLDDEKNYEVLYSIPKWFYDILEKQYGDKNLKQAITSLKKVPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I+ F G QDAS+ + Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIIISEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + G L+N VLD+CAAPGGKTA + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIAIDIHQHKIKLIETNMKKLGID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ ++I + A Q ++L Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V+S C++ +++ + ++K L+ + +++ Sbjct: 353 NSAADILKDGGELVYSTCTITDKENTDNIEKFLKERKEFKV-----EKLYIPENVSGDYD 407 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I+ MD F+ + L++ Sbjct: 408 KLGGF--------CINYKEEIMDNFYIIKLKK 431 >gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 435 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 100/452 (22%), Positives = 197/452 (43%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V + L+ + ++ +++ + I +R +D Sbjct: 1 MNIKKVAINLISQVD-RGAYSNIALNETFK---TLNVNSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D D VV E AK+ +K + Sbjct: 57 YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDDKGVVWEGTELAKKKYG-IPISKFI 112 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + IP+WF + LE YG + + Y+ Sbjct: 113 NGTLRNYLRNKDLELKKLYDEKNYEVLYSIPKWFYDILEKQYGDNNLKQAITSLKKIPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I++ F G QDAS+ + Sbjct: 173 SVRVNKLKYSEEEFEEFLKERDIQIIKKIDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + N VLD+CAAPGGKTA + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLDAMPNELVLDICAAPGGKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ +++ + A Q ++L Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENVEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++S C++ +++ ++K L + Y + S Sbjct: 353 NSAADILKDGGELIYSTCTITDEENTNNIKKFLEERKEF----KVEKLYIPKNVLGDYDS 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G+ I+ MD F+ + L++ Sbjct: 409 LGGF---------CINYKEEIMDNFYIIKLKK 431 >gi|145594413|ref|YP_001158710.1| Fmu (Sun) domain-containing protein [Salinispora tropica CNB-440] gi|145303750|gb|ABP54332.1| Fmu (Sun) domain protein [Salinispora tropica CNB-440] Length = 509 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 101/462 (21%), Positives = 164/462 (35%), Gaps = 44/462 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ V R +L D L RD + TLR L +DA+ Sbjct: 63 PRHAAYQAVAAVHRDDAYANLVLPAILRD---AGLVGRDAAFATELTYGTLRRLGTLDAI 119 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + R ++ LR+ Q+L+ V +A V V+ + N+ Sbjct: 120 LTDAAGRDVARIDPPVRDALRLGAYQLLHTRVPAHAAVSATVDLVRSV--GPGATGFANA 177 Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171 +LR V+ ++ +A P+W G + + Sbjct: 178 VLREVASRDVDAWVARLAPPLETDPIGHLALAYSHPQWIVRAFAEALGGDLGETTRLLIE 237 Query: 172 CISPLYIDLTVKFDIET---WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L + A ++ + + LP EG VQD Sbjct: 238 DNERPPVHLCARPGRADPVALADEVGGAPGAFSPYAVYSGGGAPGDLPALTEGRAHVQDE 297 Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLR 280 + + + LDLCA PGGK A GA++TA++VS+ R + Sbjct: 298 GSQLVADALTVAPLDGPDGRWLDLCAGPGGKSGLLGAVAAQRGARLTAVEVSEHRARLVG 357 Query: 281 CNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L + D + + FD LVDAPC+ G++RR P+ W R D+ Sbjct: 358 QATRDLPVTVLNTDGRTVGETPKLAEGHFDRALVDAPCTGLGSLRRRPESRWRRQPSDLP 417 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 QR+LL G+ V+PGG+V + CS ++ V + R + +PV+ V Sbjct: 418 ALTRLQRELLSAGLRAVRPGGLVGYVTCSPHVVETHVTVTEAARRAGVPVDFVDARPLLP 477 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K + L +++ P G D F LRR Sbjct: 478 KGMP---GLGDGPTVQLWPH--------RHGTDAMFLAVLRR 508 >gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta proteobacterium NaphS2] gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta proteobacterium NaphS2] Length = 447 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 113/460 (24%), Positives = 204/460 (44%), Gaps = 39/460 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ L+ V L+ + + +S+RD+ +V LR+ R+D + Sbjct: 2 SRNLALKSLNSVTNAPGGAERRLEFLFSKNPH--ISERDRAFAVHLVQGVLRWQIRLDWI 59 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + +LR+++ QI++LD V D A V+ AV+QA + K +H A+ VN Sbjct: 60 LKQYVRFPFGKIDPEVLDILRLALFQIIFLDRVPDSAAVNEAVKQADK-KGRKHVARFVN 118 Query: 126 SILRRVS---------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 ILR++ + + + P W ++ G + L + + Sbjct: 119 GILRQICREKGQLPYPHSEKQRDFYRSVYHAYPMWLVKKWTRELGPDMALRLMETGNQTP 178 Query: 177 YIDLTVKF---DIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + + E +L AV GI L + S+ L F EG + VQ Sbjct: 179 RLVVRTNTLRNTREDLLERLEKENIEARAVPYAPEGIELTRVGGSVSRLRSFKEGRFQVQ 238 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 +A I +L + VLD+CA GGK+ + + + ALD S RL L+ N Sbjct: 239 GEAAQICARLLSPGKSHRVLDMCAGLGGKSTHMAQLMGDRGWILALDTSIPRLRGLKRNT 298 Query: 284 DRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +RL + + + DA C + +F +VD+PCS G I +HPD T+ DDI + A Sbjct: 299 ERLGIRSISPVVADATASLSCFRSVFHKSMVDSPCSGLGVISKHPDTKLTKKEDDIKRLA 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q+ +L + + GG +++ C++ ++++EEVV+ +LR + ++ + Sbjct: 359 MVQKSILFRSCEKLAAGGEMLYVTCTISEEENEEVVESILRKNN---RIIFQDLRQRIPA 415 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ G+ + P + GM+GFFA ++L Sbjct: 416 WGFDLVNDNGFFKTFPHV--------HGMEGFFAALFKKL 447 >gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5] gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1] gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis PC1.1] gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4248] gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5] gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1] gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis PC1.1] gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX4248] gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX0027] Length = 459 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 193/469 (41%), Gaps = 44/469 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDSVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 N RLH+ + + P + FD +LVDAPCS G +RR PD+ + + +D Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDAPCSGLGLMRRKPDIKYHKTAND 362 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 Q ++L +K GI+V+S C++ ++++EVV L P ++ + + Sbjct: 363 FQNLPKIQLEILESVAPTLKQWGIMVYSTCTITSEENQEVVAAFLAKHPEFEKIEIVANE 422 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + A+ E + + P DGFF +R++ + Sbjct: 423 NVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKVSSNE 457 >gi|260495441|ref|ZP_05815567.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_33] gi|260196978|gb|EEW94499.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_33] Length = 435 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 199/452 (44%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V K L+ + ++ +++ + I LR +D Sbjct: 1 MNVKQVAINLISQVD-KGAYSNIALNETFK---TLDINSKEKTFITEIFYGVLRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI +++ D VV A E K+ +K + Sbjct: 57 YIIERYTK---EIKKEWIRNLLRISIYQITFMNSDDKGVVWEATELVKKKYGMT-ISKFI 112 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + + IP+WF + LE YG + + Y+ Sbjct: 113 NGTLRNYLRNKDTELKRLDDEKNYEVLYSIPKWFYDILEKQYGDNNLKKAITSLKKIPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I++ F G QDAS+ + Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + N VLD+CAAPGGKTA + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLSVMPNELVLDICAAPGGKTAVLAEQMENKGEIIAIDIHQHKIKLIETNMKKLGID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ ++I + A Q ++L Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V+S C++ +++ + ++K L+ + +++ Sbjct: 353 NSAADILKNGGELVYSTCTITDKENTDNIEKFLKERKEFKV-----EKLYIPENISGDYD 407 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I+ MD F+ + L++ Sbjct: 408 KLGGF--------CINYKEEIMDNFYIIKLKK 431 >gi|323142778|ref|ZP_08077491.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas hippei YIT 12066] gi|322417423|gb|EFY08044.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas hippei YIT 12066] Length = 443 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 122/450 (27%), Positives = 196/450 (43%), Gaps = 40/450 (8%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G +R ++ +L+ V +SL+ L+ + L RD+ LV IV+ TLR + Sbjct: 19 GSQSRAAAAKILAGVE-TGLSLSDLMPRFTAE-----LDLRDRALVSEIVHGTLRHRRLL 72 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + L +L L K + LL ++ QI+++ +AVV V A + + F + Sbjct: 73 NLSLHPLLDHKLSSKYREVNTLLLSAIYQIVFMRTPPHAVVASTVG-ACALCKCQSFTGM 131 Query: 124 VNSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 VN++LRR RE ++ A P+W +++N YG ++ AI A + L Sbjct: 132 VNAVLRRFLREGAHLQHSTEEAIEFSFPDWLYNKIKNAYG-DKTKAILKASNEHAPMWLR 190 Query: 182 VKFDI---ETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASI 232 V+ + + L + + LP F G VQD +A + Sbjct: 191 VENSKIGTDDYLVLLEKCDIFAVRTPFCSSALQLEEPVITEKLPLFKRGRVSVQDLAAQL 250 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L + VLD C+APGGK+A ++ ++TALD ++RL + NL RL A Sbjct: 251 AAPLLDLKPQMRVLDTCSAPGGKSAHILDLEPTVELTALDSDEKRLASAKENLARLQRNA 310 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + FD +LVDAPCS TG IRRHPD+ W R DI Q K+L Sbjct: 311 VFKMLDAQDLSSLEGEFDRILVDAPCSGTGVIRRHPDIKWLRREGDIANLTAIQAKILDS 370 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 S +K GGI++++ CS+ +++ E ++ L +L+P N Sbjct: 371 AFSKLKKGGILLYTTCSILPEENSEQIEAFLSRH-ADAKLLPFNIFGQSG---------- 419 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G + P + DGFF + + Sbjct: 420 GTFQHLPGDDDA--------DGFFYARMIK 441 >gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47] gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47] Length = 423 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 109/454 (24%), Positives = 189/454 (41%), Gaps = 63/454 (13%) Query: 14 LLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L V +K+ S + L++ + +++D+ L +V+ LR+ ID ++FV Sbjct: 2 TLFEVEKKKFSGMDSLMEKFHQKLK----NEKDRALFVELVHGVLRYKNLIDYYINFVTK 57 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + +LRV+ ++L+L+ + +YA V+ A E A + + H VN+ILR + Sbjct: 58 KGVK--DKRILNILRVATYELLFLEKIPEYATVNEACEVASKI--SPHLKAFVNAILRNI 113 Query: 132 SREKIE------------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 R K + I+ P + + LE YG E+ L I + + Sbjct: 114 IRNKNQIQESLEKIKDVDYKSYISIKLSYPIFLIDYLEESYGFEKTLKILEFLNTKPPQS 173 Query: 180 LTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + + + + + L +I + +G ++ QD ++S Sbjct: 174 IKINTKKTDVKVLIQELDKNGFEYEINFYNQEVIYVLKGNIKETELYKKGYFYFQDLASS 233 Query: 232 IPV--QLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V V+DLCAAPGGK V V A D++ +L+ LR N+ RL Sbjct: 234 LVVKLNQEDFKEARKVIDLCAAPGGKTFNCAEVIDGFVVACDINDHKLDVLRENILRLGF 293 Query: 289 YAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + DA + P FD V+ D PC+ G IR+ PD+ W + DI Q + Sbjct: 294 DNIIVAKSDAEVFNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVR 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L S++K GG++ +S C+L ++++E V K L LV + Sbjct: 354 ILDNAASYLKRGGLLFYSTCTLGRKENEGTVLKFLDKHK-DFSLVSQTT----------- 401 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I PD + DGF+ LR+ Sbjct: 402 --------IFPDEFK--------CDGFYIAKLRK 419 >gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tuberculostearicum SK141] gi|255297607|gb|EET76918.1| Fmu protein [Corynebacterium tuberculostearicum SK141] Length = 516 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 101/456 (22%), Positives = 160/456 (35%), Gaps = 37/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R V+ ++ V +L + L RD I TLR L +DA Sbjct: 78 APRSVAFDVVRRVSDDDAFANLILPKALRK---QKLKGRDAAFATEITYGTLRTLGVVDA 134 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L ++ LR+ Q+LY V +A VD V + N Sbjct: 135 VIAECSSRGLEAISPAVVDALRLGTYQVLYTRVEPHAAVDTTVRLVEA-AGEVKAKGFAN 193 Query: 126 SILRRVSREKIELLQR----------IAGISIIPEWFKERLENFYGKERVLAISDACISP 175 I+R ++R + IA P W E G + A Sbjct: 194 GIMRTITRTPAKAWLDKLAPQGEIAGIAFKHAHPTWIAESFSRVLGLGELETALAADSDR 253 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + L + E A + L +G+ VQD + + Sbjct: 254 PSVHLVARPGEISAEELALMTGNEEGRYSPYAVYMESGDPGQLEPVRQGLAAVQDEGSQL 313 Query: 233 PVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRL 286 + LDLCA PGGK A + +A D + + + Sbjct: 314 IARAVCEAPLEGEDTGRWLDLCAGPGGKAALMGALARIDSAHVDAVEVSPHRAALIEKTV 373 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 D+ D + + FD VLVDAPCS G +RR P+ W + DI + Q + Sbjct: 374 SDLPVDVRVADGRNPGVGEGFDRVLVDAPCSGLGALRRRPEARWRKSEADIAELNQLQFE 433 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ V+PGG+V++S CS D +++ +V + +R + E + ++ D+ Sbjct: 434 LLSSALNLVRPGGVVIYSTCSPDLRETRGIVDRAVRE--LGAEELDAHALIPDMGDVGH- 490 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 E +++ P G D F ALRR Sbjct: 491 ---EKSVQMWPH--------RHGTDAMFFAALRRAA 515 >gi|209542805|ref|YP_002275034.1| Fmu (Sun) domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209530482|gb|ACI50419.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 438 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 147/437 (33%), Positives = 218/437 (49%), Gaps = 24/437 (5%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ ++ V+ R L LD + + A V LR + Sbjct: 23 PTRDIAFDIVQGVLEHRRMLETSLDQSAAARDADARDRAAAHRLAATV---LRHMGTAGM 79 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL+ L P ++ +L + VAQIL+LD +A V AV A+R + FA LVN Sbjct: 80 VLEPFLKKEPP---LPVRTVLLIGVAQILFLDTPAHAAVGTAVSLARR-RGLVPFAGLVN 135 Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LRRV++ L+ + +P W + +++A +DLT++ Sbjct: 136 AVLRRVAQAGAGALEGLDQARLDVPPWLWGAWGSL-----ARPVAEALGQEAPLDLTLRP 190 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + VMLPTG +RL + LPG+A+G +WVQDA+A++P +L Sbjct: 191 GLPEAERPPGGVMLPTGTLRLPAGT-RVADLPGYAQGAFWVQDAAAALPARLLAPRAGER 249 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP 303 + DLCAAPGGKTAQL V+GA+VTA++ RL +L+ NLDRL L +++ DA + P Sbjct: 250 IADLCAAPGGKTAQLAVAGAEVTAIEREPGRLARLKENLDRLGLADRVQLVQGDAATWRP 309 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 DAVL+DAPCS+TGT RRHPDVLW + D+ Q +LL ++PGG +V+ Sbjct: 310 DAPLDAVLLDAPCSATGTARRHPDVLWIKRPRDLTALTEGQDRLLAAARDMLRPGGRLVY 369 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 + CSL ++ E V+ + L P + + AL+ EGW+R P + Sbjct: 370 AVCSLQPEEGPERVRAA-----EAMGLEPDPFTAEELAVLPEALTKEGWLRTHPGLW--- 421 Query: 424 DGVSSGMDGFFAVALRR 440 GMDGFFA RR Sbjct: 422 -TEQGGMDGFFAARFRR 437 >gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 423 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 193/454 (42%), Gaps = 53/454 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN+R ++ +L V + LL+ + L+Q+D+ V +V+ + +D Sbjct: 1 MNSRSIAFDILKKVFVNKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L ++ + + LQ +L +S+ Q++YL+ + +YA+V+ +V K ++ A Sbjct: 57 YLLAKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 112 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+IL + R K + L+ + L Y KE V I Sbjct: 113 INAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLIKQYDKEIVNQIVVNNHQI 172 Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + V T N ++ T ++I++ + G +QD ++ Sbjct: 173 PKLYIRVNTLKITSDQLFNKYKDVYLLEKTNVNDCLIANKTIINSDLYKNGFITIQDKAS 232 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + Q+ N VLD+C+APGGK L + + + A ++++ +++ ++ N++RL+ Sbjct: 233 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVANEINESKIKLIKENINRLN 292 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + MDA K+ FD +L+DAPCS G +R P++ D + Q +L Sbjct: 293 CLNISLTNMDARKIKQKQEFDYILLDAPCSGFGVFKRKPEIKLRFDQTQVNNIINLQEEL 352 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K G +V+S C++++ +++ + K L ++L Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHKDMIKL----------------- 395 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I G DGF+ L++L Sbjct: 396 -----------YEQQIFGFEENTDGFYICKLKKL 418 >gi|55821413|ref|YP_139855.1| RNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55823338|ref|YP_141779.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066] gi|55737398|gb|AAV61040.1| RNA-binding protein [Streptococcus thermophilus LMG 18311] gi|55739323|gb|AAV62964.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066] Length = 443 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ +S L+ +D+ LV IV T+ ++ + Sbjct: 12 ARGQALEVLEEVFQEGAYSNIALNARLSNS---CLTDKDKALVTEIVYGTVARKITLEWI 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KLVN Sbjct: 69 LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPSHAVVNDAVSIAKNRGNKKGAEKLVN 127 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ + + +R + +P W ++L YG+ER LAI + + Sbjct: 128 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKA 187 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A A + L + F EG+ +QD ++ + Sbjct: 188 SVRVTDVSRMEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 247 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD CAAPGGKT + ++ VTALD+ +L ++ N RL L Sbjct: 248 LAIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIKENAQRLGLADKVKT 307 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + +D D Q +L Sbjct: 308 QKLDARQVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDILSS 367 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L S P ++ + ++ +A++PE Sbjct: 368 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDHPCKDIVVNGYLAITPE 427 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ DGFF LR+ + Sbjct: 428 QYL----------------TDGFFIAQLRKKV 443 >gi|116628135|ref|YP_820754.1| RNA-binding protein [Streptococcus thermophilus LMD-9] gi|116101412|gb|ABJ66558.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus LMD-9] Length = 442 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ +S L+ +D+ LV IV T+ ++ + Sbjct: 11 ARGQALEVLEEVFQEGAYSNIALNARLSNS---CLTDKDKALVTEIVYGTVARKITLEWI 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KLVN Sbjct: 68 LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPSHAVVNDAVSIAKNRGNKKGAEKLVN 126 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ + + +R + +P W ++L YG+ER LAI + + Sbjct: 127 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKA 186 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A A + L + F EG+ +QD ++ + Sbjct: 187 SVRVTDVSRMEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 246 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD CAAPGGKT + ++ VTALD+ +L ++ N RL L Sbjct: 247 LAIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIKENAQRLGLADKVKT 306 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + +D D Q +L Sbjct: 307 QKLDARQVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDILSS 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L S P ++ + ++ +A++PE Sbjct: 367 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDHPCKDIVVNGYLAITPE 426 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ DGFF LR+ + Sbjct: 427 QYL----------------TDGFFIAQLRKKV 442 >gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119956490|gb|ABM13495.1| Fmu (Sun) domain protein [Mycobacterium vanbaalenii PYR-1] Length = 449 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 106/465 (22%), Positives = 168/465 (36%), Gaps = 44/465 (9%) Query: 1 MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + +L V + L D R ++ RD + T R Sbjct: 1 MKRKRLDPARQAAFDVLRAVSERDAYANLALPALLRD---RGITGRDAAFATELTYGTCR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +DAV+ + + L LLR+ Q+L V D+A V V+QA + + Sbjct: 58 TRGLLDAVIAAAAGRPVDKIDPVLLDLLRLGSYQLLRTRVDDHAAVSTTVDQAG-IEFDS 116 Query: 119 HFAKLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKE 163 A VN +LR ++R +A + P W + + Sbjct: 117 SRAGFVNGVLRTIARRDEASWVEELAPSATGDPIGHLAFVHAHPRWVAQAFADALGARAG 176 Query: 164 RVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 + A+ + S + L + A ++ + + L E Sbjct: 177 ELGALLASDDSRPEVHLVARPGALTAAELAEQVGGGVGRYSPYAVYLGEGDPGQLAAVRE 236 Query: 221 GVWWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKR 274 G VQD + + + LDLCA PGGKTA L G + + + Sbjct: 237 GTALVQDEGSQLVARALTLAPLVGPDGGRWLDLCAGPGGKTALLAALGAPEGVTVTAVEP 296 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + +++ +D + FD VLVDAPC+ G +RR P+ W R Sbjct: 297 APRRADLVEQNTAGLPVEVVRVDGREPGLAPGFDRVLVDAPCTGLGALRRRPEARWRRQP 356 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D+ A QR+LL I +PGG+V+++ CS ++ VV LR P V + Sbjct: 357 GDVPPLAKLQRELLASAIRLTRPGGVVLYATCSPHLAETAGVVADALRRHP--VTALDTR 414 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + D S +++ P G D FA ALR Sbjct: 415 ELFEPATDTGDGTS----VQLWPH--------RHGTDAMFAAALR 447 >gi|312278741|gb|ADQ63398.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus thermophilus ND03] Length = 440 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 202/452 (44%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ +S L+ +D+ LV IV T+ ++ + Sbjct: 9 ARGQALEVLEEVFQEGAYSNIALNARLSNS---CLTDKDKALVTEIVYGTVARKITLEWI 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KLVN Sbjct: 66 LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPSHAVVNDAVSIAKNRGNKKGAEKLVN 124 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ + + +R + +P W ++L YG+ER LAI + + Sbjct: 125 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIEQYGEERALAIFQSLFVRNKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A A + L + F EG+ +QD ++ + Sbjct: 185 SVRVTDVSRMEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 +LD CAAPGGKT + ++ VTALD+ +L ++ N RL L Sbjct: 245 LAIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLALIKENAQRLGLADKVKT 304 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + +D D Q +L Sbjct: 305 QKLDARQVHQVFPTASFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFKSLKSVQLDILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L S P ++ + ++ +A++PE Sbjct: 365 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHPDFEQVALDHPCKDIVVNGYLAITPE 424 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ DGFF LR+ + Sbjct: 425 QYL----------------TDGFFIAQLRKKV 440 >gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15] Length = 426 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 122/447 (27%), Positives = 193/447 (43%), Gaps = 39/447 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R +++ ++ V SL+ L A L ++ +++A+ T R+ R+D L Sbjct: 2 RAIAAGVMLSVE-NGQSLSQCLP-----PALNRLPANERPVLQALCYGTCRWFYRLDGEL 55 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + L L + + L+ V++ Q+ + A+YAV++ VE A R + H LVN + Sbjct: 56 NNRLKKPLRKPDRIIHHLMLVALFQLRFSQQANYAVLNETVE-ACRALDKPHLTGLVNGV 114 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---F 184 LR RE + A P W E+L + + E I DA + + L V F Sbjct: 115 LRAAEREGAQEPADDAARFSHPVWMVEKLRHNWP-ENWHHILDANNAQAPMTLRVNALRF 173 Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + + L + R P + LP FA+G VQD +A + L Sbjct: 174 ARDEYLGLLAEAGIEAKATRFAPHGIQLATPVPVDRLPWFADGAVSVQDEAAQLCTTLMD 233 Query: 239 TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293 VLD CAAPGGKT + A+V A+D S RL +++ NLDRL L A Sbjct: 234 LAPGQRVLDACAAPGGKTCAILESCGELAEVVAIDESADRLPRVQENLDRLDLNATLKQA 293 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + FD +L+D PCS++G IRRHPD+ R DI A Q LL + Sbjct: 294 DAAATDQWWDGEAFDRILLDVPCSASGVIRRHPDIKLLRRESDITPLAAIQLGLLDAMWA 353 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +KPGG +V++ CS+ Q++ ++Q+ + + + P + Sbjct: 354 ILKPGGRLVYATCSVFPQENHRIIQRFCKQQTDAILVEP---------EAQWGRDMGAGR 404 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ PD DGFF L + Sbjct: 405 QLLPD--------PDSHDGFFYAVLEK 423 >gi|71276447|ref|ZP_00652723.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Dixon] gi|71901280|ref|ZP_00683379.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] gi|170730998|ref|YP_001776431.1| Sun protein [Xylella fastidiosa M12] gi|71162763|gb|EAO12489.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Dixon] gi|71728971|gb|EAO31103.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] gi|167965791|gb|ACA12801.1| Sun protein [Xylella fastidiosa M12] Length = 429 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 126/452 (27%), Positives = 197/452 (43%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G+ R+V++ +L+ V+ + SL L RD+ LV AI LR Sbjct: 1 MSDGIAPRVVAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P +A L L L R L+ LL V AQ+ L V YA + V+ A R H Sbjct: 57 PVYEAALTRWLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHR 115 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYID 179 VN++LRR RE++ ++ A P W ER+ + + + + +P+++ Sbjct: 116 VSFVNAVLRRAQRERLPVVSSDAAW---PRWLAERIRADWGEQAEAIFDASLKPAPMWLR 172 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + D T+ +L A L L ++ LPGF G VQD SA Sbjct: 173 VNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLSAQQ 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L + +LD CAAPGGK A +TALDV +RL ++ DR+H+ A Sbjct: 233 VAALLSPAPHARLLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKA 292 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D + + FDAVL+DAPCS+TG +RR PDVL R +D++ Q +LL Sbjct: 293 RLCVADATDLAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLLNIQSRLL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG++V+ CS+ + +++ ++ L + P ++ + Sbjct: 353 DACWRTLRPGGVLVYVTCSVLRAENQAQLEAFLARTADACAEDPGDAYGQPA-------- 404 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G DGFF L + Sbjct: 405 ---------GLGRQRLPGEQGGDGFFYARLIK 427 >gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS] gi|119868467|ref|YP_938419.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. KMS] gi|108769770|gb|ABG08492.1| Fmu (Sun) [Mycobacterium sp. MCS] gi|119694556|gb|ABL91629.1| Fmu (Sun) domain protein [Mycobacterium sp. KMS] Length = 455 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 167/460 (36%), Gaps = 42/460 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR V+ +L V + L + R L RD + T R Sbjct: 14 KPLDPARRVAFDVLRAVSERDAYANLALPALLNE---RGLDGRDAAFATELTYGTCRSRG 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +DAV++ + R L LLR+ Q+L V +A V VEQA + + A Sbjct: 71 LLDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTAR-A 129 Query: 122 KLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVL 166 VN +LR+++ + IA P W + + + Sbjct: 130 GFVNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELD 189 Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 A+ + + + L + E A + + + L +G Sbjct: 190 ALLASDDARPLVHLAARPGVLSAEELAAAVGGELGRYSPYAVYLPGGDPGRLDPVRDGSA 249 Query: 224 WVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279 VQD + + + + LDLCA PGGKTA L V Sbjct: 250 LVQDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAALAPGPLTA-VEPAPRRAE 308 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + L ++ +D D + FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 309 MVEENTRGLD-VTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPG 367 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR+LL I +PGG+V+++ CS ++ VV +R P V + + + Sbjct: 368 LARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQP--VTALDTRALFDP 425 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 D+ ++++ P G D FA AL+ Sbjct: 426 VDDLGDGP----YVQLWPH--------RHGTDAMFAAALQ 453 >gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces griseoaurantiacus M045] gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces griseoaurantiacus M045] Length = 472 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 99/464 (21%), Positives = 162/464 (34%), Gaps = 42/464 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-FRLLSQRDQILVRAIVNVTLRFLPRID 64 R ++ L V + +L + RD L +V TLR D Sbjct: 22 PVRFLAFEALRAVDERDAYANLVLPPLLRKAREQDGFDGRDAALATELVYGTLRRQGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+L + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 82 AILAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 140 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V+R ++ + +A + P W L + G R + Sbjct: 141 NAVLRKVARHDLDGWLEQVAPPYDDDPEEHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225 +A + L + T L G + ++ EG V Sbjct: 201 EADNERPEVTLVARPGRATAEELLREPAAEPGRWSPYAVRLTEGGEPGAVEAVREGRAGV 260 Query: 226 QDASASIPVQLFGTLN----NLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLE 277 QD + + + LD CA PGGK A GA + A + R Sbjct: 261 QDEGSQLVALALANAPVEGRDERWLDGCAGPGGKAALLAALAAERGAALVAAEKQPHRAG 320 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + L + + FD VLVD PC+ G +RR P+ W R +D+ Sbjct: 321 LVARALHGNPGPYQVVTADGTRPAWRPGTFDRVLVDVPCTGLGALRRRPEARWRRRPEDL 380 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR LL + V+ GG+V ++ CS ++ VV VL+ P E + Sbjct: 381 DGFAPLQRGLLEMALRSVRVGGVVGYATCSPHLAETRAVVTDVLKRQPG-FEQLDARPLL 439 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ P + G D + LRR+ Sbjct: 440 PGVSLLGEGPD----VQLWPHL--------HGTDAMYLALLRRV 471 >gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. JLS] gi|126234809|gb|ABN98209.1| Fmu (Sun) domain protein [Mycobacterium sp. JLS] Length = 455 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 167/460 (36%), Gaps = 42/460 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR V+ +L V + L + R L RD + T R Sbjct: 14 KPLDPARRVAFDVLRAVSERDAYANLALPALLNE---RGLDGRDAAFATELTYGTCRSRG 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +DAV++ + R L LLR+ Q+L V +A V VEQA + + A Sbjct: 71 LLDAVIEAAAGRPVDRIDPVLLDLLRLGTYQLLRTRVEPHAAVSTTVEQAGIEFDTAR-A 129 Query: 122 KLVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVL 166 VN +LR+++ + IA P W + + + Sbjct: 130 GFVNGVLRKIAGRDEQSWVAELAPPADTDPVGHIAFTHAHPRWVAQAFTDALGARAGELD 189 Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 A+ + + + L + E A + + + L +G Sbjct: 190 ALLASDDARPLVHLAARPGVLSAEELAAAVGGEVGRYSPYAVYLPGGDPGRLDPVRDGSA 249 Query: 224 WVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279 VQD + + + + LDLCA PGGKTA L V Sbjct: 250 LVQDEGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTAMLAALAPGPLTA-VEPAPRRAE 308 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + L ++ +D D + FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 309 MVEENTRGLD-VTVLRVDGRDPGLEPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPG 367 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR+LL I +PGG+V+++ CS ++ VV +R P V + + + Sbjct: 368 LARLQRELLASAIRLTRPGGVVLYATCSPHLAETVGVVADAVRRQP--VTALDTRALFDP 425 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 D+ ++++ P G D FA AL+ Sbjct: 426 VDDLGDGP----YVQLWPH--------RHGTDAMFAAALQ 453 >gi|71898895|ref|ZP_00681062.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] gi|71731307|gb|EAO33371.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa Ann-1] Length = 429 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 127/452 (28%), Positives = 198/452 (43%), Gaps = 37/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G+ R+V++ +L+ V+ + SL L RD+ LV AI LR Sbjct: 1 MSDGIAPRVVAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P +A L L L R L+ LL V AQ+ L V YA + V+ A R H Sbjct: 57 PVYEAALTRWLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHR 115 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYID 179 A VN++LRR RE++ ++ A P W ER+ + + + + +P+++ Sbjct: 116 ASFVNAVLRRAQRERLPVVSSDAAW---PRWLAERIRADWGEQAEAIFDASLKPAPMWLR 172 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + D T+ +L A L L ++ LPGF G VQD SA Sbjct: 173 VNLRYGDRHTYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLSAQQ 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L + +LD CAAPGGK A +TALDV +RL ++ DR+H+ A Sbjct: 233 VAALLSPAPHARLLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKA 292 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D + + FDAVL+DAPCS+TG +RR PDVL R +D++ Q +LL Sbjct: 293 RLCVADATDLAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLHLLNIQSRLL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG++V+ CS+ + +++ ++ L + P ++ + Sbjct: 353 DACWRTLRPGGVLVYMTCSVLRAENQTQLEAFLARTTDACAEDPGDAYGQPA-------- 404 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G DGFF L + Sbjct: 405 ---------GLGRQRLPGEQGGDGFFYARLIK 427 >gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542] gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542] Length = 505 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 101/466 (21%), Positives = 183/466 (39%), Gaps = 44/466 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 ARLV+ +L V +L R +S RD + TLR R DA+ Sbjct: 49 ARLVAFDVLREVADSDAYANLVLPPMLRS---RGISGRDAAFATELAYGTLRLRGRYDAI 105 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + L + + +LR+ Q+L + V +A V V A+ A+ VN+ Sbjct: 106 IGECVDRPLDKIDAPVLDVLRLGAHQLLGMRVPSHAAVSETVGLARDRVG-AGSAQFVNA 164 Query: 127 ILRRVSREKIELL------------QRIAGISIIPEWFKERLENF-----YGKERVLAIS 169 +LR++SR ++E +++ + P+W L + + + ++ Sbjct: 165 VLRKISRTELEEWLETVEAAQPDEIAKMSVVDSHPQWITRALRDSLVGSGRPVDELASLL 224 Query: 170 DACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 +A + + L + + + ++ + + ++P G+ VQ Sbjct: 225 EADNASPRVTLVARPGLVTQDELGEQVESRPGRLAPTAVVLDGSDPGAVPAVRSGLAGVQ 284 Query: 227 DASASIPVQLFGTLN----NLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRR--- 275 D + + F + LD+CA PGGK A GA+V A +V R Sbjct: 285 DEGSQLVTLAFTQAPVEGADARWLDMCAGPGGKAALLAAVAGTRGARVVANEVQPHRADL 344 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 +++ + + + + +D VLVDAPC+ G +RR P+ W R Sbjct: 345 VDRALVAVPADSVERVQVWDGRDIGEQEPGAYDRVLVDAPCTGLGALRRRPESRWRRTPA 404 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-IPVELVPLN 394 D+ A QR+LL + V+ GG+V + CS ++ VV VL + P VE++ Sbjct: 405 DVKVLATLQRELLTSALHAVREGGVVGYVTCSPHLAETRAVVSDVLAALPEGFVEMLDAR 464 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + L+ +++ P + G D LRR Sbjct: 465 ALVTEIAGTDVPLAERLDVQLWPHL--------HGTDAMHLTLLRR 502 >gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 440 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 102/470 (21%), Positives = 201/470 (42%), Gaps = 60/470 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R + ++ V+ K L L + + +RD L+ I ++ Sbjct: 1 MKD---IRKKALFIIDNVLYKGAFLNEELLILSKS----KIDKRDYNLIVNITTGVVQNK 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ++ ++ + + ++ +L++ + QI + + DY++++ +V AK N+ Sbjct: 54 LLLEHIVSKYSKIKIKKIHRTILTILQMGIYQIFFTSRIPDYSIINESVNLAK-IFGNQG 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAG---------------ISIIPEWFKERLENFYGKER 164 A VN +LR + R+K + + P+++ + + GK+ Sbjct: 113 SAGFVNGLLRNILRDKENIEKSEFWLNDVKETDYAEYLSIYYSHPKFYVDLILEEKGKDF 172 Query: 165 VLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSL 215 + + V +E A KL T + + + PESI+ Sbjct: 173 TKELLKCNNVQAPFTIRVNTLKCSVEDLAGKLKKRGFDTEKTKYSKNALIVKNPESILDS 232 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSK 273 F EG +++QD ++ + + VLDLC+APGGK+ + + + + D+S Sbjct: 233 FLFKEGYFYIQDEASMLVSEFTKFNEKAKVLDLCSAPGGKSFNIAMLNRDASIISCDISN 292 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331 +++ +R N++RL + I++ DA Y FD V+VDAPCS G RR P++ W Sbjct: 293 KKISLIRENMERLGIKNIKILKNDATIYNKTFYNLFDNVIVDAPCSGLGLYRRKPEIKWN 352 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 R +DI K Q ++ +VK GGI+ +S C++ ++++E+++ K L + E+ Sbjct: 353 RKPEDIEKLTKIQMNIINNASKYVKIGGIITYSTCTITREENEDIINKFLDENKN-FEIE 411 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ + KI + MDGF ++R+ Sbjct: 412 KIENS----------------------DILKIYTNTHNMDGFSIAKIKRI 439 >gi|146280416|ref|YP_001170569.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas stutzeri A1501] gi|145568621|gb|ABP77727.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas stutzeri A1501] gi|327478632|gb|AEA81942.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas stutzeri DSM 4166] Length = 440 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 121/459 (26%), Positives = 203/459 (44%), Gaps = 41/459 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ LS V+ + SL L G + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAARALSVVLSGKASLGSSLPEVLGK-----VDARDRGLTQELAFGTARWQPRLA 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + +L ++ LL V + Q+L+ + +A + V + K+ L+ Sbjct: 56 GLANKLLQKPFKAADRDVEALLLVGLYQLLHTRIPAHAAIGETVGCVDKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LRR RE LL + + P W ++ L+ + + ++ P+ + Sbjct: 115 NAVLRRAQREGEALLAELEHDPVIRVAHPRWLQKALKAHWPEHWEAICAANNAHPPMMLR 174 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + + + + +L + E P + LPGFAEG VQD +A + Sbjct: 175 VNRRQTSRDVYLTELQTAGIDAFPCEFSEDGIRLASPCDVQQLPGFAEGRVSVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ ++ ALD+ +RL ++R NL+RL L Sbjct: 235 AAGLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLVALDLEPKRLARVRENLERLQLD 294 Query: 290 AE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 AE + K F +L+DAPCS+TG IRRHPD+ TR +DI A Q ++ Sbjct: 295 AELLAADARATAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAEDIAPLAALQGEM 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ GG+++++ CS+ ++ EV+ L +P EL + L Sbjct: 355 LDALWPTLEVGGVLLYATCSVLPTENREVIGAFLARTPGAREL---------DLPAGFGL 405 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL-IQPK 445 + ++ P G DGF+ L ++ QP+ Sbjct: 406 TQPHGRQLLPQ--------QDGHDGFYYAKLIKIAAQPR 436 >gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428] gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428] Length = 410 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 109/444 (24%), Positives = 177/444 (39%), Gaps = 44/444 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R L + + +L + + L D+ LR L R+D Sbjct: 1 MNPRQSCVLALLEWEKGKYFSDEILHTSLEKNPMQPL---DRAFFMETFFGVLRNLSRLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + R + +LR+ + QI ++ A +A V+ +V R + + A L Sbjct: 58 FLIGQLREG---RIDPQTRAVLRLGLYQIFHMRTAPHAAVNESVALGGRARGLVN-AILR 113 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++ + + E L A + PE+ R E +G E + + P + + Sbjct: 114 RALREKEALESDLLAASSAVRTSHPEFLIARWEEVFGPEATRILCEWNNEPADVHVRANG 173 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLP--GFAEGVWWVQDASASIPVQLFGTLNN 242 T L + + L + +P A G+ +VQD S + L Sbjct: 174 LRVTVGELLRSSTSAM-PSPVHPLAIKVEHIPPSWIAMGLCYVQDPSTLLSCDLLAPQPG 232 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD CAAPGGKT L + ++ A D+ R+ +LR NL RL + I D Sbjct: 233 ETVLDACAAPGGKTTYLAQLMHDQGRIIACDLYDSRVARLRENLKRLGVTIARAIRHDCM 292 Query: 300 DYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 P FD +LVDAPCS+TG IRR DV W +D ++ Q LL + + +K Sbjct: 293 QAGPPLDPDSFDRILVDAPCSNTGVIRRRVDVRWRLTEEDFIRMPAQQLALLRRTATLLK 352 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S CSL+ ++++ +V+KV + P +R Sbjct: 353 PGGTLVYSTCSLEPEENDLLVEKVCAAIPS--------------------------LRFV 386 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 + +DG FA R Sbjct: 387 --ESRRALPFVDRIDGAFAAKFVR 408 >gi|322516391|ref|ZP_08069316.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124] gi|322125124|gb|EFX96517.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124] Length = 442 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 120/452 (26%), Positives = 198/452 (43%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ S L+ +D+ LV IV T+ ++ + Sbjct: 11 ARGQALEVLEEVFQEGAYSNIALNAHLSKS---YLTDKDKALVTEIVYGTVARKITLEWI 67 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KLVN Sbjct: 68 LAHVIE-DRDKLEPWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAKNRGNKKGAEKLVN 126 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ E + +R + +P W ++L + YG++R LAI + + Sbjct: 127 AVLRKLSSQPLPDPSEIKRVNKRYSVQYSLPVWLVKKLIDQYGEKRALAIFQSLFVRNKA 186 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A A + L + F EG+ +QD ++ + Sbjct: 187 SVRVTDASRLEEIAEATGAERSDLSPVGLVKSSGYFAGTDYFKEGLLTIQDETSQLVAPT 246 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLH-LYAEDI 293 G +LD CAAPGGKT + ++ VTALD+ +L + N RL Sbjct: 247 LGIQGMEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLVLIEENAQRLGQADKVRT 306 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + + D Q +L Sbjct: 307 QKLDASQVHQVFPSDSFDKILVDAPCSGIGLIRRKPDIKYNKYLQDFESLKSVQLDILSS 366 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L S P E V L+ + Sbjct: 367 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLESHP-DFEQVALDHP-------CKDIVVN 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G + ITP+ DGFF LR+ + Sbjct: 419 GCLAITPEQYL--------TDGFFIAQLRKKV 442 >gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211] gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211] Length = 432 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 111/460 (24%), Positives = 186/460 (40%), Gaps = 60/460 (13%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R+ + +L V LD + + + D+ L I ++R +D+ Sbjct: 2 PRMAAWKVLQAV-SAGAYAETALDQVLNKYSMKAI---DKALTTEIAYGSIRQRKYLDSW 57 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +D + S ++ L+ LL + + QI + + AVV+ V+ AK + N+ + +VN Sbjct: 58 IDNLAKISALKQPPRLRWLLHIGLYQIFLMERIPVSAVVNTTVQLAKNNNLNK-LSSVVN 116 Query: 126 SILRRVS---------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 ILR K + +A IP W L + G++ +I+ A P Sbjct: 117 GILRNAIRIREAGQGLPFKSNASEELAQSFSIPLWLANSLITWRGEQGAKSIAMAFNQPP 176 Query: 177 YIDLTVKFDI----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 DL + + + + T G+++ + PG+ G W VQ Sbjct: 177 AFDLRINRCKTNPRSVQEIFDKFGITSLPIKGCTSGLQITSGMGDLRKWPGYEGGEWSVQ 236 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 D S+ L +LD C+APGGK L I ++ A+D S +RL+K+ N Sbjct: 237 DRSSQWIAPLLEAEPGDRILDACSAPGGKATHLAELIDDNGEIWAVDRSPKRLQKVSENA 296 Query: 284 DRLHLYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL L + + D K F +LVDAPCS GT+ R+PD W + I Sbjct: 297 TRLGLNSLKCLAADASMLLDCKPHWKGYFQRILVDAPCSGLGTLSRNPDARWRMTPEKID 356 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q +LL + + PGG +V+S C++ +++ + V + L P V+L N Sbjct: 357 ELIILQARLLRGVLPLLSPGGRIVYSTCTMHPEENFKQVGEFLALHP-KVKLKYQN---- 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +I PD + DGF+A + Sbjct: 412 ---------------QIWPDDAQS-------GDGFYAAVI 429 >gi|225461943|ref|XP_002266112.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera] Length = 525 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 112/480 (23%), Positives = 184/480 (38%), Gaps = 63/480 (13%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL--------------VRAIV 53 R VS+ L + LL+ S + ++ L V IV Sbjct: 60 RAVSAVRLMRIELGGAFAD-LLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIV 118 Query: 54 NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 ++R+ +D ++ + + + L Q+LR+ +I+ LD+ YAVVD V A Sbjct: 119 GGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLA 178 Query: 112 KRDKENRHFAKLVNSILRRV--------------SREKIELLQRIAGISIIPEWFKERLE 157 K +VN+ILR++ + + +A + P W R Sbjct: 179 KVALRP-GAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 237 Query: 158 NFYGKERVLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPTG-------GIRLK 206 + G+E + + S L F +L + +P +R++ Sbjct: 238 KYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIR 297 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---G 263 + ++ EG+ VQD SA + V + S++D CAAPGGKT + Sbjct: 298 TGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMASCLSGQ 357 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTG 320 V A+D++K RL ++ L + K D VL+DAPCS G Sbjct: 358 GMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDAPCSGLG 417 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + + D+ W R +D+ + Q +LL VKPGG++V+S CS+D +++EE V Sbjct: 418 VLSKRADLRWNRSLEDMEQLKNLQDELLDAAAILVKPGGVLVYSTCSIDPEENEERVAAF 477 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ P S + EG + V +DG FA L R Sbjct: 478 LQRHPEF-------SIDPVGRYVPSDFVTEGG-------FYFSNPVKHALDGAFAARLVR 523 >gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL] gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL] Length = 423 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 113/454 (24%), Positives = 195/454 (42%), Gaps = 63/454 (13%) Query: 14 LLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L V +K+ S + L++ + +++D+ L +V+ LR+ ID ++FV Sbjct: 2 TLFEVEKKKFSGMDSLMEKFHQKLK----NEKDRALFVELVHGVLRYKNLIDYYINFVTK 57 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + +LRV+ ++L+L+ + +YA V+ A E A + + H VN+ILR + Sbjct: 58 KGVK--DKRILNILRVATYELLFLEKIPEYATVNEACEVASKI--SPHLKAFVNAILRNI 113 Query: 132 SREKIELLQ------------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 R K ++ + I+ P++ + LE YG E+ L I + + + Sbjct: 114 IRNKNQIEESLERIKEIDLKSYISIKLSYPKFLIDYLEESYGFEKALKILEFLNTRPPVG 173 Query: 180 LTVKFDI--------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + + E + + + L +I + +G ++ QD ++S Sbjct: 174 IKINTKKTNVDILVQELRKSGVEYEVNSHNSEIIYILKGNIKDTQLYKQGYFYFQDLASS 233 Query: 232 --IPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + VLDLCAAPGGK V V A D++ +L+ LR N+ RL Sbjct: 234 LVVGLNKEDFKKAKKVLDLCAAPGGKTFNCAEVIDGFVVACDINDHKLDVLRENILRLGF 293 Query: 289 YAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + DA + P FD V+ D PC+ G IR+ PD+ W + DI Q + Sbjct: 294 DNIIVAKSDAEIFNPDFAGRFDIVIADLPCTGFGAIRKKPDIKWNKSYQDIENLHELQVR 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L S++K GG++ +S C+L ++++EE V K L LV Sbjct: 354 ILDNAASYLKRGGLLFYSTCTLGRKENEETVLKFLDKHK-DFSLVSQ------------- 399 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I I PD + DGFF LR+ Sbjct: 400 ------ITIFPDEFK--------CDGFFISKLRK 419 >gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069] gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069] Length = 443 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 112/462 (24%), Positives = 196/462 (42%), Gaps = 44/462 (9%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 M+S +N R + L + + S +L+ + D L RA+ Sbjct: 1 MQSTLNKHTVNSQQLRQQACLALHAIAFEGRSANDVLNSIQFEQ------GSDNSLFRAL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA---VE 109 V + R+ R++++ +L K L L+ + + Q+ Y V D+A + E Sbjct: 55 VLGSCRYFIRLESIAKQLLQKPFKPKDQDLLCLIIIGLYQLEYSRVPDHAAISETVSVCE 114 Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 Q K+ + ++ + +R+ + +P+W L+ +Y ++ ++ Sbjct: 115 QLKKPWATKLVNGVLRNFVRQQPELLSQADSNWDTRFAMPDWLISVLKPYYKG-QMESLM 173 Query: 170 DACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAE 220 +A + L V + + L LP + P S+ LP F++ Sbjct: 174 EAINQQAPMTLRVNRQRIGRDQYLELLLEQGLPASTHPIATSALVLEHPVSVEQLPHFSD 233 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278 G VQDA+A + + + VLD CAAPGGKT + +TA DV R ++ Sbjct: 234 GYVSVQDAAAQLAAGILAPPPHSIVLDACAAPGGKTCHLLELCDSIALTACDVDHERCQR 293 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + NL RL L A+ + P FDA+L+DAPCS+TG IRRHPD+ R DI Sbjct: 294 ISENLLRLDLSAKLDCQDLTDSNYPDNHFDAILLDAPCSATGVIRRHPDIKLLRHASDID 353 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q+++L +K GG ++++ CS+ Q++E+ + L +LV L+ Sbjct: 354 QLVQLQQQILEHLWCKLKAGGRLLYATCSILPQENEQQITHFLERHK-DAKLVSLSEQI- 411 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + G ++ P L MDGF+ L + Sbjct: 412 ----QNLSHTKTGC-QLIPGQLS--------MDGFYYALLEK 440 >gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 428 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 192/453 (42%), Gaps = 53/453 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN+R ++ +L V + LL+ + L+Q+D+ V +V+ + +D Sbjct: 10 MNSRSIAFDILKKVFVNKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 65 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L ++ + + LQ +L +S+ Q++YL+ + +YA+V+ +V K ++ A Sbjct: 66 YLLAKLID--VKKTSIDLQVILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 121 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+IL + R K + L+ + L Y KE V I Sbjct: 122 INAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLIKQYDKEIVNQIVVNNHQI 181 Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + V T N ++ T ++I++ + G +QD ++ Sbjct: 182 PKLYIRVNTLKITSDQLFNKYKDIYLLEKTNVNDCLIANKTIINSDLYKNGFITIQDKAS 241 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + Q+ N VLD+C+APGGK L + + + A ++++ +++ ++ N+ RL+ Sbjct: 242 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVANEINESKIKLIKENITRLN 301 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I MDA ++ FD +L+DAPCS G +R P++ D + Q +L Sbjct: 302 CLNISVINMDARKIKQRQEFDYILLDAPCSGFGVFKRKPEIKLRFDQIQVNSIINLQEEL 361 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K G +V+S C++++ +++ + K L ++L Sbjct: 362 LESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHKDMIKL----------------- 404 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++I G DGF+ L++ Sbjct: 405 -----------YEQQIFGFEENTDGFYICKLKK 426 >gi|227504402|ref|ZP_03934451.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium striatum ATCC 6940] gi|227199050|gb|EEI79098.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium striatum ATCC 6940] Length = 506 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 98/453 (21%), Positives = 150/453 (33%), Gaps = 37/453 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR VS +L V L L RD + +LR +DAV Sbjct: 71 ARAVSFEVLRRVHSDDAFANLTLPKALRVHK---LEGRDAAFATELTYGSLRTEGVLDAV 127 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + +L + LR+ Q+L+ V +A VD V + + N Sbjct: 128 IGECSSRALDAIAPEVLDALRLGAYQVLFTRVEPHAAVDTTVRLVEAADFEK-AKGFANG 186 Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 I+R ++R E A P W + G + A + Sbjct: 187 IMRTITRTPAEKWLDKLAPQGEIAALAFKHAHPAWIAQSFSRVVGLGELEAALEGDSQRP 246 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + L + E A + L +G VQD + + Sbjct: 247 IVHLVARPGEISAEELALMTGNEEGKYSPYAVYMESGDPGDLEPVKQGFAAVQDEGSQLI 306 Query: 234 VQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLH 287 + LDLCA PGGK A + A D + + + Sbjct: 307 ARAVVEAPVAGTDSGRWLDLCAGPGGKAALMGALARIEQAHVDAVEVSPHRAELIKKTVA 366 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + D + FD VLVDAPCS G +RR P+ W + DI Q +L Sbjct: 367 DLPVRVHVADGRNPGLLAGFDRVLVDAPCSGLGALRRRPEARWRKSESDIAGLNELQFEL 426 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + V+PGG+VV+S CS D +++ +VV + + L + + I + Sbjct: 427 LESALKLVRPGGVVVYSTCSPDLRETRDVVDRAVAK------LGAVELDAHELIPDMGDV 480 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P G D F ALRR Sbjct: 481 GHHKSVQMWPH--------RHGTDAMFFAALRR 505 >gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus epidermidis VCU144] Length = 393 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 94/403 (23%), Positives = 181/403 (44%), Gaps = 30/403 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R + ++ V+ K ++ + ++ D+ L +V T++ Sbjct: 2 MKS---VRTYALETINDVLNKGAYSNLKINEVLSTN---NINTVDKNLFTELVYGTIKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + + ++QLL +S+ Q LYLD + ++A++ AV+ AK+ H Sbjct: 56 YTLDYLLKPFIKTKIKS---WVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGF-H 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR V R + + +RIA +P+W + +G E+ I+ + Sbjct: 112 TGNIVNGILRTVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGVEKTENIARSF 171 Query: 173 ISPLYIDLTVKFDIETW---AHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWW 224 + P+ + ++ KL L +V+ F EG Sbjct: 172 LEPVTTTVRANISRDSIDSIISKLEQEGYHVKKDDMLPFCLHISGMPVVNSNAFKEGYIS 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRC 281 +QD S+ + + + VLD C+APGGK + V A D+ + ++ ++ Sbjct: 232 IQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQ 291 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 N+ +L L + DA + K +D +LVDAPCS G +R P++ +++ + I Sbjct: 292 NIKKLKLNNIKAFQHDATEVYDKM-YDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLV 350 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 Q ++L +KPGG +V+S C++++ ++E V+ + + Sbjct: 351 ELQLQILENVKDNIKPGGTIVYSTCTIEQMENENVIYTFFKET 393 >gi|299136400|ref|ZP_07029583.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8] gi|298600915|gb|EFI57070.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8] Length = 456 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 173/457 (37%), Gaps = 61/457 (13%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ARL + +L V LL S LLSQ D+ L A+V TLR+ +D Sbjct: 39 TPARLAAFEILERVATSSAHSDDLL----YGSGLALLSQADKNLTTALVLGTLRWQIALD 94 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 A + +L +Q LR+ Q+L++D + +A + +VE A+ + + + Sbjct: 95 ARIKPLLQRPELTLAQPVQTALRLGAFQLLHMDRIPAHAALSESVELARA-AGHPYAVGM 153 Query: 124 VNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN++LR+ + E A P W ER YG+ LAI + Sbjct: 154 VNAVLRKLAAAKPPGQRLHESTAAFAERLGHPSWLAERWVTNYGRATALAICEYDQQEP- 212 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 RL + + L Sbjct: 213 --------RAGDLFSQEDTEEGGSQPRLDDGSRLVGELAA-------------------A 245 Query: 238 GTLNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDII 294 + D CAAPGGKT A + A DVS RL + L R H I Sbjct: 246 SVSGAQRIWDCCAAPGGKTLLLAQRHPQADLLATDVSSYRLRAMAQRLQRDVHGKKVRTI 305 Query: 295 EMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E DA + FD +L D PCS TGT+ R+P++ D+ + A QR +L + Sbjct: 306 EADASTLSEDEGLFDLILCDVPCSGTGTLARNPEIRHHLRPSDLARQAERQRAILSAALL 365 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMA------- 404 + PGG +++S CSL+ +++E+VV+ V + LV + + Sbjct: 366 RLAPGGRLIYSTCSLEPEENEQVVKVVFEGAKEKTGISLVSAEPVVARLQEQGVLAAEAN 425 Query: 405 -MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ +G++R P + DGFFA R Sbjct: 426 VAKLTRDGFLRTLPGAGFE-------GDGFFAAVFVR 455 >gi|170719272|ref|YP_001746960.1| sun protein [Pseudomonas putida W619] gi|169757275|gb|ACA70591.1| sun protein [Pseudomonas putida W619] Length = 436 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 192/443 (43%), Gaps = 42/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + + +RD+ L + + T R+ PR+D + +L Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +Q LL + + Q+ Y + +A + V A + K+ L+N++LRR RE Sbjct: 69 ADADVQALLLIGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEA 127 Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 + + + P W ++ L+ F+ E+ AI A + + L V + + Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186 Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + + SLPGFAEG VQD +A + L Sbjct: 187 ALLTETGVGASACQFSRDGIVLTEACDVRSLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSG---AKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299 VLD C APGGKT L+ + + A+D+ +RL ++R NL+RL L A D Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLGHLVAIDLEAKRLTRVRENLERLQLDAELIACDARDTA 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALAALQGELLDALWPTLEVGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++++ CS ++ EV+ L +P EL A + L+ EG Sbjct: 367 MLLYATCSSLPTENTEVIGAFLARTPGARELDLATEAGIRQPHGRQLLAQEG-------- 418 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 ---------GHDGFYYAKLIKIA 432 >gi|310659156|ref|YP_003936877.1| rsmb [Clostridium sticklandii DSM 519] gi|308825934|emb|CBH21972.1| RsmB [Clostridium sticklandii] Length = 444 Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 193/463 (41%), Gaps = 58/463 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + NAR ++ ++ V + ++ + + + R++ V +V L L Sbjct: 11 MSN--NARKIAYDIIYDVKYNKAYSNISINKAFNKN---TIDNREKGFVTELVYGALSRL 65 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ L + + +L + Q+ ++D V+D+A VD +V+ K+ + Sbjct: 66 IYLDYQIEQFLDMRASKLSKQAKTVLEMGFYQLEFMDSVSDFASVDESVKLIKKV--DNR 123 Query: 120 FAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDA 171 A ++N+++R+ +E + I E+ R Y +E + + Sbjct: 124 SAGIINAVMRKRVKEGKAEYTDKISDKAKSLSIEFSISEYIARRFLKIYKEEFTRQLLSS 183 Query: 172 CISPLYIDLTVKFDIETWAHKLN---------AVMLPTGGIRLKELPESIVSLPGFAEGV 222 + + + + T A ++I S P F +G Sbjct: 184 MLEKPSLFIRLNKLRSTEAELFENLEQQGIYSKKNDIIDSAYEISGMKNIGSNPLFVKGG 243 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 + +QD S+ + V+ L +VLD+C+APGGK+ + + + ++ ++D+S+ +++ L Sbjct: 244 FVIQDLSSMLAVKALNPLPGDTVLDICSAPGGKSFYIADLMENKGQLDSMDISEHKIQML 303 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + L + + MDA + + +D +LVDAPCS G IRR P++ + + +D+ Sbjct: 304 KKRAVELGVDIINARVMDATVFNEEMTNRYDKILVDAPCSGFGIIRRKPEIRY-KSYEDV 362 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q ++L ++K G +V+S C+L+K+++ E+V K L ++ Sbjct: 363 NQLPEIQYQILSNASKYLKDTGSLVYSTCTLEKKENIEIVDKFLENNKEFYLEEEPKE-- 420 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + DGFF ++ Sbjct: 421 -----------------LYPHI--------HNTDGFFIAKFKK 438 >gi|26986811|ref|NP_742236.1| sun protein [Pseudomonas putida KT2440] gi|46396870|sp|Q88RR3|RSMB_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|24981407|gb|AAN65700.1|AE016196_11 sun protein [Pseudomonas putida KT2440] Length = 436 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 123/443 (27%), Positives = 195/443 (44%), Gaps = 42/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + + +RD+ L + + T R+ PR+D + +L Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +Q LL V + Q+ Y + +A + V A + K+ L+N++LRR RE E Sbjct: 69 ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127 Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 + + + P W ++ L+ F+ E+ AI A + + L V + + Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186 Query: 191 HKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + + + LPGFAEG VQD +A + L Sbjct: 187 ALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299 VLD C APGGKT L+ + A + A+D+ +RL ++R NLDRL L A D Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLANMVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKMTRQADDIPALATLQGELLDALWPTLEVGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++++ CS ++ EV++ L +P EL A + L+ EG Sbjct: 367 MLLYATCSTLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 ---------GHDGFYYAKLIKIA 432 >gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20] gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20] Length = 450 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 98/460 (21%), Positives = 191/460 (41%), Gaps = 44/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+++ L+ + + L+ A L+ D+ L+ +V ++ D Sbjct: 10 NPRVLAVQTLAKI-KNGAYSNLQLNQVIKKHA---LNDSDKRLLTTLVYGVIQHRLTFDY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + +++LL ++ Q+ YLD + +A+ + ++E AK + AK V Sbjct: 66 WLTPFIKQ--KKIEPWVRELLYTALFQLQYLDKIPQHAIFNESIEVAKT-LGHIGTAKFV 122 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +IL +SR+ +QR++ + +P W E L G+ + I + Sbjct: 123 TAILHNISRQGLPDINAIQNPIQRLSVEASLPVWLIETLVKQNGEAKTRQIIGSINDAPA 182 Query: 178 IDLTVKFDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + T A++ + + +G+ +QD S Sbjct: 183 QAIRVNTALSTDEAVEQALLDEHFTFVKSKVADHAYVVTGGHVAGSKAYQDGLLTLQDES 242 Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 A +PV+ + + D AAPGGKT Q+ A + ALD+ ++ + N R Sbjct: 243 AMLPVEALQITTQVKTVLDAAAAPGGKTTQIAQYIADDATIIALDIHAHKIRLIEANAKR 302 Query: 286 LHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + +++ FD +LVDAPCS G +RR P++ + + +D++ A Sbjct: 303 LRVSDKITAQVLDARQTANQLTTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVMNLAS 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L V G++V+S C++ +Q++++V+ + L ELVP + + Sbjct: 363 LQGEILDSVSQNVADNGMIVYSTCTILRQENDDVIARFLSKH-TDFELVPTMTNKALKSN 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + I P+ DGFF L++ Sbjct: 422 RQETV-----LHIYPNDY--------HTDGFFVATLKKKT 448 >gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1] gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1] Length = 431 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 114/458 (24%), Positives = 202/458 (44%), Gaps = 45/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N RL++ LL +++ + E DS L +D+ + +V +R Sbjct: 1 MKT--NVRLLAYRLLRKYEKEK-----FILREDVDSVLSFLDDKDRRFFKELVWGVVRKE 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ +L +++ LR+ Q+L+++ V DYA V V+ K N + Sbjct: 54 ELLDWYINQLLKK--KDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK----NEN 107 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 F KLVN++LRR+ + I PEW +F +E VL I PL + Sbjct: 108 FKKLVNAVLRRLRTVPEPKELHL--IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVM 165 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDA 228 L V + T ++ ++ G + +G+ VQ Sbjct: 166 LRVN-SLATTKEEVIKILAEEGTEAVPGKHAPFSLVVRKLGISMNDSRVIKDGLASVQGE 224 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + L VLD CAAPGGKT +L+ K+ A+D+S+ + + + + R Sbjct: 225 SSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELVKDQGKILAVDISREKTQLVEKHAKR 284 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L + + D + FD +LVDAPC+S GT R HP+VL + +D K + Sbjct: 285 LKLSSIETKIADVERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEI 344 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +++ Q ++ GGI+++S C++ K+++ EVV++ + VE++ K ++ Sbjct: 345 QLRMVQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVSERK-DVEVIDTRDKM-KEFEV 402 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ + PD F+ LR++ Sbjct: 403 EGIWDGYGFL-MLPDETITP---------FYVSVLRKM 430 >gi|253997546|ref|YP_003049610.1| sun protein [Methylotenera mobilis JLW8] gi|253984225|gb|ACT49083.1| sun protein [Methylotenera mobilis JLW8] Length = 432 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 110/448 (24%), Positives = 190/448 (42%), Gaps = 38/448 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ + V +LT L S F + + + + TLRF IDA L Sbjct: 6 QIAADAVHQVFA-GRNLTIALPAAL--SLFPNATPQQKGAAADLSYGTLRFYGEIDAYLR 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR---HFAKLVN 125 +L L + LL V++ Q+ + + VV+ AV + + LVN Sbjct: 63 ALLEKPLA--DERIHALLLVAIYQLRHDKADAFTVVNQAVHAVSQLRRPAVKAWAKGLVN 120 Query: 126 SILRRVSREKIELL----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 ++LR R++ +L P+W+ +L+ Y + I + L Sbjct: 121 AVLRNFLRQQAQLTLKLTANEVATYSYPQWWVNKLKTQYP-DAWQGILSVGNQHPPMSLR 179 Query: 182 VKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 V A L + P ++ +PGF++GV VQD A + Sbjct: 180 VNTQKIAIADYLQLLALSEIEATQVGAQSVILTKPVAVEKIPGFSDGVVSVQDYGAQLAA 239 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA-ED 292 L G + + VLD C APGGKT+ ++ + ++TALD RLE+++ NL RLHL A Sbjct: 240 HLIGAEDGMRVLDACCAPGGKTSHILELAKVEMTALDSDALRLERVQSNLARLHLNAQVI 299 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + D+ K FD +L D PC+++G +RRH D+ W R D+ Q K+L Sbjct: 300 AGDAGSADWYDGKPFDRILADVPCTASGIVRRHVDIKWLRRETDVASFVAQQAKILPSLW 359 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + GG +++ CS+ K++++ + + L+ + +L P+ A + Sbjct: 360 QMLAKGGKLLYVTCSVFKEENQAQIDQFLQKNADAQQL-PIEQALAQYNVA--------- 409 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ S+ DGFF L++ Sbjct: 410 ------HIQGQLIPSNSHDGFFYALLQK 431 >gi|241889945|ref|ZP_04777243.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans ATCC 10379] gi|241863567|gb|EER67951.1| ribosomal RNA small subunit methyltransferase B [Gemella haemolysans ATCC 10379] Length = 441 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 93/459 (20%), Positives = 188/459 (40%), Gaps = 39/459 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +NAR ++ +L ++++ L+ + + ++D+ + +V +++ Sbjct: 2 SNINARHIAYEVLYTIIQEDGYSNITLNKYFNQYK---VEEQDKRFISEVVYGSIKNKLY 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ +L R K ++ +L +S+ Q+LY+D ++AV+D AV+ K+ N Sbjct: 59 LEHILKSYSKG---RVKPKVKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKIAGN-ITG 114 Query: 122 KLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 K VN ILR + R ++ + P L+ YG E+ I + Sbjct: 115 KFVNGILRNIERNASNLDLKYKNATEKFCIENSCPSELYNILKIQYGVEKAQKIVISFNE 174 Query: 175 PLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASA 230 + + KL + + + + + F +G + VQD ++ Sbjct: 175 KSKNSIRYNPLKITKKDLIEKLGSAVSESEICEDSLVLNKLNLDSSLFTKGYYIVQDEAS 234 Query: 231 --SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRL 286 +LD CAAPGGK+ + + + + D +L+ + N ++L Sbjct: 235 ALVASSIGLPIDKKYKILDTCAAPGGKSLHIASKYFNSSLISCDKYIHKLKLIEDNKEKL 294 Query: 287 HLYAEDIIEMDA--FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + ++ E DA + FD V+ D PCS G I+ P++ + + A Q Sbjct: 295 GITNIEVKEQDATLNNTSFNNKFDIVICDVPCSGIGVIKNKPEIKYKITNSYVEDIAKLQ 354 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L +VK GI+++S C++DK+++ + ++K L+ + L ++ Sbjct: 355 YDVLDNSKHYVKQEGILMYSTCTIDKRENIKNIEKFLKENK-DFSLESISLKNSIVKTR- 412 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G + I PD DGFF L+++ + Sbjct: 413 ----ENGVLEILPDEYS--------CDGFFIAKLKKMEE 439 >gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 406 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 107/425 (25%), Positives = 181/425 (42%), Gaps = 58/425 (13%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100 +++D+ L +V+ LR+ ID ++FV + + +LRV+ ++L+L+ + + Sbjct: 10 NEKDRALFVELVHGVLRYKSLIDYYINFVAKKGVK--DKRILNILRVATYELLFLEKIPE 67 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE------------LLQRIAGISII 148 YA V+ A E A + N H VN+ILR + R K + ++ Sbjct: 68 YATVNEACEVASKI--NPHLKAFVNAILRNIIRNKNQIEESLERIKDVDYKSYLSIKLSY 125 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI-- 203 P + + LE YG E+ + I + + + + ++ T +L Sbjct: 126 PRFLIDYLEESYGLEKTIKILEFLNTKPPQSIKINTKKTNVNTLTQELEKNGFKYEINSR 185 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGK-TA 257 + L +I + EG ++ QD ++S+ V+DLCAAPGGK Sbjct: 186 NNEIVLILKGNIKETELYKEGYFYFQDLASSLVVKFNQEDFKRAKKVIDLCAAPGGKTFN 245 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAP 315 V V A D+++ +L+ LR N+ RL + + F+ + FD V+ D P Sbjct: 246 CAEVIDGFVVACDINEHKLDILRENILRLGFDNIIVAKSNAEVFNPDFAEKFDIVIADLP 305 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 C+ G IR+ PD+ W + DI Q ++L ++K GGI+ +S C+L K+++EE Sbjct: 306 CTGFGAIRKKPDIKWNKSYQDIENLHELQVRILDNSAGYLKRGGILFYSTCTLGKKENEE 365 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V + L LV L + I PD E DGFF Sbjct: 366 TVIEFLEKHK-DFSLVSLTT-------------------IFPDEFE--------CDGFFI 397 Query: 436 VALRR 440 LR+ Sbjct: 398 AKLRK 402 >gi|215403254|ref|ZP_03415435.1| fmu protein (sun protein) [Mycobacterium tuberculosis 02_1987] gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuberculosis 02_1987] gi|289685686|gb|EFD53174.1| sun protein [Mycobacterium tuberculosis 02_1987] Length = 768 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + +L A R + RD + T R +DA Sbjct: 326 PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 382 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 383 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 441 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +LR ++ A + P W + + G + A+ Sbjct: 442 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 501 Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + + T + + + L +G VQD Sbjct: 502 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 561 Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA L A+VTA++ S R + + Sbjct: 562 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 621 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N L +++ +D FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 622 AQNTR--GLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 678 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR+LL I+ +PGG+V+++ CS ++ V LR P+ Sbjct: 679 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHAL-----DTRPL 733 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L +++ P G D FA ALRRL Sbjct: 734 FEPVIAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 768 >gi|322373356|ref|ZP_08047892.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C150] gi|321278398|gb|EFX55467.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. C150] Length = 443 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 114/452 (25%), Positives = 203/452 (44%), Gaps = 36/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L V ++ L+ S L+ +D+ LV +V T+ ++ + Sbjct: 12 ARGQALEVLEEVFQEGAYSNIALNARLSKSH---LTDKDKALVTEMVYGTVARKITLEWI 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L V+ + + + LL +S+ Q+ YLD + +AVV+ AV AK + KL+N Sbjct: 69 LAHVIE-DRDKLEAWVYDLLLLSLYQLAYLDKIPAHAVVNDAVSIAKNRGNKKGAEKLIN 127 Query: 126 SILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 ++LR+ + + +R + +P W ++L + YG++R LAI + + Sbjct: 128 AVLRKLSSQPLPDPSKIKRVNKRYSVQYSLPVWLVKKLIDQYGEDRALAIFQSLFVRNKA 187 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +E A A + L + F EG+ +QD ++ + Sbjct: 188 SVRVTDVSRMEEIADATGAERSELSPVGLVKSSGYFAGTEYFKEGLLTIQDETSQLVAPT 247 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 G +LD CAAPGGKT + ++ VTALD+ +L+ ++ N RL L Sbjct: 248 LGIQGEEEILDACAAPGGKTVHMASYLTSGHVTALDLYDHKLDLIKENAQRLGLADKVKT 307 Query: 294 IEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++D P FD +LVDAPCS G IRR PD+ + +D D Q +L Sbjct: 308 QKLDASQVHRVFPADSFDKILVDAPCSGIGLIRRKPDIKYNKDLQDFASLKAVQLDILSS 367 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++EV+Q L + P ++ + ++ +A++PE Sbjct: 368 VCQTLRKGGIITYSTCTIIAEENQEVIQAFLETHPDFEQVALDHPCQNIMVNGCLAITPE 427 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ DGFF LR+ Sbjct: 428 QYL----------------TDGFFIAQLRKKA 443 >gi|326693796|ref|ZP_08230801.1| 16S rRNA methyltransferase B [Leuconostoc argentinum KCTC 3773] Length = 452 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 103/459 (22%), Positives = 192/459 (41%), Gaps = 44/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+++ L+ + + L+ L + D+ L+ +V ++ + Sbjct: 10 NPRVLAVQTLAKI-KNGAYSNLQLNQVIK---QHQLGEADKRLLTTLVYGVIQHRLTFEY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + +++LL ++ Q+ YL+ + +A+ + ++E AK + AK V Sbjct: 66 WLAPFV--GDKKLNPWVRELLYTALFQMQYLNKIPQHAIFNESIEVAK-ILGHVGTAKFV 122 Query: 125 NSILRRVSREKIELLQRIAG-------ISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +IL +SR+ + IA + +P W L G+ A+ Sbjct: 123 TAILHNISRQGLPDTAAIADPITRLSVEASLPVWLINELVAQNGEAATRALVATINDAPM 182 Query: 178 IDLTVKFDIET--------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + T + + A + S + +G +QD S Sbjct: 183 QSVRVNTVLATDEEVVASLASENMTATKSQVADHAYIVSGGHVASSTAYQKGWLTLQDES 242 Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 A +PV+ + + D AAPGGKT Q+ + AK+ ALDV +++ + N R Sbjct: 243 AMLPVESMHLTPAVKNVLDAAAAPGGKTTQIAALVADDAKILALDVHPHKIKLIEQNATR 302 Query: 286 LHLYA-EDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L + D +DA + FD +LVDAPCS G +RR P++ + + +D+ A Sbjct: 303 LQVADRIDTQVLDARKVPTEVATKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVQNLAR 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L V G++V+S C++ +Q++++V+ + L P ELV +A+ D Sbjct: 363 LQGEILDSVSQNVAENGMIVYSTCTILRQENDDVIAQFLAKHP-EFELVKTQTAHDLKAD 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A+ + I P+ DGFF L++ Sbjct: 422 RQKAV-----LHIYPNDY--------HTDGFFVATLKKK 447 >gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. capri str. GM12] gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. capri str. GM12] gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 419 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 95/453 (20%), Positives = 192/453 (42%), Gaps = 53/453 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN+R ++ +L V + LL+ + L+Q+D+ V +V+ + +D Sbjct: 1 MNSRSIAFDILKKVFVNKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L ++ + + LQ +L +S+ Q++YL+ + +YA+V+ ++ K ++ A Sbjct: 57 YLLGKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESINLIKTT--SQKQANF 112 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+IL + R K + L+ + L Y KE V I Sbjct: 113 INAILNKFLRFKDKYLEINLDNKDLELCILHSFSYELYLMLIKQYDKEIVNQIVVNNHQI 172 Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + V T N ++ T ++I++ + G +QD ++ Sbjct: 173 PKLYIRVNTLKITSDQLFNKYKDIYLLEKTNVKDCLIANKTIINSDLYKNGFITIQDKAS 232 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + Q+ N VLD+C+APGGK L + + + ++++ +++ ++ N++RL+ Sbjct: 233 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIVGNEINESKIKLIKENINRLN 292 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I MDA K+ FD +L+DAPCS G +R P++ D + Q +L Sbjct: 293 CLNISVINMDARKIKQKQEFDYILLDAPCSGFGVFKRKPEIKLRFDQIQVNSIINLQEEL 352 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K G +V+S C++++ +++ + K L ++L Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQINKFLNKHKDMIKL----------------- 395 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++I G DGF+ L++ Sbjct: 396 -----------YEQQIFGFEENTDGFYICKLKK 417 >gi|237745177|ref|ZP_04575658.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1] gi|229432406|gb|EEO42618.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1] Length = 435 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 200/452 (44%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V K L+ + ++ +++ + I +R +D Sbjct: 1 MNVKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D + +V A E K+ +K + Sbjct: 57 YIIERYTK---EIKKEWIRNLLRISIYQITFMDSDNKGIVWEATELTKKKYGMT-ISKFI 112 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + + IP+WF + LE YG + + + Y+ Sbjct: 113 NGTLRNYLRNKDTELKRLDDEKNYEVLYSIPKWFYDILEKQYGDKNLKQAITSLKKVPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I+ F G QDAS+ + Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIIISEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + G L+N VLD+CAAPGGKTA + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIAIDIHQHKIKLIETNMKKLGID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ ++I + A Q ++L Sbjct: 293 IVKAIVMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++S C++ +++ ++K L+ + Y Sbjct: 353 NSAADILKDGGELIYSTCTITDKENTNNIEKFLKERKQF----KVEKLYIPENVSGDYDK 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G+ I+ MD F+ + L++ Sbjct: 409 LDGF---------CINYKEEIMDNFYIIKLKK 431 >gi|119961729|ref|YP_947575.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter aurescens TC1] gi|119948588|gb|ABM07499.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter aurescens TC1] Length = 516 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 168/471 (35%), Gaps = 46/471 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L V + +L + L +RD + LR DA Sbjct: 60 PARLVAFEVLRAVASEDAYANLVLPARIREHR---LDRRDAGFATELSYGALRGQGTYDA 116 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L + ++ LR+ Q+L + V +A +D V A+ + L+N Sbjct: 117 ILARCVDRPLEQLDPAILDALRIGAHQLLSMRVPAHAALDQTVGLARAVIG-AGPSALIN 175 Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKE-----RVLAI 168 ++LR+V+ + + A PEW L + A+ Sbjct: 176 AVLRKVTAHSMGEWLEILLDDESDETKIAALRHAHPEWIVRALRQSLVNHGRPKTEIDAL 235 Query: 169 SDACISPLYIDLTVKFDIETWAHKLN--AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 +A + ++L + + A + G VQ Sbjct: 236 LEADNAAPVVNLVALPGLGDLDEAFDHGATAGELVEDSALSAGGDLGRFESVRRGTTRVQ 295 Query: 227 DASASIPVQL-------FGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKRR 275 D + + + LDLCA PGGK A L GA + A + + R Sbjct: 296 DVGSQLVARALAGVELGESPAQGERWLDLCAGPGGKAALLAALAYRDGATLLANEPAPHR 355 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + ++ L + A + D + ++ FD VLVD PCS G +RR P+ W R Sbjct: 356 AKLVQQALSAVPSEAWTVRTGDGREVGAEQPETFDRVLVDVPCSGLGALRRRPESRWRRS 415 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 DI QR LL + VKPGG+V + CS ++ VV VL L Sbjct: 416 PKDIGDLGPLQRDLLKSALDAVKPGGVVAYVTCSPHPAETTAVVTDVLAKREDLELLDAG 475 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + S+ ++ E ++ P + D F +R+ +P Sbjct: 476 QALDDVSLTGSLGAGHELTAQLWPHV--------HQTDAMFMAIIRK--KP 516 >gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulcerans Agy99] gi|118569528|gb|ABL04279.1| Fmu protein [Mycobacterium ulcerans Agy99] Length = 457 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 108/463 (23%), Positives = 172/463 (37%), Gaps = 46/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + + L V + +L + R ++ RD L + R +DA Sbjct: 15 PARGAAFNALRAVSERNAYANLVLPALLRE---RGITGRDAALATELTYGACRARGLLDA 71 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 72 IIGAAAGRSPEAIDPFLLDLLRLGAYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISD 170 ++LR ++ + A + P W + + G A+ Sbjct: 131 AVLRTIADRDEQSWVQELAPDPRRDPVGHAAFVHTHPRWIAQAFADALGPSAAELDAVLA 190 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + A ++ + + L L +G VQD Sbjct: 191 SDDERPQVHLAARPGVLTAAALADEVRGTVGRYSPYAVYLLGGDPGLLAPVRDGQALVQD 250 Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA + +GA+VTA++ S R + + Sbjct: 251 EGSQLVARALTLAPVEGDSGRWLDLCAGPGGKTALLAALGVATGARVTAVEPSSHRADLV 310 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N D++ D + +FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 311 ADNT---GGLPVDLVRGDGRYTDLEPVFDRVLVDAPCTGLGALRRRPEARWRRQPSDVPT 367 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 QR+LL I+ +PGG+V ++ CS ++ VV LR P V Sbjct: 368 LVKLQRELLAAAINLTRPGGVVFYATCSPHLAETVGVVADALRRHP-----VDALDTRAL 422 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L ++++ P G D FA ALRR Sbjct: 423 FEPITEGLGEGPYVQLWPH--------RHGTDAMFAAALRRRA 457 >gi|313496438|gb|ADR57804.1| RsmB [Pseudomonas putida BIRD-1] Length = 436 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 124/443 (27%), Positives = 195/443 (44%), Gaps = 42/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + + +RD+ L + + T R+ PR+D + +L Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +Q LL V + Q+ Y + +A + V A + K+ L+N++LRR RE E Sbjct: 69 ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127 Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 + + + P W ++ L+ F+ E+ AI A + + L V + + Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186 Query: 191 HKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + + + LPGFAEG VQD +A + L Sbjct: 187 ALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299 VLD C APGGKT L+ + A V A+D+ +RL ++R NLDRL L A D Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLAHVVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++++ CS ++ EV++ L +P EL A + L+ EG Sbjct: 367 MLLYATCSSLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 ---------GHDGFYYAKLIKIA 432 >gi|87201108|ref|YP_498365.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444] gi|87136789|gb|ABD27531.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444] Length = 419 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 145/440 (32%), Positives = 209/440 (47%), Gaps = 34/440 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ +R + LL V+R+ L D+ L AI LR++ Sbjct: 11 PGVASRRAALRLLDAVLRRGDPLDQAAPPVLRGIER----GADRALALAIAQEALRWMAD 66 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA++D LP + +LR+ +AQ L LD+ +AVV + R A Sbjct: 67 LDALIDGATRQILPE-DAKARSVLRIMLAQALRLDMPGHAVVATGLPLL--MGGPRRLAH 123 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 V S + + E +P R + + +RV I+ P +DLT+ Sbjct: 124 GVFSAVTKGDARLPE-------APTLPPAVAARWQAAWP-DRVDGIARGLAEPPPLDLTL 175 Query: 183 KFDIET--WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + ET WA +L + L G +R+ +I +LPGFAEG WWVQD +AS+P +L G Sbjct: 176 RDPAETAQWAERLGGMSLAPGHVRIARA-GAIEALPGFAEGAWWVQDLAASVPARLLGAG 234 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 LDLCAAPGGKT QL +G VTALD S RR+E+L NL R L AE + DA Sbjct: 235 EGRRALDLCAAPGGKTLQLAAAGWSVTALDKSARRVERLEDNLKRSQLEAEVV-VADALK 293 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + P+ FDA+L+DAPCS+TGT RRHPDVL D + Q+ +L + ++ PGG Sbjct: 294 WQPEVKFDAILLDAPCSATGTCRRHPDVLHRNPGID--ELVALQKAMLERAAGWLAPGGR 351 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL+ ++ E + +P+ A +GW R P ML Sbjct: 352 LVYAVCSLEPEEGEAQAAAF-----TGLAPLPIGDDELPGGLKA----ADGWFRSDPGML 402 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G+DGFFA + Sbjct: 403 ADA----GGIDGFFAARWVK 418 >gi|148545339|ref|YP_001265441.1| sun protein [Pseudomonas putida F1] gi|148509397|gb|ABQ76257.1| sun protein [Pseudomonas putida F1] Length = 436 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 123/443 (27%), Positives = 195/443 (44%), Gaps = 42/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + + +RD+ L + + T R+ PR+D + +L Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +Q LL V + Q+ Y + +A + V A + K+ L+N++LRR RE E Sbjct: 69 ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127 Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 + + + P W ++ L+ F+ E+ AI A + + L V + + Sbjct: 128 LLAGMERDPVVRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186 Query: 191 HKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + + + LPGFAEG VQD +A + L Sbjct: 187 ALLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299 VLD C APGGKT L+ + A + A+D+ +RL ++R NLDRL L A D Sbjct: 247 VLDACCAPGGKTCHLLEAEAGLAHMVAIDLEAKRLTRVRENLDRLQLDAELIACDARDTA 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALATLQGELLDALWPTLEVGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++++ CS ++ EV++ L +P EL A + L+ EG Sbjct: 367 MLLYATCSSLPTENTEVIKAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 ---------GHDGFYYAKLIKIA 432 >gi|72383594|ref|YP_292949.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus str. NATL2A] gi|72003444|gb|AAZ59246.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 438 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 190/469 (40%), Gaps = 61/469 (13%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK G++AR + ++ V L+ + +F+ + D+ L+ + +R Sbjct: 1 MK-GLDARKAAWDVIQAV-GGGAFADVALERIFNLYSFKSI---DKGLITELSYGAIRQR 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +D +D++ ++ L+ LL + + Q+L + + A ++ VE AK + Sbjct: 56 YYLDCWIDYLGKVPAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAKTYHL-KK 114 Query: 120 FAKLVNSILRRVSREK---------IELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 A +VN ILR R K +A +P W + L + G E I+ Sbjct: 115 LAPVVNGILRSALRSKERGLLLPKSNNPSLELAKNESLPLWLADELIKWKGLEDAKKIAK 174 Query: 171 ACISPLYIDLTVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAE 220 A ID+ V A+ G+ ++ PG+ E Sbjct: 175 AFNCISPIDIRVNRLRADLKEVKEIFDSCGIHNQAIPNCPYGLEVRAGVGEPRKWPGYEE 234 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G W VQD S+ + G L +LD CAAPGGK+ + I + + ++D S RR + Sbjct: 235 GKWSVQDRSSQLIAPSLGPLPGEKILDACAAPGGKSTHIAELINNEGNLWSVDRSSRRSK 294 Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 K+ N +RL I+ D+ + K FD +L+DAPCS GT+ RHPD W Sbjct: 295 KILANSERLGTKCLQILVADSNELLLKNPDWKGFFDRILIDAPCSGLGTLARHPDARWRM 354 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + D+I + Q +LL +K GG +V+S C++ +++ ++ L+S + Sbjct: 355 NQDNIQQLVAVQSQLLNSLAPLLKNGGKLVYSTCTIHPEENSHQIKNFLQSKSEFLL--- 411 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +I P DGF+ L +L Sbjct: 412 -----------------EYEKQIWPGEG-------DNGDGFYISVLNKL 436 >gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569692|gb|ADL45894.1| Fmu (Sun) domain protein [Micromonospora aurantiaca ATCC 27029] Length = 549 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 96/463 (20%), Positives = 164/463 (35%), Gaps = 44/463 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ ++ V R +L + L+ RD + TLR +DA+ Sbjct: 103 PRQIAYEAIAAVHRDDAYANLVLPAMLRE---AGLTGRDAAFATELTYGTLRHTGTLDAI 159 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + R ++ LR+ QIL+ V +A V V+ + N+ Sbjct: 160 VTDAAGRDVQRIDPPVRDALRLGAYQILHTRVPAHAAVSSTVDLVRSV--GPGATGFANA 217 Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171 +LR ++ + +A P+W G + + Sbjct: 218 VLREITSRDADAWVAKLAPAQETDPIGHLALAYSHPQWIVRSFAEALGADMGETTRLLIE 277 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L + D A ++ + + LP A+G VQD Sbjct: 278 DNERPPVHLCARPGLADPVALADEVGGAPGAFSPYAVYLPGGAPGDLPAVADGRAHVQDE 337 Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLR 280 + + + LDLCA PGGK A GA++TA++V++ R + Sbjct: 338 GSQLVADALVAAPLDGPDGRWLDLCAGPGGKSGLLGALAATRGARLTAVEVAEHRARLVA 397 Query: 281 CNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L + + + P++ FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 398 QATRGLPVTVVHTDGRTVGSDPKLPEEHFDRVLVDAPCTGLGALRRRPESRWRRQPSDLP 457 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 QR+LL G+ +PGG+V + CS ++ V + R V+ V Sbjct: 458 PLTRLQRELLTAGLRAARPGGLVAYVTCSPHVVETHVTVTEAARRCGFDVDFVDARPLLP 517 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L +++ P G D F LRR+ Sbjct: 518 AGMP---GLGDGPTVQLWPH--------RHGTDAMFLAVLRRV 549 >gi|29655200|ref|NP_820892.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii RSA 493] gi|161829958|ref|YP_001597731.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii RSA 331] gi|1169714|sp|P45679|RSMB_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|29542472|gb|AAO91406.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii RSA 493] gi|161761825|gb|ABX77467.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii RSA 331] Length = 430 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 119/456 (26%), Positives = 215/456 (47%), Gaps = 48/456 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ L++ V++K+ SLT LL ++++Q L++ + TLR+ ++ Sbjct: 1 MNTRATTAILVNQVVQKKCSLTALLSA----------NKKNQSLIQELCYGTLRWYFKLK 50 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + +L + L K + + L+ Q+ YL++ + +V+ V A+ K+ L+ Sbjct: 51 LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYLNIPTHTIVNQTVGAAEILKKP-WAKGLI 109 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N +LRR EK + I G P WF + ++ + + I++ P+ + Sbjct: 110 NKLLRRFIAEKDELLTFTEKTIEGQYAHPLWFIQHIKKAWPDHWESILIANNARPPMTLR 169 Query: 180 LTV-KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + K E + L+ + + P S+ LPGF EG ++QDA+ Sbjct: 170 VNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVHQLPGFNEGYCYIQDAAGQF 229 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLY 289 L NN +VLD CAAPG KT+ ++ + A+D +K+RL +++ N+ RL L Sbjct: 230 AAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENITRLGLR 289 Query: 290 AEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 E + + + +LFD +L+DAPCS+TG IRRHPD+ R DI + + Sbjct: 290 QEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATGVIRRHPDIKLLRQPGDISQYHQKK 349 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +LL + +K GG +++S CS+ ++E+V+++ L + VEL P N Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTH-DKVELSPTNV--------- 399 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +++ + DGF+ L + Sbjct: 400 -----HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 428 >gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata obscuriglobus UQM 2246] Length = 465 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 109/433 (25%), Positives = 172/433 (39%), Gaps = 61/433 (14%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V++ +L+ + L+D LS +D+ V +V +R +DA+ Sbjct: 5 ARQVAADVLNRSRSRDGFAAELVDDAVNA---ANLSPQDRRFVTQLVFGVIRRGGTLDAL 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LLR+ Q+ +L V +A V VE A+ VN Sbjct: 62 LKPFIHLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAE-HVGAPKAKGFVN 120 Query: 126 SILRRV---------------------------------------------SREKIELLQ 140 +LRR+ + Sbjct: 121 GVLRRIAELTTDEFTDAPGAAAVPFALVESAPTPSEGGGRGSYRRLTKPVLPDPATDPAP 180 Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVM 197 A P+W R YG + + + + + + V E++ +L A Sbjct: 181 YFAAAFSFPQWLANRWLKRYGVDECVRLGFWFNAAPPLWVRVNKLRASRESYRIQLAAQT 240 Query: 198 LPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + + SI LPG+AEG + VQD S+ + G + +LD CAAP Sbjct: 241 IEVEPGEHPQALRFSQHHSIRDLPGYAEGDFAVQDHSSMLVASALGVQPGMRILDACAAP 300 Query: 253 GGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 GGKT L+ +TA D+ +RLE + R+ L + + + + P FDA Sbjct: 301 GGKTTHLMELMDGRGHITACDIDPKRLETVAALAQRMRLTGIETVLLKDNEEFPAGPFDA 360 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 LVD PCS+TG I R P+V W ++ Q +LL+ VKPGG VV+S CS++ Sbjct: 361 ALVDVPCSNTGVIGRRPEVRWRLKPNEFEYLIRLQTRLLILAADRVKPGGAVVYSTCSIE 420 Query: 370 KQDSEEVVQKVLR 382 ++E VV+ VLR Sbjct: 421 PDENEGVVKAVLR 433 >gi|328950801|ref|YP_004368136.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884] gi|328451125|gb|AEB12026.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884] Length = 417 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 106/435 (24%), Positives = 172/435 (39%), Gaps = 34/435 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ H+L V + LD ++ LS D+ L + TLR L +D + Sbjct: 15 ARGLALHVLEAV-ARGQYAQPTLDRALQNTR---LSPEDRGLATHLTYGTLRHLRYLDHL 70 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + ++ LR + L+L+ YAVV VE+ KR A L N+ Sbjct: 71 LAPHLNAP-HHLPPPVRWALRAGAYERLFLEHPAYAVVHSWVEETKR--RAPRLAGLTNA 127 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD- 185 +LRRV+ + A IP++ + F+G ++ P + +T Sbjct: 128 VLRRVTHREAPP----AVRLSIPDFLHDHWRIFFGDA---GFAEGFNQPEPLWITAYPGA 180 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 E + A L + +L + +G+ Q+ ++ QL V Sbjct: 181 REALEAQGVAYRPGPVPDSLALEGARLRALEAYRQGLLQPQNPASLFAAQLLDPPPGAKV 240 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LDL G K L GA+V + D + +R R R L D P+ Sbjct: 241 LDLAGGAGLKALYLAARGARVVSYDKNPKRQATGRATPARTGLR-VAFKTQDLTRPIPET 299 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 VL+DAPC+ TGT R +P++ + D + QR LL V+PGG +V++ Sbjct: 300 AP-FVLLDAPCTGTGTFRGNPEIRYRLRPQDPQALSTLQRALLETAARAVEPGGRLVYAV 358 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+L + + E V + L P L P + AL + + + P Sbjct: 359 CTLTEAEGEAVTRAFLEQHP-EFTLEPFTPPFP-------ALKQDLGVYVRP-------- 402 Query: 426 VSSGMDGFFAVALRR 440 +G+DGF+ R+ Sbjct: 403 -ENGLDGFYYARFRK 416 >gi|315503248|ref|YP_004082135.1| fmu (sun) domain protein [Micromonospora sp. L5] gi|315409867|gb|ADU07984.1| Fmu (Sun) domain protein [Micromonospora sp. L5] Length = 541 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 95/463 (20%), Positives = 163/463 (35%), Gaps = 44/463 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ ++ V R +L + L+ RD + TLR +DA+ Sbjct: 95 PRQIAYEAIAAVHRDDAYANLVLPAMLRE---AGLTGRDAAFATELTYGTLRHTGTLDAI 151 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + R ++ LR+ QIL+ V +A V V+ + N+ Sbjct: 152 VTDAAGRDVQRIDPPVRDALRLGAYQILHTRVPAHAAVSSTVDLVRSV--GPGATGFANA 209 Query: 127 ILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDA 171 +LR ++ + +A P+W G + + Sbjct: 210 VLREITSRDADAWVAKLAPAPETDPIGHLALAYSHPQWIVRSFAEALGGDMGETTRLLIE 269 Query: 172 CISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L + D A ++ + + LP +G VQD Sbjct: 270 DNERPPVHLCARPGLADPVALADEVGGAPGAFSPYAVYLPGGAPGDLPAVTDGRAHVQDE 329 Query: 229 SASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLR 280 + + + LDLCA PGGK A GA++TA++V++ R + Sbjct: 330 GSQLVADALVAAPLDGPDGRWLDLCAGPGGKSGLLGALAATRGARLTAVEVAEHRARLVA 389 Query: 281 CNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L + + + P++ FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 390 QATRGLPVTVVHTDGRTVGSDPKLPEEHFDRVLVDAPCTGLGALRRRPESRWRRQPSDLP 449 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 QR+LL G+ +PGG+V + CS ++ V + R V+ V Sbjct: 450 PLTRLQRELLTAGLRAARPGGLVAYVTCSPHVVETHVTVTEAARRCGFDVDFVDARPLLP 509 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L +++ P G D F LRR+ Sbjct: 510 AGMP---GLGDGPTVQLWPH--------RHGTDAMFLAVLRRV 541 >gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri ATCC 11577] gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri ATCC 11577] Length = 444 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 42/463 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK N R ++ L ++ + +S D+ L IV ++ Sbjct: 1 MKYQTNNPRELAVRTLLR-TSGGSYSNLQINAVIEST---SMSDVDKALFTNIVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN- 117 ++ L L + + +++LL ++ Q+ YLD V A+ D +++ AK + Sbjct: 57 RMTLEYQLVPFL-KDPEKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDG 115 Query: 118 -----RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++ R + + +++I+ +PEW +E GK++ + + Sbjct: 116 TRRFVTGILHQMDRKGVREPDKIKDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSL 175 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224 + +L T + +V F G+ Sbjct: 176 NQTPKQSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLT 235 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282 +QD SA +PV+ + +LD C+APGGKT Q+ + +V ALD+ + +L+ + N Sbjct: 236 IQDESAMLPVESMSIQPDDLILDACSAPGGKTTQIAANLKNGRVIALDIHQNKLKNVIRN 295 Query: 283 LDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL + + + ++FD +LVDAPCS G +RR P++ + + DI Sbjct: 296 AKRLGVDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADIN 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q ++L VK GG + +S C++ +Q+++EV+++ L + P Sbjct: 356 HLSQIQLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDF-------QIEP 408 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + G I I PD G DGFF +L R Sbjct: 409 TKTDLNLTTDENGMINIYPDDF--------GSDGFFVCSLVRK 443 >gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amycolatum SK46] gi|213951720|gb|EEB63108.1| Fmu protein [Corynebacterium amycolatum SK46] Length = 485 Score = 216 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 160/459 (34%), Gaps = 42/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R V+ +L+ V LL L RD + TLR +DA Sbjct: 43 QPRKVALKVLADVRENDAYANLLLPKLLKAHK---LKGRDAAFATELTYGTLRAEGLLDA 99 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ L + +LR+ Q+L V YA VD +V + VN Sbjct: 100 VIEASSSRPLSDIAGPVMDVLRLGTYQLLRTRVDAYAAVDTSVRSVAKVAGP-GARGFVN 158 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +ILR+VS + +A P W G + + Sbjct: 159 AILRKVSSQTESEWVSEIAPDPATDPIGYVAMKHAHPRWIAMEFARALGAQAGELQQALA 218 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 A + + L + E A P ++ + L +G+ VQD Sbjct: 219 ADDARPLVHLVARPGEITAEELALITGGEEGPWSPYCVRLDSGAPGELEPVRQGLAAVQD 278 Query: 228 ASASIPVQLFGTLNN-----LSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRC 281 + + + LDLC+ PGGK+A + A A LD + + Sbjct: 279 EGSQLIARAVTKAPVAGEDSGRWLDLCSGPGGKSAFIGGIAAIEGAKLDAVEVSATRAEL 338 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + D D + FD +LVDAPCS G++RR P+ W + D+ Sbjct: 339 VKKATAGLPVTVTVADGRDTGLETGFDRILVDAPCSGLGSLRRRPEARWRKSPSDLNSLT 398 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL + + +PGGI+V+S CS +++ +V + + EL + + Sbjct: 399 TLQFELLSEAVRLARPGGIIVYSTCSPHLRETRGIVDRAV------TELPVTELNAHELV 452 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +++ P G D F LR+ Sbjct: 453 APMTDVGPYPSVQMWPH--------RHGTDAMFFSVLRK 483 >gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii PG50] gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii PG50] Length = 423 Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 193/454 (42%), Gaps = 53/454 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M +R ++ +L V + LL+ + L+Q+D+ V +V+ + +D Sbjct: 1 MTSRSIAFDILKKVFINKAYSNVLLNKISKKN----LNQQDKDFVFNLVHGVISNKIHLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L ++ + + LQ +L +S+ Q++YL+ + +YA+V+ +V K ++ A Sbjct: 57 YLLAKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 112 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+IL + R K + L+ + L Y K+ V I Sbjct: 113 INAILNKFLRFKDKYLEINLANKDLELCILHSFSYELYLMLIKQYDKDIVNQIVVNNQQI 172 Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + T N ++ T ++I++ + G +QD ++ Sbjct: 173 PKLYIRINTLKITSDQLFNKYKDIYLLEKTNVNDCLIANKTIINSDLYKNGFITIQDKAS 232 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + Q+ N VLD+C+APGGK L + + + A ++++ +++ +R N++RL+ Sbjct: 233 ILVSQILNPSLNAKVLDICSAPGGKLTHLSMILKNTGNIIANEINESKIKLIRENINRLN 292 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +I MDA K+ FD +L+DAPCS G +R P++ D + Q +L Sbjct: 293 CLNISVINMDARKIKQKQEFDYILLDAPCSGFGVFKRKPEIKLRFDQTQLNNIINLQEEL 352 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K G +V+S C++++ +++ + K L V+L Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQITKFLNRHKDMVKL----------------- 395 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I G DGF+ L++L Sbjct: 396 -----------YEKQIFGFEENTDGFYICKLKKL 418 >gi|294625236|ref|ZP_06703876.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666265|ref|ZP_06731516.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600464|gb|EFF44561.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603974|gb|EFF47374.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 436 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 204/453 (45%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L L RD+ LV AI +R P Sbjct: 7 TAGVASRLAAARVLTAVFDQGRSLKAELALTLPGIG----DPRDRALVEAICFAVIRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + L L +LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 63 AYELALRQWLERALPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + A + P W +++L + + + + A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D T+ +L + + + + LPGFAEG VQD SA Sbjct: 179 QRSRTDPATYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + VLD CAAPGGK A G ++ ALDV RRLE+++ L R A+ Sbjct: 239 ADALTLARSARVLDACAAPGGKAAHLLERHPGLQLVALDVDARRLERVQQTLQRTVPNAQ 298 Query: 292 DIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ D + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALQAADAADTEAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ +P PL + + + Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTP-DARAQPLGAQFGHAAGAG--- 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + DGFF L + Sbjct: 415 -------------RQRFPGEAHCDGFFYALLLK 434 >gi|87125560|ref|ZP_01081405.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9917] gi|86166860|gb|EAQ68122.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. RS9917] Length = 454 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 181/471 (38%), Gaps = 67/471 (14%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ R V+ +L V L+ LS D+ L + +R Sbjct: 13 TTGLGPRRVAWEVLEAV-AAGAYADVALERALR---GAGLSGADRGLATELAYGAIRRRL 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA LD + ++ L+ LL V + Q+ ++ + A V+ VE AK + R Sbjct: 69 WLDAWLDRLGRVPARKQPPRLRWLLHVGLYQLFWMERIPAAAAVNTTVELAKHHRLAR-L 127 Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFY------GKERV 165 A +VN +LR + +R++ +P WF L + Sbjct: 128 APVVNGLLRAALRARQAGDTLAMPADAAERLSLEQSLPLWFCRELLAWTGDVGCAAIPAA 187 Query: 166 LAISDACISPLYIDLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSL 215 I+ AC +DL V T + G+++ + Sbjct: 188 ERIAAACNQVPPLDLRVNRLRSTPEAVAAAFAAAGLATRPIEGCGSGLQVLGAAGDLRQW 247 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVS 272 PG+AEG W VQD +A L +LD CAAPGGK+ L I +V A+D S Sbjct: 248 PGYAEGHWCVQDRAAQWVAPLLEPRPGERLLDACAAPGGKSTHLAELIGDAGEVWAVDRS 307 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPD 327 RL++L N RL + + DA + ++ F VL+DAPCS GT+ RH D Sbjct: 308 AGRLQRLAANAARLGCGCVNALAADACELLQERPQWRGAFQRVLLDAPCSGLGTLARHAD 367 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 W I + Q +LL ++ + PGG +V++ C++ +++ + L + P Sbjct: 368 ARWRVTPATITELLPLQARLLEAMLALLAPGGRLVYATCTIHPAENQNQIATFLAAHPE- 426 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +T ++ +G DGF+A + Sbjct: 427 ---------------------------LTLHSEQQRWPDPAGGDGFYAAVI 450 >gi|297626327|ref|YP_003688090.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922092|emb|CBL56660.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 439 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 111/452 (24%), Positives = 170/452 (37%), Gaps = 35/452 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + +L V R+ D + L+ RD V + T R L DA+ Sbjct: 4 PRRTAFEILREVDRRGAYANLATRQAIND---QELTGRDAAFVTELAYGTCRMLGTYDAI 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + + LR+ Q+L + + D A VD V+ A R A L N+ Sbjct: 61 LAQASGRDLNDLQPDIVDALRLGAHQLLGMRIPDRAAVDTTVDLAAIVVGER-VAGLANA 119 Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 I+R+V+ +E +S P+W + ++ E V A A Sbjct: 120 IMRKVAAHDLEAWCRQLAYDEQDFRCLVSGHPDWIVDAYQDLLPTEEVDAALAADNIAPV 179 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 L V+ + L PT P + L +G VQD + + Sbjct: 180 PTLVVRPGLYKRKDLLRDGGDPTRWSPWGVIRPGNPGDLGAVRDGRAGVQDEGSQLICLA 239 Query: 237 FGTLNNLS---VLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + LD+CA PGGK+A GA +TA +V R + +L R Sbjct: 240 ATRADIPRDLPWLDMCAGPGGKSALLRGMAPEHGAFLTASEVQPHRAHLVAQSLRRYPAE 299 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + I D + F V+ D PCS G +RR PD W +D DD+V+ QR LL Sbjct: 300 GHETICADGTAPAWQRDSFGLVMADVPCSGLGALRRRPDARWRKDVDDLVELGDLQRSLL 359 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +PGG+V + CS + +S ++V L + L A + A A + Sbjct: 360 SSALDACRPGGVVAYVTCSPHRMESADIV---LADTSRFEILDA--PALIPEVPGAAAST 414 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I++ P G D F LR+ Sbjct: 415 DARFIQLWPH--------RHGTDAMFMALLRK 438 >gi|50086581|ref|YP_048091.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ADP1] gi|49532555|emb|CAG70269.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ADP1] Length = 434 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 199/454 (43%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +N R L V ++ SL+ +L + D + +RD+ L +V TLR Sbjct: 8 STELNLRAQVVATLLKV-QQGQSLSGILHQQLND-----IPERDRALFHELVLGTLRQWY 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + ++ +L L +++ L + + Q+L + +A + V A + + Sbjct: 62 ALKSITLPLLTKPLN--NETVETCLYLGLYQVLCTRIPAHAAISETVT-ATKQLGFHALS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +VN+ILRR +RE + +P W +RL+ + ++ + + L Sbjct: 119 GIVNAILRRATRETESFKNSLQQAHGLPSWMYKRLKKDWP-AQLNELCQQLKYSAPLTLR 177 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + KL A + + E I LPGF +G + VQD A + Sbjct: 178 INQRHIGRDAYLIKLEAQDIQARACHISEAGIVIEQSVQITQLPGFEQGWFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L L + +LD CAAPGGKTA + A + ALD RL ++ NL RL L Sbjct: 238 CATLLPDLTDRVILDACAAPGGKTAHLLEKFTPAHLIALDQDASRLVRVSENLKRLKLDQ 297 Query: 291 ED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I+ DA + + D +++DAPCS+TG +RRHPD+ R + DIV++ Q+++L Sbjct: 298 HHLEILAADATTWQSSQALDCIVLDAPCSATGVMRRHPDIRLLRQSTDIVQTVDLQKQIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +K GG +++ CS+ K ++E+ + + P E+ I+ + Sbjct: 358 QHLWTQLKVGGTLLYITCSILKIENEQQMIEFFAEHPDAKEIK---------IEADWGIE 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P VS DGF+ + ++ Sbjct: 409 QIHGRQLLP--------VSGQGDGFYYCRIEKVA 434 >gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 848 str. F0332] gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 848 str. F0332] Length = 534 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 104/467 (22%), Positives = 181/467 (38%), Gaps = 46/467 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L V +L +E + L D + TLR R DA Sbjct: 68 AARLVAFEVLRAVDEDDAYANLVLPVEIARAGLNKL---DAAYATNLCYGTLRMRGRWDA 124 Query: 66 VLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + + LLR+ Q+L ++ +A + V A+ + V Sbjct: 125 IISRCAKGRRIYDIDPPVLDLLRMGCEQLLAMETPPHAAIHETVVIARNFFG-QGTGGFV 183 Query: 125 NSILRRVSREKIELLQ-----------RIAGISIIPEWFKERLENF-----YGKERVLAI 168 N++LRR+S + + + ++ P W E LE ++ V ++ Sbjct: 184 NAVLRRISEKAGQWPEIVRSSTASRTEFLSLWHSHPRWIVEALEESLEASGRSRDDVESV 243 Query: 169 SDACISPLYIDLTVK-FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGV 222 A +P + L + E A ++ A + L L +G+ Sbjct: 244 LAAHNAPAKVALVARAISPEALAERVEAAKMEAFPGYLMPNAVLLGRGDPHRLHPVRDGL 303 Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTA----QLIVSGAKVTALDVSKR 274 VQD + + LF + LD+CA PGGKTA GA++ A + + Sbjct: 304 AGVQDEGSQLIAALFAAAPIEGKDELWLDMCAGPGGKTATLAAIAQGRGARIHANEPQEH 363 Query: 275 RLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 RL+ + +++ A + + +D VLVDAPCS G +RR P+ W +D Sbjct: 364 RLDLVAASVEPWEDTVALRLGDGRELGTQEPDAYDRVLVDAPCSGLGALRRRPEARWRKD 423 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 DI A QR+LL ++PGG +V+S CS ++ +VV+ L + L Sbjct: 424 PKDIPGLAKLQRQLLASAFKALRPGGALVYSTCSPALAETRDVVRDFLAAHGRAKLLDAG 483 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A + + + +G +++ + DG F + + Sbjct: 484 EVAN--RVAIRDVSARDGMVQLW--------ADADCTDGMFIALITK 520 >gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 444 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 42/463 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK N R ++ L ++ + +S D+ L IV ++ Sbjct: 1 MKYQTNNPRELAVRTLLR-TSGGSYSNLQINAVIEST---SMSDVDKALFTNIVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN- 117 ++ L L + + +++LL ++ Q+ YLD V A+ D +++ AK + Sbjct: 57 RMTLEYQLVPFL-RDPEKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDG 115 Query: 118 -----RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++ R + + +++I+ +PEW +E GK++ + + Sbjct: 116 TRRFVTGILHQMDRKGVREPDKIEDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSL 175 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224 + +L T + +V F G+ Sbjct: 176 NQAPKQSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLT 235 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282 +QD SA +PV+ + +LD C+APGGKT Q+ + +V ALD+ + +L+ + N Sbjct: 236 IQDESAMLPVESMSIQPDDLILDACSAPGGKTTQIAADLKNGRVIALDIHQNKLKNVIRN 295 Query: 283 LDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL + + + ++FD +LVDAPCS G +RR P++ + + DI Sbjct: 296 AKRLGVDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADIN 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q ++L VK GG + +S C++ +Q+++EV+++ L + P Sbjct: 356 HLSQIQLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDF-------QIEP 408 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + G I I PD G DGFF +L R Sbjct: 409 TKTDLNLTTDENGMINIYPDDF--------GSDGFFVCSLVRK 443 >gi|104779336|ref|YP_605834.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) [Pseudomonas entomophila L48] gi|95108323|emb|CAK13017.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) [Pseudomonas entomophila L48] Length = 436 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 120/443 (27%), Positives = 192/443 (43%), Gaps = 42/443 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + + +RD+ L + + T R+ PR+D + +L Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +Q LL V + Q+ Y + +A + V A + K+ L+N++LRR RE E Sbjct: 69 ADADVQALLLVGLYQLFYTRIPAHAALGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127 Query: 138 ----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 + + + P W ++ L+ F+ E+ AI A + + L V + + Sbjct: 128 LLASMERDPVVRTAHPRWLQKSLKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYL 186 Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + + LPGFA+G VQD +A + L Sbjct: 187 SLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLELAPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299 VLD C APGGKT L+ + + A+D+ +RL ++R NLDRL L A D Sbjct: 247 VLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIACDARDTA 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K F +L+DAPCS+TG IRRHPD+ TR +DI A Q +LL ++ GG Sbjct: 307 SWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWPTLEVGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++++ CS ++ EV+ L +P EL A + L+ EG Sbjct: 367 MLLYATCSSLPTENTEVIDAFLARTPGARELDLATEAGLRQPHGRQLLAQEG-------- 418 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 ---------GHDGFYYAKLIKIA 432 >gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8] gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8] Length = 431 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 115/454 (25%), Positives = 202/454 (44%), Gaps = 41/454 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N RL++ LL +++ + E DS L RD+ + +V +R + Sbjct: 2 RTNVRLLAYRLLRKYEKEK-----FISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELL 56 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++ +L +++ LR+ Q+L+++ V DYA V V+ K N +F K Sbjct: 57 DWYINQLLKK--KDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK----NENFKK 110 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN++LRR+ + + PEW +F +E VL I PL + L V Sbjct: 111 LVNAVLRRLRTVPEPKELHL--VYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVMLRV 168 Query: 183 K---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 E L + +++L + +G+ VQ S+ + Sbjct: 169 NSLAATKEEVIKILAEEGTEAVPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQL 228 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 L VLD CAAPGGKT +L+ K+ A+D+S+ +++ + + RL L Sbjct: 229 VPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288 Query: 290 AEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + DA + FD VLVDAPC+S GT R HP+VL + +D K + Q ++ Sbjct: 289 SIETKIADAERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRM 348 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + Q ++ GGI+++S C++ K+++ EVV++ + VE++ + K ++ Sbjct: 349 VQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DVEVIDIRDKM-KEFEVEGIW 406 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ + PD F+ LR++ Sbjct: 407 DGYGFL-MLPDETITP---------FYISVLRKM 430 >gi|325983531|ref|YP_004295933.1| sun protein [Nitrosomonas sp. AL212] gi|325533050|gb|ADZ27771.1| sun protein [Nitrosomonas sp. AL212] Length = 425 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 120/447 (26%), Positives = 203/447 (45%), Gaps = 43/447 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L ++ ++ V+ SLT +L + A LS++ + V+ + LRF ++ AVLD Sbjct: 6 LAAASVVGRVLA-GASLTEVLQDVWR--AESSLSKQQRGAVQDLSYGVLRFYGQLGAVLD 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L L SL LL VS+ Q+ Y V + VVD AV ++ + +VN++L Sbjct: 63 ILLKKPLR--DKSLCHLLLVSLYQLQYSRVLPHTVVDQAVSASRCLVKGSGMQGVVNAVL 120 Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 R R++ +LL++ A P+W+ ++L Y E AI A + L V Sbjct: 121 RNFIRQQEKLLKQAAEKEIGRYSHPQWWVDKLRRQYP-ENFAAILSANNKRPPMTLRVNR 179 Query: 185 DIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQDASASIPVQLF 237 + + + L P S+ SLPGFA G+ VQDA A + L Sbjct: 180 RKISVEAYCDLLAENGMQAELLWPGALRLSQPVSVESLPGFAMGLVTVQDAGAQLAAPLL 239 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + + VLD CAAPGGK+ L+ ++ D +RL +++ N +RL + +E +I Sbjct: 240 DVHDGMRVLDACAAPGGKSTHLLELANISLSVLDNDPQRLIQVQQNFERLRMASERLICG 299 Query: 297 D---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + K+ +D +L D PCS++G + RHPD+ W R D+ K A Q+ +L Sbjct: 300 DAANPDAWWDKQPYDRILADVPCSASGVVCRHPDIKWLRRESDLTKFAITQQAILDALWK 359 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ G +++ CS+ +++ ++K L+ +L +A Sbjct: 360 ILRKNGKLLYVTCSVFAEENTMQIEKFLKHHSDACQLPLSVAAMIDG------------- 406 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ PD DGFF L++ Sbjct: 407 QLLPDTQ---------HDGFFYTLLQK 424 >gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)] gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24] gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces coelicolor A3(2)] gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24] Length = 475 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 102/466 (21%), Positives = 164/466 (35%), Gaps = 45/466 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLP 61 R+++ L V + +L + + RD L +V TLR Sbjct: 22 PVRMLAFEALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRRQG 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DA++ + L + +L + V Q+L + +A V +VE A+ + A Sbjct: 82 TYDAIIADCVDRPLREVDPPVLDVLSLGVHQLLGTRIPSHAAVSASVELARVVLGD-GRA 140 Query: 122 KLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--L 166 K VN++LR+V+R+ ++ +A + P W L + G R Sbjct: 141 KFVNAVLRKVARDDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIE 200 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGV 222 + A + L + T L G + ++ E Sbjct: 201 ELLAADNERPEVTLVARPGRATREELLGEEAAVPGRWSPYAVRLSEGGEPGAVDAVRENR 260 Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274 VQD + + LD CA PGGK A L GA + A + Sbjct: 261 AGVQDEGSQLVALALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAFLLASEKQPH 320 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + LD + I FD VLVD PC+ G +RR P+ W R Sbjct: 321 RAGLVARALDGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRP 380 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 +D+ A QR LL + V+ GG+V ++ CS ++ VV VL+ P EL+ Sbjct: 381 EDLDGFAPLQRGLLRNALEAVRVGGVVAYATCSPHLAETRAVVTDVLKQHPGT-ELLDAR 439 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ P + G D + LRR Sbjct: 440 PLLPGVPGLGEGPD----VQLWPHV--------HGTDAMYLALLRR 473 >gi|310778567|ref|YP_003966900.1| sun protein [Ilyobacter polytropus DSM 2926] gi|309747890|gb|ADO82552.1| sun protein [Ilyobacter polytropus DSM 2926] Length = 434 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 104/454 (22%), Positives = 198/454 (43%), Gaps = 37/454 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + LL LL+ + ++ LS+ ++ + + +R + +D Sbjct: 1 MNVKKRIIKLLGEFED-GKYSNILLNEYFREN---NLSRGEKAFITEVFYGVIRNIIFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +D + R L+ LLR+S Q ++ D V A E AK+ + + Sbjct: 57 YQIDKRATKKVHR--RWLRNLLRISYYQAYFMRSDDAGVAWEATELAKQKLG-VYVGRFA 113 Query: 125 NSILRRVSREKIEL------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N I+R RE + ++ + P+WF E++E YG E + + Y+ Sbjct: 114 NGIVRSFMREMDQEAENLKSQGKMDILYSCPKWFYEKIEKEYG-EETEKLLKSYKKIPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E K+ ++ +++ F EG VQD S+ + Sbjct: 173 SVRVNKLKYNEDEFEALLEKMGINIMKQIDSVYYLDSGALIDSKEFKEGKITVQDGSSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 ++ G VLD C+APG K A+L+ + ++TALD+ + +++ L N L Sbjct: 233 AAKMLGARPGDIVLDTCSAPGSKAVVLAELMENKGEITALDIHQHKIKLLDANAKNLGAK 292 Query: 290 AEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +++DA K FD +LVDAPCS G +R+ P+ L+ +D ++ + A Q ++L Sbjct: 293 IITGVKLDARKVKEQGKKFDKILVDAPCSGYGVLRKKPEALYNKDMTNVEELAKLQYEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K G +V+S C++ +++ + VQ+ L+++P ++ +++ Sbjct: 353 ESASKSLKEDGELVYSTCTIFNEENTDNVQRFLQNNP-----------EFEVVELEFPDG 401 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 EG I ++ ID +D F+ + R+ I Sbjct: 402 VEGHKDILGGLV--IDYKEEFLDSFYIIKFRKRI 433 >gi|167031103|ref|YP_001666334.1| sun protein [Pseudomonas putida GB-1] gi|166857591|gb|ABY95998.1| sun protein [Pseudomonas putida GB-1] Length = 436 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 119/442 (26%), Positives = 193/442 (43%), Gaps = 40/442 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + + +RD+ L + + T R+ PR+D + +L Sbjct: 14 VLSGKASLNSSLPAQL-----DKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +Q LL V + Q+ Y + +A + V A + K+ L+N++LRR RE E Sbjct: 69 ADADVQALLLVGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEE 127 Query: 138 ----LLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDLTV-KFDIETWAH 191 + + + P W ++ L+ F+ + + ++ P+ + + + + Sbjct: 128 LLASMERDPVVRTAHPRWLQKALKAFWPAQWEAICAANNAHPPMILRVNRRHHSRDAYLA 187 Query: 192 KLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L + + + + LPGFAEG VQD +A + L V Sbjct: 188 LLAEAGIGASACQYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAPGQRV 247 Query: 246 LDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFD 300 LD C APGGKT L+ + A V A+D+ +RL ++R NLDRL L A D Sbjct: 248 LDACCAPGGKTCHLLEAEAGLAHVVAIDLEAKRLIRVRENLDRLKLDAELIACDARDTAS 307 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG+ Sbjct: 308 WWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIPALAALQGELLDALWPTLEVGGM 367 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 ++++ CS ++ EV+ L +P EL A + L+ EG Sbjct: 368 LLYATCSSLPTENTEVIDAFLARTPGARELDLATEAGLRQPHGRQLLAQEG--------- 418 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 --------GHDGFYYAKLIKIA 432 >gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 546 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 120/479 (25%), Positives = 190/479 (39%), Gaps = 62/479 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------LSQRDQILVRAIV 53 R V++ L + + + LL+ + DS L RD LV IV Sbjct: 81 RAVAAVRLLRADKGKAFVD-LLNEKANDSGENEMGYVERTLGFSTRHLDDRDIRLVTVIV 139 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 T+R+ ID ++ + + L Q+LR+ +IL L+V YAVVD V A Sbjct: 140 AGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKLNVPAYAVVDENVRLA 199 Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157 K +VN+ILR+ + + + ++ I P W R Sbjct: 200 KVALRP-GAGNMVNAILRKLLLLKETDSLPLPKIEGDDRAQARALSIIYSHPVWMVRRWI 258 Query: 158 NFYGKERVLAISDACISPLYIDLTVKFD----------IETWAHKLNAVMLPTGGIRLKE 207 F GKE L + + S Y L V + +R++E Sbjct: 259 RFLGKEEALKLMNWNNSDPYFSLRVNTTNGYTRDDLVTRLEDLQVHYEKSIMDEFVRIRE 318 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GA 264 ++++ EG+ VQD SA V + +++D CAAPGGKT + Sbjct: 319 GMQAVLQAGLLKEGMCAVQDESAGFVVSVVDPQPGETIMDCCAAPGGKTLFMASRLAGQG 378 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPK--KLFDAVLVDAPCSSTGT 321 KV+ALD++K RL L +L D Y + +D VL+DAPCS G Sbjct: 379 KVSALDINKGRLRILMEAAKCHNLDDIITDIHGDLRLYAKESTTKYDKVLLDAPCSGLGV 438 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + D+ W R +D+ + C Q +LL VKPGG++++S CS+D +++E V + Sbjct: 439 LSKRADLRWNRQLEDLEELVCLQDELLDSASLLVKPGGVLIYSTCSIDHEENENRVTDFV 498 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P A ++ +G+ +DG FA L R Sbjct: 499 QRHPEF------TLQGVHGYVPAEFITGDGFY--------SSSPTKHSLDGAFAARLVR 543 >gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215] gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215] Length = 438 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 177/414 (42%), Gaps = 33/414 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G R + +L V L+ + F L D + + +R+ Sbjct: 1 MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNSL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D D + ++ L+ LL + + Q+L +D + A + VE AK+ N Sbjct: 57 KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLN-G 115 Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR SR+ + + I+ + P W + L + G I Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDKKERISYLESFPLWLVKDLYKWVGNSEGENIIK 175 Query: 171 ACISPLYIDLTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAE 220 A IDL + L + GI LK P SI +LPG+++ Sbjct: 176 AFNKKPSIDLRINQLKTNLDKFLIVLYENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277 G+W +QD S+ L +LD CAAPG K+ L + A+D S++RL+ Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSEKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL RL+L + + ++ DA + FD +L+DAPCS GT+ R+PD W+ Sbjct: 296 ILQSNLVRLNLKSVNTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + I Q KLL + +K GI+V+S C++ ++ +++K + + Sbjct: 356 SKEKIKSLTLLQEKLLEKIFPLLKKDGIMVYSTCTICPDENNLLIEKFIEKNKG 409 >gi|254429168|ref|ZP_05042875.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp. DG881] gi|196195337|gb|EDX90296.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp. DG881] Length = 427 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 113/445 (25%), Positives = 189/445 (42%), Gaps = 42/445 (9%) Query: 12 SHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L+ V+ SL +L L D +R I R L ++ L+ Sbjct: 1 MRALNRVLPGKGDGESLREVLRDF-------PLQGSDGGQMRDICFGVCRHLRPLNHWLN 53 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L L ++ L + ++ + D +A+V+ + ++ + A L N++L Sbjct: 54 QQLSKPLKASAQPVRLALLAGLYELWFSDRPAHAIVNAYPQLCRK-LKAPWAAGLSNAVL 112 Query: 129 RRVSREKIELLQRIAGISI---IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 R+ S+ +E A +I +P+W +R + + + A++ A + L V Sbjct: 113 RKASQITLEEAVADAPANIQLSLPDWLFKRWQKDWPDD-ADAMARANLQTPPFTLRVNRQ 171 Query: 186 IETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + A L A + + LPGF +G VQD +A +P +L Sbjct: 172 QQQRADALTALGEGARAGSVAPYSIYLQPARPVFQLPGFEQGALSVQDEAAQLPAELLQA 231 Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--E 295 N +LD CAAPGGKT Q A +TAL++ +RL ++R NL RL + Sbjct: 232 PANGRILDACAAPGGKTGQLREKFPAADLTALELEGKRLARIRENLARLGTDVTLLQGDA 291 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D + FDA+L+DAPCS+TG +RR PDV W R DI Q ++L + Sbjct: 292 SDPHSWWDGTPFDAILLDAPCSATGILRRQPDVKWHRKASDIAALVDLQARMLDALWPLL 351 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 PGG++V++ CS+ + +++ V+ L+ P ++ P + GW ++ Sbjct: 352 NPGGMLVYATCSVLRDENDHQVRDFLQRQPQARDVTP--------RPEGATMVDAGW-QL 402 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P G DGF+ LR+ Sbjct: 403 FP--------EQHGPDGFYLACLRK 419 >gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycobacterium kansasii ATCC 12478] Length = 464 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 101/461 (21%), Positives = 161/461 (34%), Gaps = 42/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + L + R ++ RD + T R +DA Sbjct: 22 PARAAAFDALCAVTSRDAYANLALPALLRE---RGITGRDAAFATELTYGTCRTRGLLDA 78 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L LLR+ Q+L V +A V V+QA + + A VN Sbjct: 79 VIGAAAGRAPEAIDPVLLDLLRLGTYQLLRTRVGSHAAVSTTVDQAG-IEFDSARAGFVN 137 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170 +LR ++ A + P W + + + A+ Sbjct: 138 GVLRTIAGRDERSWVDELAPDPRSDPIGHAAFVHAHPRWIAQAFADALGTAAAELEAVLA 197 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + ++ L + A + + + L +G VQD Sbjct: 198 SDDERPHVHLAARPGVLTAAELAAAVGGTVGRYSPYAVYLPGGDPARLAPVRDGQALVQD 257 Query: 228 ASASIPVQL----FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA--LDVSKRRLEKLRC 281 + + + + LDLCA PGGKTA L G + A V Sbjct: 258 EGSQLVARALTLAPVDDDRGRWLDLCAGPGGKTALLAGLGGQSGARVTAVEPSPQRAGMV 317 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + L +++ D FD VLVD PC+ G +RR P+ W R D+ A Sbjct: 318 RANTAGLP-VAVVQADGRHSGLDPGFDRVLVDVPCTGLGALRRRPEARWRRQPADVPALA 376 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL I+ V+PGG+V+++ CS ++ V+ LR P V Sbjct: 377 KLQRELLAAAIALVRPGGVVLYATCSPHLAETVGVLADALRRHP-----VAALDTRPLFE 431 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L ++++ P G D FA AL+RL Sbjct: 432 PVTEGLGDGPYVQLWPH--------RHGTDAMFAGALQRLA 464 >gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris] gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris] Length = 427 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 112/458 (24%), Positives = 201/458 (43%), Gaps = 52/458 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R + +L+ +M R +L+ L+ + +S + + I R Sbjct: 1 MK--VNDRFNALKILTALMESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R+ ++ D ++ + +L + + Q+ Y++ DYAVV V + K++ Sbjct: 48 FRLQSIADTLINKRPK--DNEVWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104 Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176 LVN++LR R + +L+++A + P W +RL+ + + I++A Sbjct: 105 KGLVNAVLRNFCRRQDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNDW-QFIAEANDRHP 163 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 + L V ++ + L + + +P +++LPGFA+G VQD Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLD 284 A+ + L VLD C APGGKT ++ + ALD+ +RL+++R NL+ Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283 Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L A + ++ + FD +L+DAPCS+TG IRRH D+ R ++I + Sbjct: 284 RLDLQATVVEGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQ 343 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L + PGG++V++ CS+ ++E + + + P Sbjct: 344 VQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQISRFVAEHPD---------CQVSDGK 394 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P GMDGFF LR+ Sbjct: 395 WSWGRWTGHGQQILPG--------EHGMDGFFYSVLRK 424 >gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301] gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301] Length = 438 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 105/413 (25%), Positives = 180/413 (43%), Gaps = 33/413 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G R + +L V L+ + F L D + + +R+ Sbjct: 1 MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNPL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D D + ++ L+ LL + + Q+L +D + A + VE AK+ N Sbjct: 57 KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLN-G 115 Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR SR+ + + I+ + P W + L + G I Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDRKERISYLESFPLWLVKDLYKWVGNSEGENIIK 175 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAE 220 A IDL + +++ + L+ + GI LK P SI +LPG+++ Sbjct: 176 ALNKKPSIDLRINKLKTNLDNFLKVLHENKIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277 G+W +QD S+ L +LD CAAPG K+ L + A+D S +RL+ Sbjct: 236 GLWTIQDRSSQWIAPLLNPKQGEKILDACAAPGSKSTHLAELTNDSSEIIAVDRSAKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL+RL+L + + ++ DA + FD +L+DAPCS GT+ R+PD W+ Sbjct: 296 ILQSNLERLNLKSVNTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 + I Q KLL +K G +V+S C++ ++ ++++ + + Sbjct: 356 SKEKIKSLTLLQEKLLDSIFPLLKKDGTLVYSTCTICPDENNLLIERFIEKNK 408 >gi|256845813|ref|ZP_05551271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_36A2] gi|256719372|gb|EEU32927.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 3_1_36A2] Length = 435 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 200/452 (44%), Gaps = 37/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V K L+ + ++ +++ + I +R +D Sbjct: 1 MNIKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D + +V A E AK+ +K + Sbjct: 57 YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDNKGIVWEATELAKKKYG-VPISKFI 112 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + + IP+WF + LE YG + + Y+ Sbjct: 113 NGTLRNYLRNKDLELKRLDDEKNYEVLYSIPKWFYDTLEKQYGNNNLKQAITSLKKIPYL 172 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I++ F G QDAS+ + Sbjct: 173 SVRVNKLKYSEEEFEEFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYL 232 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + GT+ N VLD+CAAPGGKTA + + + ++ A+D+ + +++ + N+ +L + Sbjct: 233 AAKNLGTMPNELVLDICAAPGGKTAVLAENMENIGEIIAIDIHQHKIKLIDTNMKKLGID 292 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I MD + FD +LVD PCS G IR+ P++L++++ + + + A Q ++L Sbjct: 293 IVKAIIMDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRESVEELAKLQLEIL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++S C++ +++ ++K L + Y + + Sbjct: 353 NSAADILKDGGELIYSTCTIIDEENTNNIKKFLEERKEF----KVEKLYIPENVLGDYDN 408 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G+ I+ MD F+ + L++ Sbjct: 409 LGGF---------CINYKEEIMDNFYIIKLKK 431 >gi|325283419|ref|YP_004255960.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP] gi|324315228|gb|ADY26343.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP] Length = 418 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 107/440 (24%), Positives = 173/440 (39%), Gaps = 29/440 (6%) Query: 2 KSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 KS +N R ++ +L V+ LD L RD L IV TLR Sbjct: 6 KSTLNPGRALAVRVLHRVLSGDSYAAPALDASLAS---AGLPARDAGLATHIVYGTLRRA 62 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P + L+ +L + LL + LYL ++AVV+ V A+ + Sbjct: 63 PALRLALNPLLRG---KTAPKAWALLLAGAFEKLYLGTPEHAVVNEYVSLARESRFAP-- 117 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRRV + + +P W E L YG++ + Sbjct: 118 PGLVNAVLRRVQAPQEDTP---EARYALPAWLAEELGRVYGEQAADVMESLLEPQPLWLH 174 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + + + + + GI L + + +G + +++ V G + Sbjct: 175 LGQQGPDLLESEGSLIERTVAGIDAVTLDRPLRQTAAYRQGQAQPVNPASAAVVTALGEV 234 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V DL G K A L ++GA VT++++ + R NL RLH A I D Sbjct: 235 RGQKVYDLAGGAGIKAALLALAGADVTSVELQPHKHAAARSNLKRLHARARLI-THDLTR 293 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 VL+DAPC+ +GT+R HP++ + + A Q +LL + V+ GG+ Sbjct: 294 PLDAAPASLVLLDAPCTGSGTLRAHPEIKARLTPQAVGEMAELQAQLLDNAAALVEAGGL 353 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S CS+ Q+ + VQ L S P D + P+ + P + Sbjct: 354 LVYSVCSVFPQEGPQRVQAFLASHP----------------DFSAEPLPDLGVPTLPAEV 397 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G+DGF+ LRR Sbjct: 398 GVFTVPLDGLDGFYMARLRR 417 >gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodococcus erythropolis PR4] gi|226185621|dbj|BAH33725.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4] Length = 482 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 104/456 (22%), Positives = 168/456 (36%), Gaps = 39/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 RL + +L V + +L D R L RD L + R +DA Sbjct: 42 QPRLAARDVLRAVRERDAYANLVLPGLLRD---RKLDARDAALATELAYGAARAQGLLDA 98 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + +L +LR+ Q+L VA +A V +V+ + + + A VN Sbjct: 99 VIAHAAGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVATSVDLVRAENG-QGRAGFVN 157 Query: 126 SILRRVSREKIELLQ----------RIAGISIIPEWFKERLENFYGKE--RVLAISDACI 173 ++LRRVS + R+A P W + + G + + A Sbjct: 158 AVLRRVSERTQDEWVELLAPKDPVGRLAFEHAHPLWIAQVFADSLGAAAGELEDVLIADD 217 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + L + E A + P + L +G+ VQD + Sbjct: 218 ARPAVHLVARPGEISAEELALVTGGEIGPYSPYAVHLDGGDPGQLEAVRQGLAGVQDEGS 277 Query: 231 SIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284 + + + LDLCA PGGK A L +G + LD + + Sbjct: 278 QLVARALSIAPLEGEDSGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRAELIRK 337 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 D+ D + + +D +LVDAPC+ G +RR P+ W R D+ Q Sbjct: 338 TTRELPVDVHVADGRESGLEPGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAPLVKLQ 397 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL I V+PGG+V++S CS ++ VV +R V + D+ Sbjct: 398 RELLAAAIELVRPGGVVLYSTCSPHLSETLAVVADAVRRHG--VVELDTKELVPGVPDVG 455 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +++ P G D F ALR+ Sbjct: 456 DGSS----VQLWPH--------RHGTDAMFMAALRK 479 >gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythropolis SK121] gi|229319528|gb|EEN85364.1| Fmu protein [Rhodococcus erythropolis SK121] Length = 482 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 105/456 (23%), Positives = 168/456 (36%), Gaps = 39/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 RL + +L V + +L D R L RD L + R +DA Sbjct: 42 QPRLAARDVLRAVRERDAYANLVLPGLLRD---RKLDARDAALATELAYGAARAQGLLDA 98 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + +L +LR+ Q+L VA +A V +V+ + + + A VN Sbjct: 99 VIAHAAGRPIEEIDGTLLDVLRLGSYQLLRTRVAPHAAVATSVDLVRAENG-QGRAGFVN 157 Query: 126 SILRRVSREKIELLQ----------RIAGISIIPEWFKERLENFYGKE--RVLAISDACI 173 ++LRRVS E R+A P W + + G + + A Sbjct: 158 AVLRRVSERTQEEWVELLAPKDPVGRLAFEHAHPLWIAQVFADSLGAAAGELEDVLIADD 217 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + L + E A + P + L +G+ VQD + Sbjct: 218 ARPAVHLVARPGEISAEELALVTGGEIGPYSPYAVHLDGGDPGQLEAVRQGLAGVQDEGS 277 Query: 231 SIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284 + + + LDLCA PGGK A L +G + LD + + Sbjct: 278 QLVARALSIAPLEGEDSGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRAELIRK 337 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 D+ D + + +D +LVDAPC+ G +RR P+ W R D+ Q Sbjct: 338 TTRELPVDVHVADGRESGLEPGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAPLVKLQ 397 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL I V+PGG+V++S CS ++ VV +R V + D+ Sbjct: 398 RELLAAAIELVRPGGVVLYSTCSPHLSETLAVVADAVRRHG--VVELDTKELVPGVPDVG 455 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +++ P G D F ALR+ Sbjct: 456 DGSS----VQLWPH--------RHGTDAMFMAALRK 479 >gi|262376795|ref|ZP_06070022.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter lwoffii SH145] gi|262308140|gb|EEY89276.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter lwoffii SH145] Length = 435 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 116/455 (25%), Positives = 194/455 (42%), Gaps = 41/455 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +N R L V + SL +L+ ++S+RD+ L + LR Sbjct: 8 AKNLNLRAQVVKTLLAV-QNGQSLASVLNQHI-----NIVSERDRGLYHELTLGCLRQWH 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A+ +L L +L+ L + + QIL + +A + V AK+ + Sbjct: 62 GLKAITLPLLTKPLD--NQALESCLYLGLYQILCTRIPAHAAISETVTAAKQ-LGFEPLS 118 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRRVSRE E + +P W +RL+ + E++ +S + L Sbjct: 119 GLVNAVLRRVSRETEEFDLALNQAHGLPSWLYKRLKKDWP-EQLAELSHDLKQIAPLTLR 177 Query: 182 VKFD---IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 V + + + L L E I +LPG+ G + VQD A + Sbjct: 178 VNINQVSRDEYLEILEEEGYEARACTLSEVGIVLEQNVHIPNLPGYEAGGFSVQDEHAQL 237 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY- 289 L L V+D CAAPGGKTA S K+ A+D +RL ++ NL+RL L Sbjct: 238 CATLVPDLEGKIVVDACAAPGGKTAHILEKYSPKKLYAIDQDAKRLVRVAENLERLLLTE 297 Query: 290 --AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +II DA + + D +++DAPCS+ G IRRHPD+ R + DI ++ Q+++ Sbjct: 298 YADVEIIAADAITWTAPEPVDCIVLDAPCSAIGVIRRHPDIRLLRHSTDIPQTVQLQKQI 357 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K GG +++ CS+ K ++E+ + + E+ I+ + Sbjct: 358 LENMWQQLKVGGTLLYITCSILKAENEQQMVEFFAQHADAKEIK---------IEADWGI 408 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P + DGFF + + Sbjct: 409 EQIHGRQLLP--------KADQGDGFFYCRIEKTA 435 >gi|157149881|ref|YP_001449914.1| sun protein [Streptococcus gordonii str. Challis substr. CH1] gi|157074675|gb|ABV09358.1| sun protein [Streptococcus gordonii str. Challis substr. CH1] Length = 437 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 186/457 (40%), Gaps = 37/457 (8%) Query: 1 MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M++ AR V+ +L V + L+ LSQ+D+ LV +V T+ Sbjct: 1 METRRKSARQVALEVLEEVFDQGAFSNIALNKALKKVQ---LSQQDKSLVTELVYGTVAR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + LL + + ++A++ AVE AK+ K Sbjct: 58 KLTLEWYLSHLIEDRDKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAVELAKKRKLGSD 117 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN+ILRR+ RE +R + P W + L YG+ER AI + Sbjct: 118 --KFVNAILRRIEREGVADVETIKRKNKRYSIQYSTPVWLVKALIEEYGEERAQAILASL 175 Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 I +T E L A L + F G+ +QD S+ Sbjct: 176 FERNKASIRVTDLARKEELKGLLQAEDSLLAPSALVKNQGHFAGHELFTSGLITIQDESS 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCNLDRLHL 288 + + +LD C+APGGKT + K+ ALD+ +L+ + RL L Sbjct: 236 QLVAPTLSIEGDERILDACSAPGGKTLHMASYLSTGKIIALDLYDHKLQLIEEAATRLGL 295 Query: 289 -YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D + K +FD +LVDAPCS G +RR PD+ + ++ D + Q Sbjct: 296 ADKVQTKKLDAREVYQKFGKDVFDKILVDAPCSGIGLLRRKPDIKYNKENADFLSLQKIQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ Q++ +VV K L P N Sbjct: 356 LEILDSVCKSLRKGGIITYSTCTIFSQENSQVVSKFLERHP--------NFEQVNLKHER 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF RR+ Sbjct: 408 KDILKDGCILITPELY--------GSDGFFISQFRRI 436 >gi|326571735|gb|EGE21748.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis BC8] gi|326574350|gb|EGE24293.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis CO72] Length = 448 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 103/471 (21%), Positives = 200/471 (42%), Gaps = 51/471 (10%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 MK+ + +R ++ ++ SL+ LLD + + V + Sbjct: 1 MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLESTEMSS-----RGFVHEL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + TLR + + + ++ + + +Q + + + Q++Y+++ +YA ++ VE A Sbjct: 55 LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161 + + LVN+ILR+ + K + +++ +P W ++L+ + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGSTLR 171 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + + D H L ++ + I LP F EG Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274 VQDA A + L ++ SVLD+C APGGKT + +TA+D ++ Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRI 291 Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+++ N+ RL L ++ D + + FD +L+DAPC++TG +RRHPD+ R Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + QR +L S +K GG++++ CS+ K ++E + LR++ Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + + + + + P + G DGF+ L + + Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448 >gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10] gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10] Length = 431 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 112/458 (24%), Positives = 201/458 (43%), Gaps = 45/458 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N RL++ LL +++ + E DS L +D+ + +V +R Sbjct: 1 MKT--NVRLLAYRLLRKYEKEK-----FILREDVDSVLSFLDDKDRRFFKELVWGVVRKE 53 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D ++ +L +++ LR+ Q+L+++ V DYA V V+ K + Sbjct: 54 ELLDWYINQLLKK--KDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKS----EN 107 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 F KLVN++LRR+ + I PEW +F +E VL I PL + Sbjct: 108 FKKLVNAVLRRLRTVPEPKELHL--IYSHPEWIVNYWRSFLPEEAVLRIMKWNQEPLPVM 165 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDA 228 L V + T ++ ++ G + +G+ VQ Sbjct: 166 LRVN-SLATTKEEVIKILAEEGTEAVPGKHAPFSLVVRKLGISMNDSRVIKDGLASVQGE 224 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + L VLD CAAPGGKT +L+ K+ A+D+S+ + + + + R Sbjct: 225 SSQLVPFFMELKPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKTQLVEKHAKR 284 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L + + D + FD +LVDAPC+S GT R HP+VL + +D K + Sbjct: 285 LKLSSIETKIADVERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKFSEI 344 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +++ Q ++ GGI+++S C++ K+++ EVV++ + E++ + K ++ Sbjct: 345 QLRMVQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDIRDKM-KEFEV 402 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ + PD F+ LR++ Sbjct: 403 EGIWDGYGFL-MLPDETITP---------FYISVLRKM 430 >gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 473 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 158/459 (34%), Gaps = 43/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + L R +S RD L + R +DA Sbjct: 32 PARSAALETLRAVRDRDAYANLALPALLK---QRRISGRDAALATELTYGACRAQGLLDA 88 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L L LR+ Q+L + +A V V+ + + +R A N Sbjct: 89 VIGECSARPLDGIDPELLDALRLGAYQLLRTRIPAHAAVASTVDIVRAESGSRQ-AGFAN 147 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++LRR+S + +A P W + + G + Sbjct: 148 AVLRRISERDEQEWIDRLAPARDDDPVGHLALRYAHPRWIAQSFADALGSVGAELEAALA 207 Query: 173 ISPLYIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + + + G+ L L EG V Sbjct: 208 ADDARPAVHLTARPGEISAEELAAITGGDEAPYSPYGVHLDSGAGDPGDLEPVREGFASV 267 Query: 226 QDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLR 280 QD + ++ +L LDLCA PGGK L LD ++ + Sbjct: 268 QDEGSQLVAVALSRVEVQGPDLRWLDLCAGPGGKANLLGSLVTMDGGTLDAVEQAPHRAD 327 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + ++ D D + +D VLVDAPC+ G +RR P+ W R DD+ + Sbjct: 328 LVRRSTDGLSVEVHVADGRDPGLEPGYDRVLVDAPCTGLGALRRRPEARWRRRPDDVAEL 387 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QR+LLL + + GG+V + CS ++E VV V+R VE + + Sbjct: 388 AKLQRELLLSAVRLTREGGVVAYVVCSPHLSETEGVVSDVVRR--AGVEQLDARPYFPGV 445 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 D+ + +++ P G D F LR Sbjct: 446 PDLGDGPA----VQLWPH--------RHGTDAMFCALLR 472 >gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces odontolyticus F0309] gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces odontolyticus F0309] Length = 490 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 96/475 (20%), Positives = 173/475 (36%), Gaps = 45/475 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V + +L + S RD +V+ TLR + R+D Sbjct: 19 PRRIAYDVLHEVETQGAFANIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAIGRLDW 78 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-------- 117 V+ + L +LR+ Q+L + V D+A V V+ A+ + Sbjct: 79 VISRHIDRPLADLDPRALVVLRMGTHQLLDMRVPDHAAVSATVDVAREHLTDGPVRFVNA 138 Query: 118 --RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170 R + S + Q + P W + Y +E +L + + Sbjct: 139 VLRSITREDPSEREAAMDAIADEDQALGVRYSHPAWMVTAFHDALKAHGYPEEELLDVLE 198 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAEG 221 A + L + + + + + LP +G Sbjct: 199 ADNEVPTVTLVARPSLMSVDELADEAEDILDTRVALGAVSPYAVLLESGDPARLPSIRDG 258 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVS 272 QD + + + + N+ LDLCA P GA+VTA +V Sbjct: 259 RAGAQDEGSQLAALIAASAPLEGDNDERWLDLCAGPGGKAALLAGLAAGVGARVTANEVH 318 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDY------CPKKLFDAVLVDAPCSSTGTIRRHP 326 R + + +++ D + P FD V+VDAPCS G++RR P Sbjct: 319 PHRARLVERTT--RQFDSIEVVSGDGRTFGGGQSAWPLGSFDRVVVDAPCSGMGSMRRRP 376 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + W R D+ + QR+LL + ++ +PGG++ + CS ++ E V+++L++ Sbjct: 377 ESRWNRTPADVEELTVLQRELLDRAVALTRPGGVLTYITCSPHAAETREQVERLLKA--G 434 Query: 387 PVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VEL+ + + A+ + G I+ ++ G D F LRR Sbjct: 435 EVELLDTVALANECAPQALDVPASAGVIKGFSGRTLQLWDHRFGTDLMFVACLRR 489 >gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707] gi|325556410|gb|EGD26076.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707] Length = 495 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 97/459 (21%), Positives = 159/459 (34%), Gaps = 42/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + +L V + +L + R L RD L + R +DA Sbjct: 51 QPRRAARDVLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDA 107 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L +L + Q+L +A +A V +V+ + + A VN Sbjct: 108 VIAECAGRPVEEIDGPLLDVLELGAYQLLRTRIAPHAAVATSVDLVRAEAGP-GKAGFVN 166 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISD 170 ++LRRVS + + +A P+W + + G + + Sbjct: 167 AVLRRVSEKTEDEWVARLAPDAVADPVGHLAFRYAHPKWIAQAFADSLGADAAELKDVLV 226 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 A + + L + E A + P + L EG+ VQD Sbjct: 227 ADDARPGVHLVARPGEISAEELALVTGGEVGPYSPYAVHLDGGDPGLLDAVREGLAGVQD 286 Query: 228 ASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRC 281 + + + LDLCA PGGK A L G LD + + Sbjct: 287 EGSQLVARALTLAPLEGPDTGRWLDLCAGPGGKAALLGALVGIDGGRLDAVEPAEHRADL 346 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 D+ D + +D +LVDAPC+ G +RR P+ W R D+ Sbjct: 347 VRKTTRDLPVDVHVADGREPGLDGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVSGLV 406 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL + V+PGG+V++S CS ++ VV +R + Sbjct: 407 KLQRELLASALQLVRPGGVVLYSTCSPHVSETVAVVADAVRRHG--AVALDTRELVPGVP 464 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ +++ P G D F ALRR Sbjct: 465 NLGDGP----GVQLWPH--------RHGTDAMFMAALRR 491 >gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobacterium bovis AF2122/97] gi|121637337|ref|YP_977560.1| putative fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426744|ref|ZP_03424663.1| putative fmu protein [Mycobacterium tuberculosis T92] gi|219557310|ref|ZP_03536386.1| putative fmu protein [Mycobacterium tuberculosis T17] gi|224989812|ref|YP_002644499.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260186346|ref|ZP_05763820.1| putative fmu protein [Mycobacterium tuberculosis CPHL_A] gi|260200462|ref|ZP_05767953.1| putative fmu protein [Mycobacterium tuberculosis T46] gi|260204672|ref|ZP_05772163.1| putative fmu protein [Mycobacterium tuberculosis K85] gi|289442852|ref|ZP_06432596.1| SUN protein [Mycobacterium tuberculosis T46] gi|289447003|ref|ZP_06436747.1| SUN protein [Mycobacterium tuberculosis CPHL_A] gi|289569424|ref|ZP_06449651.1| SUN protein [Mycobacterium tuberculosis T17] gi|289574076|ref|ZP_06454303.1| SUN protein [Mycobacterium tuberculosis K85] gi|289749965|ref|ZP_06509343.1| SUN protein [Mycobacterium tuberculosis T92] gi|31618190|emb|CAD94303.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492984|emb|CAL71455.1| Probable fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772925|dbj|BAH25731.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289415771|gb|EFD13011.1| SUN protein [Mycobacterium tuberculosis T46] gi|289419961|gb|EFD17162.1| SUN protein [Mycobacterium tuberculosis CPHL_A] gi|289538507|gb|EFD43085.1| SUN protein [Mycobacterium tuberculosis K85] gi|289543178|gb|EFD46826.1| SUN protein [Mycobacterium tuberculosis T17] gi|289690552|gb|EFD57981.1| SUN protein [Mycobacterium tuberculosis T92] Length = 457 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + +L A R + RD + T R +DA Sbjct: 15 PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 72 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +LR ++ A + P W + + G + A+ Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190 Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + + T + + + L +G VQD Sbjct: 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250 Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA L A+VTA++ S R + + Sbjct: 251 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N L +++ +D FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 311 AQNTR--GLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR+LL I+ +PGG+V+++ CS ++ V LR P+ Sbjct: 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHAL-----DTRPL 422 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L +++ P G D FA ALRRL Sbjct: 423 FEPVLAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 457 >gi|300173591|ref|YP_003772757.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc gasicomitatum LMG 18811] gi|299887970|emb|CBL91938.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc gasicomitatum LMG 18811] Length = 453 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 103/459 (22%), Positives = 201/459 (43%), Gaps = 44/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+++ L+ + + L+ LS+ D+ L+ +V ++ + Sbjct: 10 NPRVLAVQTLAKI-KNGAYSNLQLNQVIK---QHQLSEADKRLLTTLVYGVIQHRMTFEY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + +++LL ++ Q+ +LD + ++A+ + ++E AK + K V Sbjct: 66 WLAPFV--GDKKIDAWVRELLYSAIFQMKFLDKIPEHAIFNESIEVAK-ILGHVGTGKYV 122 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +IL + R+ E +QR++ +P W E L + G+E A+ + Sbjct: 123 TAILHNIGRQGLRNISEIKEPIQRLSIERSLPIWLIETLISQNGEEATRAMLETINDAPK 182 Query: 178 IDLTVKFDIET--------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + + A K V + S F +G+ +QD S Sbjct: 183 QSIRVNTTLASDEEVEQALAAEKFTTVKSRVAAHAYIVSGGHVASSKAFHDGLLTLQDES 242 Query: 230 ASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 A +PV+ N+ + D AAPGGKT Q+ +TALD+ + +++ ++ N +R Sbjct: 243 AMLPVESMRLTENVKTILDAAAAPGGKTTQIAQSVGENVTITALDIHEHKIKLIQSNAER 302 Query: 286 LHLY-AEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 LH+ +DA + + FD +LVDAPCS G +RR P++ + + D+ A Sbjct: 303 LHVTEKIRTRVLDARKVPTEIEQKFDRILVDAPCSGFGLLRRKPEIRYDKTLTDVENLAH 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L V G++V+S C++ +Q++++V+ K L ELVP ++ + Sbjct: 363 LQFEILDSVSQNVTDNGMIVYSTCTILRQENDDVITKFLLKH-SDFELVPTQTSKNLKPN 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + P+ + DGFF L++ Sbjct: 422 RSEDV-----LHVYPNDYQ--------TDGFFVATLQKK 447 >gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC3088] gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC3088] Length = 425 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 106/452 (23%), Positives = 192/452 (42%), Gaps = 40/452 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + ARL + +S V+ + L + + + T+ L Sbjct: 1 MNPSI-ARLSAVRAVSQVLTGHA--------IRVSDFDQGLDPQQKAFAHQLAQGTINAL 51 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR+ +L+ +L + K+ + +L + QI Y+ D+A V+ +V AK+ K+ Sbjct: 52 PRLSGLLNQLLSKPIKPKEAEVHAILLTGLYQIEYMRTPDHAAVNESVNLAKKLKKT-WA 110 Query: 121 AKLVNSILRRVSREKIELLQR--IAGISIIPEWFKERLENFYGKERVLAISDACISPL-Y 177 KL+N LRR RE+ L A + EW + + + + I + Sbjct: 111 IKLINGCLRRFLREQDTLRANLTTAAEAAHSEWMYQMVVAQWPERAAEIIDANNHAGPLC 170 Query: 178 IDLTVKFDIE-TWAHKLNAVMLP------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + + L ++ + S+ LPGF +G +QD +A Sbjct: 171 LRVNPRHHSAGDYLQTLRSMDIDGTLSELAPECIRLHQACSVEKLPGFEKGWVSIQDEAA 230 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + QLF VLD C+APGGKT + A A D++ RL K+R + +RL L Sbjct: 231 QVAAQLFAIEPKQKVLDACSAPGGKTCHLAELYPDAYFVARDINSERLLKVRESAERLGL 290 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 DI E+ ++ FD +L D PCS +G +RRHPD+ R D+ + Q ++L Sbjct: 291 -NIDIQELSQAQDNERECFDHILADVPCSGSGVVRRHPDIKTLRLASDLAQFHAQQLQIL 349 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +++ CS+ +Q++++ ++ L+ A ++I+ + + Sbjct: 350 QNLWPKLKPGGTLLYVTCSIFEQENDQTIRLFLQQE---------TQASIQAINKSWGYA 400 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E ++ P G DG + +++ Sbjct: 401 TEFGRQLIPQ--------RDGSDGLYFCRVQK 424 >gi|218671732|ref|ZP_03521401.1| RNA methyltransferase - sun protein [Rhizobium etli GR56] Length = 342 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 181/344 (52%), Positives = 235/344 (68%), Gaps = 4/344 (1%) Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156 DV D++ VDL +A +D NR FAKLVN++LRR+ REK E+L I ++ +P WF RL Sbjct: 1 DVPDHSAVDLPSNRANQDPRNRRFAKLVNAVLRRLGREKDEVLAEIGKVAPMPSWFLARL 60 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 E YG++ LAIS + + P IDLTVK D E WA KLN V LPTGG+RL I SL Sbjct: 61 EKAYGRDTALAISQSQLEPAAIDLTVKSDAEGWAKKLNGVALPTGGVRLAAFDGGIPSLE 120 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276 GF EG WWVQDA+ASIP +LFG L+ DLCAAPGGKTAQLI++G VTALD S+ RL Sbjct: 121 GFDEGAWWVQDAAASIPARLFGDLSGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRL 180 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 +LR NLDRL L AE + D + P + FDA+L+DAPCSSTGT RRHPDVLWT+ +D Sbjct: 181 RRLRSNLDRLGLTAETV-AADLTTFKPPEGFDAILLDAPCSSTGTTRRHPDVLWTKGPED 239 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + A Q +LL ++ + PGG++VFSNCSLD + EEVV +VL + +E VP+++ Sbjct: 240 IARLAALQERLLRHALTLLTPGGMLVFSNCSLDPAEGEEVVARVLSDT-GAIERVPISAG 298 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W ++ A ++P G R P ML+ +G++SG+DGF+A LRR Sbjct: 299 DWPGLEAA--ITPLGEFRTLPTMLKMPEGIASGLDGFYAAVLRR 340 >gi|226355844|ref|YP_002785584.1| methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115] gi|226317834|gb|ACO45830.1| putative methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115] Length = 420 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 104/438 (23%), Positives = 179/438 (40%), Gaps = 32/438 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V+ LD + L RD L IV TLR + Sbjct: 14 PARELAVRVLLRVLHADTFAAPALDAALHSAR---LPARDSGLATHIVYGTLRHHLSLST 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L +L ++ LL + LYL +AV V A+ + LVN Sbjct: 71 ALSPLLS---EDTHPKVRTLLLAGAFEKLYLGTPPHAVASEYVNLARGARLAP--PGLVN 125 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKF 184 ++LRR++ + E A S +PEW ++ + Y ++ ++D ++ ++ Sbjct: 126 AVLRRIALPQGE-----ADSSELPEWLRQVYQQAYAEQAPAVMADLLEPQPLWLSVSEAG 180 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A G R++ L + + +G + ++ V G + L Sbjct: 181 AAALEAEGSRLKGELQGTERVE-LARPLRESEAYRQGQAQPINPASLACVDALGDVEGLR 239 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 VLDL G K A L GA+VT++++ R+ + R NL RL L AE + D Sbjct: 240 VLDLAGGAGVKAAMLAARGAQVTSVELMARKHDAARANLSRLGLSAEFL-THDLTLPLDA 298 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 VL+DAPC+ +GT+R HP++ + A Q ++L + V+PGG +V+S Sbjct: 299 PAAPRVLLDAPCTGSGTLRSHPEIKLRLTPQAVEAMADLQARMLPHAAALVEPGGTLVYS 358 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS+ Q+ +VV + L + P + +++ + G + + Sbjct: 359 VCSVTPQEGPQVVAEFLANHPDF------TADAVPGLEVPHVAAGPGVLTL--------- 403 Query: 425 GVSSGMDGFFAVALRRLI 442 G+DGF+ L+R Sbjct: 404 -PLDGVDGFYIARLQRKA 420 >gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobacterium tuberculosis H37Rv] gi|15840865|ref|NP_335902.1| sun protein [Mycobacterium tuberculosis CDC1551] gi|148661198|ref|YP_001282721.1| Fmu protein [Mycobacterium tuberculosis H37Ra] gi|148822627|ref|YP_001287381.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11] gi|167968446|ref|ZP_02550723.1| fmu protein (sun protein) [Mycobacterium tuberculosis H37Ra] gi|215411052|ref|ZP_03419860.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A] gi|215445594|ref|ZP_03432346.1| fmu protein (sun protein) [Mycobacterium tuberculosis T85] gi|218753116|ref|ZP_03531912.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503] gi|253799543|ref|YP_003032544.1| SUN protein [Mycobacterium tuberculosis KZN 1435] gi|254231649|ref|ZP_04924976.1| fmu protein (sun protein) [Mycobacterium tuberculosis C] gi|254364290|ref|ZP_04980336.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem] gi|254550421|ref|ZP_05140868.1| SUN protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554802|ref|ZP_06444012.1| SUN protein [Mycobacterium tuberculosis KZN 605] gi|289757513|ref|ZP_06516891.1| fmu protein [Mycobacterium tuberculosis T85] gi|289761566|ref|ZP_06520944.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503] gi|294994969|ref|ZP_06800660.1| SUN protein [Mycobacterium tuberculosis 210] gi|297633963|ref|ZP_06951743.1| SUN protein [Mycobacterium tuberculosis KZN 4207] gi|297730952|ref|ZP_06960070.1| SUN protein [Mycobacterium tuberculosis KZN R506] gi|298524913|ref|ZP_07012322.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775590|ref|ZP_07413927.1| SUN protein [Mycobacterium tuberculosis SUMu001] gi|306780738|ref|ZP_07419075.1| SUN protein [Mycobacterium tuberculosis SUMu002] gi|306788507|ref|ZP_07426829.1| SUN protein [Mycobacterium tuberculosis SUMu004] gi|306792830|ref|ZP_07431132.1| SUN protein [Mycobacterium tuberculosis SUMu005] gi|306807307|ref|ZP_07443975.1| SUN protein [Mycobacterium tuberculosis SUMu007] gi|306967506|ref|ZP_07480167.1| SUN protein [Mycobacterium tuberculosis SUMu009] gi|306971698|ref|ZP_07484359.1| SUN protein [Mycobacterium tuberculosis SUMu010] gi|307079408|ref|ZP_07488578.1| SUN protein [Mycobacterium tuberculosis SUMu011] gi|307083976|ref|ZP_07493089.1| SUN protein [Mycobacterium tuberculosis SUMu012] gi|313658285|ref|ZP_07815165.1| SUN protein [Mycobacterium tuberculosis KZN V2475] gi|2829532|sp|P71675|Y1407_MYCTU RecName: Full=Putative methyltransferase Rv1407/MT1451 gi|1542915|emb|CAB02186.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13881065|gb|AAK45716.1| sun protein [Mycobacterium tuberculosis CDC1551] gi|124600708|gb|EAY59718.1| fmu protein (sun protein) [Mycobacterium tuberculosis C] gi|134149804|gb|EBA41849.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem] gi|148505350|gb|ABQ73159.1| Fmu protein [Mycobacterium tuberculosis H37Ra] gi|148721154|gb|ABR05779.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11] gi|253321046|gb|ACT25649.1| SUN protein [Mycobacterium tuberculosis KZN 1435] gi|289439434|gb|EFD21927.1| SUN protein [Mycobacterium tuberculosis KZN 605] gi|289709072|gb|EFD73088.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503] gi|289713077|gb|EFD77089.1| fmu protein [Mycobacterium tuberculosis T85] gi|298494707|gb|EFI30001.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A] gi|308215901|gb|EFO75300.1| SUN protein [Mycobacterium tuberculosis SUMu001] gi|308326397|gb|EFP15248.1| SUN protein [Mycobacterium tuberculosis SUMu002] gi|308334896|gb|EFP23747.1| SUN protein [Mycobacterium tuberculosis SUMu004] gi|308338705|gb|EFP27556.1| SUN protein [Mycobacterium tuberculosis SUMu005] gi|308346230|gb|EFP35081.1| SUN protein [Mycobacterium tuberculosis SUMu007] gi|308354824|gb|EFP43675.1| SUN protein [Mycobacterium tuberculosis SUMu009] gi|308358774|gb|EFP47625.1| SUN protein [Mycobacterium tuberculosis SUMu010] gi|308362711|gb|EFP51562.1| SUN protein [Mycobacterium tuberculosis SUMu011] gi|308366378|gb|EFP55229.1| SUN protein [Mycobacterium tuberculosis SUMu012] gi|323720071|gb|EGB29177.1| SUN protein [Mycobacterium tuberculosis CDC1551A] gi|326903028|gb|EGE49961.1| SUN protein [Mycobacterium tuberculosis W-148] gi|328459291|gb|AEB04714.1| SUN protein [Mycobacterium tuberculosis KZN 4207] Length = 457 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + +L A R + RD + T R +DA Sbjct: 15 PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 72 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +LR ++ A + P W + + G + A+ Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190 Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + + T + + + L +G VQD Sbjct: 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250 Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA L A+VTA++ S R + + Sbjct: 251 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N L +++ +D FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 311 AQNTR--GLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR+LL I+ +PGG+V+++ CS ++ V LR P+ Sbjct: 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRHPVHAL-----DTRPL 422 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L +++ P G D FA ALRRL Sbjct: 423 FEPVIAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 457 >gi|326560689|gb|EGE11057.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 46P47B1] Length = 448 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 51/471 (10%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 MK+ + +R ++ ++ SL+ LLD + + V + Sbjct: 1 MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLKSTEMSS-----RGFVHEL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + TLR + + + ++ + + +Q + + + Q++Y+++ +YA ++ VE A Sbjct: 55 LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161 + + LVN+ILR+ + K + +++ +P W ++L+ + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + + D H L ++ + I LP F EG Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274 VQDA A + L ++ SVLD+C APGGKT + +TA+D + Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDSDRI 291 Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+++ N+ RL L ++ D + + FD +L+DAPC++TG +RRHPD+ R Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + QR +L S +K GG++++ CS+ K ++E + LR++ Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + + + + + P + G DGF+ L + + Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448 >gi|288941789|ref|YP_003444029.1| sun protein [Allochromatium vinosum DSM 180] gi|288897161|gb|ADC62997.1| sun protein [Allochromatium vinosum DSM 180] Length = 449 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 124/444 (27%), Positives = 187/444 (42%), Gaps = 42/444 (9%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 L V+ + SLT +L + A DQ LV+ +V LR LPR+ + +L Sbjct: 27 LHAVLDRGQSLTRVLQADTTRRA-----PADQALVQEMVYGALRLLPRLRLIAGRLLERP 81 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 L + LQ L+ V + Q+ ++ +A V VE A R A LVN++LRR RE Sbjct: 82 LKPRDGDLQALILVGLYQLGFMKTPSHAAVSATVE-ATRLLGKPRMAGLVNALLRRFQRE 140 Query: 135 KIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 LL + + P+W ERL + + +I A + L V Sbjct: 141 HEALLAWVDTQPESRWLFPDWLLERLRADWPDDW-ESIVLASNERAPMALRVNPLQGTRA 199 Query: 188 TWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L + + I + + LPGF EG VQD+ A + +L Sbjct: 200 DTLAELESAGIGACAIDGLDTGVRLDQPRATRDLPGFIEGRVSVQDSGAQLAARLLDAQP 259 Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEM 296 VLD CAAPGGK + + + A+D RL + LDRL L A+ Sbjct: 260 GERVLDACAAPGGKTAAILERAGNALDLVAIDSDAARLATVGTTLDRLGLKAQVRVGDAA 319 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D + FD +L+D PCS+TG IRRHPD+ W R DDI A Q ++L ++ Sbjct: 320 DPHGDWTARPFDRILLDVPCSATGVIRRHPDIKWLRRPDDIAALAATQSRILDAIWPLLR 379 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG ++++ CSL +++E V L + L + + + ++ Sbjct: 380 PGGRLLYATCSLLAEENERQVDAFLARR-TDARALDLPTDWGRPRPPGR--------QLL 430 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + G DGFF L + Sbjct: 431 P--------TTQGHDGFFYALLAK 446 >gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodococcus opacus B4] gi|226244844|dbj|BAH55192.1| putative rRNA methyltransferase [Rhodococcus opacus B4] Length = 475 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 99/456 (21%), Positives = 161/456 (35%), Gaps = 39/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 RL + +L V + +L + R L RD L + R +DA Sbjct: 37 QPRLAARDVLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDA 93 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L +L++ Q+L VA +A V +V+ + + A VN Sbjct: 94 VIADCAGRPIDEIDGPLLDVLQLGAYQLLRTRVAPHAAVATSVDLVRAEAGP-GKAGFVN 152 Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--RVLAISDACI 173 ++LRRVS A P W + + G + + + A Sbjct: 153 AVLRRVSERSEAEWVERLAPADPVGRLAFEHAHPTWIAQVFADALGADAGELEDVLIADD 212 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + L + E A + + L EG+ VQD + Sbjct: 213 ARPAVHLVARPGEISSEELALATGGEVGRYSPYAVYLDGGDPGLLDAVREGLAGVQDEGS 272 Query: 231 SIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284 + + LDLCA PGGK A L +G + LD + + Sbjct: 273 QLVARALSLAPLDGPDAGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVAHRADLIRK 332 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 D+ D D + FD +LVDAPC+ G +RR P+ W R D+ A Q Sbjct: 333 TTKELPVDVHVADGRDPGLEGGFDRILVDAPCTGLGALRRRPEARWRRQPSDVAGLAKLQ 392 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL V+PGG+++++ CS ++ VV +R + + + Sbjct: 393 RELLASAAGLVRPGGVILYATCSPHLSETVAVVADAVRRHGLTA--LDTRELVPGVPGLG 450 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S +++ P G D F ALR+ Sbjct: 451 DGPS----VQLWPH--------RHGTDAMFMAALRK 474 >gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312] gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312] Length = 438 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 114/466 (24%), Positives = 192/466 (41%), Gaps = 60/466 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G R + +L V L+ + F L D + + +R+ Sbjct: 1 MSIGYLQRKAAWEILLKV-SHGDFSDHALEKVLRNYQFNPL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D D + ++ L+ LL + + Q+L +D + A + VE AK+ N Sbjct: 57 KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDLN-G 115 Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR SR+ + +RI+ + P W + L + G I Sbjct: 116 LAGTVNAILRNASRKLEQKILPELSSDRKERISYLESFPLWLLKDLYKWVGNSEGENIIK 175 Query: 171 ACISPLYIDLTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAE 220 A IDL + + L + GI LK P SI +LPG+++ Sbjct: 176 AFNKKPSIDLRINQLKTNLDNFLKVLHENNIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277 G+W +QD S+ L +LD CAAPG K+ L + A+D S +RL+ Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL+RL+L + + ++ DA + FD +L+DAPCS GT+ R+PD W+ Sbjct: 296 ILQSNLERLNLKSVNTLKADATSLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + I Q KLL +K G +V+S C++ ++ ++++ + + ++LV Sbjct: 356 SKEKIKSLTLLQEKLLESIFPLLKKEGTLVYSTCTICPDENNLLIERFIEKNKT-LKLV- 413 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 G +I P + DGF++ + Sbjct: 414 ------------------GQKQILPSLDYP-------GDGFYSAII 434 >gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 456 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 106/461 (22%), Positives = 189/461 (40%), Gaps = 45/461 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N R +S +L V + LD LS+++ L+ +V ++ ++ Sbjct: 15 TNPRALSVRVLEKV-QNGAYSNLQLDSMIK---QADLSEKNVHLMTTMVYGVIQHRLTLE 70 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 L + + + +++LL +S+ Q+ YLD + D+A+ D A+ AKR + + K Sbjct: 71 YWLIPFIKQP-QKLESWVRELLYISIFQMQYLDKIPDHAIFDEAINIAKR-RGHDGTRKF 128 Query: 124 VNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPL 176 V +L + R+ + + I + + +P W E L G + ++I+ + Sbjct: 129 VTGVLHAIQRQGLPDFEDIKDETKRLSIKTSLPLWLIETLNGQLGWPKTVSIASTINAAP 188 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWVQDA 228 + V L + + F +G+ +QD Sbjct: 189 SQSVRVNRELISPTDLIKLLENDGYQVTPSEVTPDALLVSGGHVAGSQAFHDGLLTLQDE 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNL 283 SA + V VLD AAPGGKT Q G V ALD+ + + ++ N Sbjct: 249 SAMLMVPSLDVHPGDKVLDAAAAPGGKTTQIATYLEKTQGGHVVALDIHDHKAKLIKENA 308 Query: 284 DRLHLYA-EDIIEMDAFDYCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 RL + + +DA K FD +LVDAPCS G +RR P++ + + D + Sbjct: 309 TRLQVADRIETQVLDARKVDEKFKDETFDRILVDAPCSGFGLLRRKPEIRYEKSLKDSYQ 368 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L + +K GG +V+ C++ ++E+V+ + L + +LVP K Sbjct: 369 LQKIQLSILDAVANKLKKGGRLVYGTCTILSTENEDVINEFLAAH-NDFKLVPT-----K 422 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ L +G + + PD G DGFF L + Sbjct: 423 TVNNLDVLDTQGMLHVYPDDF--------GSDGFFIATLVK 455 >gi|319785852|ref|YP_004145327.1| sun protein [Pseudoxanthomonas suwonensis 11-1] gi|317464364|gb|ADV26096.1| sun protein [Pseudoxanthomonas suwonensis 11-1] Length = 451 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 124/454 (27%), Positives = 192/454 (42%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ R+ ++ +L V+ + SL L A RD+ L+ A+V LR Sbjct: 21 APGVEVRVHAARVLDAVVNRGRSLKSELAPVLPRLA----DPRDRALLEAVVFAALRGRH 76 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R +A L + SL LL AQ+ L + +A +D VE A+ H A Sbjct: 77 RYEAALRGWMAKPPGAGDGSLVALLLAGCAQLDALQLPAHAALDATVEAARALGRP-HQA 135 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDL 180 LVN++LRR RE A W + +LE + + + + + ++ + Sbjct: 136 GLVNALLRRAQREGFPAADPAAAWP---RWLRMKLEAAWPEHAAAVFAASAHAAPLWLRV 192 Query: 181 TVK-FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIP 233 + + + +L + P + +LPGF +G+ VQD SA Sbjct: 193 NRRLVGRDEYRARLEEAGISASLDPRLPDGLRLDEPVPVAALPGFDQGLVAVQDGSAQQA 252 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAE 291 VLD CAAPGGK A LI ++ ALDV RRL ++ L R L E Sbjct: 253 ADALAPEPGARVLDACAAPGGKAAHLIERDPTLELLALDVDPRRLARVEDTLRRGGLLGE 312 Query: 292 DII-----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + FDA+L+DAPCS+TG +RR PD+L R +DI Q + Sbjct: 313 RVQLRPVDATAPALWWDGFTFDAILLDAPCSATGVVRRQPDILLHRRPEDIGSLVAAQAR 372 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++PGGI++++ CS+ +++ V+ L +P V +VPL A+ + Sbjct: 373 LLDAVWPMLRPGGILLYATCSILPEENAGQVEAFLARTPDAV-VVPLPEAFGHAAGPG-- 429 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + GMDGFF LR+ Sbjct: 430 --------------RQRLTGEDGMDGFFYARLRK 449 >gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii ATCC 8290] gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii ATCC 8290] Length = 444 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 102/463 (22%), Positives = 188/463 (40%), Gaps = 42/463 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK N R ++ L ++ + +S D+ L IV ++ Sbjct: 1 MKYQTNNPRELAVRTLLR-TSGGSYSNLQINAVIEST---SMSDVDKALFTNIVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN- 117 ++ L L S + + +++LL ++ Q+ YLD V A+ D +++ AK + Sbjct: 57 RMTLEYQLVPFLKDS-EKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGHDG 115 Query: 118 -----RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++ R + + +++I+ +PEW +E GK++ + + Sbjct: 116 TRRFVTGILHQMDRKGVREPDKIKDPVKKISIKYSVPEWLVSLIEGQLGKQKADQVFKSL 175 Query: 173 ISPLYIDLTVK---FDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWW 224 + +L T + +V F G+ Sbjct: 176 NQTPKQSVRFNKAKTTKSKLTDQLTQAGFQTEDSLVAGEGIIVDKGQVVHSAFFENGLLT 235 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCN 282 +QD SA +PV+ + +LD C+APGGKT Q+ + +V ALD+ + +L+ + N Sbjct: 236 IQDESAMLPVESMSIQPDDLILDACSAPGGKTTQIAANLKNGRVIALDIHQNKLKNVIRN 295 Query: 283 LDRLHLYAEDIIEM----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL + + + ++FD +LVDAPCS G +RR P++ + + DI Sbjct: 296 AKRLGVDGVVETQALDARKVDEKFSDEMFDHILVDAPCSGFGLMRRKPEIRYDKTLADIN 355 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q ++L VK GG + +S C++ +Q+++EV+++ L + P Sbjct: 356 HLSQIQLQILEAVAPKVKTGGTITYSTCTIVQQENQEVIKQFLDAHPDF-------QIEP 408 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + G I I PD G DGFF +L R Sbjct: 409 TKTDLNLTTDENGMINIYPDDF--------GSDGFFVCSLVRK 443 >gi|269127209|ref|YP_003300579.1| Fmu (Sun) domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312167|gb|ACY98541.1| Fmu (Sun) domain protein [Thermomonospora curvata DSM 43183] Length = 471 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 108/457 (23%), Positives = 166/457 (36%), Gaps = 38/457 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ V + LL + + R L+ RD L + TLR DAV Sbjct: 28 VRRTAFEVIRAVQTRDAYANLLLPVRLRE---RGLTGRDAALATELTYGTLRGRGTYDAV 84 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L+ L R L +LR+ Q+L + +A V AVE A+ A N+ Sbjct: 85 LEVCSDRPLRRIDEPLLDVLRLGAHQLLGTRIPPHAAVGTAVELARSVVG-AGRAGFANA 143 Query: 127 ILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF--YGKERVLAISDACI 173 +LR+V+ ++ I + P W L + ++ + A+ A Sbjct: 144 VLRKVATRDLKAWLDIVAPPDDELGRLSVTYSHPRWIVSALRDALGPARDEIEALLAADN 203 Query: 174 SPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + L K T A + A ++ A G VQD ++ Sbjct: 204 DRPRVTLVAKPGRATVAELVEAGAEPAAWSPQAAVLPEGDPAAIEAVAAGRAAVQDEASQ 263 Query: 232 IPV----QLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEKLRCNL 283 + + + LD+CA PGGK L GA++ A D+ + R +R + Sbjct: 264 LVTLALAAVPLDGPDGRWLDMCAGPGGKAGLLSGLAGGRGARLLACDLQEHRAALVRQAV 323 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 D A FD VL+DAPC+ G +RR P+ W RD + + Sbjct: 324 DDRTAVAVADGTA---PPWRPASFDRVLLDAPCTGLGALRRRPEARWRRDPSALAELGPL 380 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR LL + V+PGG+V + CS ++ VV VLR P L + Sbjct: 381 QRALLAAALEAVRPGGVVAYVTCSPHLAETRVVVDDVLRDRPDVQRLDAPAVLAETARGE 440 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + + P G D F LRR Sbjct: 441 LTGLGEGPYAQFWPH--------RHGTDAMFLALLRR 469 >gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22] gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22] Length = 452 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 96/464 (20%), Positives = 164/464 (35%), Gaps = 44/464 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLPRIDA 65 ++ L V + +L + + RD L +V TLR DA Sbjct: 2 LAFEALRAVDERDAYANLVLPPLLRRARQKEGPEKFDARDAALATELVYGTLRRQGTYDA 61 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L + +L + Q+L + +A V +V+ A+ + AK VN Sbjct: 62 VIASCVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVDLARVVLGD-GRAKFVN 120 Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAISD 170 ++LR++++ ++ +A + P W L + G R + + Sbjct: 121 AVLRKIAQHDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLLE 180 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWVQ 226 A + L + T L G + ++ EG VQ Sbjct: 181 ADNERPEVTLVARPGRATTEELLREEAAVAGRWSPYAVRLSEGGEPGAVDAVREGRAGVQ 240 Query: 227 DASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEK 278 D + + + + LD CA PGGK A L GA + A + R Sbjct: 241 DEGSQLVALALANAPLEGPDKAWLDGCAGPGGKAALLAALAAERGAVLLASEKQPHRAGL 300 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + L + I FD VL+D PC+ G +RR P+ W R +D+ Sbjct: 301 VAKALHGNPGPYQVIAADGTRPPWRPGAFDRVLMDVPCTGLGALRRRPEARWRRRPEDLE 360 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 A QR LL + V+ GG+V ++ CS ++ VV VL+S +L+ Sbjct: 361 GFAPLQRALLRTALDSVRVGGVVGYATCSPHLAETRAVVDDVLKSYGDAADLIDARPLLE 420 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I++ P + G D + +RR+ Sbjct: 421 GVPALGEGPD----IQLWPHL--------HGTDAMYLALIRRVA 452 >gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152] gi|54017085|dbj|BAD58455.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152] Length = 627 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 96/456 (21%), Positives = 157/456 (34%), Gaps = 39/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R V+ +L V + +L D R + RD L + R +DA Sbjct: 188 PPREVALEVLRAVRERAAYANLVLPKLLRD---RRIDGRDAALATELAYGACRAQGLLDA 244 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + + L +LR+ V Q+L + +A VD +V A+ + + VN Sbjct: 245 VIAACAGRPVAQIDGPLLDVLRLGVYQLLRTRIGAHAAVDTSVGLARAEFG-AGKSGFVN 303 Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVL--AISDACI 173 ++LR+ +R + A P W + + G + A Sbjct: 304 AVLRQAARRTAQEWVEELAPADPIGKLAFEYAHPVWIAQAFADALGARATELPELLAADD 363 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + L + E A + L EG+ VQD + Sbjct: 364 ARPTVHLVARPGEITAEELALVTGGEEGRWSPYAVYLEGGDPGGLEPVREGMAAVQDEGS 423 Query: 231 SIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLD 284 + LDLCA PGGK A L +D + + Sbjct: 424 QLVALSLTRAPLDGPDTGRWLDLCAGPGGKAALLGALAAIDGFEVDAVEPAEHRAELVRT 483 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + D D +D +LVDAPC+ G +RR P+ W R +D+ Q Sbjct: 484 ATRELPVRVHVADGRDSGLSPGYDRILVDAPCTGLGALRRRPEARWRRGPEDLRDLVRLQ 543 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL ++PGG+VV+S CS ++ VV ++R + E + D+ Sbjct: 544 RELLTAAWDLLRPGGVVVYSTCSPHLAETVSVVADLVRRT--DAEQLDTRDLLPGVSDVG 601 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ P G D F ALR+ Sbjct: 602 DGPAA----QLWPH--------RHGTDAMFMAALRK 625 >gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens] Length = 465 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 103/475 (21%), Positives = 180/475 (37%), Gaps = 62/475 (13%) Query: 17 CVMRKRISLTCL----LDLEYGDSAF---------RLLSQRDQILVRAIVNVTLRFLPRI 63 + L + + A+ L R++ LV V +R+ + Sbjct: 2 RIEEGGAFADVLSGEGDNSWEDEMAYVGRTLGFRVPSLDLRERRLVTDEVAGIVRWKRYL 61 Query: 64 DAVLDFVLI---SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 D ++ R + L+Q+LRV + +++ L++ +AV++ V+ AK Sbjct: 62 DFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLEMPPHAVLNETVQLAKVALR-AGA 120 Query: 121 AKLVNSILRRVSREKIE--------------LLQRIAGISIIPEWFKERLENFYGKERVL 166 LVN +LR V R + + + +A I P W +G++ + Sbjct: 121 GNLVNGLLRDVVRHQDKGLLPVPAVEGDQRSRARALATIHSHPVWMVRLWFTQFGEDETV 180 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAV-----------MLPTGGIRLKELPESIVSL 215 + + L +L A +RL + ++ Sbjct: 181 RLMECNNQRPKFSLRANSARGVSKQELIAELDKLEVSYSESPYLPDFVRLSAGMQDVLRS 240 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272 G VQD SA + V + +++D CAAPGGK + KV A+DV+ Sbjct: 241 GLLQNGCIAVQDESAGLVVSVIDAHPGDTIIDCCAAPGGKALNLASRLNGQGKVVAVDVN 300 Query: 273 KRRLEKLRCNLDRLHLYAE---DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + RL L ++ + ++ + D VL+DAPCS G + + D+ Sbjct: 301 EGRLRILSEAAEQQGVGDVVSPCHYDLRDYAAKAAGTADRVLLDAPCSGLGVLSKRADLR 360 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R +D+ + Q LL VKPGG++V+S CS++ ++ E + L + V Sbjct: 361 WRRSPEDVKQLTELQDSLLDAAALLVKPGGVLVYSTCSIETSENSERIAAFLSRNRDFV- 419 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 S + A +S EG+ P G+DG FA +RR +P Sbjct: 420 -----SENVEPFVPASMVSKEGFFVSFPH--------RHGVDGAFAARMRRSFEP 461 >gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens] gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens] Length = 427 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 201/458 (43%), Gaps = 52/458 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R + +L+ ++ R +L+ L+ + +S + + I R Sbjct: 1 MK--VNDRFNALKILTALIESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R+ ++ D ++ + +L + + Q+ Y++ DYAVV V + K++ Sbjct: 48 FRLQSIADTLINKRPK--DNEVWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104 Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176 LVN++LR R + +L+++A + P W +RL+ + + I++A Sbjct: 105 KGLVNAVLRNFCRRQDHILEKLAAEPVFIYGQPNWLLQRLQKNWPNDW-QFIAEANDRHP 163 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 + L V ++ + L + + +P +++LPGFA+G VQD Sbjct: 164 PMTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQD 223 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLD 284 A+ + L VLD C APGGKT ++ + ALD+ +RL+++R NL+ Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283 Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L A + ++ + FD +L+DAPCS+TG IRRH D+ R ++I + Sbjct: 284 RLDLQATVVEGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQ 343 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L + PGG++V++ CS+ ++E + + + + Sbjct: 344 VQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEH---------SDCQVSDGK 394 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P GMDGFF LR+ Sbjct: 395 WSWGRWTGHGQQILPG--------EHGMDGFFYSVLRK 424 >gi|326561732|gb|EGE12067.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 7169] gi|326562326|gb|EGE12652.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 103P14B1] gi|326569046|gb|EGE19115.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis BC1] gi|326571810|gb|EGE21816.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis BC7] gi|326575530|gb|EGE25455.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 101P30B1] Length = 448 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 51/471 (10%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 MK+ + +R ++ ++ SL+ LLD + + V + Sbjct: 1 MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLESTEMSS-----RGFVHEL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + TLR + + + ++ + + +Q + + + Q++Y+++ +YA ++ VE A Sbjct: 55 LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161 + + LVN+ILR+ + K + +++ +P W ++L+ + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGCTLR 171 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + + D H L ++ + I LP F EG Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274 VQDA A + L ++ SVLD+C APGGKT + +TA+D + Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDSDRI 291 Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+++ N+ RL L ++ D + + FD +L+DAPC++TG +RRHPD+ R Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + QR +L S +K GG++++ CS+ K ++E + LR++ Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + + + + + P + G DGF+ L + + Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448 >gi|260432196|ref|ZP_05786167.1| Fmu [Silicibacter lacuscaerulensis ITI-1157] gi|260416024|gb|EEX09283.1| Fmu [Silicibacter lacuscaerulensis ITI-1157] Length = 387 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 126/387 (32%), Positives = 207/387 (53%), Gaps = 18/387 (4%) Query: 1 MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + +LL ++ + LL A L+ D+ + + TLR Sbjct: 1 MTNTPTAARRSAIYLLDQILGEGR----LLSECLAAGALDRLAPEDRARAQRLTLETLRG 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L R D +L+ L + ++Q LR+ ++ + A + VV+ VE R +++ Sbjct: 57 LERADRLLEGHLRRTP---ALTVQNALRLGTVELCQGE-AAHGVVNAMVEIVGRSRKHGR 112 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 LVN++LR+++ E E ++ + +P+W +E L +G E V + A + +D Sbjct: 113 LKGLVNAVLRKIAAEGPEAWPKM-RVPRLPDWLREPLIAAWGAEAVKGMEQAHFAGAPLD 171 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L ++ A LPTG +R+ + + +LPG+A G WWVQDA+A++P ++ Sbjct: 172 L----TPKSGATIPMGTELPTGSVRVTDA-GQVSALPGYAAGDWWVQDAAAALPGRILAA 226 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLD+CAAPGGKT QL +GA VTALD+S+ RL ++R NL+R L A ++ DA Sbjct: 227 RPGERVLDMCAAPGGKTLQLAAAGAVVTALDISEARLARVRENLERTGLSA-QVVAGDAL 285 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D+ + +DA+L+DAPCS+TGTIRRHPD+ + +D + Q ++L + +KPGG Sbjct: 286 DH--QGQYDAILLDAPCSATGTIRRHPDLPFAKDGSEFGGLIALQARMLAHAWTLLKPGG 343 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +V+ CSL + E +++ L P Sbjct: 344 RLVYCTCSLLPDEGEVQIEEALPQHPD 370 >gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601] gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601] Length = 438 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 104/413 (25%), Positives = 179/413 (43%), Gaps = 33/413 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G R + +L V L+ + F L D + + +R+ Sbjct: 1 MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNPL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D D + ++ L+ LL + + Q+L +D + A + VE AK+ N Sbjct: 57 KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAITTTVEVAKKTDLN-G 115 Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR SR+ + + I+ + P W + L + G I Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDRKERISYLESFPLWLVKDLYKWVGNSEGENIIR 175 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAE 220 A IDL + +++ + L+ + I LK P SI +LPG+++ Sbjct: 176 AFNKKPSIDLRINQLKTNLDNFLKVLHENKIDAEIINDLNNGITLKSNPRSIKNLPGYSD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277 G+W +QD S+ L +LD CAAPG K+ L + A+D S +RL+ Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEIIAVDRSAKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL+RL+L + + ++ DA FD +L+DAPCS GT+ R+PD W+ Sbjct: 296 ILQSNLERLNLKSVNTLKADATRLIELNPKFISYFDKILLDAPCSGIGTLSRNPDSRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 + I Q KLL + +K G +V+S C++ ++ ++++ + + Sbjct: 356 SKEKIKSLTLLQGKLLESILPLLKKDGTLVYSTCTICPDENNLLIERFIEKNK 408 >gi|262282216|ref|ZP_06059985.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. 2_1_36FAA] gi|262262670|gb|EEY81367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp. 2_1_36FAA] Length = 437 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 189/457 (41%), Gaps = 37/457 (8%) Query: 1 MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M++ AR V+ +L V + L+ LSQ+D+ LV +V T+ Sbjct: 1 METRRKSARQVALEVLEEVFDQGAFSNIALNKALKKVQ---LSQQDKSLVTELVYGTVAR 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++ L ++ + LL + + ++A++ AVE AK+ K Sbjct: 58 KLTLEWYLSHLIEDRDKLDSWLYILLLLSLYQMLYLDKIPNHALIHEAVELAKKRKLGSD 117 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 K VN+ILRR+ RE +R + P W + L YG+ER LAI + Sbjct: 118 --KFVNAILRRIEREGVADVETIKRKNKRYSIQYSTPVWLVKALIEEYGEERALAILASL 175 Query: 173 ISP--LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 I +T E L A L + F G+ +QD S+ Sbjct: 176 FERNKASIRVTDLARKEELKGLLQAEDSLLAPSALVKNQGHFAGHELFTSGLITIQDESS 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + G + +LD C+APGGKT + ++ ++ ALD+ +L+ + RL L Sbjct: 236 QLVAPTLGIEGDERILDACSAPGGKTLHMASYLNTGEIIALDLYDHKLQLIEEAATRLGL 295 Query: 289 -YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 ++D + K FD +LVDAPCS G +RR PD+ + ++ D + Q Sbjct: 296 ADKVQTKKLDAREVYQKFGKDTFDKILVDAPCSGIGLLRRKPDIKYNKENADFLSLQKIQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L ++ GGI+ +S C++ Q++ +VV K L P N Sbjct: 356 LEILDSVCQSLRKGGIITYSTCTIFSQENSQVVSKFLEKHP--------NFEQVNLKHER 407 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF +R+ Sbjct: 408 KDILKDGCILITPELY--------GSDGFFISQFKRI 436 >gi|82701526|ref|YP_411092.1| sun protein [Nitrosospira multiformis ATCC 25196] gi|82409591|gb|ABB73700.1| sun protein [Nitrosospira multiformis ATCC 25196] Length = 442 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 121/464 (26%), Positives = 202/464 (43%), Gaps = 58/464 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ + V+ SLT +L + + LS + + ++ + LRF ++D +L Sbjct: 6 RLAATTVERVV-SGASLTTVLQETWRSHS--GLSDQQRGAIQDLSYGVLRFYGQLDILLG 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD-------------K 115 +L L SL+ LL V + Q+ Y A + VVD AV + + Sbjct: 63 LLLNKPLK--DQSLRYLLLVGLYQLQYSKTAPHVVVDSAVSASCSPSIDGRNSRNMLDPR 120 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYG-KERVLAISD 170 + LVN+ILR R++ LL++ A P+W+ ++L Y + + + + Sbjct: 121 HAKSIGGLVNAILRNFLRKRPALLEKTAATEVGRYSHPQWWIDKLRAQYPSRYQAVLETA 180 Query: 171 ACISPLYIDLTVK-FDIETWAHKLN--------AVMLPTGGIRLKELPESIVSLPGFAEG 221 P+ + + + ++E + L+ T P + LPGF +G Sbjct: 181 NIRPPMALRVNQRRTNVEAYQKLLHNAGLNARRPENEWTEEALELFHPVPVEKLPGFGQG 240 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLR 280 + VQD +A + L + + VLD CAAPGGK+A L+ A+D RLE+L+ Sbjct: 241 LVSVQDVAAQMAAPLLCPQSGMRVLDACAAPGGKSAHLLELTDLELTAVDNDGERLERLK 300 Query: 281 CNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N RL L II DA + + FD +L DAPCS++G +RRHPD+ W R D+ Sbjct: 301 QNFTRLGLKPYRIIHGDATHPGEWWDGRPFDRILADAPCSASGVVRRHPDIKWLRRESDL 360 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A QRK L + GG +++ CS+ +++ V+ L P L+P + Sbjct: 361 AQFAEIQRKTLDALWQTLVKGGKLLYVTCSIFAEENGLQVESFLNHHP-DARLLPFSVPE 419 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ PD+ DGFF L +L Sbjct: 420 IVEG------------QLLPDLH---------HDGFFYALLEKL 442 >gi|296114107|ref|YP_003628045.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis RH4] gi|295921801|gb|ADG62152.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis RH4] Length = 448 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 197/471 (41%), Gaps = 51/471 (10%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 MK+ + +R ++ ++ SL+ LLD + + + Sbjct: 1 MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLKSTEMSS-----RGFAHEL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + TLR + + + ++ + + +Q + + + Q++Y+++ +YA ++ VE A Sbjct: 55 LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161 + + LVN+ILR+ + K + +++ +P W ++L+ + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + D H L ++ + I LP F EG Sbjct: 172 FAAPIFLRVNTKFSDNASYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274 VQDA A + L ++ SVLD+C APGGKT + +TA+D + Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGDRI 291 Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+++ N+ RL L ++ D + + FD +L+DAPC++TG +RRHPD+ R Sbjct: 292 RLKRVHENISRLKLDTKDVSVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + QR +L S +K GG++++ CS+ K ++E + LR++ Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + + + + + P + G DGF+ L + + Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448 >gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp. ATCC 27244] Length = 435 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 202/454 (44%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +N R L V + SL+ +L+ ++S+RD+ L + LR Sbjct: 9 AKNLNLRAQVIKTLLAV-QNGQSLSSVLNQHI-----NMVSERDRGLYHELTLGCLRQWY 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A+ +L L +L+ L + + QIL + +A + V AK+ + Sbjct: 63 SLKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPVHAAISETVNAAKQ-LGFEPMS 119 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN+ILRRVSRE E + +P W +RL+ + E+V + A + L Sbjct: 120 GLVNAILRRVSRETDEFETALNNTHGLPSWLFKRLKKDWP-EQVEPLCQALKQVAPLTLR 178 Query: 182 V---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASI 232 V + + + L+ + + +I LPGF G + VQD A + Sbjct: 179 VNERQVSRDEYLDILDEEQIDARECEFSDVGIVLRQTGNITLLPGFEAGGFSVQDEHAQL 238 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL--HL 288 L L+ V+D CAAPGGKTA + K+ A+D +R+ ++ NL+RL +L Sbjct: 239 CATLLPDLDGKVVVDACAAPGGKTAHILERFNPKKLIAIDQDPKRIVRIGENLERLALNL 298 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + ++ D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 299 DNVEILVADATTWQAQEPVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTVALQQQIL 358 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 Q +K GG +++ CS+ K ++E+ + K P E+ I + Sbjct: 359 QQMWQQLKVGGTLLYITCSILKTENEQQMVKFFAEHPNAKEIK---------ITADWGIE 409 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ ++++ Sbjct: 410 QMHGRQLLPSDQSG--------DGFYYCRIQKIA 435 >gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL 15998] gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL 11379] gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL 15998] gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL 15998] Length = 477 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 43/467 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R ++ L V + +L + + RD L +V TLR D Sbjct: 20 PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDGRDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + V Q+L + +A V +VE A+ AK V Sbjct: 80 AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V+ ++ +A + P W L + G R + Sbjct: 139 NAVLRKVTAHDLDGWVEKVAPPYDEDAEDHLAVVHSHPRWIVSALWDALGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 +A + L + T + A+ +L E Sbjct: 199 EADNERPEVTLVARPGRSTTEELVKALGEDNSLPGRWSPYAVRMAEGGEPGALEAVRESR 258 Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274 VQD + + + + LD CA PGGK A L GA + A + Sbjct: 259 AGVQDEGSQLVAAALAAVPVEGRDTRWLDGCAGPGGKAALLAALAAERGATLLAAEKQPH 318 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + I FD +L+D PCS G +RR P+ W R Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWLPGTFDRILMDVPCSGLGALRRRPESRWRRRA 378 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393 +D+ A QR LL + + V+ GG+V ++ CS ++ VV+ VL+ PVE + Sbjct: 379 EDLEAFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGEPVEAEWI 438 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ A+ P+ +++ P + G D + LRR Sbjct: 439 DARPLLPGVPALGEGPD--VQLWPHL--------HGTDAMYLALLRR 475 >gi|119503584|ref|ZP_01625667.1| sun protein [marine gamma proteobacterium HTCC2080] gi|119460646|gb|EAW41738.1| sun protein [marine gamma proteobacterium HTCC2080] Length = 438 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 122/439 (27%), Positives = 188/439 (42%), Gaps = 38/439 (8%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 SL L LS ++ LV+ +V TLR PR++ + +L K Sbjct: 20 NGESLVRALPKGLEP-----LSLENRPLVQELVYGTLREWPRLEGIALQLLRKPPRAKDA 74 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI--EL 138 + L+ + Q+ L+V +A V VE AK A L+N LR R+K E Sbjct: 75 DVLCLILTGIHQLSGLNVPSHAAVGETVEAAKS-LGKSWAAGLINGCLRNYQRQKGALED 133 Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN- 194 + + +P+W + + + ++ I+ A + L V + L Sbjct: 134 QLTESQSNALPDWLWQAICKQWP-DQASEIAGASREHPPMTLRVNLQRGSRADYVSTLQN 192 Query: 195 -----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 A+ + P + S+PGF EG VQDASA + Q N+ S+ D C Sbjct: 193 ADIPVAINPHIATAITLQTPRPVSSIPGFLEGWSSVQDASAQLAAQFLQPNNDESIFDAC 252 Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKK 305 AAPGGKT AKV A D+S +RLE L+ N RL+L + + A + Sbjct: 253 AAPGGKTCHVLECAPKAKVLAADISDQRLESLQENSTRLNLPLDVKVVDATQASVTLGPR 312 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FDA+L D PCS+TG IRR+PD+ TR DI QR +L VKPGG +++ Sbjct: 313 QFDAILADVPCSATGVIRRNPDIKITRKAADIATFHQQQRDILEGLWPLVKPGGRLLYVT 372 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL + +++ V++ P E++PL G +R + Sbjct: 373 CSLLEAENDNVIEAAQSQLP-QCEVMPLAG---------------GTLRFNTRFGLQTLP 416 Query: 426 VSSGMDGFFAVALRRLIQP 444 + DG + L++++ P Sbjct: 417 TLNNGDGLYFSLLKKVVTP 435 >gi|326573497|gb|EGE23463.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis O35E] Length = 448 Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 103/471 (21%), Positives = 199/471 (42%), Gaps = 51/471 (10%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 MK+ + +R ++ ++ SL+ LLD + + V + Sbjct: 1 MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLKSTEMSS-----RGFVHEL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + TLR + + + ++ + + +Q + + + Q++Y+++ +YA ++ VE A Sbjct: 55 LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161 + + LVN+ILR+ + K + +++ +P W ++L+ + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + D H L ++ + I LP F EG Sbjct: 172 FAAPIFLRVNTKFSDNASYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274 VQDA A + L ++ SVLD+C APGGKT + +TA+D ++ Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQSQGSHQSVLDMCCAPGGKTTHLLEMFHMKHLTAIDGNRI 291 Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+++ N+ RL L ++ D + + FD +L+DAPC++TG +RRHPD+ R Sbjct: 292 RLKRVHENISRLKLDTKDISVVHADGTSWRSDQCFDVILLDAPCTATGVLRRHPDIGLLR 351 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + QR +L S +K GG++++ CS+ K ++E + LR++ Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + + + + + P + G DGF+ L + + Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448 >gi|166713736|ref|ZP_02244943.1| Sun protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 437 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 199/453 (43%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 8 AAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 64 AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 122 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + AG P W ++++ + + + I+ A ++P+++ + Sbjct: 123 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQVRADWGERAEGIFIASAQMAPMWLRV 179 Query: 181 -TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFAEG VQD SA Sbjct: 180 QHSRIDPAAYVARLAELGISAQTDAVLPDAVRLHSAVPVSQLPGFAEGDVSVQDGSAQQV 239 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + VLD CAAPGGK A G ++ ALDV RRLE+++ L R A+ Sbjct: 240 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLAALDVDARRLERVQQTLQRSVASAQ 299 Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 300 IALQAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 359 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V L+ +P + PL + + + Sbjct: 360 LDATWRTLRPGGQLLYTTCSLLARENQTQVDAFLQRTP-DAQPQPLGARFGHAAGPG--- 415 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 416 -------------RQRFPGEQHCDGFFYALLLK 435 >gi|325963042|ref|YP_004240948.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter phenanthrenivorans Sphe3] gi|323469129|gb|ADX72814.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter phenanthrenivorans Sphe3] Length = 533 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 102/476 (21%), Positives = 170/476 (35%), Gaps = 51/476 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L V + +L L +RD + LR DA Sbjct: 72 PARLVAFEVLRAVAAEDAYANLVLPARIRHH---GLDKRDAGFATELTYGALRGQGTYDA 128 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L + ++ LR+ V Q+L + V +A +D V A+ + L+N Sbjct: 129 ILARCVDRPLDQLDPAVLDALRIGVHQLLAMRVPAHAALDQTVGLARAVIG-AGPSALIN 187 Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKE-----RVLAI 168 ++LR+V+ +E + A PEW + + + Sbjct: 188 AVLRKVAAHTLEEWLDLLVAGETDETKIAALRFAHPEWIVRAMRQSLVAHGRSATEISDL 247 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226 +A + ++L + L +P + +G VQ Sbjct: 248 LEADNAAPVVNLVALPGLGNLDEALENGAIPGELVEGSALSSGGDLGRFSSVRQGTMRVQ 307 Query: 227 DASASIPVQLFGTLNNLS------------VLDLCAAPGGKTAQ----LIVSGAKVTALD 270 D + + + LDLCA PGGK A GA + A + Sbjct: 308 DVGSQLVARAMAAAELSQSTGGQDSGTPEAWLDLCAGPGGKAALLGALAQQQGATLLANE 367 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDV 328 + R + L + ++ D D ++ FD VLVD PCS G +RR P+ Sbjct: 368 TAPHRARLVSQALSAVPHETWEVRTGDGRDLGLERPESFDRVLVDVPCSGLGALRRRPES 427 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W R D+ QR+LL ++ V+PGG+V + CS ++ VV LR Sbjct: 428 RWRRSPKDLADLGPLQRELLASALAAVRPGGVVAYVTCSPHPAETTAVVADALRKRDDLE 487 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 L + S+ A+ E ++ P + G D F +R+ +P Sbjct: 488 LLDAGAALDRVSLPGALGAGHESTAQLWPHV--------HGTDAMFLALIRK--KP 533 >gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2] gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2] Length = 431 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 113/454 (24%), Positives = 201/454 (44%), Gaps = 41/454 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N RL++ LL +++ + E DS L RD+ + +V +R + Sbjct: 2 RTNVRLLAYRLLRKYEKEK-----FISREDVDSVLSFLDDRDRRFFKELVWGVVRKEELL 56 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++ +L +++ LR+ Q+L+++ V DYA V V+ K N +F K Sbjct: 57 DWYINQLLKK--KDVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK----NENFKK 110 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LVN++LRR+ + + PEW +F ++ VL I PL + L V Sbjct: 111 LVNAVLRRLRTVPEPKELHL--VYSHPEWIVNYWRSFLPEKAVLRIMKWNQEPLPVMLRV 168 Query: 183 K---FDIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 E L + +++L + +G+ VQ S+ + Sbjct: 169 NSLAATKEEVIKILAEEGTEAIPGKHAPFSLIVRKLGVPMNDSRVINDGLASVQGESSQL 228 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 L VLD CAAPGGKT +L+ K+ A+D+S+ +++ + + RL L Sbjct: 229 VPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288 Query: 290 AEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + DA + FD VLVDAPC+S GT R HP+VL + +D K + Q ++ Sbjct: 289 SIETKIADAERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNKEDFEKFSEIQLRM 348 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + Q ++ GGI+++S C++ K+++ EVV++ + E++ + K ++ Sbjct: 349 VQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK-DAEVIDIRDKM-KEFEVEGIW 406 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++ + PD F+ LR++ Sbjct: 407 DGYGFL-MLPDETITP---------FYISVLRKM 430 >gi|84622205|ref|YP_449577.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574935|ref|YP_001911864.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366145|dbj|BAE67303.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519387|gb|ACD57332.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae pv. oryzae PXO99A] Length = 437 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 199/453 (43%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 8 AAGIASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 64 AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 122 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + AG P W ++++ + + + I+ A ++P+++ + Sbjct: 123 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQVRADWGERAEGIFIASAQMAPMWLRV 179 Query: 181 -TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFA+G VQD SA Sbjct: 180 QHSRIDPAAYVARLAELGISAQTDVVLPDAVRLHSAVPVSQLPGFADGDVSVQDGSAQQV 239 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR----LH 287 + VLD CAAPGGK A G ++ ALDV RRLE+++ L R Sbjct: 240 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLAALDVDARRLERVQQTLQRSVPSAQ 299 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + D + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 300 VALQAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 359 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V L+ +P + PL + + + Sbjct: 360 LDATWRTLRPGGQLLYTTCSLLARENQTQVDAFLQRTP-DAQAQPLGAQFGHAAGPG--- 415 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 416 -------------RQRFPGEQHCDGFFYALLLK 435 >gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby] gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy] gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str. Corby] gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy] Length = 427 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 110/458 (24%), Positives = 200/458 (43%), Gaps = 52/458 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R + +L+ ++ R +L+ L+ + +S + + I R Sbjct: 1 MK--VNDRFNALKILTALIESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R+ ++ D ++ + +L + + Q+ Y++ DYAVV V + K++ Sbjct: 48 FRLQSIADTLINKRPK--DNEVWIVLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104 Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176 LVN++LR R + +L+++A + P W +RL+ + I++A Sbjct: 105 KGLVNAVLRNFCRRQDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNNW-QFIAEANDRHP 163 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 + L V ++ + L + + +P +++LPGFA+G VQD Sbjct: 164 PMTLRVNVLKNSVDEYLDLLKKSGIEAFKHPVVPDGITLAIPCDVMTLPGFAQGSVSVQD 223 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLD 284 A+ + L VLD C APGGKT ++ + ALD+ +RL+++R NL+ Sbjct: 224 AAPQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKESGLASCVALDLDPQRLQRVRDNLN 283 Query: 285 RLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L A + ++ + FD +L+DAPCS+TG IRRH D+ R ++I + Sbjct: 284 RLDLQATVVQGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQ 343 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L + PGG++V++ CS+ ++E + + + + Sbjct: 344 VQSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIARFVAEH---------SDCQVSDGK 394 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P GMDGFF LR+ Sbjct: 395 WSWGRWTGHGQQILPG--------EHGMDGFFYSVLRK 424 >gi|167772291|ref|ZP_02444344.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM 17241] gi|167665394|gb|EDS09524.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM 17241] Length = 450 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 173/461 (37%), Gaps = 57/461 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +AR ++ L + +D + L R+ A+ L Sbjct: 25 MKK--DARYTAAQALLRMESAGAYSNLTIDSLIEKN---GLDAREGAFAAALFYTVLERR 79 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID VL L + Q LR+ V Q++++D V DYA V +V + Sbjct: 80 LTIDHVLAAYCARGLASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTRA-LGCAK 138 Query: 120 FAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDAC 172 + VN +LR R +L + P W E + YG+ L + A Sbjct: 139 ASGFVNGVLRAFLRADKAVLPVKGGTAERLSVEYSCPVWLVEAWLSAYGEAAALRVLRAS 198 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVW 223 + I L + +L A P G L SL F EG++ Sbjct: 199 LGRPPIYLRANTLRVSAQQLCERLAAEGVAAQLAEPPAGCLLARGRVEPESLASFGEGLF 258 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLR 280 VQD ++ + G L VLD+CAAPGGK+ + + ++ A D+ ++R ++ Sbjct: 259 HVQDRASQLCAAALGALPGERVLDVCAAPGGKSFTIAEHMENSGELVARDLHQKRARMVQ 318 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 C RL L DA Y FD VL D PCS G IRR P++ + + + Sbjct: 319 CGAKRLGLSIIHASAGDAAVYDASLGSFDRVLCDVPCSGFGVIRRKPEIKY-KPQKSVEG 377 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q K+L ++K GG +V+S C+L ++E VVQ++L + +V + Sbjct: 378 LPEIQYKILKTSTHYLKSGGTLVYSTCTLLPAENERVVQRLLDETNGAFNIVEQRVYTGE 437 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 DGFF L++ Sbjct: 438 -----------------------------DTDGFFVSVLKK 449 >gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24] Length = 451 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 101/462 (21%), Positives = 162/462 (35%), Gaps = 45/462 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLPRIDA 65 ++ L V + +L + + RD L +V TLR DA Sbjct: 2 LAFEALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRRQGTYDA 61 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + L + +L + V Q+L + +A V +VE A+ + AK VN Sbjct: 62 IIADCVDRPLREVDPPVLDVLSLGVHQLLGTRIPSHAAVSASVELARVVLGD-GRAKFVN 120 Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAISD 170 ++LR+V+R+ ++ +A + P W L + G R + Sbjct: 121 AVLRKVARDDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELLA 180 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWVQ 226 A + L + T L G + ++ E VQ Sbjct: 181 ADNERPEVTLVARPGRATREELLGEEAAVPGRWSPYAVRLSEGGEPGAVDAVRENRAGVQ 240 Query: 227 DASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEK 278 D + + LD CA PGGK A L GA + A + R Sbjct: 241 DEGSQLVALALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAFLLASEKQPHRAGL 300 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + LD + I FD VLVD PC+ G +RR P+ W R +D+ Sbjct: 301 VARALDGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPEDLD 360 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 A QR LL + V+ GG+V ++ CS ++ VV VL+ P EL+ Sbjct: 361 GFAPLQRGLLRNALEAVRVGGVVAYATCSPHLAETRAVVTDVLKQHPGT-ELLDARPLLP 419 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ P + G D + LRR Sbjct: 420 GVPGLGEGPD----VQLWPHV--------HGTDAMYLALLRR 449 >gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395583|gb|AAS03451.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10] Length = 464 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 105/465 (22%), Positives = 168/465 (36%), Gaps = 51/465 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V + L + R + RD + T R +DA Sbjct: 18 PARAAAFEVLRAVSERDAYANLALPALLRE---RGIIGRDAAFATELTYGTCRTRGLLDA 74 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 75 VIGAAAGRPPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA-AIEFDSARAGFVN 133 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLA--ISD 170 +LRR++ A + P W + + G + Sbjct: 134 GVLRRIAGRDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLA 193 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + A + + + L +G+ VQD Sbjct: 194 SDDERPQVHLAARPGVLTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQD 253 Query: 228 ASASIPVQL----FGTLNNLSVLDLCAAPGGKT--------AQLIVSGAKVTALDVSKRR 275 + + + + LDLCA PGGKT + S +VTA++ + RR Sbjct: 254 EGSQLVARALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSESQFRVTAVEPAPRR 313 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + + N L +++ +D + FD VLVDAPC+ G +RR P+ W R Sbjct: 314 ADLVVENTR--GLP-VEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPG 370 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+ QR+LL I+ +PGG+V+++ CS ++ VV LR P V + Sbjct: 371 DVPALTKLQRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHP--VSALDARP 428 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + D+ +++ P G D FA ALRR Sbjct: 429 LFEPVADLGDGPH----VQLWPH--------RHGTDAMFASALRR 461 >gi|254302720|ref|ZP_04970078.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322912|gb|EDK88162.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 434 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 97/437 (22%), Positives = 194/437 (44%), Gaps = 37/437 (8%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 K +L+ + + LS +++ + I +R +D +++ +K Sbjct: 15 DKGAYSNIVLNDAFRE---FFLSPKEKAFMTEIFYGVIRNKKFLDYIIERYTK---DIRK 68 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI--- 136 ++ LLR+S+ QI +++ D VV A E AK+ + +K +N LR R K Sbjct: 69 EWIRNLLRISIYQITFMNSDDKGVVWEATELAKKY--STAISKFINGTLRNYLRNKDSEL 126 Query: 137 ---ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK------FDIE 187 + + + IP+WF + LE YG E + + Y+ + V + E Sbjct: 127 KRLDDEKNYEILYSIPKWFYDTLEKQYGNENLKQAITSLKKIPYLSVRVNKLKYSEEEFE 186 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + + ++ I++ F G QDAS+ + + G + N VLD Sbjct: 187 EFLKEKDIQIIKKVDTVYYVNSGLIINSEEFKTGKIIAQDASSYLAAKNLGVMPNELVLD 246 Query: 248 LCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCP 303 +CAAPGGKTA + + + +V A+D+ + +++ + N+ +L + I +D Sbjct: 247 ICAAPGGKTAVLAEEMKNSGEVIAIDIHQHKIKLIDTNMKKLGIDIVKAIVIDARNVNKQ 306 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD +LVD PCS G IR+ P++L++++ ++I + A Q ++L +K GG +++ Sbjct: 307 GRKFDKILVDVPCSGYGVIRKKPEILYSKNRENIEELAKLQLEILNSAADILKDGGELIY 366 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C++ +++ + ++K L + +++ G I Sbjct: 367 STCTITDEENTDNIKKFLEERKEFKV-----EKLYIPENVSGDYDKLGGF--------CI 413 Query: 424 DGVSSGMDGFFAVALRR 440 + MD F+ + L++ Sbjct: 414 NYKEEIMDNFYIIKLKK 430 >gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuberculosis SUMu003] gi|306797229|ref|ZP_07435531.1| SUN protein [Mycobacterium tuberculosis SUMu006] gi|306803111|ref|ZP_07439779.1| SUN protein [Mycobacterium tuberculosis SUMu008] gi|308331083|gb|EFP19934.1| SUN protein [Mycobacterium tuberculosis SUMu003] gi|308342392|gb|EFP31243.1| SUN protein [Mycobacterium tuberculosis SUMu006] gi|308350182|gb|EFP39033.1| SUN protein [Mycobacterium tuberculosis SUMu008] Length = 457 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 109/463 (23%), Positives = 167/463 (36%), Gaps = 46/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + +L A R + RD + T R +DA Sbjct: 15 PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 72 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +LR ++ A + P W + + G + A+ Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190 Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + + T + + + L +G VQD Sbjct: 191 SDDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250 Query: 228 ASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA L A+VTA++ S R + + Sbjct: 251 EGSQLVARALTLAPVDGDTGRWLDLCAGPGGKTALLAGLGLQCAARVTAVEPSPHRADLV 310 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 N L +++ +D FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 311 AQNT--RGLP-VELLRVDGRHTDLDPGFDRVLVDAPCTGLGALRRRPEARWRRQPADVAA 367 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR+LL I+ +PGG+V+++ CS ++ V LR P+ Sbjct: 368 LAKLQRELLSAAIALTRPGGVVLYATCSPHLAETVGAVADALRRRPVHAL-----DTRPL 422 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L +++ P G D FA ALRRL Sbjct: 423 FEPVIAGLGEGPHVQLWPH--------RHGTDAMFAAALRRLT 457 >gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia cinnamea P4] gi|319437398|gb|EFV92413.1| RNA binding Sun protein [Dietzia cinnamea P4] Length = 446 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 165/459 (35%), Gaps = 45/459 (9%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +++ V + L E + L RD L + TLR +D ++ Sbjct: 2 ALTVMAAVRERAAYANLTLPAELRRAK---LDTRDAALATELTYGTLRAQGLLDRIITLA 58 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH----------- 119 + + L+R+ Q+L+ + +A VD +VE A+ R Sbjct: 59 SSRPVEEIDPPVLDLIRLGAYQLLFTRIGAHAAVDTSVEAARTAGLGRAGAFVNAVLRKI 118 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLAISDACISPLY 177 A+ ++ + + + + R+A + PEW + G + + A + Sbjct: 119 SARDADAWVEALRDGVTDPVARMAIGTAHPEWIARAFADSLGAAAGELPELLAADDARPR 178 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + L + E A + +L EG+ VQD + + Sbjct: 179 VHLAARPGAISAEELALVTGGREGELSPYAVHLDSGDPGTLDAVREGLAAVQDEGSQLVA 238 Query: 235 QLFGTLNNL-----SVLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDR 285 LDL A PGGK + G +T ++VS R + +R Sbjct: 239 LAAARAPLDGPDGGRWLDLAAGPGGKAVLLGALAEIEGGTLTGVEVSPHRADLVREATRD 298 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + D D + FD VL+DAPCS G +RR P+ W + DI QR Sbjct: 299 L---PVTVHTADGRDPGLEPGFDRVLLDAPCSGLGALRRRPEARWRKTAADIPALVSLQR 355 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY----WKSI 401 +LL + V+PGG+V+++ CS ++ VV + R VE + + Sbjct: 356 ELLDSAMRLVRPGGVVLYATCSPHLSETVSVVHEAARR--DDVETLDVREILADIGGAVG 413 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L W+++ P G D F ALRR Sbjct: 414 GRPDGLGEGPWVQLWPH--------RHGTDAMFMAALRR 444 >gi|300115538|ref|YP_003762113.1| sun protein [Nitrosococcus watsonii C-113] gi|299541475|gb|ADJ29792.1| sun protein [Nitrosococcus watsonii C-113] Length = 435 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 114/456 (25%), Positives = 200/456 (43%), Gaps = 38/456 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R++++ +L V+ + SLT +L A L R+Q + + +R+L Sbjct: 1 MAKSANTRIIATSVLVRVLDQGRSLTGVLP-----PAMAHLPAREQAFTQTLCYGVVRWL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK---RDKEN 117 PR+D ++ +L L + L LL + + Q+ L + YA + V A+ + Sbjct: 56 PRLDYLVQKLLHKPLRARDRDLYALLLLGLYQLTELGIPSYAALSETVNAAENLGKPWAK 115 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL- 176 + + + LR + + ++ A + P+W + + + + I+ P Sbjct: 116 KMLNGTLRAYLRNETALQAQVATHEAAHTAHPQWLLDTIRHSWPDHWPQIITANNNHPPL 175 Query: 177 YIDLT-VKFDIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + ++ + E + +L + T + E P + +LPGF +G VQD + Sbjct: 176 SLRINRLQNNRENYLRELRRNDIKAWPIPHTESGVILEQPRQVTTLPGFLKGQISVQDGA 235 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 V L VLD CAAPGGKT+ + A + ALD+ RL +L NL RL Sbjct: 236 GQRAVPLLALAPGQRVLDACAAPGGKTSHILELEPQLATLLALDLDATRLGRLENNLKRL 295 Query: 287 HLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L AE I + + FD +L+DAPCS +G IRRHPD+ R DI+ A Q Sbjct: 296 QLKAEVIQGNALQPDAWWDGIPFDRILLDAPCSGSGVIRRHPDIKVLRRESDILPLAVLQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++LL + PGG++++ CS+ ++E + + L S P E + +++ Sbjct: 356 KRLLSALWPLLAPGGMLLYCTCSILPIENERQIHEFLLSHPEGQE---------RPLEVP 406 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L ++ + +DGF+ L + Sbjct: 407 WGLPQTVGRQLL--------TGTEELDGFYYACLEK 434 >gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis DSM 16047] gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis DSM 16047] Length = 455 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 196/461 (42%), Gaps = 45/461 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +AR +S L V+ L+ + +S LS DQ L IV T+++ Sbjct: 14 STSKSARAISLATLIKVLEDGSYSNISLNNSFKNS---NLSVADQNLATRIVYGTIQYRL 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L ++ + L + LL +S+ QI++L+ V + AV+D A + AK+ + Sbjct: 71 FLEYQLKGLIRTKLTE--RYINPLLLMSLYQIIFLNKVPNRAVLDEANKLAKQFGRHHSS 128 Query: 121 A-KLVNSILRRVSREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDACI 173 ++VN ILR R + L + + + PEW + G ER +I + Sbjct: 129 GYRIVNGILRSFIRRGVILPKENNKLEYLSVKESVPEWLVKYFVKNLGIERTQSILTSIN 188 Query: 174 SPL--YIDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLPGFAEGVWWVQ 226 P + ++ + +L + I F +G +Q Sbjct: 189 KPAKNCVRISSLVNATEVFQRLKDEGYQPKWSNLSDHDVTLKHGGIGQSDLFKKGQLTIQ 248 Query: 227 DASASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLRCN 282 D +AS+ V+ F VLD C+APGGKT Q+ + V ALD+ +++L + N Sbjct: 249 DEAASLVVEAFDFDKTQVEHVLDACSAPGGKTVQIAENLADGDVIALDIHEKKLRLVAEN 308 Query: 283 LDRLHL-YAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 R+H+ DA K F +LVDAPCS G +RR P++ +T+ D+ Sbjct: 309 AKRMHVADKIKTQACDARKAGKIFNKGEFTKILVDAPCSGLGLLRRKPEIRYTKSLQDLH 368 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q +L ++ G +V+S CS+ +++EEVV+K L+ V Sbjct: 369 SLQKIQLAILDSVSVPLQKNGELVYSTCSISMEENEEVVKKFLQRHSQFV---------L 419 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 K ++ S G ++I PD +G DGFF + Sbjct: 420 KPFKLSKLESKTGMLKIMPD--------QNGNDGFFIAKFK 452 >gi|300934517|ref|ZP_07149773.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium resistens DSM 45100] Length = 551 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 102/472 (21%), Positives = 166/472 (35%), Gaps = 41/472 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 SG R + +L V ++ L L+ RD + TLR L Sbjct: 79 SGDRVRDLVLQVLRDVTQEGAFANLALPKALKQER---LTGRDAAFATELTYGTLRALGL 135 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DAV+ + + + +LR+ Q+L V D+A VD AV AK + E + + Sbjct: 136 LDAVIAKAAGRPVAKIDSMVLDILRLGAYQVLRTRVDDHAAVDTAVNLAKANGEGK-ASG 194 Query: 123 LVNSILRRVSREKIELLQRIAG----------ISIIPEWFKERL------ENFYGKERVL 166 VN +LR ++R E P W + + Sbjct: 195 FVNGVLRTITRTPAEDWLARVAGGDGIADLGLRHAHPGWIAAAFNSALGGNDDAPAPDLE 254 Query: 167 AISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + A + L + E A + + + + + Sbjct: 255 SALAADDERPQVHLAARPGQMSGEELALVTGGDEGKFSPYAVYLSEGAPGDIEPVRDRLA 314 Query: 224 WVQDASAS--------IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKR 274 VQD + + ++ LDLCA PGGKTA + A +D + Sbjct: 315 SVQDEGSQLIALALVRASIGSGEAVDRGRWLDLCAGPGGKTAFIASWAVAEQARVDAIEV 374 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPD 327 + + + ++ D P++ FD VLVDAPCS G +RR P+ Sbjct: 375 APHRAKLVTSAVENLPVNVHVGDGRKVREIAGLDVPQQGFDRVLVDAPCSGLGALRRRPE 434 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 W + DDI Q++LL + P G+V++S CS + ++ +VV+ V + Sbjct: 435 ARWFKQPDDIPSLVALQKELLTSALEVTAPRGVVIYSTCSPHQAETTDVVRAVADKTGAE 494 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + V + D A LS R ++ G D F ALR Sbjct: 495 ILDVREYLPELAATDAAARLSD--GARTADPRFVQLWPHRHGTDAMFIAALR 544 >gi|33866211|ref|NP_897770.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102] gi|33639186|emb|CAE08194.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102] Length = 441 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 185/467 (39%), Gaps = 60/467 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G+ R ++ +L V L+ + L+ D+ L + +R Sbjct: 6 TKGLAPRRLAWEVLQAV-AAGAYADVALERALREHP---LAGADRGLATELAYGAIRRRR 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA LD + ++ L+ LL V + Q+L++ + A V+ V+ AK Sbjct: 62 PLDAWLDRLGRIPASKQPPKLRWLLHVGLYQLLWMERIPASAAVNTTVDLAKAV-GLARL 120 Query: 121 AKLVNSILR---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 A +VN +LR ++ + +A +P+W L + G E A++ A Sbjct: 121 APVVNGMLRSALRARESGQLLDTPADWAAALALEHSLPDWLPPLLLQWRGAEGAAAVAAA 180 Query: 172 CISPLYIDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEG 221 C +DL V + A + A + G++++ + S PG+ +G Sbjct: 181 CNQVPSLDLRVNPLRASRAEVMAALESAGISSHPIDGCPQGLQVEGHKGDLRSWPGYDDG 240 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 W VQD +A L +LD CAAPGGKT L + A++ A+D S RL++ Sbjct: 241 HWCVQDRAAQWVTPLLAAQPGDRILDACAAPGGKTTHLAELVNDQAEIWAVDRSAGRLKR 300 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + N RL + + DA + F +L+DAPCS GT+ RHPD W Sbjct: 301 VAANAARLGHGSIQALAADAEQLLKDRPEWRGRFQRILIDAPCSGLGTLARHPDARWRMT 360 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 I QR LL + + G +V++ C++ ++ V+ +L P L Sbjct: 361 PSAIEGLLPLQRSLLEGLLPLLAETGTLVYATCTIHPAENTAQVRWLLELHPALKLLDET 420 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + PD SG DGF+A L+R Sbjct: 421 --------------------QRWPD-------AESGGDGFYAAVLQR 440 >gi|84619221|emb|CAJ42345.1| hypothetical Sun-family protein [Streptomyces steffisburgensis] Length = 475 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 103/466 (22%), Positives = 167/466 (35%), Gaps = 45/466 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR----LLSQRDQILVRAIVNVTLRFLP 61 R+++ L V + +L + + RD L +V TLR+ Sbjct: 22 PVRILAFEALRAVDERDAYANLVLPPLLRKAREKEGPEKFDARDAALATELVYGTLRWQG 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DAVL + L + +L + Q+L + +A V VE A+ + A Sbjct: 82 TYDAVLASCVDRPLGDVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRA 140 Query: 122 KLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENF--YGKERVL 166 K VN++LR+V++ ++ +A + P W L + G++ + Sbjct: 141 KFVNAVLRKVAQHDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRDGIE 200 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGV 222 + A + L + T L G + ++ +G Sbjct: 201 ELLRADNERPEVTLVARPGRATAEELLGEDAAVPGRWSPYAVRLAEGGEPGAVEAVRDGR 260 Query: 223 WWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278 VQD + + + LD CA PGGK A L A+ AL V+ + Sbjct: 261 AGVQDEGSQLVAIALAGAPLDGPDRRWLDGCAGPGGKAALLGALAAERGALLVASEKQTH 320 Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + R +I D FD VLVD PC+ G +RR P+ W R Sbjct: 321 RAGLVARALEGNPGPYQVIAADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRP 380 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 DD+ A QR LL + V+ GG+V ++ CS ++ VV VL+ P ELV Sbjct: 381 DDLEGFAPLQRGLLRTALESVRVGGVVGYATCSPHLAETRAVVADVLKQYPDT-ELVDAR 439 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ +++ P G D + +RR Sbjct: 440 PLLPGVPDLGEGPD----VQLWPH--------RHGTDAMYLALIRR 473 >gi|319744301|gb|EFV96665.1| RNA methyltransferase Sun [Streptococcus agalactiae ATCC 13813] Length = 440 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 124/451 (27%), Positives = 203/451 (45%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L V K L+ S LS +D+ LV IV T+ ++ Sbjct: 9 ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + + LL +S+ Q+LYLD + D+A+V+ AV AK + KL+N Sbjct: 66 LSHFI-VDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLIN 124 Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176 ++LRRVS E +R + +P W ++L + YG+ R LAI ++ Sbjct: 125 AVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLNDQYGETRALAIMESLFERNKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +T LN L + S F +G+ +QD S+ + Sbjct: 185 SLRVTDLSQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 N VLD C+APGGKT+ + ++ VTALD+ +LE + N RL L Sbjct: 245 LKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKT 304 Query: 294 IEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA +Y P+ FD +LVDAPCS G IRR PD+ + + D Q +L Sbjct: 305 KKLDASKAHEYFPEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++ +V++K L + P N + + Sbjct: 365 VCQTLRKGGIITYSTCTIFEEENFQVIEKFLANHP--------NFEQVELSHTQEDIVKR 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I I+P+ DGFF ++R+ Sbjct: 417 GCISISPEQY--------HTDGFFIGQVKRI 439 >gi|296110622|ref|YP_003621003.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154] gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154] Length = 457 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 98/460 (21%), Positives = 195/460 (42%), Gaps = 44/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+++ L+ + + L+ L + D+ L+ +V ++ + Sbjct: 10 NPRVLAVQTLAKI-KNGAYSNLQLNQVIK---QHQLGEADKRLLTTLVYGVIQHRLTFEY 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + +++LL ++ Q+ +LD + ++A+ + ++E AK + K V Sbjct: 66 WLTPFIGN--KKIDAWVRELLYTAMFQMEFLDKIPEHAIFNESIEVAK-ILGHVGTGKFV 122 Query: 125 NSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +IL ++R+ + +QR++ +P W L +G+E+ A+ + Sbjct: 123 TAILHNIARQGLRDIDDIKDPIQRLSIEKSLPVWLINELVKQHGEEKTRALVETINDAPS 182 Query: 178 IDLTVKF---DIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + L + T + S + +G +QD S Sbjct: 183 QSIRVNTVVATDDDVVKSLESENYTTVKSLVADHAYIVSGGHVASSKAYHDGWLTIQDES 242 Query: 230 ASIPVQLFGT-LNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDR 285 A +PV+ ++LD AAPGGKT Q+ AK+TALD+ + +++ + N R Sbjct: 243 AMLPVESMHLTAEVKTILDAAAAPGGKTTQIAQCISADAKITALDIHEHKIKLINNNAQR 302 Query: 286 LHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 LH+ I++ FD +LVDAPCS G +RR P++ + + +D+ A Sbjct: 303 LHVADRIQTRILDARKVPNEIDTKFDRILVDAPCSGFGLLRRKPEIRYDKTLEDVQNLAQ 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L V G++V+S C++ Q++++VV K L + EL+P + + Sbjct: 363 LQFDILDSVSQNVADNGMMVYSTCTILSQENDDVVTKFLLAH-TEFELIPTQTVKNLKSN 421 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + P+ + DGFF ++ Sbjct: 422 RGEDV-----LHVYPNDYQ--------TDGFFVATFKKRA 448 >gi|289664806|ref|ZP_06486387.1| hypothetical protein XcampvN_17488 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 436 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 198/453 (43%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 7 TAGVASRLAAARVLTAVFDQGRSLKTELAATLPGIG----DPRDRALVEAICFAVIRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 63 AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + AG P W +++L + + + + A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQLRADWGDRAEGIFTASAQMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFAEG VQD SA Sbjct: 179 QRSRIDPAAYVARLVELGIRAHTDAVLPDAVRLHSAVPVSQLPGFAEGDVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290 + VLD CAAPGGK A G ++TALDV RRLE+++ L R A Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERYPGLQLTALDVDARRLERVQQTLQRTVPNAQ 298 Query: 291 ---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 D + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALHAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ + + PL + + + Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQTQVEAFLQRT-ADAQAQPLGAQFGHAAGPG--- 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 415 -------------RQRFPGEQHCDGFFYALLLK 434 >gi|291612482|ref|YP_003522639.1| sun protein [Sideroxydans lithotrophicus ES-1] gi|291582594|gb|ADE10252.1| sun protein [Sideroxydans lithotrophicus ES-1] Length = 424 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 192/447 (42%), Gaps = 45/447 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V+ +LT +L L+ +++ ++ + TLR+ R+ +LD + Sbjct: 8 AAKAVHKVVHGGRNLTQVLSETLR--KESKLTAQEKGALQDLCYGTLRYYSRLAYMLDSL 65 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L + L LL V++ Q+ + + +VD AV AK N + LVN++LR Sbjct: 66 LQRPVRE--PLLGSLLMVAIYQLEHTKAGKHVIVDQAVHAAK--NTNPAASGLVNAVLRN 121 Query: 131 VSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFD 185 R + Q+ +W+ L+ YG++ + P + + + Sbjct: 122 YLRRQSVLREAANQKEESHYAYRQWWINALKAQYGEQAAEIMQAGNRHPPMTLRVNARHT 181 Query: 186 IE-----TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 A + A + + E P + LP F EG VQDA A Sbjct: 182 TAPGYQTVLAAQDIAAQIVEPDALILECPVPVEKLPKFNEGWVSVQDAGAQYAAHFLDVH 241 Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMD 297 + + VLD CAAPGGKTA L+ + ++ A+D + RL ++R NL RL L A Sbjct: 242 DGMRVLDACAAPGGKTAHLLELADIELLAVDKDELRLGRVRENLQRLKLDAQVVCGDAAS 301 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D+ K F+ +L D PCS++G +RRHPD+ W R +DI A Q ++L S + Sbjct: 302 PEDWWDGKAFERILADVPCSASGVVRRHPDIKWLRRQEDIANFAVQQAQVLESLWSLLAS 361 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RI 415 G ++++ CS+ +++++VV + L ++ LS G I ++ Sbjct: 362 DGKLLYATCSVFARENQQVVAEFLARHDDASKIE---------------LSATGMIDGQL 406 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 PD DGFF L + Sbjct: 407 LPDRE---------HDGFFYALLHKQA 424 >gi|58580210|ref|YP_199226.1| hypothetical protein XOO0587 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424804|gb|AAW73841.1| Sun protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 473 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 199/453 (43%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 44 AAGIASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 99 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 100 AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 158 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + AG P W ++++ + + + I+ A ++P+++ + Sbjct: 159 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQVRADWGERAEGIFIASAQMAPMWLRV 215 Query: 181 -TVKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFA+G VQD SA Sbjct: 216 QHSRIDPAAYVARLAELGISAQTDVVLPDAVRLHSAVPVSQLPGFADGDVSVQDGSAQQV 275 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR----LH 287 + VLD CAAPGGK A G ++ ALDV RRLE+++ L R Sbjct: 276 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLAALDVDARRLERVQQTLQRSVPSAQ 335 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + D + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 336 VALQAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 395 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V L+ +P + PL + + + Sbjct: 396 LDATWRTLRPGGQLLYTTCSLLARENQTQVDAFLQRTP-DAQAQPLGAQFGHAAGPG--- 451 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 452 -------------RQRFPGEQHCDGFFYALLLK 471 >gi|326563104|gb|EGE13377.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella catarrhalis 12P80B1] Length = 448 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 198/471 (42%), Gaps = 51/471 (10%) Query: 1 MKSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 MK+ + +R ++ ++ SL+ LLD + + V + Sbjct: 1 MKNNIKKLHNHQLSSRAKVILVIEEIL-NGKSLSELLDPLLESTEMSS-----RGFVHEL 54 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + TLR + + + ++ + + +Q + + + Q++Y+++ +YA ++ VE A Sbjct: 55 LLGTLRQWWALSRISESLIENPVT--DQGVQAAINIGLYQLIYMNIPEYAAINDTVE-AL 111 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-----------G 161 + + LVN+ILR+ + K + +++ +P W ++L+ + Sbjct: 112 KQLGKEYGTGLVNAILRKTQKSKTKFTKKVNKNHSLPNWLAKQLKQDWGEYYDELGRTLR 171 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + + D H L ++ + I LP F EG Sbjct: 172 FAAPIFLRVNTKFSDNVSYCQILDEHHIQHSLVSLGYNQAQAVRLDGGVRIGELPYFDEG 231 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKR 274 VQDA A + L ++ +VLD+C APGGKT + +TA+D Sbjct: 232 WVSVQDAHAQLAGFLLAPTLQAQGSHQAVLDMCCAPGGKTTHLLEMFHMKHLTAVDSESA 291 Query: 275 RLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 RL+++ N+ RL L ++ D + + FD +L+DAPC++TG +RRHPD+ R Sbjct: 292 RLKRMHENISRLKLDTKDISVVHADGTSWRSDRCFDVILLDAPCTATGVLRRHPDIGLLR 351 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + QR +L S +K GG++++ CS+ K ++E + LR++ Sbjct: 352 QEQDIATTVNLQRSILDNLWSRLKVGGVLLYVTCSILKAENERQIIDFLRANDDA----- 406 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + + + + + P + G DGF+ L + + Sbjct: 407 --NAIPFDLSLPHQIKQQVGYQCLPLDTK-------GGDGFYYALLTKTAK 448 >gi|227496158|ref|ZP_03926464.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226834303|gb|EEH66686.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 527 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 108/476 (22%), Positives = 185/476 (38%), Gaps = 51/476 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLVS L+ V + +L + L +RD A+ TLR R DA Sbjct: 64 AARLVSLEALTKVRQDGGFANLVLPPMLDAAR---LDRRDAGFATALTYGTLRLQGRYDA 120 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + L + + +LR+ Q+L + VA +A V V+ A R A LVN Sbjct: 121 IIAQCVDRRLDQLDGVVLDVLRLGTHQLLGMRVATHAAVSATVDLA-SHAAGRGAAGLVN 179 Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENF-----YGKERVLAI 168 ++LRR+S++ +E ++ P W + L +E + A+ Sbjct: 180 AVLRRISQKDLEQWLAELTEQAADELNALSATHSHPVWVVKALRQALASNDRPQEELEAL 239 Query: 169 SDACISPLYIDLTVKFDI---------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 +A + + L + + A + +A + + LP Sbjct: 240 LEADNADPEVVLCARPGLISPEHLVKEAEEATRGHAHVGDRSPYAVVLPGGDPGRLPAVR 299 Query: 220 EGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKVTALDV 271 V+D + + + + LDLCA PGGK A+ GA++ A +V Sbjct: 300 SSAAGVEDEGSQLVALVLSEAAVEGRDERWLDLCAGPGGKAALLGARAAQRGARLVANEV 359 Query: 272 --SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + L + + + + +D VLVDAPCS G++RR P+ Sbjct: 360 TAHRAELVRASVRAVPEGVVEVRCDDGRLYGQAEPGRYDRVLVDAPCSGLGSLRRRPEAR 419 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPI 386 W R D+ + A QR+LL+ ++ V+ GG+V + CS ++E VV+ V L Sbjct: 420 WRRQPTDVAELAELQRELLVSALAAVRVGGLVAYVTCSPHVLETELVVRDVIRRLEREGR 479 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 E++ + + A + +++ P + G D F LRR Sbjct: 480 GAEVLHAGDVATRVAPVPPAGADRPMLQLWPHL--------DGTDAMFCALLRRTA 527 >gi|88856227|ref|ZP_01130887.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1] gi|88814546|gb|EAR24408.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1] Length = 454 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 101/466 (21%), Positives = 174/466 (37%), Gaps = 41/466 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +AR V+ ++ V LL + + LS D L + TLR Sbjct: 1 MSYAQSARRVALDVIMAVRESDAYANLLLPVHLDRAK---LSPADAGLATELTYGTLRMQ 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 DAV+ + + + +LR++ Q+L + V +A VD +V AK R Sbjct: 58 GYYDAVIAQAAGRPVSKIDPPVLDVLRLATHQLLSMRVPSHAAVDESVRLAKTI-GTRSA 116 Query: 121 AKLVNSILRRVSREKIELLQRI------------AGISIIPEW----FKERLENFYGKER 164 VN++LR +++ E + A P W F++ L ++ Sbjct: 117 VGFVNAVLRAITQHDAETWRERVIGAAGSGEEALALAYSHPMWVTRAFRQVLVAEGREDE 176 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + + A P + + A ++ + + A G Sbjct: 177 LEGLLAADNVPARVSVAALPGFAD-AASIDVTVAEYSPVGGTLREGDPGKNAAIASGRAR 235 Query: 225 VQDA----SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276 VQD +A + + S LD+CA PGGK A L GA + A ++ R Sbjct: 236 VQDEGSQLAALTLSRARPIVAGESWLDMCAGPGGKAALLAAEALIGGATLIANELIPARA 295 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + +R L + E D + FD +L+DAPC+ G +RR P+ W + Sbjct: 296 KLVRNALAVFESPPV-VWEKDGVEIGQDHPEEFDRILLDAPCTGLGALRRRPEARWRKQP 354 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D+ + Q LL ++ +KPGG++ + CS +++ +V VLR P V + Sbjct: 355 GDVAQLGAVQTALLHSALAALKPGGVLAYVTCSPHAAETKAIVGSVLRKVP-SVSKMDTP 413 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + L +++ P G D F L + Sbjct: 414 AVLREISKAELDLPEASHVQLWPH--------RHGTDAMFIQLLVK 451 >gi|300741740|ref|ZP_07071761.1| ribosomal RNA small subunit methyltransferase B [Rothia dentocariosa M567] gi|300380925|gb|EFJ77487.1| ribosomal RNA small subunit methyltransferase B [Rothia dentocariosa M567] Length = 580 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 103/498 (20%), Positives = 172/498 (34%), Gaps = 67/498 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L+ V + +L L RD + TLR DA Sbjct: 86 PARLVAFEVLNAVAQNDSYANLVLPGTIRAHH---LDHRDAGFATELTYGTLRSQGTYDA 142 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L L + + +LR+ V Q+L + V +A ++ +V A+ A VN Sbjct: 143 ILAHCADRPLEKIGTTTLIVLRMGVHQLLSMRVPAHAALNQSVALARAQIGG-GPANFVN 201 Query: 126 SILRRVSREKIELLQ------------RIAGISIIPEWFKERLENF-----YGKERVLAI 168 ++LRRVS E + A P W + + + Sbjct: 202 AVLRRVSERSREEWYARLEADAKDDTEKFALAKSHPIWIVRSMRQALAAHGRSPAEIQEL 261 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226 +A ++L I + + L EG Q Sbjct: 262 LEADNQAPVVNLIALPGIGDLQEAFEKGAVEGELVEDSALYSAGDLGRLESVREGTVRAQ 321 Query: 227 DASASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEK 278 D + + + + + LDLCA PGGK A GA+V A + + R + Sbjct: 322 DVGSQLVTRALAAAPLEGQDSAWLDLCAGPGGKAALLAALGTQRGARVVANESAAHRAKL 381 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIR 323 + +L L ++ D + P++ FD VLVD PCS G +R Sbjct: 382 VSQSLRPLSPDEYVVLTGDGREISQTLAQNAERLPAGIEPEQKFDRVLVDVPCSGLGALR 441 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R P+ W + DI QR+LL +PGG++ + CS +++ +V ++L + Sbjct: 442 RRPEARWRKSPRDIADLLPLQRQLLEAACEVTRPGGVIAYVTCSPHAAETQNIVAEILET 501 Query: 384 SPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDM-------------------LEK 422 + + L S S D AL+ + P + + Sbjct: 502 GKVHLLDTQSILQSVALPSADGQSALAGDKAPGYRPQVRLKKSSSVRQEDILDEASTTAQ 561 Query: 423 IDGVSSGMDGFFAVALRR 440 + + G D F R+ Sbjct: 562 LWPHTHGTDAMFLALFRK 579 >gi|227495439|ref|ZP_03925755.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM 15436] gi|226830986|gb|EEH63369.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM 15436] Length = 487 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 93/471 (19%), Positives = 169/471 (35%), Gaps = 48/471 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ L V + +L + L RD +V TLR L R+D Sbjct: 29 KARTVAFETLLKVDVEDAYANIVLPKAITE---ANLDSRDASFATELVYGTLRNLARVDW 85 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE--------- 116 V++ + + ++ +LR++ QIL+L V D+A V +VE K Sbjct: 86 VIEQCMPKKIADLDPEVRAILRLTAHQILHLRVPDHAAVAESVELTKHVAGFGVEKFVNG 145 Query: 117 -NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170 R + R + + R++ + PEW + + A+ Sbjct: 146 VARAMVEHTPGEWERRIKTIDANVTRVSVLYSHPEWIVRAFAQALQAHGRNPKELTALLK 205 Query: 171 ACISPLYIDLTVKF---------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 A + L + D + L G Sbjct: 206 ADNDNPKVMLCARPGQILPVELADDAERYLDAEVAPGAYSEWSVAITHGDPGKLAAVCHG 265 Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273 VQD + +L +N LD+CA PGGK A ++GA + A +VS Sbjct: 266 AAAVQDEGSQLVASALAELDLANDNGKWLDMCAGPGGKAGLVAAYAQLAGATLLANEVSA 325 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 R + + ++I D K F +++DAPCS G +RR P+ W R Sbjct: 326 HRAHLVEQTVREF--DNVEVIVGDGRKIAEKGKFSRIILDAPCSGLGALRRRPESRWRRQ 383 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +D+ Q +LL GI ++ G++ + CS + ++ + +Q++ I + Sbjct: 384 PNDLNGLIKLQAELLEAGIDALEKDGVLAYITCSPHESETVKQIQRIAGRDDIKILDSKA 443 Query: 394 NSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ ++ +P G +++ P + D F ++++ Sbjct: 444 AVEKVSMSEIELSATPIGNGNSVQLWPHL--------HTTDAMFLCLIQKV 486 >gi|325926148|ref|ZP_08187509.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas perforans 91-118] gi|325543493|gb|EGD14915.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas perforans 91-118] Length = 436 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 7 TAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L +LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 63 AYDIALRQWLERALPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + A + P W +++L + + + + A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFAEG VQD SA Sbjct: 179 QRSRTDPARYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + VLD CAAPGGK A G ++TALDV RRLE+++ L R A+ Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLTALDVDARRLERVQQTLQRTVPDAQ 298 Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALQAADAADPDAWWDGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ +P + PL + + + Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTP-DAQAQPLGAQFGHAAGAG--- 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + DGFF L + Sbjct: 415 -------------RQRFPGETHCDGFFYALLLK 434 >gi|282853850|ref|ZP_06263187.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J139] gi|282583303|gb|EFB88683.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J139] gi|314923543|gb|EFS87374.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL001PA1] gi|314966589|gb|EFT10688.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL082PA2] gi|314981514|gb|EFT25608.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA3] gi|315092178|gb|EFT64154.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA4] gi|315092889|gb|EFT64865.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL060PA1] gi|315103589|gb|EFT75565.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL050PA2] gi|327327412|gb|EGE69188.1| sun protein [Propionibacterium acnes HL103PA1] Length = 458 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 179/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V + L + L+ RD +V+ T R Sbjct: 10 RKADPARRLAYSALLAVETQGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGTDEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVPTLVVRPGLAERDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLF-----GTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A +TA+++ + R + + Sbjct: 245 LVILALLRATKVNSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVAKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D P++ F AVL D PCS G++RR P+ W R D+ + A Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPEQSFSAVLADVPCSGLGSLRRRPEARWRRTPTDVEELA 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG+V + CS + ++ +++ + P+ V P A I Sbjct: 364 QLQRRLLISAVNLARPGGVVEYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPDI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|302550113|ref|ZP_07302455.1| ribosomal RNA small subunit methyltransferase B [Streptomyces viridochromogenes DSM 40736] gi|302467731|gb|EFL30824.1| ribosomal RNA small subunit methyltransferase B [Streptomyces viridochromogenes DSM 40736] Length = 472 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 101/463 (21%), Positives = 163/463 (35%), Gaps = 42/463 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + + RD L +V TLR D Sbjct: 22 PVRILAFEALRAVDERDAYANLVLPPLLRKAREKDDFDARDAALATELVYGTLRRQGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + Q+L + +A V VE A+ + AK V Sbjct: 82 AVIATCVDRPLGEVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRAKFV 140 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V++ ++ +A + P W L + G R + Sbjct: 141 NAVLRKVAQHDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225 A + L + T L G + ++ +G V Sbjct: 201 HADNERPEVTLVARPGRATAEELLGEDAAVPGQWSPYAVRLTEGGEPGAIAAVRDGRAGV 260 Query: 226 QDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLE 277 QD + + LD CA PGGK A L GA + A + R Sbjct: 261 QDEGSQLVAIALANAPLDGPDRRWLDGCAGPGGKAALLGALAAERGATLLASEKQPHRAG 320 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + L+ + I FD VLVD PC+ G +RR P+ W R DD+ Sbjct: 321 LVARALEGNPGPYQVITADGTRPAWRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPDDL 380 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR LL + V+ GG+V ++ CS ++ VV VL+ P +LV Sbjct: 381 EGFAPLQRGLLRTALESVRVGGVVAYATCSPHLAETRAVVADVLKQVPDT-DLVDARPLL 439 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ +++ P + G D + +RR Sbjct: 440 PGVPDLGDGPD----VQLWPHL--------HGTDAMYLALIRR 470 >gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein [Arabidopsis thaliana] gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana] gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis thaliana] Length = 523 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 110/480 (22%), Positives = 190/480 (39%), Gaps = 63/480 (13%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--IL------------VRAIV 53 R VS+ L + LL+ + S +S ++ V +V Sbjct: 58 RAVSAVRLMRIEYGGAFAD-LLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVV 116 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 T+R+ +D ++ + + + L Q+LR+ V +I+ D+ YAVVD V A Sbjct: 117 GGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLA 176 Query: 112 KRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLE 157 K VN ILR+ V + + +A + P W R Sbjct: 177 KVALRP-GAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWV 235 Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIE----TWAHKLNAVMLPTG-------GIRLK 206 + G + + + L + +LN++ +P +R+K Sbjct: 236 KYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIK 295 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---G 263 +++V EG+ VQD SA + V + ++D CAAPGGKT + Sbjct: 296 TGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQ 355 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 + A+DV++ RL L + I D + + +D VL+DAPCS G Sbjct: 356 GMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLG 415 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + + D+ W R +D+++ Q +LL VK GG++V+S CS+D +++E V+ Sbjct: 416 VLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAF 475 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L P + P+ S + ++ +G+ + V +DG FA L R Sbjct: 476 LLRHP-EFTIDPVTSFVP-----SSFVTSQGFF--------LSNPVKHSLDGAFAARLVR 521 >gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana] Length = 531 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 107/473 (22%), Positives = 186/473 (39%), Gaps = 63/473 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--IL------------VRAIVNVTLRFL 60 L + LL+ + S +S ++ V +V T+R+ Sbjct: 73 LMRIEYGGAFAD-LLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDVVGGTIRWR 131 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D ++ + + + L Q+LR+ V +I+ D+ YAVVD V AK Sbjct: 132 RYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRLAKVALRP- 190 Query: 119 HFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 VN ILR+ V + + +A + P W R + G + Sbjct: 191 GAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWVKYLGLDE 250 Query: 165 VLAISDACISPLYIDLTVKFDIE----TWAHKLNAVMLPTG-------GIRLKELPESIV 213 + + L + +LN++ +P +R+K +++V Sbjct: 251 ATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIKTGLQTVV 310 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALD 270 EG+ VQD SA + V + ++D CAAPGGKT + + A+D Sbjct: 311 QAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMD 370 Query: 271 VSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPD 327 V++ RL L + I D + + +D VL+DAPCS G + + D Sbjct: 371 VNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRAD 430 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R +D+++ Q +LL VK GG++V+S CS+D +++E V+ L P Sbjct: 431 LRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHP-E 489 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ S + ++ +G+ + V +DG FA L R Sbjct: 490 FTIDPVTSFVP-----SSFVTSQGFF--------LSNPVKHSLDGAFAARLVR 529 >gi|229826167|ref|ZP_04452236.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC 49176] gi|229789037|gb|EEP25151.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC 49176] Length = 455 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 102/463 (22%), Positives = 194/463 (41%), Gaps = 39/463 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N R + + ++ +L + + L + + + + ++ + +D Sbjct: 3 VNEREIVLDM-FLSLKDGKPGHIVLKDTLDNYLY--LDKASRGFITRLYEGSIEKMIYLD 59 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 V++ + + + K ++ L+ +V QI ++D V D A ++ AV+ AK+ + + Sbjct: 60 FVINSFSKTPVKKLKPIIKILMETAVYQIFFMDRVPDSAAINEAVKLAKK-RGLAGLSGF 118 Query: 124 VNSILRRV---------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN +LR + + E ++ + +P+ E YG + I +A Sbjct: 119 VNGVLRNIARNRENIALPDKDKEYIRYLEVKYSMPKEVTEHFIKEYGNVQAEEILEAFEK 178 Query: 175 PLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSL------PGFAEGVWWV 225 I V E KL + + I+ L F G + + Sbjct: 179 KQPIVARVNGTRLTREELVKKLTEEDVKVSTDTVFPESLKILELDSLNFLESFENGDFVI 238 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNL 283 QD S+ ++ N VLD+CAAPGGKT ++TA D+S+++ + N+ Sbjct: 239 QDESSQFIGKIAELPQNAKVLDICAAPGGKTLLMAEKPEAERITACDISEKKTGLIEENI 298 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 +R+ + + DA + K D V+ D PCS G I R D+ + + I + A Sbjct: 299 NRMGIKKVITMVNDATVFNKKFEEDFDLVICDLPCSGLGVIGRKRDIKYNITGNKIKELA 358 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV---VQKVLRSSPIPVEL-VPLNSAY 397 QR++L +VK GG ++FS C++ K ++EE + + SP+ + + Sbjct: 359 KLQREILENAGKYVKKGGYLIFSTCTMSKLENEENFKFISEFSGFSPVDFSDKIKDSVVR 418 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +K+ ++ + +G+IR+ P L G DGFF R Sbjct: 419 YKAGGRLISEAEKGYIRLLPGEL--------GTDGFFISEFMR 453 >gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805] gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805] Length = 430 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 101/406 (24%), Positives = 157/406 (38%), Gaps = 33/406 (8%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L V L+ L D+ L + T+R+ +DA LD + Sbjct: 2 ALEVLEAV-AAGAYADVALERALRQHP---LQAADRGLATELAYGTIRWRQWLDAWLDKL 57 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++ L+ LL + + Q+L + + A V+ +VE AK R A +VN +LR Sbjct: 58 GKVPARKQPPRLRWLLHLGLYQVLRMERIPPAAAVNTSVELAKGGPLAR-LAPVVNGLLR 116 Query: 130 ---------RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 E +A +P WF L + G + ++ AC +DL Sbjct: 117 AALRARDAGDGLVRPSEPEMELAQDQSLPLWFTRDLLRWCGPVQAAQVAQACNQVPPLDL 176 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASA 230 + + A + + PGF EG W VQD +A Sbjct: 177 RINRLRASPAEMASRFAEHCMPTAPIPGCPDGLQVLDPAGDLRQWPGFDEGYWCVQDRAA 236 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 L VLD CAAPGGK L + +V A+D S RL+++ N RL Sbjct: 237 QWVAPLLAVEAGQRVLDACAAPGGKATHLAELMGDQGEVWAVDRSPGRLQRVAANASRLG 296 Query: 288 LYAEDIIEMD-----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + + D FD +L+DAPCS GT+ RHPD W I Sbjct: 297 SHCIHALAADASQLLQQRPQWMASFDRILLDAPCSGLGTLARHPDARWRISESSIADLVQ 356 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 Q LL + +KPGG +V++ C++ ++ + + L+ P V Sbjct: 357 LQAGLLDALLPLLKPGGRIVYATCTVHPAENTDQIHGWLQRHPQLV 402 >gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC 23263] gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC 23263] Length = 440 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 107/466 (22%), Positives = 175/466 (37%), Gaps = 59/466 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S NAR + L + R+ + +F + D L +V L+ Sbjct: 6 NSSNNAREQAYKSLLKIDREGAFSNLEIRQTLSRLSF---NAEDANLYTLLVYGVLQNQI 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D LD ++ R + +++LR++ QIL LD + DYA V AV + NR Sbjct: 63 FLDYCLDQLIKEP-KRVDFETREILRIAAYQILKLDRIPDYAAVSEAVLLCGKV--NRRA 119 Query: 121 AKLVNSILRRVSRE-----------KIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 VN +LR + R + +A IP YGKE AI Sbjct: 120 KGFVNGVLRNLIRNKTRLFDISNGSFRNEKEVLATRFSIPLPVVHYYFEAYGKEAAPAIL 179 Query: 170 DACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPG--------F 218 P + + V E A KL A L +L + + F Sbjct: 180 AQMNVPAPLSVRVNTLKLSREDLAAKLQAEGLAVEVGQLSSDCLYLKGISASELVQSCWF 239 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275 +G +QD A + +L +LD+CAAPGGKT L + ++ A D+ R Sbjct: 240 KDGWLTIQDQGAMLIAELLDPRPGERILDMCAAPGGKTTHLAQLMSDAGEIIARDIYPSR 299 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 L+ + RL + D + FD +L+DAPCS G IRR P++ + Sbjct: 300 LQLIEDAAKRLGISNIKTELWDGIQPPKEEAAFDKILLDAPCSGYGVIRRKPEIRYRGTK 359 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 +D QR LL G+ ++ G +V++ C++D +++ + +V+R + Sbjct: 360 EDRRAIRQTQRTLLNNGLDLLRSDGKLVYATCTIDPEENNRQIARVVRERSDVIAEAETE 419 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ G DGF+ + L + Sbjct: 420 --------------------------RMTSPLTDGCDGFYMIRLIK 439 >gi|331007627|ref|ZP_08330769.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC1989] gi|330418567|gb|EGG93091.1| Ribosomal RNA small subunit methyltransferase B [gamma proteobacterium IMCC1989] Length = 442 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 110/466 (23%), Positives = 200/466 (42%), Gaps = 52/466 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +AR+++ +L + +++ SL + L ++++ + + R+ Sbjct: 1 MIKKTSARIIAVKILLRLRQQKGSL------ASEFTLANELDEQEKRFAQELCYGLCRWY 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++ L +L L K + LL + + Q+ ++ VA +A ++ V+ A ++ Sbjct: 55 FLLEFQLSDLLEKPLKNKDQDIYLLLLLGLYQLQFMRVAPHAAINETVDAAVFFRKP-WA 113 Query: 121 AKLVNSILRRVSREKI------------ELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 KL+N +LR RE + A P+W +E + + + AI Sbjct: 114 KKLINGVLRSFQREHMSGDDSIVSANDINQKIPSADKISHPQWLQEAIVKAWP-AQSKAI 172 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAE 220 A L V + + ++ + SLP FA+ Sbjct: 173 FSANNQHPPFTLRVNQQHASVSEYTQLLVDDRSFQTTSYSDVGLTLEKAVDVNSLPNFAQ 232 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL---DVSKRRLE 277 G VQD +A + L N VLD C APGGKT + ++AL D+ +RRL Sbjct: 233 GHSSVQDEAAQLAAPLLQLAPNQRVLDACCAPGGKTCHIGEMEPSLSALVGLDLEERRLV 292 Query: 278 KLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 +++ NL RL++ DII D + +LFD +L+DAPCS+TG IRRHPD+ R Sbjct: 293 RVKENLQRLNI-NADIICGDGTAPDTWWDGQLFDRILLDAPCSATGVIRRHPDIKLLRQA 351 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 D+ A Q +LL + GGI++++ CS+ Q++ +V+++ + + + Sbjct: 352 QDVSDVAALQLRLLNALWPLLADGGILLYATCSILPQENTQVIEQFIANH---------D 402 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +A I+ ++ ++ P + G DGF+ L + Sbjct: 403 NAQHDVIEAEWGITQPYGRQLLPQ--------TKGHDGFYYARLIK 440 >gi|289667876|ref|ZP_06488951.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 436 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 198/453 (43%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 7 TAGVASRLAAARVLTAVFEQGRSLKTELAATLPGIG----DPRDRALVEAICFAVIRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 63 AYDVALRQWLERPLPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + AG P W +++L + + + + A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAVSDDAGW---PSWLRKQLRADWSDRAEGIFTASAQMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFAEG VQD SA Sbjct: 179 QRSRIDPAAYVARLAELDIRAHTDAVLPDAVRLHSAVPVSQLPGFAEGDVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA- 290 + VLD CAAPGGK A G ++TALDV RRLE+++ L R A Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERYPGLQLTALDVDARRLERVQQTLQRTVPNAQ 298 Query: 291 ---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 D + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALHAADAADTDAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ + + PL + + + Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQTQVEAFLQRT-ADAQAQPLGAQFGHAAGPG--- 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 415 -------------RQRFPGEQHCDGFFYALLLK 434 >gi|294648678|ref|ZP_06726140.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194] gi|292825468|gb|EFF84209.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194] Length = 435 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 196/454 (43%), Gaps = 40/454 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +N R L V + SL +L+ ++S+RD+ L + LR Sbjct: 9 AKHLNLRAQVIKTLLAV-QNGQSLASVLNQHI-----NIVSERDRGLYHELTLGCLRQWY 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A+ +L L +L+ L + + QIL + +A + V AK+ + Sbjct: 63 SLKAITLPLLTKPLD--NEALESCLYLGLYQILCTRIPVHAAISETVNAAKQ-LGFEPMS 119 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN+ILRRVSRE E + +P W +RL+ + ++ I + L Sbjct: 120 GLVNAILRRVSRETDEFQTALNNTHGLPSWLFKRLKKDWP-DQFDEICQNLKQVAPLTLR 178 Query: 182 V---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 V + + + L+ + L +I LPGF EG + VQD A + Sbjct: 179 VNERQVSRDEYLEILDEEQIDARPCMLSNVGIVLEQTGNITHLPGFEEGGFSVQDEHAQL 238 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L L++ V+D CAAPGGKTA + K+ ALD +RL +L N++RL L Sbjct: 239 CATLLPNLDDKVVVDACAAPGGKTAHILERYNPKKLIALDHDAKRLLRLSENIERLALDQ 298 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I+ DA + + D +++DAPCS+TG IRRHPD+ R + DI ++ Q+++L Sbjct: 299 TEVEIVTADATTWQAPEAVDCIVLDAPCSATGVIRRHPDIRLLRQSTDIAQTVALQQQIL 358 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 Q +K GG +++ CS+ K ++E+ + E+ I+ + Sbjct: 359 QQMWQQLKVGGTLLYITCSILKAENEQQMATFFAEHADAKEVK---------IEANWGIE 409 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P DGF+ + + Sbjct: 410 QTYGRQLLP--------TEHSGDGFYYCRIIKTA 435 >gi|114321773|ref|YP_743456.1| sun protein [Alkalilimnicola ehrlichii MLHE-1] gi|114228167|gb|ABI57966.1| 16S rRNA m(5)C-967 methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 437 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 131/451 (29%), Positives = 194/451 (43%), Gaps = 40/451 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + L V+ + SL L A + L RD L+ + LR+ R+ A Sbjct: 10 PVRQRAVQCLGQVLDQHQSLDQALPR-----AQQGLPPRDAALLAELCYGVLRWHDRLRA 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + +L L K LQ+LL + Q+L + +A V V A R + L+N Sbjct: 65 LAHRLLDKPLRGKDADLQRLLLCGLYQLLETRIPPHAAVAETVAVAPRLGKG-WARGLIN 123 Query: 126 SILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDL 180 ++LRR RE L A +P W + L + + + LA ++ P+ + + Sbjct: 124 AVLRRAQREADRLLPALDADPATRYALPAWLLDTLRRDWPDRWQALAAANQQRPPMTLRV 183 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIP 233 + ++ E L+ P P ++ LPGFA+G VQD +A Sbjct: 184 DLTRWSREEALQALDDAGCPAQPSPWTPTAVTLARPAAVDELPGFADGRLSVQDEAAQWA 243 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L VLD CAAPGGKT G ++TALD+S+ RL ++R NL RL A Sbjct: 244 APLLACRPGERVLDACAAPGGKTGHLLEHCPGIELTALDISEGRLGQVRANLQRLRREAR 303 Query: 292 DI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + + + + +L+DAPCS TG IRRHPD+ R DDI + A Q +LL Sbjct: 304 CLAGDAARPETWWDGRPYQRILLDAPCSGTGVIRRHPDIRHLRRPDDIARLADGQGRLLE 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + PGG +V++ CS+ K ++ VV LR+ P L P Sbjct: 364 ALWGLLAPGGRLVYATCSVLKAENSRVVAHFLRAHPEAQWL------------------P 405 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 GW P +I + GMDGF+ L R Sbjct: 406 AGWPPGFPADDGQILAGNGGMDGFYYACLHR 436 >gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii RHA1] gi|110823644|gb|ABG98928.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii RHA1] Length = 475 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 100/456 (21%), Positives = 163/456 (35%), Gaps = 39/456 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 RL + +L V + +L + R L RD L + R +DA Sbjct: 37 QPRLAARDVLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDA 93 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L +L++ Q+L VA +A V +V+ + + A VN Sbjct: 94 VIADCAGRPIAEIDGPLLDVLQLGAYQLLRTRVAPHAAVATSVDLVRAEAGP-GKAGFVN 152 Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--RVLAISDACI 173 ++LRRVS A P W + + G + + + A Sbjct: 153 AVLRRVSERSEAEWVERLAPADPVGRLAFEHAHPTWIAQVFADALGADAGELEDVLIADD 212 Query: 174 SPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + L + E A + + L EG+ VQD + Sbjct: 213 ARPVVHLVARPGEISSEELALATGGEVGRYSPYAVYLDGGDPGLLDAVREGLAGVQDEGS 272 Query: 231 SIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284 + + LDLCA PGGK A L +G + LD + + Sbjct: 273 QLVARALSLAPLDGPDAGRWLDLCAGPGGKAALLGALAGIEGGRLDAVEPVEHRADLIRK 332 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 D+ D D +D +LVDAPC+ G +RR P+ W R D+ A Q Sbjct: 333 TTKELPVDVHVADGRDPGLAGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVAGLAKLQ 392 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL + V+PGG+++++ CS ++ VV +R L L++ Sbjct: 393 RELLASAVELVRPGGVILYATCSPHLSETVAVVADAVRRYG----LTALDTRELVPGVPG 448 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +++ P G D F ALR+ Sbjct: 449 LGDGP--GVQLWPH--------RHGTDAMFMAALRK 474 >gi|327330430|gb|EGE72179.1| sun protein [Propionibacterium acnes HL097PA1] Length = 458 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 177/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V L + L+ RD +V+ T R Sbjct: 10 RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A TA+++ + R + + Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSFTAVELHEHRADLVSKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D PK+ F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG++ + CS + ++ +++ + P+ V P A +I Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 427 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 199/457 (43%), Gaps = 50/457 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +N R + +L+ ++ R +L+ L+ + +S + + I R Sbjct: 1 MK--VNDRFNALKILTALIESRKNLSYLMS-------PQEISP----MTKEICYGFCRHY 47 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 R+ ++ D ++ + + +L + + Q+ Y++ DYAVV V + K++ Sbjct: 48 FRLQSIADTLINKRPKDNELWI--VLLIGIYQLQYMNKPDYAVVKETVSLLGQVKKS-WA 104 Query: 121 AKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISPL 176 LVN++LR R K +L+++A + P W +RL+ + + + P Sbjct: 105 KGLVNAVLRNFCRRKDHILEKLAAEPVFIYGQPNWLLQRLQKDWPNDWQFIAAANDRHPP 164 Query: 177 Y-IDLTV-KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + + V K ++ + L + + +P +++LPGFA+G VQDA Sbjct: 165 MTLRVNVLKHSVDEYLDLLKKSGIEAFKHPVAPDGITLAIPCDVMTLPGFAQGSVSVQDA 224 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDR 285 + + L VLD C APGGKT ++ ALD+ +RL+++R NL+R Sbjct: 225 APQLAAYLLSLKPGQRVLDACCAPGGKTCHILEKEPGLASCVALDLDPQRLQRVRDNLNR 284 Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L A + ++ + FD +L+DAPCS+TG IRRH D+ R ++I + Sbjct: 285 LDLQATVVQGDVLEPRSWWDGHPFDRILLDAPCSATGVIRRHSDIKLLRTDEEISAISQV 344 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + PGG++V++ CS+ ++E + + + + Sbjct: 345 QSSMLNSLWPLLAPGGLMVYATCSIMSDENELQIAQFVAEH---------SDCQVSDGKW 395 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I P MDGFF LR+ Sbjct: 396 SWGRWTGHGQQILPG--------EHSMDGFFYSVLRK 424 >gi|311894797|dbj|BAJ27205.1| hypothetical protein KSE_13770 [Kitasatospora setae KM-6054] Length = 477 Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 101/471 (21%), Positives = 165/471 (35%), Gaps = 48/471 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+V+ L V + +L ++ + + +RD L +V TLR DA Sbjct: 21 PARIVAFRALRAVDERDAYANLILPSLLREAERKGMERRDAALATELVYGTLRGQGTYDA 80 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L + +L + Q+L + +A V VE A+ + AK VN Sbjct: 81 VIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSATVELARVVLGD-GRAKFVN 139 Query: 126 SILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER-------- 164 ++LR++S + + +A + P W L + G+ + Sbjct: 140 AVLRKISAQDLAGWVAQVAPPYEDDAEDHLAVVHSHPRWVVSSLWDALGRWQPAASGRQA 199 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFA 219 + + +A + + L + + A A+ G + Sbjct: 200 MEQLLEADNARPEVTLVARPGRSSVAELRAALPEVEDGRWSPYALRLTDGGDPAGVDAVR 259 Query: 220 EGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL----DV 271 E VQD + + LD CA PGGK A L A A + Sbjct: 260 ENRAGVQDEGSQLVALALANAPLDGPDRLWLDGCAGPGGKAALLGAVAAARGAALVASEK 319 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 + R + LD I + FD VLVD PCS G +RR P+ W Sbjct: 320 QQHRARLVARALDGNPGPYAVITADGTRGAWERGAFDRVLVDVPCSGLGALRRRPEARWR 379 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 R +DI QR+LL + + GG+V ++ CS ++ VV VL VE + Sbjct: 380 RRPEDIAGFGPLQRELLRSALDAARVGGVVGYATCSPHLAETRAVVDDVL-RGREDVEWI 438 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 D+ +++ P + G D + LRR Sbjct: 439 DARPLLPGVPDLGEGPD----VQLWPHL--------HGTDAMYLALLRRTA 477 >gi|77410664|ref|ZP_00787024.1| sun protein [Streptococcus agalactiae CJB111] gi|77163379|gb|EAO74330.1| sun protein [Streptococcus agalactiae CJB111] Length = 440 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L V K L+ S LS +D+ LV IV T+ ++ Sbjct: 9 ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + + LL +S+ Q+LYLD + D+A+V+ AV AK + KL+N Sbjct: 66 LSHFI-VDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLIN 124 Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176 ++LRRVS E +R + +P W ++L + YG+ R LAI ++ Sbjct: 125 AVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +T LN L + S F +G+ +QD S+ + Sbjct: 185 SLRVTDLSQKQTIKETLNVRDSHIAETALVADSGNFSSTSFFQDGLITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 N VLD C+APGGKT+ + ++ VTALD+ +LE + N RL L Sbjct: 245 LKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKT 304 Query: 294 IEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA +Y + FD +LVDAPCS G IRR PD+ + + D Q +L Sbjct: 305 KKLDASKAHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++ +V++K L + P N + + Sbjct: 365 VCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKR 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I I+P+ DGFF ++R+ Sbjct: 417 GCISISPEQY--------HTDGFFIGQVKRI 439 >gi|87303174|ref|ZP_01085972.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701] gi|87282341|gb|EAQ74301.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701] Length = 447 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 180/468 (38%), Gaps = 65/468 (13%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 G+ AR V+ +L V L+ E S L+ D+ L + +R + Sbjct: 10 GLEARRVAWRVLQAV-AAGAYTDLALERELRRSP---LAPADRGLATELACGAIRQRALL 65 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 D +D + S R+ L+ LL + + Q+L+ V A V VE AKRD R A Sbjct: 66 DGWIDALGKVSAERQPPPLRWLLHLGLYQLLFTARVPASAAVSTTVEIAKRDCLAR-LAP 124 Query: 123 LVNSILRRVSREKIELLQRIAGISIIP----------------EWFKERLENFYGKERVL 166 +VN +LR R + L A +P W L + E Sbjct: 125 VVNGLLRACLRRRQPLAPGAAPWEPLPLPSDPAASLALRGSLPPWLAAGLLEWLPPEGAE 184 Query: 167 AISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLP 216 A + A P +DL V E L A + + L + +LP Sbjct: 185 AFALAANQPPALDLRVNHLRASREGVIEALAAAGVSAEPLPDLPWGLSLGGRSGDLRALP 244 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 G+ EG W VQD +A + L +LD CAAPGGK+ L I V A+D S+ Sbjct: 245 GYDEGHWSVQDRTAQMIAPLLDPQPGERLLDACAAPGGKSTHLAELIGDAGTVVAVDRSE 304 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 RL +LR N RL L A + + DA FD +L+DAPCS GT+ RHPD W Sbjct: 305 GRLRRLRDNARRLGLNAIEPLTADAAITGAIGGPPFDRILLDAPCSGLGTLARHPDARWR 364 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 I QR LL + + P G +V++ C++ ++ ++ L Sbjct: 365 ITPASISDLVALQRSLLEAMLPLLVPAGRLVYATCTVHPSENSALIASFLAQHSGW---- 420 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 R+ ++ G DGF+A L+ Sbjct: 421 ----------------------RLL--SQQQHWPAPHGGDGFYAAVLQ 444 >gi|295130755|ref|YP_003581418.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK137] gi|291377004|gb|ADE00859.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK137] Length = 458 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V L + L+ RD +V+ T R Sbjct: 10 RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A +TA+++ + R + + Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D PK+ F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG++ + CS + ++ +++ + P+ V P A +I Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDTP---AMLPNI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|227875402|ref|ZP_03993543.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35243] gi|269977344|ref|ZP_06184317.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris 28-1] gi|307700926|ref|ZP_07637951.1| putative ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris FB024-16] gi|227843956|gb|EEJ54124.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35243] gi|269934647|gb|EEZ91208.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris 28-1] gi|307613921|gb|EFN93165.1| putative ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris FB024-16] Length = 485 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 107/471 (22%), Positives = 180/471 (38%), Gaps = 48/471 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + L V + +L E L++RD + TLR R DA Sbjct: 23 QPRDTAFWTLHRVAQDDAFANLVLPNEIERHH---LNRRDAAFATELAYGTLRLQGRYDA 79 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ ++ L + +LR+ ++L + V YA VD AV+ A+ A +VN Sbjct: 80 IIARLVDRDLGELDADVLTVLRLGCHELLGMRVESYAAVDSAVDLARDRIST-GPAGMVN 138 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169 ++LRRVS + + I A PEW L + E + + Sbjct: 139 AVLRRVSEKSLSEWLDIITENLSEEKALAVAFSYPEWMIWALRDSLVAAGRAAEELPGLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220 +A +P Y+ L + + T A + L Sbjct: 199 NAQNTPPYVALCARPSLCTADELATAAETYLDVDTRLGRLSPHAVVLSGGDPRRLRLVTR 258 Query: 221 GVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 G V+D + V++ + +DLCA PGGKTA V A +++ Sbjct: 259 GYAGVEDEGSQFLVEVLTAVEVPGVERTWVDLCAGPGGKTALLAALAKPKDVAVVANEIA 318 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLW 330 + R+E +R ++ + +I D ++ + D VLVDAPCS G +RR P+ W Sbjct: 319 EHRVELVRDSV-KALAGNVTVIRGDGREFGSRHPGKADRVLVDAPCSGLGALRRRPEARW 377 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 ++ D + + Q LL+ GI K GG+V ++ CS ++ +V VL+ L Sbjct: 378 RKNPADFSELSPLQADLLISGIEAAKAGGVVAYATCSPHLAETRALVNSVLQKRDDLEVL 437 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A ++D ++++ PD D F LR+ Sbjct: 438 DAVEIAKQVALDANHDFGSGPYLQLWPD--------RDHTDAMFLALLRKK 480 >gi|78049480|ref|YP_365655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037910|emb|CAJ25655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 436 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 125/453 (27%), Positives = 202/453 (44%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 7 TAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L L +LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 63 AYDVALRQWLERALPPRDAELKALLMVGFAQLDVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + A + P W +++L + + + + A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D + +L + + + + LPGFAEG VQD SA Sbjct: 179 QRSRTDPARYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + VLD CAAPGGK A G ++TALDV RRLE+++ L R A+ Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLTALDVDARRLERVQQTLQRTVPDAQ 298 Query: 292 DIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALQAADAADPDAWWDGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ +P + PL + + + Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTP-DAQAQPLGAQFGHAAGAG--- 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + DGFF L + Sbjct: 415 -------------RQRFPGEAHCDGFFYALLLK 434 >gi|22536500|ref|NP_687351.1| sun protein [Streptococcus agalactiae 2603V/R] gi|25010379|ref|NP_734774.1| sun protein [Streptococcus agalactiae NEM316] gi|76787603|ref|YP_329039.1| sun protein [Streptococcus agalactiae A909] gi|77404948|ref|ZP_00782049.1| sun protein [Streptococcus agalactiae H36B] gi|22533332|gb|AAM99223.1|AE014206_3 sun protein [Streptococcus agalactiae 2603V/R] gi|23094731|emb|CAD45950.1| unknown [Streptococcus agalactiae NEM316] gi|76562660|gb|ABA45244.1| sun protein [Streptococcus agalactiae A909] gi|77176387|gb|EAO79155.1| sun protein [Streptococcus agalactiae H36B] Length = 440 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 36/451 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L V K L+ S LS +D+ LV IV T+ ++ Sbjct: 9 ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + + LL +S+ Q+LYLD + D+A+V+ AV AK + KL+N Sbjct: 66 LSHFI-VDRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLIN 124 Query: 126 SILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--L 176 ++LRRVS E +R + +P W ++L + YG+ R LAI ++ Sbjct: 125 AVLRRVSSETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + +T +T LN L + S F +G+ +QD S+ + Sbjct: 185 SLRVTDLSQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 N VLD C+APGGKT+ + ++ VTALD+ +LE + N RL L Sbjct: 245 LKVSGNDQVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKT 304 Query: 294 IEMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++DA +Y + FD +LVDAPCS G IRR PD+ + + D Q +L Sbjct: 305 KKLDASKAHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSS 364 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ GGI+ +S C++ ++++ +V++K L + P N + + Sbjct: 365 VCQTLRKGGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKR 416 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G I I+P+ DGFF ++R+ Sbjct: 417 GCISISPEQY--------HTDGFFIGQVKRI 439 >gi|306832887|ref|ZP_07466020.1| ribosomal RNA small subunit methyltransferase B [Streptococcus bovis ATCC 700338] gi|304424962|gb|EFM28095.1| ribosomal RNA small subunit methyltransferase B [Streptococcus bovis ATCC 700338] Length = 440 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 116/452 (25%), Positives = 195/452 (43%), Gaps = 36/452 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V L+ E + LS +D+ LV IV T+ ++ Sbjct: 8 QARGLALLVLENVFEDGAYSNIALNQELSHT---TLSPKDKPLVTEIVYGTVARKITLEW 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + + LL +S+ Q+LYLD + +AVV+ AV AK + K V Sbjct: 65 YLAHYI-KDRDKLDFWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123 Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175 N++LRR +R + + +P W ++L + +G+ER +AI + + Sbjct: 124 NAVLRRFTEEELPNPETIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAVAIMQSLFVRNK 183 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 I +T + A + L + FA G +QD S+ + Sbjct: 184 ASIRVTNLDKLAEIKAATGAEQSILSPVGLVKTSGHFAGTDYFANGNITIQDESSQLVAP 243 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292 N +LD CAAPGGKT + + +TALD+ +L + N RLH+ Sbjct: 244 TLNIQGNEDILDACAAPGGKTTHMASYLKEGHITALDLYDHKLTLVMDNAKRLHVADKIS 303 Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +MD ++ FD +LVDAPCS G IRR PD+ + ++ D Q ++L Sbjct: 304 TQKMDATTVHEHFAPDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILD 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++ GGI+ +S C++ +++ +V+ K L + P N K + Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I ITP+ + DGFF ++R+ Sbjct: 416 DGCITITPEQYQ--------TDGFFIGQVKRI 439 >gi|50842676|ref|YP_055903.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202] gi|289428602|ref|ZP_06430286.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J165] gi|50840278|gb|AAT82945.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202] gi|289158296|gb|EFD06515.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes J165] gi|313764281|gb|EFS35645.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL013PA1] gi|313772001|gb|EFS37967.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL074PA1] gi|313802083|gb|EFS43317.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA2] gi|313807694|gb|EFS46181.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL087PA2] gi|313810201|gb|EFS47922.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL083PA1] gi|313812771|gb|EFS50485.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL025PA1] gi|313816188|gb|EFS53902.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL059PA1] gi|313818731|gb|EFS56445.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL046PA2] gi|313820501|gb|EFS58215.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL036PA1] gi|313822693|gb|EFS60407.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL036PA2] gi|313825373|gb|EFS63087.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL063PA1] gi|313827669|gb|EFS65383.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL063PA2] gi|313830532|gb|EFS68246.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL007PA1] gi|313833568|gb|EFS71282.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL056PA1] gi|313838904|gb|EFS76618.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL086PA1] gi|314915270|gb|EFS79101.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA4] gi|314918180|gb|EFS82011.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL050PA1] gi|314920256|gb|EFS84087.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL050PA3] gi|314925043|gb|EFS88874.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL036PA3] gi|314931779|gb|EFS95610.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL067PA1] gi|314955581|gb|EFS99982.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL027PA1] gi|314958076|gb|EFT02179.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL002PA1] gi|314960353|gb|EFT04455.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL002PA2] gi|314962623|gb|EFT06723.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL082PA1] gi|314967512|gb|EFT11611.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL037PA1] gi|314973532|gb|EFT17628.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL053PA1] gi|314976212|gb|EFT20307.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL045PA1] gi|314978627|gb|EFT22721.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL072PA2] gi|314983766|gb|EFT27858.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA1] gi|314989757|gb|EFT33848.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA3] gi|315077839|gb|EFT49890.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL053PA2] gi|315080464|gb|EFT52440.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL078PA1] gi|315084135|gb|EFT56111.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL027PA2] gi|315085478|gb|EFT57454.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL002PA3] gi|315088465|gb|EFT60441.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL072PA1] gi|315096079|gb|EFT68055.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL038PA1] gi|315098708|gb|EFT70684.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL059PA2] gi|315101523|gb|EFT73499.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL046PA1] gi|315105750|gb|EFT77726.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL030PA1] gi|315108670|gb|EFT80646.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL030PA2] gi|327326359|gb|EGE68149.1| sun protein [Propionibacterium acnes HL096PA2] gi|327331766|gb|EGE73503.1| sun protein [Propionibacterium acnes HL096PA3] gi|327443543|gb|EGE90197.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL013PA2] gi|327445747|gb|EGE92401.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL043PA2] gi|327448270|gb|EGE94924.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL043PA1] gi|327450608|gb|EGE97262.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL087PA3] gi|327454053|gb|EGF00708.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL083PA2] gi|328753311|gb|EGF66927.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL025PA2] gi|328754026|gb|EGF67642.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL087PA1] gi|328754754|gb|EGF68370.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL020PA1] gi|328760679|gb|EGF74245.1| sun protein [Propionibacterium acnes HL099PA1] gi|332675599|gb|AEE72415.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes 266] Length = 458 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V L + L+ RD +V+ T R Sbjct: 10 RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A +TA+++ + R + + Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D PK+ F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG++ + CS + ++ +++ + P+ V P A +I Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|289425301|ref|ZP_06427078.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK187] gi|289154279|gb|EFD02967.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes SK187] Length = 458 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V L + L+ RD +V+ T R Sbjct: 10 RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGIVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A +TA+++ + R + + Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D PK+ F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG++ + CS + ++ +++ + P+ V P A +I Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|297559831|ref|YP_003678805.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844279|gb|ADH66299.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 489 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 106/469 (22%), Positives = 177/469 (37%), Gaps = 46/469 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 AR V+ +L V ++ LL + R +S RD L + TLR Sbjct: 32 PRDPARRVAYDVLRAVGQRDAYANLLLPALLSE---RGISGRDAALATELTYGTLRLQGT 88 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 DA+L+ + +L LLR+ Q+L + +A V V+ A+R + H + Sbjct: 89 YDAILEACVDRTLASVDTEALPLLRLGAHQLLSTKIPPHAAVSATVDLARRVVGH-HRGR 147 Query: 123 LVNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERL------ENFYGKE 163 VN++LR+VS ++ ++ + P W + L + G Sbjct: 148 FVNAVLRKVSARDLDAWTAVVAPDRATDPSGYLSVVHSHPRWMVKELARALGERSANGLV 207 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEG 221 + A + L K T A + A ++ + Sbjct: 208 ETERLLAAHNERPRVTLVAKPGRATVADLVAAGAEEARYSPFAAYLPEGDPAAIREVHQN 267 Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273 VQD ++ ++ ++ LD+CA PGGK + A++ A +V Sbjct: 268 RAAVQDEASQLVALALTRVDAHGDDARWLDMCAGPGGKAGLLASLAGQRDARLLAAEVQP 327 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + + R A ++ D FD VLVDAPC+ G +RR P+ W R Sbjct: 328 ARAGLVAGAVRRSPRDAGRVVVADGTRPAWRPGAFDRVLVDAPCTGLGALRRRPESRWRR 387 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + A Q LL + V+ GG+V + CS +++ +V++VL L Sbjct: 388 TEGSAAELAPLQHDLLTSAVEAVRLGGVVAYVTCSPHLDETDGIVRRVLSERDD---LTL 444 Query: 393 LNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L +A + +A PEG +++ P + G D F LRR Sbjct: 445 LRAADYLDGVPDLAAGPEGRYVQFWPHV--------HGTDAMFLALLRR 485 >gi|306818715|ref|ZP_07452437.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35239] gi|304648401|gb|EFM45704.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus mulieris ATCC 35239] Length = 485 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 107/471 (22%), Positives = 180/471 (38%), Gaps = 48/471 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + L V + +L E L++RD + TLR R DA Sbjct: 23 QPRDTAFWTLHRVAQDDAFANLVLPNEIERHH---LNRRDAAFATELAYGTLRLQGRYDA 79 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ ++ L + +LR+ ++L + V YA VD AV+ A+ A +VN Sbjct: 80 IIARLVDRDLGELDADVLTVLRLGCHELLGMRVESYAAVDSAVDLARDRIST-GPAGMVN 138 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAIS 169 ++LRRVS + + I A PEW L + E + + Sbjct: 139 AVLRRVSEKSLSEWLDIITENLSEEKALAVAFSYPEWMIWALRDSLVAAGRAAEELPGLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAE 220 +A +P Y+ L + + T A + L Sbjct: 199 NAQNTPPYVALCARPSLCTADELATAAETYLDVDTRLGRLSPHAVVLSGGDPRRLRLVTR 258 Query: 221 GVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 G V+D + V++ + +DLCA PGGKTA V A +++ Sbjct: 259 GYAGVEDEGSQFLVEVLTAVEVPGVERTWVDLCAGPGGKTALLAALAKPKDVAVVANEIA 318 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLW 330 + R+E +R ++ + +I D ++ + D VLVDAPCS G +RR P+ W Sbjct: 319 EHRVELVRDSV-KALAGNVTVIRGDGREFGSRHPGKADRVLVDAPCSGLGALRRRPEARW 377 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 ++ D + + Q LL+ GI K GG+V ++ CS ++ +V VL+ L Sbjct: 378 RKNPADFSELSPLQADLLISGIEAAKAGGVVAYATCSPHLAETRALVNSVLQKRDDLEVL 437 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A ++D ++++ PD D F LR+ Sbjct: 438 DAVEIAKQVALDANHDFGSGSYLQLWPD--------RDHTDAMFLALLRKK 480 >gi|126643464|ref|YP_001086448.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 405 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 110/421 (26%), Positives = 197/421 (46%), Gaps = 34/421 (8%) Query: 35 DSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL 94 ++ +++RD+ L +V TLR + ++ +L L +++ L V + Q+L Sbjct: 6 NTQLNQVAERDRALFHELVLGTLRQWFALKSISLPLLSKPLN--NETVETCLYVGLYQVL 63 Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 +A +A + V+ A + + +VN+ILRR +RE + Q + +P W + Sbjct: 64 CTRIAAHAAISETVD-ATKQLGFPALSGIVNAILRRATRETEDFEQGLQQAHGLPSWLFK 122 Query: 155 RLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPTGGI------RL 205 RL+ +G E+ A+ + + L V + + KL ++ + + Sbjct: 123 RLKKDWG-EQTEALCQSLKQVAPLTLRVNQRHIGRDAYLAKLQSLDIQARACLFSEAGIV 181 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSG 263 E I LPGF +G + VQD A + L LNN +V+D CAAPGGKTA Sbjct: 182 LEQSVQITQLPGFEQGWFSVQDEHAQLCATLLPDLNNKTVIDACAAPGGKTAHLLEKFKP 241 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 A++ A+D RL ++ NL+RL L +I+ DA + P + D +++DAPCS+TG Sbjct: 242 AQLIAIDQDPSRLVRVTENLNRLALDQSHTEILAADATKWNPVQPVDCIVLDAPCSATGV 301 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 IRRHPD+ R + DI ++ Q+++L +K GG +++ CS+ K ++E+ + Sbjct: 302 IRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCSILKSENEQQMINFF 361 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 P E+ I+ + ++ P+ DGF+ ++++ Sbjct: 362 TEHPDAKEVK---------IEADWGIEQVHGRQLLPEAQSG--------DGFYYCKIQKI 404 Query: 442 I 442 Sbjct: 405 A 405 >gi|306830710|ref|ZP_07463875.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427218|gb|EFM30325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 440 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 193/452 (42%), Gaps = 36/452 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V L+ E + LS +D+ LV IV T+ ++ Sbjct: 8 QARGLALLVLENVFEDGAYSNIALNQELSHT---TLSPKDKSLVTEIVYGTVARKITLEW 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + LL +S+ Q+LYLD + +AVV+ AV AK + K V Sbjct: 65 YLAHYI-KDRDKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123 Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175 N++LRR +R + + +P W ++L + +G+ER AI + + Sbjct: 124 NAVLRRFTKEELPNPETIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAAAIMQSLFVRNK 183 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 I +T + A + L + FA G +QD S+ + Sbjct: 184 ASIRVTDPDKLAEIKAATGAEQSILSPVGLVKTSGHFAGTDYFANGDITIQDESSQLVAP 243 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292 N +LD CAAPGGKT + + +TALD+ +L + N RLH+ Sbjct: 244 TLDIQGNEDILDACAAPGGKTTHMASYLKKGHITALDLYDHKLTLVMDNAKRLHVADKIS 303 Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +MD ++ FD +LVDAPCS G IRR PDV + ++ D Q ++L Sbjct: 304 TQKMDATTVHEHFAPDSFDKILVDAPCSGIGLIRRKPDVKYNKENQDFSALQEIQLQILD 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++ GGI+ +S C++ +++ +V+ K L + P N K + Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I ITP+ + DGFF ++R+ Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439 >gi|283457829|ref|YP_003362427.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18] gi|283133842|dbj|BAI64607.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18] Length = 697 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 103/506 (20%), Positives = 175/506 (34%), Gaps = 84/506 (16%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +L V +L L RD + TLR DA+ Sbjct: 203 ARATVFEVLRSVAESDAYANLVLPKAIRSHR---LDHRDAGFATELTYGTLRHQGTYDAI 259 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + L + + +LR+ V Q+L + V +A ++ +V A+ A +N+ Sbjct: 260 LRHCVDRPLEKVGTTTLIVLRMGVHQLLNMRVPAHAALNQSVSLAREKIG-AGPASFINA 318 Query: 127 ILRRVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKE-----RVLAIS 169 +LRRVS E R+A ++ P W + + + Sbjct: 319 VLRRVSERTPEEWYELIIKDAKDDTERMALLASHPAWIVRSMRQALVAHGRPASEIEQLL 378 Query: 170 DACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 +A ++L + + + AV + L EG QD Sbjct: 379 EADNLAPVVNLVALPGLGSLDEAREQGAVDGELVEGSALYTSGDLARLESVREGTVRAQD 438 Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279 A + + + + + LDLCA PGGK A I GA + A + + R + + Sbjct: 439 AGSQLVARALAAAPLDGTDTAWLDLCAGPGGKAALLGALGIQRGASLVANEAAPHRAQLV 498 Query: 280 RCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIRR 324 ++ L + ++ D P +LFD V+VD PCS G +RR Sbjct: 499 ESSMRPLPEDSYTVLTGDGRQIRETLRKNASDLPESIEPGQLFDRVMVDVPCSGLGALRR 558 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P+ W + DI + QR+LL I +PGG++ + CS +++ +V +VL S Sbjct: 559 RPEARWRKSPRDIAELLPLQRQLLDAAIEATRPGGVIAYVTCSPHAAETQNIVAEVLESG 618 Query: 385 PIPV-------------------ELVPLNSAYWKSIDMAMALSPEG-----------WIR 414 + + E V + + +G + Sbjct: 619 AVSLLDSAAALREVALHTEGANGEPVSVLAGEKDPGHTPEIKVKKGAPVVKASENPTTAQ 678 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + G D F LR+ Sbjct: 679 LWPHV--------HGTDAMFLALLRK 696 >gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia mucilaginosa ATCC 25296] gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia mucilaginosa ATCC 25296] Length = 659 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 101/506 (19%), Positives = 175/506 (34%), Gaps = 84/506 (16%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +L V +L L RD + TLR DA+ Sbjct: 165 ARATVFDVLRSVAESDAYANLVLPKAIRSHR---LDHRDAGFATELTYGTLRHQGTYDAI 221 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + + + + +LR+ V Q+L + V +A ++ +V A+ A +N+ Sbjct: 222 LSRCVDRPIEKVGTTTLIVLRMGVHQLLNMRVPAHAALNQSVSLAREKIG-AGPASFINA 280 Query: 127 ILRRVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKE-----RVLAIS 169 +LRRVS E R+A ++ P W + + + Sbjct: 281 VLRRVSERTPEEWYELIIEDAKDDTERMALLASHPGWIVRSMRQALVAHGRPASEIEQLL 340 Query: 170 DACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 +A ++L + + + A+ + L EG QD Sbjct: 341 EADNLAPVVNLVALPGLGSLEEAREQGAIDGELVEGSALYASGDLARLESVHEGTVRAQD 400 Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKL 279 A + + + + + LDLCA PGGK A I GA + A + + R + + Sbjct: 401 AGSQLVARALAAAPLDGTDTAWLDLCAGPGGKAALLGALGIQRGASLVANEAAPHRAQLV 460 Query: 280 RCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIRR 324 ++ L + ++ D P +LFD V+VD PCS G +RR Sbjct: 461 ESSMRPLPEDSYTVLTGDGRQIRETLRKNASDLPGSIEPGQLFDRVMVDVPCSGLGALRR 520 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P+ W + DI + QR+LL I +PGG++ + CS +++ +V +VL S Sbjct: 521 RPEARWRKSPRDIAELLPLQRQLLDAAIEATRPGGVIAYVTCSPHAAETQNIVAEVLESG 580 Query: 385 PIPV-------------------ELVPLNSAYWKSIDMAMALSPEG-----------WIR 414 + + E V + + +G + Sbjct: 581 AVSLLDSAAALREVALHTEGANGEPVSVLAGEKDPGHTPEIKVKKGAPVVKASENPTTAQ 640 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + G D F LR+ Sbjct: 641 LWPHV--------HGTDAMFLALLRK 658 >gi|297571430|ref|YP_003697204.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296931777|gb|ADH92585.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 484 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 96/481 (19%), Positives = 184/481 (38%), Gaps = 61/481 (12%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 ARLV +L V L E + L+++D + TLR L R DA+ Sbjct: 19 ARLVVFDVLMAVEEDGAYANLALPREIRRAR---LNKQDASYATNLCYGTLRLLGRWDAI 75 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + +++ LLR+ Q+L L +A ++ V A R++ ++ A +N Sbjct: 76 LAHCTNGRPIAELDTAVKVLLRMGAHQLLELKTPPHAAINETVVIA-RNELSQGIAGFIN 134 Query: 126 SILRRVSREKIELLQRI---------------AGISIIPEWFKERLENF-----YGKERV 165 ++LRRVS Q+ + P+W L+ + + Sbjct: 135 AVLRRVSERTTAQWQQQLKEDAGGKVNSVAFLSTWYSHPQWVVRALDKALQYHGREHKDI 194 Query: 166 LAISDACISPLYIDLTVK-FDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFA 219 L + + +P + L + + + + + L + + Sbjct: 195 LHVLRSDNTPASVSLVARGISVADLREDIRRGHMHSEEGELVDSAVLLHGGDPSRVFAIK 254 Query: 220 EGVWWVQDASASIPVQLFGTLNNLS----VLDLCAAPGGKT----AQLIVSGAKVTALDV 271 + + VQD + + + + LD+CA PGGKT + G+++ A ++ Sbjct: 255 DRLAGVQDEGSQLVARTLAAAQLETDDDLWLDMCAGPGGKTATLASIADQRGSRIHANEL 314 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIR 323 RLE + ++ D+ E D D+ P + +L+DAPC+ G +R Sbjct: 315 HPHRLELVLDSIQPW-ADIVDVREGDGRDFGDSTQEGVIPPNGYARILIDAPCTGIGALR 373 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R P+ W ++ D + A Q +LL G + ++PGG++ +S CS ++ E++ + Sbjct: 374 RRPEARWRKEAGDALDLAKLQAELLEAGWNALRPGGVLGYSTCSPYLAETSEIINAFVEK 433 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 P + L A + G +++ PD+ D + + + Sbjct: 434 HPEAIRLN--TPAIASTQARVDIAGENGELQLWPDL--------HNSDAMYLAL---ISK 480 Query: 444 P 444 P Sbjct: 481 P 481 >gi|298346829|ref|YP_003719516.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298236890|gb|ADI68022.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 470 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 103/465 (22%), Positives = 176/465 (37%), Gaps = 47/465 (10%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 V + +L + L +RD +V TLR R DA++ + + Sbjct: 2 RRVDQDHAYANLVLPGLIERAR---LHRRDAAFATELVYGTLRLQGRYDAIIGLLSDRDI 58 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 L +LR+ + QIL + V DYA VD V+ A RD+ + A +VN++LR+V+ Sbjct: 59 AALDSELVTVLRMGIHQILQMRVEDYAAVDTMVDLA-RDRLSAGPAGMVNAVLRKVTEHD 117 Query: 136 IELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAISDACISPLYID 179 + + PEW L + + + A P Y+ Sbjct: 118 LSYWLDAITSGLTGEKALSRAFSYPEWIVWALRDALVATGRDAGELPGLLHAQNRPAYVT 177 Query: 180 LTVKFDIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASA 230 L + + + A + L G+ V+D + Sbjct: 178 LCARPGLISADELATAAETYLDADTRLGELSDCAVVLSGGDPRRLRAVERGLAGVEDEGS 237 Query: 231 SIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + ++ + +DLCA PGGKTA V A +VS R E +R + Sbjct: 238 QLVAKVLAAAPVTGVERTWVDLCAGPGGKTALLAGLARSRDVSVIANEVSPHRAELVRDS 297 Query: 283 LDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +++ D D+ D VLVDAPCS G++RR P+ W + D+ Sbjct: 298 TKAFTDQIVQVLQGDGRDFGGLHPGKADRVLVDAPCSGLGSLRRRPEARWNKSATDLKDL 357 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q+ LL + VKPGG+V ++ CS ++ +VV+ +++ L A Sbjct: 358 TALQQDLLRSALETVKPGGVVGYATCSPHLAETRQVVETTVKNRADLRVLDAPAVAREII 417 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 ++ L P ++++ PD G D F +++ + Sbjct: 418 VNSEHDLGPGPYLQLWPD--------RDGTDAMFLALIQKKSPTE 454 >gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus marinus str. MIT 9202] gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus marinus str. MIT 9202] Length = 438 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 106/413 (25%), Positives = 176/413 (42%), Gaps = 33/413 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G R + +L V L+ + F L D + + +R+ Sbjct: 1 MSIGYLQRKAAWEILLKV-SSGDFSDHALEKVLKNYQFNPL---DIAFITELSFGCIRYR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D D + ++ L+ LL + + Q+L +D + A + VE AK+ N Sbjct: 57 KFLDLWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFSAAISTTVEVAKKTDLN-G 115 Query: 120 FAKLVNSILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISD 170 A VN+ILR SR+ + + I+ + P W + L + G I Sbjct: 116 LAGTVNAILRNASRKLEQKIFPELSSDRKERISYLESFPLWLVKDLYKWVGNSEGENIIK 175 Query: 171 ACISPLYIDLTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAE 220 A IDL + + L + GI LK P SI +LPG+++ Sbjct: 176 AFNKKPSIDLRINQLKTNLDNFLKVLHKNNIDAEIIKDLHNGITLKSNPRSIKNLPGYSD 235 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLE 277 G+W +QD S+ L +LD CAAPG K+ L + A+D S +RL+ Sbjct: 236 GLWTIQDRSSQWIAPLLNPKEGEKILDACAAPGSKSTHLAELTNDSAEILAVDRSAKRLK 295 Query: 278 KLRCNLDRLHLYAEDIIEMDAF-----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ NL+RL+L + + ++ DA + FD +L+DAPCS GT+ R+PD W+ Sbjct: 296 ILQSNLERLNLKSVNTLKTDATSLIELNPNFISYFDKILIDAPCSGIGTLSRNPDSRWSL 355 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 + I Q KLL +K G +V+S C++ D+ ++++ + + Sbjct: 356 SKEKIKSLTLLQEKLLESIFPLLKKDGTLVYSTCTICPDDNNLLIKRFIEKNK 408 >gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR51-B] gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma proteobacterium NOR51-B] Length = 416 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 105/435 (24%), Positives = 179/435 (41%), Gaps = 38/435 (8%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 SL +L + + LV +V TLR P ++ + +L L +K Sbjct: 3 NGRSLAAVLPSHL-----ASVDSGQRPLVMELVYSTLREWPLLEGISRQLLRKPLRKKDA 57 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140 + L+ + + Q+ +A +A V V + ++N LVN +LR R+ EL+ Sbjct: 58 DVHALVLLGLQQLRGTRIAHHAAVSETVAVCRELRKN-WATGLVNGVLRTYQRQTAELID 116 Query: 141 R--IAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK-FDIETWAHKLNAV 196 A + +PEW ++L + + + P + + + E + +L+A Sbjct: 117 NLSPAEKAALPEWMYQQLAKEWPHHLTKIAAASSSRPPMSLRINTRLCSPEEYKQRLHAE 176 Query: 197 MLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + L + S+PGF G VQD SA + L +VLD CA Sbjct: 177 GIAFSADGLSNTAVTLARPIDVESVPGFTAGQISVQDVSAQLAAILLDAKPGETVLDACA 236 Query: 251 APGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK 305 APGGK+ + ++ A D+ +RLEK+ N DRL L + D Sbjct: 237 APGGKSCHIAERQPELKTLIAADIDAKRLEKVIANRDRLGLGFDCIAMDAAHPGDELGVG 296 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FDA++ D PCS+TG +RR+PD+ R DI A Q + +KPGG +++ Sbjct: 297 RFDAIVADVPCSATGVLRRNPDIKIHRGKTDIRHFAQQQTDITHGLWPLLKPGGRLLYVT 356 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ + +++ V+ L + D + ++ E ++ P Sbjct: 357 CSILRAENDAQVEAFLEHHEDAAV---------EPFDTEVGIATEYGQQVLP-------- 399 Query: 426 VSSGMDGFFAVALRR 440 + G DG + +RR Sbjct: 400 AAEGGDGLYFSLIRR 414 >gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC 17982] gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC 17982] Length = 490 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 93/475 (19%), Positives = 171/475 (36%), Gaps = 45/475 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V + +L + S RD +V+ TLR + R+D Sbjct: 19 PRRIAYDVLHEVETQGAFTNIILPKALRQARRDGHFSDRDAAFTSELVHGTLRAIGRLDW 78 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-------- 117 V+ + L +LR+ Q+L + V D+A V V+ A+ + Sbjct: 79 VISRHIDRPLADLDPRALVVLRMGAHQLLDMRVPDHAAVSATVDVAREHLTDGPVRFVNA 138 Query: 118 --RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170 R + S + Q + P W + Y ++ +L + Sbjct: 139 VLRSITREDPSEREAAMDAIADEDQALGVRYSHPAWMVTAFRDALKAHGYPEDELLDVLV 198 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAEG 221 A + L + + + + + LP +G Sbjct: 199 ADNEVPTVTLVARPSLMSVDELADEAEDILDTRVALGAVSPYAVLLESGDPARLPSIRDG 258 Query: 222 VWWVQDASASIPVQLFGTL-----NNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVS 272 QD + + + + N+ LDLCA P GA+VTA +V Sbjct: 259 RAGAQDEGSQLAALIAASAPLEGDNDERWLDLCAGPGGKAALLAGLAAGVGARVTANEVH 318 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDY------CPKKLFDAVLVDAPCSSTGTIRRHP 326 R + + +++ D + FD V+VDAPCS G++RR P Sbjct: 319 PHRARLVERTT--RQFDSIEVVSGDGRTFGGGQSAWRLGSFDRVVVDAPCSGMGSMRRRP 376 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + W R D+ + QR+LL + ++ +PGG++ + CS ++ E V+++L++ Sbjct: 377 ESRWNRTPADVEELTVLQRELLDRAVALTRPGGVLTYITCSPHAAETREQVERLLKA--G 434 Query: 387 PVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VEL+ + + A+ + G I+ ++ G D F LR+ Sbjct: 435 EVELLDTVALANECAPQALDVPASAGVIKGFSGRTLQLWDHRFGTDLMFVACLRK 489 >gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326198900|gb|EGD56082.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 480 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 107/458 (23%), Positives = 168/458 (36%), Gaps = 36/458 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+V+ +L V + LL + R +S RD L + T R + +DA Sbjct: 35 PARIVARDVLRAVRERDAYANLLLPKLLRE---RKISGRDAGLATELTYGTARSMGFLDA 91 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L +LR+ Q+L + +A V +V+ A+ + + VN Sbjct: 92 VISAAAGRPAAEIDGPLLDVLRLGAYQLLRTRIGSHAAVSTSVDIARSENGM-GPSGFVN 150 Query: 126 SILRRVSREKIELLQRI-------------AGISIIPEWFKERLENFYGKE--RVLAISD 170 ++LR+VS+ +L A P W E + + A Sbjct: 151 AVLRKVSQRDEQLWIDELAPSMMDDRIGNLAFTYAHPRWIGEVFYEALDRSTGELQAALA 210 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 A + L + E A + L EG VQD Sbjct: 211 ADDERPIVHLVARPGQITAEELALISGGEEGRYSPYCVYLPEGDPGQLDAVREGFAGVQD 270 Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCN 282 + + + LDLCA PGGK A L A D + + + Sbjct: 271 EGSQLVAIALTRADVGADTGRWLDLCAGPGGKAALLGSLADVEGAHVDAVEISDHRAKLI 330 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + D+ D + FD VLVDAPCS G++RR P+ W R +D+ Sbjct: 331 EKVVDGLPVDVRVADGRASGLEPGFDRVLVDAPCSGLGSLRRRPEARWRRRPEDVPALVE 390 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q++LL + + V+PGG+VV+S CS + ++ EVV VL + V + Sbjct: 391 LQKQLLAEALRLVRPGGVVVYSTCSPHRAETVEVVDAVLSE-VSGITRVDARPLVAGDVF 449 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A +L P +++ P D F ALR+ Sbjct: 450 DADSLGPGPHVQLWPH--------RQDTDAMFLAALRK 479 >gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein [Spiroplasma citri] Length = 423 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 184/457 (40%), Gaps = 52/457 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M AR V+ ++L + K LL + +D+ L+ IV TL+ ++ Sbjct: 1 MQAREVAWNILWKIFAKNKFSNHLLSNIVEQN--DNFIDQDKTLIYRIVYGTLKNKLYLE 58 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 + + + S + LQ LL +S+ Q +LD + +YA+V+ AV +K + +A Sbjct: 59 YIANQFIES--KKTNQKLQILLWMSIYQFRFLDRIPNYAIVNEAVNISKSV--SPKYAGF 114 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+ L+++ K E+ + + P L N Y ++ + ++ Sbjct: 115 INTTLKKIFDSKDEIFEINIADETKKLSIKYSFPSSLYLILRNEYSEDIARQVMIDSLTI 174 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASA 230 + V + L+ L +V+ F +G+ ++QD + Sbjct: 175 PKLSFRVNTLKISRDELLSKYSNYNLTKSLVSSVGVIADKPVVNSEMFKKGLIFIQDEMS 234 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 ++ VLD+C+APGGK +I + + A D+S++++ ++ N RL Sbjct: 235 MRIAEILDPQETDRVLDMCSAPGGKATHLSQIINNKGIIDAYDISEKKINLIKMNASRLG 294 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRK 346 + +DA + +D +L DAPCS G I+R P++ + ++ Q + Sbjct: 295 ITNIYPHLLDARKINSEIQYDKILCDAPCSGLGVIKRKPEIKYHTLTNQELANLVEIQEQ 354 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + +KPGGI+V+S C+ ++ ++ L + Sbjct: 355 LLEKAYQLLKPGGILVYSTCTFGGYENIVQIRNFLAKHSDLKIIT--------------- 399 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E+I G + DGF+ +R+ + Sbjct: 400 -------------TEQIFGYENNTDGFYYCKIRKKDK 423 >gi|21244523|ref|NP_644105.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306] gi|46396950|sp|Q8PG22|RSMB_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|21110194|gb|AAM38641.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306] Length = 436 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 124/453 (27%), Positives = 201/453 (44%), Gaps = 39/453 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +G+ +RL ++ +L+ V + SL L RD+ LV AI +R P Sbjct: 7 TAGVASRLAAARVLTAVFDQGRSLKAELAATLPGIG----DPRDRALVEAICFAVIRRRP 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + L L +LP + L+ LL V AQ+ L + +A + V+ + R A Sbjct: 63 AYEVALRQWLERALPPRDAELKALLMVGFAQLEVLQLPAHAALSATVDACRALGRPRQ-A 121 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDL 180 +VN+ILRR RE + A + P W +++L + + + + A ++P+++ + Sbjct: 122 GMVNAILRRAQREGFPAV---ADDAGWPSWLRKQLRADWGDRAEAIFTASAQMAPMWLRV 178 Query: 181 TV-KFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIP 233 + D T+ +L + + + + LPGFAEG VQD SA Sbjct: 179 QRSRTDPATYVARLAELDIVAHTDAVLPDAVRLHNAVPVSQLPGFAEGDVSVQDGSAQQV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR----LH 287 + VLD CAAPGGK A G ++ ALDV RRLE+++ L R Sbjct: 239 ADALTLAPSARVLDACAAPGGKAAHLLERHPGLQLVALDVDARRLERVQQTLQRTVPNAL 298 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + D + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +L Sbjct: 299 VALQAADAADTDAWWDGRPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIEALCALQARL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++PGG ++++ CSL ++++ V+ L+ +P A +++ Sbjct: 359 LDATWRTLRPGGQLLYTTCSLLARENQAQVEAFLQRTPD---------ARAQTLGAQFGH 409 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P DGFF L + Sbjct: 410 AAGAGRQRFPG--------EQHCDGFFYALLLK 434 >gi|312864944|ref|ZP_07725174.1| ribosomal RNA small subunit methyltransferase B [Streptococcus downei F0415] gi|311099564|gb|EFQ57778.1| ribosomal RNA small subunit methyltransferase B [Streptococcus downei F0415] Length = 439 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 115/459 (25%), Positives = 203/459 (44%), Gaps = 39/459 (8%) Query: 1 MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + + +AR ++ +L V ++ L S LSQ+D+ LV +V T+ Sbjct: 1 MANRLEKSARGLALKILEEVFQEGAYSNLALKRGLSGS---SLSQQDKALVTELVYGTVA 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 ++ L V+ + + + LL +S+ Q+LYLD + +AV++ AVE AK + Sbjct: 58 RKITLEWQLAHVIE-DRDKLESWVYTLLMLSLYQLLYLDKIPSHAVLNEAVELAKS-RSQ 115 Query: 118 RHFAKLVNSILRR-------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 R KLVN++LR+ +R + +P W ++ + YG ER + I + Sbjct: 116 RGADKLVNAVLRKLSKGPLADPASIKRQNKRYSVQYSLPVWLVKKTIDQYGHERAIKIFE 175 Query: 171 AC--ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + +T + A + L + F +G +QD Sbjct: 176 SLFVRNKASVRVTNPAKLAEIQATTGAERSLLSPVGLVKESGYFAGTKYFEDGDLTIQDE 235 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 S+ + VLD CAAPGGKTA ++ +V ALD+ +L+ ++ N RL Sbjct: 236 SSQLVAPTLKLQGQEQVLDACAAPGGKTAHLASYLTSGQVLALDLYDHKLDLIKENARRL 295 Query: 287 HLYA-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 H+ ++D FD +LVDAPCS G IRR PD+ + + + D Sbjct: 296 HVADRVRTKKLDARLVHQEFAPDSFDKILVDAPCSGIGLIRRKPDIKYKKASQDFESLQK 355 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L ++ GI+ +S C++ ++++++++QK L + P N K Sbjct: 356 IQFDILKSVCQTLRKNGIITYSTCTIFREENQDLIQKFLEAHP--------NFEQVKLEH 407 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +I+ITP++ DGFF L+R+ Sbjct: 408 RQEDILTDEFIQITPEL--------HLTDGFFIAQLKRV 438 >gi|169629894|ref|YP_001703543.1| Fmu protein (SUN protein) [Mycobacterium abscessus ATCC 19977] gi|169241861|emb|CAM62889.1| Probable Fmu protein (SUN protein) [Mycobacterium abscessus] Length = 471 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 103/460 (22%), Positives = 169/460 (36%), Gaps = 45/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + +L V R+ L + R ++ RD + T R +DA Sbjct: 30 PPRQAALDVLRAVSRQDAYANLALPALLRE---RGITGRDAAFATELTYGTCRARGLLDA 86 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ ++ + L+ LR+ Q+L V +A + V+ A + ++ A VN Sbjct: 87 VIEAAAGRTIDQVDEGLRDPLRLGAYQLLRTRVEPHAALSTTVD-AVAVEFDQGRAGFVN 145 Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE--RVLAISDA 171 ++LR +SR A + P W + + G + + + Sbjct: 146 AVLRTISRRDEADWVEELAPPESDRIGRLAFATAHPRWIAQSFSDALGPAGSELAQVLAS 205 Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L + E A + + + L +G+ VQD Sbjct: 206 DDERPLVHLAARPGRIDAEALAEAVGGTVGRYSPFAVYLPGGDPGRLEPVRDGLAQVQDE 265 Query: 229 SASIPVQLFGTLN----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLR 280 + + + + LDLCA PGGKTA GA VTA++V+ R E + Sbjct: 266 GSQLIARATALAPLQGADEQWLDLCAGPGGKTALLGALAAQRGAHVTAVEVAPHRAELVA 325 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 L + D+ FD VLVDAPC+ G +RR P+ W R DI + Sbjct: 326 NATKSLPVTVVTADGRDSDLAA--ASFDRVLVDAPCTGLGALRRRPEARWRRQPGDIPEL 383 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QR+LL I +PGG++V+S CS ++ VV +R + E Sbjct: 384 VKLQRELLASAIQLTRPGGVIVYSTCSPHLAETVGVVSDAVRRYAVSAEDARAVFPGVAG 443 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A A +++ P G D F LR+ Sbjct: 444 LGDADA------VQLWPH--------RHGTDAMFTALLRK 469 >gi|224826197|ref|ZP_03699300.1| sun protein [Lutiella nitroferrum 2002] gi|224601834|gb|EEG08014.1| sun protein [Lutiella nitroferrum 2002] Length = 416 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 117/445 (26%), Positives = 183/445 (41%), Gaps = 48/445 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L+++ LL V +LT L + L+ ++ ++ I LR L VL Sbjct: 6 LLAAGLLEKVE-GGRTLTEALADAQRQAP--DLTPAERGALQDIGYGVLRHLAEWRRVLR 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L LP L+++L V++ Q+ Y A YAVV+ AV A R R F LVN++L Sbjct: 63 QLLPKPLPE--PQLERVLIVALHQLEYTRAAQYAVVNEAVTLAGRLARGR-FKGLVNAVL 119 Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAI-SDACISPLYIDLTVK 183 R R++ EL +A P W+ + L Y ++ + D P+ + + + Sbjct: 120 RNYLRQRDELKAAVAADDEARYNHPRWWIKALRRHYPQDWQAILDMDNQHPPMTLRVNRR 179 Query: 184 F-DIETWAHKLNAVMLPTGG----IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + + +L + P + LPGFA+G VQD A Sbjct: 180 HVEPAAYLQRLRDAGIEAECLGEEAIQLARPVGVRELPGFADGDVSVQDQGAQQAAYRLD 239 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295 + L VLD CAAPGGKT ++ ALDV + RL ++ NL RL L A Sbjct: 240 LRDGLRVLDACAAPGGKTCHMLELADLDVTALDVDETRLGRVADNLARLQLSARLVAADA 299 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D + FD +L D PCS++G +RRHPD+ W R D + A Q L+ + Sbjct: 300 GDTASWWDGVPFDRILADVPCSASGVVRRHPDIKWLRRPGDFAELARQQSALVDALWPLL 359 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 GG ++++ CS+ +++ E + L V L ++ Sbjct: 360 ASGGKMLYATCSIFPEENREQLAAFLARHADAVCLDDQ--------------------QL 399 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P DGF+ L + Sbjct: 400 LPSEQ---------HDGFYYALLAK 415 >gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera sp. 301] gi|297256756|gb|ADI28601.1| sun protein [Methylotenera sp. 301] Length = 439 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 187/452 (41%), Gaps = 39/452 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++++ ++ V+ L L + F + + + + + TLRF IDA L Sbjct: 6 QIAANAVNQVLSGH---NLTLALPAALAVFPSATPQQRGAAQDLSYGTLRFYGEIDAYLV 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA---KRDKENRHFAKLVN 125 +L L + LL V++ Q+L+ + VV+ AV KR LVN Sbjct: 63 QLLEKPLT--DDRINALLLVAIYQLLHDKADSFTVVNQAVHAVSQLKRPAPKSWAKGLVN 120 Query: 126 SILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY---- 177 +ILR R+K +L + P+W+ +L+ Y + P Sbjct: 121 AILRNFLRQKAQLAAKLKSSDVAVYSYPQWWVSKLKVQYPNHWQGMLETGNQHPPMTLRV 180 Query: 178 --IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 ++++ ++ + + P + +PGF++G+ VQD A + Sbjct: 181 NTQKISMQDYLQLLTRQDIEAKHIGAQALILANPVPVEKIPGFSDGIVSVQDLGAQLAAY 240 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY-AEDI 293 L ++VLD C APGGKT ++ ALD + RL++++ NL R+ L + Sbjct: 241 LLEAKVGMNVLDACCAPGGKTGHILELADVALTALDSDEVRLQRVQSNLSRMKLKANLLV 300 Query: 294 IEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D+ FD +L D PCS++G +RRH D+ W R DI Q K+L Sbjct: 301 GDASMTDWWSDAKTAPQLFDRILADVPCSASGIVRRHVDIKWLRREADIASFTRQQAKIL 360 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + GG +++ CS+ ++++ V L+++ +L + + ++ Sbjct: 361 ANLWQMLAKGGKLLYVTCSVFNEENQGQVDNFLQNNADATQLPFALPDNYAAAEITQING 420 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P ++ DGFF L++ Sbjct: 421 -----QLIP---------TNAHDGFFYALLQK 438 >gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 420 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 108/453 (23%), Positives = 195/453 (43%), Gaps = 53/453 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V K +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQQLAAESIAAV-AKGRNLQDVLAAI--RAAHPELTAQELGALQDIAYGCQRYLGSLKYM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ + A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLNHTRNAPHAVVNEAVENIAKIGRGQYRS-FANA 119 Query: 127 ILRRV----SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR + + + P W+ + + Y K I A + L + Sbjct: 120 ILRRFLREKEQLNAQCRRDDTAKYNFPGWWLDYMRQAYPKHW-HNIVTAANGHPPLTLRI 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E + KL A + + + + LPGF++G+ VQD A Sbjct: 179 NRRHGNAEGYLEKLAAEGIAGKVLDEYAVILDEAVPVNRLPGFSDGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + + +LD CAAPGGK+ ++ + +TALD+ + RL+++ NL RL + Sbjct: 239 ILKPADGERILDACAAPGGKSGHILELANCSLTALDIDEGRLKRVADNLSRLGFQTASLH 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + FDAVL D PC+++G +R+PD+ W R D K+A Q +L Sbjct: 299 RADAADLSSWYDGNPFDAVLADVPCTASGVTKRNPDIKWLRRPADGGKTARQQETMLDNL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 S +KPGG ++ + CSL ++++ +Q+ LR P Sbjct: 359 WSVLKPGGRMLLATCSLFHEENDGQLQRFLRRHPDAACTES------------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + + P + DGF+ +R+ QP Sbjct: 400 -LTLLPKHTQ---------DGFYYALIRK--QP 420 >gi|258541970|ref|YP_003187403.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-01] gi|256633048|dbj|BAH99023.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-01] gi|256636105|dbj|BAI02074.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-03] gi|256639160|dbj|BAI05122.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-07] gi|256642214|dbj|BAI08169.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-22] gi|256645269|dbj|BAI11217.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-26] gi|256648324|dbj|BAI14265.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-32] gi|256651377|dbj|BAI17311.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654368|dbj|BAI20295.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-12] Length = 440 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 131/436 (30%), Positives = 203/436 (46%), Gaps = 22/436 (5%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V+ R L L + + A TLR + + Sbjct: 25 PTRDIAFDILCGVVEHRRMLENSLSRSAEAHKAEPRDRAAAHRLAA---ATLRHMGTLRT 81 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL+ L P ++ L + AQ+L+L+ +A V V +R K FA L N Sbjct: 82 VLEPFLRKEPPE---PVRVALMIGCAQLLFLETPPHAAVGTTVSLLRRRKL-APFAGLAN 137 Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LR+V+ E +L+ + IP W AI++ +D+T++ Sbjct: 138 AVLRKVAAEGQNVLEGLDQARLNIPAWLWSSWSVLGRG-VPRAIAEGISHEAPLDITLRP 196 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A ++ G + L G+ EG +WVQDA+A++P +L Sbjct: 197 G----ATAPEGGIVLPNGSVRYPAGTRVADLAGYEEGAFWVQDAAATLPARLLNVKEGEK 252 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 V DLCAAPGGKTAQL V+GA+V A++ + R+ +L+ NL RL L ++ DA + P Sbjct: 253 VADLCAAPGGKTAQLAVTGAQVAAIENNPNRMARLKENLARLGLGNVITLQADAGTWQPD 312 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 DA+L+DAPCS+TGT RRHPDVLW + D+ Q +LL + ++PGG +V++ Sbjct: 313 APLDAILLDAPCSATGTARRHPDVLWVKRPRDLTTLTAGQDRLLEAAKNMLRPGGRLVYA 372 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL +++ + + + LVP + + A +PEGW+R P M Sbjct: 373 VCSLQQEEGPDRARAA-----EAMGLVPDPFTPEELAFLPEARTPEGWLRTHPGMWAD-- 425 Query: 425 GVSSGMDGFFAVALRR 440 MDGFFA R Sbjct: 426 --KGSMDGFFAARFIR 439 >gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136] Length = 414 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 109/443 (24%), Positives = 183/443 (41%), Gaps = 42/443 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +N+R ++ +L R I L++ L RD L++ +V TLR + +D Sbjct: 6 LNSRQLALQILVEWERSEIYAADLIEKAAATHR---LDHRDTALLQTLVMGTLRNIDLLD 62 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ V + + S+ LLR+ +AQ+L L++ +AVV+ V QA + + + L Sbjct: 63 IWLERVCDN--QHLETSVHWLLRLGIAQLLLLEMPAHAVVNETVNQAGKARGLVNAV-LR 119 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 R+ IA + P W ER +GK A+ + P + V Sbjct: 120 RVDRERIPLLARMDRLPIAERTSHPSWLAERWTKQFGKSAAEALCEWDQQPASTYVRVNQ 179 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + L +++ A G + QD S I L + Sbjct: 180 LHPQPLTPEEVLPLEPISFPGFFRADTLPR-EWLASGRCYAQDPSTVIACDLLAPQPGET 238 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--- 298 +LD CAAPGGK+A + + ++ D RRL++++ NL+RL++ + ++D Sbjct: 239 ILDACAAPGGKSAYLAQKMQNQGRILTCDSVPRRLQRMQQNLERLNVTIAENRQVDWTKP 298 Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D +L+DAPCS+TG +RR DV W D + V+ A Q K+L +K Sbjct: 299 LPPIWKGVQVDRILLDAPCSNTGVMRRRVDVRWRLDPEVFVEMAQLQTKILSTLSPLLKS 358 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CSLD++++E+++ L + P + Sbjct: 359 GGSLVYSTCSLDREENEDIIASFLVAHPEFKLVE-------------------------- 392 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 G DG FA L + Sbjct: 393 --TRSSLPWRDGFDGAFAALLLK 413 >gi|68536089|ref|YP_250794.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium jeikeium K411] gi|68263688|emb|CAI37176.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium jeikeium K411] Length = 506 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 102/471 (21%), Positives = 171/471 (36%), Gaps = 49/471 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 SG R V +L V L + + RD + TLR Sbjct: 41 SGDKVRDVVFGVLRDVTVDGAFGNLALPKALRE---AGIKGRDAAFATELTYGTLRARGL 97 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA+++ + + LR+ QIL V ++A V+ +VE K + + Sbjct: 98 LDAIIEDAAGRKIEKIDSVALDALRLGAYQILRTRVENHAAVNTSVELVKAFGAGQ-ASG 156 Query: 123 LVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--------R 164 VN +LR ++R+K E A + PEW E + + Sbjct: 157 FVNGVLRALARKKPETWIERVAPGDSLADLALRNAHPEWIAEVFADALSVDPATDAGRAE 216 Query: 165 VLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + A + + L + E A + + + EG Sbjct: 217 LKRTLAADDARPIVHLAGRPGQISGEELALITGGTEGKFSPYAVYLDEGAPGEIAPVREG 276 Query: 222 VWWVQDASASIPVQLFG-----TLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRR 275 + VQD + + LDLCA PGGKTA + A D + Sbjct: 277 MASVQDEGSQLIGLATTRVPVAADLPARWLDLCAGPGGKTAFIASVAMSEQATVDAIEIA 336 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 + + + D P+ F VL+DAPCS G +RR P+ Sbjct: 337 DHRAKLIEQTTRDLPVCVHVGDGRKLEAIGDLDAPEGGFARVLIDAPCSGLGALRRRPEA 396 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 WT+D D+ QR+LL+ G++ PGG+V++S CS +++ EVV+ V + Sbjct: 397 RWTKDPQDVAPLVTLQRELLVSGLAATAPGGVVIYSTCSPHPKETSEVVRSVAARTG--A 454 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 E++ + + + +A + ++++ P + G D F ALR Sbjct: 455 EILDVTELLPELAETNIAQTA-PFVQLWPHI--------HGTDAMFFAALR 496 >gi|326773324|ref|ZP_08232607.1| ribosomal RNA small subunit methyltransferase B [Actinomyces viscosus C505] gi|326636554|gb|EGE37457.1| ribosomal RNA small subunit methyltransferase B [Actinomyces viscosus C505] Length = 515 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 107/476 (22%), Positives = 178/476 (37%), Gaps = 54/476 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L+ V R LL L +RD A+ TLR R DA+ Sbjct: 50 ARQVALEVLTRVRRDDAFANLLLPELLE---TADLDRRDAGFATALTYGTLRLRGRYDAM 106 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L R ++ +LR+ Q++ + VA +A V V+ A R A VN+ Sbjct: 107 IAACTDRPLERIDPAVLDVLRLGAHQLMGMRVAQHAAVSTTVDLATTSCG-RGAATFVNA 165 Query: 127 ILRRVSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAIS 169 ++RR+S ++ A PEW + L E + + Sbjct: 166 VMRRLSGRDLDSWMDELRRDAPDETSALARTQSHPEWIVKALRQALVTHGRSGEELEVLL 225 Query: 170 DACISPLYIDLTVKFDI------------ETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 A + + L + + AH + + + + + Sbjct: 226 AADNADPEVALCARPGLIAPEALAKAARKADRAHDVEPRPGRISPLAVVMVGGDPGRIEA 285 Query: 218 FAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTAL 269 + V+D + + + LDLCA PGGK A+ +GA++ A Sbjct: 286 IRDCRAGVEDEGSQLVALVAAHAPVEGRDARWLDLCAGPGGKAALLAARAAQTGAQLLAN 345 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +VS R + +R L + + D D +D VLVDAPC+ G++RR P+ Sbjct: 346 EVSPHRADLVRSALRAIAPDVARVRCGDGRDLGRDEPGAYDRVLVDAPCTGLGSLRRRPE 405 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSS 384 W R D+ A QR+LL + V+ GG+V + CS ++ VV+ ++L Sbjct: 406 ARWRRQPQDVTVLAELQRELLASALRAVRRGGVVTYVTCSPHALETTLVVRDVTRLLERE 465 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E + + A S +++ P + G D F LRR Sbjct: 466 GLHTEPLHAGDVATRLAPQPPAGSDRETLQLWPHL--------DGTDAMFCALLRR 513 >gi|77464685|ref|YP_354189.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1] gi|77389103|gb|ABA80288.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1] Length = 421 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 124/439 (28%), Positives = 198/439 (45%), Gaps = 33/439 (7%) Query: 4 GMN--ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 GM AR ++ LL V+ + L+ L +A ++ + + + LR L Sbjct: 13 GMADEARGMAVTLLDAVLGEGKLLSQALADLPAAAAPAERARAQR-----LASSVLRHLG 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +L L + P +++ +LR++ ++ A + VV AV+ A+R + +H A Sbjct: 68 PADRLLAPHLRKAPP---LTVRNILRLATVEMAADGAAPHGVVSSAVDLARRGRRTQHLA 124 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 LVN++LRR++ L +P W ++ L +G+ V AI +P +DLT Sbjct: 125 GLVNAVLRRIAPASFAGLP----AQHLPMWLRQPLVRRWGRAVVTAIEAVQAAPPPLDLT 180 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + + L P + +LPG+ G WWV DA+A++ V L Sbjct: 181 ARPGLSAPGEPLPTGSFRL------RAPGQVSALPGYEAGQWWVHDAAAALAVNLLDPHA 234 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +V DLCAAPGGKT QL GA+ A R + R A ++ Sbjct: 235 GEAVADLCAAPGGKTLQLAAGGARHGA--RHFRGPPRAAPRESRADGPAGRVV--GRSPD 290 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 F+A+L+DAPCS+TGTIRRHPD+ + +D ++ Q +L + + PGG + Sbjct: 291 WQGGPFEAILLDAPCSATGTIRRHPDLPFVKDGSELPSLVALQAAMLDHALGLLAPGGRL 350 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VF CSL +++ E + +L P P + EG +R+ PD+ Sbjct: 351 VFCTCSLLEEEGEAQLAALLERHPELTVERPTLPGV-----EPDWIGAEGGLRLRPDLWA 405 Query: 422 KIDGVSSGMDGFFAVALRR 440 + GMDGFF +RR Sbjct: 406 EA----GGMDGFFMARVRR 420 >gi|329114269|ref|ZP_08243031.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter pomorum DM001] gi|326696345|gb|EGE48024.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter pomorum DM001] Length = 462 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 130/436 (29%), Positives = 200/436 (45%), Gaps = 22/436 (5%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L V+ R L L + + A TLR L + Sbjct: 47 PTRDIAFDILCGVVEHRRMLENSLSRSAEAHKAEPRDRAAAHRLAA---ATLRHLGTLRT 103 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL+ L P ++ L + AQ+L+L+ +A V V +R K FA L N Sbjct: 104 VLEPFLRKEPPE---PVRVALMIGCAQLLFLETPPHAAVGTTVSLLRRRKL-APFAGLAN 159 Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LR+V+ E +L+ + IP W AI++ +D+T++ Sbjct: 160 AVLRKVAAEGQNVLEGLDQARLNIPAWLWSSWSVLGRG-VPRAIAEGISHEAPLDITMRP 218 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A ++ G + L G+ EG +WVQDA+A+ P +L Sbjct: 219 G----ATAPEGGIVLPNGSVRYPAGTRVAELAGYEEGAFWVQDAAATFPARLLNVQAGEK 274 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 V DLCAAPGGKTAQL +GA V+A++ + R+ +L+ NL RL ++ DA + P Sbjct: 275 VADLCAAPGGKTAQLAATGAHVSAIENNPNRMARLKENLARLGFTNVTTLQADAGTWQPD 334 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 DA+L+DAPCS+TGT RRHPDVLW + D+ Q +LL + ++PGG +V++ Sbjct: 335 APLDAILLDAPCSATGTARRHPDVLWVKRPRDLTTLTAGQDRLLEAAKNMLRPGGRLVYA 394 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL +++ + + + LVP + + A +PEGW+R P M Sbjct: 395 VCSLQQEEGPDRARAA-----EAMGLVPDPFTPEELAFLPEARTPEGWLRTHPGMWAD-- 447 Query: 425 GVSSGMDGFFAVALRR 440 MDGFFA R Sbjct: 448 --KGSMDGFFAARFTR 461 >gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472] gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472] Length = 416 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 111/446 (24%), Positives = 182/446 (40%), Gaps = 50/446 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ +L+ + +LT L + L+ ++ ++ + +LR L + L Sbjct: 6 QLAAEILARIEA-GTTLTDALADVQRQAG--KLTPAERGALQDLSYGSLRHLGVLRHCLR 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++ LP +++LL +++ Q+ Y A YAVV AV A + F LVN +L Sbjct: 63 QLVPHPLPE--PQVERLLLIALYQLQYTRAAQYAVVHEAVTLAGMMARGK-FKALVNGVL 119 Query: 129 RRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 R R + ELL A + P+W+ RL+ Y E AI +A + L V Sbjct: 120 RNFQRRRDELLANAAADEVAQANHPDWWVARLKEAYPAEW-RAILEASNVHPPLTLRVNR 178 Query: 185 DI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 A G P ++ LPGFAEG+ VQD A Sbjct: 179 RRISVDDYLRRLEEAGLAAKALGGDAVQLARPVAVRDLPGFAEGLASVQDEGAQRAAYWL 238 Query: 238 GTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDII 294 + VLD CAAPGGKT + ++ +VTALD+ RL ++ NL RL L A + Sbjct: 239 DLKPGMRVLDACAAPGGKTGHMLEMADVEVTALDIDNARLARVGDNLRRLGLSAQLIEAD 298 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 ++ + FD +L D PCS++G +RRHPD+ W R D Q + Sbjct: 299 ASRPDEWWGGRPFDRILADVPCSASGVVRRHPDIKWLRRPGDFAALGEQQAGMADALWPL 358 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 + G ++++ CS+ +++ ++ L+ P L + Sbjct: 359 LASRGKMLYATCSIFPEENRLQLEGFLKRHPDASCLKEE--------------------Q 398 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P DGF+ L + Sbjct: 399 LLPCER---------HDGFYYALLEK 415 >gi|329117416|ref|ZP_08246133.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parauberis NCFD 2020] gi|326907821|gb|EGE54735.1| ribosomal RNA small subunit methyltransferase B [Streptococcus parauberis NCFD 2020] Length = 440 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 121/450 (26%), Positives = 201/450 (44%), Gaps = 34/450 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + +L + L+ + + A LS +D+ L+ IV TL ++ Sbjct: 9 ARGKALIVLEDIFENDAYSNLALNNQLTNIA---LSSKDKGLITEIVYGTLSRKMTLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + +K+ LL + V +A+V+ AV AK R K VN+ Sbjct: 66 LAHFIEDRDKIEKWVYYLLLLSLYQLLYLDKVPAHAIVNDAVNIAKNRGNKRGAEKYVNA 125 Query: 127 ILRRVSREKIEL-------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LY 177 ILR +S K+ +R + +P W +++ + +G+ER + I ++ +P Sbjct: 126 ILRLLSENKMPDIENIKRKNKRYSVKYSMPTWMVKKMIDQFGEERAVKIMESLFTPSKAS 185 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 I +T I+ +L A + L + S FAEG VQD S+ + Sbjct: 186 IRVTDDVSIDQLQEELEADKSVLSPVGLTKSSGHFASSQAFAEGKVTVQDESSQLVAPTL 245 Query: 238 GTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDII 294 + ++LD C+APGGK + ++ KVTALD+ +LE + N RL L D Sbjct: 246 EIKQDDNILDACSAPGGKAVHMASYLTSGKVTALDIYDHKLELVVENAKRLGLSERIDTQ 305 Query: 295 EMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 +D ++ P FD +LVDAPCS G IRR PD+ +++D D+ Q ++L Sbjct: 306 VLDARKVHEFFPADSFDKILVDAPCSGIGLIRRKPDIKYSKDLTDLEALQAIQLEILASV 365 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 V+ GGI+ +S C++ +++ +V++K L+S N K + +G Sbjct: 366 CQTVRKGGIITYSTCTIFDEENFQVIEKFLQSHS--------NFEQVKLNHTQADIVKDG 417 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I ITP+ + DGFF +RR+ Sbjct: 418 CIVITPEQYQ--------TDGFFIGQVRRV 439 >gi|318057055|ref|ZP_07975778.1| RNA-binding Sun protein [Streptomyces sp. SA3_actG] Length = 481 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 162/468 (34%), Gaps = 44/468 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L ++ + RD L +V TLR D Sbjct: 27 PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 86 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V VE A+ + ++ V Sbjct: 87 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 145 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169 N++LRR+SR ++ + ++ + P W L + G R + + Sbjct: 146 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 205 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 A + L + L+A+ ++P +G Sbjct: 206 TADNERPEVTLVARPGRTDAEALLDALGEERALPGRWSPYAVRLTEGGEPGAVPAVRDGE 265 Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKR 274 VQD + + + LD CA P GA++ A + Sbjct: 266 AGVQDEGSQLVALALAKAPVEGRDALWLDACAGPGGKAALLAGLAAQRGARLVAAEKQPH 325 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + + FD VLVD PC+ G +RR P+ W R Sbjct: 326 RAGLVARALAGTPGPYQVVTADGTRPPWRPGTFDRVLVDVPCTGLGALRRRPEARWRRRP 385 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 +D+ A QR LL + + V+ GG+V ++ CS ++ VV +L EL+ Sbjct: 386 EDLDSFAPLQRALLHEALRSVRVGGVVGYATCSPHLAETRAVVADILDEWGGDAELLDAP 445 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + +++ P + G D + LRR Sbjct: 446 ALLPEVPLTGEGPD----LQLWPHV--------HGTDAMYLALLRRTA 481 >gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 368 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 170/379 (44%), Gaps = 34/379 (8%) Query: 86 LRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIE 137 LR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE + Sbjct: 2 LRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKD 60 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--- 194 ++R+A P W + + YG E + + + P V D T + Sbjct: 61 PVERLAIAMSHPVWLVQEWTSAYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLA 120 Query: 195 -----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 A ++ ++ F +G +QD S+ + + +VLD C Sbjct: 121 SEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNEGETVLDSC 180 Query: 250 AAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCP 303 AAPGGKT + KV +LD+ ++ ++ +RL L + +D ++ Sbjct: 181 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFS 240 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD +LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+ Sbjct: 241 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVY 300 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+++K ++E+V+ K L+ P E + + + EG ++I P Sbjct: 301 STCTIEKIENEQVIDKFLKEHP---EFEWDTTIKERMPEKLSKYINEGQVQILPHYFA-- 355 Query: 424 DGVSSGMDGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 356 ------TDGFYIACLRKKV 368 >gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1] gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1] Length = 416 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 93/449 (20%), Positives = 190/449 (42%), Gaps = 52/449 (11%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L +++ L L + + + +S+ + + +V T++ + ++ +L Sbjct: 3 RQFALDILLKYKQEKSYLNLSLHACFQN---QQISREQKDFITRVVYGTVQNMLYLEYLL 59 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L R K + LL +S+ Q ++D + DYA+V+ AV + K+ A+ +N+ Sbjct: 60 EPHLK---TRVKAYEKMLLLMSLYQHEFMDSIPDYAIVNEAVRL-AKKKKGTKTAQFINA 115 Query: 127 ILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 +L + + +R++ + P W + L YG+E I A Y Sbjct: 116 VLNHAFHQHRSLDELDDEKERLSIETSHPLWLVKMLSKQYGEEETRKICYADNEVPYKSA 175 Query: 181 TVKFDIETWAHKLNAVMLPTGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 V L M G L +I + + EG+ +QD S+ + +L Sbjct: 176 RVNTLKTKKESLLKDDMWSEGQLSPDCLYYQRGNIANTKYYQEGLVTIQDESSQMVARLL 235 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + +LD+C APGGKT+ L + + ++ A D+ + ++ ++ + RL + + Sbjct: 236 NPQPHEYILDMCCAPGGKTSHLAALMKNQGRIDAYDLYEHKIPLVKEQMQRLGVDIVHVQ 295 Query: 295 EMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D+ P FD +L+DAPCS G + R P++ + D+D + + Q+KLL Sbjct: 296 AYDSTHLIELYPADTFDRILLDAPCSGLGVLARKPEIKYH-DSDSMDEIIQIQQKLLENA 354 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG +V+S C+++K+++ + ++ +++ ++ Sbjct: 355 YFLLKNGGRIVYSTCTINKKENGKQIETFIKNHSDMKKIEET------------------ 396 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I DGF+ L + Sbjct: 397 ----------TILPYQYHSDGFYMCLLEK 415 >gi|314987947|gb|EFT32038.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL005PA2] Length = 458 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 178/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V L + L+ RD +V+ T R Sbjct: 10 RKADPARRLAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVQKLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A +TA+++ + R + + Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D PK+ F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG++ + CS + ++ +++ + P+ V P A +I Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus sp. SIP3-4] gi|253984579|gb|ACT49436.1| sun protein [Methylovorus sp. SIP3-4] Length = 427 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 107/448 (23%), Positives = 193/448 (43%), Gaps = 39/448 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ + V+ +L LD + S R L+ + + + + + LR ++ A+ Sbjct: 4 AQQLAAEAVHQVL-TGRNLGVTLDAMF--SRQRSLTPQQRGMTQDLSYGCLRQYGQLQAL 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L+ +L L + L+ LL V++ Q+ A + +VD AV QA + L N+ Sbjct: 61 LNQLLQKPL--QDERLRCLLLVAIYQLQQARAASHTIVDQAV-QASAQFKKPWVKGLTNA 117 Query: 127 ILRRVSREKIELLQRIAG-----ISIIPEWFKERLENFYGKER-VLAISDACISPLYIDL 180 +LR R++ L++ I P+W+ +L + Y +E + ++ P+ + + Sbjct: 118 VLRNFLRQQDVLVKNIDPTDDVARYSYPQWWVNKLRHQYPQEWKAMLLAGNQHPPMTLRV 177 Query: 181 TVKF-DIETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +E ++ +L A G P + +PGF EG VQDA A Sbjct: 178 NRRHLSVEAYSQQLADAGIAASELGGSAVTLTQPIPVERIPGFLEGDVSVQDAGAQWAAP 237 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 L + VLD C APGGKT ++ + + A+D RL + NL RL L A Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 DA + + FD +L D PC+++G +RRH D+ W R D+ Q +L Q Sbjct: 298 GDAADASGWWDGRPFDRILADVPCTASGIVRRHVDIKWLRREADVASFVRQQALILPQLW 357 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + GG ++++ CS+ +++++ + + L+ +L A Sbjct: 358 QCLAKGGKLLYATCSVFHEENQQQIDRFLQQHADAKQLPLSQDAS--------------- 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFF L++ Sbjct: 403 ----PHARHGQFYPCAAHDGFFYALLQK 426 >gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 423 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 94/454 (20%), Positives = 190/454 (41%), Gaps = 53/454 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN+R ++ +L V + LL+ + L+Q+ + + +V+ + +D Sbjct: 1 MNSRYIAFDILKKVFVNKAYSNVLLNKISK----KDLNQQTKDFIFNLVHGVISNKIHLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L ++ + + LQ +L +S+ Q++YL+ + +YA+V+ +V K ++ A Sbjct: 57 YLLTKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 112 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+IL + R K L+ + L Y K+ V I Sbjct: 113 INAILNKFLRFKDTYLEINLDNKDLELCILHSFSYELYLMLIKQYDKDIVNQIVVNNHQI 172 Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + T N ++ T ++I++ + G +QD ++ Sbjct: 173 PKLYIRLNTLKITSDQLFNKYKDIYLLKKTNVNDCLIANKTIINSNLYKNGFITIQDKAS 232 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + Q+ N VLD+C+APGGK L + + + ++++ +++ ++ N++RL+ Sbjct: 233 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIIGNEINESKIKLIKENINRLN 292 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + MDA K+ FD VL+DAPCS G +R P++ D + Q +L Sbjct: 293 CLNISLTNMDARKIKQKEEFDYVLLDAPCSGFGVFKRKPEIKLRFDQVQVNSIINLQEEL 352 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K G +V+S C++++ +++ + K L V+L Sbjct: 353 LESAYYNLKNNGEMVYSTCTINQDENQNQITKFLNRHEDMVKL----------------- 395 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I G DGF+ L++L Sbjct: 396 -----------YEKQIFGFEENTDGFYICKLKKL 418 >gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 432 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 94/454 (20%), Positives = 190/454 (41%), Gaps = 53/454 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN+R ++ +L V + LL+ + L+Q+ + + +V+ + +D Sbjct: 10 MNSRYIAFDILKKVFVNKAYSNVLLNKISK----KDLNQQTKDFIFNLVHGVISNKIHLD 65 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 +L ++ + + LQ +L +S+ Q++YL+ + +YA+V+ +V K ++ A Sbjct: 66 YLLTKLID--VKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT--SQKQANF 121 Query: 124 VNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N+IL + R K L+ + L Y K+ V I Sbjct: 122 INAILNKFLRFKDTYLEINLDNKDLELCILHSFSYELYLMLIKQYDKDIVNQIVVNNHQI 181 Query: 176 LYIDLTVKFDIETWAHKLNA-----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + T N ++ T ++I++ + G +QD ++ Sbjct: 182 PKLYIRLNTLKITSDQLFNKYKDIYLLKKTNVNDCLIANKTIINSNLYKNGFITIQDKAS 241 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + Q+ N VLD+C+APGGK L + + + ++++ +++ ++ N++RL+ Sbjct: 242 ILVSQILNPSLNTKVLDMCSAPGGKLTHLSMILKNTGNIIGNEINESKIKLIKENINRLN 301 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + MDA K+ FD VL+DAPCS G +R P++ D + Q +L Sbjct: 302 CLNISLTNMDARKIKQKEEFDYVLLDAPCSGFGVFKRKPEIKLRFDQVQVNSIINLQEEL 361 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +K G +V+S C++++ +++ + K L V+L Sbjct: 362 LESAYYNLKNNGEMVYSTCTINQDENQNQITKFLNRHEDMVKL----------------- 404 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I G DGF+ L++L Sbjct: 405 -----------YEKQIFGFEENTDGFYICKLKKL 427 >gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331] Length = 477 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 102/467 (21%), Positives = 171/467 (36%), Gaps = 43/467 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R ++ +L V + +L + + RD L +V TLR D Sbjct: 20 PVRFLAFEVLRAVDERDAYANLVLPPLLKKARAKGDFEGRDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + V Q+L + +A V +VE A+ AK V Sbjct: 80 AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+VS ++ + ++ + P W L + G R + Sbjct: 139 NAVLRKVSAHDLDGWVERVAPSWDEDAEEHLSVVHSHPRWVVSALWDALGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 +A + L + T L+A+ +G +L +G Sbjct: 199 EADNERPEVTLVARPGRSTTDELLDALGEESGLPGRWSPYAVRMAEGGEPGALAAVRDGS 258 Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKV----TALDVSKR 274 VQD + + + LD CA PGGK A L A A + Sbjct: 259 AGVQDEGSQLVAAALAAAPVEGTDTRWLDGCAGPGGKAALLAALAAGRGATLLAAEKQPH 318 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + I FD VL+D PCS G +RR P+ W R Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWQPGSFDRVLMDVPCSGLGALRRRPESRWRRRP 378 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393 +D+ A QR LL + + V+ GG+V ++ CS ++ VV+ VL+ VE + Sbjct: 379 EDLESFAPLQRGLLREALKAVRIGGVVGYATCSPHLAETRVVVEDVLKGRGGAAVEAEWI 438 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ A+ P+ +++ P + G D + LRR Sbjct: 439 DARPLLPGVPALGDGPD--VQLWPHL--------HGTDAMYLALLRR 475 >gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121] gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121] Length = 412 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 110/425 (25%), Positives = 186/425 (43%), Gaps = 35/425 (8%) Query: 35 DSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL 94 + ++ I R P++++ +L K Y + + V++ QI Sbjct: 6 SRKQADVKPEHIPQLKEICFGVSRHYPKLNSFALHMLDKPFQEKDYDVYAAILVALYQID 65 Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ----RIAGISIIPE 150 Y+D ++A V+ AVE AK KLVN+ILRR RE ++ + P+ Sbjct: 66 YMDTPEHAAVNEAVESAK-LIGKPWAGKLVNAILRRYLREADDIKAILKAMPSVAHAHPK 124 Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKL------NAVMLPTG 201 W +R + E I +A + + L V ET KL N + Sbjct: 125 WLLKRFNKHWANE-FEHIVEANNARPPMCLRVNLSRVSRETQMEKLSQLGIENEKGEFSE 183 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-I 260 + S+ SLPGF +G VQD +A + + VLD CAAPGGKT L Sbjct: 184 SAIYLKNAVSVQSLPGFFDGDMSVQDEAAQLSASILAPKEGDKVLDACAAPGGKTGHLLE 243 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + +TA+++ RL K+ NL+RL A D + K FD +L+D PCS+ Sbjct: 244 SADIHLTAVELESWRLAKIEENLERLEFNAELICADSGDLDAWWDKTPFDKILLDVPCSA 303 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 TG IRR+PD+ R DIV+ Q++L+ +KPGG ++++ CS+ +++E + Sbjct: 304 TGVIRRNPDIKINRKPADIVELVEIQKQLVNNIWLALKPGGKLLYATCSVMPEENEHQMA 363 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + L ++ E+ ++ + I++ P+ + DGF+ + Sbjct: 364 EFLSTTEDAKEI---------NLTVPWGKKVSHGIQLLPN--------KNSHDGFYYCLI 406 Query: 439 RRLIQ 443 ++ + Sbjct: 407 EKMGK 411 >gi|258654277|ref|YP_003203433.1| Fmu (Sun) domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557502|gb|ACV80444.1| Fmu (Sun) domain protein [Nakamurella multipartita DSM 44233] Length = 494 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 150/473 (31%), Gaps = 58/473 (12%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + LL+ V + L D R + RD L + + R L ++DA Sbjct: 40 PARQAALDLLAAVRSRGAYANLALPPILRD---RRIGGRDAALATELAYGSCRALGQLDA 96 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + LR+ Q+L+ + +A V VE + A VN Sbjct: 97 VITACGDRPFAELDGEVIDALRLGAYQLLHTRIPPHAAVSSTVELVRAGDR-AGAAGYVN 155 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLEN-------------- 158 ++LRR++ ++ +A + P W L + Sbjct: 156 AVLRRIAEADLDTWVQRLAPPAEQDRLGHLAMATAHPRWIVSALADRLAPDTATPTASNT 215 Query: 159 --FYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIV 213 + + A P + L + + + Sbjct: 216 DTDTATDELEKALRADDVPPTVHLVARPGLIGRDELVTASGGTPAQYSPYGVYLHGTDPG 275 Query: 214 SLPGFAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL 269 + A+G VQD + + LDL A PGGK L A A Sbjct: 276 RVSAVADGRAAVQDEGSQLVATALATATLDGPDERWLDLAAGPGGKAGLLGAFAAGRGAH 335 Query: 270 -DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPD 327 D + + + D + +D VL+DAPC+ G +RR P+ Sbjct: 336 LDAVEIGPHRADLVRRTTAGLPVTVHTADGRASGLDEDAYDRVLLDAPCTGLGALRRRPE 395 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 W R D+ + Q++LL V+ GG++ + CS ++ VV P Sbjct: 396 SRWRRTPSDVPELVELQQELLAAAARHVRVGGLIAYVTCSPHLAETLGVV----GRRPDQ 451 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +EL + + +++ P G DG F LRR Sbjct: 452 LELCDARPFLPGVPALGDGPT----VQLWPH--------RQGTDGMFLALLRR 492 >gi|302533355|ref|ZP_07285697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp. C] gi|302442250|gb|EFL14066.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp. C] Length = 488 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 105/473 (22%), Positives = 168/473 (35%), Gaps = 49/473 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + RD L +V TLR D Sbjct: 29 PVRMLAFEALRAVDERDAYANLVLPPLLKKARQDERFQARDAALATELVYGTLRRQGTYD 88 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 89 AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 147 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+++ ++ + +A P W L + G R + Sbjct: 148 NAVLRKIAAHDLDGWLERVAPPYEEDAEEHLAVYHSHPRWVVSALWDALGGGRAGIEDLL 207 Query: 170 DACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGV 222 +A + L + E L G +L EG Sbjct: 208 EADNERPEVTLVARPGRSTPEELVEALGEESALPGRWSPYAVRMAEGGEPGALEAVREGR 267 Query: 223 WWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274 VQD + + + + LD CA PGGK A L GA + A + Sbjct: 268 AGVQDEGSQLVAMALAAVPVEGRDERWLDGCAGPGGKAALLGALAAERGAFLLASEKQPH 327 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + I FD VL+D PCS G +RR P+ W R Sbjct: 328 RARLVEKALSGNPGPYQVIAADGTRPAWLPGSFDRVLMDVPCSGLGALRRRPEARWRRRP 387 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-----SSPIPVE 389 +D+ A QR LL + +S V+ GG+V ++ CS ++ VV+ VLR +SP+ E Sbjct: 388 EDLEGFAPLQRALLREALSAVRVGGVVGYATCSPHLAETRVVVEDVLRGRGAGNSPVAAE 447 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 LV + +++ P + G D + LRR Sbjct: 448 LVDARPYMEGVPVLGDGPD----VQLWPHL--------HGTDAMYLALLRRTA 488 >gi|307326811|ref|ZP_07606003.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113] gi|306887574|gb|EFN18568.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113] Length = 489 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 99/471 (21%), Positives = 162/471 (34%), Gaps = 46/471 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR------LLSQRDQILVRAIVNVTLRF 59 R+++ L V + +L + RD L +V TLR Sbjct: 27 PVRILAFEALRAVDERDAYANLVLPPLLRKARESAEAGGPRFDARDAALATELVYGTLRH 86 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 DA++ + L + +L + Q+L + +A V +VE A+ + Sbjct: 87 QGTYDAIIAECVDRPLREVDPPVLDVLNLGAHQLLGTRIPTHAAVSASVELARVVLGD-G 145 Query: 120 FAKLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENF--YGKER 164 AK VN++LRR++ ++ + + P W L + G Sbjct: 146 RAKFVNAVLRRIAAHDLDGWLERVAPPYDEDPEEHLGVRHSHPRWVVSALWDALGGGSSG 205 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPG 217 + + A + L + T L+AV +L Sbjct: 206 IEELLAADNERPEVTLVARPGRSTAGELLDAVGEGAAVQGRWSPYAVRLTEGGEPGALEA 265 Query: 218 FAEGVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKVTALDVSK 273 EG VQD + + + LD CA PGGK A L A+ A ++ Sbjct: 266 VREGRAGVQDEGSQLVALALANAPLEGEDRRWLDGCAGPGGKAALLAALAAERGAALLAA 325 Query: 274 RRLEKLRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + + R +I D FD VLVD PC+ G +RR P+ Sbjct: 326 EKQPHRARLVARALAGNPGPYQVIAADGTRPPWRPGAFDRVLVDVPCTGLGALRRRPEAR 385 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R +D+ A QR LL + ++ + GG+V ++ CS ++ VV+ VL+ P Sbjct: 386 WRRRPEDLDGFAPLQRGLLREALASARIGGVVGYATCSPHPAETRAVVEDVLKGRGGPAV 445 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A + L I++ P G D + LRR Sbjct: 446 SAEWIDARPLLPGVPE-LGDGPDIQLWPH--------RHGTDAMYLALLRR 487 >gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1273] gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus AH1273] Length = 369 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 101/380 (26%), Positives = 172/380 (45%), Gaps = 34/380 (8%) Query: 85 LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KI 136 LLR+S+ Q+LYLD V + A + AVE AKR + ++ + +VN +LR + RE Sbjct: 2 LLRLSLYQMLYLDRVPERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLEEIK 60 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--- 193 + ++R+A + P W + + YG E + + + P V D T + Sbjct: 61 DPVERLAITTSHPAWLVQDWVSEYGLETAGKMCEVNMLPPVPTARVNVDKVTVEEAIGLL 120 Query: 194 -----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 A ++ ++ F +G +QD S+ + + VLD Sbjct: 121 ANEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDS 180 Query: 249 CAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYC 302 CAAPGGKT + KV +LD+ ++ +R DRL L + +D ++ Sbjct: 181 CAAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIRQQADRLGLENVETKALDARKVQEHF 240 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V Sbjct: 241 ENETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQGGRLV 300 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+++K ++E+V+++ L+ P E + + + EG ++I P Sbjct: 301 YSTCTIEKIENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA- 356 Query: 423 IDGVSSGMDGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 357 -------TDGFYIACLRKKV 369 >gi|220912433|ref|YP_002487742.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6] gi|219859311|gb|ACL39653.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6] Length = 527 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 100/472 (21%), Positives = 167/472 (35%), Gaps = 47/472 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L V ++ +L L +RD + LR DA Sbjct: 68 PARLVAFEVLRAVAQEDAYANLVLPARIRQHR---LDKRDAGFATELSCGALRGQGTYDA 124 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL + L + ++ LR+ V Q+L + V +A +D V A+ + L+N Sbjct: 125 VLARCVDRPLDQLDPAVLDALRIGVHQLLAMRVPAHAALDQTVGLARAVIG-AGPSALIN 183 Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKE-----RVLAI 168 ++LR+VS ++ + + PEW + + A+ Sbjct: 184 AVLRKVSAHSLDEWLDVLAADETDETRIASLRHAHPEWIVRAMRQALVAHGRPVGEINAL 243 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226 +A + ++L + L P + L G VQ Sbjct: 244 LEADNAAPVVNLVALPGLGNLDEALEDGATPGELVEGSALSSGGDLGRLSSVRAGTTRVQ 303 Query: 227 DASASIPVQLF----------GTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 D + + + + LDLCA PGGK A GA + A + + Sbjct: 304 DVGSQLVARAMAAVELGTAGPDDAAPEAWLDLCAGPGGKAALLGALARERGATLLANEPA 363 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLW 330 R + ++ L + + D + + FD VLVD PCS G +RR P+ W Sbjct: 364 PHRAKLVKQALSAVPEDTWQVRTGDGREVGAEHPGSFDRVLVDVPCSGLGALRRRPESRW 423 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 R D+ QR LL ++ V+PGG+V + CS ++ VV LR L Sbjct: 424 RRSPKDLADLGPLQRDLLSSALAAVRPGGVVAYVTCSPHPAETTAVVSDALRKRDDLELL 483 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + S+ + E ++ P + D F +R+ Sbjct: 484 DAGAALDAVSLTGNLGAGHEMTAQLWPHL--------HSTDAMFLALIRKKA 527 >gi|294811534|ref|ZP_06770177.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064] gi|326440079|ref|ZP_08214813.1| RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064] gi|294324133|gb|EFG05776.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064] Length = 481 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 167/471 (35%), Gaps = 47/471 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + + RD L +V TLR D Sbjct: 24 PVRILAFEALRAVDERDAYANLVLPPLLRKAREKGDFDARDAALATELVYGTLRLQGTYD 83 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + Q+L + +A V VE A+ + AK V Sbjct: 84 AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSATVELARVVLGD-GRAKFV 142 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LRR++R+ ++ + +A + P W L + G R + Sbjct: 143 NAVLRRIARDDLDTWVERVAPPYEKDAEEHLAVVHSHPRWIVSALWDALGGGRAGIEDLL 202 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 A + L + T L A+ +G L EG Sbjct: 203 AADNERPEVTLVARPGRSTPEELLAALGEDSGLPGRWSPYAVRLAEGGEPGLLDAVREGR 262 Query: 223 WWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278 VQD + + + LD CA PGGK A L A A ++ + Sbjct: 263 AGVQDEGSQLVALALANAPLEGPDARWLDGCAGPGGKAALLAGVAAGRGATLLAAEKQPH 322 Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + R +I D FD VL+D PCS G +RR P+ W R + Sbjct: 323 RAGLVARSLAGNPGPYQVITADGTRPPWRPDSFDRVLMDVPCSGLGALRRRPEARWRRRS 382 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS---PIPVELV 391 +D+ A QR LL + + V+ GG+V ++ CS ++ VV VLR P+ E V Sbjct: 383 EDLEGFAPLQRSLLREALRAVRVGGVVGYATCSPHLAETRVVVDDVLRGRGGDPVAAEWV 442 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I++ P + G D + LRR Sbjct: 443 DARPLLPGVPALGDGPD----IQLWPHL--------HGTDAMYLALLRRTA 481 >gi|333028379|ref|ZP_08456443.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071] gi|332748231|gb|EGJ78672.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071] Length = 486 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 162/468 (34%), Gaps = 44/468 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L ++ + RD L +V TLR D Sbjct: 32 PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 91 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V VE A+ + ++ V Sbjct: 92 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 150 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169 N++LRR+SR ++ + ++ + P W L + G R + + Sbjct: 151 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 210 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 A + L + L+A+ ++P +G Sbjct: 211 TADNERPEVTLVARPGRTDAEALLDALGEERALPGRWSPYAVRLTEGGEPGAVPAVRDGE 270 Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKR 274 VQD + + + LD CA P GA++ A + Sbjct: 271 AGVQDEGSQLVALALAKAPVEGRDALWLDACAGPGGKAALLAGLAAQRGARLVAAEKQPH 330 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + + FD VLVD PC+ G +RR P+ W R Sbjct: 331 RAGLVARALAGTPGPYQVVTADGTRPPWRPGTFDRVLVDVPCTGLGALRRRPEARWRRRP 390 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 +D+ A QR LL + + V+ GG+V ++ CS ++ VV +L EL+ Sbjct: 391 EDLDSFAPLQRALLHEALRSVRVGGVVGYATCSPHLAETRAVVADILDEWGGDAELLDAP 450 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + +++ P + G D + LRR Sbjct: 451 ALLPEVPLTGEGPD----LQLWPHV--------HGTDAMYLALLRRTA 486 >gi|288904707|ref|YP_003429928.1| RNA-binding Sun protein [Streptococcus gallolyticus UCN34] gi|288731432|emb|CBI12984.1| putative RNA-binding Sun protein [Streptococcus gallolyticus UCN34] Length = 440 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 194/452 (42%), Gaps = 36/452 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V L+ E + L+ +D+ LV IV T+ ++ Sbjct: 8 QARGLALLVLENVFEDGAYSNIALNQELSHT---TLTPKDKSLVTEIVYGTVARKITLEW 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + LL +S+ Q+LYLD + +AVV+ AV AK + K V Sbjct: 65 YLAHYI-KDRDKLDSWVYYLLMLSLYQLLYLDKIPAHAVVNDAVNIAKNRGNKKGAEKFV 123 Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175 N++LRR +R + + +P W ++L + +G+ER +AI + + Sbjct: 124 NAVLRRFTKEELPNPETIKRKNKRYSVLYSLPVWLVKKLIDQFGEERAVAIMQSLFVRNK 183 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 I +T + A + L + FA G +QD S+ + Sbjct: 184 ASIRVTNLDKLAEIEAATGAEQSILSPVGLVKTSGHFAGTDHFANGDITIQDESSQLVAP 243 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292 N +LD CAAPGGKT + + +TALD+ +L + N RLH+ Sbjct: 244 TLNIQGNEDILDACAAPGGKTTHMASYLKEGHITALDLYDHKLTLVMDNARRLHVADKIS 303 Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +MD ++ FD +LVDAPCS G IRR PD+ + ++ D Q ++L Sbjct: 304 TQKMDATTVHEHFAPDSFDKILVDAPCSGIGLIRRKPDIKYNKENQDFSALQEIQLQILD 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++ GGI+ +S C++ +++ +V+ K L + P N K + Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIVR 415 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I ITP+ + DGFF ++R+ Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439 >gi|326388835|ref|ZP_08210417.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370] gi|326206435|gb|EGD57270.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370] Length = 406 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 137/430 (31%), Positives = 209/430 (48%), Gaps = 28/430 (6%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V+R+ L D+ L AI LR+L +DA++D Sbjct: 1 MLDAVLRRGDPLDQAAPPLLRPVPRAD----DRALALAIAQEALRWLADLDALIDGATRL 56 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 +LP + +LR+ + Q+L L + +AV+ + R A + + Sbjct: 57 TLPE-DAKARTVLRLMLVQVLRLGLPPHAVIATGLPLL--VGGPRRLAH---GVFSTIVG 110 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--WAH 191 + + + +PE R +G ER AI+ P +DLT+ T WA Sbjct: 111 SADKGADLLPPVPSLPEAVAARWGLAWG-ERAQAIAAGIAVPPPLDLTLADSEATGQWAE 169 Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-GTLNNLSVLDLCA 250 +L L G +RL +++ +L G+ EG WWVQD +A++P +L LDLCA Sbjct: 170 RLGGTSLMPGHVRLPRG-QAVETLAGYEEGAWWVQDLAAALPARLLGQPQGAGRALDLCA 228 Query: 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV 310 APGGKT Q+ +G +VTALD S RRLE+L NL+R L A + DA + P+ FDA+ Sbjct: 229 APGGKTLQIAAAGWQVTALDKSARRLERLSANLERTGLAATVV-AADALTWEPEAPFDAI 287 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS+TGT RRHPDVL I + + Q LL + ++ PGG +V++ CSL+ Sbjct: 288 LVDAPCSATGTCRRHPDVLHRM--PAIEELSVLQASLLERAAGWLAPGGTLVYAVCSLEP 345 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++ E +++ + + VP+ + + + + EGW+R P M G+ Sbjct: 346 EEGEAQARRL---AGQGLTPVPVTADELPA---GLVPTAEGWLRTDPGMF----PEQGGL 395 Query: 431 DGFFAVALRR 440 DGFFA RR Sbjct: 396 DGFFAARWRR 405 >gi|297155758|gb|ADI05470.1| RNA-binding Sun protein [Streptomyces bingchenggensis BCW-1] Length = 485 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 97/473 (20%), Positives = 163/473 (34%), Gaps = 51/473 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAF-----RLLSQRDQILVRAIVNVTLRFL 60 R+++ L V + +L + + RD L +V TLR Sbjct: 24 PVRILAFEALRAVDERDAYANLVLPPLLRKARQDSTEAKPFDARDAALATELVYGTLRRQ 83 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 DA++ + L + +L + Q+L + +A V +VE A+ + Sbjct: 84 GTYDAIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GR 142 Query: 121 AKLVNSILRRV-------------SREKIELLQRIAGISIIPEWFKERLENF--YGKERV 165 AK VN++LR+V + + +A + P W L + G V Sbjct: 143 AKFVNAVLRKVAANDLDGWLEKVAPPYDEDPEEHLAVVHSHPRWIVSALWDALGGGSAGV 202 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGF 218 + +A + L + T + AV + +L Sbjct: 203 EDLLEADNERPEVTLVARPGRSTTEELIAAVGEGSALPGRWSPYAVRLAEGGEPGALDAV 262 Query: 219 AEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274 E VQD + + + LD CA PGGK A L A+ A ++ Sbjct: 263 REARAGVQDEGSQLVALALANAPLTGPDERWLDGCAGPGGKAALLGALAAERGAALLASE 322 Query: 275 RLEKLRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + ++R +I D FD L D PC+ G +RR P+ W Sbjct: 323 KQPHRAGLVERALAGNPGPYQVIAADGTRPPWRPGTFDRALADVPCTGLGALRRRPEARW 382 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI---P 387 R +D+ A QR+LL Q +S V+ GG+V ++ CS ++ VV VL+ Sbjct: 383 RRSPEDLAGFAPLQRELLRQALSAVRVGGVVGYATCSPHLAETRAVVDDVLKGRGGPAPA 442 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + + +++ P + G D + LRR Sbjct: 443 AEWIDARPLMPGVPGLGDGPD----VQLWPHL--------HGTDAMYLALLRR 483 >gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata] Length = 525 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 111/482 (23%), Positives = 189/482 (39%), Gaps = 65/482 (13%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--IL--------------VRA 51 R VS+ L + LL+ + S +S ++ V Sbjct: 58 RAVSAVRLMRIEYGGAFAD-LLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVSVAD 116 Query: 52 IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109 +V T+R+ +D ++ + + + L Q+LR+ V +I+ D+ YAVVD V Sbjct: 117 VVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVR 176 Query: 110 QAKRDKENRHFAKLVNSILRR--------------VSREKIELLQRIAGISIIPEWFKER 155 AK VN ILR+ V + + +A + P W R Sbjct: 177 LAKVALRP-GAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRR 235 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDI----ETWAHKLNAVMLPTG-------GIR 204 + G E + + L +LN++ +P +R Sbjct: 236 WVKYLGLEEATTLMTWNNNDPGFSLRANTGRGIARSDLVERLNSLKVPHELSLHLEEFVR 295 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262 +K +++V EG+ VQD SA + V + ++D CAAPGGKT + Sbjct: 296 IKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLK 355 Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKKLFDAVLVDAPCSS 318 + A+DV++ RL L + I D + + +D VL+DAPCS Sbjct: 356 GQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAVTSEVQYDKVLLDAPCSG 415 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G + + D+ W R +D+V+ Q LL VK GG++++S CS+D +++E V+ Sbjct: 416 LGVLSKRADLRWNRKLEDMVELTELQDDLLDSASKLVKHGGVLIYSTCSIDPEENEGRVE 475 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L P+ + P+ S + ++ +G+ + V +DG FA L Sbjct: 476 AFLERHPV-FSIDPVTSFVP-----SSFVTSQGFF--------LSNPVKHSLDGAFAARL 521 Query: 439 RR 440 R Sbjct: 522 VR 523 >gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 368 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 172/379 (45%), Gaps = 34/379 (8%) Query: 86 LRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIE 137 LR+S+ Q++YLD V + A + AVE AKR + ++ A +VN +LR + RE + Sbjct: 2 LRLSLYQMIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKD 60 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--- 194 ++R+A + P W + + YG E + + + P V D T + Sbjct: 61 PVERLAITTSHPVWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLA 120 Query: 195 -----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 A ++ ++ F +G +QD S+ + + +VLD C Sbjct: 121 SEGIEAKRGDLSDDAIQIERGNVAHTEAFKKGFLSIQDESSMLVARALEPNTGDAVLDSC 180 Query: 250 AAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCP 303 AAPGGKT + KV +LD+ ++ ++ +RL L + +D ++ Sbjct: 181 AAPGGKTTHIAERLKGTGKVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFA 240 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD +LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+ Sbjct: 241 NETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQIAILEKIAPLLKQGGRLVY 300 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+++K ++E+V++K L+ P E + + + EG ++I P Sbjct: 301 STCTIEKIENEQVIEKFLQEHP---EFEWDTTLKERMPEKLTPYIDEGQVQILPHYFA-- 355 Query: 424 DGVSSGMDGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 356 ------TDGFYIACLRKKV 368 >gi|144900072|emb|CAM76936.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Magnetospirillum gryphiswaldense MSR-1] Length = 431 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 98/457 (21%), Positives = 171/457 (37%), Gaps = 46/457 (10%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + LL + + L + + + +D+ V V LR Sbjct: 1 MTP--AARIAAAMELLDEIQASPKPADQISSLYFKSRRY--IGSKDRRAVAETVWRVLRT 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 RID L+ L + L +++ + + A+ Sbjct: 57 KARIDWWLEA-LDFPADARARVLVD--------MIFQGITPEPDLFQGAHSAR-----PP 102 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + PEW RL +G ER+ A +D Sbjct: 103 SQEERRLMEALRGKSPFHHAMPAWVKGEFPEWLTPRLTALWG-ERLAQEVAAMRDEAPLD 161 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE---------LPESIVSLPGFAEGVWWVQDASA 230 L V T A+ + ++V + + +G+ VQD + Sbjct: 162 LRVNTLKATRDEAHIALKKERIPSTPTDISPIGLRLANRVALVQVQAWRDGLIEVQDEGS 221 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + L ++V D CA GGKT A + + ++ A DV++ R++K + L R Sbjct: 222 QLVALLTDAQPGMAVADYCAGAGGKTLALAAAMQNKGRLVACDVAEWRVDKAQARLRRAG 281 Query: 288 LYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 ++ E D + FD VLVDAPC+ TGT RR+PD W + +++ Sbjct: 282 VHNVTRRVIDGESDKWIKRSAGSFDRVLVDAPCTGTGTWRRNPDAKWQLTEETVLELVSR 341 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+ +L VKPGG ++++ CS+ +++EE V+K L + P ++P+ + + Sbjct: 342 QQAILTSAARLVKPGGRMIYATCSILPEENEEQVEKFLAAHP-DFRVLPVPGLWGDLVGT 400 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A + P ++ G DGFFA L + Sbjct: 401 ACPV---------PGPYLRLSPYGHGTDGFFAAVLEK 428 >gi|23016738|ref|ZP_00056491.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum magnetotacticum MS-1] Length = 455 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 95/457 (20%), Positives = 173/457 (37%), Gaps = 37/457 (8%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +LS + + + + + + +D+ V V LR Sbjct: 16 MTP--AARLQAAIEVLSEIEKSAKPADSVASFYFKQRRY--IGAKDRRAVAETVWRVLRR 71 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+D L+ + P + RV +A +++ + + A + Sbjct: 72 RARLDWWLEHLDHPERPNAEGKGGARARV-LADMIFEGIKPEPDLFKGPHSAYPPEPPER 130 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + + + R P+W RL +G + + A A +D Sbjct: 131 RVLDMLAGQKSLFHRDMPPHVRGE----YPQWLTPRLTALFG-DNLDAEMGAMRDEAPLD 185 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASA 230 L V E L + + L +V + + G+ VQD + Sbjct: 186 LRVNTLKATREEAIRALAKEGIKSQPTALSPIGLRLGTRVPLVQVQAWRNGLIEVQDEGS 245 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + L +V+D CA GGKT A + + ++ A DV++ R+++ + L R Sbjct: 246 QLVALLTDPKPGQAVVDYCAGAGGKTLALAAAMQNKGRLVACDVAEWRVDRAQDRLRRAG 305 Query: 288 LYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 ++ E D + FD VLVDAPC+ TGT RR+PD W D+ + Sbjct: 306 VHNVTRRVIEGESDKWIKRSAASFDRVLVDAPCTGTGTWRRNPDAKWQFGETDLEELVVR 365 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L KPGG +V++ CS+ ++++E+ ++ L + P VP+ + Sbjct: 366 QGAILESAARLTKPGGRLVYATCSIMREENEDRIEAFLAAHP-DYRPVPVPEIWADLAGT 424 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P ++ + G DGFFA L + Sbjct: 425 PCPV---------PGPWLRLSPQAHGTDGFFAAVLEK 452 >gi|330806740|ref|YP_004351202.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374848|gb|AEA66198.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 436 Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 127/440 (28%), Positives = 198/440 (45%), Gaps = 42/440 (9%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + SL L + + RD+ + + T R+ PR+ A+ +L Sbjct: 17 GKASLNSSLPTQL-----DKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADA 71 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI---- 136 ++ LL V + Q+LY V +A + V A + K+ L+N++LRR RE Sbjct: 72 DVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKP-WAKALINAVLRRAQRESETLLA 130 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKL 193 EL + P W ++ L+ F+ E+ AI A + + L V + + L Sbjct: 131 ELEHDPVVRTAHPRWLQKSLKAFWP-EQWEAICAANNAHPPMILRVNRRHHTRDAYLALL 189 Query: 194 NAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 +P + + E P + +LPGFAEG VQD +A + L VLD Sbjct: 190 GEAGIPAVPCQYSRDGIVLETPGDVRALPGFAEGWISVQDEAAQLAADLLELAPGQRVLD 249 Query: 248 LCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYC 302 C APGGKT ++ + K V A+D+ +RL +++ NL+RL L AE I D + Sbjct: 250 ACCAPGGKTCHILEAEPKLAGVVAVDLEAKRLVRVKENLERLGLEAELIAADGRDTATWW 309 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG+++ Sbjct: 310 DGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGELLDALWPTLEVGGMLL 369 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS ++ EV++ L +P EL + A K L+ EG Sbjct: 370 YATCSTLPTENTEVIEAFLARTPGARELDIASQAGLKQPHGRQLLAQEG----------- 418 Query: 423 IDGVSSGMDGFFAVALRRLI 442 G DGF+ L ++ Sbjct: 419 ------GHDGFYYAKLIKIA 432 >gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315444643|ref|YP_004077522.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1] gi|145216797|gb|ABP46201.1| Fmu (Sun) domain protein [Mycobacterium gilvum PYR-GCK] gi|315262946|gb|ADT99687.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1] Length = 462 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 104/454 (22%), Positives = 159/454 (35%), Gaps = 44/454 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V + L D R ++ RD + T R +DA Sbjct: 17 PARQAAFDVLRAVSERDSYANLALPALLRD---RRITGRDAAFATELTYGTCRAKGLLDA 73 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ + L LLR+ QIL V D+A V VEQA + + A VN Sbjct: 74 VIAAAAGRPVDHIDPILLDLLRLGAYQILRTRVDDHAAVSTTVEQAGLEFDTAR-AGFVN 132 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170 +LR ++R +A + P W + + + A+ Sbjct: 133 GVLRTIARRDEADWVAELAPPAATDPVGHLAFVHAHPRWIGQAFADALGARAGELGALLA 192 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + S + L + A + + + + E VQD Sbjct: 193 SDDSRPEVHLAARPGMLTAAELAEQTGGTVGRYSPYAVYLGDGDPGGVAAVRESRALVQD 252 Query: 228 ASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTA--LDVSKRRLEKLR 280 + + + LDLCA PGGKTA L G A V Sbjct: 253 EGSQLVARALTLAPVDGPDGGRWLDLCAGPGGKTALLAALGQPSGATVTAVEPAPRRAEL 312 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + L D++ +D + FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 313 VEQNTAGLP-VDVVRVDGRESGLTPGFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPAL 371 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QR+LL I +PGG+V+++ CS ++ VV LR P V + + + Sbjct: 372 AKLQRELLAAAIRLTRPGGVVLYATCSPHLAETAGVVADALRRQP--VTALDTGELFSPA 429 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 D S +++ P G D F Sbjct: 430 TDTGDGPS----VQLWPH--------RHGTDAMF 451 >gi|15837530|ref|NP_298218.1| hypothetical protein XF0928 [Xylella fastidiosa 9a5c] gi|46397049|sp|Q9PEV0|RSMB_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|9105851|gb|AAF83738.1|AE003932_2 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 421 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 126/443 (28%), Positives = 194/443 (43%), Gaps = 37/443 (8%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 V++ +L+ V+ + SL L RD+ LV AI LR P +A L Sbjct: 2 VAARVLALVVDQGRSLKTELAAALPTLE----DVRDRALVEAICFAVLRRRPVYEAALTQ 57 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L R L+ LL V AQ+ L V YA + V+ A R H A VN++LR Sbjct: 58 WLARPLGRGDAQLRGLLMVGFAQLDVLKVPPYAALSATVD-ACRVLGWPHRASFVNAVLR 116 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYIDLTV-KFDIE 187 R RE++ ++ A P W ER+ +G+ + + +P+++ + + D Sbjct: 117 RAQRERLPVVSSDAAW---PRWLAERIRADWGELAEAIFDASLKPAPMWLRVNLRYGDRH 173 Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 T+ +L A L L ++ LPGF G VQD SA L Sbjct: 174 TYVQRLQAAGLEAVPSGLVPEALALDCSMPVLQLPGFQAGEVSVQDLSAQQVAALLSPAP 233 Query: 242 NLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMD 297 + VLD CAAPGGK A +TALDV +RL ++ DR+H+ A D Sbjct: 234 HARVLDACAAPGGKAAHLLERAPTLCLTALDVDMQRLRRVAETCDRIHVKARLCVADATD 293 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS+TG +RR PDVL R +D++ Q +LL ++P Sbjct: 294 LAAWWDGEAFDAVLLDAPCSATGVVRRQPDVLLHRRAEDLLPLLNIQSRLLDACWRTLRP 353 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+ CS+ + +++ ++ L + P ++ + Sbjct: 354 GGVLVYVTCSVLRAENQTQLEAFLARTVDACAEDPGDAYGQPA----------------- 396 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + G DGFF L + Sbjct: 397 GLGRQRLPGEQGGDGFFYARLIK 419 >gi|158313556|ref|YP_001506064.1| Fmu (Sun) domain-containing protein [Frankia sp. EAN1pec] gi|158108961|gb|ABW11158.1| Fmu (Sun) domain protein [Frankia sp. EAN1pec] Length = 495 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 99/490 (20%), Positives = 158/490 (32%), Gaps = 66/490 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL++ +L V + LL R LS RD+ + +LR +D Sbjct: 14 PARLLAWEVLRAVDERGAYANLLLPALLS---GRRLSPRDRGFATELTYGSLRAQGTLDG 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH------ 119 VLD V + ++ LR+ Q+L V A V V+ + R Sbjct: 71 VLDTVTSRPVASVDPPVRDALRLGAYQLLSTRVPPRAAVASTVDLVRATCGERPVRFANA 130 Query: 120 ----------FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLA 167 A ++L + +A ++ P W + + + G + A Sbjct: 131 VLRRVAARIEAAAGDIAVLLSAPDIAEDPAGHLAVVTAHPRWIVDVVLDALGGDVAGAHA 190 Query: 168 ISDACISPLYIDLTVKFDIETWAHK--------LNAVMLPTGGIRLKELPESIVSLPGFA 219 A + + L + L A + SLP A Sbjct: 191 ALAANDTRPAVHLVARPGRIDAEALVAQAASVGLGARRGAGSPYAVHLDGGDPGSLPAVA 250 Query: 220 EGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQ--------LIVSGAKV 266 G VQD + + ++ + +DLCA PGGK A + Sbjct: 251 AGDASVQDEGSQLVTLALASVPTIGRDTGLTVDLCAGPGGKAALLAALQAVGEPAETMRE 310 Query: 267 TALDVSKRRLEKLRCNLDR-----------LHLYAEDIIEMDAFDYC-PKKLFDAVLVDA 314 A + +L R A + D + D VLVD Sbjct: 311 PAAGGHRPPPARLLALEPRAARAGLVAASLAGFPAALAVRADGRFPPVRPGMADRVLVDV 370 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G +RR P+ W R D+ QR+LL+ + V+PGG V + CS +++ Sbjct: 371 PCSGLGALRRRPEARWRRTPADVAALVPLQRQLLVAALDLVRPGGAVAYVTCSPHPEETS 430 Query: 375 EVVQKVLRSSPI----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 EVV + + P + L ++++ P + G Sbjct: 431 EVVTAIAQQRGDVAILDARRCPPFAGPLFGDGAPGGLGDGPFVQLWPHL--------HGT 482 Query: 431 DGFFAVALRR 440 D F LRR Sbjct: 483 DAMFLALLRR 492 >gi|313791967|gb|EFS40068.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL110PA1] gi|327453314|gb|EGE99968.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL092PA1] Length = 458 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 100/459 (21%), Positives = 177/459 (38%), Gaps = 37/459 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L V L + L+ RD +V+ T R Sbjct: 10 RKADPARRPAYSALLAVETHGAYANLALADHLRAAK---LTGRDAAFATELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEAASCRAPAKLQPGVRVVLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELL----------QRIAGISIIPEWFKERLENFYGKERVLAISDA 171 LVN+I RR+S +E +A ++ P W + ++ G + V A Sbjct: 126 GLVNAISRRISTHSLEEWATEIGGRDAVDVMALRTLHPTWIVKAFQDRLGADEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + + + P + + EG +QD + Sbjct: 186 DNEPPVPTLVVRPGLAQRDELGSGTPTRYSPWGVVR-PGNPSDVAAVREGRAGIQDEGSQ 244 Query: 232 IPVQLFG-----TLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCN 282 + + LDLCA PGGK+A +TA+++ + R + + Sbjct: 245 LVILALVRAAKANSCFGQWLDLCAGPGGKSALLAGLANQHDTSLTAVELHEHRADLVSKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L R ++ D PK+ F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-RTIPGDHRVMTADGTHPPLPKQSFAAVLADVPCSGLGSLRRRPEARWRRTPTDVEELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL+ ++ +PGG++ + CS + ++ +++ + P+ V P A +I Sbjct: 364 QLQRRLLISAVNLTRPGGVIGYVTCSPHRAETIDIINSACATLPVDVLDAP---AMLPNI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A I++ P G D F LR+ Sbjct: 421 PNIAASGNTNTIQLWPH--------RHGTDAMFCALLRK 451 >gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688] gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688] Length = 427 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 105/448 (23%), Positives = 193/448 (43%), Gaps = 39/448 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ + V+ +L LD + S R L+ + + + + + LR ++ A+ Sbjct: 4 AQQLAAEAVHQVL-TGRNLGVTLDAMF--SRQRSLTPQQRGMTQDLSYGCLRQYGQLQAL 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L+ +L L + L+ LL V++ Q+ A + +VD AV QA + L N+ Sbjct: 61 LNQLLQKPL--QDERLRCLLLVAIYQLQQARAASHTIVDQAV-QASAQFKKPWVKGLTNA 117 Query: 127 ILRRVSREKIELLQRIAG-----ISIIPEWFKERLENFYGKER-VLAISDACISPLYIDL 180 +LR R++ L++ I P+W+ +L + Y ++ + ++ P+ + + Sbjct: 118 VLRNFLRQQDALVKNIDPTDDVARYSYPQWWVNKLRHQYPQDWEAMLLAGNQHPPMTLRV 177 Query: 181 TVKF-DIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +E ++ +L + G P + +PGF EG VQDA A Sbjct: 178 NRRHLSVEAYSQQLADAGIAASLLGGSAVTLTQPIPVERIPGFLEGDVSVQDAGAQWAAP 237 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 L + VLD C APGGKT ++ + + A+D RL + NL RL L A Sbjct: 238 LLDLAPGMRVLDACCAPGGKTGHILELADVDLVAMDSDAGRLRRTEENLQRLKLKAQLVT 297 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 DA + + FD +L D PC+++G +RRH D+ W R D+ Q +L Q Sbjct: 298 GDAADASGWWDSRPFDRILADVPCTASGIVRRHVDIKWLRREADVASFVRQQALILPQLW 357 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + GG ++++ CS+ +++++ + + L+ +L A Sbjct: 358 QCLAKGGKLLYATCSVFHEENQQQIDRFLQQHADAKQLPLSQDAS--------------- 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFF L++ Sbjct: 403 ----PHARHGQLYPCAAHDGFFYALLQK 426 >gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella longbeachae D-4968] gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Legionella longbeachae NSW150] gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella longbeachae D-4968] gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Legionella longbeachae NSW150] Length = 458 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 198/457 (43%), Gaps = 49/457 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + N RL + ++L+ ++ ++ L+ L+ S + I R Sbjct: 30 RKKPNERLHALYILTHLLVEKTPLSQLMASSAEVSPM----------TKEICFGFCRHYF 79 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R+ A+ + ++ + + L + + Q+ Y+ + DYAVV V ++ K+ Sbjct: 80 RLQAIANCLIHKKPKEIELWV--ALLIGIYQLHYMKLPDYAVVKETVALLEKIKKG-WAK 136 Query: 122 KLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 LVN++LR R+ E+ + + P+W RL+ + AI+ A + Sbjct: 137 GLVNAVLRNFCRQHDEILTRLNKDPLFLYGHPQWLLRRLQKDWPNNW-QAITKANEAHPP 195 Query: 178 IDLTVKFDIETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWVQDA 228 + L V + LN + + E P + LPGFA+G+ VQD Sbjct: 196 MTLRVNLRKISVMEYLNVLKQANITATPHSIAAEAIVLETPCDVHQLPGFAQGLVSVQDG 255 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDR 285 +A + L L VLD C APGGKT ++ A+D+ +RL+++R NL+R Sbjct: 256 AAQLATSLLSLKPGLRVLDACCAPGGKTCHILEKEPHLAECVAVDIDSKRLDRVRENLNR 315 Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 LHL+A + + + KLFD +L+DAPCS+TG IRRH D+ R+ ++I Sbjct: 316 LHLHATLLQGDASNPSQWWDGKLFDRILLDAPCSATGVIRRHSDIKLLRNDEEIATITKI 375 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L + GG++V++ CS+ ++E+ + ++++P + Sbjct: 376 QHTMLSSLWPLLTKGGLLVYATCSVMLAENEQQIANFIKNNPD---------CNLITKSW 426 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +I P MDGFF L + Sbjct: 427 PWGHTTKYGQQILPGEQC--------MDGFFYAVLFK 455 >gi|284991542|ref|YP_003410096.1| Fmu (Sun) domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064787|gb|ADB75725.1| Fmu (Sun) domain protein [Geodermatophilus obscurus DSM 43160] Length = 460 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 109/453 (24%), Positives = 172/453 (37%), Gaps = 36/453 (7%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 ARL + +L V + LL + A L +RD + TLR +DAV Sbjct: 23 ARLTAFDVLDGVSGRDAYANLLLPQLLRERA-ADLGERDAAFATQLAYGTLRATGTLDAV 81 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L ++ L + LLR+ Q+L L V +A VD V + + LVN+ Sbjct: 82 LAPLVSRPLAELDPRVLDLLRLGAYQLLDLRVPAHAAVDTTVALTRAIVGT-GASGLVNA 140 Query: 127 ILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE-RVLAISDACISP 175 +LR+V+ A ++ P W E + E V A + Sbjct: 141 VLRKVAAGGDRAAWVERLDGDRDQRLALVTDHPRWIVEAWRDALRDEAEVEPALLADDAA 200 Query: 176 LYIDLTVKF-DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + L + E A + P ++ +P EG VQD + + Sbjct: 201 PEVHLVARRVPREQLAAESGGQPGPWSPYAVRLGGGDPARVPSVREGRAAVQDEGSQLAA 260 Query: 235 QLFGTLNNLS----VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 L LD+CA PGGK A + G ++TA D + R E +R L Sbjct: 261 LLLARAPLEGPDAAWLDVCAGPGGKSGLLAAVRPEGVRLTAADRAPHRAELVRQALRDED 320 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + + P FD VL+DAPC+ G +RR P+V W R DD+ Q L Sbjct: 321 DVEVLVADGRTPPWTPGS-FDRVLLDAPCTGLGALRRRPEVRWRRTADDVPPLVELQTAL 379 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L ++ V+ GG+V + CS ++ ++ VE++P+ + + +A Sbjct: 380 LDGALASVRTGGVVAYVTCSPHTDETVA--VVDAAAARDDVEVLPVAPLFPEVPGLARGD 437 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++ P G D F LRR Sbjct: 438 ----YGQLWPH--------RHGTDAMFMALLRR 458 >gi|88811382|ref|ZP_01126637.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis Nb-231] gi|88791271|gb|EAR22383.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis Nb-231] Length = 423 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 119/445 (26%), Positives = 193/445 (43%), Gaps = 39/445 (8%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L V+ + L DS L RD+ L + + LR+ R++A++ +L Sbjct: 1 MQTLQDVLAHGRT----LPNALADSVAALQDSRDRALCQELCYGVLRWHSRLEALVLNLL 56 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + L LL + + Q++Y + +A V V+ A+ A VN++LRR Sbjct: 57 EQRPRNRDRDLTLLLELGLYQLMYTQIPPHAAVSATVDTARA-LGKSWAAGWVNAVLRRF 115 Query: 132 SREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RE+ LQ A +P W + L + + ++ A + + + + Sbjct: 116 QRERANRLQAVDLDCATRHAMPPWLLQWLRADWPSDW-QSLVQASNARAPLTVRINRRRR 174 Query: 188 ---TWAHKLNAVMLPTGG------IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 W +L+AV L + + LPGFA+G VQDA+A L Sbjct: 175 DRDAWLAQLSAVSLTGAHLTELPQAIMLSRALPVTELPGFADGEVSVQDAAAQFAAMLLA 234 Query: 239 TLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295 VLD CAAPGGKT + + +TALD+ +RL ++ NL RL L A Sbjct: 235 LRPKQRVLDACAAPGGKTTHILEQAEVTLTALDIDAQRLTRVAENLARLGLQANLLVGDA 294 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D + FD +LVDAPCS TG IRRHPD+ W R D+ A Q++LL + + Sbjct: 295 TDPASWWDGLTFDRILVDAPCSGTGVIRRHPDIKWLRRPSDLPALAATQQRLLNRLWPLL 354 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 GG ++++ CS+ + +++ V++ LR + P D+ + + + +I Sbjct: 355 SSGGRLIYATCSVLRAENDAVIESFLRGHGDALVRAP---------DIPLGRALQFGHQI 405 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P + MDGF+ L + Sbjct: 406 LPGERD--------MDGFYYACLEK 422 >gi|262202278|ref|YP_003273486.1| Fmu (Sun) domain-containing protein [Gordonia bronchialis DSM 43247] gi|262085625|gb|ACY21593.1| Fmu (Sun) domain protein [Gordonia bronchialis DSM 43247] Length = 460 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 103/461 (22%), Positives = 169/461 (36%), Gaps = 44/461 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+ + L V + +L + R ++ RD L + T R IDA Sbjct: 18 PARVAARDTLRAVRERDAYANLVLPKMLRE---RHITGRDAALATELTYGTARAQGIIDA 74 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + L +LR+ Q+L + +A V +V+ + + A VN Sbjct: 75 IIAAAAGRPVAEIDGQLLDVLRLGAYQLLRTRIGSHAAVSTSVDLVRAENGM-GPAGFVN 133 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170 ++LR++S+ ++ +A P W E + + A Sbjct: 134 AVLRKISQRDEDIWVDELAPSVADDIVGHLAFRYAHPRWIAEVFFSALGGSAGLLQAALA 193 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 A + L + E A + + L EG VQD Sbjct: 194 ADDERPPVHLVARPGFITAEELALASGGEVGDHSPYCVYLPGGDPGELDAVREGFAGVQD 253 Query: 228 ASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282 + + + + LD+CA PGGK A L A V + + R Sbjct: 254 EGSQLVARAVAVAPVVGEDGGRWLDMCAGPGGKAALLGALADINGA-HVDAVEVSEHRAE 312 Query: 283 LDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 L R + + DA FD +L+DAPCS G++RR P+ W R D+ + Sbjct: 313 LIRKTVRDLPVHVQVADARAAGLDPGFDRILLDAPCSGLGSLRRRPEARWRRQPADVDEL 372 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QR+LL + + V+PGG+VV+S CS ++ EVV VL P + + Sbjct: 373 VVLQRELLTEAVRLVRPGGLVVYSTCSPHPAETVEVVSSVLAEHPD------VEQIDARP 426 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A L +++ P + G D F LRR+ Sbjct: 427 LVPADQLGDGPHVQLWPHL--------HGTDAMFLAVLRRM 459 >gi|77456243|ref|YP_345748.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1] gi|77380246|gb|ABA71759.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 436 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 121/440 (27%), Positives = 192/440 (43%), Gaps = 42/440 (9%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + SL L + + RD+ + + T R+ PR+ A+ + +L Sbjct: 17 GKASLNSSLPTQL-----DKVEDRDRGFTQDLAFGTARWQPRLSALAEKLLQKPFKAADA 71 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140 ++ LL V + Q+LY V +A + V A + K+ L+N++LR RE + Sbjct: 72 DVEALLLVGLYQLLYTRVPPHAAIGETVGCADKLKKP-WAKGLLNAVLRNAQREHEAIFA 130 Query: 141 RIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKL 193 + + P W ++ L+ F+ E+ AI +A + + L V + + L Sbjct: 131 ELERDPVVRTAHPRWLQKSLKAFWP-EQWEAICEANNAHPPMILRVNRRHHSRDAYLGLL 189 Query: 194 NAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + SLPGFAEG VQD +A + L VLD Sbjct: 190 TEAGIAAQPCTFSRDGIVLEAAADVRSLPGFAEGWISVQDEAAQLAADLLDLAPGQRVLD 249 Query: 248 LCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYC 302 C APGGKT ++ + V A+D+ +RL +++ NL+RL L AE I D + Sbjct: 250 ACCAPGGKTCHILEAEPALAGVVAVDLEAKRLVRVKENLERLGLNAELIAADGRDTAAWW 309 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K F +L+DAPCS+TG IRRHPD+ TR DDIV A Q +LL ++ GGI++ Sbjct: 310 DGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIVALAQLQGELLDAMWKTLEVGGILL 369 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS ++ EV+ L +P EL +A K P + Sbjct: 370 YATCSTLPTENTEVIGAFLERTPGARELDLATTAGIKQ----------------PH-GRQ 412 Query: 423 IDGVSSGMDGFFAVALRRLI 442 + G DGF+ L ++ Sbjct: 413 LLAQQGGHDGFYYAKLIKIA 432 >gi|330719303|ref|ZP_08313903.1| 16S rRNA methyltransferase B [Leuconostoc fallax KCTC 3537] Length = 411 Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 94/425 (22%), Positives = 176/425 (41%), Gaps = 41/425 (9%) Query: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VA 99 +S D+ L+ +V ++ + L+ + + + +++LL ++ Q+ YLD + Sbjct: 1 MSDADRRLLTTLVYGVIQHRLTLAYWLEPFVAN--KKLDDWVRELLYTALFQMQYLDKIP 58 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILR-------RVSREKIELLQRIAGISIIPEWF 152 +AV + ++E AK + K V IL R + ++ ++ +P W Sbjct: 59 QHAVFNESIEVAK-ILGHVGIRKFVTGILHDISRKGLRDISAIEDNIEALSVKFSLPIWL 117 Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG-----GIR 204 + L G ++ + V ++ L Sbjct: 118 IKTLIEQNGLTETQSMLATINDVPRQSVRVNTVLSSVDDVTLSLENEGFSVKKSEVARDA 177 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFG-TLNNLSVLDLCAAPGGKTAQLIVS- 262 L + + G +QD SA +PV+ + ++LD AAPGGKT Q+ Sbjct: 178 LVISGGYVAGTKAYQSGWITIQDESAMLPVESLQLNQHVKTILDAAAAPGGKTTQMAQMI 237 Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHL----YAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 A +TALD+ + +++ ++ N RL + A + D + + FD +LVDAPC Sbjct: 238 SSEASITALDIHQHKVKLIQDNAKRLGVGDRVEALSLDARDVPSHFAHQQFDRILVDAPC 297 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G +RR P++ + + D+ A Q ++L + GI+V+S C++ +Q+++ V Sbjct: 298 SGLGLLRRKPEIRYDKTLADVNHLAELQLEILSAVSQNLAKNGIIVYSTCTILQQENDNV 357 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V L+ P ELV +A+ D E ++I P DGFF Sbjct: 358 VNLFLKEHP-DFELVRTQTAHNLKADR-----EEMTLQIYPHDY--------HTDGFFVA 403 Query: 437 ALRRL 441 +++ Sbjct: 404 TFQKI 408 >gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929] gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929] Length = 443 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 110/464 (23%), Positives = 199/464 (42%), Gaps = 45/464 (9%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK + N R ++ L ++ + + D+ L IV ++ Sbjct: 1 MKYTTNNPRQLAVMTLVR-TSNGSYSNLQINAVIQST---SMGPADKGLFTNIVYGVIQH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++ L L + + +++LL ++ Q+ YLD V A+ D ++ AK+ + Sbjct: 57 RLTLEYQLRPFL-REPEKTEAWVKELLYTAMYQLEYLDRVPKRAIFDETIKIAKQM-GHD 114 Query: 119 HFAKLVNSILRRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDA 171 + V IL ++ R+ + L I + +P W E L+ GK + +I + Sbjct: 115 GTRRFVTGILHQMDRQGMPNLDDIQDEKTRLSIEYSVPTWLVEMLDEQLGKPKTASILAS 174 Query: 172 CISPLYIDLTVK---FDIETWAHKL-----NAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + + L +A + I+ F +G+ Sbjct: 175 LNKAPKQSVRANLAKISQKDLLADLAKDGYDAEPSQVSSEGIIINDGQIIHSDFFTDGLL 234 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRC 281 +QD SA +PV+ + +VLD C+APGGKT Q+ + KV ALD+ K +L+ ++ Sbjct: 235 TIQDESAMLPVESMQISPDNNVLDACSAPGGKTTQIASRLKAGKVFALDIHKNKLKTVQR 294 Query: 282 NLDRLHL-YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N RL + + E+D LFD++LVDAPCS G +RR P++ + + DI Sbjct: 295 NATRLGVYKQVETFELDARKVDTKFEDGLFDSILVDAPCSGLGLLRRKPEIRYDKTIADI 354 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + + Q ++L + VK GG + +S C++ KQ++++V+ K + +P E+ +A Sbjct: 355 NRLSEIQLQILNAVSAKVKTGGTITYSTCTIVKQENQDVIAKFISENPN-FEITKTKTAN 413 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D ++I PD + DGFF +L R Sbjct: 414 HLNPDS-------KMVQIYPDDYDS--------DGFFVCSLIRK 442 >gi|317967915|ref|ZP_07969305.1| sun protein [Synechococcus sp. CB0205] Length = 441 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 189/466 (40%), Gaps = 59/466 (12%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ +R V+ +L V L+ E G LS +D+ L + +R Sbjct: 6 PGLASRQVAWQVLQAV-AAGAYADGALERELGRV---SLSPQDRGLATELAYGAIRQRRL 61 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +DA LD + R+ L+ LL + + Q+L D + A V VE AKR A Sbjct: 62 LDAWLDQLGKVPAERQPPKLRWLLHLGLYQLLSSDRIPASAAVSTTVELAKR-GGLSRLA 120 Query: 122 KLVNSILRRVSREKI---------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN +LR R + + + +A +P+W L + E+ A + A Sbjct: 121 PVVNGMLRAFLRRQEAGEALPLPGDPVAALAIRQSLPDWLAAALLQWQTPEQAEAFARAS 180 Query: 173 ISPLYIDLTVKFDIET----------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 +P +DL V T + G+ +K + LPG+ EG Sbjct: 181 NTPPALDLRVNGLRATPEAVQAALAAAGVVAEPIEGLPMGLTIKGRSGDLRHLPGYDEGH 240 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 W VQD SA L VLD CAAPGGK+ L + +V ALD + RL ++ Sbjct: 241 WCVQDRSAQTIAPLLDPKPGERVLDACAAPGGKSTHLAELMGDQGQVLALDRGEARLRRV 300 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 N DRL L + DA + + FDA+L+DAPCS GT+ RH D W D Sbjct: 301 ARNSDRLGLGCIETRHGDAVELVSEAPELLGQFDALLIDAPCSGLGTLARHADARWRIDP 360 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 I QR+LL + +KP G +V++ C++ +++ ++++ L+ P Sbjct: 361 AAIEGLVTLQRQLLEGLLPLLKPAGRLVYATCTVHPEENGDLLEAFLKDHP--------- 411 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L E ++ P L FFA + R Sbjct: 412 -----------QLRLEQSFQLWPGQLGGGGDG------FFAARIVR 440 >gi|322434767|ref|YP_004216979.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9] gi|321162494|gb|ADW68199.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9] Length = 459 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 116/453 (25%), Positives = 186/453 (41%), Gaps = 56/453 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + +L V + LL ++ D LS+ D L A+V LR+ Sbjct: 51 AKVTPARRAAFEILMLVKAGKGHSDELLHGQWTD----KLSEADTNLTTALVMGVLRWEI 106 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +DA L +L R + LR+ Q+L++D + +A + +VE + H Sbjct: 107 ALDARLRTLLQRPDQRLAEPVAMALRLGAFQLLHMDRIPAHAALSESVELCRA-AGEPHA 165 Query: 121 AKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 +VN++LR+ + E A P W ER YG++ L I +A S Sbjct: 166 TGMVNAVLRKVAALPKPGTKVFETTAAFAERLGHPLWLVERWVENYGRDAALKICEADQS 225 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 E LP +G V + +A Sbjct: 226 --------------------------ESGEGGVFSERDAELPSIDDGSRLVAEIAAKALP 259 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAE 291 Q+ G V D CAAPGGKT GA+V A DVS +R+ ++ L R + Sbjct: 260 QVEG--RAARVWDCCAAPGGKTLVLAKRAEGAEVLATDVSTKRMGQMESRLKRFKYAKGV 317 Query: 292 DIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 DA FD VL D PC+ TGT+ R+P++ +++V+ + QR++L Sbjct: 318 TCEVADAAKLPKDMGTFDLVLCDVPCTGTGTLGRNPEIRERLKVEELVRQSQRQREILAA 377 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-MALSP 409 + V GG +V+S CSL+ +++E VV+ V+ +VP+ + + +++ Sbjct: 378 ALGRVALGGRLVYSTCSLEPEENERVVEAVI---GSAWRVVPIEEMGVTGLAVEMHSMAQ 434 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +G +R P + G DGF+AV L R Sbjct: 435 DGALRTLPGV--------HGCDGFYAVVLERTA 459 >gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii] Length = 476 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 113/472 (23%), Positives = 187/472 (39%), Gaps = 62/472 (13%) Query: 15 LSCVMRKRISLTCL-------LDLEYGDSAF------RLLSQRDQILVRAIVNVTLRFLP 61 L + L LD E L + LV V +R+ Sbjct: 17 LMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWKK 76 Query: 62 RIDAVLDFVLISS---LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D V+ V R + L+Q+LR+ ++L L+V YAVV+ AV+ A Sbjct: 77 YLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLEVPAYAVVNEAVKLANAASR-A 135 Query: 119 HFAKLVNSILRRVSREKIELLQRI--------------AGISIIPEWFKERLENFYGKER 164 KL N++LR V+ K + + A I P W R + YG E Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVTGNLRSQARALATIHSHPVWMVRRWTDRYGTED 195 Query: 165 VLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPT-------GGIRLKELPESIV 213 L + + + + L + +L + + +R+ + ++ Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLTKLEVSYVKSPLLKDFVRVTSGLQEVL 255 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALD 270 +G VQD S + V+L V+D CAAPGGK+ + KV A+D Sbjct: 256 RSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315 Query: 271 VSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPD 327 ++K RL+ L+ + + + + +DA D K D VL+DAPCS G + + D Sbjct: 316 INKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSKRAD 375 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R + + Q +LL V+PGG++V+S CS++ ++ + + L + Sbjct: 376 LRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCSIEPDENIDRITSFLARNQNF 435 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + L PL + + +S EG P + G+DG FA LR Sbjct: 436 I-LEPLEREVPREM-----VSREGCFYSLP--------YTHGIDGAFAAKLR 473 >gi|330976420|gb|EGH76476.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 416 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 115/419 (27%), Positives = 190/419 (45%), Gaps = 23/419 (5%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ L + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+ Y + +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLL 114 Query: 125 NSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R+ LL + + P W ++ L+ + + + ++ P+ + Sbjct: 115 NAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFDI-ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASI 232 + + + + + LN L + P + SLPGFAEG VQD +A + Sbjct: 175 VNRRHNRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT L+ + V A+D+ +RL ++R NLDRL L Sbjct: 235 AADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDRLGLD 294 Query: 290 A--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALAALQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 L ++ GG++V++ CS ++ +V++ L + EL A + A Sbjct: 355 LDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGIKQA 413 >gi|213584492|ref|ZP_03366318.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 364 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 108/387 (27%), Positives = 173/387 (44%), Gaps = 39/387 (10%) Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + K+ ++ L+ V Q+LY V +A + VE A K + L+N +LR+ Sbjct: 1 MSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-LKGLINGVLRQ 59 Query: 131 VSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPLYIDLT-VKFD 185 R++ LL A + P W +RL+N Y + I + P+++ + Sbjct: 60 FQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPMWLRVNRTHHT 119 Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + W L + P + +LPGFAEG VQDASA Sbjct: 120 RDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAP 179 Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 N +LDLCAAPGGKT + A V A+D+ ++RL ++ NL RL + A + + D Sbjct: 180 QNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQRLSRVYDNLKRLGMKAT-VKQGD 238 Query: 298 AFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 239 GRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPR 298 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +KPGG +V++ CS+ +++ + ++ L+ +P ++ EG Sbjct: 299 LKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETGTPDQPGQQNLPGG--EEG--- 353 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 DGFF L + Sbjct: 354 ----------------DGFFYAKLIKK 364 >gi|229587594|ref|YP_002869713.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas fluorescens SBW25] gi|229359460|emb|CAY46301.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas fluorescens SBW25] Length = 436 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 126/455 (27%), Positives = 198/455 (43%), Gaps = 40/455 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L + + RD+ + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLNGKASLNSSLPTQL-----DKVEDRDRGFTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+LY V +A + V A + K+ L+ Sbjct: 56 ALSAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKP-WAKALL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LRR RE EL + P W ++ L+ F+ + + ++ P+ + Sbjct: 115 NAVLRRAQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILR 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASI 232 + + +L + + + SLPGFAEG VQD +A + Sbjct: 175 VNRRHHSRDAYLQLLTTAGINATPCVYSVDGIVLEAAADVRSLPGFAEGWISVQDEAAQL 234 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLY 289 L VLD C APGGKT ++ V A+D+ +RL ++R NL RL L Sbjct: 235 AADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLARLGLS 294 Query: 290 AEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 AE I D + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q +L Sbjct: 295 AELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRKPDDIAALAALQGEL 354 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + GGI++++ CS ++ EV++ L + EL +A K L Sbjct: 355 LDALWPTLDVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIKQPHGRQLL 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG G DGF+ L ++ Sbjct: 415 AQEG-----------------GHDGFYYAKLIKIA 432 >gi|320547878|ref|ZP_08042161.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812] gi|320447418|gb|EFW88178.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812] Length = 440 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 116/452 (25%), Positives = 199/452 (44%), Gaps = 36/452 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V + L+ E + LSQ+D+ LV IV T+ ++ Sbjct: 8 QARGLALLVLENVFEEGAYSNIALNQELKHTH---LSQKDKSLVTEIVYGTVARKITLEW 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + LL +S+ Q+LYLD + +AVV+ AV AK + K V Sbjct: 65 YLAHYIE-DRDKLDSWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAKNRGNKKGAEKFV 123 Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175 N++LRR+ +R + + +P W ++L + +G+ER +AI + + Sbjct: 124 NAVLRRLTKDDLPNPESIKRKNKRYSVLYSLPVWLVKKLIHQFGEERAVAIMQSLFVRNK 183 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 I +T + A + L ++ FA G +QD S+ + Sbjct: 184 ASIRVTNPDKLAEIEAATGAKPSLLSPVGLVKISGHFAGTDYFANGDITIQDESSQLVTP 243 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-ED 292 + +LD CAAPGGKT + ++ +TALD+ +L + N RLH+ Sbjct: 244 TLNIKGSEKILDACAAPGGKTTHIASYLTDGHITALDLYDHKLALVMDNAKRLHVDDKIS 303 Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 MD ++ FD +LVDAPCS G IRR PD+ + ++ D+ Q ++L Sbjct: 304 TQRMDATTVHEHFAADTFDKILVDAPCSGIGLIRRKPDIKYNKENQDLTALQEIQLQILD 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++ GGI+ +S C++ +++ +V+ K L + P N K + Sbjct: 364 SVCQTLRKGGIITYSTCTIFDEENFQVIHKFLETHP--------NFEQVKLSHTQEDIIK 415 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I ITP+ + DGFF ++R+ Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439 >gi|320105842|ref|YP_004181432.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4] gi|319924363|gb|ADV81438.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4] Length = 419 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 118/454 (25%), Positives = 194/454 (42%), Gaps = 65/454 (14%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V + LL ++ LS D+ L +V TLR+ ID+ Sbjct: 10 AARTAAFTILHRVASGKGHSDDLLHTMAVNA----LSSEDRNLTTTLVLGTLRWQLAIDS 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +L L + LR+ Q+L LD + D+A ++ +VE A+ + H A +V Sbjct: 66 ILRPYLQRPFQEMPAPVLLALRLGTFQLLLLDRIPDHAALNESVELARAN-GAPHAAGMV 124 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N++LRRV RE L + + + P+W +R ++ YG +I++A I Sbjct: 125 NAVLRRVQREGDALKKNLDPEAAHPQWLLDRWKHTYGNRTAHSIAEADQHEPNI------ 178 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L PE+ + + + + AS+S P Sbjct: 179 ------------------PSLFNAPENAQQMDDGSRLIAELTAASSSGPK---------R 211 Query: 245 VLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----A 298 +LD CAAPGGKT AK+ A D+S RRL ++ ++R L + + D Sbjct: 212 ILDCCAAPGGKTLVLAARHPDAKIVAADLSPRRLSAMQRRVERAGLPNIETVVADLTAQQ 271 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + F +L D PCS TGT+ R+P++ T ++ + A QR +L +S + PG Sbjct: 272 RSGPFTQPFQLILCDVPCSGTGTLARNPEIRHTIRPEEFARQAERQRAILSTALSLLAPG 331 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRS-----------SPIPVELVPLNSAYWKSIDMAMAL 407 G +++S CSL+ +++E+VV+ VL +P+ L N +S Sbjct: 332 GRLIYSTCSLEPEENEDVVRSVLGQPQHAALKQLDIAPLFARLAKENILSAESATNLRDT 391 Query: 408 SPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G +R P + DGFFA + R Sbjct: 392 ALRGTTLRTLPG--------THATDGFFAALIER 417 >gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 180 str. F0310] gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 180 str. F0310] Length = 490 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 94/475 (19%), Positives = 167/475 (35%), Gaps = 45/475 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRIDA 65 R V+ +L V +L + S RD +V+ TLR + +D Sbjct: 19 PRRVAYEVLRAVTVDGAFANIILPKALRQARLHGHFSDRDAAFASELVHGTLRAMGWLDW 78 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-------- 117 V+ + SL + + LLRV Q+L + V D+A V V+ A+ + Sbjct: 79 VIARHVDRSLSQLDPRVLVLLRVGAHQLLDMRVPDHAAVSATVDVAREHLTDGPVRFINA 138 Query: 118 --RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISD 170 R + + + + P W Y ++ + Sbjct: 139 VLRSITREGPGEREAALEAIEDEDEALGVRYSHPSWMVRAFREALVAHGYPAGELIDVLK 198 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPESIVSLPGFAEG 221 A + L + + T + + LP +G Sbjct: 199 ADNEVPTVTLVARPSLMTVDELADEAEDVLDTRVAFGTVSPYAVLLESGDPARLPSIRDG 258 Query: 222 VWWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVS 272 QD + + + + + LDLCA PGGK A GA+VTA +V Sbjct: 259 RCGAQDEGSQLAALIAASAPLDGGRDERWLDLCAGPGGKAAMLAGLAAKVGARVTANEVH 318 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDY------CPKKLFDAVLVDAPCSSTGTIRRHP 326 R + L + +++ D + P FD V+VDAPCS G++RR P Sbjct: 319 PHRARLVERTT--RLLDSIEVVSGDGRSFGGGQSAWPLASFDRVIVDAPCSGMGSMRRRP 376 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + W R D+ + Q +L + ++ +PGG++ + CS ++ E V+++ + Sbjct: 377 ESRWNRTPADVAELTQLQHELTERAVALTRPGGVLTYVTCSPHAAETREHVERLTQR--G 434 Query: 387 PVELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VEL+ + + + G I + ++ G D F +R+ Sbjct: 435 EVELLDTVALANDCCPAPLDVPASAGVIAGSQGRTLQLWDHRFGTDLMFVACMRK 489 >gi|320527282|ref|ZP_08028467.1| ribosomal RNA small subunit methyltransferase B [Solobacterium moorei F0204] gi|320132306|gb|EFW24851.1| ribosomal RNA small subunit methyltransferase B [Solobacterium moorei F0204] Length = 405 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 98/442 (22%), Positives = 179/442 (40%), Gaps = 45/442 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+ R ++L V R+ + LL +S+ + L I+ T+R ++ Sbjct: 1 MSVRAEVLNILERVFRQNGFASLLLRR-------ANISKEEMGLASEIIYGTIRNKTLLE 53 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKL 123 K + LL +SV Q+L+LD + YAV+ AVE A + ++ A L Sbjct: 54 EQWRPFTKH----VKPRVVALLNMSVYQLLFLDSIPSYAVIFEAVELAGKSEKEFVNAVL 109 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + + + ++ +A ++ P W + + YG E + I+ P + V Sbjct: 110 RKVQVAGLRKPAGNTIEELAVLTSHPLWILQLWKAHYGFETMKEIALHNQEPSLVYGRVN 169 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + + F++G+ +QD + V+ L + Sbjct: 170 TLKCKKTEIAQMPDVRMLEDDCFFYAGILQRTELFSKGMVLIQDRHSQKVVRKLDVLPGM 229 Query: 244 SVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD CAAPG KT L+ + K+ A D+ + R + ++R + + DA Sbjct: 230 QVLDACAAPGTKTQQIACLMKNQGKIIATDLYEARCNLIDELMNRTGVSIVSTQQNDATI 289 Query: 301 --YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 PK+ FD +L+DAPCS G + P++ W + I + Q +L +++ G Sbjct: 290 AGKFPKESFDRILIDAPCSGLGDLSHKPEIRWHLEPTSIDELVHTQEAILDANAEYLRVG 349 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 GI+V+S C+L+++++E+ ++K L P V L Sbjct: 350 GILVYSTCTLNRKENEQQIKKFLVKHPNYVLLEE-------------------------- 383 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 E + + + DGF+ L+R Sbjct: 384 --ETLFPMENDADGFYYAKLKR 403 >gi|283769599|ref|ZP_06342495.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia extructa W1219] gi|283103867|gb|EFC05253.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia extructa W1219] Length = 404 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 88/444 (19%), Positives = 153/444 (34%), Gaps = 49/444 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R +L V+ + L + + V +V TLR + Sbjct: 1 MKEREAIVRILEHVLYDHAYASLSLKQLKIEGSI--------GFVTEVVYGTLRHYKLLQ 52 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + LL +++ Q ++ V DYA+V+ VE K ++ A L Sbjct: 53 EQYKPFVKKIKKKMD----VLLVMALYQHHFMKVPDYAIVNSTVELVKSQEKGFVNAVLR 108 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + +A PEW YG + L I P + Sbjct: 109 KIFQSEWIEPMGNNPEDLAIRYSHPEWLIRLWLAQYGLNKTLEILAENQKPSKVYGRYNP 168 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A K +++S F VQD + + V L Sbjct: 169 F---LAKKEELTGFTFYENDCVSYTGNLLSTEAFRNHKVLVQDRHSQMIVPQLDLRRGLK 225 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AF 299 VLD CA+PG K+ Q + + ++ + D+ RL+ L + D F Sbjct: 226 VLDACASPGTKSQQIATYMCNDGEIISCDIYPHRLKLLDQLASQTGTKIIHSELQDASCF 285 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 ++ FD +L+D PCS G + P++ + + I + Q K+L S++K G Sbjct: 286 RKDWQQAFDRILLDVPCSGLGDLSHKPEIRYHISPNSIDEIQQLQSKILEVNASYLKEEG 345 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 I+V+S C+L+++++ + +Q+ L + E P Sbjct: 346 ILVYSTCTLNQKENHKQIQQFLNQYEEFIL--------------------EKEKTFFP-- 383 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443 +G DGF+ LRR + Sbjct: 384 -------KNGSDGFYYAKLRRKRK 400 >gi|154251623|ref|YP_001412447.1| Fmu (Sun) domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155573|gb|ABS62790.1| Fmu (Sun) domain protein [Parvibaculum lavamentivorans DS-1] Length = 433 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 100/462 (21%), Positives = 156/462 (33%), Gaps = 55/462 (11%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +LS + + + D + + +D+ V +V LR Sbjct: 1 MTPG--ARLQSAISVLSDIFKSGRPADRVFDTWARSNRYAG--SKDRAAVSDLVFTVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA-KRDKENR 118 + A + + L + Q VD A Sbjct: 57 RAELTAAVGS------DDARLLAFAALTLGAEQ----------GVDEVAALADGARHAPE 100 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + + L PEW E +G + A + Sbjct: 101 PLSPEEQTALS--MAVLPGESAPPWTRFNYPEWLHPEFEAAFGNG-LEREMAAFMERAPT 157 Query: 179 DLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 DL V E L + +++ L F +G+ +QD Sbjct: 158 DLRVNTLKMKREKALAALTGEGLSAEATPWSPWGLRLTSRGNVLGLATFRDGIVEIQDEG 217 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + L G V+DLCA GGK A ++ + ++ A D RRL L + R Sbjct: 218 SQLACLLAGAAPGEQVVDLCAGGGGKSLALAAMMKNHGQIYACDTDARRLSGLTPRVRRA 277 Query: 287 HLYAEDIIE--------MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + D D VLVDAPCS TG RR P W+ + ++ Sbjct: 278 GIRNLQTRVLGPFTPDMADKDLAGLASHADCVLVDAPCSGTGAWRRSPGARWSLSPEMLM 337 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q ++L +G V+PGG +V+ CSL ++E V+ L P P S + Sbjct: 338 GYRAAQAEVLTRGARLVRPGGRLVYVTCSLLPSENETQVEAFLAVHP-AFTPQPWASNWP 396 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + A W+R+TP S+G DGFF LRR Sbjct: 397 EHVPLPPAPHGN-WLRLTP--------ASTGTDGFFVAILRR 429 >gi|171778151|ref|ZP_02919408.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283133|gb|EDT48557.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 440 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 199/452 (44%), Gaps = 36/452 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L V + L+ E LSQ+D+ LV IV T+ ++ Sbjct: 8 QARGLALVVLENVFEEGAYSNIALNQELK---QTQLSQKDKSLVTEIVYGTVARKITLEW 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + LL +S+ Q+LYLD + +AVV+ AV AK + K V Sbjct: 65 YLAHYIE-DRDKLDPWVYYLLMLSLYQLLYLDKMPAHAVVNDAVNIAKNRGNKKGAEKFV 123 Query: 125 NSILRRV-------SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISP 175 N++LRR+ +R + + +P W ++L + +G++R AI + + Sbjct: 124 NAVLRRLTKDDLPNPESIKRKNKRYSVLYSLPVWLVKKLIDQFGEDRAEAIMQSLFVRNK 183 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 I +T + A + L + FA+G +QD S+ + Sbjct: 184 ASIRVTNPEKLAEIKAATGAEQSTLSPVGLVKTSGHFAGTDYFAQGDITIQDESSQLVAP 243 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAED 292 + ++LD CAAPGGKT + ++ +TALD+ +L+ + N RLH+ Sbjct: 244 TLNIQGDENILDACAAPGGKTTHMASYLTSGHITALDLYDHKLDLVMDNAKRLHVADKIS 303 Query: 293 IIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +MD ++ FD +LVDAPCS G IRR PD+ + ++ D Q ++L Sbjct: 304 TQKMDATTVHEHFAPDTFDKILVDAPCSGIGLIRRKPDIKYNKENQDFTALQEIQLQILD 363 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++ GGI+ +S C++ +++ +V+ K L + P N K + Sbjct: 364 SVCQTLRKGGIITYSTCTIFDKENFQVINKFLETHP--------NFEQVKLSHTQEDIVR 415 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G I ITP+ + DGFF ++R+ Sbjct: 416 DGCIAITPEQYQ--------TDGFFIGQVKRI 439 >gi|254497984|ref|ZP_05110747.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii LLAP12] gi|254352761|gb|EET11533.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii LLAP12] Length = 426 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 123/459 (26%), Positives = 201/459 (43%), Gaps = 53/459 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRF 59 M N RL + +L+ ++ + SL+ L+ S D + + I R Sbjct: 1 MNK--NERLHALKILTTLLADKSSLSQLMP-----------SSADVSPMTKEICFGFCRH 47 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+ A+ D +L + L + + Q+ Y++ DYAVV V ++ K+ Sbjct: 48 YFRLQAIADCLLKKRPKE--AEIWIALLIGLYQLHYMNQPDYAVVKETVALLEKTKK-AW 104 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISII----PEWFKERLENFYGKERVLAISDACISP 175 LVN++LR R+K ELL +++ + P+W +RL+ + + AI+ A + Sbjct: 105 AKGLVNAVLRNFCRQKEELLAKLSQDPLFVYGQPQWLLKRLKTDWPNDW-QAIAQANDAH 163 Query: 176 LYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQ 226 + L V + LN + + P + LPGFAEG VQ Sbjct: 164 PPMTLRVNIRKNSVADYLQALNQAGVEAHAHPVAPDGITLVSPCDVRQLPGFAEGCISVQ 223 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNL 283 DA+A + V L L +LD C APGGKT ++ + ALDV +RL +++ NL Sbjct: 224 DAAAQLAVSLLALKPGLRLLDACCAPGGKTCHILETEPNLSACVALDVDPKRLIRVQENL 283 Query: 284 DRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL+L A + + +LFD +L+DAPCS+TG IRRH D+ R D+IV Sbjct: 284 TRLNLQATLLQGDASTPTTWWDGQLFDRILLDAPCSATGVIRRHSDIKLLRTNDEIVTVT 343 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + G++V++ CS+ ++E+ + + + +P L S Sbjct: 344 KIQHTILNSLWPLLAKDGLMVYATCSVISAENEQQIARFVAENPDCKVL---------SG 394 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +I P GMDGFF L + Sbjct: 395 NWPWGCATGHGQQILPGDQ--------GMDGFFYTVLLK 425 >gi|313898375|ref|ZP_07831912.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. HGF2] gi|312956757|gb|EFR38388.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp. HGF2] Length = 415 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 99/451 (21%), Positives = 180/451 (39%), Gaps = 51/451 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ +L + + LL + +D+ L+ IV TL+ Sbjct: 1 MNARGIAYTMLRDICLHKTYSNLLLRKGLNQAK-----PQDKGLITQIVYGTLQNYRLCR 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123 + + + LL +SV Q+ Y+D YA+++ AVE K+ + + AKL Sbjct: 56 YQWEDCVKKLPSD---EVCVLLDMSVYQLFYMDKLPAYAIINDAVEITKKQI-HGNMAKL 111 Query: 124 VNSILRRVSREKIELLQRI-----AGISIIPEWFKERLENFYGKERVLAISDACIS---P 175 VN++L V R + A + P W + + YG + I +A + Sbjct: 112 VNAVLHAVQRRGKREITGKEEEALAIRTSHPTWLVQMWKAQYGWDNAQKICEADMETKPN 171 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T K + + ++ S+ + P +A+G+ +QD ++ + + Sbjct: 172 AARVNTWKITRDELMKQDSSFQKGYLSEDALLYDASLAATPWYAQGLLSIQDEASQLIAR 231 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + +LD+C+APG K + + + + D+ + R+E +R RL + Sbjct: 232 IVDPQKGEQILDVCSAPGTKANHMAELMQNDGSIVCGDIHEHRVELIREGAARLGITILK 291 Query: 293 IIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 MDA + LFD VL D PCS G + R D+ + D+ Q+ +L + Sbjct: 292 PQVMDATELKEVEGILFDRVLCDVPCSGYGVLARKSDIKVHMQSGDMDTLIPIQKAILAK 351 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 VK GI+V+S C+L+K+++E+ VQ L+ + Sbjct: 352 SAEHVKEHGILVYSTCTLNKKENEKQVQAFLKEHENFTLIEE------------------ 393 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I ++ DGF+ L+R+ Sbjct: 394 ----------RTIFPYTAHTDGFYMAKLQRI 414 >gi|20093735|ref|NP_613582.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886632|gb|AAM01512.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 449 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 107/462 (23%), Positives = 183/462 (39%), Gaps = 44/462 (9%) Query: 7 AR--LVSSHLLSCVMRKRISLTC-LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR +++ L VMR + +L + + Q + R++V LR + Sbjct: 6 ARCYALAAKSLIEVMRTKSYPIQYVLRKTLSEY-----DDKTQSVTRSMVYDVLRRYGTL 60 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-NRHFAK 122 + V++ V S LP + L+ V+ ++LY V D A AK +R Sbjct: 61 ERVVEDVSRSELP---PLERALVMVAANEVLYEGKHPAPVTDSATRAAKELGLNHRRVHG 117 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID--- 179 +V + E + + R+ P WF E+ ++ + + + P Sbjct: 118 VVADLEEYERPEPEDEIDRLCLEYHHPRWFVEKFGALLDEDELKELMEVHNEPPEYYTFR 177 Query: 180 -LTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--------VSLPGFAEGVWWVQDASA 230 T D+E + + + L + EG QD +A Sbjct: 178 VNTTAADVEDVLREFEEHGFEVERGEYVDYCIRVKKGQPLRLEELECWREGHIVPQDEAA 237 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLH 287 ++ ++ + DLCAAPGGKT + A+DVS+ RL +L +R+ Sbjct: 238 ALVTEILNPQPGERIADLCAAPGGKTTHIAQLTEDEAEILAVDVSRVRLRRLERFAERMV 297 Query: 288 LYAEDIIEMDAF----DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +++ D + FD VL+D PCSS GT+R PDV W DI + A Sbjct: 298 FENIEVLRADVRRLGRNPRYVGKFDRVLLDPPCSSLGTLRSDPDVKWKIGPRDIRELALK 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAYWKS 400 QR+L+ +KPGG++V+S C++ +++E VV + ++ P+ V Sbjct: 358 QRQLIRAAARLLKPGGVLVYSTCTITPEENELVVSEAIKRDRLRPVDVRSEFEFLHPPLR 417 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +D + G R+ P + G GFF L++L Sbjct: 418 VDGVSSSLEAG--RMWPHV--------HGTTGFFVAKLKKLT 449 >gi|312958118|ref|ZP_07772641.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6] gi|311287549|gb|EFQ66107.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6] Length = 436 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 133/456 (29%), Positives = 202/456 (44%), Gaps = 42/456 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN RL ++ L+ V+ + SL L ++ + RD+ + + T R+ PR+ Sbjct: 1 MNPRLAAAKALAAVLNGKASLNSSLPMQL-----DKVEDRDRGFTQDLAFGTARWQPRLS 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+ +L ++ LL V + Q+LY V +A + V A + K+ L+ Sbjct: 56 ALAAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVGCADKLKKP-WAKALL 114 Query: 125 NSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N++LRR RE EL + P W ++ L+ F+ E+ AI A + + L Sbjct: 115 NAVLRRAQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWP-EQWEAICAANNAHPPMIL 173 Query: 181 TV---KFDIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASAS 231 V + + L A + + E + SLPGFAEG VQD +A Sbjct: 174 RVNRRHHGRDAYLQLLTAAGINATPCVYSTDGIVLEAAADVRSLPGFAEGWISVQDEAAQ 233 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHL 288 + L VLD C APGGKT ++ V A+D+ +RL ++R NL RL L Sbjct: 234 LAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAKRLVRVRENLARLGL 293 Query: 289 YAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 AE I D + K F +L+DAPCS+TG IRRHPD+ TR DDI A Q + Sbjct: 294 SAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALAVLQGE 353 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL ++ GGI++++ CS ++ EV++ L + EL +A K Sbjct: 354 LLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSGARELDLATTAGIKQPHGRQL 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L EG G DGF+ L ++ Sbjct: 414 LVQEG-----------------GHDGFYYAKLIKIA 432 >gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei U32] gi|299794185|gb|ADJ44560.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis mediterranei U32] Length = 474 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 92/460 (20%), Positives = 163/460 (35%), Gaps = 43/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L+ V K +L + R ++ RD L + T R +DA Sbjct: 32 PARQAAFDVLAAVRTKDAYANLVLPDLLRE---RRITGRDAALATELTYGTSRAQGLLDA 88 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +++ L + ++ LR+ V Q+L + ++A V V+ + + + N Sbjct: 89 IIESCAERPLKQTDPAVLDALRLGVYQLLRTRIPEHAAVTSTVDLVRAEAGS-WATGFAN 147 Query: 126 SILRRVSREKIELLQR-------------IAGISIIPEWFKERLENFYGKERV--LAISD 170 +ILR+VS + A + P W G + A + Sbjct: 148 AILRKVSEKDETTWLDELAPDEAADPIGAYALRTAHPRWIARSFAEALGDKGAGLKAALE 207 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 A + + L + + A G+RL E + V Sbjct: 208 ADDARPEVHLVARPGEISADELAAITGGDPAPYSPYGVRLPAGAGDPADAEPVRERLAAV 267 Query: 226 QDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280 QD + + + + LDLCA PGGK A L A A D ++ + + Sbjct: 268 QDEGSQLCAIAATKVPLEGSDERWLDLCAGPGGKAALLGALAAMSGAAVDAVEKAPHRAK 327 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + D + + +D +LVDAPCS G +RR P+ W R D+ Sbjct: 328 LVEKATTGLPVKVHVGDGRESGLEPGYDRILVDAPCSGLGALRRRPEARWRRQPSDVADL 387 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L+ ++PGG + + CS ++E V + R + E+V + Sbjct: 388 TKLQGELITAAYDLLRPGGALTYVVCSPHLAETEGVFAETARR--LKAEVVDAREFFPGV 445 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ ++++ P G D F LR+ Sbjct: 446 PELGDGP----YVQLWPH--------RHGTDAMFCAVLRK 473 >gi|89067213|ref|ZP_01154726.1| ribosomal RNA small subunit methyltransferase B, putative [Oceanicola granulosus HTCC2516] gi|89046782|gb|EAR52836.1| ribosomal RNA small subunit methyltransferase B, putative [Oceanicola granulosus HTCC2516] Length = 432 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 197/377 (52%), Gaps = 16/377 (4%) Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 D +L L P +++ LR++ +I A + VVD V+ R + L Sbjct: 70 DRMLKPHLSKRPPD---AVRNALRLATLEI-GEGAAAHGVVDAWVDLVGRHPHTSRYRGL 125 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 VN++LR+++ E ++ + +P W + L +G V + A + +DLT + Sbjct: 126 VNAVLRKIAEAGPEAWSKL-PVPNLPRWLRRPLAEAWGDRPVQQMERAHFAGAPLDLTAR 184 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 D A +LPTG +RL + + +LPGFAEG +WVQDA+A++P +L G Sbjct: 185 TDPAALAEATGGALLPTGSVRLAQA-GQVTALPGFAEGAFWVQDAAAALPARLLGARPGE 243 Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 VLDLCAAPGGKT Q+ +GA VTALD+S RL ++ NL R L A + DA + Sbjct: 244 RVLDLCAAPGGKTLQVAATGADVTALDISPDRLARVEENLARCGL-AARTLAGDALAFDE 302 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 +DA+L+DAPCS+TGTIRRHPD+ +D + + Q +LL ++ ++PGG +VF Sbjct: 303 GG-WDAILLDAPCSATGTIRRHPDLPHAKDGAEFGRLIELQARLLDHALTLLRPGGRLVF 361 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 CSL + E V++ L + + ++PL + + + EG +R+ PD Sbjct: 362 CTCSLLPDEGEVQVEEALAAR-DDIAVLPLPDLPGLAPEWR---TEEGGLRLRPDYW--- 414 Query: 424 DGVSSGMDGFFAVALRR 440 GMDGF+ L + Sbjct: 415 -PERGGMDGFYMALLTK 430 >gi|116670233|ref|YP_831166.1| Fmu (Sun) domain-containing protein [Arthrobacter sp. FB24] gi|116610342|gb|ABK03066.1| Fmu (Sun) domain protein [Arthrobacter sp. FB24] Length = 539 Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 100/483 (20%), Positives = 163/483 (33%), Gaps = 59/483 (12%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L V + +L L +RD + LR DA Sbjct: 68 PARLVAFEVLRAVASEDAYANLVLPARIRHH---GLDKRDAGFATELSYGALRGQGTYDA 124 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL + L + ++ LR+ Q+L + V +A +D V A+ + L+N Sbjct: 125 VLARCVDRPLDQLDPAILDALRIGAHQLLAMRVPAHAALDQTVGLARAVIG-AGPSALIN 183 Query: 126 SILRRVSREKIELL------------QRIAGISIIPEWFKERLENF-----YGKERVLAI 168 ++LR+VS ++ + + PEW L + + Sbjct: 184 AVLRKVSAHTLDEWLELLLSDEQDETRVASIRYAHPEWIVRALRQSLVAHGRPVTEINEL 243 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226 +A + ++L + + L + L EG VQ Sbjct: 244 LEADNAAPVVNLVALPGLGSLDEALEGGATAGELVEGSALSSGGDLGRLASVREGSTRVQ 303 Query: 227 DASASIPVQLFGT----------------------LNNLSVLDLCAAPGGKTAQ----LI 260 D + + + LDLCA PGGK A Sbjct: 304 DVGSQLVARAMAAVDLNSGDLHAPGPESADGQSGAKGGEKWLDLCAGPGGKAALLGALAR 363 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSS 318 GA + A + + R + +R L + + D D + FD VLVD PCS Sbjct: 364 QQGATLLANEPAPHRAKLVRQALAAVPHEVWHVRTGDGRDVGTEMAGTFDRVLVDVPCSG 423 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G +RR P+ W R D+ QR+LL + V+PGG+V + CS ++ VV Sbjct: 424 LGALRRRPESRWRRTPKDLADLGPLQRELLKSALDAVRPGGVVAYVTCSPHPAETTAVVT 483 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 LR L + S+ + E ++ P + D F + Sbjct: 484 DALRKRDDLELLDAGAALDKVSLPGHLEAGHEMTAQLWPHV--------HRTDAMFLALI 535 Query: 439 RRL 441 + Sbjct: 536 HKK 538 >gi|71908772|ref|YP_286359.1| Fmu (Sun)/ nucleolar NOL1/Nop2p [Dechloromonas aromatica RCB] gi|71848393|gb|AAZ47889.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Dechloromonas aromatica RCB] Length = 420 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 110/464 (23%), Positives = 171/464 (36%), Gaps = 70/464 (15%) Query: 5 MNAR------LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M AR + +L ++R ++ + D L D+ V V LR Sbjct: 1 MKARFTPALFAHAEAVLGQLLRFDHPADAVVSRYFRDHR--ELGHADRAFVAETVFAVLR 58 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 ++A + + L ++A R R Sbjct: 59 RGRSLEARCGGQMS---------DRHRLLAALA-------------------VARGWSQR 90 Query: 119 HFAKLVNSILRRV---SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 A ++ + + E A +P+W +RLE +G E L +S A P Sbjct: 91 ELAPVLKASEEEWLSGVKAVREEDLPPAVRCDLPDWLYQRLEAQFGAEETLLLSKALNQP 150 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQ 226 +DL V + E KL A + L + + P F EG + VQ Sbjct: 151 APLDLRVNTLKMNREVLLEKLAADGIAAEAAPLSPMAVRLRDKPALAKTALFLEGAYEVQ 210 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + + L V+D CA GGKT L+ + ++ A DVS +RL L+ L Sbjct: 211 DEGSQLLGYLMEPKRGEMVVDFCAGAGGKTLLLGALMRNTGRLYAFDVSDKRLANLKPRL 270 Query: 284 DRLHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 R L E D D VLVDAPCS GT+RR+PD+ W + + + Sbjct: 271 ARSGLSNVHPARIEHERDTKIKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSETSVAE 330 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L V+PGG +V++ CSL +++E++ L P L P ++ K Sbjct: 331 LTVKQASILEAAAKLVRPGGRLVYATCSLLSAENDEIIAAFLEKHP-DFTLTPASAVLAK 389 Query: 400 SIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ EG +R+ P DGFFA L + Sbjct: 390 -----QDIAYEGDVLRLLPH--------KHNTDGFFAAILDKKA 420 >gi|309776537|ref|ZP_07671518.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 3_1_53] gi|308915714|gb|EFP61473.1| ribosomal RNA small subunit methyltransferase B [Erysipelotrichaceae bacterium 3_1_53] Length = 415 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 98/451 (21%), Positives = 177/451 (39%), Gaps = 51/451 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR ++ +L + + LL + +D+ L+ IV TL+ Sbjct: 1 MNARGIAFDMLKDIFLHKTYSNLLLRKGLNQAK-----AQDKGLITQIVYGTLQNYRLCR 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123 + + +L +SV Q+LY+D YA+++ AV+ K+ + AKL Sbjct: 56 YQWMDCVKKLPSD---EVCIVLDMSVYQLLYMDKLPAYAIINDAVDITKKQI-HVKMAKL 111 Query: 124 VNSILRRVSREKIE-----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS---P 175 VN++L V R + +A + P W + + YG + I +A + Sbjct: 112 VNAVLHAVERRGEREVTGKQEEILAIKTSHPTWLVQMWKAQYGWDVTQNICEADMETKPN 171 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T K + + S+ + P + +G+ +QD ++ + + Sbjct: 172 AARVNTWKITRDALMELDASFQKGYLSEDAVLYDTSLAATPWYEQGLLSIQDEASQLIAR 231 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + +LD+C+APG K + + + + D+ R+E ++ +RL + Sbjct: 232 IVDPQRGEQILDVCSAPGTKADHMAELMQNEGCIVCGDIHAHRVELIKEGAERLGITILK 291 Query: 293 IIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 MDA + LFD VL D PCS G + R D+ + D+ QR +L + Sbjct: 292 PQVMDATELKEVEGMLFDRVLCDVPCSGYGVLARKSDIKVHMQSTDMDTLIPVQRAILAK 351 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 VK GI+V+S C+L+K+++E+ +Q L+ P L Sbjct: 352 SAHHVKKQGILVYSTCTLNKKENEKQIQLFLKEHPNFKCLEE------------------ 393 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I + DGF+ L+R+ Sbjct: 394 ----------RTIFPFEAHTDGFYMAKLQRI 414 >gi|114775554|ref|ZP_01451122.1| Sun protein [Mariprofundus ferrooxydans PV-1] gi|114553665|gb|EAU56046.1| Sun protein [Mariprofundus ferrooxydans PV-1] Length = 404 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 20/385 (5%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M R + L+ ++ ++ ++ L R + L+ +V LR ++ Sbjct: 1 MQVRKAAIESLADILVRQRKAEQAMERYGVR-----LDARGRGLLHELVYGVLRRFYSLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A S + + L + Q+ Y+ V +A + V A + N V Sbjct: 56 ADYSRFCRSKPDD---TARMALLIGTYQLRYMRVPAHAALSETV--AAVMQSNPKAGGFV 110 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N++LRRVS + + + +P W + +G E+V A S+A + + L + Sbjct: 111 NAVLRRVSEHEPPQKLKPNQRAELPRWIYAGWRDAFGAEQVTACSEALKTVPQLSLALFT 170 Query: 185 DIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 D + W ++ T L + +LPG+ EG + V D +A V Sbjct: 171 DRDKWLEQVTGMGIDAVAGELTPCAVLLPAGTDVTTLPGYEEGAFTVIDQAAQAAVMALE 230 Query: 239 TLNNL-SVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + +LD+CAAPGGKTA A + A++++ RR+ +L NL RL +I+ Sbjct: 231 PVCRNGVILDICAAPGGKTAMLSHRFPEATILAIELNARRIPRLNENLQRLGCSNVQVIQ 290 Query: 296 MDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D + P DA+L+DAPCS++G +RRHPD + D + A QR+LL + + Sbjct: 291 ADGLNLPLPSLSVDALLLDAPCSASGILRRHPDAKFLHDEQAVETLAALQRRLLSESLRV 350 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQK 379 +KP +V++ CS+ Q++E+V+ + Sbjct: 351 LKPDAAMVYAVCSIHPQENEQVLAE 375 >gi|237745923|ref|ZP_04576403.1| sun family protein [Oxalobacter formigenes HOxBLS] gi|229377274|gb|EEO27365.1| sun family protein [Oxalobacter formigenes HOxBLS] Length = 418 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 101/445 (22%), Positives = 171/445 (38%), Gaps = 56/445 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L V++ ++ + + A L R++ + V LR + + + Sbjct: 13 QVLREVLQFAAPADGVISRYFREHA--KLGMRERGAIAETVYTILRNRLVYNHLSESGTG 70 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + R L+ + +A I +D + V K +R Sbjct: 71 SQMRR-------LVLLGLADIYGIDALGGITEEEKVWLDHVMKIDRSRLPKK-------- 115 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + +P+W +RL YG++ ++ +P +DL V E Sbjct: 116 -----------MQANLPDWLYDRLVRQYGEDETFRLAKVLNTPAPLDLRVNTLKTKREEA 164 Query: 190 AHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L V + ++ ++P F EG VQD + + Q+ G Sbjct: 165 LKVLKEVPVDCEATPYASSGIRLRKKIALQNMPLFKEGGVEVQDEGSQLLAQIVGAKRGE 224 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT + + ++ A DVS +RL K++ L R L E Sbjct: 225 MVVDFCAGAGGKTLALGTAMRNTGRLYAFDVSDKRLAKMKPRLARSGLSNVHPIQIAHER 284 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D D VLVD+PCS GT+RR+PD+ W + + IV+ A Q+ +L VK Sbjct: 285 DVRIKRLAGKSDRVLVDSPCSGLGTLRRNPDLKWRQTPETIVEMAEKQQAILESAARLVK 344 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V++ CSL + ++E++V L LVP+ + ++++ Sbjct: 345 PGGRLVYATCSLLEDENEKIVSGFLAK-DERFVLVPMQKVLKEGKVDLETGD---FLKLL 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P DGFFA R+ Sbjct: 401 PH--------RHQTDGFFAAVFERV 417 >gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B [Dermacoccus sp. Ellin185] gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B [Dermacoccus sp. Ellin185] Length = 489 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 98/487 (20%), Positives = 164/487 (33%), Gaps = 61/487 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++G AR + +L V + LS RD + T+R Sbjct: 17 RTGDPARSAALAVLRAVDD-GAYANLEMPKVLTRH---DLSGRDAAFATELALGTIRRQG 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D V++ + + + +LR+ V QIL + V +A V A+ + A Sbjct: 73 FYDRVIETGSGRAPSQIDPVVLAVLRLGVHQILSMRVPVHAATSETVALAREHAGS-GAA 131 Query: 122 KLVNSILRRVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKERV---- 165 VN++LRR E A + P W L R Sbjct: 132 GFVNAVLRRAGERDHETWIADLTRGVDDADEVRAVATSHPRWVVSALRQSLRGHRAAGGD 191 Query: 166 ---------LAISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVS 214 A+ +A +P + L + + T + A + + Sbjct: 192 GQASLDDALDALLEADNTPPRVSLVARPGLATVDELVASGAEASDLSPVGAVLPFGDPAN 251 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLN-----------NLSVLDLCAAPGGKTA----QL 259 +P + VQD + + + LDLCA PGGK A Sbjct: 252 IPAIRQTRAAVQDEGSQLLALALADADVPPRTASGGDAREDWLDLCAGPGGKAALLGAVA 311 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFD--YCPKKLFDAVLVDA 314 + G + + S+ R + +R L R L I D D +D VL+DA Sbjct: 312 HLRGDVLYCNEASEHRTDLVRRTL-RALLDDGAEIYIGTGDGRDLGREEPGTYDRVLLDA 370 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PC+ G +RR P+ W R D+ + + Q +LL I + GG++ ++ CS ++ Sbjct: 371 PCTGLGALRRRPESRWRRQPSDVAQLSALQVELLDSAIDATRAGGVIGYATCSPHPAETL 430 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 VV +VL V+ + + +++ P + G D F Sbjct: 431 AVVAEVLGRRDDVVQEDAWPLFRDAFDEPIERVGDLPSVQLWPHL--------HGTDAMF 482 Query: 435 AVALRRL 441 LR+ Sbjct: 483 FALLRKK 489 >gi|117928484|ref|YP_873035.1| Fmu (Sun) domain-containing protein [Acidothermus cellulolyticus 11B] gi|117648947|gb|ABK53049.1| Fmu (Sun) domain protein [Acidothermus cellulolyticus 11B] Length = 440 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 112/461 (24%), Positives = 173/461 (37%), Gaps = 43/461 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + N R ++ +L V R+ LL + RD L +V TLR L Sbjct: 1 MMATPNPRQIALDVLGAVRRRDAYANLLLPARLDAAGPAG---RDAALATELVYGTLRLL 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 DAVLD L R ++ +LR+ V Q+L + V +A V +VE A+R Sbjct: 58 GTYDAVLDRCLPRP-DRLHPRVRDVLRLGVHQLLGMRVDPHAAVYESVELARRT-GGAVA 115 Query: 121 AKLVNSILRRVSREKIELLQRIAG-----------ISIIPEWFKERLENFYGKERV--LA 167 A+LVN++LRR++ +E P W + + A Sbjct: 116 ARLVNAVLRRIADRDLESWLAEVTPADDPVAALGLRYGHPRWIVAAFADALRGDLADVRA 175 Query: 168 ISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + A +P + L + T L A + + EG V Sbjct: 176 LLQANNTPAPVHLAARPGRCTVDELLAAGARPGRWAPTAAILDAGAPGRIAAVREGRAGV 235 Query: 226 QDASASIPVQLFGTLNNLSVL-DLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLR 280 QD + + DLCA PGGKTA + GA+V A+D+ R + Sbjct: 236 QDEGSQLVALAAAAPAGAGWWLDLCAGPGGKTALLAAEADRRGARVLAVDLRPHRARLIP 295 Query: 281 CNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + +I D D VLVD PC+ G +RR P++ W R DD+ Sbjct: 296 RD------PRVTVIVADGRRPAWRSGRVDRVLVDVPCTGLGALRRRPELRWRRRPDDVRS 349 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +LL + V+PGG+V ++ CS ++ +VV +V L + Sbjct: 350 LQRLQIELLTAALDAVRPGGLVGYATCSPHPAETIDVVHQVADR---VEVLDAREAMVAH 406 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L P ++++ P D F LRR Sbjct: 407 ARAVPPDLGPGPFVQLWPH--------RHETDAMFFALLRR 439 >gi|257452795|ref|ZP_05618094.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R] gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R] gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R] Length = 440 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 95/443 (21%), Positives = 188/443 (42%), Gaps = 37/443 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L + + L+ + F+ + ++ + + +R +D ++ + Sbjct: 9 ALLQEVDQGKYSNIALNELFHRKVFK---KGEKNFITEVFYGVIRNKIYLDYMISQKVK- 64 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 KK LQQL R+S QI ++ D V+ VE AK+ ++ VN +LR R Sbjct: 65 --EVKKDWLQQLFRLSFYQIRFMKSDDKGVIWEGVELAKKKYG-VSVSRFVNGVLRNFQR 121 Query: 134 EKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----- 182 IE + + P+WF E+++ ER + I + + + V Sbjct: 122 SFIEEEENLKREGREEVLFSYPKWFFEQIKKE-SPERYIEILKSLKRTPLLSVRVNLLKY 180 Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + E + K ++ ++++ F EG VQDA++ + + G Sbjct: 181 SCEEFEEYLRKEEIEIIKKVETVYYMKAGNLLNSSEFQEGKIIVQDAASYLAAKNLGAKP 240 Query: 242 NLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD C+APGGKT+ + + + ++ +LD+ +++ ++ N +L + +++DA Sbjct: 241 GEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGITIVQAVKLDA 300 Query: 299 FDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 K FD +LVDAPCS G + + P+ L+ + ++I + QR++L+ +K Sbjct: 301 RHLSLQGKKFDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVTLQREILMAAAEVLKV 360 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C++ +++E + L + P + ++A G I Sbjct: 361 GGEMVYSTCTILPAENQENAKWFLETHPNFESI-----QLQIPENVAGTYDECGGFSI-- 413 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 D +D F+ + R+ Sbjct: 414 ------DYQEEVVDSFYMIKWRK 430 >gi|311742368|ref|ZP_07716177.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272] gi|311313996|gb|EFQ83904.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272] Length = 428 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 168/457 (36%), Gaps = 56/457 (12%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ H L V + + +L + L RD +V+ T+R DA Sbjct: 4 PVRAIAFHALRAVDERDAYVNLVLPAMLDEHH---LEGRDAAFATELVHGTVRRQGTYDA 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ V L + LR+ Q+L + V +A V V+ +R+ ++ VN Sbjct: 61 IIRQVSGRDLASIDPPVLDALRLGAHQLLSMRVPAHAAVSTTVDVVRREIGHKPV-GFVN 119 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKERVLA--ISDAC 172 ++LRR+ + ++ A + P W L G + A Sbjct: 120 ALLRRIGAQDLDAWVEQVTEGLGPDEALAVRTSHPVWIVRALRTALGGHAAQITKLLTAD 179 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 P + L + + L + R+ + S+P +G VQD + + Sbjct: 180 NVPPRVTLVARPGLCEPESLPGTPGLLSPHARILDEGGDPGSIPEVRDGRAGVQDEGSQL 239 Query: 233 PVQLFGTLN----NLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + LD+CA PGGK A GA + A +V + R E +R + Sbjct: 240 VALALADAPLEGADGRWLDVCAGPGGKAALLGALARERGAVLVANEVQEHRAELVRLGVR 299 Query: 285 RLHLYAEDIIEMDAF-DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 R L ++ D FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 300 R--LDNVEVTVHDGRAGPWEAGSFDRVLVDAPCTGLGALRRRPESRWRRTEADLDLLVPL 357 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL + + V+PGG+VV++ CS +++ +VV V Sbjct: 358 QEELLTRALELVRPGGVVVYATCSPHVRETTDVVTAV--------------------TGG 397 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +S + P + G D F +RR Sbjct: 398 RDDVSVLSTHQWWPHI--------DGTDAMFCALVRR 426 >gi|331697235|ref|YP_004333474.1| Fmu (Sun) domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951924|gb|AEA25621.1| Fmu (Sun) domain protein [Pseudonocardia dioxanivorans CB1190] Length = 482 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 112/464 (24%), Positives = 172/464 (37%), Gaps = 47/464 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+ + LL+ V + + R L + TLR L +DA Sbjct: 37 PARVAAHELLTAVRERDAYANLAMPAILRRHRLRDRDA---ALATELGYGTLRALGLLDA 93 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L R + L LR+ Q+L + +A VD V+ + +R A VN Sbjct: 94 VVAACADRPLHRIEPPLVDALRLGAYQLLRTRIPAHAAVDTIVDLVRDRAGSRS-AGFVN 152 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +ILR+V+ + A + P W + + G L + A Sbjct: 153 AILRKVAEQDEAAWTAQLAPSVEEDPLGHSAFVHAHPRWIAQAFADALGGTAELDAALAA 212 Query: 173 ISPLYIDLTVKFDIETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + + E A +L G+ L+ + + AEG+ VQ Sbjct: 213 DDARPVVHLLARPGEITAEELALVTGGTEAPYSPYGVHLEPGSGDVGDIDAVAEGLAVVQ 272 Query: 227 DASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLE 277 D + + LDLCA PGGK L G + A++ S+ R + Sbjct: 273 DEGSQLVALALARAELAGDDGGRWLDLCAGPGGKAVLLGGLVALDGGALAAVERSEHRAD 332 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 +R + L P FD VLVDAPC+ G +RR P+ W R+ +D+ Sbjct: 333 LVRRAV--DGLPVTVHTADGREAPLPDAAFDRVLVDAPCTGLGALRRRPEARWRRNPEDV 390 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR+LL + V+PGG+V + CS ++ VV VLR VE V + Sbjct: 391 AGLARLQRELLTAALRHVRPGGVVAYVTCSPHLSETVGVVGAVLRRH-RDVEKVDARAVL 449 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D+ + +++ P G D F LRRL Sbjct: 450 PGVPDLGDGPA----VQLWPH--------RHGTDAMFVTLLRRL 481 >gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis] Length = 558 Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 111/482 (23%), Positives = 180/482 (37%), Gaps = 64/482 (13%) Query: 8 RLV-SSHLLSCVMRKRISLTCLLDLEYGDS--------------AFRLLSQRDQILVRAI 52 R + LL + + L + L R+ LV I Sbjct: 91 RAASAVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLGFRTNPLDARNTRLVTDI 149 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110 V +R+ +D ++ + ++ + LQQ+LR+ V +I+ L + YAVV+ V Sbjct: 150 VAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTL 209 Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELL--------------QRIAGISIIPEWFKERL 156 R +VN ILRRV+ ++ + + + ++ P W R Sbjct: 210 -ARAALRAGAGNMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMIRRW 268 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDI-----------ETWAHKLNAVMLPTGGIRL 205 + G+E + + + SP L + + T +RL Sbjct: 269 MTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSRDDLVLLLKKLNVQHELSPHMTEFVRL 328 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 +S++ EG+ VQD A + V + +++D CAAPGGK + Sbjct: 329 STGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGKALFMASRLQG 388 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSST 319 V A+DV++ RL L L D D VL+DAPCS Sbjct: 389 QGSVIAIDVNQGRLRVLEEAAKVQALEGVVNACQDDIRSFAVGASIRADKVLLDAPCSGL 448 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G + + PD+ W R D+ + Q +LL VKPGGI+V+S CS+D +++E V+ Sbjct: 449 GVLCKKPDMRWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTCSVDPGENKERVES 508 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P + +S EG+ P +DG FA L Sbjct: 509 FLTRHPEFIVEA------VHKYVPNEFISEEGFYTSHP--------TKHFLDGAFAARLF 554 Query: 440 RL 441 R+ Sbjct: 555 RV 556 >gi|297537449|ref|YP_003673218.1| Fmu (Sun) domain-containing protein [Methylotenera sp. 301] gi|297256796|gb|ADI28641.1| Fmu (Sun) domain protein [Methylotenera sp. 301] Length = 531 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 101/460 (21%), Positives = 168/460 (36%), Gaps = 57/460 (12%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +LS ++ L + ++ L +++ V V LR L Sbjct: 1 MTPNL-IRQAAV-MLSNLLEFNSPADAKLSEFFRNNR--DLGTKERAFVAESVYGVLRRL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + AV +K L +LR+ ++ + + EQ Sbjct: 57 RFLSAVTANDDNDPDDARKLVLAWMLRI-------QGMSIQKIESMLTEQQIEWAHTIKA 109 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N L A + + +W E+L YG++ L I+ + +DL Sbjct: 110 KSTENLPL--------------AVQADVRDWLWEKLVAQYGEKEALTIARSMHDAATLDL 155 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQD 227 V + K A K I F EG VQD Sbjct: 156 RVNTIKGTRDDVMAKFIAENTSGESNVTKTPYSPIGLRMPLRLNISRHVMFTEGQIEVQD 215 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 + I L + V D CA GGKT + + + ++ A DVS++RL L L Sbjct: 216 EGSQILAHLVAPKRGMMVADFCAGAGGKTLAMGALMRNTGRLYAFDVSEKRLHSLGQRLK 275 Query: 285 RLHLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R L + E D FD VLVDAPC+ GT+RR+PD+ W + D+ + Sbjct: 276 RSGLSNLNAQSISSETDPKLKRLNGKFDRVLVDAPCTGLGTLRRNPDLKWRQTPQDLAEL 335 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L + K GG +++S CSL + ++E++ + L + P L + Sbjct: 336 TVKQANILARASKLTKTGGRLIYSTCSLLRDENEQIAENFLATHPDFKLLNAAEILKQQQ 395 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I++ ++++ P + DGFFA + Sbjct: 396 INLDTGD----YLKLLPHL--------HNTDGFFAAVFEK 423 >gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodococcus equi 103S] gi|311888922|emb|CBH48235.1| putative RNA binding Sun protein [Rhodococcus equi 103S] Length = 437 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 96/451 (21%), Positives = 157/451 (34%), Gaps = 42/451 (9%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V + +L + R L RD L + R +DAV+ Sbjct: 1 MLRAVRERDAYANLVLPGLLRE---RRLDGRDAALATELAYGAARARGLLDAVIAECAGR 57 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L +L + Q+L +A +A V +V+ + + A VN++LRRVS Sbjct: 58 PVEEIDGPLLDVLELGAYQLLRTRIAPHAAVATSVDLVRAEAGP-GKAGFVNAVLRRVSE 116 Query: 134 EKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVL--AISDACISPLYI 178 + + +A P+W + + G + + A + + Sbjct: 117 KTEDEWVARLAPDAVADPVGHLAFRYAHPKWIAQAFADSLGADAAELKDVLVADDARPGV 176 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L + E A + P + L EG+ VQD + + + Sbjct: 177 HLVARPGEISAEELALVTGGEVGPYSPYAVHLDGGDPGLLDAVREGLAGVQDEGSQLVAR 236 Query: 236 LFGTLN-----NLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 LDLCA PGGK A L G LD + + Sbjct: 237 ALTLAPLEGPDTGRWLDLCAGPGGKAALLGALVGIDGGRLDAVEPAEHRADLVRKTTRDL 296 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 D+ D + +D +LVDAPC+ G +RR P+ W R D+ QR+LL Sbjct: 297 PVDVHVADGREPGLDGGYDRILVDAPCTGLGALRRRPEARWRRQPSDVSGLVKLQRELLA 356 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + V+PGG+V++S CS ++ VV +R + ++ Sbjct: 357 SALQLVRPGGVVLYSTCSPHVSETVAVVADAVRRHG--AVALDTRELVPGVPNLGDGP-- 412 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P G D F ALRR Sbjct: 413 --GVQLWPH--------RHGTDAMFMAALRR 433 >gi|77408116|ref|ZP_00784863.1| sun protein [Streptococcus agalactiae COH1] gi|77173300|gb|EAO76422.1| sun protein [Streptococcus agalactiae COH1] Length = 426 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 122/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L V K L+ S LS +D+ LV IV T+ ++ L + Sbjct: 2 TLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWYLSHFI-V 57 Query: 74 SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 + + + LL +S+ Q+LYLD + D+A+V+ AV AK + KL+N++LRRVS Sbjct: 58 DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVS 117 Query: 133 RE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LYIDLTVK 183 E +R + +P W ++L + YG+ R LAI ++ + +T Sbjct: 118 SETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDL 177 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +T LN L + S F +G+ +QD S+ + N Sbjct: 178 SQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPTLKVSGND 237 Query: 244 SVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298 VLD C+APGGKT+ + ++ VTALD+ +LE + N RL L ++DA Sbjct: 238 QVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASK 297 Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 +Y P+ FD +LVDAPCS G IRR PD+ + + D Q +L ++ Sbjct: 298 AHEYFPEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRK 357 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GGI+ +S C++ ++++ +V++K L + P N + + G I I+P Sbjct: 358 GGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKRGCISISP 409 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF ++R+ Sbjct: 410 EQY--------HTDGFFIGQVKRI 425 >gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827] gi|255923533|gb|ACU39044.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827] Length = 478 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 163/459 (35%), Gaps = 42/459 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V ++ +L + R ++ RD L + T R +DA Sbjct: 36 PARRAALDTLRAVTKRDAYANLVLPGLLRE---RRITGRDAALATELTYGTARARGLLDA 92 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL L ++ LR+ Q+L V +A V V+ + D+ + A N Sbjct: 93 VLAACSDRPLAEIDDAVLDALRLGAYQLLRTRVPAHAAVASTVDLVRADRGS-GAAGFAN 151 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF--YGKERVLAISD 170 ++LRRV+ + +A + P W + E + A Sbjct: 152 AVLRRVTGQDEAGWIDEVAPDEESDPIGYLAMSTAHPRWVAQAFAEALGSRGEPLRAALA 211 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP-ESIVSLPGFAEGVWWVQ 226 A + + L + + A + P + L E + VQ Sbjct: 212 ADDTRPIVHLIARPGEISADELAAITGGDLAPYSPYGVHLADGGDPADLDVVRERLAAVQ 271 Query: 227 DASASIP----VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRC 281 D + + + + LDLCA PGGK A L A A D ++ + Sbjct: 272 DEGSQLCALALTRAPLEGTDERWLDLCAGPGGKAALLGALAALSDATLDAVEKTPHRAEL 331 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 D+ D D +D VLVDAPC+ G +RR P+ W R D+ A Sbjct: 332 IRKATIGLPVDVRVADGRDPGLDGGYDRVLVDAPCTGLGALRRRPEARWRRQPSDVAALA 391 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL + V+PGG+V + CS ++ VV +V R + E + + Sbjct: 392 KLQRELLTSALDLVRPGGLVAYVVCSPHLAETVGVVAEVARKTG--AERLDTREFFPGVP 449 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ +++ P G D F LRR Sbjct: 450 NLGDGPQ----VQLWPH--------EHGTDAMFCAILRR 476 >gi|311113844|ref|YP_003985066.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931] gi|310945338|gb|ADP41632.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931] Length = 536 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 98/498 (19%), Positives = 167/498 (33%), Gaps = 67/498 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARLV+ +L+ V + +L L RD + TLR DA Sbjct: 42 PARLVAFEVLNAVAQNDSYANLVLPGTIRAHH---LDHRDAGFATELTYGTLRSQGTYDA 98 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L L + + +LR+ V Q+L + V +A ++ +V A+ A VN Sbjct: 99 ILAHCADRPLEKIGTTTLIVLRMGVHQLLSMRVPAHAALNQSVALARAQIGG-GPANFVN 157 Query: 126 SILRRVSREKIELLQ------------RIAGISIIPEWFKERLENF-----YGKERVLAI 168 ++LRRVS E + A P W + + + Sbjct: 158 AVLRRVSERSREEWYARLEADAKDDTEKFALAKSHPTWIVRSMRQALAAHGRSPAEIQEL 217 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226 +A ++L I + + L EG Q Sbjct: 218 LEADNQAPVVNLIALPGIGDLQEAFEKGAVEGELVEDSALYSAGDLGRLKSVREGTVRAQ 277 Query: 227 DASASIPVQLFGTL----NNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKRRLEK 278 D + + + + + LDLCA P A GA+V A + + R + Sbjct: 278 DVGSQLVTRALAAAPLEGQDSAWLDLCAGPGGKAALLAALGAQRGARVVANESAAHRAKL 337 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAPCSSTGTIR 323 + +L L ++ D + P++ FD VLVD PCS G +R Sbjct: 338 VSQSLRPLSPDEYVVLTGDGREISQTLAQNAERLPAGIEPEQKFDRVLVDVPCSGLGALR 397 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R P+ W + DI QR+LL +PGG++ + CS +++ +V ++L + Sbjct: 398 RRPEARWRKSPRDIADLLPLQRQLLEAACEVTRPGGVIAYVTCSPHAAETQNIVAEILET 457 Query: 384 SPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDM-------------------LEK 422 + + L S + AL+ + P + + Sbjct: 458 GKVRLLDTQSILQRVALPSDEGRSALAGDKAPGYRPQVRLKKSSSVRQEDILDEASTTAQ 517 Query: 423 IDGVSSGMDGFFAVALRR 440 + G D F R+ Sbjct: 518 LWPHIHGTDAMFLALFRK 535 >gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770 [Chlorella variabilis] Length = 425 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 106/437 (24%), Positives = 173/437 (39%), Gaps = 55/437 (12%) Query: 44 RDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYA 102 R V +V+ R+ R+D L +L + + ++ LR+ + ++ L A + Sbjct: 4 RQARGVTELVSGVTRWRRRLDFSLTQLLRGRDVAQLDAPVRNALRLGLYELAELKNATHG 63 Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRR-----------------VSREKIELLQRIAGI 145 V++ V+ K + ++ A N +LR + + +A Sbjct: 64 VINSYVDLVKSVQ-HQGAANATNGVLRNVARGLEAGTLPQPPRPAQGMPPQQAAEVLAVG 122 Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203 + P W +R YG LA+ + L D E + +L A Sbjct: 123 ASHPTWLVQRWLAQYGPAATLALLKHNNMRPRYALRLAPGVDAEAFCRQL-ARSGVQAAP 181 Query: 204 RLKELPESIVSLPGFAEGVWW-------VQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 E + G + QD +A + V ++LD CAAPGGK Sbjct: 182 SRYLPREFVTVDRGLQALLVEGLVQRGEAQDEAAGLVVAALDPQPGETLLDACAAPGGKA 241 Query: 257 ---AQLIVSGAKVTALDVSKRRLEKLRCNLDRL-HLYAEDIIEMD--------AFDYCPK 304 A + +TALD+S+ RL LR R H D P Sbjct: 242 LGAASRMRGRGLITALDLSRSRLAALRHAALRQPHGDMVRTFAADLRRFATLRYRPEGPP 301 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 +D VL+DAPCS TG + + D+ W R +++ + A Q +LL V PGG++V+S Sbjct: 302 WQYDRVLLDAPCSGTGVLAKRADLRWRRTPEELRQLAALQGELLDAAAGLVAPGGLLVYS 361 Query: 365 NCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 CS++++++E+ V L P +E VP + L+P+G +R+ P + Sbjct: 362 TCSIEQEENEQQVAAFLARQPGYELEAVPAGTGVP-----PQCLAPDGCLRMLPHV---- 412 Query: 424 DGVSSGMDGFFAVALRR 440 G DG FA LRR Sbjct: 413 ----HGTDGAFAARLRR 425 >gi|77413313|ref|ZP_00789508.1| sun protein [Streptococcus agalactiae 515] gi|77160627|gb|EAO71743.1| sun protein [Streptococcus agalactiae 515] Length = 426 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 122/444 (27%), Positives = 199/444 (44%), Gaps = 36/444 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L V K L+ S LS +D+ LV IV T+ ++ L + Sbjct: 2 TLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWYLSHFI-V 57 Query: 74 SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 + + + LL +S+ Q+LYLD + D+A+V+ AV AK + KL+N++LRRVS Sbjct: 58 DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVS 117 Query: 133 RE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LYIDLTVK 183 E +R + +P W ++L + YG+ R LAI ++ + +T Sbjct: 118 SETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDL 177 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +T LN L + S F +G+ +QD S+ + N Sbjct: 178 SQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPTLKVSGND 237 Query: 244 SVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298 VLD C+APGGKT+ + ++ VTALD+ +LE + N RL L ++DA Sbjct: 238 QVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASK 297 Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 +Y P+ FD +LVDAPCS G IRR PD+ + + D Q +L ++ Sbjct: 298 AHEYFPEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRK 357 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GGI+ +S C++ ++++ +V++K L + P N + + G I I+P Sbjct: 358 GGIITYSTCTIFEEENFQVIEKFLANHP--------NFEQVELSHTQEDIVKRGCISISP 409 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF ++R+ Sbjct: 410 EQY--------HTDGFFIGQVKRI 425 >gi|94985598|ref|YP_604962.1| NusB/RsmB/TIM44 [Deinococcus geothermalis DSM 11300] gi|94555879|gb|ABF45793.1| rRNA methyltransferase, sun family protein [Deinococcus geothermalis DSM 11300] Length = 427 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 107/435 (24%), Positives = 172/435 (39%), Gaps = 29/435 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ +L+ V+ A L RD L +V TLRF P ++A Sbjct: 10 PARALAVRVLTRVLAGETFAAP---ALDAALAEARLPARDAGLATHLVYGTLRFAPMLEA 66 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L +L + + LL + L L +A + V A+ + LVN Sbjct: 67 ALAPLLR---EKTHSKTRALLLAGAFEKLVLGTPPHAALSEYVNVARMARLAP--PGLVN 121 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 ++LRRV R +P W + YG ++D Sbjct: 122 AVLRRVERPAETE----ETRYALPRWLIDIFRAAYGPRADAVLADQLQPQPLWLSLSDEG 177 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + + V G+ L + + +G + ++ V G + V Sbjct: 178 VRRLEAEGSVVEPGPNGVDRVTLARPLRDTAAYRQGQAQPINPASLSVVDALGEVKGQRV 237 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LDL G K A L GA VT++D+ R+ + R NL RL L+A+ + D Sbjct: 238 LDLAGGAGVKAAMLAARGAHVTSVDLLARKHDAARANLKRLGLHADFL-THDLTRPLEVP 296 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 VL+DAPC+ TGT+R HP++ + + A Q +LL + V+PGG++V+S Sbjct: 297 PAPLVLLDAPCTGTGTLRAHPEIKLRLTPAAVEEMAALQARLLPNAAAVVEPGGLLVYSV 356 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ Q+ +EVV+ L P + S + + + EG + + Sbjct: 357 CSVTPQEGQEVVRAFLAEHPEFM------SEPLSDLGLPTVSAGEGVLTV---------- 400 Query: 426 VSSGMDGFFAVALRR 440 G+DGFF LRR Sbjct: 401 PEDGVDGFFIARLRR 415 >gi|320534324|ref|ZP_08034813.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 171 str. F0337] gi|320133459|gb|EFW25918.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 171 str. F0337] Length = 463 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 105/472 (22%), Positives = 175/472 (37%), Gaps = 54/472 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ V R LL L +RD A+ TLR R DA++ Sbjct: 2 ALEVLTRVRRDDAFANLLLPELLE---TADLDRRDAGFATALTYGTLRLQGRYDAMIAAC 58 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L R ++ +LR+ Q++ + VA +A V V+ A R A VN+++RR Sbjct: 59 TDRPLERIDPAVLDILRLGAHQLMGMRVAQHAAVSTTVDLATTSCG-RGAATFVNAVMRR 117 Query: 131 VSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDACI 173 +S + ++ A PEW + L + + A+ A Sbjct: 118 LSGQDLDSWMAALQQNAPDETSALARTQSHPEWIVKALRQALVTHGRSSDELEALLIADN 177 Query: 174 SPLYIDLTVKF------------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + L + AH + + + + + + Sbjct: 178 TDPEVALCARPGLIAPEALAKVARKADRAHDVEPRPGRISPLAVVMVGGDPGRIEAIRDS 237 Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273 V+D + I + LDLCA PGGK A+ GA++ A +VS Sbjct: 238 RAGVEDEGSQLVALIAAHAPLEGRDERWLDLCAGPGGKAALLAARAAQKGAQLLANEVSP 297 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R + +R L + + D D +D VLVDAPC+ G++RR P+ W Sbjct: 298 HRADLVRSALRAIAPDVVRVRCGDGRDLGRDESGTYDRVLVDAPCTGLGSLRRRPEARWR 357 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPV 388 R D+ A QR+LL + V+ GG+V + CS ++ VV+ ++L + Sbjct: 358 RAPGDVTVLAELQRELLASALRAVRRGGVVTYVTCSPHALETTFVVRDVTRLLEREGLRT 417 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + + A S +++ P + G D F LRR Sbjct: 418 EPLHAGDVATRLAPQPPAGSDRETLQLWPHL--------DGTDAMFCALLRR 461 >gi|296269348|ref|YP_003651980.1| Fmu (Sun) domain-containing protein [Thermobispora bispora DSM 43833] gi|296092135|gb|ADG88087.1| Fmu (Sun) domain protein [Thermobispora bispora DSM 43833] Length = 465 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 93/458 (20%), Positives = 163/458 (35%), Gaps = 47/458 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR+ + LL V + L+ R ++ R+ L + TLR L D + Sbjct: 30 ARIAAYDLLRAVDERDAYANLLMPTLLR---QRKITGREAALATELAYGTLRGLGTYDEI 86 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + L+ +R+ Q+L + +A V ++ + ++ N+ Sbjct: 87 IGACGDRAPGELDPPLRDAIRLGAHQLLRTRIPAHAAVSSTIDLIRLRVGP-GPSRYANA 145 Query: 127 ILRRVSREKIELL-------------QRIAGISIIPEWFKERLENF--YGKERVLAISDA 171 +LR+V+ ++ +A + P W + + A +A Sbjct: 146 VLRKVAGRTLDEWLAIVAPPKEEDPIGHLAVVHSHPRWIVNAFRDALGGDLDETTAALEA 205 Query: 172 CISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + L + + + A +P AEG VQD + Sbjct: 206 DNARPRVALVARPGRCSPDELVAAGAERAAYSPYGCYLTEGDPAEIPAVAEGRAAVQDEA 265 Query: 230 ASIPV---QLFGTLNNLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCN 282 + + + LD+CA PGGK A GA++ A DV R +R Sbjct: 266 SQLVALALTRVPLDEDRRWLDMCAGPGGKAGLLDAIAAERGARLLAADVQHHRARLVRGA 325 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + R + + FD V++DAPC+ G +RR P+ W R DI + Sbjct: 326 VTRAGV----VQADGTAPPWRPGTFDRVMLDAPCTGLGALRRRPEARWRRRPSDIPELTG 381 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR+LL + V+PGG+V + CS ++ VV V +P E++ + Sbjct: 382 LQRRLLASALEAVRPGGVVAYVTCSPHLAETRVVVGDV---APGRAEVLDAREYLPEVPG 438 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + P G D F LRR Sbjct: 439 LGDGP----FAQFWPH--------RHGTDAMFLALLRR 464 >gi|253997585|ref|YP_003049649.1| Fmu (Sun) domain-containing protein [Methylotenera mobilis JLW8] gi|253984264|gb|ACT49122.1| Fmu (Sun) domain protein [Methylotenera mobilis JLW8] Length = 514 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 96/464 (20%), Positives = 172/464 (37%), Gaps = 63/464 (13%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +LS ++ L + ++ L +++ V V LR L Sbjct: 1 MTPNL-IRQAAI-VLSNLLTFSSPADAKLSEFFRNNR--DLGTKERAFVAESVYGVLRRL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLR---VSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + V +K L LLR +S+ ++ +++ ++ + Sbjct: 57 RFLSTVTANDENDPDDARKLILAWLLRVQGMSIREL-------EPMLNEQQKEWAHLIKA 109 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + L ++ + + +W ++L YG+ L I+ + Sbjct: 110 KSTDNLPLAV-----------------QADVRDWLWDKLVAQYGEAEALTIARSMHEQAT 152 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGI----------RLKELPESIVSLPGFAEGVWW 224 +DL V + K A +I F EG Sbjct: 153 LDLRVNTIKGTRDEVLAKFIAENTSGETNVTKTPYSPLGIRMPNRMNIGRHVLFTEGKIE 212 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 VQD + + L + V D CA GGKT + + + ++ A DVS++RL L Sbjct: 213 VQDEGSQLLAHLVAAKRGMMVADFCAGAGGKTLAIGALMRNTGRIYAFDVSEKRLHNLGQ 272 Query: 282 NLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L R L E D FD VLVDAPCS GT+RR+PD+ W + +D+ Sbjct: 273 RLKRSGLSNLNAQVISSETDPKLKRLNGKFDRVLVDAPCSGLGTLRRNPDLKWRQTPEDV 332 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q +L + K GG +V++ CSL ++E++ ++ L + P L Sbjct: 333 AELNVKQTNILARAAKLTKVGGRLVYATCSLLSDENEKIAEQFLATHPDFKLLNAAEILA 392 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I++ ++++ P + DGFFA ++ Sbjct: 393 QQQIELDTGD----YLKLLPHL--------HNTDGFFAAVFEKM 424 >gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum ATCC 33209] gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum ATCC 33209] Length = 458 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 170/468 (36%), Gaps = 48/468 (10%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 V+ +L V + +L + L +RD L + LR DA++ Sbjct: 2 VAFEVLRAVSKDNAYANLVLPARIRQNR---LDKRDAGLATELCYGALRGKGTYDAIIAS 58 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + L ++ LR+ Q+L + + +A V+ V A+ A +N++LR Sbjct: 59 CVDRPLAEVDEAILDALRLGSHQLLAMRIPPHAAVNQTVGLARAVIG-AGPASFINAVLR 117 Query: 130 RVSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDAC 172 +++ + + A PEW L + A+ +A Sbjct: 118 KIAAKDLAEWLDELTAGVTDQVKVAAIRQAHPEWIVRALRQSLVAHGRPVTEIDALLEAD 177 Query: 173 ISPLYIDLTVKFDIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + ++L + + A +A P L EG+ VQD + Sbjct: 178 NAAPVVNLVALPGLGSPAEAFDADFTPGPLAVDSALSSGSDPGRLQSICEGIVRVQDVGS 237 Query: 231 S-------IPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKL 279 LDLCA PGGK A L GA + A + ++ R E + Sbjct: 238 QLVARALASAPVHTKDSAAEKWLDLCAGPGGKAALLAALAAQRGATLLANEPAEHRAELV 297 Query: 280 RCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R L + A + D + FD +L+DAPCS G +RR P+ W R ++ Sbjct: 298 RKALAAVPNTAWKVQVGDGRQIGTSQPETFDRILIDAPCSGLGALRRRPESRWRRTPAEV 357 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + + QR+LL G+ +KPGG++ ++ CS ++ V+ VLR L Sbjct: 358 AELSQLQRELLTAGLEALKPGGVLAYATCSPHPAETIAVITDVLRKRDDLALLDAGEVID 417 Query: 398 WKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + PE + ++ P + D F + + Sbjct: 418 GVALKPLDSAHPEPGLGKTSQLWPHL--------HATDAMFLALISKK 457 >gi|289705544|ref|ZP_06501936.1| putative ribosomal RNA small subunit methyltransferase B [Micrococcus luteus SK58] gi|289557773|gb|EFD51072.1| putative ribosomal RNA small subunit methyltransferase B [Micrococcus luteus SK58] Length = 543 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 109/492 (22%), Positives = 172/492 (34%), Gaps = 66/492 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR V+ ++ V + +L + L +RD + TLR L Sbjct: 60 RTSDPARRVAFGVVRAVHAEDAYANLVLPARIRQAR---LDRRDAGFATELAYGTLRGLG 116 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 DA+L + L + + LR+ Q+L + V +A +D V + + + Sbjct: 117 LYDAILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEIG-AGAS 175 Query: 122 KLVNSILRRVSREKIELLQRI-----------AGISIIPEWFKERLEN-----------F 159 VN++LRRV+ +E A + P W L Sbjct: 176 GFVNAVLRRVAERPLEEWLADVAPADGGDAALAVRASHPVWIVRALRQALAAHRGTRHIA 235 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK-----ELPESIVS 214 + A+ +A +P ++L A+ RL Sbjct: 236 DRDAELAALLEADNAPPVVNLVALPVAGGAEALAAALDDGAEPGRLAPDSALHSGGDAGR 295 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNL-------SVLDLCAAPGGKTAQLIV----SG 263 LPG EGV VQDA + + + LDLCA PGGK A L G Sbjct: 296 LPGVREGVLRVQDAGSQLTARALAQAPVPAAAGRAERWLDLCAGPGGKAALLAALAAERG 355 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCSST 319 A + A +V+ R + +R L + A + D FD VLVDAPC+ Sbjct: 356 ATLVANEVAPHRADLVRQALAAVPADAWTVRVGDGRTIADAPEAASAFDRVLVDAPCTGL 415 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G +RR P+ W R D+ + Q +LL ++ + PGG++ + CS ++ VQ Sbjct: 416 GALRRRPESRWRRTPADLAELTGLQAELLDAAVTVLAPGGVLAYVTCSPHVAETVVQVQD 475 Query: 380 VLRSSP-----------IPVELVPLNSAYWKSIDMAMALS-PEGWIRITPDMLEKIDGVS 427 ++R P V L L + ++ P Sbjct: 476 LVRRHPELELLDAGTALDAVALDDLRLDEAEPAGGPEPGDVVAHTAQLWPH--------R 527 Query: 428 SGMDGFFAVALR 439 G D F LR Sbjct: 528 HGTDAMFLALLR 539 >gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 104] gi|118164581|gb|ABK65478.1| Fmu protein [Mycobacterium avium 104] Length = 439 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 102/457 (22%), Positives = 165/457 (36%), Gaps = 51/457 (11%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V + L + R ++ RD + T R +DAV+ Sbjct: 1 MLRAVSERDAYANLALPALLRE---RGITGRDAAFATELTYGTCRTRGLLDAVIGAAAGR 57 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 L LLR+ Q+L V +A V VEQA + + A VN +LRR++ Sbjct: 58 PPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQA-AIEFDSARAGFVNGVLRRIAG 116 Query: 134 EKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLA--ISDACISPLYI 178 A + P W + + G + + + Sbjct: 117 RDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLASDDERPQV 176 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L + A + + + L +G+ VQD + + + Sbjct: 177 HLAARPGALTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQDEGSQLVAR 236 Query: 236 L----FGTLNNLSVLDLCAAPGGKT--------AQLIVSGAKVTALDVSKRRLEKLRCNL 283 + LDLCA PGGKT + +VTA++ + RR + + N Sbjct: 237 ALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSGPQFRVTAVEPAPRRADLVVENT 296 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L +++ +D + FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 297 R--GLP-VEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPGDVPTLTKL 353 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR+LL I+ +PGG+V+++ CS ++ VV LR P V + + D+ Sbjct: 354 QRELLGAAIALTRPGGVVLYATCSPHLAETVGVVADALRRHP--VSALDARPLFEPVADL 411 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P G D FA ALRR Sbjct: 412 GDGPH----VQLWPH--------RHGTDAMFAAALRR 436 >gi|288958791|ref|YP_003449132.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510] gi|288911099|dbj|BAI72588.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510] Length = 474 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 165/454 (36%), Gaps = 35/454 (7%) Query: 1 MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + LL+ + ++ + + + + +D+ + + LR Sbjct: 10 MTP--AARLQAVIDLLTEIDETPRPADAVMSAYFRNRRY--IGSKDRTAIAQMAYAILRR 65 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV--DLAVEQAKRDKEN 117 R+ ++ R + L +L + V+ + A + Sbjct: 66 HARLGWWIER---GGYERATPRARVL----AYLLLEENRNAGVVLEMFSGGKFAPARLTD 118 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA---CIS 174 A + + ++ R+ + L + +G E + A Sbjct: 119 DELALVRALESHTMDHPEMPETVRVECPDWAEAPMRASLGDRFGVEMEKLLEAAPLDLRI 178 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIP 233 ++ A + + L+ + S+ F +G+ +QD + + Sbjct: 179 NPLKANQQSAIKALAKAQITAEVTRWSPLGLRVKGRPPLGSVDAFKDGLVEIQDEGSQMV 238 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V+D CA GGKT + + + +V A DV +RL++ R L+ Sbjct: 239 ALAVAPKPGHQVVDFCAGAGGKTLAVAALMKNKGRVVACDVLDKRLKRAAERFRRAGLHN 298 Query: 291 EDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + E D + K+ FD VLVDAPCS TGT RR+PD W + + + Q Sbjct: 299 IEAHPLTSERDPWVKRHKRKFDRVLVDAPCSGTGTWRRNPDARWRQLGPGLEQLLPLQAN 358 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L VKPGG ++++ CSL ++E V+ L++ + V + W + Sbjct: 359 ILDSAARLVKPGGRLIYATCSLLHDENEAQVEAFLQTHHDFI--VKPIAEVWAEEEAGPP 416 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++R+TP DGFFA L R Sbjct: 417 PVEGPYLRLTP--------ARHDTDGFFAAVLER 442 >gi|257466839|ref|ZP_05631150.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 440 Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 95/443 (21%), Positives = 188/443 (42%), Gaps = 37/443 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L + + L+ + F+ + ++ + + +R +D ++ + Sbjct: 9 ALLQEVDQGKYSNIALNELFHRKVFK---KGEKNFITEVFYGVIRNKIYLDYMISQKVK- 64 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 KK LQQL R+S QI ++ D V+ VE AK+ ++ VN +LR R Sbjct: 65 --EVKKDWLQQLFRLSFYQIRFMKSDDKGVIWEGVELAKKKYG-VSVSRFVNGVLRNFQR 121 Query: 134 EKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----- 182 IE + + P+WF E+++ ER + I + + + V Sbjct: 122 SFIEEEENLKREGREEVLFSYPKWFFEQIKKE-SPERYIEILKSLKRTPLLSVRVNLLKY 180 Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + E + K ++ ++++ F EG VQDA++ + + G Sbjct: 181 SCEEFEEYLRKEEIEIIKKVETIYYTKAGNLLNSSEFQEGKIIVQDAASYLAAKNLGAKP 240 Query: 242 NLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD C+APGGKT+ + + + ++ +LD+ +++ ++ N +L + +++DA Sbjct: 241 GEIVLDTCSAPGGKTSVLAEAMKNEGQILSLDIHTHKIKLIQENCKKLGITIVQAVKLDA 300 Query: 299 FDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 K FD +LVDAPCS G + + P+ L+ + ++I + QR++L+ +K Sbjct: 301 RHLSLQGKKFDRILVDAPCSGYGVLAKKPEGLYNKKEENIKELVTLQREILMAAAEVLKV 360 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C++ +++E + L + P + ++A G I Sbjct: 361 GGEMVYSTCTILPAENQENAKWFLETHPNFESI-----QLQIPENVAGTYDDCGGFSI-- 413 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 D +D F+ + R+ Sbjct: 414 ------DYQEEVVDSFYMIKWRK 430 >gi|111224598|ref|YP_715392.1| hypothetical protein FRAAL5224 [Frankia alni ACN14a] gi|111152130|emb|CAJ63857.1| conserved hypothetical protein [Frankia alni ACN14a] Length = 497 Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 99/490 (20%), Positives = 158/490 (32%), Gaps = 72/490 (14%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL++ +L V + LL S L RD+ V + LR +D + Sbjct: 21 PRLLAWEVLRAVDERGSYANLLLPSLLAGS---GLPARDRGFVTELAYGALRAQGTLDGL 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF------ 120 LD + L+ LR+ Q+L V A V V+ + R Sbjct: 78 LDTATSRPVHDIDPPLRDALRLGAYQLLRTRVPARAAVASTVDLVRATSGERPVRFANAV 137 Query: 121 ----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAI 168 + L R + + + +A ++ P W E + + A Sbjct: 138 LRRVATRIAETGGDLATLLGAPRFETDPIGHLAVVTTHPRWIVEVVAEALGDDLDETRAA 197 Query: 169 SDACISPLYIDLTVKFDI--------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 A + + L + E L+A P ++ LP A Sbjct: 198 LVADDTRPAVHLVARPGRTDQNRLLAEAAEEGLDAAAGPYSPYAVRLDGGDPARLPAVAS 257 Query: 221 GVWWVQDASASIPVQLFGT-----LNNLSVLDLCAAPGGKT----------------AQL 259 G VQD + + + +DLCA PGGK Sbjct: 258 GAAAVQDEGSQLVALALARTPTVGRDRGLTVDLCAGPGGKAALLAGLLTDRSGGGPGFSS 317 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--------EDIIEMDAFDYC-PKKLFDAV 310 + A S L L R L A ++ D P D V Sbjct: 318 QPAAPAGLAAPGSGATLLALEPRATRAGLVARSLAGEPRAWVVRADGRAAPLPAGSADRV 377 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVD PC+ G +RR P+ W R D+ Q LL+ + V+PGG+V ++ CS Sbjct: 378 LVDVPCTGLGALRRRPEARWRRIPGDLAALVPLQSALLVAALDLVRPGGVVAYATCSPHP 437 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++ EVV++V + V ++ + + ++++ P G Sbjct: 438 AETVEVVRQVTGQR-VDVSVLDARLGLPEVDGLGSGP----FVQLWPH--------RHGT 484 Query: 431 DGFFAVALRR 440 D F LRR Sbjct: 485 DAMFVALLRR 494 >gi|152966927|ref|YP_001362711.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216] gi|151361444|gb|ABS04447.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216] Length = 486 Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 103/469 (21%), Positives = 175/469 (37%), Gaps = 46/469 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 +R V+ +L V +L D R L+ RD + LR DA Sbjct: 28 ASRKVAYEVLRAVSADDAYANLVLPRMLRD---RRLNGRDAAFATELAYGVLRGRGTYDA 84 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L ++ L + +LR+ + Q+L + V D+A V +V A+ A L+N Sbjct: 85 LLATLVDRPLAELDAGVLDVLRMGLHQLLAMRVPDHAAVATSVALARNVVGG-GPAGLIN 143 Query: 126 SILRRVSREKIELL-----------QRIAGISIIPEWFKERLENF-----YGKERVLAIS 169 ++LR + ++ +A P+W L + + + Sbjct: 144 AVLRSAAGRDLDTWVAEVATTGNEDDDLAVRYSHPQWIVRSLREALRAHGHEAAELTDLL 203 Query: 170 DACISPLYIDLTVKFDIET------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 A +P + + + A L V ++ + L EG Sbjct: 204 VADNTPAQVAVAALPGLSEPADLVRRASFLEVVPGRWSATAVQLVHGDPGQLSLVREGRA 263 Query: 224 WVQDASASIPVQLFGTL----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRR 275 VQD + I QL + LDLCA PGGK A GA++TA++V+ R Sbjct: 264 RVQDEGSQIVAQLLAAAALEGRDERWLDLCAGPGGKAALLAATAAQRGARLTAVEVAPHR 323 Query: 276 LEKLRCNLDR-LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 E +R L + + +D VLVDAPC+ G +RR P+ W R Sbjct: 324 AELVRSALAAVPGGAEVRVGDGREVGADEPAAYDRVLVDAPCTGLGALRRRPEARWRRTP 383 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPVELV 391 D+ QR LL + V+PGG+V ++ CS ++ VV ++ + V+ + Sbjct: 384 ADLGALGPLQRDLLASALDAVRPGGVVAYATCSPVLSETRLVVDDAVKAAAKRGVVVQRL 443 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + + + +++ P + G D LRR Sbjct: 444 DTPAVLEQVVPGMPSAAAGRAVQLWPH--------THGTDAMHVALLRR 484 >gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium periodonticum ATCC 33693] gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium periodonticum ATCC 33693] Length = 434 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 100/452 (22%), Positives = 196/452 (43%), Gaps = 38/452 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+ + V+ L+ + K +L+ + + F + +++ + I LR +D Sbjct: 1 MSVKYVAMKLI-AFVDKGSYSNIVLNDAFREFHF---TAKEKAFITEIFYGVLRNKNFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ Q+ ++ VV A E AK+ +K + Sbjct: 57 YMIEKNTKV---IKKEWIRNLLRISIYQLTFMSSDAKGVVWEATEIAKKH--GIAISKFI 111 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + IP++F + LE YG E + + Y+ Sbjct: 112 NGTLRNYLRNKDLEIKKLHDEKNYEILYSIPKYFCDILEKQYGSENLKQAITSLKKIPYL 171 Query: 179 DLTVK------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 + V + E + + + ++ I++ F EG QDAS+ + Sbjct: 172 SVRVNKLKYSEEEFEEFLKERDIQIIKKVDSVYYINSGLIINSKEFKEGKIIAQDASSYL 231 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + G N VLD+CAAPGGKTA + + + +V A+D+ + + + + N+ +L + Sbjct: 232 AAKNLGAKPNELVLDICAAPGGKTAVLAEEMQNKGEVIAIDIHQHKKKLIEENMKKLGIN 291 Query: 290 AEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +D + FD +LVD PCS G IR+ P++L+T++ ++I + A Q ++L Sbjct: 292 IVKATILDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLEIL 351 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +++S C++ Q++ + +++ L+ A +++ Sbjct: 352 NSAADILKDGGELIYSTCTIISQENTDNIEQFLKERKEFKV-----KALNIPENVSGEYD 406 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I + MD F+ + L + Sbjct: 407 KLGGFSI--------NYREEIMDNFYIIKLVK 430 >gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989] gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989] Length = 397 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 91/439 (20%), Positives = 174/439 (39%), Gaps = 48/439 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R L V+ K + L + ++D+ L I T++ A Sbjct: 2 RKWIWKALDEVVNKDVYSNLYLRNHL-----HEVDEKDRALATRIFYGTIQNYRYCKACW 56 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + L + LL +S Q+L+LD V YA+V+ AV AK+ N +A L N+ Sbjct: 57 SKYVKNKL---NPKMDVLLTMSTYQLLFLDKVPSYAIVNDAVNIAKKI--NMKYAGLTNA 111 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTVKFD 185 +L +V + + + A +P+W + + YG+E+ L ++ A + Sbjct: 112 VLHKVKPIETDNM---ALKYSLPDWLYKMWTSQYGQEKALVMAKASVNILPMYVRRNVLN 168 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L+ + + + + + + +G QD + + N + Sbjct: 169 TNESDFDLDMFVRVQDALYIYKGNDYFH-HDYYQKGYMSAQDEGSFEIAKFVDPQENERI 227 Query: 246 LDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CAAPG K+ +++ + + A D+ R + + + RL + DA ++ Sbjct: 228 LDCCAAPGTKSMAMAEMMHNKGHIDAYDLHAHRKDLIENDAKRLGIDIIHAGVQDATEFK 287 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 ++D +L D PCS G + R PD+ +D+ Q +L +VK GG +V Sbjct: 288 SSNMYDRILCDVPCSGYGVLSRKPDIKLHMVPEDMDTLIPLQYSILNNVCQYVKVGGTLV 347 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+++K+++E+ ++K L++ LV + + + Sbjct: 348 YSTCTMNKKENEKQIEKFLKAHK-EFSLVEEKTIFSNATQ-------------------- 386 Query: 423 IDGVSSGMDGFFAVALRRL 441 DGF+ L R Sbjct: 387 --------DGFYMAKLVRK 397 >gi|114328418|ref|YP_745575.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114316592|gb|ABI62652.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 452 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 143/438 (32%), Positives = 222/438 (50%), Gaps = 27/438 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + LL+ V+ + SL L+ A + RD+ + TLR L IDA Sbjct: 34 PTRDAACRLLNAVLEQHRSLEEALN------ALPPMEPRDRAAAHRLAAATLRRLGTIDA 87 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL+ L P ++ +LR+ A +L+LD +A V AV+ A++ + F L+N Sbjct: 88 VLEPFLRREPP---APVRDILRLGAAGLLFLDTPPHAAVGTAVDLARQLRL-APFTGLIN 143 Query: 126 SILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LR+V+ E+L + P W AI+ A + +DLT++ Sbjct: 144 AVLRKVATGGQEMLNGLDSPRLDTPGWLWTAWGRD-----ARAIALAHQTEAPLDLTLRP 198 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 I A ++LP G IRL + LPGF EG +WVQDA+AS+P +L Sbjct: 199 GITPPAE---GILLPNGTIRLPPGT-RVSILPGFEEGAFWVQDAAASLPARLLAAREGEK 254 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP 303 ++DLCAAPGGKTAQL +SGA+V A++ R+ +LR NL RL L + + + Sbjct: 255 IVDLCAAPGGKTAQLAMSGAEVIAVEREAVRVPRLRENLARLRLDVQVAVADAAEWTPPA 314 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + DA+L+DAPCS+TGTIRRHPDV + DI Q +LL ++ ++PGG +++ Sbjct: 315 GFVPDAILLDAPCSATGTIRRHPDVPHLKRQRDITALTAQQDRLLAAALAMLRPGGRLIY 374 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM---L 420 + CS+ ++ + ++ L++ P V L P + A + EG++R P + Sbjct: 375 AVCSMQPEEGRQRIEHALKTLP-SVTLSPFTVEELAFLPGAR--TAEGYLRTHPGLAFAG 431 Query: 421 EKIDGVSSGMDGFFAVAL 438 + +GMDGFFA L Sbjct: 432 PEGSPPITGMDGFFAARL 449 >gi|271964331|ref|YP_003338527.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium roseum DSM 43021] gi|270507506|gb|ACZ85784.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium roseum DSM 43021] Length = 515 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 105/476 (22%), Positives = 159/476 (33%), Gaps = 59/476 (12%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + LL V + L+ + R LS RD L + TLR L D V Sbjct: 56 ARNAAYDLLRAVDERDAYANLLMPALLRE---RRLSGRDAGLATELAYGTLRGLGTYDEV 112 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + L +R+ V Q+L V +A V V+ + +K N+ Sbjct: 113 IAACSDRAPEDLDPPLLDAIRLGVHQLLKTRVPPHAAVGTTVDLVRLRVGT-GASKYANA 171 Query: 127 ILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFY--GKERVLAISDA 171 +LR+V+ +E +A P W + + + A+ A Sbjct: 172 VLRKVAGRSLEQWLPIVAPDAGEDPVGYLAVAHSHPRWIVTAMRDAVGGDFDETAALLAA 231 Query: 172 CISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + L + + L A S+ AE VQD + Sbjct: 232 DNERPRVTLVARPGRASVDELLASGAQRAEYSPYAAYLTEGDPGSIRAVAEARAAVQDEA 291 Query: 230 AS----IPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKVTALDVSKRR--- 275 + ++ + LDLCA PGGK +G A S Sbjct: 292 SQLVALALTRVPVAGGDTRWLDLCAGPGGKAGLLDAIAVHGGGAGLPDGASGGSPGPVGF 351 Query: 276 ----------LEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRR 324 L+ R L R +I D +FD V+VDAPC+ G +RR Sbjct: 352 PGGANLLAAELQYHRARLVRQTTREAAVITADGTAPAWRPGVFDRVMVDAPCTGLGALRR 411 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P+ W RD + QR+LL + V+PGG+V + CS ++ VV VL Sbjct: 412 RPEARWRRDPRSLPDLGRLQRELLTSALEAVRPGGVVAYVTCSPHLAETATVVGDVL-RG 470 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VE + + + + + P G DG F LRR Sbjct: 471 RDDVETLDARAYLPEVAGLGEGPHA----QFWPH--------RHGTDGMFLALLRR 514 >gi|83591583|ref|YP_425335.1| tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] gi|83574497|gb|ABC21048.1| tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170] Length = 454 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 113/464 (24%), Positives = 181/464 (39%), Gaps = 45/464 (9%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + LL + + F + +D+ V A+ TLR Sbjct: 1 MTP--AARVQCAIDLLVDIDATNRPADGIASAFVRARRF--MGSKDRRAVTALAWSTLRH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+ ++D + + + LL V + V + + + Sbjct: 57 RARLSWLIDRFGGTP-KARALVIAHLLVV--------ERQSAEDVR-MLFITRAQHAPQP 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYI 178 ++ ++ + +E + A + +P+W LE +G ER+ A + + Sbjct: 107 LTDAEERLVDGLAGKPLEFREMPADVRLEVPDWLPPLLEPLFG-ERLEDELRALQAEAPL 165 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 DL V D E+ L + T L ++ F +G+ VQD Sbjct: 166 DLRVNALKSDRESARLALAREQVDTRPGALSPCALRAEGRPNVAITAPFCDGLVEVQDEG 225 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + L +SVLDLCA GGKT A + + + A D+S+ RL + + L R Sbjct: 226 SQMVALLCAVAPGMSVLDLCAGAGGKTLALAAGMENKGTLVATDISEGRLARAQTRLQRA 285 Query: 287 HLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 ++ +D + K FD VLVDAPCS TGT RR+PD W D I Sbjct: 286 GVHNVTRKVLDPETRKWLKRRKASFDVVLVDAPCSGTGTWRRNPDARWKLTPDTISALNA 345 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q LL + + VKPGG +V++ CSL ++E + L +P+ + K Sbjct: 346 EQSALLDRAAALVKPGGRLVYATCSLLPAENEAQIAAFLERR-DDYRALPVAETWAKVSP 404 Query: 403 MAMALSPE-GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + W+R+TP S G DGFF L R QP+ Sbjct: 405 APYPGAADVSWLRLTP--------ASHGTDGFFVSILER--QPR 438 >gi|217077823|ref|YP_002335541.1| sun protein [Thermosipho africanus TCF52B] gi|217037678|gb|ACJ76200.1| sun protein [Thermosipho africanus TCF52B] Length = 415 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 183/437 (41%), Gaps = 34/437 (7%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++ LL R+ I + ++ + ++ LR +D ++D Sbjct: 6 IAYRLLRKKFRRGIFSSEFYQAFSY--------VEEKAFFKNLIFGVLRKQEYLDWIIDS 57 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L S++ +LR+ Q+++ + Y+VV+ VE ++ + F LVN++LR Sbjct: 58 YLKK--RDIPPSIRTILRIGAYQLIFTNKPSYSVVNNCVELVEK----KSFRGLVNAVLR 111 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI--- 186 ++++ + + P+W E + F + +L + + PL V Sbjct: 112 KIAKIGYIEPKELHLKYSHPKWLIEYWKTFLPNDYLLEMLEYNQKPLKTTARVNMRKINR 171 Query: 187 -ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + GI + L + L + G Q S+ I L + +V Sbjct: 172 KDLVLENITFAPHSPVGIIFERLETNPWELEEYKNGYITFQSESSQIIPLLVNYESKENV 231 Query: 246 LDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 LD CAAPGGK + +S + D K ++ L +RL L + I+ DA + Sbjct: 232 LDACAAPGGKATHILEISDVNLYVNDYEKSKISILEEQFERLGLSPKRIMCEDASNLKLD 291 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 LFD + VDAPC+S GT RR+P+VL + ++I++ + Q+K++ ++ G++++S Sbjct: 292 NLFDKIFVDAPCTSLGTGRRNPEVLRRQSKNNILELSKLQKKIVSNLWKYLNKFGLLIYS 351 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 C++ +++ +VV++ S Y + +D+ L I Sbjct: 352 TCTVTYEENTQVVKEF--------------SRYAEFVDIREKLEKFNIKYIWDGYGALFY 397 Query: 425 GVSSGMDGFFAVALRRL 441 + F+ LR++ Sbjct: 398 PDETLTP-FYVSILRKV 413 >gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii] Length = 476 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 111/472 (23%), Positives = 186/472 (39%), Gaps = 62/472 (13%) Query: 15 LSCVMRKRISLTCL-------LDLEYGDSAF------RLLSQRDQILVRAIVNVTLRFLP 61 L + L LD E L + LV V +R+ Sbjct: 17 LMRIEMGGAFSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWKK 76 Query: 62 RIDAVLDFVLISS---LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D V+ V R + L+Q+LR+ ++L L+V YAVV+ AV+ A Sbjct: 77 YLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLEVPAYAVVNEAVKLANAASR-A 135 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI--------------SIIPEWFKERLENFYGKER 164 KL N++LR V+ K + + + P W R + YG E Sbjct: 136 GAGKLANALLRAVASHKEKNTLPVPEVIGNLRSQARALGTIHSHPVWMVRRWTDRYGTED 195 Query: 165 VLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPT-------GGIRLKELPESIV 213 L + + + + L + +L + + +R+ + ++ Sbjct: 196 TLKLMEWNNTRPFYALRANNATGTSRDDLIEQLKKLEVSYVKSPLLEDFVRVTSGLQEVL 255 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALD 270 +G VQD S + V+L V+D CAAPGGK+ + KV A+D Sbjct: 256 RSGLIQQGRCTVQDESGGLVVELLDPQPGDLVIDCCAAPGGKSLYIASRLKGKGKVIAVD 315 Query: 271 VSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPD 327 ++K RL+ L+ + + + + +DA D K D VL+DAPCS G + + D Sbjct: 316 INKARLQLLKDSAKKAGVSEQVSVYNVDARDMIRGKTGLADRVLLDAPCSGLGVLSKRAD 375 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R + + Q +LL V+PGG++V+S CS++ ++ + + L + Sbjct: 376 LRWRRTLESFEELTKLQDELLDGACKMVRPGGVLVYSTCSIEPDENIDRITSFLARNQNF 435 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + L PL + + +S EG P + G+DG FA LR Sbjct: 436 I-LEPLEREVPREM-----VSREGCFYSLP--------YTHGIDGAFAAKLR 473 >gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE] gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE] Length = 477 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 97/470 (20%), Positives = 167/470 (35%), Gaps = 45/470 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R ++ L V + +L + + RD L +V TLR D Sbjct: 20 PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDGRDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + ++ + V Q+L + +A V +VE A+ AK V Sbjct: 80 AIVAACVDRPLREVDPPVLDVIEMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+VS ++ + ++ + P W L + G R + Sbjct: 139 NAVLRKVSAHDLDGWLERVAPAYDEDAEEHLSVVHSHPRWVVSALWDALGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 +A + L + + + +L EG Sbjct: 199 EADNERPEVTLVARPGRSTTDELLAALGEESGLAGRWSPYAVRMAEGGEPGALTAVQEGR 258 Query: 223 WWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278 VQD + + + LD CA PGGK A L A A ++ + Sbjct: 259 AGVQDEGSQLVAAALAQAPVEGRDSRWLDGCAGPGGKAALLGALAAARGATLLAAEKQPH 318 Query: 279 LRCNLDR-----LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 ++R + + + P FD VL+D PCS G +RR P+ W R Sbjct: 319 RARLVERALAGNPGPHQVITADGTRPPWRPGS-FDRVLMDVPCSGLGALRRRPEARWRRR 377 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVP 392 D+ A QR LL + + V+ GG+V ++ CS ++ VV+ VL+ E Sbjct: 378 PQDLESFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGASAEAEW 437 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +++ A+ P+ I++ P + G D + LRR Sbjct: 438 VDARPLLPGVPALGDGPD--IQLWPHL--------HGTDAMYLALLRRTA 477 >gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus duerdenii ATCC BAA-1640] Length = 425 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 109/457 (23%), Positives = 186/457 (40%), Gaps = 58/457 (12%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 M+ R + +L V L+ L+ ++ L+R I +LR + Sbjct: 8 SMSVRREALQILKNV-SSGAFLSEELNKSRSEN---------IALLRNITTGSLRNKTYL 57 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D ++ + ++ +L +S+ Q ++LD + DY +VD AV+ K+ ++ Sbjct: 58 DYLIKKNSKIRFKKIHEDIRIILEMSLYQYIFLDGIPDYTIVDEAVKLTKKV-SHKGSVG 116 Query: 123 LVNSILRRVSREKIEL-----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 VN +LR R K +PE + + LE Y K+++ I + Sbjct: 117 FVNGLLRNFMRTKDFEVDLKGKDYYLTRYSVPEKYFDYLEKNYSKDKLEEILKLNNTDDN 176 Query: 178 IDLTVKFD---IETWAHKLNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDAS 229 + F + L + + E P+ I F G ++VQD+ Sbjct: 177 FTIRANFTKLTRDELIKSLGVKYNVRKDMLTKSGIIVEDPKDIFKTDEFKNGKFYVQDSG 236 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + +L + VLD+CA PGGKT ++ +V A D+ + RL Sbjct: 237 SILISELLNPKEDSLVLDMCANPGGKTTHLLEILNKTGRVVAWDIKDMVELRENAK--RL 294 Query: 287 HLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L +I DA Y K FD VL+DAPCS+ G IRRHP++ + D+ C Q Sbjct: 295 GLSNLEIETRDATIYDEKYNEKFDYVLLDAPCSAIGLIRRHPEIRY--KEVDLESITCVQ 352 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 KLL ++KPGG++++S CS+ ++++E +V K L + ++ +K+ Sbjct: 353 EKLLDNAGKYLKPGGLLMYSTCSVLEEENENIVDKFLEKNRDFEKIKTFGKDTFKTDATM 412 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A DGF LRR+ Sbjct: 413 EA------------------------DGFSISLLRRI 425 >gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp. oral taxon 078 str. F0262] gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp. oral taxon 078 str. F0262] Length = 427 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 101/453 (22%), Positives = 181/453 (39%), Gaps = 69/453 (15%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + +L + K L E S ++ + +RD+ + +VN T+ +D Sbjct: 19 PRNTALSILFDIFEKGKHSHIALREEL--SKYKAMPERDRAFLTRLVNGTVERSVTLDYF 76 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 LD + + + L+ LLR+ QIL+ D V D A V+ +V+ + R + + VN Sbjct: 77 LDRCSRLKVKKMRPLLRTLLRMGSFQILFSDRVPDSAAVNESVKLSHR-RGLSGLSSFVN 135 Query: 126 SILRRVSREKIEL--------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 ++LRR+S EK + +PEW L + YG+E ++ +S Sbjct: 136 AVLRRISGEKESILRLLREEGEIPEYVRFSLPEWLYRFLLSEYGREETERMAAYFLS--- 192 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + + + R + ++ F G +QD S+ L Sbjct: 193 --------------EEHGNYVRFRDGRCVKRSGNLSEEEAFRCGEMTIQDYSSQQVGLLA 238 Query: 238 GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 V+D+CA+PGGK + +V A D+++ ++ + N++RLHL Sbjct: 239 SPAGGEFVVDVCASPGGKCCHVAELLRGSGRVDARDITEEKIRLIEENIERLHLKNIKAK 298 Query: 295 EMDAFDYCP-------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 DA P + D +L D PCS G + + PD+ ++ + I++ QR++ Sbjct: 299 LWDARKSDPSLTDSLGRGRADLLLCDLPCSGLGVLHKKPDIRFSAGLERILELQSLQREI 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L S+VKPGG +++S C+L + ++EE +L + Sbjct: 359 LDCSQSYVKPGGRLIYSTCTLSRAENEENRDYILEHFSFTLLSE---------------- 402 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P DGF+ RR Sbjct: 403 -----RKVLPGQP---------SDGFYIAEFRR 421 >gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 477 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 43/467 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R ++ L V + +L + + RD L +V TLR D Sbjct: 20 PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDARDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + V Q+L + +A V +VE A+ AK V Sbjct: 80 AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V+ ++ +A + P W L + G R + Sbjct: 139 NAVLRKVTAHDLDGWVEKVAPPYDEDAEDHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 +A + L + T + A+ +L EG Sbjct: 199 EADNERPEVTLAARPGRSTTGELVEALGEDNSLPGRWSPYAVRMAEGGEPGALAAVQEGR 258 Query: 223 WWVQDASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278 VQD + + LD CA PGGK A L A A ++ + Sbjct: 259 AGVQDEGSQLVAAALAAAPVEGRDARWLDGCAGPGGKAALLAALAAGRGAALLAAEKQPH 318 Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 ++R +I D FD +L+D PCS G +RR P+ W R Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWLPGSFDRILMDVPCSGLGALRRRPESRWRRRA 378 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393 +D+ A QR LL + + V+ GG+V ++ CS ++ VV+ VL+ PVE + Sbjct: 379 EDLEAFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGEPVEAEWI 438 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ A+ P+ +++ P + G D + LRR Sbjct: 439 DARPLMPGVPALGDGPD--VQLWPHL--------HGTDAMYLALLRR 475 >gi|76797821|ref|ZP_00780086.1| sun protein [Streptococcus agalactiae 18RS21] gi|76586835|gb|EAO63328.1| sun protein [Streptococcus agalactiae 18RS21] Length = 426 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 121/444 (27%), Positives = 198/444 (44%), Gaps = 36/444 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L V K L+ S LS +D+ LV IV T+ ++ L + Sbjct: 2 TLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWYLSHFI-V 57 Query: 74 SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 + + + LL +S+ Q+LYLD + D+A+V+ AV AK + KL+N++LRRVS Sbjct: 58 DRDKLELWVYHLLLLSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVS 117 Query: 133 RE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP--LYIDLTVK 183 E +R + +P W ++L + YG+ R LAI ++ + +T Sbjct: 118 SETLPEIASIKRQNKRYSVAYSMPVWLVKKLIDQYGETRALAIMESLFERNKASLRVTDL 177 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +T LN L + S F +G+ +QD S+ + N Sbjct: 178 SQKQTIKETLNVRDSHIAETALVADSGNFASTSFFQDGLITIQDESSQLVAPTLKVSGND 237 Query: 244 SVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA-- 298 VLD C+APGGKT+ + ++ VTALD+ +LE + N RL L ++DA Sbjct: 238 QVLDACSAPGGKTSHIASYLTTGAVTALDLYDHKLELVMENAKRLGLSDKIKTKKLDASK 297 Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 +Y + FD +LVDAPCS G IRR PD+ + + D Q +L ++ Sbjct: 298 AHEYFLEDTFDKILVDAPCSGIGLIRRKPDIKYNKANQDFEALQEIQLSILSSVCQTLRK 357 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GGI+ +S C++ ++++ +V++K L + P N + + G I I+P Sbjct: 358 GGIITYSTCTIFEEENFQVIEKFLENHP--------NFEQVELSHTQEDIVKRGCISISP 409 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF ++R+ Sbjct: 410 EQY--------HTDGFFIGQVKRI 425 >gi|320334556|ref|YP_004171267.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211] gi|319755845|gb|ADV67602.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211] Length = 420 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 112/438 (25%), Positives = 168/438 (38%), Gaps = 33/438 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ +L+ V+ LD + L RD L IV LR P + Sbjct: 14 PARAVAVRVLARVL-GGAFAAPTLDEALAHAR---LPARDAGLATHIVYGALRHAPTLLP 69 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 LD +L S P K + LL + L L A +A V V A+ LVN Sbjct: 70 ALDALLKGSTPIKA---RALLLAGAFEKLVLGTAPHAAVSEYVTLARDGF---ASPGLVN 123 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 ++LRRV A +P W ++ +G+ A+ D Sbjct: 124 AVLRRVDVAPD------ASPYALPSWLEQEFRTAFGEVAPDAMLDQLQPSPLWLYLDDAG 177 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + +AV G + L + + G + ++ V G ++ L V Sbjct: 178 VRALDEEGSAVEGGRGDVYRVALDRPLRETRAYRTGHAQPINPASHACVLALGDVDGLPV 237 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LDL G K A L GA+VT++D + R NL RL + A+ + D Sbjct: 238 LDLAGGAGVKAAMLARRGARVTSVDKIAGKHRAARENLARLGVQAQFV-TADLTRPLNAP 296 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 VL+DAPC+ +GT+R HP++ + + A QR LL + V+PGG +V+S Sbjct: 297 PAPLVLLDAPCTGSGTLRAHPEIKLRLTEPAVGEMAALQRTLLTRAADLVQPGGTLVYSV 356 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL + +V L P + L + + +R P Sbjct: 357 CSLADAEGPQVAAAFLAEHP-DFQAEALPDLHVPVVQAGPG------VRTVP-------- 401 Query: 426 VSSGMDGFFAVALRRLIQ 443 G+DGFF V L R Q Sbjct: 402 -VEGVDGFFIVRLHRRAQ 418 >gi|257464362|ref|ZP_05628739.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12] gi|317061867|ref|ZP_07926352.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12] gi|313687543|gb|EFS24378.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12] Length = 432 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 96/444 (21%), Positives = 194/444 (43%), Gaps = 37/444 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L + + +L+ + +F+ + ++ + + +R +D ++ + Sbjct: 9 ALLQEVEQGKYSNIVLNELFHKKSFQ---KGEKNFITEVFYGVIRNKIYLDHMISQKVK- 64 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 KK LQQL R+S QI +++ D V+ VE AK+ ++ VN++LR R Sbjct: 65 --EIKKDWLQQLFRLSFYQIRFMESDDKGVIWEGVELAKKKYG-ISVSRFVNAVLRNFQR 121 Query: 134 EKIELLQR------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----- 182 E ++ + P+WF ++++ + + I + + + V Sbjct: 122 SFSEEEEKLIKAEKEEILLSYPKWFFQQIKKENPTQYLE-ILKSLKRTPLLSVRVNLLKY 180 Query: 183 -KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + E + + ++ +I++ F EG VQDA++ + + G Sbjct: 181 SCEEFEEYLAREEIDIVKKVETVYYLKAGNILASSEFQEGKMIVQDAASYLAAKNLGAKA 240 Query: 242 NLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD C+APGGKT+ + + + ++ +LD+ +++ ++ N +L + +++DA Sbjct: 241 GEIVLDTCSAPGGKTSVLAEEMKNEGQILSLDIHTHKIKLIQENCKKLGITIVQAVKLDA 300 Query: 299 FDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 K FD +LVDAPCS G + + P+ L+T+ ++I + QR++L +K Sbjct: 301 RHLSLQGKKFDRILVDAPCSGYGVLAKKPEGLYTKKPENIGELVILQREILASAAEVLKV 360 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C++ Q+++E L + P + A ++A + G I Sbjct: 361 GGEMVYSTCTILPQENQENAAWFLETHPNF-----ESVALQIPENVAGSYDEWGGFSI-- 413 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 D +D F+ V +RL Sbjct: 414 ------DYQEKVLDSFYMVKWKRL 431 >gi|260578784|ref|ZP_05846691.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734] gi|258603082|gb|EEW16352.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734] Length = 513 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 102/470 (21%), Positives = 170/470 (36%), Gaps = 50/470 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 SG R V +L V L + + RD + TLR Sbjct: 41 SGDKVRDVVFGVLRDVTVDGAFGNLALPKALRE---AGIKGRDAAFATELTYGTLRARGL 97 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +DA+++ + R LR+ QIL V ++A V+ +VE K + + Sbjct: 98 LDAIIEDAAGRKIERIDSVALDALRLGAYQILRTRVENHAAVNTSVELVKAFGAGQ-ASG 156 Query: 123 LVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKE--------R 164 VN +LR ++R+K E A + PEW E G + Sbjct: 157 FVNGVLRALTRKKPETWVERVAPGDSLADLALRNAHPEWIAEVFAEALGVDTATDAGRAE 216 Query: 165 VLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + A + + L + E A + + + EG Sbjct: 217 LERALAADDARPIVHLAARPGQISGEELALITGGTEGKFSPYAVYLDEGAPGEIAPVREG 276 Query: 222 VWWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRR 275 + VQD + + + LDLCA PGGKTA + A +D + Sbjct: 277 MASVQDEGSQLIGLATTRIPVAADLPARWLDLCAGPGGKTAFIASVAMSEQASVDAIEIA 336 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFD-------YCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 + + + D + P+ F VL+DAPCS G +RR P+ Sbjct: 337 EHRAKLIEQTTRDLPVRVHVGDGRNLEAIGSLEAPEGGFARVLIDAPCSGLGALRRRPEA 396 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 WT+D D+ QR+LL+ G+ PGG+V++S CS +++ EVV+ V + Sbjct: 397 RWTKDPQDVAPLVTLQRELLISGLEATAPGGVVIYSTCSPHPKETSEVVRSVSARTG--A 454 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF-FAVA 437 E++ + + + A + ++++ P + G D FA Sbjct: 455 EILDVTQFLPELAETNTAQTS-PFVQLWPHI--------HGTDAMSFAAL 495 >gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces venezuelae ATCC 10712] Length = 470 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 97/465 (20%), Positives = 163/465 (35%), Gaps = 42/465 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + + RD L +V TLR D Sbjct: 20 PVRMLAFEALRAVDERDAYANLVLPPLLRKAREKGDFDGRDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 80 AIISACVDRPLREVDPPVLDVLALGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR++S++ ++ +A + P W L + G R + Sbjct: 139 NAVLRKISQQDLDAWVAQVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225 +A + L + T A G L ++ +G V Sbjct: 199 EADNERPEVTLVARPGRSTTDELAEATETLPGRWSPYALRMAEGGEPGAIEAVKDGRAGV 258 Query: 226 QDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLE 277 QD + + + LD CA PGGK A L GA + A + R Sbjct: 259 QDEGSQLVAIALANAPVEGSDARWLDGCAGPGGKAALLAALASERGAALLASEKQPHRAR 318 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + L + I FD VL+D PCS G +RR P+ W R +D+ Sbjct: 319 LVERALAGNPGPYQVIAADGTRPPWRPGSFDRVLMDVPCSGLGALRRRPEARWRRRPEDL 378 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR LL + +S V+ GG+V ++ CS ++ V + EL+ Sbjct: 379 DGFAPLQRALLTEALSAVRVGGVVGYATCSPHLAETRVV-VDDVLKKVGGAELIDARPLL 437 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + +++ P + G D + LRR Sbjct: 438 PGVPALGDGPD----VQLWPHL--------HGTDAMYLALLRRTA 470 >gi|302541076|ref|ZP_07293418.1| sun protein [Streptomyces hygroscopicus ATCC 53653] gi|302458694|gb|EFL21787.1| sun protein [Streptomyces himastatinicus ATCC 53653] Length = 482 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 95/466 (20%), Positives = 159/466 (34%), Gaps = 40/466 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + RD L +V TLR D Sbjct: 24 PVRILAFEALRAVDERDAYANLVLPPLLRKAREDGGFDARDAALTTELVYGTLRLQGTYD 83 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 84 AIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 142 Query: 125 NSILRRV-------------SREKIELLQRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR++ + + + P W L + G R + Sbjct: 143 NAVLRKIAAADLDTWLERVAPPYDEDPEDHLGVVHAHPRWIVSALWDALGGGRAGIEDLL 202 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 +A + L + + AV + +L EG Sbjct: 203 EADNERPEVTLVARPGRAATDELVAAVGEESALPGRWSPYAVRLAEGGEPGALDAVREGR 262 Query: 223 WWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIV----SGAKVTALDVSKR 274 VQD + + + LD CA PGGK A L GA + A + Sbjct: 263 AGVQDEGSQLVALALAAAPLDGPDRRWLDGCAGPGGKAALLGALAAERGAALLAAEKQPH 322 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R + L + I + FD +LVD PC+ G +RR P+ W R Sbjct: 323 RARLVERALAGNPGPYQVIAAKGTRTKWRPESFDRMLVDVPCTGLGALRRRPEARWRRRP 382 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 +D+ A QR LL + ++ + GG+V ++ CS ++ VV VL + Sbjct: 383 EDLAGFAPLQRGLLREALAATRIGGVVGYATCSPHPAETRAVVDDVLGEARKDQGATAEW 442 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + AL +++ P + G D + LRR Sbjct: 443 IDARPLMPGVPALGEGPDVQLWPHL--------HGTDAMYLALLRR 480 >gi|146305094|ref|YP_001185559.1| sun protein [Pseudomonas mendocina ymp] gi|145573295|gb|ABP82827.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas mendocina ymp] Length = 437 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 115/445 (25%), Positives = 191/445 (42%), Gaps = 42/445 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + SL L + D+ L + + R+ PR+ + D +L Sbjct: 14 VLSGKASLGSSLP-----PQLDKVEHHDRALAQDLAFGAARWQPRLQLLADKLLEKPFKA 68 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 ++ LL + + Q+L+ + ++A + V A K+ L+N++LRR RE Sbjct: 69 ADKDVEALLLIGLYQLLHSRIPEHAAIGETVGCAGALKKP-WAKGLLNAVLRRAQREHEA 127 Query: 138 LLQRIAGISI----IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWA 190 L + + P W +++L++F+ E AI A + + L V + + Sbjct: 128 LFAELDRDPVLHTAHPRWLQKQLKSFWP-EYWQAICAANNAHPPLILRVNRRHGSRDAYL 186 Query: 191 HKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 +L P + +LPGF EG VQD +A + L Sbjct: 187 EELRGAGFAAEPCTFSRDGVRLLQPCDVTALPGFREGRVSVQDEAAQLAADLLELAPGQR 246 Query: 245 VLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAF 299 VLD CAAPGGKT L+ + +V A+D+ ++RL ++R NL RL L A Sbjct: 247 VLDACAAPGGKTCHLLEAEPALAEVIAVDLEEKRLTRVRENLQRLGLEARLIAADGRATK 306 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + F +L+DAPCS+TG IRRHPD+ TR ++DI A Q +LL + PGG Sbjct: 307 VWWDGTPFQRILLDAPCSATGVIRRHPDIKLTRKSEDIPALAQLQGELLDALWPTLAPGG 366 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 I++++ CS+ ++ + + L +P E+ +I L ++ P + Sbjct: 367 ILLYATCSVLPTENSDTIAAFLARTPDAQEV---------AIGGDFGLQAAHGRQLLPQL 417 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQP 444 G DGF+ L + P Sbjct: 418 --------DGHDGFYYAKLIKSAVP 434 >gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1] gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1] Length = 477 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 43/467 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R ++ L V + +L + + RD L +V TLR D Sbjct: 20 PVRFLAFEALRAVDERDAYANLVLPPLLKKARAKGDFDARDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + V Q+L + +A V +VE A+ AK V Sbjct: 80 AIVAACIDRPLREVDPPVLDVLNMGVHQLLGTRIPTHAAVSASVELARVVLG-EGRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V+ ++ +A + P W L + G R + Sbjct: 139 NAVLRKVTAHDLDGWVEKVAPPYDEDAEDHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 +A + L + T + A+ +L EG Sbjct: 199 EADNERPEVTLAARPGRSTTDELVEALGEDNSLPGRWSPYAVRMAEGGEPGALAAVQEGR 258 Query: 223 WWVQDASASIPVQLFGTLNNL----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278 VQD + + LD CA PGGK A L A A ++ + Sbjct: 259 AGVQDEGSQLVAAALAAAPVEGRDARWLDGCAGPGGKAALLAALAAGRGAALLAAEKQPH 318 Query: 279 LRCNLDRLHLYA---EDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 ++R +I D FD +L+D PCS G +RR P+ W R Sbjct: 319 RARLVERALAGNPGPYQVITADGTRPPWLPGSFDRILMDVPCSGLGALRRRPESRWRRRA 378 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL 393 +D+ A QR LL + + V+ GG+V ++ CS ++ VV+ VL+ PVE + Sbjct: 379 EDLEAFAPLQRGLLREALKAVRVGGVVGYATCSPHLAETRVVVEDVLKGRGGEPVEAEWI 438 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ A+ P+ +++ P + G D + LRR Sbjct: 439 DARPLMPGVPALGDGPD--VQLWPHL--------HGTDAMYLALLRR 475 >gi|239917585|ref|YP_002957143.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] gi|239838792|gb|ACS30589.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] Length = 543 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 107/488 (21%), Positives = 170/488 (34%), Gaps = 66/488 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ ++ V + +L + L +RD + TLR L DA Sbjct: 64 PARRVAFGVVRSVHAEDAYANLVLPARIRQAR---LDRRDAGFATELAYGTLRGLGLYDA 120 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L + + LR+ Q+L + V +A +D V + + + VN Sbjct: 121 ILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEVG-AGASGFVN 179 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLEN-----------FYGKE 163 ++LRR++ +E A + P W L Sbjct: 180 AVLRRIAERPLEEWLADVAPADGGDAALAVRTSHPVWIVRALRQALAAHRGTRHIADRDA 239 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGF 218 + A+ +A +P ++L A+ L LPG Sbjct: 240 ELAALLEANNAPPVVNLVALPVAGGAEALAAALDDGAEPGPLAPDSALHSGGDAGRLPGV 299 Query: 219 AEGVWWVQDASASIPVQLFGTLNNL-------SVLDLCAAPGGKTAQLIV----SGAKVT 267 EGV VQDA + + + + LDLCA PGGK A L GA + Sbjct: 300 REGVLRVQDAGSQLTARALAHVPVPAAEGRAERWLDLCAGPGGKAALLAALAAERGATLV 359 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIR 323 A +V+ R + +R L + A + D FD VLVDAPC+ G +R Sbjct: 360 ANEVAPHRADLVRQALAAVPAGAWTVRAGDGRTIADAPEAAPAFDRVLVDAPCTGLGALR 419 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R P+ W R D+ + Q +LL ++ + PGG++ + CS ++ VQ ++R Sbjct: 420 RRPESRWRRTPADLAELTGLQAELLDAAVAVLAPGGVLAYVTCSPHVAETVVQVQDLVRR 479 Query: 384 SP-----------IPVELVPLNSAYWKSIDMAMALS-PEGWIRITPDMLEKIDGVSSGMD 431 P V L L + ++ P G D Sbjct: 480 HPELELLDARTALDAVALDDLRLDEAEPAGAPEPADVVARTAQLWPH--------RHGTD 531 Query: 432 GFFAVALR 439 F LR Sbjct: 532 AMFLALLR 539 >gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC 23834] gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC 23834] Length = 419 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 120/450 (26%), Positives = 193/450 (42%), Gaps = 48/450 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N + +++H ++ V +L+ +L + D LS +++ ++ I RF + A Sbjct: 5 NVQTLAAHSVAAVEA-GCNLSDVLAEIWRDHPQ--LSAQERGALQDIAYGCQRFSGSLRA 61 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV- 124 +LD +L LPR ++ L+ ++ Q+ Y A +AVV+ AV A + + ++ A Sbjct: 62 LLDLMLNKPLPRAD--IRSLILAALYQLAYSRNAAHAVVNEAVRAAGKIGKGQYKALTNA 119 Query: 125 --NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LR + Q G +P W+ ERL+ Y E L I++A S + L + Sbjct: 120 LLRRFLRERDSLMQQAQQSPEGRYNLPNWWLERLQRDYP-EHWLQITEAFNSHPPMTLRI 178 Query: 183 ---KFDIETWAHKLNAVMLPTG----GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 D E + L+ + + P + +LP FAEGV VQD A Sbjct: 179 NRRHTDAEGYLKILDEHGMQAEILGSHAVMLATPVPVSALPLFAEGVVSVQDWGAQQAAA 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--D 292 N VLD CAAPGGK+ L + +TA+D+ RL+++R NL RL+L AE Sbjct: 239 WLNVQNGERVLDACAAPGGKSGHLLEWADCTLTAIDIDPTRLQQVRDNLSRLNLSAELHA 298 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 LF+AVL D PC+++G RHPD+ W R D +A Q LL Sbjct: 299 ADARQWASCYDGLLFNAVLADVPCTASGVACRHPDIKWLRRPQDAKNTAAQQTDLLDALW 358 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +KPGG ++ S CSL +++ +Q L+ P Sbjct: 359 RTLKPGGRMLLSTCSLFTEENGSQLQAFLQRHPDAACTRSET------------------ 400 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+ + DGF+ + + Sbjct: 401 --LLPNPHQ---------DGFYYALIHKTA 419 >gi|237740345|ref|ZP_04570826.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31] gi|229422362|gb|EEO37409.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31] Length = 434 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 105/454 (23%), Positives = 199/454 (43%), Gaps = 42/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+ + V+ L+S V K +L+ + + L+ +++ + I LR +D Sbjct: 1 MSVKYVAMKLISFVD-KGSYSNIVLNDAFKE---FYLTAKEKAFITEIFYGVLRNKNFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ Q+ ++ VV A E AK+ +K + Sbjct: 57 YMIEKNTKV---IKKEWIRNLLRISIYQLTFMSSDAKGVVWEATEIAKKH--GIAISKFI 111 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + IP++F + LE YG E + + Y+ Sbjct: 112 NGTLRNYLRNKDLEIKKLHDEKNYEILYSIPQYFCDILEKQYGSENLNQAIISLKKIPYL 171 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV--------SLPGFAEGVWWVQDASA 230 + V + ++ + L I++ + +S+ + F EG QDAS+ Sbjct: 172 SVRV--NKLKYSEEEFEEFLKEKDIQIIKKVDSVYYVNSGLIINSKEFKEGKIIAQDASS 229 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + G N VLD+CAAPGGKTA + + + ++ A+D+ + + + + N+ +L Sbjct: 230 YLAAKNLGVKPNDLVLDICAAPGGKTAVLAEEMKNKGEIIAIDIHQHKKKLIEENMKKLG 289 Query: 288 LYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + +D + FD +LVD PCS G IR+ P++L+T++ ++I + A Q + Sbjct: 290 IDIVKATVLDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLE 349 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L +K GG +++S C++ Q++ E V+K L A +++ Sbjct: 350 ILNSAADILKDGGELIYSTCTIISQENTENVEKFLNERKEFKV-----KALNIPENVSGE 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I + MD F+ + L + Sbjct: 405 YDKLGGFSI--------NYKEEIMDNFYIIKLVK 430 >gi|296285189|ref|ZP_06863187.1| tRNA and rRNA cytosine-C5-methylase [Citromicrobium bathyomarinum JL354] Length = 418 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 140/440 (31%), Positives = 198/440 (45%), Gaps = 35/440 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 G+ AR + LL V+R+ +L +A R L D L RAI TLR+L Sbjct: 9 PGLPARRAALRLLDGVLRRGETLEQ-----NETAALRGLPASDAGLARAIAAETLRWLVD 63 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 DA++D LP + +LR+ +AQ L LD +AVV A+ + Sbjct: 64 FDALIDSATREVLPE-DAKPRTVLRLMLAQWLRLDTPPHAVVATALPL---------LSG 113 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + V + + +PE ER +A A PL + L Sbjct: 114 GPKRLAHGVFGALTKRGVELPAAPTLPEAVAERWGER---AEAIAAGLAEPPPLDLTLRD 170 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 W KL A L G +RL +++ L GF +G WWVQD +AS+P +L G Sbjct: 171 PAQTAEWTVKLGADSLMPGHLRLSRG-QAVHGLEGFEDGAWWVQDLAASLPARLLGDGQG 229 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LDLCAAPGGKT QL G +VTALD+S +RL+ L NL+R L AE I Sbjct: 230 RRALDLCAAPGGKTLQLAAQGWQVTALDISAKRLKLLEENLERTGLEAEVIAADAFKWEP 289 Query: 303 P---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 P FDA+L+DAPC++TGT RRHPDVL I + A Q +L+ + ++ PGG Sbjct: 290 PAENGAKFDAILIDAPCTATGTARRHPDVLHRIGPRQIEQMAEVQARLIERASGWLTPGG 349 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V++ CSL+ + +P + + ++ + G +R P M Sbjct: 350 ALVYAVCSLESE---------EGEEQAEKVWLPREPVSAEELPAGLSPTAHGTLRTDPGM 400 Query: 420 LEKIDGVSSGMDGFFAVALR 439 L G+DGFF R Sbjct: 401 L----PEHGGLDGFFIARWR 416 >gi|330937254|gb|EGH41269.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. pisi str. 1704B] Length = 390 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 106/399 (26%), Positives = 175/399 (43%), Gaps = 30/399 (7%) Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 PR+ A+ +L ++ LL V + Q+ Y + +A + V A + K+ Sbjct: 1 PRLSALAAKLLQKPFKAADDDVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WA 59 Query: 121 AKLVNSILRRVSREKIELLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISP 175 L+N++LR R+ LL + + P W ++ L+ + + + ++ P Sbjct: 60 KGLLNAVLRNAQRDGEALLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPP 119 Query: 176 LYIDLTVKFDI-ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228 + + + + + + + LN L + P + SLPGFAEG VQD Sbjct: 120 MILRVNRRHNRRDQYLELLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDE 179 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDR 285 +A + L VLD C APGGKT L+ + V A+D+ +RL ++R NLDR Sbjct: 180 AAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAKRLVRVRENLDR 239 Query: 286 LHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 L L A + + K F +L+DAPCS+TG IRRHPD+ TR DDI A Sbjct: 240 LGLDAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQADDIAALATL 299 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL ++ GG++V++ CS ++ +V++ L + EL A + Sbjct: 300 QGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQAGQPPAGI 359 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A ++ G DGF+ L ++ Sbjct: 360 KQA------------HGRQLLAQQGGHDGFYYAKLIKIA 386 >gi|239904671|ref|YP_002951409.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus RS-1] gi|239794534|dbj|BAH73523.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus RS-1] Length = 477 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 89/427 (20%), Positives = 161/427 (37%), Gaps = 35/427 (8%) Query: 6 NARLVSSHLLSCVMRK----RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ +L V+ + LD+ DS L RD+ L +V LR Sbjct: 44 PARRIALTVLGRVLPSPKSPGQDVQAALDVALADS---TLDPRDRGLATELVYGYLRLCG 100 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 R+D +L L + +++++L ++ +IL+ V YA VD AV ++ + Sbjct: 101 RLDYILAQFLKNP-TAVPLAVRRILGLAAYEILHCAKVPAYASVDWAVSAVRK-AGGKGL 158 Query: 121 AKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 + + N++LRR R++ ++ PEW G + Sbjct: 159 SGMANAVLRRVAADPGAFEEPGFYRRDRPSEAVYLSRAFSCPEWIVSLWLGACGPDETRQ 218 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI----------VSLPG 217 A P + L V NA+ G + ++ ++LP Sbjct: 219 HLAAQAEPAPLGLRVNGARPEAQALFNALAALPGALYAVFPTIAVPTGTDFAAAGLNLPE 278 Query: 218 FAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275 + ++A+ +L + D CA GGKT + +G +V A D+ R Sbjct: 279 LLASGALSRQSAAAQDVLYRLDLPEWPEPIFDACAGRGGKTLLIAEAGKRVFAADMHAAR 338 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L L RL L A +L+DAPCS G + R PD W R + Sbjct: 339 LAGLPREAARLGLPPIPAFRASATRMALGAPVGTILLDAPCSGLGVLSRRPDAKWRRQPE 398 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 D+ Q +L + + PGG +V+ C+++ ++E+ + ++ + V ++ Sbjct: 399 DLAGLTRLQGAMLEAAYANLAPGGRLVYITCTVNPAENEKAIDRLGSRRHDLILDVEASA 458 Query: 396 AYWKSID 402 + Sbjct: 459 VPDPVLG 465 >gi|91774564|ref|YP_544320.1| Fmu (Sun) [Methylobacillus flagellatus KT] gi|91708551|gb|ABE48479.1| Fmu (Sun) [Methylobacillus flagellatus KT] Length = 416 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 103/447 (23%), Positives = 171/447 (38%), Gaps = 56/447 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ L+ V+ L + + L +++ V V LR + + Sbjct: 7 RLAAIALADVLGNPGPADAKLGKFFREHR--ELGNKERAWVAEAVYGVLRRRSFLVYLAG 64 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 R+ VA ++ + +D + Q +++ + AK + Sbjct: 65 NEDPR-------------RLLVAWLVRVQGNSLRELDELLNQQQKEWAHEIKAKSTEGLS 111 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185 A + +PEW +RLE+ YG E L I+ + P +DL V + Sbjct: 112 -------------PAIQADLPEWLWQRLESQYGAEEALVIARSMHKPASLDLRVNLVKSN 158 Query: 186 IETWA-----HKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E K A P ++ SI P F EG VQD + + L Sbjct: 159 REEVLARFASEKAGAEATPYSPTGIRLPQRMSINRHPFFTEGKIEVQDEGSQLLAMLVAP 218 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA----ED 292 + D CA GGK L+ + ++ A DVS+RRL L L R L Sbjct: 219 RRGEMIADFCAGAGGKSLALGALMRNTGRLYAFDVSERRLHNLGQRLKRSGLSNLHSQVI 278 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D F+ VLVDAPCS GT+RR+PD+ W + +DI + Q +L + Sbjct: 279 SSESDPKLKRLNGKFNRVLVDAPCSGLGTLRRNPDLKWKQTPEDIAELVAKQTAILQRAA 338 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 VK GG +V++ CSL +++E+V + L + P + + +++ + Sbjct: 339 KLVKAGGRLVYATCSLLAEENEQVAEAFLSAHPQFTLINATEILAQQQVELDTGT----Y 394 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ P DGFFA Sbjct: 395 LKLLPH--------QHETDGFFAAVFE 413 >gi|256832544|ref|YP_003161271.1| Fmu (Sun) domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686075|gb|ACV08968.1| Fmu (Sun) domain protein [Jonesia denitrificans DSM 20603] Length = 517 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 169/466 (36%), Gaps = 42/466 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L V +L + L RD + TLR DA+ Sbjct: 62 ARQVAFEVLRQVADSDAYANLVLPPALRRAR---LEGRDAGFATELAYGTLRMRGLYDAI 118 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--------- 117 + L ++ LR+ V QI+ + V +A V V A+ + Sbjct: 119 IAAHTTRPLEDIDSAVLDCLRLGVHQIVSMRVPAHAAVSETVGVARDNIGAGPAQFINAV 178 Query: 118 -RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAISDA 171 R ++ + + + E ++ +A P W L + + ++A+ DA Sbjct: 179 LRSISETDSDEIMAKAVEGLDETHTLAVRHSHPAWVVRALRDALGAQGRDRSEIVALLDA 238 Query: 172 CISPLYIDLTVKFDIETWAHKL----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + + + ++V + S+ G VQD Sbjct: 239 DNAAPAVTLVARPGLSDADELVGLIEDSVPGQWAPTAVIMPGTDPASVDDVRTGRAGVQD 298 Query: 228 ASASIPVQLFGTLN----NLSVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRR---L 276 + + + LD+CA PGGK A + A++ A +V R + Sbjct: 299 EGSQLVTLALVDAPLEGRDERWLDMCAGPGGKAALLGAFADLRQARLVANEVQPHRAELV 358 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 EK L + + + + +D +LVDAPC+ G +RR P+ W R D Sbjct: 359 EKSLRALPQDAIERIQVWDGREIGVLEPGAYDRILVDAPCTGLGALRRRPESRWRRQARD 418 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-PIPVELVPLNS 395 + + + Q LL+ + V+ GG+V + CS ++ V + ++ P VE + S Sbjct: 419 VGELSQIQEDLLVSALQAVRVGGVVAYVTCSPHIGETRVAVDQGIKKFGPDNVERLDTPS 478 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ + +++ P + D + LRR+ Sbjct: 479 VVRQIAGDSIDVGDSTDVQLWPHV--------HQTDAMYLALLRRI 516 >gi|187735067|ref|YP_001877179.1| sun protein [Akkermansia muciniphila ATCC BAA-835] gi|187425119|gb|ACD04398.1| sun protein [Akkermansia muciniphila ATCC BAA-835] Length = 412 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 163/394 (41%), Gaps = 15/394 (3%) Query: 1 MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ + R + + L R L+D E +A L D+ LV+A+V LR Sbjct: 1 MKNNPPSPRQTALNCLRSWHAGRSFAETLVDRECSRTA---LPSADRHLVQALVFSVLRN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D V+ + R + +L++ ++Q+ L +AD+A V V A Sbjct: 58 QTWLDHVIGTLRKG---RLDVEARLILQLGLSQLFLLGMADHAAVYETVNLASVRLRGLV 114 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A L N++ R + + ++ P W R G + + + Sbjct: 115 NAILRNALRREKTILEEREKLPLSIHYSTPAWLVRRWTEQMGPQMARDLLRWNNTTP--R 172 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L V+ + + A + P E ++ L G +V D S + L Sbjct: 173 LYVRANPLMPMKNIPASLAPLDRAPGWFSVEGLLPLEEIKTGSLYVADPSTRYSIDLLAP 232 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +LD CAAPGGK A +TA D+ + RL L+ NLDR + Sbjct: 233 QPGEEILDACAAPGGKSAAIIAATGGKAHLTATDLHEHRLPTLKENLDRQGSSFVRTAQA 292 Query: 297 DA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D K FDAVL+D PCS+TG I+R DV W ++I + Q+ +L Sbjct: 293 DWSLPCRTEWKGRFDAVLLDVPCSNTGVIQRRVDVRWRLTPEEIRRLTALQKTILENASR 352 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 VKPGG +V+S CS+D ++ +++ L++ P Sbjct: 353 AVKPGGRLVYSTCSIDAEEDGLLIRDFLQNHPEW 386 >gi|184200812|ref|YP_001855019.1| putative rRNA (cytosine-C(5)-)-methyltransferase [Kocuria rhizophila DC2201] gi|183581042|dbj|BAG29513.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201] Length = 553 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 115/475 (24%), Positives = 189/475 (39%), Gaps = 50/475 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + L V + +L + L +RD + +RF DA Sbjct: 91 PARLAAFRALRAVTSEDAYGNLVLPGLVRELR---LDRRDAAFATELGYGAMRFSGTWDA 147 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL + L + ++ LR+ Q+L + V D+A +D V + + + A LVN Sbjct: 148 VLAECVDRPLEQLDPAVLDALRLGTHQLLAMRVPDHAALDATVGLVRGEIG-QGPAGLVN 206 Query: 126 SILRRVSRE------------KIELLQRIAGISIIPEWFKERLENF-----YGKERVLAI 168 ++LR+V+R + + +R+ P W L E + A+ Sbjct: 207 AVLRKVARRSQEEWFEALEAEQPDRWRRMGIRHAHPVWEIRALRRALRANGRDPEEITAL 266 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTG--GIRLKELPESIVSLPGFAEGVWWVQ 226 +A + L + + L A P + +PG EGV VQ Sbjct: 267 LEADNEAPRVHLVALPGLGSLEGALEAGAEPGDLVPGSAVSGGGDVHRVPGTREGVVRVQ 326 Query: 227 DASASIPVQLFGTLNNL----SVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEK 278 DA + + ++ + DLCA PGGK A GA + A +VS+ R E Sbjct: 327 DAGSQLVARVLAAADVTEDSGRWADLCAGPGGKAALLAALAHERGAHLLANEVSEHRGEL 386 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 +R +L + A ++ DA + FD VLVD PC+ G +RR P+ W R D Sbjct: 387 VRQSLQPVPRDAWEVRTGDAREVPGWHPGGFDRVLVDVPCTGLGALRRRPEARWRRTPSD 446 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + A QR+LL + +PGG+V+++ CS ++ +V+ +L L + A Sbjct: 447 VADLATVQRELLRAAVDATRPGGVVLYATCSPHTAETHDVLHDLLDERTDVTVLDTAHLA 506 Query: 397 YWKSIDMAMALS-------PEGW--IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ A+ P G +++ P + G D + VALRR Sbjct: 507 ARAALPGALDGDRAVRHEVPGGGSSVQLWPHV--------HGTDAMYMVALRRTA 553 >gi|240116730|ref|ZP_04730792.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|240118952|ref|ZP_04733014.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID1] Length = 417 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 61 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 177 NRRHGNAESYLEKLVAEGITAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 357 WQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416 >gi|260439509|ref|ZP_05793325.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2] gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18] gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1] gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2] Length = 419 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGITAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|291613407|ref|YP_003523564.1| Fmu (Sun) domain protein [Sideroxydans lithotrophicus ES-1] gi|291583519|gb|ADE11177.1| Fmu (Sun) domain protein [Sideroxydans lithotrophicus ES-1] Length = 423 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 93/447 (20%), Positives = 163/447 (36%), Gaps = 52/447 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L ++ +L + + ++ LV + LR +D Sbjct: 10 LVIQALRAALKMEHPSDAVLRHFFQAER---IGSNERSLVAETLFGVLRHRLFLDHACTL 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++ +L +R + L+ + + K N Sbjct: 67 DDKGQATARRMALAYWVRFGGYNLRELEPLLKPKEAEWLGKVKSIDANA----------- 115 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 ++ + +PEW E+L + + +LA+ + +DL V Sbjct: 116 ----------LPLSIQAELPEWIVEKLRPQHSDDEILALGRSMQQSAPLDLRVNTLLAGR 165 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240 L A + + + P F G + VQD + + L Sbjct: 166 NEVLQSLQAEGMDAQATPYSPIGIRLKYKPALNKHALFLTGKFEVQDEGSQLLGILLAPK 225 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 N V+D CA GGKT ++ S ++ A DVS++RL L+ L R L Sbjct: 226 RNDMVVDFCAGAGGKTLMLGAMMNSQGRLYAWDVSEKRLTNLKPRLKRSGLSNVQPQLIA 285 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ + + + + Q +L Sbjct: 286 HENDNKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKFRQSAQSVAELNEKQAAILASAAR 345 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V++ CSL ++++ +VQ L + P + + + ID+AM ++ Sbjct: 346 LLKQGGRLVYATCSLLHEENQAIVQAFLAAHPDFTLVPASDVLRQQHIDLAMGD----YL 401 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++TP DGFFA + R Sbjct: 402 QLTPQY--------HNTDGFFAAVMER 420 >gi|320093626|ref|ZP_08025510.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319979414|gb|EFW10892.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 514 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 99/480 (20%), Positives = 162/480 (33%), Gaps = 50/480 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGD-SAFRLLSQRDQILVRAIVNVTLRFLPRID 64 R V+ +LS V +L RD +V+ TLR R+D Sbjct: 41 APRRVAFEVLSEVTSSGAFANIVLPKALRRIRREEPFDDRDAAFTSELVHGTLRARGRLD 100 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN------- 117 L + L + LLR+ Q+L + V D+A V V+ A+ + Sbjct: 101 WALARHVDRPLGDLDPRVLDLLRMGAHQLLDMRVPDHAAVSATVDVAREHLTDGPVRMVN 160 Query: 118 ---RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-----YGKERVLAIS 169 R A+ + + R+A PEW L Y + + Sbjct: 161 AVLRALAREEVGRIDEEIARIEDGDARLAVAHSHPEWMVRALRAALAAHGYDEAELEDAL 220 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLP---------TGGIRLKELPESIVSLPGFAE 220 A + L + + + LP + Sbjct: 221 AADNEAPIVSLAARPGLIGVEELCEEAEDVLSARVATGLVSKCAVLLASGDPARLPSIRQ 280 Query: 221 GVWWVQDASASIPVQLF-----GTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDV 271 G+ VQD + + Q+ + S LDLCA P A GA V A ++ Sbjct: 281 GLAGVQDEGSQLAAQICAGAPLVGQGDSSWLDLCAGPGGKAALLGALAAGRGAHVVANEI 340 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMD------AFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 R + L +++ D P FD VLVDAPC+ G++RR Sbjct: 341 HPHRARLVERTTRALGT--VEVVSGDGRTFGGQGTQWPLGSFDRVLVDAPCTGMGSMRRR 398 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 P+ W R D+ Q +LL + + +PGG++ + CS ++++ + V+++L + Sbjct: 399 PESRWRRAPGDVDGLVELQERLLDRAGALTRPGGVMTYVTCSPHRRETRDQVERLLGAGG 458 Query: 386 ----IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 V L + ++ G ++ G G D F ALRRL Sbjct: 459 WELLDAVALADSVAVEPLAVPDRAGRVDGGGA----GRTLQLWGHRHGTDSMFVAALRRL 514 >gi|284032217|ref|YP_003382148.1| Fmu (Sun) domain-containing protein [Kribbella flavida DSM 17836] gi|283811510|gb|ADB33349.1| Fmu (Sun) domain protein [Kribbella flavida DSM 17836] Length = 459 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 106/460 (23%), Positives = 170/460 (36%), Gaps = 43/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R V+ ++ V + L+ D + LS RD +V+ TLR+ DA Sbjct: 17 KVRQVAYRVIRQVNGEDGYANLALNKALRD---QRLSGRDAAFCTELVHGTLRWQGAYDA 73 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + L L LLR+ Q+L + V YA V+ V + + + + LVN Sbjct: 74 FLARSVSRPLADLDPELLDLLRLGAHQLLRMRVDSYAAVNEMVTLTRAEVG-QSRSGLVN 132 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDAC 172 ++LR++S+ ++ +A P W E E V + DA Sbjct: 133 AVLRKISQRTLDQWIATVAPKPDEDPGGYLAIAKAHPRWVVEAFAEVLDAESVEDLLDAD 192 Query: 173 ISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 P + L + D++ + + + + A G VQD Sbjct: 193 NEPPKVTLVARPGLSDLDELVEAGATRARWSPYAAILQGGGDPGRIQAVATGRAGVQDEG 252 Query: 230 AS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + ++ LDLCA PGGK+A L + A+ ++ +K R L R Sbjct: 253 SQLVAAALASAPLDGSDAKWLDLCAGPGGKSALLAALANQREAV-LTAVEPQKHRAELVR 311 Query: 286 LHLYAEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 +L A P +D VL D PCS G +RR P+ W R +D+ Sbjct: 312 SNLRAIPGDHQVLIGDGTKPTWPSGWYDRVLADVPCSGLGALRRRPEARWRRTPEDVEGL 371 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q LL I+ V+PGG+V + CS ++ VV VL P V L + Sbjct: 372 RPLQEALLASAITSVRPGGVVAYVTCSPHPGETRAVVDAVLARRPDAV-LEDARALLPGV 430 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ P + G D + +RR Sbjct: 431 PSLGDGPD----VQLWPHV--------HGTDAMYLALIRR 458 >gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M13399] Length = 419 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHI--RAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D K+A Q LL Sbjct: 299 CADAQDLPAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L EL+ Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria gonorrhoeae F62] gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria gonorrhoeae F62] Length = 419 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|312195556|ref|YP_004015617.1| Fmu (Sun) domain protein [Frankia sp. EuI1c] gi|311226892|gb|ADP79747.1| Fmu (Sun) domain protein [Frankia sp. EuI1c] Length = 486 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 96/477 (20%), Positives = 152/477 (31%), Gaps = 59/477 (12%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR+++ +L V + LL A R L+ RD+ + LR +D + Sbjct: 24 ARMLAWEVLRAVDERGAYANLLLPSLL---AQRRLTGRDRGFATELTYGALRAQGLLDGL 80 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF------ 120 LD V + L+ LR+ Q+L V A V V+ + R Sbjct: 81 LDTVTSRPVATVDPGLRDALRLGTYQLLRTRVPARAAVGTTVDLVRATAGERPVRFANAV 140 Query: 121 ----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAI 168 + + + +A ++ P W E + + A Sbjct: 141 LRRVADRVAETGGDIATMLSAPAFDRDPFGHLAVVTAHPRWIVEVFADALDGDLDETRAA 200 Query: 169 SDACISPLYIDLTVKFD---IETWAHK-----LNAVMLPTGGIRLKELPESIVSLPGFAE 220 A + + L D + + L + +LP A Sbjct: 201 LQADDTRPAVHLVAPPDQLSRDELLAEVHEAGLAGEPGRYSPFAVVLAGGDPGALPAVAA 260 Query: 221 GVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275 VQD + + + +DLCA PGGK A L + Sbjct: 261 HRAAVQDEGSQLVALALARTPTVGPDSGVTVDLCAGPGGKAALLAALLTSGQVGETLGLP 320 Query: 276 LEKLRCNLDR------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 L R A + + P D VLVDAPC+ G +R Sbjct: 321 EPALLAFEPRASRAGLVAAALAGRPGAFAVRADGRYPPLPAGRVDRVLVDAPCTGLGALR 380 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R P+ W + D A QR+LL+ + V+PGG+V + CS +S EVV V+ Sbjct: 381 RRPEARWRKLASDATALARLQRQLLVSALDLVRPGGVVAYVTCSPHPAESVEVVASVVEQ 440 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L+ + + ++++ P G D F LRR Sbjct: 441 R-DAVTLLDARQSLPGVPALGEGP----FVQLWPH--------RHGTDAMFLALLRR 484 >gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea ATCC 14685] gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea ATCC 14685] Length = 419 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPNLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNATHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L++ Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKSHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKDLDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADAQDLPAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDGMKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L EL+ Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria polysaccharea ATCC 43768] gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria polysaccharea ATCC 43768] Length = 419 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ + V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIEAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLSRHNDA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|150021390|ref|YP_001306744.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429] gi|149793911|gb|ABR31359.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429] Length = 416 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 97/446 (21%), Positives = 182/446 (40%), Gaps = 37/446 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS + +++ LL R I T ++ + ++ LR Sbjct: 1 MKSDL---IIAYRLLRKKFRSGIFSTEFYQAFSY--------VEEKAFFKNLIFGVLRKQ 49 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D V++ +L S++ +LR+ Q+L+ + Y++V+ VE ++ + F Sbjct: 50 EYLDWVINSLLKK--KDIPPSIRTILRIGTYQLLFTNKPSYSIVNETVELVEK----KSF 103 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN+ILR++S+ + + P+W E + F + + I + PL Sbjct: 104 KGLVNAILRKISKIGYTEPKELYLKYSHPKWLIEYWKKFLPLDYIYKILEYNQYPLKTTA 163 Query: 181 TVK---FDIETWA-HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 V D + + GI +++ E+ L + G Q S+ I L Sbjct: 164 RVNKRKIDRDKLKIENIFPTPHSPVGIYFEKIEENPWKLDKYINGYITYQSESSQIIPLL 223 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + V D CAAPGGK ++ + DV K++++ L RL+L + I+ Sbjct: 224 VDFEKDELVFDACAAPGGKATHILELCDVNLVINDVEKQKIKILENQFKRLNLRPKKILN 283 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 DA K FD + +DAPCSS G RR+P+VL + ++ K + Q ++ ++ Sbjct: 284 FDAQKITLKDKFDKIFIDAPCSSLGIARRNPEVLRRQKKENFKKLSEIQINIISNLWKYL 343 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GI+++S C++ +++ V+K + + +D+ L G + Sbjct: 344 KKHGIMIYSTCTVTIEENTNTVKK--------------WKPFAEFVDIRERLEKFGIKYV 389 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 F+ LR++ Sbjct: 390 WDGYGTLFYPDEILTP-FYVSILRKI 414 >gi|297588339|ref|ZP_06946982.1| probable rRNA methylase [Finegoldia magna ATCC 53516] gi|297573712|gb|EFH92433.1| probable rRNA methylase [Finegoldia magna ATCC 53516] Length = 423 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 100/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 + L +RD ++ V + ID V+ L + + ++LR++ Sbjct: 22 SELLKTYDYGDLDKRDIAYIKRCVFTEIENRFFIDYVISKCSDLELNKLDKIVLEILRMA 81 Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK-IELLQRIAGISII 148 +IL++ ADYAVVD AVE A H+ VN++LR V R E I Sbjct: 82 TTEILFMKTADYAVVDEAVELANNL---THYKDYVNAVLREVCRINLDEEDLGDEIKFSI 138 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK-------LNAVMLPTG 201 + + L Y K+ V + + + E + Sbjct: 139 NKELLKMLNKSYSKKTVKKLLKSFFYKSDFVIKQNKLKENNLKTNLENQGFVLEEHPFLK 198 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI- 260 + PESI+ F EG + +QD S S+ ++ + N VLD+CAAPG K+ + Sbjct: 199 DSFIVRNPESIIDTNEFKEGKFIIQDGSCSLCAEVLEPMENSVVLDICAAPGSKSCNIQE 258 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316 + + + D++ ++++++ N+ + + + DA FD +LVDAPC Sbjct: 259 LTNNQSIIYCNDINNNKIDRIKENVYKCGVENVQYLNFDANILQEGLINKFDRILVDAPC 318 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S+TG I ++P++ R D+ QR++L ++K GG++V+S CSL K+++EE Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVETQRRILENCEKYLKKGGVLVYSTCSLLKEENEEN 378 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V + + K D+ +I++ P G GFF Sbjct: 379 VDYI------------EDKLNLKREDIDFYGDKNEFIKLMP--------FQKGTQGFFIS 418 Query: 437 ALRR 440 + Sbjct: 419 KFVK 422 >gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria lactamica ATCC 23970] gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria lactamica ATCC 23970] Length = 419 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHI 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLSRHNDA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|313200002|ref|YP_004038660.1| fmu (sun) domain-containing protein [Methylovorus sp. MP688] gi|312439318|gb|ADQ83424.1| Fmu (Sun) domain protein [Methylovorus sp. MP688] Length = 432 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 171/455 (37%), Gaps = 61/455 (13%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L+ ++ +L + ++ L +++ V V LR + + D Sbjct: 10 RFAGTALADILAGTGPADAVLGSFFRNNR--ELGTKERAFVAESVYGVLRRKRLLSYLAD 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L + L+RV Q + L + + E A+ K Sbjct: 68 GDDPRKL-----LVAWLVRV---QGMSLRDLEDTLNTQQKEWAQEIK------------- 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 K +A + +P+W E+L YG E+ L I+ + +DL V Sbjct: 107 -----AKNTDNLSLAIQADMPDWLWEKLSAQYGDEQALTIARSMQQQAMMDLRVNTIKAT 161 Query: 186 IETWAHKLNAVMLPTGGIRLKELP-----------ESIVSLPGFAEGVWWVQDASASIPV 234 E K + + P +I F EG VQD + + Sbjct: 162 REDVLAKFISENTQLNQDTILPTPLSPTGIRLPQRLNISRHILFTEGKVEVQDEGSQLLA 221 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L + DLCA GGKT + + + ++ A D+S++RL L L R L Sbjct: 222 HLVAPRRGEMIADLCAGAGGKTLAMGALMRNTGRLYAFDISEKRLTNLGQRLKRSGLSNL 281 Query: 292 DII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 E DA F+ VLVDAPCS GT+RR+PD+ W + D+++ Q + Sbjct: 282 HSQLISSEQDAKLKRLNGKFNRVLVDAPCSGLGTLRRNPDLKWRQTPQDVLELTGKQTSI 341 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + VK GG ++++ CSL ++E + L + P +L+P N + + + Sbjct: 342 LARAAKLVKAGGRLIYATCSLLSDENEAIADAFLAAHP-DFKLIPANEVLAQ---QQIPV 397 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++++ P + DGFFA + Sbjct: 398 DTGEYLKLLPHL--------HQTDGFFAAVFEKAA 424 >gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 1_1_41FAA] gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp. 1_1_41FAA] Length = 434 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 104/454 (22%), Positives = 198/454 (43%), Gaps = 42/454 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M+ + V+ L+S V K +L+ + + L+ +++ + I LR +D Sbjct: 1 MSVKYVAMKLISFVD-KGSYSNIVLNDAFKE---FYLTAKEKAFITEIFYGVLRNKNFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ Q+ ++ VV A E AK+ +K + Sbjct: 57 YMIEKNTKV---IKKEWIRNLLRISIYQLTFMSSDAKGVVWEATEIAKKH--GIAISKFI 111 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + IP++F + LE YG E + + Y+ Sbjct: 112 NGTLRNYLRNKDLEIKKLHDEKNYEILYSIPQYFCDILEKQYGSENLNQAIISLKKIPYL 171 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV--------SLPGFAEGVWWVQDASA 230 + V + ++ + L I++ + +S+ + F G QDAS+ Sbjct: 172 SVRV--NKLKYSEEEFEEFLKEKDIQIIKKVDSVYYINSGLIINSKEFKVGKIIAQDASS 229 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + G N VLD+CAAPGGKTA + + + ++ A+D+ + + + + N+ +L Sbjct: 230 YLAAKNLGVKPNELVLDICAAPGGKTAVLAEEMENKGEIIAIDIHQHKKKLIEENMKKLG 289 Query: 288 LYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + +D + FD +LVD PCS G IR+ P++L+T++ ++I + A Q + Sbjct: 290 IDIVKATVLDARNVNKQGRKFDKILVDVPCSGYGVIRKKPEILYTKNRENIEELASLQLE 349 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L +K GG +++S C++ Q++ E V+K L A +++ Sbjct: 350 ILNSAADILKDGGELIYSTCTIIFQENTENVEKFLNERKEFKV-----KALNIPENVSGE 404 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I + MD F+ + L + Sbjct: 405 YDKLGGFSI--------NYKEEIMDNFYIIKLVK 430 >gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291] gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291] Length = 419 Score = 199 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 194/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLAASCKKDDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARRQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQVLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|300705521|ref|YP_003747124.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum CFBP2957] gi|299073185|emb|CBJ44543.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Ralstonia solanacearum CFBP2957] Length = 443 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 107/438 (24%), Positives = 168/438 (38%), Gaps = 34/438 (7%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ +L +D + V+ + T R+L D ++ ++ Sbjct: 22 LRQGTALPQAIDAACAGQPGPT-----RGAVQDLAYRTTRWLGSADWLIRTLIPRPPAED 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + + VVD AV A D + H +VN +LRR RE+ Sbjct: 77 TA---NLLRVALAQLLDTPLPYAPFTVVDQAVRAASADPKLAHAKGMVNGVLRRFLREQG 133 Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 +L+ + P W+ + Y + ++ P + + V + Sbjct: 134 DLVAAMQADPVAATNYPAWWISAVREAYPEAWQAILAAGNRRPPMVLRVNPRRVPVDAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + LPGFAEG VQDA A + L VL Sbjct: 194 ARLAEAGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT + G V AL+ R E++ NL RL A + Sbjct: 254 DACAAPGGKTGHLLELADGLDVVALESDGARAERIGENLARLGQTATVCVGDAAKPDAWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +LVD PCS+ G +RRHPD+ W R D+ A QR ++ + +KPGG +V Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPSDLPALAALQRDIVSALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E V+ + L + + A + P Sbjct: 374 YVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPATPEAAPVGGFVPGVSSLP----- 428 Query: 423 IDGVSSGMDGFFAVALRR 440 DGF+ ++ Sbjct: 429 -----LDHDGFYYAVFQK 441 >gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140] gi|240113994|ref|ZP_04728484.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1] Length = 417 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 61 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL + E + LPGFAEG+ VQD A Sbjct: 177 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416 >gi|239997893|ref|ZP_04717817.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02] gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] Length = 419 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLAASCKKDDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|240124641|ref|ZP_04737527.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae NCCP11945] Length = 417 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 61 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 VLRRFLREREKLAASCKKDDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL + E + LPGFAEG+ VQD A Sbjct: 177 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416 >gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18] gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11] gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11] Length = 419 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKNDVAKYNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLAVEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|217970240|ref|YP_002355474.1| Fmu (Sun) domain protein [Thauera sp. MZ1T] gi|217507567|gb|ACK54578.1| Fmu (Sun) domain protein [Thauera sp. MZ1T] Length = 447 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 95/446 (21%), Positives = 165/446 (36%), Gaps = 55/446 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ L V+ +L + D+ L RD+ + V + Sbjct: 37 ATQALGAVLAFDYPADAVLSRHFRDNR--ELGHRDRGFIAEAVYGV---------LRRLR 85 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + + + LL + + + A Sbjct: 86 WLRRIAGAEATPRMLLLA-----WFARGEGWP-----------MRNFEGLASATERDWIT 129 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIE 187 + +A + +P+W ERL + +LA++ P +DL V D + Sbjct: 130 SIKAAEAGEPSLAERADLPDWLAERLLAQMDGDELLALAHGLNRPAPLDLRVNLIKSDRD 189 Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L A + RL ++ P F +G + VQD + + L Sbjct: 190 ALLERLQADGVRAEPGRLSPQAIRLAGKPALQKHPLFLDGSFEVQDEGSQLLGLLVQPRR 249 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294 V+D CA GGKT Q ++ S ++ A DVS++RL KL+ + R L Sbjct: 250 GELVVDFCAGAGGKTLQLGAMMRSTGRLYAFDVSEKRLAKLKPRMARAGLSNVHPVLIAH 309 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E DA D VLVDAPC+ GT+RR+PD+ W + + + Q +L Sbjct: 310 EADAKVKRLAGKADRVLVDAPCTGLGTLRRNPDLKWRQSPAAVEEMVAKQGAILAAAARV 369 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V+PGG +V++ CSL ++++ +V L + P L + + + +R Sbjct: 370 VRPGGRLVYATCSLLAEENDGIVDAFLAAHPEFRALSAQEVLAAQGVALETGER----LR 425 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + DGFFA + R Sbjct: 426 LLPHV--------HDTDGFFAAVMER 443 >gi|253997937|ref|YP_003050000.1| Fmu (Sun) domain-containing protein [Methylovorus sp. SIP3-4] gi|253984616|gb|ACT49473.1| Fmu (Sun) domain protein [Methylovorus sp. SIP3-4] Length = 432 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 100/453 (22%), Positives = 171/453 (37%), Gaps = 61/453 (13%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L+ ++ +L + ++ L +++ V V LR + + D Sbjct: 10 RFAGTALADILAGTGPADAVLGSFFRNNR--ELGTKERAFVAESVYGVLRRKRLLSYLAD 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L + L+RV Q + L + + E A+ K Sbjct: 68 GDDPRKL-----LVAWLVRV---QGMSLRDLEDTLNTQQKEWAQEIK------------- 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 K +A + +P+W E+L YG E+ L I+ + +DL V Sbjct: 107 -----AKNTDNLSLAIQADMPDWLWEKLSAQYGDEQALTIARSMQQQAMMDLRVNTIKAT 161 Query: 186 IETWAHKLNAVMLPTGGIRLKELP-----------ESIVSLPGFAEGVWWVQDASASIPV 234 E K + + P +I F EG VQD + + Sbjct: 162 REDVLAKFISENTQLNQDTIVPTPLSPTGIRLPQRLNISRHILFTEGKVEVQDEGSQLLA 221 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L + DLCA GGKT + + + ++ A D+S++RL L L R L Sbjct: 222 HLVAPRRGEMIADLCAGAGGKTLAMGALMRNTGRLYAFDISEKRLTNLGQRLKRSGLSNL 281 Query: 292 DII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 E DA F+ VLVDAPCS GT+RR+PD+ W + D+++ Q + Sbjct: 282 HSQLISSEQDAKLKRLNGKFNRVLVDAPCSGLGTLRRNPDLKWRQTPQDVLELKGKQTSI 341 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + VK GG ++++ CSL ++E + L + P +L+P N + + + Sbjct: 342 LARAAKLVKAGGRLIYATCSLLSDENEAIADAFLAAHP-DFKLIPANEVLAQ---QQIPV 397 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++++ P + DGFFA + Sbjct: 398 DTGEYLKLLPHL--------HQTDGFFAAVFEK 422 >gi|149928076|ref|ZP_01916323.1| NOL1/NOP2/sun family protein [Limnobacter sp. MED105] gi|149823162|gb|EDM82399.1| NOL1/NOP2/sun family protein [Limnobacter sp. MED105] Length = 448 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 95/446 (21%), Positives = 165/446 (36%), Gaps = 52/446 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + L+ + + + + D L RD+ +V V LR+ RI+ + Sbjct: 36 VAQLIDLLAQFEGPADAAISRFFKDHP--ELGGRDRPMVAEAVYCWLRYRYRINHLAQ-- 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + LL + A + +N ++++N Sbjct: 92 SGEGPSVVRQAKLALLWSGA--------------PEQIWSAGKQADNEWLSRVINISADD 137 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + + +PEWF +L +G+ER + S A +S +DL V + Sbjct: 138 LGV---------EARTCLPEWFYTKLAEQFGQERAESFSQAVLSAAPLDLRVNTVKASTT 188 Query: 191 HKLNAVMLPTGGIRLKELPES---------IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 L A+ + E + F EG + VQDA + +L Sbjct: 189 DLLAALTNMGIQVNPIEGLPEGLRAVGKPIVGKTEVFQEGYFEVQDAGSQWVSRLVAPRR 248 Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 V+D CA GGK + + ++ ALD S++RL K + R L + Sbjct: 249 GDLVIDFCAGAGGKTLAIGAQMKNTGRIVALDTSEKRLVKFKPRAARSGLSNFYTMVIND 308 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D D V+ D PCS GT+RR+PD+ + ++ + + Q+ ++ Sbjct: 309 EADPRLNKYFGKADRVVTDVPCSGMGTLRRNPDLKFRQNLQSLSELTAKQKSIIEHAAKL 368 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VKP G +V+ CS+ + ++E++V L S P L A + + +R Sbjct: 369 VKPDGRLVYITCSVLRDENEDIVNAFLESHP-EFRLRRWTEVLNPGERPVKANTTDDMLR 427 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P DGFFA L+R Sbjct: 428 LWP--------EDGESDGFFAAVLQR 445 >gi|240124490|ref|ZP_04737446.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID332] Length = 417 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 61 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 177 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416 >gi|240081718|ref|ZP_04726261.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19] gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332] gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107] Length = 419 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARRQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella denitrificans ATCC 33394] gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella denitrificans ATCC 33394] Length = 421 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 111/445 (24%), Positives = 186/445 (41%), Gaps = 50/445 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ + + V +L+ L LS +D+ +++ + RF + +L+ Sbjct: 9 LAAQIFTAV-HGGQNLSDELGRVLAGEP--ALSAQDKGMLQDLAYGCQRFYGSLHFMLNR 65 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 +L + L L V++ Q+ + A YAVV+ V + ++ + N+ILR Sbjct: 66 LLNKPVD--NPLLYAHLLVALYQLNHTRNAPYAVVNETVRHIGKIGRGQYRS-FANAILR 122 Query: 130 RVSRE----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV--- 182 R RE +P W K L+ Y K I+ A + L V Sbjct: 123 RFLREREGLNKAARFDDTAKYNLPAWLKSSLQQQYPKHW-HNIAAAFQMHPPLTLRVNRR 181 Query: 183 KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + E +A L + + LP FAEG VQD A L Sbjct: 182 YGNAERYAALLQQAGIEAKILDDYAVRLNEAVPVQQLPQFAEGHVSVQDWGAQQAAYLLQ 241 Query: 239 TLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIE 295 NN +LD CAAPGGKT + ++ +TALD+ RL++++ NL RL L+A Sbjct: 242 PQNNERILDACAAPGGKTGHILEMADCALTALDIDPVRLQRVQDNLTRLGLHAQLHCAAA 301 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + D+ + FDA+L D PC+++GTI+R+PD+ W R +D K+A Q LL + + Sbjct: 302 QNLDDWWDGQPFDAILADVPCTASGTIKRNPDIKWLRRPNDAAKTARQQEILLDRLWQTL 361 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KPGG ++ + CSL +++ Q L+ P + + Sbjct: 362 KPGGRMLLATCSLFHEENGRQCQNFLQRHPDAQL--------------------QQEQTL 401 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P+ + DGF+ + + Sbjct: 402 LPNDKQ---------DGFYYALISK 417 >gi|83945242|ref|ZP_00957591.1| sun family protein [Oceanicaulis alexandrii HTCC2633] gi|83851412|gb|EAP89268.1| sun family protein [Oceanicaulis alexandrii HTCC2633] Length = 438 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 99/458 (21%), Positives = 160/458 (34%), Gaps = 59/458 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L VM + + L F D+ + +V LR + V+ Sbjct: 10 AIEVLDAVMNRHQPVKDALRDWGKAHRFAG--SGDRAWMSGLVLDALRRRGFLRHVMGED 67 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + L+ +++ +D + E A A L N Sbjct: 68 TP----------RALVLGALSYAWGMDATAISATFEGDEHAPDPLTEAEIAGLSNGAPED 117 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 ++ +PEW E YG + A +DL V Sbjct: 118 TPLHI---------LADVPEWLGPSFERAYGADAAA-EGQAMAGRAPVDLRVNRLKAEPD 167 Query: 191 HKLNAVMLPTGGIRLKELPES---------------IVSLPGFAEGVWWVQDASASIPVQ 235 AV I + +L S+P F +G VQD + + Sbjct: 168 KAFGAVSSKIKTIEVSDLTLDGLRIPETDPRAKAPGAESIPAFGKGWVEVQDIGSQLAAL 227 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G + VLD CA GGKT + L+ + ++ A D RRL + L R Sbjct: 228 AAGDIKGAQVLDYCAGAGGKTLALSALMENTGQLYAWDYDGRRLRAIWPRLQRSGARNVQ 287 Query: 293 IIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + + D V +DAPCS +GT RR PD W + + Q ++L + Sbjct: 288 VRDGKEAETLGDLEGKLDCVFMDAPCSGSGTWRRRPDSKWRLKEEAFKRRQSEQDEVLSK 347 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 FVKPGG +V+ CS+ +++E+ V L + P VP + A +S +A Sbjct: 348 AWRFVKPGGRLVYVTCSVLPEENEDRVAAFLEAHP-KFTPVPASDAIAQSGRLAEGAQER 406 Query: 411 --------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I++TP +G DGF+ + R Sbjct: 407 LKVLEGRFGAIQLTPH--------RTGTDGFYVCVMER 436 >gi|313837734|gb|EFS75448.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL037PA2] gi|314927384|gb|EFS91215.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL044PA1] gi|314972672|gb|EFT16769.1| putative ribosomal RNA small subunit methyltransferase B [Propionibacterium acnes HL037PA3] gi|328907468|gb|EGG27234.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium sp. P08] Length = 458 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 100/464 (21%), Positives = 177/464 (38%), Gaps = 37/464 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L V L + + ++ RD V +V+ T R Sbjct: 10 RKADPARRLAYTALLAVETHGAYANLALADQLRAAK---MTGRDAAFVTELVDGTSRGTG 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + + + ++ +LR++ QIL + V A V +V+ A + R Sbjct: 67 TWDRIIEVASRRNPTKLQPGVRVMLRMAAHQILAMRVPTRAAVASSVDLAGQVIGER-VT 125 Query: 122 KLVNSILRRVSREKIELLQRI----------AGISIIPEWFKERLENFYGKERVLAISDA 171 LVN++ RR+S ++ A ++ P W E ++ G V A Sbjct: 126 GLVNAVSRRISTHSLDEWATEIGGRNAVDVLALRTLHPTWIVEAFQDRLGPNEVEDALLA 185 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L V+ + A + + P + + EG VQD + Sbjct: 186 DNEPPVPTLVVRPGLAERAEIASGTPTRYSPWGVAR-PGNPSEVAAVREGRAGVQDEGSQ 244 Query: 232 IPVQLFGTL-----NNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLRCN 282 + V LDLCA PGGK + +TA+++ + R + + Sbjct: 245 LVVLALLRAAEASGCLGPWLDLCAGPGGKSALLAGLANQRDSSLTAVELHEHRADLVAKA 304 Query: 283 LDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L + ++ D P + F AVL D PCS G++RR P+ W R D+ + Sbjct: 305 L-KPIPGNHRVMTADGTRPPLPAQSFAAVLADVPCSGLGSLRRRPEARWRRTLTDVKELT 363 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+LL ++ +PGG+V + CS + ++ +++ + P+ V P A I Sbjct: 364 QLQRRLLTSAVNLTRPGGVVGYVTCSPHRAETIDIINFARATLPVDVLNAP---AMLPDI 420 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 A I++ P G D F LR+ + + Sbjct: 421 PNIAASGNSNTIQLWPH--------RHGTDAMFCALLRKRNESE 456 >gi|59802189|ref|YP_208901.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090] Length = 419 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14] gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14] gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M04-240196] Length = 419 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLASSCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18] gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18] gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153] gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M6190] gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ES14902] gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis 961-5945] gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis G2136] Length = 419 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A +P E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442] gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442] Length = 419 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 112/449 (24%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSVAAV-AEGRNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ATCC 13091] gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ATCC 13091] gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240355] Length = 419 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|309780267|ref|ZP_07675018.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp. 5_7_47FAA] gi|308920970|gb|EFP66616.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp. 5_7_47FAA] Length = 443 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 105/447 (23%), Positives = 170/447 (38%), Gaps = 35/447 (7%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ L +R+ +L +D + + V+ + R+L D ++ Sbjct: 14 LAAVALGK-LRQGTALPQAIDAVCQGQPAPV-----RGAVQDLAYRATRWLGSTDWLIRT 67 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSI 127 ++ LLRV++AQ+L + VVD V A D + H +VN + Sbjct: 68 LIPRPPAEGAA---NLLRVALAQLLDDPQPYAPFTVVDQTVTAASADPKLSHGKGMVNGV 124 Query: 128 LRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI----- 178 LRR RE+ ++ + + P W+ + + + Y ++ P + Sbjct: 125 LRRFLREQHALVADMQADPSAATNYPMWWIDAVRSAYPDAWQTILAAGNRRPPMVLRVNP 184 Query: 179 -DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + V + A + LPGFA+G VQDA A + Sbjct: 185 RRIAVSAYLARLAEAGIDAERIGEQAVRLARAVPVSELPGFADGAVSVQDAGAQLAATFL 244 Query: 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 VLD CAAPGGKT + G VTAL+ R ++ NL RL+ A Sbjct: 245 DVAPGQRVLDACAAPGGKTGHLLELADGLDVTALESDAARAVRIHENLARLNQSATICVG 304 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + FD +L D PCS+ G +RRHPD+ W R D+ A QR ++ + Sbjct: 305 DAAKPDTWWDGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALAGLQRDIVRALWA 364 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +KPGG +V+ CS+ + E+ Q R + L S D A Sbjct: 365 CLKPGGKLVYVTCSIFPTEGEDQAQWFERHLEDAIRLHAPGQLLPVSPDAAQTS------ 418 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGFF ++ Sbjct: 419 ----GFAAGASPLPLDHDGFFYAVFQK 441 >gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2] gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2] Length = 450 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 97/454 (21%), Positives = 177/454 (38%), Gaps = 37/454 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + L V K +S L+ + R + + A V ++ +ID +++ Sbjct: 11 EIVADALMLVEEKELSSKHALERIFRKVEGRDRETA-RGIAHAYVFEIEKWRAKIDFIIN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120 VL S + L LLR+ V ++ + V VV + + N Sbjct: 70 SVLKGSRVEDLDPYLANLLRIGVFEMKFKGVNPAIATDSIVRVVKEKFDLTRAKFANAIL 129 Query: 121 AK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + N ++ + + ++ P W+ E + N G + + + + + P Sbjct: 130 REVEKFNVEKALRKLKEKDRIVWLSIRFSHPRWYVEYVVNLLGYDEAVRLLLSNMRPQRY 189 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D++ L + + + + + L + +G + +QD + Sbjct: 190 YVRVNTLKADVDKVRKYLEDNGVKVSLTPVDDVLKVLDYEKPVTKLEWYKKGYFVIQDLA 249 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + VLDL AAPG KT + + ++ A+D S RL K++ + L Sbjct: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKIL 309 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ D + K FD V++DAPCSS+GT R+ P+V W D + I + QR Sbjct: 310 GVKNVKLVHADGQSFLDKDKFDKVILDAPCSSSGTYRQFPEVKWRFDEEKIKRIINVQRN 369 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +LL +K GG + +S CS+ ++EE V L ELV N ++ D Sbjct: 370 MLLNAYRNLKEGGEMTYSTCSIRIDENEENVIFALEK---GFELVDYNFSWG---DRGFL 423 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E R + FF LR+ Sbjct: 424 EIGEKVFRTWTHKHDCNS--------FFIAKLRK 449 >gi|292493781|ref|YP_003529220.1| sun protein [Nitrosococcus halophilus Nc4] gi|291582376|gb|ADE16833.1| sun protein [Nitrosococcus halophilus Nc4] Length = 440 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 117/454 (25%), Positives = 196/454 (43%), Gaps = 44/454 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R++++ +L+ V+ + SLT L L RDQ + + LR+LPR++ + Sbjct: 10 TRVIAATVLAQVLGQGRSLTAALPPAVAH-----LPDRDQAFTQTLCYGVLRWLPRLEYL 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +L L + L LL + + Q+ L + +A + V A+ KL+N+ Sbjct: 65 AQKLLRKPLRARDVDLYSLLLLGLYQLTELGIPSHAALSETVAAAES-LGKPWAKKLINA 123 Query: 127 ILRRVSREKIELLQRIAGI----SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILR R ++ L ++A S P W E + + + I A + L V Sbjct: 124 ILRAYLRNQVALQAQVATHEVAHSAHPRWLLEAIRRSWPDDW-SQIIAANNCHPPLSLRV 182 Query: 183 ---KFDIETWAHKLNA------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + ++ +L + T + + P + +LPGF EG VQD + Sbjct: 183 NRLQGSRASYLQELERNGIEARAIPHTEWGVVLDQPRPVTTLPGFLEGRVSVQDGAGQRV 242 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYA 290 L VLD CAAPGGKT ++ ++ ALD+ RLE+L NL RL L A Sbjct: 243 APLLALAPGQRVLDACAAPGGKTCHILELEPQLETLIALDLEAVRLERLDSNLKRLQLKA 302 Query: 291 ----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + FD +L+DAPCS +G IRRHPD+ R DI Q++ Sbjct: 303 KAQVVQGDAAQPQTWWDGIPFDRILLDAPCSGSGVIRRHPDIKVLRRERDIPPLVVLQKR 362 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + PGG++++ CS+ Q++E+ +++ L + P E + +++ Sbjct: 363 LLSALWPLLAPGGLLLYCTCSILPQENEQQIREFLLAHPEGKE---------RPLEVPWG 413 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L ++ + G+DGF+ L + Sbjct: 414 LPQIPGRQLL--------TGAEGLDGFYYACLEK 439 >gi|82703733|ref|YP_413299.1| Fmu (Sun) NOL1/Nop2p [Nitrosospira multiformis ATCC 25196] gi|82411798|gb|ABB75907.1| Fmu (Sun) NOL1/Nop2p [Nitrosospira multiformis ATCC 25196] Length = 423 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 164/445 (36%), Gaps = 56/445 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ L V+ + LL + D+ L D+ + IV LR ++ V++ Sbjct: 13 ATAALRTVLPLQRPADSLLRHFFQDNR--KLGVHDRAFIAEIVFGILRHRFFLERVVEIA 70 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 S L ++ YL + + R S+ + Sbjct: 71 TPRS-----------LLLA-----YLAKFSGMNLRELTPLVSETEAKRLAEMKAVSLESQ 114 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 + PEW E+L F +L + + +P +DL V E Sbjct: 115 PLGV----------QAEFPEWLLEKLREFMDDGAILDLGRSLQAPAPLDLRVNTQLATRE 164 Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 L + +I F G VQD S+ + L Sbjct: 165 EVIELLRKDGIEGMPTPYSPLGIRLTGKPAINRHEAFMSGKIEVQDESSQLLGYLLAPRR 224 Query: 242 NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294 V+D CA GGK+ L + S ++ A D S++RL L+ L R L Sbjct: 225 RDMVVDFCAGAGGKSLMLGALMCSQGRIYAFDNSEKRLNNLKPRLKRSGLSNLHPQLIAN 284 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D D VLVDAPCS GT+RR+PD+ W + I + C Q +L + Sbjct: 285 ENDIKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQSIEELKCKQTAILSSAANL 344 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +KPGG +V++ CS ++++E+V+ + ++P L + I + + +++ Sbjct: 345 LKPGGRLVYATCSFLPEENQEIVENFIANNPRFTLLNCAELLRQQKIPLDTGV----FMQ 400 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALR 439 + P G DGFFA AL Sbjct: 401 LLP--------RLHGTDGFFAAALE 417 >gi|296129702|ref|YP_003636952.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109] gi|296021517|gb|ADG74753.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109] Length = 509 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 106/477 (22%), Positives = 172/477 (36%), Gaps = 50/477 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + L V +L + R L+ RD + TLR Sbjct: 44 RTSDPARAAAYDTLRAVAESEAYANLVLPPLLRE---RGLAGRDAAFATELAYGTLRLRG 100 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R DAVL L + +LR+ Q+L + V +A V V A+ A Sbjct: 101 RYDAVLAQASSRPLDEVDPPVLDVLRLGAHQLLGMRVPAHAAVSETVGLARERVG-AGAA 159 Query: 122 KLVNSILRRVSREKIELLQRI----------------AGISIIPEWFKERLENF-----Y 160 + VN++LRRV+ +E A + P W L Sbjct: 160 QFVNAVLRRVAERPLEEWLTRVADAADPGGADTVARLAAVESHPAWVVRALRESLVGSGR 219 Query: 161 GKERVLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 + A A +P + L + + + A + AV L +P Sbjct: 220 PAAELAAALVADNAPPRVTLVARPGLVSSQELAEQSGAVPAGLAPTALVLSGGDPGDVPA 279 Query: 218 FAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTAL 269 +G+ VQD + V+ + LD+CA P A GA++ A Sbjct: 280 VRDGLAGVQDEGSQLVTLAFVEAEVAGRDERWLDMCAGPGGKAALLGALAAQRGARLVAN 339 Query: 270 DVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326 +V R +R L + A ++ DA + +D VL+DAPC+ G +RR P Sbjct: 340 EVQPHRARLVRQALRAVPGEAVEEVRTGDARTVGELEPGAYDRVLLDAPCTGLGALRRRP 399 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV---QKVLRS 383 + W R D+ A QR+LL ++ V+PGG+V + CS +++ VV + Sbjct: 400 ESRWRRTPADLATLAALQRELLASAVAAVRPGGVVGYVTCSPHLAETQLVVLDAVRAAAR 459 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + PV +V + + +++ P + G D LRR Sbjct: 460 AGTPVAVVDAAPVMARVAPAWEPVPGRQDVQLWPHV--------HGTDAMHLTLLRR 508 >gi|237748561|ref|ZP_04579041.1| sun family protein [Oxalobacter formigenes OXCC13] gi|229379923|gb|EEO30014.1| sun family protein [Oxalobacter formigenes OXCC13] Length = 418 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 91/445 (20%), Positives = 166/445 (37%), Gaps = 56/445 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L V++ ++ + + L R++ V V LR + + Sbjct: 13 QVLREVLQFSGPADVVISRYFREHP--KLGMRERGAVAEAVYAILRNRL----IYNNFSE 66 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S +++L+ + +A I +D + Sbjct: 67 SGY---GPQMRRLVLLGLADIYGVDSIGGIDENETAWL-------------------NHV 104 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + + +PEW +RL G+E ++ +P +DL + + Sbjct: 105 SKVDRSQLPQKMQANLPEWLYDRLAEQIGEEETGKLAAVLNTPAPLDLRINTLKIKPDEV 164 Query: 190 AHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L+ V + + ++ ++P F +G VQD + + Q+ G Sbjct: 165 MKVLSEVPVECAPTPFASTGIRLQKKIALQNMPLFRDGGVEVQDEGSQLLAQIVGAKRGE 224 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT + + ++ A DVS +RL K++ L R L E Sbjct: 225 MVVDFCAGAGGKTLALGCAMRNTGRLYAFDVSDKRLAKMKPRLARSGLSNVHPIQIAHER 284 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VL+D+PCS GT+RR+PD+ W + + I + Q +L VK Sbjct: 285 DARIKRLAGKADRVLIDSPCSGLGTLRRNPDLKWRQTPETITEMTEKQHAILESAARLVK 344 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CSL + +++ +V+ L+ LVP++ ++++ Sbjct: 345 VGGRLVYATCSLLEDENDRIVEDFLKK-DDRFALVPMSKVLADGKVNLEMGD---YLKLM 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P DGFFA R+ Sbjct: 401 PH--------QHQTDGFFAAVFERV 417 >gi|241664927|ref|YP_002983287.1| sun protein [Ralstonia pickettii 12D] gi|240866954|gb|ACS64615.1| sun protein [Ralstonia pickettii 12D] Length = 443 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 104/438 (23%), Positives = 169/438 (38%), Gaps = 34/438 (7%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ +L +D + + V+ + R+L D ++ ++ Sbjct: 22 LRQGTALPQAIDAVCQGQPAPV-----RGAVQDLAYRATRWLGSTDWLIRTLIPRPPAEG 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + + VVD V A D + H ++N +LRR RE+ Sbjct: 77 AA---NLLRVALAQLLDDPLPYAPFTVVDQTVTAASADPKLSHGKGMINGVLRRFLREQQ 133 Query: 137 ----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 ++ + + P W+ + + + Y ++ P + + V + Sbjct: 134 ALVADMQADPSAATNYPTWWIDAVRSAYPDTWQTILAAGNRRPPMVLRVNPRRIAVDAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + A + LPGFA+G VQDA A + L VL Sbjct: 194 ASLAEAGIDAERIGEQAVRLARAVPVSELPGFADGAVSVQDAGAQLAATLLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT + G VTAL+ R ++ NL RL+ A + Sbjct: 254 DACAAPGGKTGHLLELADGLDVTALESDAARAVRIHENLARLNQSATICVGDAAKPDTWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +L D PCS+ G +RRHPD+ W R D+ A QR ++ + +KPGG +V Sbjct: 314 DGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALAGLQRDIVRALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E+ Q R + L S D A Sbjct: 374 YVTCSIFPTEGEDQAQWFERHLEDAIRLHAPGQLLPVSPDAAQTS----------GFAAG 423 Query: 423 IDGVSSGMDGFFAVALRR 440 + DGFF ++ Sbjct: 424 ASPLPLDHDGFFYAVFQK 441 >gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] Length = 421 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 108/447 (24%), Positives = 184/447 (41%), Gaps = 50/447 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ L V +L+ L + LS +D+ +++ I RF + +L Sbjct: 9 LATQTLFAVE-NGKNLSDELAHIIVQNP--ELSPQDKGMLQDIAYGCQRFSGSLKYMLGK 65 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 +L + L+ L V++ Q+ Y A +AVV+ AV + ++ + N+ILR Sbjct: 66 LLNKPID--NKVLEHYLLVALYQLNYTRNAPHAVVNEAVSNIAKIGRGQYRS-FANAILR 122 Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 R RE+ +P W + L+N Y K + A S + L V Sbjct: 123 RFLREQDGLNKACQFNDVAKYNLPIWLIQLLKNQYPKHW-HNMVTAFQSRPPLTLRVNRR 181 Query: 186 IE------TWAHKLNAVMLPTGGIRLKEL-PESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +LN ++ P + LP F EGV VQD A L Sbjct: 182 HANSEQYFKLLQELNIQAKVLDEYAIRITEPIPVNQLPKFTEGVVSVQDFGAQQAAYLLN 241 Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 VLD CAAPGGKT ++ + V ALD+ +RL +++ NL RL+ A Sbjct: 242 PQAGERVLDACAAPGGKTGHILELADCDVVALDIDNKRLARVQENLSRLNFQATLHCAPA 301 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + ++ + FDA+L D PC+++GT++R+PD+ W R D +K+A Q +L + + Sbjct: 302 ENVHEWWDGQPFDAILADVPCTASGTMKRNPDIKWLRRPTDALKTAKQQEAMLDELWGTL 361 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG ++ + CS+ +++ QK + + L E + Sbjct: 362 KVGGRMLLATCSIFAEENSLQCQKFNKRHNDAI------------------LQEEKML-- 401 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 P+ + DGF+ + Sbjct: 402 LPNEKQ---------DGFYYALFVKQA 419 >gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240013] Length = 419 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] gi|133911307|emb|CAM01420.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 430 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 94/447 (21%), Positives = 154/447 (34%), Gaps = 43/447 (9%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + + L R +S RD L + R +DAV+ L Sbjct: 1 MRDRDAYANLALPALLK---QRRISGRDAALATELTYGACRAQGLLDAVIGECSARPLDG 57 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 L LR+ Q+L + +A V V+ + + +R A N++LRR+S + Sbjct: 58 IDPELLDALRLGAYQLLRTRIPAHAAVASTVDIVRAESGSRQ-AGFANAVLRRISERDEQ 116 Query: 138 LLQ-------------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +A P W + + G + + + Sbjct: 117 EWIDRLAPARDDDPVGHLALRYAHPRWIAQSFADALGSVGAELEAALAADDARPAVHLTA 176 Query: 185 DIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS----IP 233 + + + G+ L L EG VQD + Sbjct: 177 RPGEISAEELAAITGGDEAPYSPYGVHLDSGAGDPGDLEPVREGFASVQDEGSQLVAVAL 236 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 ++ +L LDLCA PGGK L LD ++ + + + Sbjct: 237 SRVEVQGPDLRWLDLCAGPGGKANLLGSLVTMDGGTLDAVEQAPHRADLVRRSTDGLSVE 296 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D D + +D VLVDAPC+ G +RR P+ W R DD+ + A QR+LLL + Sbjct: 297 VHVADGRDPGLEPGYDRVLVDAPCTGLGALRRRPEARWRRRPDDVAELAKLQRELLLSAV 356 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + GG+V + CS ++E VV V+R VE + + D+ + Sbjct: 357 RLTREGGVVAYVVCSPHLSETEGVVSDVVRR--AGVEQLDARPYFPGVPDLGDGPA---- 410 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ P G D F LR Sbjct: 411 VQLWPH--------RHGTDAMFCALLR 429 >gi|296157162|ref|ZP_06839998.1| Fmu (Sun) domain protein [Burkholderia sp. Ch1-1] gi|295892498|gb|EFG72280.1| Fmu (Sun) domain protein [Burkholderia sp. Ch1-1] Length = 419 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 90/443 (20%), Positives = 156/443 (35%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F Sbjct: 72 PARRMA-------LLGLMQ------------------TAGRNALKPFVSEQELSWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + +P+W + L + + + ++ A P +DL + Sbjct: 107 KIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKASRDDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + L+ + G + L F G VQD + + L Sbjct: 167 NALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 SKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VV++ L P + + + ID+ M ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGD----YLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|307947083|ref|ZP_07662418.1| Sun protein [Roseibium sp. TrichSKD4] gi|307770747|gb|EFO29973.1| Sun protein [Roseibium sp. TrichSKD4] Length = 430 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 156/453 (34%), Gaps = 34/453 (7%) Query: 1 MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK G RL ++ +L + + L F D+ + +V LR Sbjct: 1 MKDGG--RLAAAIEVLDEIENRHRPAQVALKDWGNQHRFAG--SGDRTAIGNLVFDVLRH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + A L L + V +++ + V A ++ Sbjct: 57 KASLSARLRSTTNR-----------HLVLGVYALVWGKGMEQLDTVLETDRHAPEPLSDQ 105 Query: 119 H---FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 F+ S + + + + ++ + + + V ++ S Sbjct: 106 EKGLFSGQATSNIAAHAAADVPEWLWPSFVTCFGDKAVAEGKALATRAPVDLRANLLKSN 165 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L ++ A + L + + G+ +G + +QD ++ I Sbjct: 166 REKLLDKLSHVDAAACDVAETGLRIVPKPGALRMPHVQAEEGYRKGWFELQDEASQIVAA 225 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G VLD CA GGKT + + + ++ A D + RL + L R + Sbjct: 226 LSGAKPGAQVLDFCAGGGGKTLAMAGAMQNKGQIYAFDADRLRLAPIHERLQRAGVRNVQ 285 Query: 293 IIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + + D V DAPC+ TG RR PD W + QR +L + Sbjct: 286 VRDPAATNLTDLEGSMDLVFTDAPCTGTGVWRRRPDSKWRLTEKAVQDRIEDQRSVLGRA 345 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSP 409 +VKPGG +V+ CS+ +++ + + LR P V +A + ++ Sbjct: 346 AQYVKPGGRLVYVTCSVLPEENTDQIDWFLRQQPEFQSVSAAEAWTAAYPGKKAPTYIND 405 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G I +TP S+ DGFF L R Sbjct: 406 RGDILLTPG--------STDTDGFFCALLERRA 430 >gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 419 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L + +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVL--VHIRAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKYW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLSRHNDA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776] gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776] Length = 471 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 103/426 (24%), Positives = 167/426 (39%), Gaps = 50/426 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ ++L + + D + LS D+ L ++ +R + A+ Sbjct: 20 ARELAFNVLEAHHAGNKHIGEVFDQAVDRT---TLSPSDRRLAYELICGIVRRQSTLQAL 76 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L ++ + + LQ ++++ + QI L + +A V VE AKR + VN Sbjct: 77 LMSLVHRQMETLERPLQTIIKIGLYQIFLCQGIPQHAAVHETVELAKRANL--RWGGFVN 134 Query: 126 SILRRVSREKIELL--------------------------------QRIAGISIIPEWFK 153 +LR + E + IA P Sbjct: 135 GVLRSAIQLMTENILTAPSSKALPIGHHQYRELTTDLFPSPTLTPGSYIAAAFSFPHDLV 194 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE 210 ER YG E + ++ L V D ET+ KL A L E Sbjct: 195 ERWVGQYGVEATIRMAFWFNQVTETALRVNLLKTDRETFRQKLFAADFVAEAGDLPETIR 254 Query: 211 -----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 I +LPGF EG + VQD SA + VLDLCAAPG KT + + + Sbjct: 255 LLSTVRISTLPGFPEGEFSVQDLSAQHAARRLNPQPGEVVLDLCAAPGSKTCHMAELMQN 314 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGT 321 ++ A D R+ ++ N +RL L I + P FD VL D PCS+TG Sbjct: 315 QGEIIAADTHGGRIRQVYENAERLGLSIIRTITIGPRGENLPSMEFDKVLADVPCSNTGV 374 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + P+ W + + Q +L V+ GG +++S CS++ ++EE+VQ+ L Sbjct: 375 LGKRPEARWKYSPAHLDELREMQATILRTAAGKVRIGGRILYSTCSIEPLENEEIVQQFL 434 Query: 382 RSSPIP 387 ++ Sbjct: 435 AATSEA 440 >gi|330466983|ref|YP_004404726.1| Fmu (Sun) domain-containing protein [Verrucosispora maris AB-18-032] gi|328809954|gb|AEB44126.1| Fmu (Sun) domain-containing protein [Verrucosispora maris AB-18-032] Length = 450 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 94/449 (20%), Positives = 152/449 (33%), Gaps = 44/449 (9%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R +L + L RD + TLR +DA+L + R Sbjct: 17 RDDAYANLVLPSILRE---EGLFGRDAAFATELTYGTLRHSGTLDAILTSAAGRDVQRID 73 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 ++ LR+ Q+L+ V +A V V+ + + N++LR V+ ++ Sbjct: 74 PPVRDALRIGAYQLLHTRVPAHAAVSSTVDLVRMV--GQGATGFANAVLREVAACDLDTW 131 Query: 140 Q-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDACISPLYIDLTVKF 184 +A P+W + + + L + Sbjct: 132 VSRLAPSMETDPIGHLALAHSHPQWIVRAFSEALDGDLGETTRLLIENNERPPVHLCARP 191 Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 D A + + + A+G VQD + + Sbjct: 192 GLADPVELADASGGAPGAFSPYAVYLGGGAPGDVAAVADGRAHVQDEGSQLVANALAVAP 251 Query: 242 NL----SVLDLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 LDLCA PGGK A A+VTA++V++ R + L + Sbjct: 252 IDGPDGRWLDLCAGPGGKAGLLGALAAQRDARVTAVEVAEHRARLVEGATRGLPVTVLHT 311 Query: 294 IEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 P+ FD VLVDAPC+ G++RR P+ W R D+ QR+LL G Sbjct: 312 DGRLVGAEPKLPEGHFDRVLVDAPCTGLGSLRRRPESRWRRQPSDLPALTRLQRELLTAG 371 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + V+PGG+V + CS ++ V + R S V+ V + L Sbjct: 372 LRAVRPGGVVAYVTCSPHTVETHVTVTEAARRSGASVDFVDARPLLPAGMP---GLGDGP 428 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P G D F LRR Sbjct: 429 TVQLWPH--------RHGTDAMFLAVLRR 449 >gi|269956515|ref|YP_003326304.1| Fmu (Sun) domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269305196|gb|ACZ30746.1| Fmu (Sun) domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 517 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 103/480 (21%), Positives = 162/480 (33%), Gaps = 57/480 (11%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V +L + R ++ RD + TLR R DA Sbjct: 48 PARTAAFDVLRDVDGSDAYANLVLPPLLRE---RGITGRDAAFATELTYGTLRLRGRYDA 104 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L R + +LR+ QIL + V +A V V + ++LVN Sbjct: 105 ILTRCVDRPLDRLDPDVLDVLRLGAHQILGMRVPTHAAVSETVALTRDRVGT-GASQLVN 163 Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE---------R 164 ++LRRV+ + A P W L + Sbjct: 164 AVLRRVTTTPLTDWLDELRADAPDPVTASAVTGSHPVWIARALREALAADGRGGADLDAE 223 Query: 165 VLAISDACISPLYIDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 + A+ DA + + L + T + L + +S+P Sbjct: 224 LDALLDADNAAPRVTLVARPGLITPDDVRATAPDGITLHPGRWLPTALILGGQDPLSVPA 283 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNL----SVLDLCAAPGGKTA----QLIVSGAKVTAL 269 A+ VQD + LDLCA PGGK + GA + A Sbjct: 284 VADARAGVQDEGSQAVALALAAAPLEGRDARWLDLCAGPGGKASLLAALASQRGATIVAN 343 Query: 270 DVSKRR---LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 +V+ R + K + + + +D VLVDAPC+ G +RR P Sbjct: 344 EVAPHRANLVRKALRAIPDGVVEQVRTGDGRDVGEQEPGAYDRVLVDAPCTGLGALRRRP 403 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-- 384 + W R D+ QR LL + V+ GG+V + CS ++ VV VLR Sbjct: 404 ESRWRRTPADLSALTGLQRDLLSSALDAVRVGGVVAYVTCSPHLAETRVVVDDVLRRRAV 463 Query: 385 ---PIPVELVPLNSAYWK-SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P L + + + L +++ P + G D LRR Sbjct: 464 DGIPDAERLDAREAVRAIVNPGTDIPLGERDDVQLWPHV--------HGTDAMHLTLLRR 515 >gi|256830606|ref|YP_003159334.1| sun protein [Desulfomicrobium baculatum DSM 4028] gi|256579782|gb|ACU90918.1| sun protein [Desulfomicrobium baculatum DSM 4028] Length = 424 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 85/416 (20%), Positives = 157/416 (37%), Gaps = 28/416 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L + + L +D + D+ L + LR RID + Sbjct: 6 ARRLALDILRRTLDHKQDLQAAVDEVLNPVQ----AGPDKGLATELAYGYLRMRGRIDFL 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L +L + + + ++++L V++ ++L+L + DYA +D AV + + ++ K+ N Sbjct: 62 LSQLLKNPV-QTSPIMKRILGVAMYELLFLSRIPDYATLDWAVTLVRE-RLDQTMGKVAN 119 Query: 126 S-------------ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + Q ++ P+W YGKE+ A A Sbjct: 120 GVLRSLLRLGLSVRFEEYYQTKTAGHDQFLSAWYSCPQWLARMWLGSYGKEQTQAFLQAT 179 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW-----WVQD 227 +S + + + A L + P ++ P F + Q Sbjct: 180 LSAPPLGVRINRTHAQ-AETLRENLQPLQQDSSNWGF-ALTQWPEFLQHAVAEGAATRQS 237 Query: 228 ASASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 +A + G + S + D CA GGKT + G V A DV+ RL +L+ RL Sbjct: 238 LAAQKIMDALGVEHWPSPVLDACAGRGGKTYLMSEQGKNVWASDVNVFRLRQLKAEGARL 297 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 Y ++ + +D PCS G + R PD+ W R D Q + Sbjct: 298 GFDIPAFRSQGQGPYPLRQTPRTIFLDVPCSGLGVLSRRPDIKWKRTAADCAGLVKLQEE 357 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 +L + GG +V+ C+L+ +++E+ + + P L S + + Sbjct: 358 ILRAAADLLTSGGCLVYVTCTLNPEENEKQIDRFASLHPEFSRLRQAQSGPAEGLG 413 >gi|320450772|ref|YP_004202868.1| 16S rRNA M [Thermus scotoductus SA-01] gi|320150941|gb|ADW22319.1| 16S rRNA M [Thermus scotoductus SA-01] Length = 399 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 103/441 (23%), Positives = 177/441 (40%), Gaps = 46/441 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ + R ++ +L V R L +RD+ +V LR L Sbjct: 1 MRP-ESPRALAVRILLEVERGGR----AQLLLDRALDRLSWPERDRAYATHLVYGVLRRL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D +L+ L R ++ +LR+ + L AD+A V VE+AKR + Sbjct: 56 RYLDFLLEPHLRKP-ERLPPQVRWILRLGAWEWL-AGKADHARVSPWVEEAKRV--SPRL 111 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 A LVN++LRR+S + R++ +P+W + + F+G+ ++ P + + Sbjct: 112 AGLVNAVLRRLSLREAPECVRLS----LPDWLCQAWQGFFGQVA---FAEGFNEPAPLFV 164 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T +E G + F+ Q+ ++ QL + Sbjct: 165 TAYRSVEGLKPGPIPDSYLWEGGKTD-----------FSALGLQPQNPASLFAAQLLSPV 213 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLC G K L GA++ + D++ RR E +L L Sbjct: 214 PGEKVLDLCGGAGLKAFYLAAKGAEMVSYDLNPRRQEAGEKTARKLGLRVIY--RTQDLR 271 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + VL+DAPC+ TGT R HP++ + +D + A Q KLL + GG+ Sbjct: 272 EPLSEKAKKVLLDAPCTGTGTFRSHPELRYRLAPEDPRRMAELQLKLLETAARATEEGGV 331 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +++ E V + L P V + + ++PEG Sbjct: 332 LVYSVCTLTEEEGEGVARAFLARHPEFVPEPIACPFPALRSGLGVYVAPEG--------- 382 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G+DGF+ + LR++ Sbjct: 383 --------GLDGFYYLRLRKV 395 >gi|257068774|ref|YP_003155029.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810] gi|256559592|gb|ACU85439.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810] Length = 551 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 100/479 (20%), Positives = 167/479 (34%), Gaps = 50/479 (10%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +R V+ L V + +L +S RD + +LR R+ Sbjct: 62 STPSRQVALEGLRLVREEDSYANLVLPRLLRSHR---VSGRDAAFTTELFYGSLRAQGRL 118 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 DA+L + L +L+ +LR+ Q+L + VA +A V A+ + A Sbjct: 119 DAILTACVDRPLEEVDPALRDVLRLGAYQLLDMSVAPHAATSETVALARAEVG-AGGASF 177 Query: 124 VNSILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENF-----YGKERV 165 VN++LRRV + + +A + P W L + +E + Sbjct: 178 VNAVLRRVGEKDLPQWIAEVAPDRDQDPTGHLAVVHSHPRWVVRALTDALAGHGRSREEI 237 Query: 166 LAISDACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + A + + L ++ + A + EG Sbjct: 238 DELLAAQNAAPAVSLVMRPGLTDLDELIDHGASQGHLSIFGASWPAGDPGGMDPVKEGRV 297 Query: 224 WVQDASASIPVQLFGTLNNL-------SVLDLCAAPGGKTA----QLIVSGAKVTALDVS 272 VQD + + + LDLCA PGGKTA I A + A+++ Sbjct: 298 AVQDEGSQLAALALALGADDLVQGDDAHWLDLCAGPGGKTALLGGLTIDHDADLLAVELQ 357 Query: 273 KRRLEKLRC--NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDV 328 + R E + R + D + F VL D PCS G +RR P+ Sbjct: 358 EHRTELVDRAVATLREAGCEIETRTADGTVLGAELPGRFSRVLADVPCSGLGALRRRPEA 417 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W R DI + QR LL + PGG+V + CS ++ +V V++ Sbjct: 418 RWRRSPGDIGQLGGLQRDLLASALDAAAPGGVVAYVTCSPHLAETRLIVADVMKRRTDAE 477 Query: 389 ELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +L ++ + A G +++ P + G D + LR+L P Sbjct: 478 QLDARDAVRAGVLPAAQQDLDLGAGPAVQLWPHV--------HGTDAMYISLLRKLPAP 528 >gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58] gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58] gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis H44/76] gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis CU385] gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis H44/76] Length = 419 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADAQDLSAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L EL+ Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM 3638] gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 450 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 92/454 (20%), Positives = 181/454 (39%), Gaps = 37/454 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + L V K +S L+ + + + + + A V ++ +ID +++ Sbjct: 11 EIVADALMLVEEKELSSKHALEKIFKKVEGKDKEKA-RGIAHAYVFEIEKWRAKIDFIIN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120 VL S + L LLR+ V ++ + + VV + + N Sbjct: 70 SVLRGSKVEDLDPYLANLLRIGVFEMKFKKINPAIATDSIVRVVKEKFDLTRAKFANAIL 129 Query: 121 AK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + N ++ + ++ +A P W+ E + + G + + + + + P Sbjct: 130 REVEKFNVEKALKRLKEKDRIEWLAVRFSHPRWYVEYVIDLLGYDEAVRLLLSNLKPQRY 189 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + + DIE L + + + + I L G+ +G + +QD + Sbjct: 190 YVRINSLKADIEKVKKYLEENGVRVAYTPVDDVLKVLEYEKPITKLEGYKKGYFVIQDLA 249 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + VLDL AAPG KT + + ++ A+D S RL +++ + +L Sbjct: 250 SAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYERLVRMKERMKKL 309 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ D Y K+ FD +++DAPCSS+GT R+ P+V W + + I + QR Sbjct: 310 GVKNVKLVYADGQSYIDKEKFDKIILDAPCSSSGTYRQFPEVKWRFNEEKIKRIISVQRN 369 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L+ +K GG + +S CS+ ++EE V L E+V ++ D Sbjct: 370 MLINAFRNLKEGGEMTYSTCSVRIDENEENVMFGLER---GFEIVDYPFSWG---DKGFL 423 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + R + FF LR+ Sbjct: 424 EIGDKTFRTWTH--------RHDCNSFFIAKLRK 449 >gi|91784970|ref|YP_560176.1| NOL1/NOP2/Sun family protein [Burkholderia xenovorans LB400] gi|91688924|gb|ABE32124.1| NOL1/NOP2/Sun family protein [Burkholderia xenovorans LB400] Length = 419 Score = 197 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 91/443 (20%), Positives = 156/443 (35%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F Sbjct: 72 PARRMA-------LLGLMQ------------------TAGRNALKPFVSEQELSWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + +P+W + L + + + ++ A P +DL + Sbjct: 107 KIDPESLPLRIRLNLPDWIYQALSKRFEPDELAQLAAALNYPAPLDLRTNPIKASRDDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + L+ + G + L F G VQD + + L Sbjct: 167 NALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A DVS+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDVSERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 SKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VV++ L P + + + ID+ M ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVEQFLAGHPDFALVPARDVLAEQRIDLEMGD----YLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|149917223|ref|ZP_01905722.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis pacifica SIR-1] gi|149821830|gb|EDM81224.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis pacifica SIR-1] Length = 453 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 100/436 (22%), Positives = 166/436 (38%), Gaps = 37/436 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ L + +++ +L + F L RD+ L+ +V LR R+DA Sbjct: 12 NPRRLAVRTLREIEQRQGFSNRILSEQLE--RFPDLDPRDRGLITTLVYGVLRHRGRLDA 69 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 LD + K L+ +LRV+ ++L LD A + AKR ++ Sbjct: 70 HLDAAADKP-HKLKGELRTILRVAAYEVLELDRPLPIASAEASKAAKRIDPRGRLKGMIA 128 Query: 126 SILRR--VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 IL + + ++ R +P W ER G E + A + A +DL V Sbjct: 129 KILAKVAKDKADLDARLRPGQRWSLPAWLVERWSAQLGAEGLEARARALTEVPSVDLRVD 188 Query: 184 FDIETWAH---------------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 T +L + P F +G+ +Q Sbjct: 189 LSRSTRDAVREQLVADHPSVRFVELPEAAGDQPQCLRVRGGGDLFHGPLFEDGLIAIQSL 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRL-EKLRCNLD 284 + V++ LD CA G KT Q+ + + A D S RL E R Sbjct: 249 GSQQAVRVLDPQPGERTLDACAGMGTKTIQIAEHMGRRGALVASDASAERLDELERSARA 308 Query: 285 RLHLYA----EDIIEMDA---------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R+ L A ++ D + FDAVL+DAPC+ G + RHP++ WT Sbjct: 309 RIELDADGIALQVVHADLAGPELPAELDAPPDEAGFDAVLLDAPCTGLGNLARHPELRWT 368 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 D+++ A Q LL + ++V+PGG +V++ CSL+ ++ +V L + Sbjct: 369 SQASDVLERAGLQASLLERCAAWVRPGGRLVYAVCSLEPEEGPAIVDAFLATEAGAAFEQ 428 Query: 392 PLNSAYWKSIDMAMAL 407 A+ + Sbjct: 429 TKREAWTPEAQRSDGF 444 >gi|261416620|ref|YP_003250303.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373076|gb|ACX75821.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326268|gb|ADL25469.1| ribosomal RNA small subunit methyltransferase B [Fibrobacter succinogenes subsp. succinogenes S85] Length = 419 Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 106/457 (23%), Positives = 185/457 (40%), Gaps = 70/457 (15%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L R + LS + R ++ + Sbjct: 5 REEAFRVLLLWQRDGSFI-----------KESGLSP----FAMELALGVCRRHLYLEYFV 49 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + +L + + Q+ ++DV DYA ++ +VE AK A+LVN++ Sbjct: 50 KSLTKKLP---SLEARVILEMGLFQMFFMDVPDYAAINDSVELAKSANLGESTARLVNAV 106 Query: 128 LRRVSRE-----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LR R+ + ++R++ + +PEW R + YG +R A++ A + + V Sbjct: 107 LRTARRQGEPALPPQRVRRVSVENSVPEWLVRRWFDVYGGDRAEALAKATLERPTEWIRV 166 Query: 183 KFDIET---WAHKLNAVMLPTGGIRLKELPESIV-----SLPGFAEGVWWVQDASASIPV 234 + A K+ R E+P + +LP F +G + Q+ SA V Sbjct: 167 NLQKTSAPVLAEKIGITGASILYDRFIEIPRDVGVKLLLALPEFVKGQFSFQNPSAFEVV 226 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLYAED 292 +L L V D CAAPGGKTA + + ++ A D S RLEK++ ++RL L Sbjct: 227 KLLDLKPGLKVWDACAAPGGKTALMAEMDSSLEILASDSSASRLEKMQDLMNRLGLTNIK 286 Query: 293 IIEMD----------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 +D + FD +L+D PCS+ G I R P+ ++ + I + A Sbjct: 287 TEVIDLAPASATSPQQSTLSSEAKFDRILLDVPCSNMGVIARRPESVYRMTPESINEVAE 346 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q K+L + + PGG +V++ CS D ++ V+ + ++ P V++ Sbjct: 347 LQFKILENASTALAPGGRLVYATCSPDPTETTRVIARFVKVHPEFVKVGEP--------- 397 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + P + + DGFFA AL Sbjct: 398 ------------VLPGLKDSRL------DGFFAQALE 416 >gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967 methyltransferase) [Neisseria meningitidis 8013] Length = 419 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L + +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVL--VHIRAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis OX99.30304] gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M0579] gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240149] gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis NZ-05/33] Length = 419 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASTA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADAQDLSAWYDGKPFDAVLADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L EL+ Sbjct: 359 WQVLKSGGRMLIATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|257455153|ref|ZP_05620391.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter aerosaccus SK60] gi|257447486|gb|EEV22491.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter aerosaccus SK60] Length = 450 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 109/467 (23%), Positives = 196/467 (41%), Gaps = 53/467 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +N R L + + D +S++D+ ++ TLR Sbjct: 6 SQLNTRAKVVATLERIQQGES------LSSLLDPLLNQVSEKDKGFAHELLLGTLRQWWA 59 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + + + ++ + + L + + Q+LY+D DYA + VE K+ + A Sbjct: 60 LARIGESLIEHEVT--DKGVWAALNIGLYQLLYMDTPDYAAIGETVEAVKQLDKGYG-AG 116 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 L+N+ILR+V + + ++I +P W ++L+ +G+ + A P I L V Sbjct: 117 LINAILRKVQKNPAKFAKKIEKNHSLPNWLAKQLKQDWGEYYAE-LGQALRQPAPIFLRV 175 Query: 183 ---KFDIETWAHKLNAVMLPTGGIRLKELPE---------SIVSLPGFAEGVWWVQDASA 230 +E +A L + + + I LP FAEG VQD A Sbjct: 176 NRKFCSVEDYADILTQQGIGFALVSIGFEKVQTIQLTDAIRITDLPKFAEGWVSVQDRHA 235 Query: 231 S---IPVQLFGTLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALDVSKRR 275 + +L+VLD C APGGK A + A V ALD ++R Sbjct: 236 QLSAHILASLALDKSLTVLDACTAPGGKLAHLLELDESKTFHVKHQNIAHVIALDNDEKR 295 Query: 276 LEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 L+++ NL+RL L ++ DA + FD +++DAPC++TG IRRHPD+ R Sbjct: 296 LQRVSQNLERLQLNQENVQLVCDDATTFQADTQFDVIVLDAPCTATGVIRRHPDIALLRT 355 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 D+ ++A Q ++L + G +++ CS+ K ++E +Q L + ++V Sbjct: 356 EQDVGQTAALQARILANCWHNLATNGYLLYITCSMLKAENENQLQAFLATHK-AAQIVDF 414 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ + + P + DGF+ L++ Sbjct: 415 S------LNLPNQIKQNIGYQCLP-------LHQNDGDGFYYALLQK 448 >gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis N1568] Length = 419 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 200/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L + +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGHNLQDVL--VHIRAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A +P E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIPARALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 431 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 107/452 (23%), Positives = 186/452 (41%), Gaps = 48/452 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 SG R + +L V ++ L L+ D+ ++ +V TLR Sbjct: 11 TSGGAVRKAAITVLRGVD-SGQTVDAAL-------LPVSLTGTDRATLQWLVLGTLREFL 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A+ +L + L LL +++ ++ + +AVV+ VE + K+ Sbjct: 63 SVQALSAKLLRKPWREEDADLGFLLSLALFELRHGQRPAFAVVNDWVEMTEAVKKP-WAR 121 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 L+N++LRR RE+ L + P W RL Y ++ AI+ A S + L Sbjct: 122 GLMNAVLRRYLREREVLDTALVDRDLGHPAWLAARLRAAYPQDW-PAIAAANNSAPPLWL 180 Query: 181 TVKFDIET--------WAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASAS 231 V A + L + +LPG+ G VQD +A Sbjct: 181 RVNTQRVDPGAYRRLLAEQGREAEGVTWSAAALCLPASVPVATLPGWDAGWVAVQDGAAQ 240 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLH--L 288 + + +LD CAAPGGKTA L G ++ ALD S RL ++R L+R + Sbjct: 241 LAAHILAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEV 300 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + + + +DA+L+DAPC+ TG IRRHPD+ R +D+ ++ Q +LL Sbjct: 301 HLQAADAAETATWWNGETYDAILLDAPCTGTGVIRRHPDIRLRRQPEDVAEAVAQQARLL 360 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG ++++ CS+ +++EE + ++ + Sbjct: 361 EGLWPCLRPGGRLLYATCSVLPEENEEQIAAFVQRHSDARRMA----------------- 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + + MDGF+ L + Sbjct: 404 -------HP-LTGQRLPGQEDMDGFYYALLEK 427 >gi|134296682|ref|YP_001120417.1| Fmu (Sun) domain-containing protein [Burkholderia vietnamiensis G4] gi|134139839|gb|ABO55582.1| Fmu (Sun) domain protein [Burkholderia vietnamiensis G4] Length = 420 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 98/446 (21%), Positives = 158/446 (35%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q L + F + Sbjct: 72 PARRLT-------LLGLMQTL------------------GRNALKPFVSDNEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + + + +P+W + L + + + ++ A P +DL + Sbjct: 107 KIDPASLPVRVRTNLPDWIYQALSARFDADELAQLAAALNYPAPLDLRANVQKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DALRANGIEAGATPFAPNGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENEAIVEQFLADHP-DFVLVPAQKVL---ADQRIELDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|84496642|ref|ZP_00995496.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649] gi|84383410|gb|EAP99291.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649] Length = 500 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 100/477 (20%), Positives = 165/477 (34%), Gaps = 53/477 (11%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + LL V L RD + TLR DA Sbjct: 37 PARLAAYTLLRAVDD-GAYANLEFPAIIRRHK---LDSRDAAFATELAFGTLRMQGFYDA 92 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ S + +LR+ Q+L + V +A D V A+ + VN Sbjct: 93 VIERAADRSTSTIDSGVLDVLRLGAHQLLGMRVPTHAAADQTVGLARTVSG-AGASGFVN 151 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLE----------NFYGKER 164 +++RR+S E A PEW L Sbjct: 152 AVMRRISERTREEWVTQVVPEGGSTAALAVEYSHPEWVVSALRGALLTGGRATAETVDGE 211 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGV 222 + + D+ P + L + + T ++A T ++ + Sbjct: 212 LRELLDSDNIPAKVSLVARPGLATVDELVDAGATASATSPFGAVLEHGEPGAIAAIRDRR 271 Query: 223 WWVQDASASIPVQLFGTLN-----NLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSK 273 VQD + + LDLCA PGGK+ + + A + A+++S Sbjct: 272 AAVQDEGSQLLSAALAMAPVDSDVPHRWLDLCAGPGGKSGVLGALAVEADADLVAVEISD 331 Query: 274 RRLEKLRCNLD------RLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325 R + +R L+ R ++ D + + + VLVDAPC+ G +RR Sbjct: 332 HRADLVRSTLEPVIALARAAGRRIEVRTTDGREVGEAEPAAYGRVLVDAPCTGLGALRRR 391 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 P+ W R D+V+ QR LL + V PGG+V ++ CS ++ VV+ VL+ Sbjct: 392 PEARWRRQPSDLVQLGPLQRDLLRSALDAVAPGGLVGYATCSPHPAETTFVVRDVLKKRD 451 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + S ++ L +++ P + G D F LR+ Sbjct: 452 DIDVVDAREFFRDASGEVLHDLGDGPSVQLWPHV--------HGTDAMFFTLLRKKA 500 >gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 434 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 107/452 (23%), Positives = 186/452 (41%), Gaps = 48/452 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 SG R + +L V ++ L L+ D+ ++ +V TLR Sbjct: 14 TSGGAVRKAAITVLRGVD-SGQTVDAAL-------LPVSLTGTDRATLQWLVLGTLREFL 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + A+ +L + L LL +++ ++ + +AVV+ VE + K+ Sbjct: 66 SVQALSAKLLRKPWREEDADLGFLLSLALFELRHGQRPAFAVVNDWVEMTEAVKKP-WAR 124 Query: 122 KLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 L+N++LRR RE+ L + P W RL Y ++ AI+ A S + L Sbjct: 125 GLMNAVLRRYLREREVLDTALVDRDLGHPAWLAARLRAAYPQDW-PAIAAANNSAPPLWL 183 Query: 181 TVKFDIET--------WAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASAS 231 V A + L + +LPG+ G VQD +A Sbjct: 184 RVNTQRVDPGAYRRLLAEQGREAEGVTWSAAALCLPASVPVATLPGWDAGWVAVQDGAAQ 243 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG-AKVTALDVSKRRLEKLRCNLDRLH--L 288 + + +LD CAAPGGKTA L G ++ ALD S RL ++R L+R + Sbjct: 244 LAAHILAPREGERILDACAAPGGKTAHLWALGATRLDALDRSAERLNRVRETLERQGGEV 303 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + + + +DA+L+DAPC+ TG IRRHPD+ R +D+ ++ Q +LL Sbjct: 304 HLQAADAAETATWWNGETYDAILLDAPCTGTGVIRRHPDIRLRRQPEDVAEAVAQQARLL 363 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG ++++ CS+ +++EE + ++ + Sbjct: 364 EGLWPCLRPGGRLLYATCSVLPEENEEQIAAFVQRHSDARRMA----------------- 406 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + + MDGF+ L + Sbjct: 407 -------HP-LTGQRLPGQEDMDGFYYALLEK 430 >gi|83312882|ref|YP_423146.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum AMB-1] gi|82947723|dbj|BAE52587.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum AMB-1] Length = 428 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 91/445 (20%), Positives = 172/445 (38%), Gaps = 38/445 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL-- 71 +LS + + + + + + +D+ V +V LR RID L+ + Sbjct: 1 MLSEIEKSAKPADSVASFYFKQRRY--IGAKDRRAVAEVVWRVLRRRARIDWWLEHLDHP 58 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 K + RV +A +++ + + A + + + + + Sbjct: 59 ERPNAEGKGGSRA--RV-LADMIFEGIKPEPDLFRGPHSAYPPEPPERRVLDMLAGQKSL 115 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 + R P+W RL + + + A +DL V + Sbjct: 116 FHRDMPPHVRGE----YPQWLTPRL-AALFGDNLDSEMGAMRDEAPLDLRVNTLKATRDE 170 Query: 189 WAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L + L +V + + G+ VQD + + L Sbjct: 171 AIRALAKEGIKAEPTALSPIGLRLGARVPLVQVQAWRNGLIEVQDEGSQLVALLTDPKPG 230 Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 +V+D CA GGKT A + + ++ A DV++ R+++ + L R ++ E Sbjct: 231 QAVVDYCAGAGGKTLALAAAMQNKGRLVACDVAEWRVDRAQDRLRRAGVHNVTRRVIEGE 290 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D + FD VLVDAPC+ TGT RR+PD W D+++ Q +L Sbjct: 291 SDKWIKRSAGSFDRVLVDAPCTGTGTWRRNPDAKWQFSETDLLELVARQGAILDSAARLT 350 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KPGG ++++ CS+ ++++E+ ++ L + P VP+ + + + W+R+ Sbjct: 351 KPGGRLIYATCSIMREENEDRIEAFLAAHP-DYRPVPVPELWAELAGTPCPVGG-PWLRL 408 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 +P + G DGFFA L + Sbjct: 409 SPQ--------AHGTDGFFAAVLEK 425 >gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710] Length = 419 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 197/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa ATCC 25996] gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa ATCC 25996] Length = 419 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RAAHPELTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + + F N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ E L+N Y K I+ A S + L V Sbjct: 120 ILRRFLRERQKLEASCKKDDVAKHNLPLWWVEYLKNHYPKHW-HNITTALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + + + LPGFAEG+ VQD A Sbjct: 179 NRRHSNAESYLEKLAAEGIAAKALDEYAVTLDEAVPVSRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + VTALD+ + RL++++ N+DRL + Sbjct: 239 LLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNIDRLGFQTTALT 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDA+L D PC+++G RR+PDV W R D K+A Q LL Sbjct: 299 CADAQDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + G ++ + CS+ ++++ +QK L EL+ Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDVQLQKFLNRH-ADAELIESRV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418 >gi|268315920|ref|YP_003289639.1| Fmu (Sun) domain-containing protein [Rhodothermus marinus DSM 4252] gi|262333454|gb|ACY47251.1| Fmu (Sun) domain protein [Rhodothermus marinus DSM 4252] Length = 434 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 97/449 (21%), Positives = 157/449 (34%), Gaps = 50/449 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +L ++R + +L + + +RD+ V V LR R Sbjct: 16 EAVVTVLREILRSPLPADTVLQQFFRKHR--KMGKRDRAFVAETVYGMLRHYRR------ 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + LL + V LD+ A+E A R + Sbjct: 68 LAHAARRRADDLRFLTLLYLEVFGFGDAILDLPVRPAERGALEAAARRFREPDLPDDPAA 127 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 L + +P+W +E V A A +P + + V Sbjct: 128 ALG--------------ILYSLPDWLVAAWLEVLPRETVEARCAALKAPAPLTVRVNTLK 173 Query: 185 -DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 D T +L P+ + E I F EG++ VQD + + L Sbjct: 174 ADRGTVQQRLLEEGFPSRPTPYSPVGLILEEKAFIFRTRAFQEGLFEVQDEGSQLISLLT 233 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 V+D CA GGKT L + ++ A D+ + RL +LR R ++ + Sbjct: 234 EARPGQVVVDGCAGGGGKTLHLAALMEGKGRLYAFDIHEARLRELRPRTRRADVHNVRLH 293 Query: 295 EMDAFD----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DAVLVDAPCS TG +RR+PD W + + QR++L Sbjct: 294 VLPHNRASIVRRLYGKADAVLVDAPCSGTGVLRRNPDAAWKITPERVAALVEQQRQILEA 353 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 V+PGG +V++ CSL ++E+ + L + P + + I Sbjct: 354 YAPLVRPGGRLVYATCSLLPAENEQQIHTFLNAHPEFTLIPAAEVLARQGIAFPHQT--- 410 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 D +++ + G DGFFA L Sbjct: 411 -------DAFLRVEPATHGTDGFFAAVLV 432 >gi|56475772|ref|YP_157361.1| sun homolog protein [Aromatoleum aromaticum EbN1] gi|56311815|emb|CAI06460.1| sun homolog protein [Aromatoleum aromaticum EbN1] Length = 427 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 100/461 (21%), Positives = 167/461 (36%), Gaps = 60/461 (13%) Query: 1 MKSG--MNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M +R + ++ +L V+ +L + ++ + RD+ + V Sbjct: 1 MSKHDEAASRSLLIHAARVLGMVLTFEHPADVVLSRYFRENR--EIGHRDRGFIAEAVYG 58 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R L + ++ + LL + Sbjct: 59 IVRRLRWLRRLVGE---------DVRPRTLLL--AWLARGEGWP--------------MR 93 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 A + + A + +P+W ERL +G+ VL ++ + P Sbjct: 94 HFEGLASATERDWISGIKARELDEGSFAERADLPDWLAERLLATHGEAEVLELAHSLNRP 153 Query: 176 LYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQ 226 +DL V D KL + ++ P F EG + VQ Sbjct: 154 APLDLRVNVLKADRGEVLEKLKFAGIEAKPCPFSPHGIRLGAKPALQKHPLFLEGAFEVQ 213 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNL 283 D + + L V+D CA GGKT Q ++ S ++ A DVS++RL KL+ + Sbjct: 214 DEGSQLLGFLVQPKRGELVVDFCAGAGGKTLQLGAMMRSTGRLYAFDVSEKRLAKLKPRV 273 Query: 284 DRLHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 R L E DA D V VDAPCS GT+RR+PD+ W + + + + Sbjct: 274 ARAGLSNVHPVLIAHERDAKVKRLAGKADRVFVDAPCSGLGTLRRNPDLKWRQTPESVAE 333 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L VKP G +V++ CSL ++++ VV L + P E+ + Sbjct: 334 MVAKQGAILESAARLVKPAGRLVYATCSLLVEENDAVVDAFLAAHPEFREIDATEVLKKQ 393 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 I + +R++P DGFFA L R Sbjct: 394 GIALDTGAR----LRLSP--------RKHDTDGFFAAVLER 422 >gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B [Anaerococcus prevotii ACS-065-V-Col13] Length = 426 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 95/455 (20%), Positives = 193/455 (42%), Gaps = 55/455 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + LS ++ K ++ D A L + ++ L +D ++D Sbjct: 5 ELIFNSLSNIIYKDKKSNDEIN-YLSDKASNL------SYITKVIYGVLENKIYLDYMID 57 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + L + ++ +L + + I +L+ DYA VD V+ K+ +N+ A VN+IL Sbjct: 58 KLSKVKLRKIHKNVLLILEIGIYNIHFLETKDYATVDKLVDLTKK--KNKRSAGFVNAIL 115 Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 R R + E+ + + +P + + + YG + + + Sbjct: 116 RNFIRNEKEISKIKISDDLKSLSVRYSMPYDITKYIFDNYGMDYTKEFLRYANKESKLSI 175 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASAS 231 V ++++ L ++ + + P +VS F G++ +Q ++ Sbjct: 176 RVNTTKINVKSLKKDLESIGYTVKDSNISKNALIVDNPNGLVSTDLFKNGLFTIQQEASM 235 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 V++ +N ++LD+CAAPG KT + K+ A D+S +L+ + N++RL L Sbjct: 236 KTVEVLNPRHNSNILDICAAPGTKTTYIAEYTENTGKILANDISFNKLDLIMENINRLGL 295 Query: 289 YAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 ++ DA Y + FD +LVDAPCS G + R P++ + R +DI K A QR+ Sbjct: 296 RNIELTNFDARVYKDEYKEKFDYILVDAPCSGLGVMARKPEIRYNRSLEDIKKLAKLQRE 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +++ I ++K GG++++S C++ ++ E + + +E++P++ Sbjct: 356 IIINAIKYLKVGGVLIYSTCTIGNIENRENFDYI--KNMETMEVIPIDGK---------- 403 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF ++ Sbjct: 404 ------------DYIEFVSFKENTDGFFISKFKKK 426 >gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica ST-640] gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06] Length = 419 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHI--RAAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|223984315|ref|ZP_03634458.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM 12042] gi|223963715|gb|EEF68084.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM 12042] Length = 412 Score = 196 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 103/450 (22%), Positives = 182/450 (40%), Gaps = 59/450 (13%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + L+ ++ + L + LS+ ++ V A++ LR + Sbjct: 4 TRKRAWQGLNAILNEGQYANLWLRQH-----GQTLSEEEKRWVTAVIYGVLRHREPLRWQ 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ + S+ LL +SV Q+ YLD A+YA+V+ AVE R K+ LVN Sbjct: 59 WRDLVRNVPE---PSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELCPRSKK-----GLVN 110 Query: 126 SILRRVSREKIELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++LR++ R + L + A ++ P+W + + YG+E++ I+ A + + Sbjct: 111 AVLRQLLRRGPKPLPKPESIADLALVTSHPQWLLQLWKAHYGEEKMRRIALADLEEAAVS 170 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + E A + + + G + VS P EG +QD S+ + Sbjct: 171 VRINPLKLSREALAQRPDWALESNGWTI--RTAGNPVSDPWLKEGKIVIQDRSSQQVALM 228 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 N +V D C+APG KT Q ++ + + A D+ RL + R Sbjct: 229 LDPKPNDTVFDACSAPGTKTTQLAAMMNNEGSILACDLHAHRLALVEEAAQRCGATIIQT 288 Query: 294 IEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 +DA + FD VL+D PCS G +R P++L D + + Q +L Sbjct: 289 RTLDAAQADQQLAGRQFDRVLLDVPCSGLGVLRHKPEILLRLTPDSLDEIVALQAAILSH 348 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 KPGG +V+S C+L+++++++ V L P EL+ Sbjct: 349 CAPLCKPGGTLVYSTCTLNRKENDKQVAAFLLQHP-EFELMAE----------------- 390 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + I DGF+ + R Sbjct: 391 ----------QTIFPDEGAQDGFYIAKMTR 410 >gi|218767200|ref|YP_002341712.1| SUN homolog [Neisseria meningitidis Z2491] gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491] gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967 methyltransferase) [Neisseria meningitidis WUE 2594] Length = 419 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 197/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FD +L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|285019616|ref|YP_003377327.1| tRNA and rRNA cytosine-c5-methylase [Xanthomonas albilineans GPE PC73] gi|283474834|emb|CBA17333.1| putative trna and rrna cytosine-c5-methylase protein [Xanthomonas albilineans] Length = 437 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 129/438 (29%), Positives = 189/438 (43%), Gaps = 41/438 (9%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 + SL L RD+ LV AI LR P +A L L LP++ Sbjct: 26 DRGRSLKAELAAALPGLP----DARDRALVEAICFAVLRRRPAYEAALRLWLQKQLPQRD 81 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 L+ LL AQ+ L +A +A + VE + + R A LVN++LRR R+ + + Sbjct: 82 AELRALLLAGFAQLDVLGLAPHAALSATVEATRALERPRQ-AGLVNALLRRALRDGLPEV 140 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199 AG P W ++ + + E+ AI A P + L V T A L A+ Sbjct: 141 PADAGW---PLWLRDAVCADWP-EQAEAIFAASQQPAPLWLRVNRQRGTRATYLQALADA 196 Query: 200 TGGIR---------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + +P ++ +LPGFAEG VQDASA + VLD CA Sbjct: 197 GIAAQAASALADAVCLHVPMAVSALPGFAEGWVSVQDASAQQVADVLAPAPGARVLDACA 256 Query: 251 APGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH----LYAEDIIEMDAFDYCPK 304 APGGK+A +TALDV RRL+++R +R+ + + Sbjct: 257 APGGKSAHLLERDPTLCLTALDVDARRLQRVRETFERIGSGTQARLQVADAAQPQTWWDG 316 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FDAVL+DAPCS+TG +RR PDVL R +D++ Q +LL G ++PGG++V++ Sbjct: 317 VPFDAVLLDAPCSATGIVRRQPDVLLHRRGEDLIALQALQARLLDAGWQVLRPGGVLVYA 376 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL + ++ +Q +L P + S G + P Sbjct: 377 TCSLLQDENARQLQALLARHADAALEDPGAACGHPSG---------GGRQRLPGEQHA-- 425 Query: 425 GVSSGMDGFFAVALRRLI 442 DGFF LR+ Sbjct: 426 ------DGFFYARLRKTA 437 >gi|300692914|ref|YP_003753909.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Ralstonia solanacearum PSI07] gi|299079974|emb|CBJ52651.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Ralstonia solanacearum PSI07] Length = 441 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 101/438 (23%), Positives = 166/438 (37%), Gaps = 36/438 (8%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ ++L +D + + + R+L D ++ ++ Sbjct: 22 LRQGMTLPQAIDAAC-----AGQPGATRGAAQDLAYRATRWLGSADWLIRTLIPRPPAEG 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + VVD AV A D + H ++N +LRR RE+ Sbjct: 77 AA---NLLRVALAQLLDTPPPYAPFTVVDQAVRAASADPKLAHAKGMINGVLRRFLREQG 133 Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 +L+ + P W+ + + Y + ++ P + + V + Sbjct: 134 DLVAAMQADPVAAINYPAWWIGAVRDAYPEAWQAILAAGNRRPPMVLRVNPRRVPVDAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A G + LPGF EG VQDA A + L VL Sbjct: 194 ARLAEAGIEAERIGGQAVRLARAMPVGDLPGFVEGDVSVQDAGAQLAAPLLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT + G +V AL+ R E++ NL RL A + Sbjct: 254 DACAAPGGKTGHLLELADGLEVVALESDAERAERIGENLARLGQTATVCVGDAAKPDAWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +L D PCS+ G +RRHPD+ W R D+ A QR ++ + +KPGG +V Sbjct: 314 DGRSFDRILADVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E + + L + +P Sbjct: 374 YVTCSIFPTEGEAQARWFESRLQDAIRLDGPGQLLPAMSEATGGFAP------------G 421 Query: 423 IDGVSSGMDGFFAVALRR 440 + + DGF+ ++ Sbjct: 422 VSSLPLDHDGFYYAVFQK 439 >gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6] Length = 440 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 184/452 (40%), Gaps = 36/452 (7%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +L + + IS L F + + + A V TL+ ID ++D Sbjct: 6 EIAVEILERIDEEIISAKEALKAGLAGKDFDY---KVRGSIHAYVMETLKRRNTIDFLID 62 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV--- 124 L ++ K L+ LLRV+V ++ Y V D AV AKR R A + Sbjct: 63 RSLDGKTVYELKPFLRNLLRVAVYEMFYKGVHPALATDSAVRIAKRRIGGRAAALVNAVM 122 Query: 125 ---NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL--AISDACISPLYID 179 I ++ +QR+A PEW+ E G+E+ + I++ + Sbjct: 123 RRAEKIDLNSETSRLPEVQRLAYRYFHPEWYVEYAIKLLGREQAIELMIANMQNTTYVRV 182 Query: 180 LTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 +K IE+ L ++ +L A+G + VQD ++++ Sbjct: 183 NELKASIESVRKYLERYCVIEETCLPEVFKVVAWDRHPSTLEWHADGKYVVQDLASTLVA 242 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 VLDL AAPG KT+ + + + K+ A+D S+ R+ +++ + +L + Sbjct: 243 HAMKPEPGERVLDLAAAPGLKTSHIAMLMENRGKIMAVDNSEERVRRMKAKMKKLGVEIV 302 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + D + D VL+D PCS+TG R +P V W D + QR++L Sbjct: 303 ECRVADGVKFRW--KADRVLLDPPCSTTGAFRNYPCVKWRYDEYKYRATVKLQRRMLENA 360 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-- 409 V GG+VV+S CS+ ++EE V SP V+ V ++ + P Sbjct: 361 YRNVGEGGVVVYSTCSITFDENEENVMA----SPFKVDDVKIDGFSSGISEFEGKRFPEW 416 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +R P + + GFF L R+ Sbjct: 417 EKVLRTWPHLHDCC--------GFFISRLLRV 440 >gi|260903811|ref|ZP_05912133.1| Fmu (Sun) domain protein [Brevibacterium linens BL2] Length = 492 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 162/460 (35%), Gaps = 44/460 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ +L V K LL + + + +D + LR DA+ Sbjct: 49 PRRIAWEVLVDVETKDSYANLLLPAKLARTH---MEPQDAAFTTELTYGALRQQEFYDAI 105 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + +R+ QIL + V D+A + V K + A VN+ Sbjct: 106 IARAANRPIDSIDAEPLAGMRLGAHQILSMRVPDHAALSETVAVIKTN--APKTAGFVNA 163 Query: 127 ILRRVSREKIELLQR-----------IAGISIIPEWFKERLENFYGKE-----RVLAISD 170 +LRR+S R A PEW + + A+ + Sbjct: 164 VLRRISEVDRAEWLRRVTDGATAVGEQAIEYSHPEWIVRAMTQALKGHGRQASELQALLE 223 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 A + + ++ + + L I + ++ A G VQD + Sbjct: 224 ADNAAAKVSVSALPGLVDRSE-LPGAPTEFSPIGVTLETAVPKNVDAVATGRARVQDEGS 282 Query: 231 SIPVQLFGT--LNNLSVLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ + DLCA PGGK A G + A D S+ R+E +R + Sbjct: 283 ALVALALAQVEAPAGNWADLCAGPGGKAAVLAAIAKQQGGALDAFDSSEHRVELVRSSTQ 342 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L DA + VLVD PCS G +RR P+ + R +DI A Q Sbjct: 343 --ALDNVTTRVQDAR--DATGPYAKVLVDVPCSGLGALRRRPEARYRRRPEDINALAGLQ 398 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL + PGG+V +S CS ++ VV VLR + + + P A D Sbjct: 399 RELLRAALDACAPGGVVAYSTCSPHYAETVLVVDDVLRKTDVEILDAPAVLAEVTGTDAE 458 Query: 405 MALS----PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S + ++ P + DG F +R+ Sbjct: 459 GFASVTRGAGRYAQLWPHV--------HNTDGMFLALMRK 490 >gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] Length = 472 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 92/419 (21%), Positives = 177/419 (42%), Gaps = 39/419 (9%) Query: 45 DQILVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAV 103 D+ L+ +I T++ + +D V + + L+ LR++V +L+ D Sbjct: 68 DR-LLTSIFYDTMKRMGLLDRVAAELANVPTVLILDPWLRAALRLAVDIVLFHR-PDKNT 125 Query: 104 VDLAVEQ------AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLE 157 + AK F L + + + + ++P W R+ Sbjct: 126 LHRLRWIVADFISAKTHPYVGMFYWQTFDKLLEYRPKPKTVEEALEWKYLLPAWLIRRMR 185 Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 + G+E + +A I + V T + + + IV G Sbjct: 186 SLLGEEESEKLFEALNKRPLISIRVNTLKTTVEEVVEELKREGKNPIVSTRVPVIVKFEG 245 Query: 218 ---------FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265 + EG + +Q+ +++ + ++V+DL AAPGGKT+ + + + + Sbjct: 246 PYDFDRSRLYREGKFVIQEEASAAASIILDPKPGMTVVDLAAAPGGKTSHIAELMKNHGR 305 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTI 322 + A D+ + R++++R L R+ + I E DA + +++ D VL+DAPC+STGTI Sbjct: 306 IYAFDIDRVRIKRMRMILRRMGITIVRIFEKDAREAPRILGEEIADRVLLDAPCTSTGTI 365 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 ++P++ W + + + QR++L VKPGG ++++ CSL +++E+ ++ L+ Sbjct: 366 AKNPELRWRVREEGLEEIVKLQREMLEAAAKLVKPGGRLLYTTCSLLPEENEDNIKWFLK 425 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +LVPLN Y S + G +R P GFF L + Sbjct: 426 RH-SEFKLVPLNGPYDPSPLL------HGTMRAWPH--------RHDTIGFFYALLEKK 469 >gi|154244891|ref|YP_001415849.1| Fmu (Sun) domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158976|gb|ABS66192.1| Fmu (Sun) domain protein [Xanthobacter autotrophicus Py2] Length = 478 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 107/472 (22%), Positives = 163/472 (34%), Gaps = 53/472 (11%) Query: 6 NARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ARL + L+ V ++ + A R + RD+ + ++ LR RI Sbjct: 16 AARLQATLELMHEVDSVARPADAVVSAWFR--ARRQIGDRDRGQIYDLLYALLRHHARIV 73 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQ------------------ILYLDVADYAVVDL 106 L +PR + L A + D Sbjct: 74 WWLAKHGRPDVPRNRLLAWLALDGGTALGGKTSGNKTSGNKTSGNKTSGNKTSGSKTPDQ 133 Query: 107 AVEQ-AKRDKENRHFAKLVNSILRRVSREKIELL-QRIAGISIIPEWFKERLENFYGKER 164 + ++L ++ I+ P W E L + + Sbjct: 134 IHGLFSGGKFAPAVLTDHERALLLKLQGCTIDHPAMPDEVRFECPSWAVEPLRRRFD-DT 192 Query: 165 VLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESI------VSL 215 A ++P +DL V E L + L RL + SL Sbjct: 193 FEREMAALLTPPPLDLRVNPVKSTREAMLRALRDLGLKAEPSRLAPFGIRVKERPSLASL 252 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVS 272 P G +QD + + L V+D CA GGK A + + V A DVS Sbjct: 253 PMLKSGEVEIQDEGSQLVAMLVDARPGERVVDFCAGAGGKTLAIAAQMANKGHVIACDVS 312 Query: 273 KRRLEKLRCNLDRLHLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 RL++ R L+ + E D + K FD VLVDAPCS TGT RR+PD Sbjct: 313 DGRLKRAAERFRRAGLHNIETRPLASETDRWVKRHKGGFDRVLVDAPCSGTGTWRRNPDA 372 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W + + Q ++L VKPGG +V++ CS+ +++E V L + P Sbjct: 373 RWRQQEAGLDHLLPLQARILASAARLVKPGGRLVYATCSMLPEENEAQVAAFLAAYP-AF 431 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++P+ A + A PD L + DGFFA L+R Sbjct: 432 HVMPVREAAPQLTGSA-----------HPDHL-SLTPARHETDGFFAAVLQR 471 >gi|332283972|ref|YP_004415883.1| hypothetical protein PT7_0719 [Pusillimonas sp. T7-7] gi|330427925|gb|AEC19259.1| hypothetical protein PT7_0719 [Pusillimonas sp. T7-7] Length = 474 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 105/461 (22%), Positives = 172/461 (37%), Gaps = 64/461 (13%) Query: 6 NAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 AR +L +++ L + L RD+ V V LR L R Sbjct: 36 AARIEQVRSVLGEILQWEYPADAALSHWFRVHP--KLGARDRGEVAEAVFDVLRHLRRY- 92 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 S + ++L + +A V D +V++ + + ++ Sbjct: 93 ---RQFSESG---TGPAARRLAILGLA-----SVFDKSVLNTGLSEIEQQWL-------- 133 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + A +P+W ERL + + + A P +D+ V Sbjct: 134 -----AHVQGISIESLSRAVRDSLPDWLDERLASL---DNADDLVRALNQPAPLDIRVNP 185 Query: 185 ---DIETWAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASI 232 D ++ A + + P F +G VQD + I Sbjct: 186 LKADRADMLKQMRAGAGLRYDPEPTPYSPWGIRLQGRPPVNRWPMFEKGEIEVQDEGSQI 245 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 V L G ++D CA GGKT L+ S ++ A DVS RL + + R L Sbjct: 246 LVALVGPKRGEMIIDYCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLS 305 Query: 290 AEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + E D + VL+DAPCS GT+RR+PD+ W + + + Q Sbjct: 306 NIVPVVINAENDQRVKRLRGKAQRVLIDAPCSGLGTLRRNPDLKWRQHPESLQALCDTQA 365 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L Q V PGG +V++ CS+ +++EE +++ L +P + L A D Sbjct: 366 SILRQASRCVAPGGRLVYATCSILPEENEEQIERFLAENPDFIVLDACKIA----ADRCE 421 Query: 406 ALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVAL-RRLIQP 444 L+ EG ++R+ PD+ DGFFA L R+ P Sbjct: 422 NLTLEGPFLRLRPDI--------HQTDGFFAAVLERKKETP 454 >gi|313680062|ref|YP_004057801.1| nusb/rsmb/tim44 [Oceanithermus profundus DSM 14977] gi|313152777|gb|ADR36628.1| NusB/RsmB/TIM44 [Oceanithermus profundus DSM 14977] Length = 410 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 106/441 (24%), Positives = 174/441 (39%), Gaps = 34/441 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + R ++ +L V + LDL + L + L +V TLR L Sbjct: 1 MHALDDPRALALGVLVKV-GRGRFAAPTLDLALSRT---ELDPQAAGLATDLVYGTLRRL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ID L+ +L R +++ LR + L+ +A V+ VE R + Sbjct: 57 RWIDWSLEPLLEHP-GRLPEAVRWALRAGGYEKLFTPRPAHASVNAWVEVVGR--RHPRL 113 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR+ A +P++ E +G + P + L Sbjct: 114 RGLVNAVLRRLETRPAPE----AVRLGLPDFLYEEWRTRFGDPEW---MEELNEPAPLWL 166 Query: 181 TVKFDIET-WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 T+ E A + ++ S+ + F +G+ Q+ ++ + QL Sbjct: 167 TLFPGGEAALAEQGVPFEPGPVPGNVRVQGFSVRRIVAFRKGLAQPQNPASLLAAQLLEA 226 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLDL K A L GA+VT++D RR E R NL RL L Sbjct: 227 RAGERVLDLAGGSALKAAWLAARGARVTSVDADARRQEAGRRNLARLGLQ--VTFRTHDL 284 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 VL+DAPC TGT+R HP++ + + + + + A Q +LL +PGG Sbjct: 285 TRPLDLTAPKVLLDAPCLGTGTLRGHPELRFRLEPEALARMARLQAQLLETAARATEPGG 344 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++V++ CSL + + E V + L P L + + + + PE Sbjct: 345 LLVYAVCSLTEAEGEGQVARFLAEHPEFEPLEIDSPVPLLARGHGVYVRPE--------- 395 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 +G+DGF+ LRR Sbjct: 396 --------NGLDGFYYARLRR 408 >gi|325266376|ref|ZP_08133054.1| RsmB/NOP family methyltransferase [Kingella denitrificans ATCC 33394] gi|324982169|gb|EGC17803.1| RsmB/NOP family methyltransferase [Kingella denitrificans ATCC 33394] Length = 431 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 176/449 (39%), Gaps = 61/449 (13%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + L ++D+ + LR +I AVL Sbjct: 22 AQVLADMLTFKQPADAVLSDYFRQHR--KLGRQDRHEIAETAFAALRHYQKIAAVL---- 75 Query: 72 ISSLPRKKYSLQQLLRVS----VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + + L + ++Q+ +L + Sbjct: 76 RRPYAQPEKAALAALVLGRGTNLSQLAHL-----------------------ADEETMEF 112 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 + R+ K E + + +PEW ERL+ + E+VLA + + P +D V Sbjct: 113 MSRLKARKTEWQSSLHTAAELPEWLVERLQAHWTDEQVLAFGRSVMQPAPLDTRVNTLKG 172 Query: 185 DIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + +L A ++ P F +G VQD + + QL Sbjct: 173 RRDKVLAELQAEFPHAAATPYAPHGIRFRDKPALNKHPLFLDGTLEVQDEGSQLLAQLVQ 232 Query: 239 TLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294 V+D CA GGK + + ++ A D++++RL L+ + R L Sbjct: 233 AKRGEIVVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPEK 292 Query: 295 ---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 E D D VLVDAPCS GT+RR+PD+ + + + I + QR +L Sbjct: 293 IGSEHDPRVTRLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSPESIAQLVRQQRSILQAA 352 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + V PGG +V++ CS+ +++E V++ LR +P L +A +AL Sbjct: 353 SALVAPGGRLVYATCSVLPEENERQVEEFLRGNPQFSLL----NAGEILAAQKIALDTGK 408 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++++ D + DGFFA L+R Sbjct: 409 YLQL--------DSAAHQTDGFFAAVLQR 429 >gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275] Length = 419 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 197/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RTAHPDLMAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPIG--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLRERDKLVASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|329946677|ref|ZP_08294089.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 170 str. F0386] gi|328526488|gb|EGF53501.1| putative ribosomal RNA small subunit methyltransferase B [Actinomyces sp. oral taxon 170 str. F0386] Length = 463 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 102/472 (21%), Positives = 178/472 (37%), Gaps = 54/472 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + L+ V R LL L +RD A+ TLR R DA++ Sbjct: 2 ALEALTRVRRDDAFANLLLPELLDS---ADLDRRDAGFTTALTYGTLRLQGRYDAMISSC 58 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 +L R ++ +LR+ Q++ + VA +A V V+ A R A VN+I+RR Sbjct: 59 TDRTLERIDPTVLDVLRLGCHQLMGMRVAQHAAVSTTVDLAADSCG-RGAATFVNAIMRR 117 Query: 131 VSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDACI 173 +S + ++ A P+W + L + + A+ A Sbjct: 118 LSGQDLDAWMNDLRQSAPDETVALARTQSHPQWIVKALRQALTTHGRSADELEALLVADN 177 Query: 174 SPLYIDLTVKF------------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + L + H + + + + + + + Sbjct: 178 TDPEVALCARPGLIAPEALAKIARKADRVHDVEPRLGRISPLAVVMVGGDPGRIEAIRDS 237 Query: 222 VWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSK 273 V+D + I + + LDLCA PGGK A+ GA + A ++S Sbjct: 238 RAGVEDEGSQLVALIAAEAPLEGRDERWLDLCAGPGGKAALLAARAGQKGAHLLANEISP 297 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R + +R L + + D D +D VLVDAPC+ G++RR P+ W Sbjct: 298 HRADLVRSALRAVPQDTVHVRCGDGRDVGRDEPDCYDRVLVDAPCTGLGSLRRRPEARWR 357 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPV 388 R +D+ A QR+LL + V+ GG+V + CS ++ VV+ ++L+ + Sbjct: 358 RRHEDVAVLAELQRELLTSALHAVRRGGVVTYVTCSPHALETSLVVRDVTRLLKRQGLSA 417 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E++ + A + +++ P + G D F LRR Sbjct: 418 EILHAGDVATRLAPQPPAGADREMLQLWPHL--------DGTDAMFCALLRR 461 >gi|229820540|ref|YP_002882066.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333] gi|229566453|gb|ACQ80304.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333] Length = 480 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 104/463 (22%), Positives = 161/463 (34%), Gaps = 47/463 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +L V R +L + R LS RD + TLR R DA+L Sbjct: 29 FDVLRAVERDDAYANLVLPALLAE---RGLSGRDAAFATELAYGTLRMRGRYDAILAIAS 85 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 L +LR+ Q+L + VA +A V V A+ + N++LR + Sbjct: 86 TRPPQELDPPLLDVLRLGAHQLLGMRVAAHAAVSETVTLAREVVG-AGASSYANAVLRAI 144 Query: 132 SREKIELLQRI------------AGISIIPEWFKERLENF----------YGKERVLAIS 169 R + E R PEW E +LA+ Sbjct: 145 GRAEPEEWDRRLAERTTDPTALLTRRLSHPEWVVRAFREALALDDGAVVGDAGEELLALL 204 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 +A + + L + + A S+ G VQD Sbjct: 205 EADNAAPAVTLVARPGLAGIRDLPGATPARWARTAAVLGAGDPASIEAVRTGRAAVQDEG 264 Query: 230 AS----IPVQLFGTLNNLSVLDLCAAPGGKTA------QLIVSGAKVTALDVSKRRLEKL 279 + + + LDLCA PGGKTA G ++ A +V R + + Sbjct: 265 SQLVALALAAAPVDGPDDAWLDLCAGPGGKTALLSSLLAERGEGGRLLAAEVVPHRADLV 324 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R + L ++ +D + ++ FD VLVDAPC+ G +RR P+ W R D+ Sbjct: 325 RRAVRALPPGLVEVRALDGRELGTERPGAFDRVLVDAPCTGLGALRRRPEARWRRSPADL 384 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 QR LL + V+PGG+V + CS ++ V + +EL+ + Sbjct: 385 ASLGPLQRDLLTSAVGAVRPGGVVAYVTCSPHLAETRVV-VDDVMRRVGGLELLDAAAVL 443 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +M L + ++ P G D F LRR Sbjct: 444 DGVSQESMHLGAGPYAQLWPH--------RHGTDAMFLALLRR 478 >gi|296137329|ref|YP_003644571.1| sun protein [Thiomonas intermedia K12] gi|295797451|gb|ADG32241.1| sun protein [Thiomonas intermedia K12] Length = 457 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 110/452 (24%), Positives = 175/452 (38%), Gaps = 41/452 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ V + SL+ L + + +A+ LR L + A+L Sbjct: 24 ACAQLIGAV-QAGASLSTALPQAATRGKW---DASQRGAAQALSFAVLRHLGTVRALLTD 79 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADY----AVVDLAVEQAKRDKENRHFAKLVN 125 + + L+ +L+ ++A +L D + VV+ AVE KR RH N Sbjct: 80 LQPKPIH--PPLLRDVLQTALALLL-PDAPAHYAAHTVVNQAVEACKRTPSLRHAQGFAN 136 Query: 126 SILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LYIDL 180 ++LRR + ++ + P+W+ + L++ Y + + A P + + + Sbjct: 137 ALLRRFVSRTADIEAVRMRTLEARWNHPDWWVQALQSAYPADWQGVLEVAQRQPAMTLRV 196 Query: 181 TVK-FDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + + L A LP + + ++ LPGF G VQDA+A Sbjct: 197 NPRLQSRTAYQAALAACGLPCTAPDDPLLDQALILKQAVAVERLPGFERGWVSVQDAAAQ 256 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L VLD CAAPGGKTA L + ALD +RL ++ LDRL L A Sbjct: 257 YAAALLDVQPGQRVLDACAAPGGKTAHLLERCDCDLLALDKDAQRLRRVEDTLDRLGLQA 316 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS++G RRHPD+ W R DI A Q LL Sbjct: 317 RTLAADAAHPATWWDGQPFDRILLDAPCSASGIARRHPDIRWLRRAADIPALAATQAVLL 376 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG +++ CS+ Q+ E + L + + Sbjct: 377 DALWPLLRPGGKLLYVTCSVFPQEGVEQARAFLARHADAIASPAPGQLLPQEPAFDQTRD 436 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G R DGFF + Sbjct: 437 DPGAAR-------------HSQDGFFYALFTK 455 >gi|240129165|ref|ZP_04741826.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 417 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 61 LAQMLKKLID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 177 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 296 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 297 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 357 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIQK 416 >gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 419 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 196/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAHIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKLID--NPQLESLLLAALYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 VLRRFLREREKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNIAAALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLVAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL---YAE 291 L + +LD CAAPGGKT ++ + +VTALD+ RL+++ N+ RL A Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCRVTALDIDAGRLKRVEDNIARLGFQTASAA 298 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + K FDA+L D PC+++G RR+PDV W R D +K+A Q LL Sbjct: 299 CADARDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDALKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG ++ + CS+ ++++ +QK L P+ S Sbjct: 359 WQALKQGGRMLLATCSVFVEENDGQLQKFLNRHADA---EPIESRV-------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIQK 418 >gi|77166463|ref|YP_344988.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrosococcus oceani ATCC 19707] gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 403 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 107/420 (25%), Positives = 185/420 (44%), Gaps = 35/420 (8%) Query: 38 FRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD 97 L RDQ + + LR+LPR+D + +L L + L LL + + Q+ L Sbjct: 1 MAHLPARDQAFTQTLCYGVLRWLPRLDYLAQKILHKPLRARDRDLYALLLLGLYQLTELG 60 Query: 98 VADYAVVDLAVEQAK---RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 + +A + V A+ + + + + LR + + ++ + P+W + Sbjct: 61 IPSHAALSETVNAAESLGKPWAKKMLNATLRAYLRNETALQTQVTAHETAHTAHPQWLLD 120 Query: 155 RLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAV------MLPTGGIRL 205 + N + + I A S + L + + + + + +L + T + Sbjct: 121 AIRNSWP-DHWPQIITANNSHPPLSLRINRLQNNRKNYLQELKRNDIKAWPIPHTESGVI 179 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265 E P + +LPGF +G VQD + L VLD CAAPGGKT+ ++ + Sbjct: 180 LEQPCQVATLPGFLKGQVSVQDGAGQRAAPLLALTPGQRVLDACAAPGGKTSHILELEPQ 239 Query: 266 V---TALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTG 320 + ALD+ RLE+L NL RL L AE I + + FD +L+DAPCS +G Sbjct: 240 LETLIALDLDATRLERLNSNLKRLQLKAEVIQGNALQPDTWWDGIPFDRILLDAPCSGSG 299 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 IRRHPD+ R DI+ A Q++LL + PGG++++ CS+ ++E+ +++ Sbjct: 300 VIRRHPDIKALRRESDILPLATLQKRLLSALWPLLAPGGMLLYCTCSILPIENEQQIREF 359 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + P E + +D+ L ++ M E +DGF+ L + Sbjct: 360 LLTHPDGQE---------RPLDVPWGLLQTAGRQLLTGMEE--------LDGFYYACLEK 402 >gi|15677216|ref|NP_274369.1| SUN-family protein [Neisseria meningitidis MC58] gi|7226595|gb|AAF41725.1| putative fmu and fmv protein [Neisseria meningitidis MC58] gi|316984157|gb|EFV63135.1| NOL1/NOP2/sun family protein [Neisseria meningitidis H44/76] gi|325134414|gb|EGC57059.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M13399] gi|325140430|gb|EGC62951.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis CU385] gi|325144514|gb|EGC66813.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240013] gi|325200029|gb|ADY95484.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis H44/76] gi|325205882|gb|ADZ01335.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M04-240196] Length = 418 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 166/446 (37%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L +D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFREHK--KLGSQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTEFSDSLNTAAELPQWLVEQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 DA D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDARIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LAGLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSARHQTDGFFAAVLQRK 418 >gi|303233972|ref|ZP_07320621.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna BVS033A4] gi|302494897|gb|EFL54654.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna BVS033A4] Length = 423 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 100/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 + L +RD ++ V + ID V+ + R + ++LR++ Sbjct: 22 SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFIDYVISKCSDLEINRLDKIVLEILRMA 81 Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-RIAGISII 148 +IL++ ADYAVVD AVE A + VN++LR V R ++ I Sbjct: 82 TTEILFMKTADYAVVDEAVELASSITR---YKDYVNAVLREVCRINVDSEDLEDDIKFSI 138 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTG 201 + + L Y K+ V + + + E Sbjct: 139 NKDLLKMLNKSYSKKTVRKLLKSFFYKSDFVIKQNKLKENNLKINLENQGFALNDHPFLK 198 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 + E PESI+ F EG + +QD S S+ ++ L N +LD+CAAPG K+ + Sbjct: 199 DSFIVENPESIIDTKEFKEGKFLIQDGSCSLCAEILEPLENSIILDICAAPGSKSCNIQE 258 Query: 262 SGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316 D+++ ++ +++ N+++ + + DA FD +LVDAPC Sbjct: 259 ITNNQSIIYCNDINQNKIARIKENVEKCAVKNVQYMNFDATILQKDLINKFDRILVDAPC 318 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S+TG I ++P++ R D+ QR++L ++K GGI+V+S CSL K+++EE Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVNTQRQILENCEKYLKEGGILVYSTCSLLKEENEEN 378 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V+ + + + K D+ +I++ P G GFF Sbjct: 379 VE-FIENR-----------LHLKRKDIEFYGDKNEFIKLMP--------FQKGTQGFFIS 418 Query: 437 ALRR 440 + Sbjct: 419 KFVK 422 >gi|108761514|ref|YP_630797.1| RsmB/NOP family methyltransferase [Myxococcus xanthus DK 1622] gi|108465394|gb|ABF90579.1| methyltransferase, RsmB/NOP family [Myxococcus xanthus DK 1622] Length = 472 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 174/450 (38%), Gaps = 40/450 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + LD A L ++ V V LR +D +L Sbjct: 43 QACLEAYGSVRHEGRMADRALDFTLRRKA--NLYSNERRAVAERVYGLLRRQRTVDFLLS 100 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + S Q +LR++ +++LY + + +V A L Sbjct: 101 RAHPR-FDSLETSRQDVLRLAASRVLYGE--PHGLVARQSALA-----PPDAQALGALPE 152 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDI 186 + E + +R + +P++ +R +G++ A + +K D Sbjct: 153 AAAALEALPARERFPIAASLPDFLADRFLQTFGRDAARAAEAMNERAPLVARANLLKGDR 212 Query: 187 ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + A +L A + L + + SL F EG+ +QD + + Sbjct: 213 DALAQRLKAETVDVKPTPLSPMGLVLETRINAFSLESFREGMLELQDEGSQLLGM-LVDA 271 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--- 294 V+D CA GGKT Q + + + ALD+ +RR+E L+ R ++ Sbjct: 272 PPTRVVDACAGAGGKTLQLAAQMKNRGDLHALDIDERRMEDLKKRARRAGVHNVRAQLIP 331 Query: 295 ----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 E DA K D VLVDAPCS TGT RR PD + +D+ Q+ LL + Sbjct: 332 HEGPEADAALTPLKGKADRVLVDAPCSGTGTFRRKPDARYRLTPEDLEMHVGRQKALLAR 391 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + VKPGG +++ CS+ ++++E VV+ L P E A ++A + P Sbjct: 392 FATLVKPGGRLIYGTCSVLREENENVVEDFLAKHP---EFTVKPVAELLGAELAEKVGPG 448 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++R+ P + G DGFF L R Sbjct: 449 PFLRLAPH--------THGTDGFFGAVLVR 470 >gi|74318616|ref|YP_316356.1| putative tRNA and rRNA cytosine-C5-methylase [Thiobacillus denitrificans ATCC 25259] gi|74058111|gb|AAZ98551.1| putative tRNA and rRNA cytosine-C5-methylase [Thiobacillus denitrificans ATCC 25259] Length = 415 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 92/448 (20%), Positives = 161/448 (35%), Gaps = 60/448 (13%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ L V+ + +L + ++ L RD+ V V LR + V Sbjct: 9 QLATQALDLVLDFKRPADAVLSAFFRENR--KLGARDRGFVAEAVFGVLRRYRYLSHV-- 64 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +P + + + K L Sbjct: 65 ------VPAANPRTLIIAWL---------------------IKIQGMSGAALEKFAKPEL 97 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 R +A + +P+W ++L +LA+ A P +D+ V D Sbjct: 98 VDHIRSARPEGLPLAVTAELPDWVVDKLRPSMSDADILALGRALQQPAPLDVRVNTQKTD 157 Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + +L A + +I P F +G VQD + + L Sbjct: 158 RDVVLARLQAEGMAVEITPFSPWGLRFKDHPAINRHPLFLDGSLEVQDEGSQLLALLLEA 217 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292 V D CA GGK + S ++ A DV+++RL KL+ L R L Sbjct: 218 RRGEMVCDFCAGAGGKTLAVGATMASTGRLYAFDVAEKRLAKLKPRLARSGLSNVMPELI 277 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D D VLVDAPCS GT+RR+PD+ + + + + + A Q ++ Sbjct: 278 ASENDVRVKRLAGKLDRVLVDAPCSGLGTLRRNPDLKFRQSAESVAELAAKQASIVRAAA 337 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V++ CS+ +++E +V+ ++ L P+N + + L Sbjct: 338 RLLKVGGRLVYATCSILPEENEAIVEGLVAE--GGFALQPVNEILAQH---KIPLDTGPM 392 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++++P DGFFA L + Sbjct: 393 LKLSP--------AIHRTDGFFAAVLTK 412 >gi|83748628|ref|ZP_00945646.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551] gi|207741954|ref|YP_002258346.1| rna methyltransferase (sun protein) [Ralstonia solanacearum IPO1609] gi|83724672|gb|EAP71832.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551] gi|206593340|emb|CAQ60267.1| probable rna methyltransferase (sun protein) [Ralstonia solanacearum IPO1609] Length = 443 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 107/438 (24%), Positives = 166/438 (37%), Gaps = 34/438 (7%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ ++L +D + V+ + T R+L D ++ ++ Sbjct: 22 LRQGMALPQAIDAACAGQPGPT-----RGAVQDLAYRTTRWLGSADWLIRTLIPRPPAEG 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + VVD AV A D + H +VN +LRR RE+ Sbjct: 77 TA---NLLRVALAQLLDTPPPYAPFTVVDQAVRAASADPKLAHAKGMVNGVLRRFLREQG 133 Query: 137 E----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 + + + P W+ + Y ++ P + + V + Sbjct: 134 DLAAAMQADPVAATNYPVWWINAVREAYPDAWQAILAAGNRRPPMVLRVNPRRVPVDAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + LPGFAEG VQDA A + L VL Sbjct: 194 ARLAEGGIEAERIGAQAVRLARAVPVGDLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT +V G V AL+ R E++ NL RL A + Sbjct: 254 DACAAPGGKTGHLLELVDGLDVVALESDGARAERIGENLARLGQIATVCVGDAAKPDAWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +LVD PCS+ G +RRHPD+ W R D+ A QR ++ + +KPGG +V Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAVLQRDIVSALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E V+ + L + A + P Sbjct: 374 YVTCSIFPTEGEAQVRWFESRLQDAIRLHAPGQLLPAMPEAAPVGGFVPGVSSLP----- 428 Query: 423 IDGVSSGMDGFFAVALRR 440 DGF+ ++ Sbjct: 429 -----LDHDGFYYAVFQK 441 >gi|163797470|ref|ZP_02191421.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199] gi|159177219|gb|EDP61778.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199] Length = 439 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 101/449 (22%), Positives = 170/449 (37%), Gaps = 41/449 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +L + +LD D + + D+ ++ V R R+D + Sbjct: 2 IEVLEAIGATERPADRVLDRYLKDRRY--IGSGDRGMIANRVWAVQRRRARLDWWIHK-A 58 Query: 72 ISSLPRKKY--SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L R L ++ + D AD A + + + R + +++ R Sbjct: 59 GKGLQRNARGRVLADVVLI--------DGADVARIAELFDGS-RHAPDAVTRDESDALRR 109 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKE---RVLAISDACISPLYIDLTVKFDI 186 V R + P W R++ +G + V + + L I+ D Sbjct: 110 LVGRSLDHPDMPPPVQAECPNWLWPRMQAVFGDDVDLAVRTLGEEASFDLRINPLAGADR 169 Query: 187 ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +L +P L + +P F +G VQD + I L G Sbjct: 170 PAVIAELAVASVPAEPTPLSPLGLRLDRRRPVDRMPAFKDGRIEVQDEGSQIAAALVGAQ 229 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE---DII 294 V+D CA GGK A + + ++ DVSK RL++ L R + ++ Sbjct: 230 PGQLVVDYCAGAGGKSLALAADMANKGRLLLFDVSKSRLDRAAVRLRRGGVNNAERRPLV 289 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D D VLVDAPC+ TGT RR+PD W D D + + QR +L + + Sbjct: 290 EGDKSVKRLAGKVDRVLVDAPCTGTGTWRRNPDAKWRYDADALAEITKVQRTILERAAAL 349 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM---AMALSPEG 411 VKPGG +V+ CS+ ++E+VV L + + +P+ + ++ + Sbjct: 350 VKPGGRLVYVTCSVLTDENEQVVDGFLAET-TSFKALPMAEVWAATVGASGGGACPADGA 408 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++R++P G DGFF L R Sbjct: 409 YLRLSPH--------RHGTDGFFVAVLER 429 >gi|261364296|ref|ZP_05977179.1| methyltransferase, RsmB/NOP family [Neisseria mucosa ATCC 25996] gi|288567546|gb|EFC89106.1| methyltransferase, RsmB/NOP family [Neisseria mucosa ATCC 25996] Length = 419 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + TLR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSGYFREHK--KLGRQDRHEIAETAFATLRHYQK----ISAAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLSGL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDDLHTAAELPQWLVEQLQKHFNEEEILAFGRSINQAAPLDIRVNTLKGRRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK +V+ ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMVNKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDSRIARLTGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETVAKLLEQQHSILDAAAKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P L ID+ ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENEMQVERFLEEHPEYELLDCAELLAGLKIDLNTG----KYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|295689967|ref|YP_003593660.1| Fmu (Sun) domain-containing protein [Caulobacter segnis ATCC 21756] gi|295431870|gb|ADG11042.1| Fmu (Sun) domain protein [Caulobacter segnis ATCC 21756] Length = 426 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 161/448 (35%), Gaps = 52/448 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + +L+ + + + L + + +D+ V +V LR + ++ Sbjct: 9 AAIEVLTEIETRHFPVKMALKRWGEAARYAG--SKDRAFVSGLVLDALRRKRSLGWMMGD 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + +L + A+ E F L ++ Sbjct: 67 ASPRG------VVLGVL-------------AFTWAWTPERIAEATAEEHGFGALTDAERE 107 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKFDIET 188 R++ + P+W +ERL G ++ + + + + Sbjct: 108 RLASPIALGNAPAPVVGDYPDWLEERLIRTLGADQTVEMRALSERAPVDLRVNTLKTDAE 167 Query: 189 WAHKLNAVMLPTGGIRLKELPE-----------SIVSLPGFAEGVWWVQDASASIPVQLF 237 A K A + L S+ ++P F++G + VQD + I + Sbjct: 168 RAAKALAPIHAAPAGILPNAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAAVA 227 Query: 238 GTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + VLD CA GGKT A + + ++ A D RRL R + I Sbjct: 228 GEVKGKQVLDFCAGGGGKTLALAAAMGNSGQIFAHDADARRLADTIRRGQRAGVRNLQIR 287 Query: 295 EMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D V VDAPC+ GT RRHPD W D + K Q +L Sbjct: 288 SPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLEDAA 347 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +FVK GG +V+ CSL ++E+ V L P + P+ A + ++PEG+ Sbjct: 348 TFVKAGGRMVYVTCSLLTDENEDRVAGFLERHP-EFTVKPIALA-----GVEQHVTPEGY 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+TP +G DGFFA L R Sbjct: 402 LRLTP--------YRAGTDGFFAAVLER 421 >gi|167917913|ref|ZP_02505004.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei BCC215] Length = 420 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 101/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + V V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG+ VQD + + L Sbjct: 167 DNLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V L + P ELVP + A + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRALAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methylase [Amycolatopsis orientalis subsp. vinearia] Length = 474 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 88/460 (19%), Positives = 162/460 (35%), Gaps = 43/460 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L+ V K +L + R ++ RD L + R +DA Sbjct: 32 PARQAAFDVLAAVRTKDAYANLVLPDLLRE---RRITGRDAALATELAYGASRAQGLLDA 88 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V++ L + ++ LR+ V Q+L + +A V V+ + + N Sbjct: 89 VIESCAERPLSQTDPAVLDALRLGVYQLLRTRIPGHAAVTSTVDLVRAE-GGSWATGFAN 147 Query: 126 SILRRVSREKIELLQR-------------IAGISIIPEWFKERLENFYGKERV--LAISD 170 +++R+VS + A + P W G + A + Sbjct: 148 AVMRKVSEKDEAAWLDELAPDDAADPIGAYALRTAHPRWIARSFAEALGDKGAGLKAALE 207 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 A + + L + + A G+ L + E + V Sbjct: 208 ADDARPEVHLVARPGEISADELAAITGGDPAPYSPYGVHLPAGAGDPAGMEPVRERLAAV 267 Query: 226 QDASASIP----VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280 QD + + ++ + LDLCA PGGK A L A A D + + + Sbjct: 268 QDEGSQLCAIAATKVPVEGTDERWLDLCAGPGGKAALLGALAALSGATVDAVEIAPHRAK 327 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + D + + +D +LVDAPCS G +RR P+ W R D+ Sbjct: 328 LVEKATTGLPVKVHVADGRESGLEPGYDRILVDAPCSGLGALRRRPEARWRRQPSDVADL 387 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L+ + ++PGG + + CS ++E V+ + R + E++ + Sbjct: 388 TKLQGELINAAYALLRPGGALTYVVCSPHLAETEGVLTETARR--LKAEVLDARGLFPGV 445 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ ++++ P G D F LR+ Sbjct: 446 PELGDGP----YVQLWPH--------RHGTDAMFCGVLRK 473 >gi|254251627|ref|ZP_04944945.1| hypothetical protein BDAG_00819 [Burkholderia dolosa AUO158] gi|124894236|gb|EAY68116.1| hypothetical protein BDAG_00819 [Burkholderia dolosa AUO158] Length = 420 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 97/446 (21%), Positives = 157/446 (35%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRLT-------LLGLMQ------------------TVGRNALKPFVSADEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + + + +P+W + L + + + ++ A P +DL + Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALATRFDADELAQLAAALNYPAPLDLRANVLKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L AV + G + L F EG VQD + + L Sbjct: 167 DGLRAVGIDAGATPFAPHGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT + S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSVDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E++V + L P LVP D +AL ++ + P Sbjct: 347 GGRLVYATCSVLDAENEQIVAQFLADHP-DFVLVPAQKVL---ADQRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|312114445|ref|YP_004012041.1| Fmu (Sun) domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219574|gb|ADP70942.1| Fmu (Sun) domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 432 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 93/462 (20%), Positives = 148/462 (32%), Gaps = 51/462 (11%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M++G AR + +LS + + + L F D+ + +V +LR Sbjct: 1 MQTG--ARLQAAIEILSEIRERGRPASVALADWGRSHRFAG--SGDRAWIGNLVYDSLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + +++ + L S L D AV+ E A Sbjct: 57 KGSLAFLMNC------DEPRPVALAALHCS----WGLTADDIAVLCSGEEHAPEPLTAAE 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A L + L PEW R + A + +D Sbjct: 107 IAGLESGDLSAAPAHVQGD---------YPEWLAAS-FAAAFGARAIEEGKALANRAPVD 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQ 226 L V T L A ++ + P +G + VQ Sbjct: 157 LRVNTLKATRDKVLKAFDRHNAVETPWSPIGVRLPPREGGARNPNVEADPAHGKGWFEVQ 216 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + I + + V DLCA GGKT A + + ++ A D R + L Sbjct: 217 DEGSQIAALIADAEPRMQVADLCAGSGGKTLALAAHMQNTGQIYAYDADATRFRPIFERL 276 Query: 284 DRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ D VLVDAPC+ TG RR PD W + + Sbjct: 277 KRAGARNVQTLQPGETAALDPLAGHMDLVLVDAPCTGTGVWRRKPDAKWRLSPAQLDERV 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL-VPLNSAYWKS 400 Q LL + VKPGG + + CS+ ++++ ++ L +P + V + Sbjct: 337 ATQSTLLDVAATLVKPGGKLAYVTCSILPEENQHQIEAFLARAPGFAAIDVARRAKDVLG 396 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + A + EG + S DGFF L R Sbjct: 397 RTVETAYAGEG-------HGLLLTPASHETDGFFIALLTRTA 431 >gi|227542164|ref|ZP_03972213.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181993|gb|EEI62965.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 620 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 108/506 (21%), Positives = 182/506 (35%), Gaps = 94/506 (18%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL++ L V L E + LS RD I T+R + +D + Sbjct: 140 PRLITLSALGAVFNDGAYGNIALPREITE---AGLSGRDAAFATEIGYGTMRMVGVLDEI 196 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + LR+ + Q+LY V D+A VD +V + VN+ Sbjct: 197 IGSCSSRPMSELDPIVLNALRMGIYQLLYTRVEDHAAVDTSVRLV-----PQRVKGFVNA 251 Query: 127 ILRRVSREKIELLQ----------RIAGISIIPEWFKERL-------------------- 156 ILR V ++ +E ++A + PEW Sbjct: 252 ILRAVQKKPLEQWIEELAPEGKLAQLAFRTGHPEWIARSYLATLSAPSGAVPSANGVGTE 311 Query: 157 ----------------------------ENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + + +A + + L K Sbjct: 312 SSADGARADASAARSDPSTDPSAEPSTGSSTILFDELAKALEADSTRPIVHLAAKPGEIS 371 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP----VQLFGTLN 241 + A + + E + ++QD + + V++ + Sbjct: 372 ADELALITGGEEGAYSPYAVYLEGGNPADFEPVQEKLAFIQDEGSQLIGAALVRVDVDND 431 Query: 242 NLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 LDLCA PGGK + + GA VTA++++ R + +R + L ++ D Sbjct: 432 AGRWLDLCAGPGGKATMIGSLAAIDGATVTAVEIAPHRGDLIRKATE--GLP-VTVVVGD 488 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 FD VLVDAPCS G++RR + WT+D DI + Q +LL G+S KP Sbjct: 489 GRTVDVGSSFDRVLVDAPCSGLGSLRRRQESRWTKDESDIEELTALQYELLEAGVSRCKP 548 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG+VV+S CS D +++ E+V K L + P VE + + ++ E +++ Sbjct: 549 GGVVVYSTCSPDLRETREIVDKALVTLP--VEELDAHPLVAPMDNVGR----EKSVQMW- 601 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 G D F LR+ + Sbjct: 602 -------TYRHGTDSMFFAVLRKKAE 620 >gi|169824361|ref|YP_001691972.1| putative rRNA methylase [Finegoldia magna ATCC 29328] gi|167831166|dbj|BAG08082.1| putative rRNA methylase [Finegoldia magna ATCC 29328] Length = 423 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 99/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 + L +RD ++ V + +D V+ + R + ++LR++ Sbjct: 22 SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFVDYVISKCSDLEINRLDKIVLEILRMA 81 Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-RIAGISII 148 +IL++ ADYAVVD AVE A + VN++LR V R ++ I Sbjct: 82 TTEILFMKTADYAVVDEAVELAGSITR---YKDYVNAVLREVCRINVDSEDLEDDIKFSI 138 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTG 201 + + L Y K+ V + + + E Sbjct: 139 NKDLLKMLNKSYSKKTVRKLLKSFFYKSDFVIKQNKLKENNLKINLENQGFALNDHPFLK 198 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 + E PESI+ F EG + +QD S S+ ++ L N +LD+CAAPG K+ + Sbjct: 199 DSFIVENPESIIDTKEFKEGKFLIQDGSCSLCAEILEPLENSIILDICAAPGSKSCNIQE 258 Query: 262 SGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316 D+++ ++ +++ N+++ + + DA FD +LVDAPC Sbjct: 259 ITNNQSIIYCNDINQNKIARIKENVEKCAVKNVQYMNFDATTLQKDLINKFDRILVDAPC 318 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S+TG I ++P++ R D+ QR++L ++K GGI+V+S CSL K+++EE Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVNTQRQILENCEKYLKKGGILVYSTCSLLKEENEEN 378 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V+ + + + K D+ +I++ P G GFF Sbjct: 379 VE-FIENR-----------LHLKRKDIEFYGDKNEFIKLMP--------FQKGTQGFFIS 418 Query: 437 ALRR 440 + Sbjct: 419 KFVK 422 >gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus tetradius ATCC 35098] gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus tetradius ATCC 35098] Length = 433 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 94/441 (21%), Positives = 181/441 (41%), Gaps = 50/441 (11%) Query: 25 LTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 + + + + + L+++ Q ++ L +D ++ + + + ++ Sbjct: 12 VNIIYEDKKSNDEINYLAKKVQGLAYATKLIYGVLENKIYLDYMIGKLSKVKIKKIHKNV 71 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR--------E 134 +L + + I +L DYA+VD VE K+ +N+ A VN+ILR R Sbjct: 72 LTILEMGLYNIHFLATKDYAIVDKLVELCKK--KNKRSANFVNAILRNFIRNEEDLAKIY 129 Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAH 191 + ++ ++ +PE + + YG + + V D E+ Sbjct: 130 INDDIKALSIRYSMPEEISRYIYDNYGMAYTKNFLRYTNDEARLSIRVNSLKTDRESLKK 189 Query: 192 KLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +L A+ + + P + + F EG++ +Q ++ V++ N + Sbjct: 190 RLEALGYELSLSKISDRALIIHNPSGLANSLEFKEGLFTIQQEASMKTVEVLNPKRNSRI 249 Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD+CAAPG KT+ + K+ A D+S +L ++ N++RL L +I D + Sbjct: 250 LDICAAPGTKTSYLAEYTSNTGKIIANDISTNKLCLIKENIERLALTNIEIKSFDGSVFN 309 Query: 303 PKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD +LVDAPCS G + R P++ + R DDI + QR++L I ++K GG Sbjct: 310 KEYEKSFDYILVDAPCSGLGVMARKPEIRYNRSLDDIRTLSILQREILDTSIRYLKDGGE 369 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L ++ + L+ +ELV + Sbjct: 370 LVYSTCTLGPIENLDNFNY-LKGH-DQLELVQVEGK----------------------DY 405 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + DGFF ++ Sbjct: 406 IEFVCFEDKTDGFFISKFKKK 426 >gi|193222389|emb|CAL62602.2| putative methyltransferase [Herminiimonas arsenicoxydans] Length = 418 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 102/446 (22%), Positives = 174/446 (39%), Gaps = 56/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L ++R L + D L R++ +V V LR AV Sbjct: 13 EVLREILRFTGPADSTLSRYFRDHP--RLGSRERGVVAEAVYGLLRNK----AVYTSFAE 66 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S +++++ + +A + +D + + Sbjct: 67 SG---NGPTMRRMTLLGLADAVGVDALGGLSEEETEWL-------------------KHV 104 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + L + +PEW ++L G+ L ++ A P +DL V E Sbjct: 105 MQIDRTLLPSLLRANLPEWLFDKLVARDGEAATLELAYAMNQPAPLDLRVNAIKATREDV 164 Query: 190 AHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +L + L + +LP F G VQD + + Q+ G Sbjct: 165 VAELAKAPILCELTPFAPLGIRVIKKPALQNLPLFKSGAIEVQDEGSQLLSQIVGAKRGE 224 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT + + ++ A D+S++RL KL+ L R L E Sbjct: 225 MVVDFCAGAGGKTLSLGATMRNTGRLYAFDISEKRLVKLKPRLARSGLSNVHPVQIAHEN 284 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PDV W + +V+ Q +L VK Sbjct: 285 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDVKWRQTPQSLVELNAKQASILAGAARLVK 344 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++E +V++ L + LVP++ + + L+ + +++++ Sbjct: 345 AGGRLVYATCSILDEENEAIVEQFLAAR-EDFVLVPMSEVLAE---QKVDLAMDKYLKLS 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P DGFFA L+R Sbjct: 401 P--------AKHQTDGFFAAVLQRKT 418 >gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria flavescens SK114] gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria flavescens SK114] Length = 417 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 118/449 (26%), Positives = 197/449 (43%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSVAAV-AEGRNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + + F N+ Sbjct: 61 LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L N Y K I+ A S + L V Sbjct: 118 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLRNHYPKHW-HNITTALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A +P + E + LPGF++G+ VQD A Sbjct: 177 NRRHGNAESYLEKLAAEGIPARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGAQRAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + VTALD+ + RL +++ NLDRL + Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQTASLT 296 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D VK+A Q LL Sbjct: 297 CADAQDLTAWYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + G ++ + CS+ ++++ +QK L EL+ Sbjct: 357 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESRV---------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIKK 416 >gi|300310511|ref|YP_003774603.1| tRNA and rRNA cytosine-C5-methylase [Herbaspirillum seropedicae SmR1] gi|300073296|gb|ADJ62695.1| tRNA and rRNA cytosine-C5-methylase protein [Herbaspirillum seropedicae SmR1] Length = 419 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 107/448 (23%), Positives = 172/448 (38%), Gaps = 60/448 (13%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL V+R L + D+ L R++ ++ V LR VL Sbjct: 13 ELLREVLRFTGPADVTLSRYFRDNP--RLGSRERGVIAEAVYGLLRNKT----VLTNFAE 66 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S +++L + +A A L + Sbjct: 67 SG---SGPMMRRLALLGLA---------------------DAVGAESIAGLQEGEADWLE 102 Query: 133 REKIELLQRIA--GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 R ++A S +P W ++L G+ L +++A P +DL V D + Sbjct: 103 RVAQIDRTQLAAQMRSNLPPWLWDKLVARMGEAATLELAEAMNRPAPLDLRVNALKADRD 162 Query: 188 TWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLN 241 T +L + L + +LP F +G VQD + + Q+ G Sbjct: 163 TVIAELAKAPVACEPTPYSPLGLRVLKKPALQNLPLFKDGAIEVQDEGSQLLAQIVGAKR 222 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294 V+D CA GGKT L+ + ++ A DVS++RL KL+ L R L Sbjct: 223 GEMVVDFCAGAGGKTLALGALMRNTGRLYAFDVSEKRLAKLKPRLARSGLSNVHPVVIAH 282 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E DA D VLVDAPCS GT+RR+PD+ W + + + + Q +L Sbjct: 283 ENDAKVKRLAGKLDRVLVDAPCSGLGTLRRNPDMKWRQTVETLAEMRAKQSSILASAARL 342 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V+ GG +V+ CS +++++EV+ L+S P + L + +AL +++ Sbjct: 343 VRAGGRLVYGTCSFLEEENDEVIADFLQSHPDFI----LRPMGEVLAEQKIALEMGDYLK 398 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P DGFFA L R Sbjct: 399 LLPH--------QHQTDGFFAAVLERRA 418 >gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus Rock3-42] gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus Rock3-42] Length = 360 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 34/372 (9%) Query: 93 ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144 ++YLD V + A + AVE AKR + ++ A +VN +LR + RE + ++R+A Sbjct: 1 MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196 + P W + YG E + + + P V D T + A Sbjct: 60 ATSHPVWLVQEWTAEYGLETAEKMCEMNMLPPVPTARVNVDKITVEEAITLLASEGIEAK 119 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 ++ ++ F +G +QD S+ + + +LD CAAPGGKT Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKT 179 Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310 + +V +LD+ ++ ++ +RL L + +D ++ + FD + Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKI 239 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQFAILEKIAPLLKQGGRLVYSTCTIEK 299 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+V+++ L+ P E + + + EG ++I P Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA--------T 348 Query: 431 DGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 349 DGFYIACLRKKV 360 >gi|88705380|ref|ZP_01103091.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter litoralis KT71] gi|88700470|gb|EAQ97578.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter litoralis KT71] Length = 434 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 188/437 (43%), Gaps = 41/437 (9%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 SL + + L +RD+ L R I TLR R+DA+L +L L K Sbjct: 20 GGESLDRSFNAQIEK-----LPERDRALCREISYGTLRQFHRLDALLAQLLQKPLRAKDR 74 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI--EL 138 + L + Q+ + V +A V V+ A + R L+N++LRR R++ Sbjct: 75 DVHALALAGLYQLTEMRVPAHAAVSATVDAA-SVLKKRQLTGLLNAVLRRFQRDEATLTE 133 Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNA 195 A + P+W L + R I+ A S + L V + + L+ Sbjct: 134 KLTAAQNAAHPDWLWAALGEHWPDYR-EEIAAANNSHPPMTLRVNLSRGGRDEYREMLDQ 192 Query: 196 VMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + +L + SLPGF G+ VQD +A + QL +LD C Sbjct: 193 AGIASQAGQLSPAALTLDQAVDVTSLPGFEAGLCSVQDEAAQMAAQLLAPRAGERILDAC 252 Query: 250 AAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP 303 AAPGGKT L SG ++TA+D+S+ RL ++R NLDRL L A + + Sbjct: 253 AAPGGKTGHLLELQRSGMQLTAMDISEERLHRVRENLDRLGLEASLLVGDGARPSAELKA 312 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDA+L+D PCS++G IRRHPDV R +D A Q +L + PGG +++ Sbjct: 313 QAPFDAMLLDVPCSASGVIRRHPDVKILRRPEDTAGFARQQNAILDGLWPLLAPGGRLLY 372 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 +CS+ ++ EVV + E + + MA + ++ P Sbjct: 373 VSCSIMPGENSEVVAAFVSRHADARE---------EPLAMAASQPCAHGRQLLP------ 417 Query: 424 DGVSSGMDGFFAVALRR 440 +G DG + L + Sbjct: 418 --RPNGSDGLYFAMLYK 432 >gi|227484654|ref|ZP_03914970.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus lactolyticus ATCC 51172] gi|227237374|gb|EEI87389.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus lactolyticus ATCC 51172] Length = 428 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 101/455 (22%), Positives = 182/455 (40%), Gaps = 55/455 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++L V+ + + +++ ++ L + V L ID ++ Sbjct: 5 AIIFNILRRVIYEDEKSSDMINSYAAKASNLSL-------ITKTVYGVLENKIYIDYMIR 57 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + L + + +L + + I +L+ DYA VD V+ K +N+ VN+IL Sbjct: 58 KLSDVRLKKIHKHVLLILEIGIYNIHFLETKDYATVDKLVDLTKE--KNKRSTGFVNAIL 115 Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 R R++ E+ + + PE + + +FYG + A + + Sbjct: 116 RSFIRDEKEIAKIYETDDIKSLSIRYSFPEEITKYIYDFYGMDYTKAYLRDAGRIRDLAI 175 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V E L ++ P + S F +G++ +Q ++ Sbjct: 176 RVNTLKISREDLKKLLIKAGFEIEDGKISPNSLLVKNPAGLASCEAFKDGLFTIQQEASM 235 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 V++ N +LDLCAAPG KT + K+ A D+SK + + + N+ RL L Sbjct: 236 KVVEVLNPKENSKILDLCAAPGTKTTYLAEFTKNTGKIIANDISKAKNKLILENIQRLAL 295 Query: 289 YAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D F + FD LVDAPCS G + R P++ + R+ + IV+ A Q+ Sbjct: 296 ENISLTNYDASTFVSAFENEFDFCLVDAPCSGLGVVGRKPEIRYNRNKETIVRLADLQKD 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L+ I +VK GG +V+S C+L ++ K L + +EL Sbjct: 356 ILVNAIKYVKKGGYLVYSTCTLGPLENRNN-FKFLMDNK-DLEL---------------- 397 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I+I + + DGFF R++ Sbjct: 398 ------IQIDGQDFIEYKSFEANTDGFFISKFRKI 426 >gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC 4342] gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC 4342] gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 360 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 165/372 (44%), Gaps = 34/372 (9%) Query: 93 ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144 ++YLD V + A + AVE AKR + ++ A +VN +LR + RE + ++R+A Sbjct: 1 MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196 + P W + + YG E + + + P V D T + A Sbjct: 60 ATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEEAIALLASEGIEAK 119 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 ++ ++ F +G +QD S+ + + VLD CAAPGGKT Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKT 179 Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310 + +V +LD+ ++ ++ +RL L + +D ++ + FD + Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKI 239 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+V+++ L+ P + + + + EG ++I P Sbjct: 300 IENEQVIERFLQEHPEFEWDTTIKERMPEKLG---SYIDEGQVQILPHYFA--------T 348 Query: 431 DGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 349 DGFYIACLRKKV 360 >gi|86160386|ref|YP_467171.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776897|gb|ABC83734.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 455 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 125/458 (27%), Positives = 183/458 (39%), Gaps = 44/458 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ A L R+ L +V TLR +DA Sbjct: 12 ARGIAFEVLRRVDEGGAYASR--ALDAALGAAGALDPREAGLATQLVYGTLRRALALDAA 69 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + + LR+ Q+L L +A V V AK R A VN+ Sbjct: 70 LAPHSRRPLAELDPAARVALRLGAYQLLVLGTPAHAAVGETVTLAKAADHGR-AAGYVNA 128 Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR +SR +A +P W E + G LA++ A +P Sbjct: 129 VLRALSRAPRFPDPPALEADPAGHVAAAEALPRWVAEEWVAWLGAGEALALARAMNAPAP 188 Query: 178 IDLTVKFDIETWA-----HKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-WWVQDASAS 231 + + D E L A + S+ L A V + VQD +A Sbjct: 189 LCVR-TPDREALLGRARAAGLTAAPAARAPGGVVLTGASVAELAHAAGDVPFQVQDEAAQ 247 Query: 232 IPV---QLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 + VLD CAAPGGK L GA+V A+++ R+ ++L R Sbjct: 248 LVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAVELHPRKADELAREAAR 307 Query: 286 LHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L A ++ DA P FDAVLVDAPC+ GT+RRHP++ R D+ + A Sbjct: 308 RGLPAVRVVCADAGKPIPGLEPGSFDAVLVDAPCAGLGTLRRHPELKLRRAPGDLPRMAA 367 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR++ L + +PG VV+S CSL + + EVV+ +L P + + Sbjct: 368 LQRQIALNAARYARPGAPVVYSICSLSRAEGPEVVEALLAQ---GFRRAPPPAGFP---- 420 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A L +G + P G DGF+A L R Sbjct: 421 -ADVLDAQGDLLALPS--------RHGTDGFYAARLVR 449 >gi|311107260|ref|YP_003980113.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans A8] gi|310761949|gb|ADP17398.1| NOL1/NOP2/sun family protein [Achromobacter xylosoxidans A8] Length = 809 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 96/449 (21%), Positives = 156/449 (34%), Gaps = 59/449 (13%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L +++ L L RD+ V V LR L R Sbjct: 359 RVLGEILQWTYPADAALSHWLRHHP--NLGARDRSEVAEAVYDVLRHLRRY----RQFGE 412 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + L +L ++ + ++ A+ + + Sbjct: 413 SGVGPASRRL-AILGLAA-------TLGAEALTEGMDAAEAEWL-------------QRV 451 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + A IP+W ERL E + +A +DL V + + Sbjct: 452 SQIDLATLPRAVRGSIPDWLDERLGAMDSPET---LIEALNRQASLDLRVNPLKVERDAM 508 Query: 190 AHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L E +I P F G VQD + + L Sbjct: 509 LTELQQGAGRYEPVAMPYSPWGIRMEGRPAINRWPQFENGSIEVQDEGSQLLALLVAPRR 568 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 ++D CA GGKT L+ S ++ A DVS RL + + R L + Sbjct: 569 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVVIDS 628 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E DA VLVDAPCS GT+RR+PD+ W + + + + Q ++L Sbjct: 629 ENDARVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPEALAELGQLQERILNSAARC 688 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V PGG +V++ CSL +++E ++ L S P L + + + +++ Sbjct: 689 VAPGGRLVYATCSLLAEENEVQAERFLASHPDFERLDAAEILAARCETLKLDGP---YVQ 745 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + PD+ G DGFFA R + Sbjct: 746 LRPDV--------HGTDGFFAAVFERRKK 766 >gi|307730760|ref|YP_003907984.1| Fmu (Sun) domain-containing protein [Burkholderia sp. CCGE1003] gi|307585295|gb|ADN58693.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1003] Length = 419 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 98/443 (22%), Positives = 162/443 (36%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V+R + L ++ ++ V LR + + S Sbjct: 14 LLAEVLRLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + A + + V +A+ + S+ R+ Sbjct: 72 PARRMA-------LLGL-----MQTAGRSALKPFVSEAESKWLDHVATIDPESLPLRI-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 +P+W + L + + ++ A P +DL + Sbjct: 118 -----------RLNLPDWIHQALAKRFEAAELAQLAAALNYPAPLDLRANPIKASRDEVL 166 Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L+ + G + L F +G VQD + + L Sbjct: 167 SALSKAGIEAGATPFAPFGVRVAGKPPLTKLDAFQQGWLEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VVQ+ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHP-DFALVPAREVL---ADQRIDLEMGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|302380559|ref|ZP_07269024.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna ACS-171-V-Col3] gi|302311502|gb|EFK93518.1| putative ribosomal RNA small subunit methyltransferase B [Finegoldia magna ACS-171-V-Col3] Length = 423 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 99/424 (23%), Positives = 175/424 (41%), Gaps = 36/424 (8%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 + L +RD ++ V + ID V+ + R + ++LR++ Sbjct: 22 SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFIDYVISKCSDLEINRLDKIVLEILRMA 81 Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ-RIAGISII 148 +IL++ ADYAVVD AVE A + VN++LR V R ++ I Sbjct: 82 TTEILFMKTADYAVVDEAVELASSITR---YKDYVNAVLREVCRINVDSEDLEDDIKFSI 138 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTG 201 + + L Y K+ V + + + E Sbjct: 139 NKDLLKMLNKSYSKKTVRKLLKSFFYKSDFVIKQNKLKENNLKINLENQGFALNDHPFLK 198 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 + E PESI+ F EG + +QD S S+ ++ L N +LD+CAAPG K+ + Sbjct: 199 DSFIVENPESIIDTKEFKEGKFLIQDGSCSLCAEILEPLENSIILDICAAPGSKSCNIQE 258 Query: 262 SGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPC 316 D+++ ++ +++ N+++ + + DA FD +LVDAPC Sbjct: 259 ITNNQSIIYCNDINQNKIARIKENVEKCAVKNVQYMNFDATILQKDLINKFDRILVDAPC 318 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S+TG I ++P++ R D+ QR++L ++K GGI+V+S CSL K+++E+ Sbjct: 319 SATGVINKNPEIKLFRTKKDVENLVNTQRQILENCEKYLKEGGILVYSTCSLLKEENEKN 378 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V+ + + + K D+ +I++ P G GFF Sbjct: 379 VE-FIENR-----------LHLKRKDIEFYGDKNEFIKLMP--------FQKGTQGFFIS 418 Query: 437 ALRR 440 + Sbjct: 419 KFVK 422 >gi|299068350|emb|CBJ39574.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Ralstonia solanacearum CMR15] Length = 441 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 163/438 (37%), Gaps = 36/438 (8%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ +L +D + V+ + R+L D ++ ++ Sbjct: 22 LRQGTALPQAIDAAC-----PGQPGATRGAVQDLAYRATRWLGSADWLIRTLIPRPPAEG 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + VVD V A D + H ++N +LRR RE+ Sbjct: 77 AA---NLLRVALAQLLDTPAPYAPFTVVDQTVRAASADPKLAHAKGMINGVLRRFLREQA 133 Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 +L + P W+ + Y + ++ P + + V+ + Sbjct: 134 DLTAAMQADPVAAINYPAWWIGAVREAYPEAWQAILAAGNRRPPMVLRVNPGRVPVEAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + LPGFAEG VQDA A + L VL Sbjct: 194 ARLAEAGIEAERIGAQAVRLARAMPVGELPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT + G V AL+ R ++ NL RL A + Sbjct: 254 DACAAPGGKTGHLLELADGLDVVALESDAARAARIGENLARLGQTATVCVGDAAKPDAWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +LVD PCS+ G +RRHPD+ W R D+ A QR ++ + +KPGG +V Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E + + L + A P Sbjct: 374 YVTCSIFPTEGEAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVP------------G 421 Query: 423 IDGVSSGMDGFFAVALRR 440 + + DGF+ ++ Sbjct: 422 VSSLPLDHDGFYYAVFQK 439 >gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293] gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293] Length = 360 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 165/372 (44%), Gaps = 34/372 (9%) Query: 93 ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144 ++YLD V + A + AVE AKR + ++ A +VN +LR + RE + ++R+A Sbjct: 1 MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196 + P W + + YG E + + + P V D T + A Sbjct: 60 ATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEEAIALLASEGIEAK 119 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 ++ ++ F +G +QD S+ + + VLD CAAPGGKT Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKT 179 Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310 + +V +LD+ ++ ++ +RL L + +D ++ + FD + Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNVETKALDARKVQEHFANETFDKI 239 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+V+++ L+ P E + + + EG ++I P Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA--------T 348 Query: 431 DGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 349 DGFYIACLRKKV 360 >gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca ATCC 29256] gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca ATCC 29256] Length = 419 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L +A L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSIAAV-AEGRNLQDVLAQI--RAAHPELTVQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + ++ + N+ Sbjct: 63 LAQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQYRS-FANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITTALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + E + LPGFAEG+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFAEGLVSVQDFGAQQAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + VTALD+ + RL++++ NLDRL + Sbjct: 239 LLNPKDGERILDACAAPGGKTGHMLELADCHVTALDIDEGRLKRVKDNLDRLGFQTTALA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDA+L D PC+++G RR+PDV W R D K+A Q LL Sbjct: 299 CADAQDLAAWYDGKPFDAILADVPCTASGVARRNPDVKWLRRPTDAAKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + G ++ + CS+ ++++ +QK L EL+ Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDVQLQKFLNRH-ADAELIESRV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418 >gi|167893188|ref|ZP_02480590.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 7894] Length = 420 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG+ VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V L + P ELVP + A + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRALAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|34499073|ref|NP_903288.1| sun protein [Chromobacterium violaceum ATCC 12472] gi|34104923|gb|AAQ61280.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472] Length = 419 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 99/443 (22%), Positives = 167/443 (37%), Gaps = 56/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 ++ + R +L + + L D+ L+ LR L ++ A++ Sbjct: 14 VIGQMTRFDRPADAVLSAYFREH--NKLGSADRHLIAETAFGALRRLIQLRALIAP--EK 69 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + PR R+++ ++ + + + A +R+ K + L Sbjct: 70 ATPR---------RLALVALMKFNKLNVKELSEATSAGEREWLGTVKGKALEDSLE---- 116 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W ERL V A+ +S +DL V E Sbjct: 117 ----------IRAELPQWVIERLGEQEP-AAVEALGQGLMSMAPLDLRVNTLKMKREELL 165 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 +LNA + L + P F G + VQD + + + G Sbjct: 166 DRLNADGIACEATPYSPLGIRLKDKPALSRHELFKSGAFEVQDEGSQLLGLITGARRGEM 225 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI----IEMD 297 V+D CA GGKT + S ++ A DVS++RL + R L E D Sbjct: 226 VVDFCAGAGGKTLLLGAQMASSGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLLSHEND 285 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ + + D + + Q +L VK Sbjct: 286 AKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQSPDSVAELNAKQASILASASRLVKN 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL Q+++ +V+ L LV ++ + + L ++ + P Sbjct: 346 GGRLVYATCSLLPQENQAIVEAFLAEH-ADFRLVKMDEVLAE---QKIPLQCGDYLELKP 401 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + DGFFA L R Sbjct: 402 HL--------HNTDGFFAAVLER 416 >gi|261392374|emb|CAX49914.1| putative ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Neisseria meningitidis 8013] Length = 418 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 167/446 (37%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N ++ + L ++R+ Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCVEL-LQNLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 449 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 94/458 (20%), Positives = 176/458 (38%), Gaps = 44/458 (9%) Query: 9 LVSSHLLSCVMRKRI--SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 + L+ V + S+RD LV A+ ++ L +D Sbjct: 9 EMVLALVEAVRLSERIKPSQDAKRRAFRKYGILG-SKRD-PLVTAVFYGVMKRLGILDLY 66 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR---DKENRHFAKL 123 + ++ + L+ LRV + +I + + K + Sbjct: 67 IRSIVGVNPYIIDPWLRAALRV-LLEIKVYRDPSRRTLRYLRGSVAKLLSSKTHPFVGMY 125 Query: 124 VNSILRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVLAISDACISPLYI 178 I ++ E R ++P W+ ++ G + A L + Sbjct: 126 YARIYDKIINENYVFKPRNEDEELLVKYMLPPWYVRKIIGLLGNVEAEKLFKALDKQLPL 185 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG---------FAEGVWWVQDAS 229 + V L + +R + +I+ PG F +G +Q+ + Sbjct: 186 SVRVNTLKTGVEEVLEILRREVKWVRRSSIVSTIIKFPGPYNFDKSDLFRKGYIVIQEEA 245 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A++ + ++V+D+ AAPGGKT + + + + A DV K+R+++++ L R Sbjct: 246 AAVASLILDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRRT 305 Query: 287 HLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + I D+ +K+ D VL+DAPCSS GTI ++PD+ W + I + Sbjct: 306 GVRIAKIYREDSRKAPEILGEKIADRVLLDAPCSSDGTIMKNPDLRWRLREEKIAELQKL 365 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L G +KPGG +++ CS+ +++E +++K LR E++PLN Y Sbjct: 366 QYEMLEAGWKLLKPGGKLLYCTCSMLLEENEHIIEKFLRKH-RDAEIIPLNKPYDPGFLP 424 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +R P GFF L++ Sbjct: 425 -------GTMRAWPH--------RHETIGFFYALLKKK 447 >gi|53718550|ref|YP_107536.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243] gi|76809740|ref|YP_332539.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei 1710b] gi|126438608|ref|YP_001058021.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 668] gi|126454034|ref|YP_001065255.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 1106a] gi|167718457|ref|ZP_02401693.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei DM98] gi|167814625|ref|ZP_02446305.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 91] gi|167823095|ref|ZP_02454566.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 9] gi|167844657|ref|ZP_02470165.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei B7210] gi|167901641|ref|ZP_02488846.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei NCTC 13177] gi|167909890|ref|ZP_02496981.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 112] gi|217420015|ref|ZP_03451521.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 576] gi|226194442|ref|ZP_03790040.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei Pakistan 9] gi|237811172|ref|YP_002895623.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei MSHR346] gi|242317852|ref|ZP_04816868.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106b] gi|254181494|ref|ZP_04888091.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 1655] gi|254190881|ref|ZP_04897388.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei Pasteur 52237] gi|254196467|ref|ZP_04902891.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei S13] gi|254261593|ref|ZP_04952647.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1710a] gi|52208964|emb|CAH34903.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243] gi|76579193|gb|ABA48668.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei 1710b] gi|126218101|gb|ABN81607.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 668] gi|126227676|gb|ABN91216.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106a] gi|157938556|gb|EDO94226.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei Pasteur 52237] gi|169653210|gb|EDS85903.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei S13] gi|184212032|gb|EDU09075.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 1655] gi|217397319|gb|EEC37335.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 576] gi|225933527|gb|EEH29516.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei Pakistan 9] gi|237506284|gb|ACQ98602.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei MSHR346] gi|242141091|gb|EES27493.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106b] gi|254220282|gb|EET09666.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1710a] Length = 420 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 99/446 (22%), Positives = 166/446 (37%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG+ VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V L + P ELVP + + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|134281167|ref|ZP_01767876.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 305] gi|134247473|gb|EBA47558.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 305] Length = 420 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 99/446 (22%), Positives = 166/446 (37%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPASLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG+ VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V L + P ELVP + + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201] gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC 6E1] gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC 6E1] gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201] gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 360 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 34/372 (9%) Query: 93 ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144 ++YLD V + A + AVE AKR + ++ A +VN +LR + RE + ++R+A Sbjct: 1 MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196 + P W + YG E + + + P V D T + A Sbjct: 60 ATSHPVWLVQEWTAEYGLETAEKMCEVNMLPPVPTARVNVDKITVEEAITLLASEGIEAK 119 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 ++ ++ F +G +QD S+ + + +LD CAAPGGKT Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVILDSCAAPGGKT 179 Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310 + +V +LD+ ++ ++ +RL L + +D ++ + FD + Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLENVETKALDARKVQEHFANETFDKI 239 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSMIQFAILEKIAPLLKQGGRLVYSTCTIEK 299 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+V+++ L+ P E + + + EG ++I P Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYMDEGQVQILPHYFA--------T 348 Query: 431 DGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 349 DGFYIACLRKKV 360 >gi|295396524|ref|ZP_06806684.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium mcbrellneri ATCC 49030] gi|294970642|gb|EFG46557.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium mcbrellneri ATCC 49030] Length = 494 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 96/469 (20%), Positives = 163/469 (34%), Gaps = 41/469 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + N R+++ +L V LL + + +S D + + TLR Sbjct: 36 RPKANPRVIAWEVLRDVDLNDAYANLLLPAKLERTR---MSGPDAAMCTEMTYGTLRARR 92 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR--- 118 DAV++ V + + + ++ +R+ Q+L + VAD+A V V ++ + + Sbjct: 93 FYDAVIEKVSDRPVDQIEAAVLNAMRLGAHQVLAMRVADHAAVSETVGVISKNADTKIAN 152 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI-----------SIIPEWFKERLENF-----YGK 162 A VN++LRR++ + E + P W L Sbjct: 153 RAAGFVNAVLRRITEKSREEWLEELCEGLSDDERLEITTSHPAWIIRSLRQALVANGRNA 212 Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + + +A +P + L+V + + I + + A G Sbjct: 213 EELTQLLEAHNTPARVCLSVLDGTRDQVAQKHGEPTELSPIGVTLTHGDPAHVDAVAAGR 272 Query: 223 WWVQDASAS-----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277 VQD + + LDLCA PGGKT+ L V Sbjct: 273 ARVQDEGSQLVALALVEAEASEDPADPWLDLCAGPGGKTSVLAAHAGTKRVDAVDASAHR 332 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + D D+ + VLVD PCS G +RR P+ W R Sbjct: 333 TELVKDSTRAFDNVQAVNEDGRDFAQANPQTYTRVLVDVPCSGLGALRRRPEARWRRQPS 392 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI QR LL I K GG++ ++ CS ++ VV+ +++ P+ V P Sbjct: 393 DIGALGGVQRDLLRTAIEATKSGGVIAYTTCSPHVAETLMVVEDIVKKQPVTVMDAPEVL 452 Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S +++ P + DG F L++ Sbjct: 453 AQLTGKPAETFESATVASGRVVQLWPHI--------HATDGMFLALLKK 493 >gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens NRL30031/H210] gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens NRL30031/H210] Length = 419 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 118/449 (26%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSVAAV-AEGRNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + + F N+ Sbjct: 63 LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L N Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPVWWVAYLRNHYPKHW-HNITTALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A +P + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIPARALDEYAVMLEEAMPVSRLPGFSDGLVSVQDFGAQRAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + VTALD+ + RL +++ NLDRL + Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQKASLA 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D VK+A Q LL Sbjct: 299 CADAQDLTAWYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + G ++ + CS+ ++++ +QK L EL+ + Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESHV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418 >gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein [Thermococcus kodakarensis KOD1] gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator domain [Thermococcus kodakarensis KOD1] Length = 450 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 97/455 (21%), Positives = 184/455 (40%), Gaps = 38/455 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + L V + +S L+ + A R + + L A V ++ +ID +++ Sbjct: 11 EVVADALMLVEERELSSKHALERVFKKVAGRDREKA-RGLAHAYVFEIEKWRAKIDFIIN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL S + L LLR+ +I + V D V K K + AK VN++ Sbjct: 70 SVLKGSKVEDLDPYLANLLRIGTFEIHFRKVPPALATDSIVRVVKE-KFDFSRAKFVNAL 128 Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + + + ++ ++ P W+ E + N +G + + + + P Sbjct: 129 MHEIEKFDVERALKRLKEKDRIEWLSVRFSHPRWYVEYVINLFGYDEAVRLLLSNNRPQR 188 Query: 178 IDLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + + A+ +++ E + L + EG + +QD Sbjct: 189 YYVRANTLKTDIDSLRDYLEENGVRTALTPVPDVLKVLEYKTPVTRLDWYKEGKFVIQDL 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +++ + +LDL AAPG KT + + ++ A+D S RL +++ Sbjct: 249 ASAYVAHVLSPEPGERLLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMRMKEKAKV 308 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + + D + K+ FD +++DAPCSS+GT R+ P+V W D I K QR Sbjct: 309 LGVKNVRFVHADGQSFRDKEKFDKIILDAPCSSSGTYRQFPEVKWRFDEAKIKKIISVQR 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L ++ GG + +S CS+ + EE V L +N + +D Sbjct: 369 NMLRNAYENLREGGEMTYSTCSIRIDEDEENV------------LFAINRVGLELLDYPF 416 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G++ I D + + + FF L+R Sbjct: 417 SWGDRGFLDI-GDKVFRAWTHRHDCNSFFIAKLKR 450 >gi|114332240|ref|YP_748462.1| Fmu (Sun) domain-containing protein [Nitrosomonas eutropha C91] gi|114309254|gb|ABI60497.1| Fmu (Sun) domain protein [Nitrosomonas eutropha C91] Length = 424 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 91/442 (20%), Positives = 155/442 (35%), Gaps = 55/442 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 + V+ + LL + D + L Q + ++ V LR ++ + Sbjct: 14 AVRKVLPLQAPADVLLRQFFRD--YPQLGQNGRSMIAETVFGILRHRFFLEVLTGKATAR 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 L V + + + L E + + + Sbjct: 72 EL------------VLAYLARFQGMNLRELTPLIREVESKWI--------------QQIK 105 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 Q + PEW +L+ + E +L + P +D+ V E Sbjct: 106 AVKLEEQPQFIRAEFPEWLVGKLQQSWSDEDILRLGQVLQQPAPLDIRVNSLLAKREEVI 165 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + + P F G VQD + I L Sbjct: 166 AVLKQEGIEAQSTPFSPVGIRLTGNPAINRNALFLSGKIEVQDEGSQILGFLLAPKRGEM 225 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CA GGKT L+ S ++ A D+S++RL L+ L R L +D+ Sbjct: 226 VVDFCAGAGGKTLLLGALMHSRGRLYAFDISEKRLNNLKPRLKRSGLSNVHPQHIDSEKD 285 Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D VLVDAPCS GT+RR+PD+ W + + I + Q +L +KP Sbjct: 286 IKLKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESINELQKKQIAILTAAAKLLKP 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL +++++V+++ L P L + I++ Sbjct: 346 GGRLVYATCSLLPEENQQVIERFLADHPQFSILNCGELLAQQKINLPDT----------- 394 Query: 418 DMLEKIDGVSSGMDGFFAVALR 439 ++ + DGFFA L Sbjct: 395 GEFLQLSPLYHNTDGFFAAVLE 416 >gi|288918235|ref|ZP_06412590.1| Fmu (Sun) domain protein [Frankia sp. EUN1f] gi|288350405|gb|EFC84627.1| Fmu (Sun) domain protein [Frankia sp. EUN1f] Length = 501 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 99/497 (19%), Positives = 159/497 (31%), Gaps = 74/497 (14%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL++ +L V + +L R LS RD+ + +LR +D Sbjct: 14 PARLLAWEVLRAVDERGAYANLMLPALLNR---RRLSPRDRGFATELTYGSLRAQGTLDG 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF----- 120 VL V + ++ LR+ Q+L V A V VE + R Sbjct: 71 VLGTVTSRPVDTVDPPVRDALRLGTYQLLSTRVPARAAVASTVELVRATCGERPVRFANA 130 Query: 121 -----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLA 167 ++L ++ + ++ +S P W E + + A Sbjct: 131 VLRRVAARVEETAGDVAVLLSAPDVSVDPVGHLSVVSAHPRWIVEVVLEALDGDVAGAQA 190 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLP--------TGGIRLKELPESIVSLPGFA 219 A + L + + + +L Sbjct: 191 ALAANDERPGVHLVARPGRIGADELVAQAAAAGLQAHRGACSPYAVHLDGGDPGALTAVV 250 Query: 220 EGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTA------ 268 G VQD + + + + +DLCA PGGK A L A + Sbjct: 251 AGDAAVQDEGSQLMALALAAVPMVGRSSGLTVDLCAGPGGKAALLAAVLATEQSPGAGLL 310 Query: 269 ------------------------LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-P 303 L + R A ++ D Sbjct: 311 PGGGPPAGAAESLPGGGAAAGARLLALEPRAARAGLVAASLAGFPAAHVVRADGRVPPVR 370 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 D VLVD PCS G +RR P+ W R DI A QR+LL+ + V+PGG+V + Sbjct: 371 PGTADRVLVDVPCSGLGALRRRPEARWRRTPADIAVLAPLQRQLLVSALDLVRPGGVVAY 430 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 CS ++++ EVV V+ V L S + + A +L ++++ P + Sbjct: 431 VTCSPHREETSEVVSAVVGQRADVVTLDARRSPIFADLP-ADSLGSGPFVQLWPHL---- 485 Query: 424 DGVSSGMDGFFAVALRR 440 G D F LRR Sbjct: 486 ----HGTDAMFLALLRR 498 >gi|17544794|ref|NP_518196.1| RNA methyltransferase (SUN protein) [Ralstonia solanacearum GMI1000] gi|17427083|emb|CAD13603.1| putative rna methyltransferase (sun protein) [Ralstonia solanacearum GMI1000] Length = 441 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 163/438 (37%), Gaps = 36/438 (8%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ +L +D + V+ + R+L D ++ ++ Sbjct: 22 LRQGTALPQAIDAAC-----PGQPGATRGAVQDLAYRATRWLGSADWLIRTLIPRPPAEG 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + VVD V A D + H ++N +LRR RE+ Sbjct: 77 AA---NLLRVALAQLLDTPQPYAPFTVVDQTVRAASADPKLAHAKGMINGVLRRFLREQA 133 Query: 137 ELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 +L + P W+ + Y + ++ P + + V+ + Sbjct: 134 DLTAAMQADPVAAINYPAWWIGAVREAYPEAWQAILAAGNRRPPMVLRVNPSRVPVEAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + LPGFAEG VQDA A + L VL Sbjct: 194 ARLAEVGIEAERIGAQAVRLARAMPVGDLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT + G V AL+ R ++ NL RL A + Sbjct: 254 DACAAPGGKTGHLLELADGLDVVALESDAARAARIGENLARLGQTATVCVGDAAKPDAWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +LVD PCS+ G +RRHPD+ W R D+ A QR ++ + +KPGG +V Sbjct: 314 DGRPFDRILVDVPCSAAGIVRRHPDIRWLRRPADLPALAALQRDIVSALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E + + L + A P Sbjct: 374 YVTCSIFPTEGEAQARWFESRLQDAIRLHAPGQLLPAMPEAAGGFVP------------G 421 Query: 423 IDGVSSGMDGFFAVALRR 440 + + DGF+ ++ Sbjct: 422 VSSLPLDHDGFYYAVFQK 439 >gi|299133664|ref|ZP_07026858.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2] gi|298591500|gb|EFI51701.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2] Length = 433 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 154/459 (33%), Gaps = 47/459 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L + R L F D+ + +V TLR Sbjct: 1 MTP--AARLSAAIEVLEAIDTNRSPAQSALKEWGTAHRFAG--SGDRAAIAGLVFDTLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 V+D L LR+ + LD A + A Sbjct: 57 RASGAYVMDEDTPRG------RLLGALRL---E-RGLDTDAIAALCSGERFAPAPLSEAE 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + L L PEW L +G +RV A S +D Sbjct: 107 RSALDTRTLDNAPP---------DIAGDYPEWLDSHLAEAFGDDRVREA-AAMASRAPLD 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227 L V L A+ + + F +G VQD Sbjct: 157 LRVNTLRSKPEKALAALSHLGAQPTPWSPLGLRIVLGADARNPGVHAEEVFIKGGVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALFAQAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDRDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ ++ + K D V+VDAPC+ TGT RR+PD W + Sbjct: 277 RAGIHNAEVRGPKGAENPLSDIKATADLVVVDAPCTGTGTWRRNPDAKWRMRPGALEVRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + + VKPGG + + CS+ Q++ + +VP Sbjct: 337 KDQAEVLERAAALVKPGGRIAYITCSVLPQENGGQIAAFTARH-GDFAVVPPAEVIGALG 395 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D A A +R +P L + + +G DGFF LR+ Sbjct: 396 DRAEAFGKA--VRSSPQGLL-MTPLRTGTDGFFVSILRK 431 >gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava NJ9703] gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava NJ9703] Length = 419 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 6 AQKLAADSVAAV-AEGCNLQDVLAEIRAAHPQ--LTAQENGALQDIAYGCQRYLGSLKYM 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + + F N+ Sbjct: 63 LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 119 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 120 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITTALQSHPPMTLRV 178 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + + E + LPGF++G+ VQD A Sbjct: 179 NRRHGNAESYLEKLAAEGIAARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGAQRAAY 238 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + VTALD+ + RL +++ NLDRL + Sbjct: 239 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQKASLT 298 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D VK+A Q LL Sbjct: 299 CADAQDLAAWYDGKTFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + G ++ + CS+ ++++ +QK L EL+ + Sbjct: 359 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESHV---------------- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 402 ---LLPNKHQ---------DGFYYALIKK 418 >gi|256392286|ref|YP_003113850.1| Fmu (Sun) domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256358512|gb|ACU72009.1| Fmu (Sun) domain protein [Catenulispora acidiphila DSM 44928] Length = 493 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 102/509 (20%), Positives = 173/509 (33%), Gaps = 86/509 (16%) Query: 1 MKSGM------NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54 M AR + +L V + L R LS RD + Sbjct: 1 MAPRTSTSTADQARAAALEVLEAVRTRDAYANL---LLPRLLRDRGLSGRDAAFTTELSY 57 Query: 55 VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 TLR L DA++ + L + LR+ Q+L +DV +A V V+ + Sbjct: 58 GTLRGLGTYDAIIAACVDRDLDAVDPVVLDALRIGAHQLLAMDVPPHAAVSTTVDLVRSV 117 Query: 115 KENRHFAKLVNSILRRVSREKIELLQRI-------------AGISIIPEWFKERLEN--- 158 N ++ N+ILRRV + ++ + + P W + Sbjct: 118 -SNEGASRFANAILRRVGQGDLQEWIKRIAPNAQDDPEGFLSVSRSHPRWIVSAFWDSLQ 176 Query: 159 -----FYGKERVLAISDACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPES 211 + + + DA + + L + + L A+ Sbjct: 177 AHRGAQRAHQDIGELLDADNARPGVTLVTRPGLAQVGELTDLGALAARYSPYAAYLAGGD 236 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLN----NLSVLDLCAAPGGKTAQLIV----SG 263 +L +G VQD + + + LD+CA PGGK A L G Sbjct: 237 PGALAPVRDGRAGVQDEGSQLVATALALAPLEGRDEQWLDMCAGPGGKAALLAGLALERG 296 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE-------------------------------D 292 A + A +++ R E +R L Sbjct: 297 ASLLANEIAPHRAELVRRALRGYGDRVVGTADTHTAEVDENADADTDTDATDAVRTGSLQ 356 Query: 293 IIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 +I D FD V++DAPC+ G +RR P+ W R +D+ + QR+LL Sbjct: 357 VIAADGIRAPWQPGSFDRVMLDAPCTGLGALRRRPESRWRRTPEDLERLTRVQRRLLSSA 416 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + V+ GG+V + CS +++ +VV++V+++ VE V D+ Sbjct: 417 LDSVRTGGLVAYVTCSPHLEETRDVVRQVVKARR-DVERVDARPLLPGVPDLGGGPD--- 472 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P + G D + LRR Sbjct: 473 -VQLWPHL--------HGTDAMYLALLRR 492 >gi|119900274|ref|YP_935487.1| Sun protein [Azoarcus sp. BH72] gi|119672687|emb|CAL96601.1| Sun protein [Azoarcus sp. BH72] Length = 426 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 114/446 (25%), Positives = 184/446 (41%), Gaps = 47/446 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ L+ V+ +LT + D + VR + TLR R D VLD + Sbjct: 14 AAELVGTVLEGG-NLTAAFEARLADHPAW--PDATRGAVRDLAWSTLREYGRGDVVLDRL 70 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L S P + LL V++ ++ + VVD AV A +VN +LR Sbjct: 71 LKSPPP---AYIHALLLVALHRLEQRPEQAHTVVDQAVSAAAAAM--PGLKGMVNGVLRN 125 Query: 131 VSREKIELLQRIAG----ISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKFD 185 R+ E+ + P W+ RL + +A + P+ + + + Sbjct: 126 SLRQHEEVAAWRSASEVARMRHPAWWIARLRRQWPDAWPAVAAAGNLPPPMALRVNRRTA 185 Query: 186 I-----ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 A L E+P ++V LPGFAEG VQDA A +L Sbjct: 186 RRDDVLAELASAGIGARPCDEDGVLLEVPCAVVRLPGFAEGRVSVQDAGAQYAARLLDPH 245 Query: 241 NNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + VLD CAAPGGK A L + ++ AL+++ R ++ NL RL L A + D Sbjct: 246 DGDRVLDACAAPGGKAAHLLERADVQLLALELAPERAARIGANLQRLGLEA-SVKVGDCR 304 Query: 300 ---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FD +L D PCS++G +RRHPD+ W R +DI A Q ++L ++ Sbjct: 305 AVDSWWDGTPFDRILADVPCSASGVVRRHPDIKWLRRDEDIAGFAAQQAEILDALWRTLR 364 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG ++++ CS+ ++++ V L + + ++ + + + Sbjct: 365 PGGTMLYATCSVFEEENAGQVAAFLARHADALSV---------------SIDGQPHLCLL 409 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 PD DGFF LR+ Sbjct: 410 PDA---------DHDGFFYALLRKAA 426 >gi|226938995|ref|YP_002794066.1| sun protein [Laribacter hongkongensis HLHK9] gi|226713919|gb|ACO73057.1| sun protein [Laribacter hongkongensis HLHK9] Length = 412 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 117/446 (26%), Positives = 183/446 (41%), Gaps = 54/446 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L+++ +L + +LT ++ E + + + + +LR R+ LD Sbjct: 6 LLAARILDATL-SGHNLTDVMSSEAAHITGDR-----RAQLLDLTHGSLRRYGRLRVKLD 59 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L L + +LL V++ Q+ A YA+VD AV A LVN++L Sbjct: 60 HLLERPLT--DPVVDRLLIVALYQLEATRAAPYAIVDHAVRAASE--AAPRLKGLVNAVL 115 Query: 129 RRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 R R + EL + PEW+ + Y ++ + A + L V Sbjct: 116 RNAQRRQDELEQLLQRDTVAHWNHPEWWIAAVRRAYPRDWKAVLG-ASNQHPPMTLRVNT 174 Query: 185 DIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDASASIPVQLF 237 A LN + L E P + LPGF EG+ VQDA A + L Sbjct: 175 RRVEPAEYLNELASHGHAATLLEDAAIKLVSPCPVSQLPGFFEGLCSVQDAGAQLATGLL 234 Query: 238 GTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDII 294 + + VLD CAAPGGKT L +TALD RRL ++ NL+RL L+A Sbjct: 235 DVADGMRVLDACAAPGGKTGHLLEARTLDLTALDADARRLARVSQNLERLGLHARVVRGD 294 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + + FD +L D PCS++G +RRHPD+ WTR + D+ + A QR++ Sbjct: 295 AATPAAWWDGRPFDRILADVPCSASGVVRRHPDIKWTRRSSDLNQFAQTQRRIADALWPL 354 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V GG ++++ CS+ ++ E + L E ++ Sbjct: 355 VASGGKMLYATCSIFPTENREQIDAFLARHADAAL--------------------ERDLQ 394 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + PD DGF+ L R Sbjct: 395 LVPDDT---------HDGFYYAVLVR 411 >gi|197124464|ref|YP_002136415.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K] gi|196174313|gb|ACG75286.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K] Length = 455 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 122/458 (26%), Positives = 177/458 (38%), Gaps = 44/458 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ A L R+ L +V TLR +DA Sbjct: 12 ARGIAFDVLRRVEEGGAYASR--ALDAALGAAGALDPREAGLATELVYGTLRRALALDAA 69 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L L + + LR+ Q+L L +A V V AK R A VN+ Sbjct: 70 LAPHSRRPLAELDPAARVALRLGAYQLLVLGTPAHAAVGETVALAKAVDHGR-AAGYVNA 128 Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR +SR +A +P W E + G LA++ A +P Sbjct: 129 VLRSLSRAARFPDPPALEADPAGHVAAAEALPRWVAEEWVGWLGAGEALALARAMNAPAP 188 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLP----GFAEGVWWVQDA 228 + + D E + A L S+ L G V Sbjct: 189 LCVR-TPDREALLARARAAGLAAAPAARAPGGVVLTGASVGELARAAGGVPFQVQDEAAQ 247 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 ++ VLD CAAPGGK L GA+V A+++ R+ ++L R Sbjct: 248 LVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAIELHPRKADELAREAAR 307 Query: 286 LHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L A ++ DA P FDAVLVDAPC+ GT+RRHP++ R D+ + A Sbjct: 308 RGLAAVRVVCADAGKPIPGLEPGSFDAVLVDAPCAGLGTLRRHPELKLRRAPGDLPRMAA 367 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QRK+ L + +PG VV+S CSL + + EVV+ +L P + + Sbjct: 368 LQRKIALNAARYARPGAPVVYSICSLSRAEGPEVVETLL---GEGFRRAPPPAGFP---- 420 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A L G + P G DGF+A L R Sbjct: 421 -ADVLDARGDLLTLPS--------RHGTDGFYAARLVR 449 >gi|218768368|ref|YP_002342880.1| SUN-family protein [Neisseria meningitidis Z2491] gi|121052376|emb|CAM08708.1| SUN-family protein [Neisseria meningitidis Z2491] gi|319410614|emb|CBY90983.1| putative ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) [Neisseria meningitidis WUE 2594] Length = 418 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 167/446 (37%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNVHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLHTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418 >gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BDRD-ST26] gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BDRD-ST26] Length = 360 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 165/372 (44%), Gaps = 34/372 (9%) Query: 93 ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144 ++YLD V + A + AVE AKR + ++ A +VN +LR + RE + ++R+A Sbjct: 1 MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA--------HKLNAV 196 + P W + + YG E + + + P V D T + A Sbjct: 60 ATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPTARVNVDKITVEGAIALLASEGIEAK 119 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 ++ ++ F +G +QD S+ + + VLD CAAPGGKT Sbjct: 120 RGDLSDDAIQIEKGNVAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKT 179 Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310 + +V +LD+ ++ ++ +RL L + +D ++ + FD + Sbjct: 180 THIAERLKGTGQVMSLDLHAHKVRLIKQQAERLGLGNVETKALDARKVQEHFANETFDKI 239 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+V+++ L+ P E + + + EG ++I P Sbjct: 300 IENEQVIERFLQEHP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA--------T 348 Query: 431 DGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 349 DGFYIACLRKKV 360 >gi|83719688|ref|YP_441329.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis E264] gi|167618178|ref|ZP_02386809.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis Bt4] gi|257139997|ref|ZP_05588259.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis E264] gi|83653513|gb|ABC37576.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis E264] Length = 420 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 101/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLADVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R L+ + + + + V V A+ + S+ RV Sbjct: 72 PARR-------LVLLGL-----MQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDEVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V + L + P LVP + + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|53726232|ref|YP_103803.1| NOL1/NOP2/sun family protein [Burkholderia mallei ATCC 23344] gi|67641262|ref|ZP_00440044.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia mallei GB8 horse 4] gi|121598599|ref|YP_993952.1| rRNA small subunit methyltransferase B [Burkholderia mallei SAVP1] gi|124385695|ref|YP_001027017.1| rRNA small subunit methyltransferase B [Burkholderia mallei NCTC 10229] gi|126449006|ref|YP_001081640.1| rRNA small subunit methyltransferase B [Burkholderia mallei NCTC 10247] gi|166998903|ref|ZP_02264755.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia mallei PRL-20] gi|254175548|ref|ZP_04882208.1| rRNA small subunit methyltransferase B [Burkholderia mallei ATCC 10399] gi|254202506|ref|ZP_04908869.1| rRNA small subunit methyltransferase B [Burkholderia mallei FMH] gi|254207841|ref|ZP_04914191.1| rRNA small subunit methyltransferase B [Burkholderia mallei JHU] gi|254356264|ref|ZP_04972540.1| rRNA small subunit methyltransferase B [Burkholderia mallei 2002721280] gi|52429655|gb|AAU50248.1| NOL1/NOP2/sun family protein [Burkholderia mallei ATCC 23344] gi|121227409|gb|ABM49927.1| rRNA small subunit methyltransferase B [Burkholderia mallei SAVP1] gi|124293715|gb|ABN02984.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia mallei NCTC 10229] gi|126241876|gb|ABO04969.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia mallei NCTC 10247] gi|147746753|gb|EDK53830.1| rRNA small subunit methyltransferase B [Burkholderia mallei FMH] gi|147751735|gb|EDK58802.1| rRNA small subunit methyltransferase B [Burkholderia mallei JHU] gi|148025261|gb|EDK83415.1| rRNA small subunit methyltransferase B [Burkholderia mallei 2002721280] gi|160696592|gb|EDP86562.1| rRNA small subunit methyltransferase B [Burkholderia mallei ATCC 10399] gi|238522161|gb|EEP85607.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia mallei GB8 horse 4] gi|243064983|gb|EES47169.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia mallei PRL-20] Length = 420 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 167/446 (37%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G +V P F EG+ VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALAKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V L + P ELVP + + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|330818069|ref|YP_004361774.1| NOL1/NOP2/sun family protein [Burkholderia gladioli BSR3] gi|327370462|gb|AEA61818.1| NOL1/NOP2/sun family protein [Burkholderia gladioli BSR3] Length = 464 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 168/443 (37%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL V++ + L ++ ++ V LR + + + Sbjct: 14 LLGDVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGT 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + A + + V +A+ + S+ RV Sbjct: 72 PARRLT-------LLGL-----MQTAGRSALKPHVSEAEWSWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + +P+W + L + + + + A P +DL V + Sbjct: 118 -----------RTNLPDWIHQALSQRFDADGLAQFAAAVNYPAPLDLRVNVQKATRDQVL 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G ++ P F +G+ VQD + + L Sbjct: 167 DALKASGIEAGETPFAPNGVRVIGKPALTKLSIFQDGLIEVQDEGSQLLCSLMAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT + S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + D I + A Q +L VKP Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRDSIEELAPKQGSILASAARLVKP 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V + L + P LVP N + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVVQFLAAHP-DFVLVPANKVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|207727563|ref|YP_002255957.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2] gi|206590800|emb|CAQ56412.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2] Length = 418 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 103/411 (25%), Positives = 159/411 (38%), Gaps = 29/411 (7%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA--DYAV 103 + V+ + T R+L D ++ ++ LLRV++AQ+L + V Sbjct: 19 RGAVQDLAYRTTRWLGSADWLIRTLIPRPPAEGTA---NLLRVALAQLLDTPPPYAPFTV 75 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS----IIPEWFKERLENF 159 VD AV A D + H +VN +LRR RE+ +L+ + P W+ + Sbjct: 76 VDQAVRAASADPKLAHAKGMVNGVLRRFLREQGDLVAAMQADPVAATNYPVWWINAVREA 135 Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 Y + ++ P + + V + A + Sbjct: 136 YPEVWQAILAAGNRRPPMVLRVNPRRVPVDAYLARLAEGGIEAERIGAQAVRLARAVPVG 195 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDV 271 LPGFAEG VQDA A + L VLD CAAPGGKT + G + AL+ Sbjct: 196 DLPGFAEGDVSVQDAGAQLAAALLDVAPGQRVLDACAAPGGKTGHLLELADGLDLVALES 255 Query: 272 SKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 R E++ NL RL A + + FD +LVD PCS+ G +RRHPD+ Sbjct: 256 DGARAERIGENLARLGQIATVCVGDAAKPDAWWDGRPFDRILVDVPCSAAGIVRRHPDIR 315 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R D+ A QR ++ + +KPGG +V+ CS+ + E V+ + Sbjct: 316 WLRRPADLPALAVLQRDIVSALWACLKPGGKLVYVTCSIFPTEGEAQVRWFESRLQDAIR 375 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + A + P DGF+ ++ Sbjct: 376 LHAPGQLLPAMPEAAPVGGFVPGVSSLP----------LDHDGFYYAVFQK 416 >gi|91789649|ref|YP_550601.1| Fmu (Sun) [Polaromonas sp. JS666] gi|91698874|gb|ABE45703.1| Fmu (Sun) [Polaromonas sp. JS666] Length = 417 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 155/450 (34%), Gaps = 65/450 (14%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL V++ ++ + + L R++ V + LR A L Sbjct: 12 ELLKQVLKFEHPADMVVSRYFREMR---LGPRERATVAETIYGVLRKKNLY-AYLAQHGS 67 Query: 73 SSLPRKKYSL-----QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 R+ L + L ++ + A+ Sbjct: 68 GPPERRLAILGFAAERDFLLSALTE------------QEKDWLAR--------------- 100 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 + +P+W E L+ G + + ++ +P +DL V E Sbjct: 101 ----CDQVKPSDLMELHRHNLPQWLVEPLKAQLGDDFW-PLVESLNAPAGLDLRVNTLKE 155 Query: 188 TWAHKLNAVMLP--------TGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFG 238 A + L+ + + + L F G VQD + + L Sbjct: 156 KRAEVQKELGKHAIKTVATPYSPWGLRLVDKPQLGKLDAFTRGAIEVQDEGSQLLALLLD 215 Query: 239 TLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--- 292 V+D CA GGK + + ++ A D S RL+ L+ L R L Sbjct: 216 AKRGEMVVDFCAGAGGKTLAIGATMRNTGRLYAFDTSGHRLDALKPRLARSGLSNVHPVA 275 Query: 293 -IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 E D D VLVDAPCS GT+RR+PD+ W ++ I + Q +L Sbjct: 276 IAHERDDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQNPKAIEELTAKQAAILQSA 335 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +KPGG +V++ CS+ ++++E + + ++ L ++ A L Sbjct: 336 ARLLKPGGRLVYATCSILREENEAIAEAFSAANKEFNALEVAPLLTHLGVEGAERLCRGP 395 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R+ P DGFFA ++L Sbjct: 396 YLRLWP--------YLHQTDGFFAAVWQKL 417 >gi|298368970|ref|ZP_06980288.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral taxon 014 str. F0314] gi|298282973|gb|EFI24460.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral taxon 014 str. F0314] Length = 418 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 87/445 (19%), Positives = 163/445 (36%), Gaps = 53/445 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + VL Sbjct: 10 AKVLAEMLTFKQPADAVLSGYFREHK--KLGRQDRHKIAETAFAALRHYQK----ISTVL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLSSL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + KE +LA + +D+ V + Sbjct: 105 KARKTEFSDDLHTAAELPQWLVEQLQKHFSKEEILAFGRSTNQAAPLDIRVNTLKGRRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDSRIARLTGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETVAKLLEQQHSILDAAAKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P L ID+ ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENEMQVERFLEEHPEYELLDCAELLAGLKIDLNTG----KYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQR 417 >gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP] gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP] Length = 451 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 188/454 (41%), Gaps = 36/454 (7%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + +L+ + + +S L+ + + + + + L A V ++ +ID +++ Sbjct: 11 ELIADILTLIDERELSSKNALERVFKRVSGKDREKA-RGLAHAYVFEIEKWRKKIDFIVN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120 VL S + + L L+R+ V ++ + V VV + AK N Sbjct: 70 SVLKGSKIEDLELYLANLIRIGVFEMKFKGVNPAIATDSVVRVVKEKYDLAKAKFVNALL 129 Query: 121 AKL--VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 ++ N ++ + ++ ++ P W+ E G + + + + Sbjct: 130 REVENFNLEKALKKLKEKDRIEYLSVKFSHPRWYVEYAIELLGYDDAIRLLLSNNRAQRY 189 Query: 179 DLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V + + + N A +++ E I L + +G + +QD + Sbjct: 190 YVRVNPIKTDIDSLADYLEEHNVRVARTPVDDVLKILEYKTPITRLEWYKQGYFVIQDLA 249 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + G +LDL AAPG KT + + + ++ A+D S RL K+R + L Sbjct: 250 SAYVAHVLGPEKGERILDLAAAPGSKTFHVAHLMENTGEIIAVDYSLERLNKMREKMKIL 309 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ D + K+ FD +++DAPCSS+GT R+ P+V W D I K Q+ Sbjct: 310 GVRNVKLVHADGMKFKEKEEFDRIILDAPCSSSGTYRQFPEVKWRFDERKIKKVIQVQKA 369 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L ++ GG + +S CS+ ++EE ++ + + I ELV ++ + + + Sbjct: 370 MLRNAYRNLRIGGEMTYSTCSIRIDENEENIKYAM--NKIGFELVDYPFSWGERGFLEIG 427 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + R + + FF LR+ Sbjct: 428 ---DKVFRAWTHLHDCNS--------FFIAKLRK 450 >gi|170693574|ref|ZP_02884732.1| Fmu (Sun) domain protein [Burkholderia graminis C4D1M] gi|170141356|gb|EDT09526.1| Fmu (Sun) domain protein [Burkholderia graminis C4D1M] Length = 419 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 94/443 (21%), Positives = 155/443 (34%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V+R + L ++ ++ V LR + + S Sbjct: 14 LLAEVLRLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGAGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F S Sbjct: 72 PARRMA-------LLGLMQ------------------TAGRSALKPFVSDSESRWLEHVA 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L + + ++ A P +DL + Sbjct: 107 MIDPESLPLRIRLNLPDWIYQALAKRFEAAELAQLAAALNYPAPLDLRANPIKASRDDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + L+ + G + L F +G VQD + + L Sbjct: 167 NALSKAGIEAGATPFAPFGVRVVGKPPLTKLDAFQQGWLEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VVQ+ L P + + ID+ M ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHPDFALVPAREVLAEQRIDLEMGD----YLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|21233175|ref|NP_639092.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|46396948|sp|Q8P4G1|RSMB_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase B; AltName: Full=16S rRNA m5C967 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmB gi|21115024|gb|AAM43004.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 437 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 184/437 (42%), Gaps = 39/437 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V + SL L + RD+ LV AI LR P D L L LP Sbjct: 24 VFDQGRSLKAELTAALPGVS----DPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPP 79 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + L+ LL AQ+ L + +A + VE + R A +VN++LRR RE Sbjct: 80 RDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AGMVNAVLRRAQREGFP 138 Query: 138 LLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT-VKFDIETWAHKLNA 195 + A + P W +++L + + + + A ++P+++ + + + +L Sbjct: 139 AV---ADDAGWPSWLRKQLRADWGDQAEAIFVESARMAPMWLRVPRARVSPAEYVARLAE 195 Query: 196 VMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + + + LPGFA+G VQD SA VLD C Sbjct: 196 QGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQDGSAQQVADALALAPAARVLDAC 255 Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----DIIEMDAFDYCP 303 AAPGGK A ++TALDV RRLE++R + R D + Sbjct: 256 AAPGGKAAHLLERHPQLQLTALDVDARRLERVRQTVQRTAPDRTVRLHPADAADTAAWWD 315 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL+DAPCS+TG +RR PDVL R DDI Q +LL ++PGG +++ Sbjct: 316 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARLLEACWRTLRPGGQLLY 375 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 + CSL K++++ ++ L+ + + PL + + + + Sbjct: 376 TTCSLLKRENQTQIEAFLQRT-ADAQAQPLGAQFGHAAGAG----------------RQR 418 Query: 424 DGVSSGMDGFFAVALRR 440 DGFF L + Sbjct: 419 FPGEQQCDGFFYALLLK 435 >gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797] gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797] Length = 477 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 101/425 (23%), Positives = 170/425 (40%), Gaps = 49/425 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ LL R ++ + LS D L I +R +D + Sbjct: 33 ARQLAFFLLEEYRRTDQFISDSMQQWERRI---DLSSADWRLAMEISIGVVRRQLTLDTI 89 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ L + + L LL++ Q++ LD + D+A V VE A + + R + K+VN Sbjct: 90 IESQLTRPREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGKLQRVR-WKKMVN 148 Query: 126 SILRR--------------------------------VSREKIELLQRIAGISIIPEWFK 153 +ILR + ++ P Sbjct: 149 AILRSISRLTADDIATEPQSNTIPLSADRYRSFSIGLFPNPIADPAGYLSKAFSFPLPVI 208 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPTGGIRLKELPE 210 + ++ + ++ + L + + E +L A + + Sbjct: 209 RDWLTRFSVQQTMQMAQWFNQRNNLYLRINALQTGREQLLEELQAEGIQVSPGDEPQAIR 268 Query: 211 -----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 ++ +L GF+ G + +QD SA L +V D+CAAPG KT L + + Sbjct: 269 LEEPVAMENLVGFSAGKFTIQDQSAMAAGNLLNPQPEETVWDMCAAPGTKTTHLAELMYN 328 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAPCSSTGT 321 + A DVS RLEK+ N RL L + + K FDA+LVDAPCS++G Sbjct: 329 RGTLIATDVSCDRLEKIEQNASRLGLTCIETHLVNQPDEIWSTKQFDAILVDAPCSNSGV 388 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + P+ W D + + QR LL Q +K G +V+S CS D +++E+++Q VL Sbjct: 389 LGKRPEARWRLDEVSLKELNQIQRDLLEQAFQHLKSSGRLVYSTCSFDPRENEDLLQDVL 448 Query: 382 RSSPI 386 R P Sbjct: 449 RDHPE 453 >gi|255066507|ref|ZP_05318362.1| methyltransferase, RsmB/NOP family [Neisseria sicca ATCC 29256] gi|255049387|gb|EET44851.1| methyltransferase, RsmB/NOP family [Neisseria sicca ATCC 29256] Length = 419 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 162/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + L ++D+ + LR +I AVL Sbjct: 10 AKVLADMLTFKQPADAVLSAYFRKHK--KLGRQDRHEIAETAFAALRHYQKISAVL---- 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLSSL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + E +LA + +D+ V + Sbjct: 105 KARKTEFSDDLHTAAELPQWLVEQLQKHFSDEEILAFGRSTNQAAPLDIRVNTLKGRRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDSRIARLTGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETVAKLLEQQHSILDAAAKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L+ P ID+ ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENEMQVERFLKEHPEYELFDCAELLAALKIDLNTG----KYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|288932240|ref|YP_003436300.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642] gi|288894488|gb|ADC66025.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642] Length = 446 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 107/451 (23%), Positives = 184/451 (40%), Gaps = 37/451 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ +L + ++ IS LL + + + + + V A V + ID +L+ Sbjct: 15 EIAAEILEKLDKEVISEKELLRRFF---LGKNVDYKIRGAVHAYVMEVSKRRNVIDFILE 71 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA------ 121 L L K ++ LLR++ +I + V D AV AK+ + + Sbjct: 72 KALKPKKLEDVKPFVRNLLRIATYEIFFKKVPPALATDCAVRIAKKRFGIKAASFVNAIL 131 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 + + + EK+ + +A PEW+ + E + L I++ + T Sbjct: 132 RKAERVDLKKEMEKLSRTKYLALKYFHPEWYVKMAEKLGIEVEELLIANLENTIYIRVNT 191 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIV--SLPGFAEGV---WWVQDASASIPVQL 236 +K E L + L E+ + + P + +G + +QD ++ + + Sbjct: 192 LKTSEENLRRYLEKNDVIVEETFLPEVFKVVSYDKPPAYLDGHNELFVIQDLASCLVSRT 251 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 V DLCAAPG KT+ + + + K+ A+D SK RLE++R L++L + I Sbjct: 252 LNPEPGDVVADLCAAPGSKTSHMAALMENKGKIIAVDNSKERLERMRARLNKLGVENVKI 311 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + DA + D VL+D PCSSTG++R +P V W D K+ QRK+L Sbjct: 312 LLGDASKIELEA--DKVLLDPPCSSTGSVRNYPSVKWRYDPRLFWKTVELQRKMLKNAS- 368 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVV---QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 K G +V+S CS+ +++EE V K L+ + E Sbjct: 369 --KIGDEIVYSTCSITFEENEENVLFASKFLKVEDAY---IGFGDKGISRYGKKRFPYAE 423 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R P GFF LRR Sbjct: 424 LVVRTYPH--------KHDTAGFFISKLRRK 446 >gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102] gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102] Length = 417 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 51/449 (11%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V + +L +L L+ ++ ++ I R+L + + Sbjct: 4 AQKLAADSVAAV-AEGRNLQDVLAEIRVAHPQ--LTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + + F N+ Sbjct: 61 LGQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 ILRRFLRERDKLAASCKKDDVAKHNLPLWWVAYLKNRYPKHW-HNITTALQSHPPMTLRV 176 Query: 183 ---KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + E++ KL A + + E + LPGF++G+ VQD A Sbjct: 177 NRRHGNAESYLEKLAAEGILARALDEYAVMLEEAVPVSRLPGFSDGLVSVQDFGAQRAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + +LD CAAPGGKT ++ + VTALD+ + RL +++ NLDRL + Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDEGRLNRVKSNLDRLGFQTASLA 296 Query: 295 EMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA D + K FDAVL D PC+++G RR+PDV W R D VK+A Q LL Sbjct: 297 CADAQDLAAWYDGKAFDAVLADVPCTASGVARRNPDVKWLRRPTDAVKTARQQEALLDAL 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + G ++ + CS+ ++++ +QK L EL+ + Sbjct: 357 WQTLTKNGRMLLATCSVFVEENDGQLQKFLNRH-ADAELIESHV---------------- 399 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ + DGF+ +++ Sbjct: 400 ---LLPNKHQ---------DGFYYALIKK 416 >gi|66770115|ref|YP_244877.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004] gi|66575447|gb|AAY50857.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004] Length = 437 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 184/437 (42%), Gaps = 39/437 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V + SL L + RD+ LV AI LR P D L L LP Sbjct: 24 VFDQGRSLKAELTAALPGVS----DPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPP 79 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + L+ LL AQ+ L + +A + VE + R A +VN++LRR RE Sbjct: 80 RDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AGMVNAVLRRAQREGFP 138 Query: 138 LLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT-VKFDIETWAHKLNA 195 + A + P W +++L + + + + A ++P+++ + + + +L Sbjct: 139 AV---ADDAGWPSWLRKQLRADWGDQAEAIFVESARMAPMWLRVPRARVSPAEYVARLAE 195 Query: 196 VMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + + + LPGFA+G VQD SA VLD C Sbjct: 196 QGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQDGSAQQVADALALAPAARVLDAC 255 Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----DIIEMDAFDYCP 303 AAPGGK A ++TALDV RRLE++R + R D + Sbjct: 256 AAPGGKAAHLLERHPQLQLTALDVDARRLERVRQTVQRTAPDRTVRLHAADAADTAAWWD 315 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL+DAPCS+TG +RR PDVL R DDI Q +LL ++PGG +++ Sbjct: 316 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARLLEACWRTLRPGGQLLY 375 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 + CSL K++++ ++ L+ + + PL + + + + Sbjct: 376 TTCSLLKRENQTQIEAFLQRT-ADAQAQPLGAQFGHAAGAG----------------RQR 418 Query: 424 DGVSSGMDGFFAVALRR 440 DGFF L + Sbjct: 419 FPGEQQCDGFFYALLLK 435 >gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae ATCC 23330] Length = 418 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 110/447 (24%), Positives = 187/447 (41%), Gaps = 50/447 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ + V + L ++ + L+ +D+ +++ + RFL + +L Sbjct: 8 KLAAQTVLAVANGKNLADELANIIAQNP---DLTAQDKGMLQDLAYGCQRFLGSLRYMLG 64 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L L L+ L V++ Q+ + A +AVV+ AVE + ++ + N+IL Sbjct: 65 KLLNKPLD--NPLLEAHLLVAMYQLNHTKNAPHAVVNEAVEYIGKMGRGQYRS-FANAIL 121 Query: 129 RRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV-- 182 RR RE+ +P W + L+ Y K + A S + L V Sbjct: 122 RRFQREQEGLNKSCQFNNIAKFNLPTWLQSSLQTQYPKHW-HNMVTAFQSHPPLTLRVNR 180 Query: 183 -KFDIETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + + + L A P + LP FA G VQD A L Sbjct: 181 RHMNADAYLLLLEQAGIAAKKLDDYAIRITTPVPVNQLPQFANGAVSVQDWGAQQAAYLL 240 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 N VLD CAAPGGKT L+ + VTALD+ K+RL +++ NL RL L A Sbjct: 241 NPQNGERVLDACAAPGGKTGHLLELANCSVTALDIDKKRLARVQDNLARLKLQAALYCSP 300 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + ++ FD +L D PC+++GTI+R+PD+ W R +D +K+A Q +L + Sbjct: 301 AQNLAEWWDGVPFDVILADVPCTASGTIKRNPDIKWLRRPNDALKTAQQQEIMLDELWKT 360 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +K GG ++ + CS+ + +++ QK LR L Sbjct: 361 LKQGGRMLLATCSIFEAENQLQCQKFLRRHADATLLEEKV-------------------- 400 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P+ + DGF+ + + Sbjct: 401 LIPNEKQ---------DGFYYALIHKK 418 >gi|238022263|ref|ZP_04602689.1| hypothetical protein GCWU000324_02170 [Kingella oralis ATCC 51147] gi|237866877|gb|EEP67919.1| hypothetical protein GCWU000324_02170 [Kingella oralis ATCC 51147] Length = 422 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 93/444 (20%), Positives = 169/444 (38%), Gaps = 51/444 (11%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L+ ++ +L D+ L + D+ + LR +I AVL Sbjct: 12 VLAQMLTFEQPADVVLSNYLRDN--CKLGRNDRHEIAETAFAALRHYQKIAAVL----RR 65 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + + + L + + + + + + Sbjct: 66 PAVQSRKAALAALILG----------RSVSISQIEDLLNNADNEKELLSSLKA------- 108 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 K E + + +P W RL+ Y E++LA + P +D+ V + Sbjct: 109 RKNEFSGYLNTAAELPSWLIARLQQHYTDEQILAFGRSVAQPAPLDVRVNTLNSKRDKAL 168 Query: 191 HKLN-----AVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 +L A+ P ++ + + P F +G VQD + + VQL G Sbjct: 169 AQLQTDYPQAIATPLAPHGIRFPNKPALNQHPLFLDGTIEVQDEGSQLLVQLVGAKRGEI 228 Query: 245 VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMD 297 ++D CA GGK + + ++ A DVS++RL L+ + R L E D Sbjct: 229 IVDFCAGAGGKTLAIGAQMANKGRIYAFDVSEKRLANLKPRMTRAGLTNIHPEKIHSETD 288 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D VLVDAPCS GT+RR+PD+ + + D + Q+ +L V+ Sbjct: 289 PRITRLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSPDTLASLQTQQQNILHAAAELVRA 348 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ +++E + L++ P EL+ + + L+ ++R+ Sbjct: 349 GGRLVYATCSILPEENENQAEHFLQTHP-DFELLDCSELLAA---QKIPLNTGKYLRL-- 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 D + DGFFA +R Sbjct: 403 ------DTATHHTDGFFAAVFQRK 420 >gi|312795301|ref|YP_004028223.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312167076|emb|CBW74079.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 428 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 96/445 (21%), Positives = 162/445 (36%), Gaps = 46/445 (10%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLADVLKFAGPADAAASRFFRAHP--KLGHAERGVIAETVFAVLRRKMEYGHLAESGSGT 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + QI L+ + + + Sbjct: 72 PARRLT-------LLGLMQIAGLNALRAHLSPQEFAWLDHVSKIDPASLPARVRTNLPLW 124 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + L R+A P+ + L ++ A P +DL + + Sbjct: 125 IESALGARLATPDAGPDAVAQELAR---------LAAALNYPAPLDLRANPIRTNRDAVL 175 Query: 191 HKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + +I +L F +G + VQD + + QL Sbjct: 176 AALVEAGVQAEPTPYAPLGIRVAGKPAIQTLAAFRQGWFEVQDEGSQLLCQLVAPRRGEM 235 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS +RL KL+ L R L + E D Sbjct: 236 VVDFCAGAGGKTLALGAMMRSSGRLYAFDVSDKRLGKLKPRLARSGLSNVHPVVIDSEHD 295 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D VLVDAPCS GT+RR+PD+ W + + + A Q +L +KP Sbjct: 296 VKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPQSVAELAVKQASILAAAARLLKP 355 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL ++E +V+ L + P+ E VP + + +AL + + P Sbjct: 356 GGRLVYATCSLLGDENEGIVEPFLAAHPM-FERVPASQVLAE---QKIALDTGDDLTLWP 411 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 G DGFFA ++R+ Sbjct: 412 H--------RHGTDGFFATVMQRVA 428 >gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N- terminal NusB regulator domain [Thermococcus sibiricus MM 739] gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N- terminal NusB regulator domain [Thermococcus sibiricus MM 739] Length = 450 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 95/455 (20%), Positives = 186/455 (40%), Gaps = 38/455 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + +LS + + +S L+ + + R + L A + ++ +ID + + Sbjct: 11 ELIADILSLIEERELSSKNALERTFKRVRGKDRE-RARGLAHAYIFEIEKWKRKIDFIGN 69 Query: 69 FVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL + L LLR+ + ++ + V D V A +DK + AK +N++ Sbjct: 70 SVLKGIKIEELDPYLANLLRIGIFEMKFKGVVPAIATDSIVR-AVKDKYDLSRAKFINAV 128 Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 LR V + ++ ++ P W+ E + + G E L + + P Sbjct: 129 LRDVESFDVGKALEALRERDKIEYLSIKFSHPRWYVEYVIDLLGYEEGLRLLLSNNKPQR 188 Query: 178 IDLTVKF---DIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + V DI++ + L +++ E I L G+ EG + +QD Sbjct: 189 YYIRVNPLKTDIDSLSDYLEEHGVRVTRTPVDDILKVLEYKTPITHLEGYKEGYFVIQDL 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +++ + VLDL AAPG KT + + + ++ A+D S RL K+ + Sbjct: 249 ASAYVAHVLSPEKGERVLDLAAAPGSKTFHVAQLMENTGEIIAVDYSLERLRKMETKMKI 308 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + ++ D + + FD +++DAPCSS+GT R+ P+V W + + I K Q+ Sbjct: 309 LGVKNVKLVHADGMKFKDMRKFDKIILDAPCSSSGTYRQFPEVKWRFNKEKIKKVIQVQK 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++ ++ G + +S CS+ ++EE V+ L + P + ++ Sbjct: 369 AMIRNAYKNLRDEGEMTYSTCSIRIDENEENVKYALEKVGFDLVTYPFSWGERGFTEIGE 428 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 M+ + + FF L+R Sbjct: 429 -------------MVFRSFTHLHDCNSFFIAKLKR 450 >gi|167580113|ref|ZP_02372987.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis TXDOH] Length = 420 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 165/446 (36%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLADVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + V V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSAVKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDEVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V + L + P LVP + + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|226942185|ref|YP_002797258.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii DJ] gi|226717112|gb|ACO76283.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii DJ] Length = 443 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 117/425 (27%), Positives = 194/425 (45%), Gaps = 32/425 (7%) Query: 36 SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95 + ++ RD+ L + + R+ PR+ + + +L L ++ LL + + Q+L+ Sbjct: 28 AQLEQVAPRDRALAQELAFGAARWQPRLALLAERLLRKPLKAADRDVEALLLIGLYQLLH 87 Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI----IPEW 151 + +A + V A++ ++ L+N++LRRV RE LL +A + P W Sbjct: 88 TRIPAHAAIGETVACAEQLRKP-WAKALLNAVLRRVQREGEALLAELANDPVARTAHPRW 146 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIR---- 204 ++ L + E AI A + L V +T+ L A + R Sbjct: 147 LQQALAQHWP-EHWEAICAADNEHPPLTLRVNRRLTARDTYLATLKAAGIAASACRFSRD 205 Query: 205 --LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262 L + P + SLPGFAEG+ VQD +A + L + VLD C APGGKT L+ S Sbjct: 206 GILLDEPCDVRSLPGFAEGLVSVQDEAAQLAAYLLEPMPGQRVLDACCAPGGKTCHLLES 265 Query: 263 GAKV---TALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCS 317 ++ A+D+ ++RL ++R NLDRL L A + + F +L+DAPCS Sbjct: 266 EPRLAELVAIDLEEKRLARVRENLDRLGLAARLVAADARATEAWWDGRRFQRILLDAPCS 325 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 +TG IRRHPD+ TR DI A Q +LL ++ GGI++++ CS+ ++ + + Sbjct: 326 ATGVIRRHPDIKLTRQASDIPALASLQGELLDALWPTLEVGGILLYATCSILPAENSDTI 385 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L +P EL + L+ ++ P G DGF+ Sbjct: 386 AAFLARTPGAREL----DIASGFVGAKPGLAQRHGRQLLPQ--------PHGHDGFYYAK 433 Query: 438 LRRLI 442 L ++ Sbjct: 434 LIKIA 438 >gi|193215241|ref|YP_001996440.1| Fmu (Sun) domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193088718|gb|ACF13993.1| Fmu (Sun) domain protein [Chloroherpeton thalassium ATCC 35110] Length = 448 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 91/449 (20%), Positives = 173/449 (38%), Gaps = 33/449 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + LL + +L + L D+ + + LR ++AV+ Sbjct: 13 AYELLCS---EARPADAVLSEYLRARKY--LGSHDRSFISETIYNLLRKELFLEAVVQKS 67 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD---LAVEQAKRDKENRHFAKLVNSI 127 S + S + + + + + +D+ A+VD A+ + A + Sbjct: 68 AKGS--SRPKSFKNVGVLYLFLLSDMDIERRALVDVFGEMASLAEPYFDALDAAYQAFTD 125 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---F 184 + I L++ A PEW E L + + + I ++ P + L Sbjct: 126 TTKSKSTPILFLEKHA----FPEWMTEELLKEFDEPTLQLIYESLNKPAPLALRANSLKI 181 Query: 185 DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 E KL +PT + + I+ + +G+ +QD + + +L Sbjct: 182 SREALQKKLEKESIPTFLGKLSADALICKGRRRIIQSQCYQDGLCEIQDEGSQLISRLLD 241 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 +VLD CA GGKT L + + + A DV+ +R +R + R + Sbjct: 242 PKPKDTVLDACAGGGGKTLHLAALMKNKGAIFAYDVNPKRFGNIRQRIKRSGQQNIRLLD 301 Query: 294 --IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 ++ F + D +L+DAPC+ +GT+RR+PD+ + + + Q ++L + Sbjct: 302 SPEKLAQFKNDWHEKIDCLLIDAPCTGSGTVRRNPDLKKRLTKEALQRITAQQAEILEEF 361 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +KP G ++++ CSL + ++E ++ L P L P++S A A Sbjct: 362 SVLLKPNGKMLYATCSLFRDENEGQIESFLEKHP-DFRLEPISSILENERHAAHAALQNK 420 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 R + K+ DGFFA R+ Sbjct: 421 --RFEGETYLKLRPDKDNTDGFFAAIFRK 447 >gi|323527123|ref|YP_004229276.1| Fmu (Sun) domain-containing protein [Burkholderia sp. CCGE1001] gi|323384125|gb|ADX56216.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1001] Length = 419 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 162/443 (36%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V+R + L ++ ++ V LR + + S Sbjct: 14 LLAEVLRLNGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + A A + V +A+ + S+ R+ Sbjct: 72 PARRMA-------LLGL-----MQTAGRAALKPFVSEAESRWLDHVATIDPESLPLRIRL 119 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 +P+W + L + + ++ A P +DL + Sbjct: 120 N-------------LPDWIHQALARRFEPAELAQLAAALNYPAPLDLRANPMKASRDEVL 166 Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L+ + G + L F +G VQD + + L Sbjct: 167 GALSKAGIEAGATPFAPFGVRVAGKPPLTKLDAFQQGWLEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VVQ+ L P + + ID+ M ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHPDFALVPAREVLAEQRIDLEMGD----YLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|254720564|ref|ZP_05182375.1| Fmu (Sun) domain-containing protein [Brucella sp. 83/13] gi|265985597|ref|ZP_06098332.1| fmu domain-containing protein [Brucella sp. 83/13] gi|306838069|ref|ZP_07470926.1| Fmu (Sun) domain-containing protein [Brucella sp. NF 2653] gi|264664189|gb|EEZ34450.1| fmu domain-containing protein [Brucella sp. 83/13] gi|306406806|gb|EFM63028.1| Fmu (Sun) domain-containing protein [Brucella sp. NF 2653] Length = 429 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQGRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDIVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|115376942|ref|ZP_01464162.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca DW4/3-1] gi|310820573|ref|YP_003952931.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|115366053|gb|EAU65068.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca DW4/3-1] gi|309393645|gb|ADO71104.1| Methyltransferase, RsmB/NOP family [Stigmatella aurantiaca DW4/3-1] Length = 480 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 98/454 (21%), Positives = 171/454 (37%), Gaps = 48/454 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + LD A L ++ V V LR +D +L Sbjct: 51 QACLEAYGSVRHEGRLSDRALDFTLRRKAH--LYSNERRAVAERVYALLRRQRTVDWLLA 108 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL---AVEQAKRDKENRHFAKLVN 125 R + + Q +LR++ ++IL+ + AVV+ E + A + Sbjct: 109 R-ARPGFDRLETTRQDVLRLAASRILHGE-PLEAVVNSSSLPSEDSTSLGALPRAAGELE 166 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK-- 183 ++ + +P++ + E ++A + V Sbjct: 167 ALPLAKR---------FPIAASLPDFLAVKF-QETFGEDASQAAEAMNERAPLTARVNLL 216 Query: 184 -FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQL 236 D +L A + + L ++ SL F +G+ +QD + + Sbjct: 217 KGDRAELQRRLAAEGVESTPTPLSPLGLWLETRVNVFSLQCFKDGLLELQDEGSQLLGM- 275 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 V+D CA GGKT Q + + + ALDV + R+E+LR R ++ Sbjct: 276 LVDSPPTRVVDACAGAGGKTLQLAAQMKNRGDLHALDVDEVRIEELRKRARRAGVHNVRT 335 Query: 294 I-------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 D K D VLVDAPCS TGT RR PD + +D+ + A Q+ Sbjct: 336 QLIPAEGPAADEALVALKDKADRVLVDAPCSGTGTYRRKPDGRYRLTPEDLKEHAARQKA 395 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + + VKPGG +++ CS+ ++++E V++ L P + P++ + ++ Sbjct: 396 LLERFSTMVKPGGRLIYGTCSILREENEAVIEDFLSRHP-DFTVRPVSQELGPELGDKVS 454 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P ++R+ P + DGFF L R Sbjct: 455 RGP--FLRLAPH--------THNTDGFFGAILVR 478 >gi|121635057|ref|YP_975302.1| SUN-family protein [Neisseria meningitidis FAM18] gi|120866763|emb|CAM10516.1| SUN-family protein [Neisseria meningitidis FAM18] gi|325128459|gb|EGC51340.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis N1568] gi|325132456|gb|EGC55149.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M6190] gi|325138230|gb|EGC60799.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis ES14902] gi|325142541|gb|EGC64941.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis 961-5945] gi|325198495|gb|ADY93951.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis G2136] Length = 418 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|325130412|gb|EGC53176.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis OX99.30304] gi|325136147|gb|EGC58755.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M0579] gi|325201940|gb|ADY97394.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240149] gi|325208309|gb|ADZ03761.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis NZ-05/33] Length = 418 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418 >gi|226939434|ref|YP_002794507.1| sun-like protein [Laribacter hongkongensis HLHK9] gi|226714360|gb|ACO73498.1| Probable sun-like protein [Laribacter hongkongensis HLHK9] Length = 447 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 100/448 (22%), Positives = 163/448 (36%), Gaps = 57/448 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 L V+ +L + D R L +D+ L+ + LR + A+ Sbjct: 10 AVVDALRRVLPCERPADAVLSAYFRD--MRKLGAQDRHLIAETIFAVLRRRAFLTALTAP 67 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + ++L+ S+ ++ L+V + + E K+ A + Sbjct: 68 ---------SATPRRLVIASLIKVRGLNVRELDGI--LTEAEKKWVVELKAAHPELDL-- 114 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA-ISDACISPLYIDLTVKF---D 185 AG + +PEW + L + + + + + +DL Sbjct: 115 -------------AGRAELPEWVVDALRAGGQDDDAIVALGHSMQNSAPLDLRANTLKMR 161 Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E L A L I P F EG VQD + + L G Sbjct: 162 REDVLAALRAAGLELAPTPFSPVGLRVKGKPPINRHPLFLEGAVEVQDEGSQLLGLLVGA 221 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 V+D CA GGKT ++ S ++ A DVS++RL L+ L R L Sbjct: 222 RRGEMVVDFCAGAGGKTLHLGAMMASRGRLYAFDVSEKRLANLKPRLARSGLSNVTPQLI 281 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D+ D VLVDAPCS GT+RR+PD+ + + I + Q +L + Sbjct: 282 QNENDSKIKRLAGKVDRVLVDAPCSGLGTLRRNPDLKFRQSPASIAELNKTQASILARAA 341 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 VKPGG +V++ CS+ +++ +V L + P E + + Sbjct: 342 QLVKPGGRLVYATCSVLPAENDAIVDAFLAAHPEFSETPVNTLLEQAGVALDTGSR---- 397 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+ P + DGFFA L R Sbjct: 398 LRLLPGV--------HSTDGFFAAVLTR 417 >gi|187930737|ref|YP_001901224.1| sun protein [Ralstonia pickettii 12J] gi|187727627|gb|ACD28792.1| sun protein [Ralstonia pickettii 12J] Length = 443 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 101/438 (23%), Positives = 166/438 (37%), Gaps = 34/438 (7%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R+ +L +D + V+ + R+L D ++ ++ Sbjct: 22 LRQGTALPQAIDAVC-----HGQPAPARGAVQDLAYRATRWLGSTDWLIRTLIPRPPAEG 76 Query: 79 KYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 LLRV++AQ+L + VVD V A D + H ++N +LRR RE+ Sbjct: 77 AA---NLLRVALAQLLDDPQPYAPFTVVDQTVTAASADPKLSHGKGMINGVLRRFLREQP 133 Query: 137 ----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------DLTVKFDI 186 ++ + + P W+ + + + Y ++ P + + V + Sbjct: 134 ALVADMQADPSAATNYPMWWIDAVRSAYPDAWQTILAAGNRRPPMVLRVNPRRIAVDAYL 193 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + +PGFA+G VQDA A + L VL Sbjct: 194 ARLAEAGIDAERIGEQAVRLARAIPVSDVPGFADGDVSVQDAGAQLAATLLDVAPGQRVL 253 Query: 247 DLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 D CAAPGGKT L+ + TAL+ R ++ NL RL+ A + Sbjct: 254 DACAAPGGKTGHLLELADRLDATALESDAARAVRISENLTRLNQTATICVGDAAKPDTWW 313 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +L D PCS+ G +RRHPD+ W R D+ QR ++ + +KPGG +V Sbjct: 314 DGRPFDRILADVPCSAAGIVRRHPDIRWLRRPADLKALVALQRDIVRALWACLKPGGKLV 373 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CS+ + E+ + R + L S D A A Sbjct: 374 YVTCSIFPTEGEDQARWFERHLEDAIRLHAPGQLLPVSPDAAQAS----------GFASG 423 Query: 423 IDGVSSGMDGFFAVALRR 440 + DGFF ++ Sbjct: 424 ASPMPLDHDGFFYAVFQK 441 >gi|58040691|ref|YP_192655.1| tRNA/rRNA cytosine-C5-methylase [Gluconobacter oxydans 621H] gi|58003105|gb|AAW61999.1| tRNA/rRNA cytosine-C5-methylase [Gluconobacter oxydans 621H] Length = 457 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 100/467 (21%), Positives = 169/467 (36%), Gaps = 61/467 (13%) Query: 1 MKSGMNARLV-SSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M ARL + LL + R + + + + + D+ + AIV LR Sbjct: 1 MTP--AARLSGAIDLLCAIQNAPRRPADATANAFFRERRY--IGGGDRRAISAIVWDVLR 56 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQ--QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 R+ L + L L + +E ++ Sbjct: 57 GWRRLQWHLKDISG----DISPRLLCSASLLLG---------------GETMENVRKLFS 97 Query: 117 NRHFAKLVNSILRRVS------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 +A+ + ++ +E Q IA P+W L +G R+ + Sbjct: 98 GERYAQKPLTSREDMALKGLEGKELSTQKQPIAVRLEYPDWLDSALRETFGN-RLPDEME 156 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEG 221 A + +DL V E +L L +L + + + F +G Sbjct: 157 AMLGTPTLDLRVNLLKGSREAAIRELRRESLQAEPTKLSPWGLRLDGRQPVTATQAFKDG 216 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278 + +QD + + V VLD CA GGKT A + + + A DV ++RL+ Sbjct: 217 LVEIQDEGSQLVVAAADARGEHRVLDYCAGAGGKTLALAMTMENRGHIVACDVHEKRLDG 276 Query: 279 LRCNLDRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L R ++ + D + FD VLVDAPCS TGT RR+PD + Sbjct: 277 AVKRLRRAGVHNVERHLLVSGDKWAKRRAGSFDRVLVDAPCSGTGTWRRNPDARLRLTPE 336 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI + Q ++L + S VKPGG ++++ CSL ++ + + L+ V L Sbjct: 337 DIQELVIKQAQILDRAASLVKPGGRIIYATCSLLACENGQQIDAFLKRRTDFVRLPKEQM 396 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++ + + G DGFFA L R++ Sbjct: 397 SELLPAELRNKA------------QFSLTPLRDGTDGFFACVLERVV 431 >gi|238028410|ref|YP_002912641.1| Fmu (Sun) domain-containing protein [Burkholderia glumae BGR1] gi|237877604|gb|ACR29937.1| Fmu (Sun) domain protein [Burkholderia glumae BGR1] Length = 461 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 101/443 (22%), Positives = 164/443 (37%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFTGPADAATSRFFRAHP--KLGHGERGVIAEAVFAVLRRKMEFSHLAESGSGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + A + + V A+ S+ RV Sbjct: 72 PARRLT-------LLGL-----MQTAGRSALRQHVSDAEWAWLEHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + +P+W + L + E + + A P +DL V E Sbjct: 118 -----------RTNLPDWIHQALGQRFDAEALAQFAAAVNYPAPLDLRVNLQKATREQVL 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + G + LP F +G+ VQD + + L Sbjct: 167 DALRIAGIEAGETPFAPNGVRVVGKPALTRLPIFQDGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + D I + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRDSIEELAPKQASILASAARLVKA 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V + L + P LVP + + + L ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVTQFLAAHP-DFVLVPASQVLAE---QRIGLDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|300022354|ref|YP_003754965.1| Fmu (Sun) domain protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524175|gb|ADJ22644.1| Fmu (Sun) domain protein [Hyphomicrobium denitrificans ATCC 51888] Length = 431 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 95/459 (20%), Positives = 154/459 (33%), Gaps = 49/459 (10%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M+ G AR + +L ++ + + L F D+ + +V LR Sbjct: 1 MRPG--ARIAAAIEVLEAILNRYQPVAMALTDWGKAHRFAG--SGDRNAIGGLVYDALRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + L L + A + ++ E + Sbjct: 57 RASLAWALGDDGPR-----------ALAIGAA---------PQALGISAEAVIAACDGAE 96 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + S R + A + IPEW +G +A +A D Sbjct: 97 HSPPPLSDAERAGLTRDMAEAPDAARADIPEWLWPSFSAQFGGN-AVAEGEAMARRAPAD 155 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQ 226 L V T L A++ ++ + F G + +Q Sbjct: 156 LRVNTLKSTQEKVLKALLPFGAAPCPVSPIGIRVPPPSGAQRTPNLQAEAAFQAGWFEIQ 215 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + I L G VLDLCA GGKT A L+ + ++ A D + +L+ + + Sbjct: 216 DEGSQIAALLSGAGPRKQVLDLCAGAGGKTLALAALMQNTGQLYAYDADRNQLKPIFDRI 275 Query: 284 DRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ ++ FD VL DAPC+ TGT RR PD W + + Sbjct: 276 KRANVRNVQVLRAGDETALAALGPRFDVVLADAPCTGTGTWRRRPDAKWRLKPEALAARQ 335 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR +L + S VKPGG +V+ CS+ +++ E V L + +VP A+ + Sbjct: 336 AEQRSVLARAASLVKPGGQIVYVTCSILPEENVEQVAAFLDAH-RDFRIVPTADAWAAAG 394 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G DGFF L R Sbjct: 395 LAGEVPVSADGR----SDTLLLSPGRHGTDGFFIAVLAR 429 >gi|187477912|ref|YP_785936.1| S-adenosyl-l-methionine transferase [Bordetella avium 197N] gi|115422498|emb|CAJ49023.1| putative S-adenosyl-l-methionine transferase [Bordetella avium 197N] Length = 483 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 95/444 (21%), Positives = 160/444 (36%), Gaps = 54/444 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L ++R +L + L RD+ + V LR L R + + Sbjct: 48 VLGEMLRWEHPADAVLSHWLRANP--ALGGRDRAELAEGVYDVLRNLRRYRQLAES---- 101 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + ++L + +A V V A E A++ + Sbjct: 102 ---GVGPAERRLAILGLA--------ATRGV-EYVNDALDPGEAAWLARVDQVDPASLPA 149 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 +P+W ERL E ++ + +K + + L Sbjct: 150 NV---------RYSLPDWLAERLSVLPQAESLMGALNQAAQLDARANPLKIERDALLEVL 200 Query: 194 NAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A + SI P F +G VQD + + L G + Sbjct: 201 RAGPAGRYDPQPMPYSPWGIRFKGHPSINRWPEFEKGEVEVQDEGSQLLALLVGPRRSEM 260 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT L+ S ++ ALDVS RL + + R L + E D Sbjct: 261 IIDFCAGAGGKTLLLGALMRSTGRLYALDVSAARLARAKPRFARSGLSNVVPVVIDSEND 320 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A VLVDAPCS GT+RR+PD+ W ++ + + Q ++L V P Sbjct: 321 ARVKRLAGKAQRVLVDAPCSGFGTLRRNPDLKWRQNPQSLAEMVALQHRILKSAARCVAP 380 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL +++ + + L +P L + + + + ++++ P Sbjct: 381 GGRLVYATCSLLPEENAQQADRFLAENPGFERLDAAALLHNRCDKLQL---EGPYVQLRP 437 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 D+ G DGFFA R Sbjct: 438 DL--------HGTDGFFAAVFERK 453 >gi|295677440|ref|YP_003605964.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1002] gi|295437283|gb|ADG16453.1| Fmu (Sun) domain protein [Burkholderia sp. CCGE1002] Length = 419 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 94/443 (21%), Positives = 154/443 (34%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V+R + L ++ ++ V LR + + S Sbjct: 14 LLAEVLRLNGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRMA-------LLGLMQ------------------TVGRSALKPFVSEAEATWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + +P+W + L + + ++ A P +DL + Sbjct: 107 KIDPESLPLRIRLNLPDWICQALSMRFEGAELAQLAAALNYPAPLDLRANPIKASRDDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + G + L F +G VQD + + L Sbjct: 167 GALAKAGIEAGATPFAPFGVRVVGKPALTKLDAFQQGWLEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + I + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESIAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VVQ+ L LVP+ + + L ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLAEH-SDFALVPVRDVLAE---QRIELEMGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus R309803] gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus R309803] Length = 360 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 165/372 (44%), Gaps = 34/372 (9%) Query: 93 ILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAG 144 ++YLD V + A + AVE AKR + ++ A +VN +LR + RE + ++R+A Sbjct: 1 MIYLDRVPERAAIHEAVEIAKR-RGHKGIAGMVNGVLRSIQREGVPSVDEIKDPVERLAI 59 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AV 196 + P W + + Y E + + + P V D T + A Sbjct: 60 ATSHPVWLVQEWASEYDLETAGKMCEINMLPPVPTARVNVDKVTVEEAIELLASEGIEAK 119 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 ++ ++ F +G +QD S+ + + VLD CAAPGGKT Sbjct: 120 RGDLSDDAIQIERGNVAHTDAFKKGFLSIQDESSMLVARALEPNEGDVVLDSCAAPGGKT 179 Query: 257 AQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAV 310 + KV +LD+ ++ ++ DRL L + +D ++ + FD + Sbjct: 180 THIAERLKGTGKVMSLDLHAHKVRLIKQQADRLGLENVETKALDARKVQEHFANETFDKI 239 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 LVDAPCS G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K Sbjct: 240 LVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEK 299 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+V+++ L+ +P E + + + EG ++I P Sbjct: 300 IENEQVIERFLQENP---EFEWDTTIKERMPEKLSPYIDEGQVQILPHYFA--------T 348 Query: 431 DGFFAVALRRLI 442 DGF+ LR+ + Sbjct: 349 DGFYIACLRKKV 360 >gi|304387335|ref|ZP_07369527.1| SUN-family protein [Neisseria meningitidis ATCC 13091] gi|254670558|emb|CBA06419.1| conserved hypothetical protein [Neisseria meningitidis alpha153] gi|304338586|gb|EFM04704.1| SUN-family protein [Neisseria meningitidis ATCC 13091] Length = 418 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 166/446 (37%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A ++ + L ++R+ Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCAEL-LQNLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|187925130|ref|YP_001896772.1| Fmu (Sun) domain protein [Burkholderia phytofirmans PsJN] gi|187716324|gb|ACD17548.1| Fmu (Sun) domain protein [Burkholderia phytofirmans PsJN] Length = 419 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 92/443 (20%), Positives = 155/443 (34%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKLTGPADATTSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAEGGAGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F Sbjct: 72 PARRMA-------LLGLMQ------------------TAGRNALKPFVSEQELSWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + +P+W + L + + ++ A P +DL + Sbjct: 107 KIDPESLPLRIRLNLPDWIYQALSKRFDAAELAQLAAALNYPAPLDLRANPIKASRDDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + L+ + G + L F G VQD + + L Sbjct: 167 NALSKAGIEGGATPFAPFGVRVVGKPPLTKLDAFQHGWVEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E VVQ+ L P + + + ID+ M ++ + P Sbjct: 347 GGRLVYATCSILEAENEAVVQQFLADHPDFALVPARDVLAEQRIDLEMGD----YLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|261379936|ref|ZP_05984509.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria subflava NJ9703] gi|284797646|gb|EFC52993.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria subflava NJ9703] Length = 419 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 161/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + S +P+W E+L+ + +E +L + P +D+ V + Sbjct: 105 KARKTEFSDGLNTASELPQWLVEQLQQHWSEEEILTFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKITLNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + T+ + Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSTETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418 >gi|161870221|ref|YP_001599391.1| SUN-family protein [Neisseria meningitidis 053442] gi|161595774|gb|ABX73434.1| SUN-family protein [Neisseria meningitidis 053442] Length = 419 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 11 AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 64 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 65 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 105 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 106 KARKTEFSDGLNTAAELPQWLVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDK 165 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 166 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 225 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 226 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 285 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 286 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 345 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 346 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLDTGKYLRL 401 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 402 --------DSARHQTDGFFAAVLQRK 419 >gi|148558426|ref|YP_001257373.1| putative sun protein [Brucella ovis ATCC 25840] gi|161620430|ref|YP_001594316.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365] gi|225628803|ref|ZP_03786837.1| sun protein [Brucella ceti str. Cudo] gi|254699632|ref|ZP_05161460.1| Fmu (Sun) domain-containing protein [Brucella suis bv. 5 str. 513] gi|254702755|ref|ZP_05164583.1| Fmu (Sun) domain-containing protein [Brucella suis bv. 3 str. 686] gi|254706110|ref|ZP_05167938.1| Fmu (Sun) domain-containing protein [Brucella pinnipedialis M163/99/10] gi|254711590|ref|ZP_05173401.1| Fmu (Sun) domain-containing protein [Brucella pinnipedialis B2/94] gi|254712187|ref|ZP_05173998.1| Fmu (Sun) domain-containing protein [Brucella ceti M644/93/1] gi|254715257|ref|ZP_05177068.1| Fmu (Sun) domain-containing protein [Brucella ceti M13/05/1] gi|256015140|ref|YP_003105149.1| sun protein, putative [Brucella microti CCM 4915] gi|256029774|ref|ZP_05443388.1| Fmu (Sun) domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256059422|ref|ZP_05449624.1| Fmu (Sun) domain-containing protein [Brucella neotomae 5K33] gi|260167120|ref|ZP_05753931.1| sun protein, putative [Brucella sp. F5/99] gi|260568338|ref|ZP_05838807.1| hypothetical protein BAVG_2454 [Brucella suis bv. 4 str. 40] gi|261216983|ref|ZP_05931264.1| fmu domain-containing protein [Brucella ceti M13/05/1] gi|261313548|ref|ZP_05952745.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261319213|ref|ZP_05958410.1| fmu domain-containing protein [Brucella pinnipedialis B2/94] gi|261319853|ref|ZP_05959050.1| fmu domain-containing protein [Brucella ceti M644/93/1] gi|261323388|ref|ZP_05962585.1| fmu domain-containing protein [Brucella neotomae 5K33] gi|261750096|ref|ZP_05993805.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513] gi|261753350|ref|ZP_05997059.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686] gi|261756519|ref|ZP_06000228.1| hypothetical protein BATG_00367 [Brucella sp. F5/99] gi|265986786|ref|ZP_06099343.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1] gi|148369711|gb|ABQ62583.1| putative sun protein [Brucella ovis ATCC 25840] gi|161337241|gb|ABX63545.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365] gi|225616649|gb|EEH13697.1| sun protein [Brucella ceti str. Cudo] gi|255997800|gb|ACU49487.1| sun protein, putative [Brucella microti CCM 4915] gi|260155003|gb|EEW90084.1| hypothetical protein BAVG_2454 [Brucella suis bv. 4 str. 40] gi|260922072|gb|EEX88640.1| fmu domain-containing protein [Brucella ceti M13/05/1] gi|261292543|gb|EEX96039.1| fmu domain-containing protein [Brucella ceti M644/93/1] gi|261298436|gb|EEY01933.1| fmu domain-containing protein [Brucella pinnipedialis B2/94] gi|261299368|gb|EEY02865.1| fmu domain-containing protein [Brucella neotomae 5K33] gi|261302574|gb|EEY06071.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261736503|gb|EEY24499.1| hypothetical protein BATG_00367 [Brucella sp. F5/99] gi|261739849|gb|EEY27775.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513] gi|261743103|gb|EEY31029.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686] gi|264658983|gb|EEZ29244.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1] Length = 429 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|319637890|ref|ZP_07992656.1| SUN-family protein [Neisseria mucosa C102] gi|317401045|gb|EFV81700.1| SUN-family protein [Neisseria mucosa C102] Length = 419 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 85/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKGL---------LDEEETAFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW-- 189 K E + + +P+W E+L+ + +E +L + P +D+ V Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILTFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 190 ------AHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 A +A P ++ + ++ F +G VQD + + L G Sbjct: 165 ILPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILNAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418 >gi|254691228|ref|ZP_05154482.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv. 6 str. 870] gi|256256415|ref|ZP_05461951.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv. 9 str. C68] gi|260756831|ref|ZP_05869179.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260882647|ref|ZP_05894261.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297249775|ref|ZP_06933476.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella abortus bv. 5 str. B3196] gi|260676939|gb|EEX63760.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260872175|gb|EEX79244.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68] gi|297173644|gb|EFH33008.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella abortus bv. 5 str. B3196] Length = 429 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAEHARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLGELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|62317725|ref|YP_223578.1| Sun family protein [Brucella abortus bv. 1 str. 9-941] gi|83269708|ref|YP_418999.1| hypothetical protein BAB2_0845 [Brucella melitensis biovar Abortus 2308] gi|189022980|ref|YP_001932721.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus S19] gi|237817268|ref|ZP_04596260.1| Sun family protein [Brucella abortus str. 2308 A] gi|254699015|ref|ZP_05160843.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv. 2 str. 86/8/59] gi|254732462|ref|ZP_05191040.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv. 4 str. 292] gi|260544966|ref|ZP_05820787.1| hypothetical protein BAUG_0844 [Brucella abortus NCTC 8038] gi|260760262|ref|ZP_05872610.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260763501|ref|ZP_05875833.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|62197918|gb|AAX76217.1| hypothetical sun protein [Brucella abortus bv. 1 str. 9-941] gi|82939982|emb|CAJ13011.1| SAM (and some other nucleotide) binding motif:Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella melitensis biovar Abortus 2308] gi|189021554|gb|ACD74275.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus S19] gi|237788081|gb|EEP62297.1| Sun family protein [Brucella abortus str. 2308 A] gi|260098237|gb|EEW82111.1| hypothetical protein BAUG_0844 [Brucella abortus NCTC 8038] gi|260670580|gb|EEX57520.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260673922|gb|EEX60743.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] Length = 429 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAEHARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|171319738|ref|ZP_02908826.1| Fmu (Sun) domain protein [Burkholderia ambifaria MEX-5] gi|171095010|gb|EDT40033.1| Fmu (Sun) domain protein [Burkholderia ambifaria MEX-5] Length = 420 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 99/446 (22%), Positives = 160/446 (35%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFTGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q L + F + Sbjct: 72 PARRLT-------LLGLMQTL------------------GRNALKPFVSDTEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W + L + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRVRTNLPDWIYQALSARFDAEELAQLAAALNYPAPLDLRANAQKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G +V P F EG VQD + + L Sbjct: 167 DALRAEGIDAGETPFAPQGVRVVGKPALTRLQLFQEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLTKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIEELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P V L A D +A+ ++ + P Sbjct: 347 GGRLVYATCSVLHAENEAIVEQFLADHPEFV----LVPAQQVLADQRIAIETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|240113069|ref|ZP_04727559.1| putative SUN-family protein [Neisseria gonorrhoeae MS11] gi|268599155|ref|ZP_06133322.1| SUN-family protein [Neisseria gonorrhoeae MS11] gi|268583286|gb|EEZ47962.1| SUN-family protein [Neisseria gonorrhoeae MS11] Length = 418 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 84/446 (18%), Positives = 162/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFRKHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFFGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQ + + L G Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQGEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D+ ++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIVEKRLANLKPRMTRAGLTNIHPERIGSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E +++ L P E P+N A ++ + L ++R+ Sbjct: 345 KPQGCLVYATCSVLPEENELQIKRFLSEHP---EFEPVNCAEL-LQNLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418 >gi|325204344|gb|ADY99797.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria meningitidis M01-240355] Length = 418 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 85/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N ++ + L ++R+ Sbjct: 345 KPQGRLVYATCSILPEENELQVERFLSEHP---EFEPVNCVEL-LQNLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|159037486|ref|YP_001536739.1| Fmu (Sun) domain-containing protein [Salinispora arenicola CNS-205] gi|157916321|gb|ABV97748.1| Fmu (Sun) domain protein [Salinispora arenicola CNS-205] Length = 508 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 99/449 (22%), Positives = 156/449 (34%), Gaps = 44/449 (9%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R +L D L RD + TLR L +DA+L + R Sbjct: 75 RDDAYANLVLPSILRDV---GLVGRDAAFATELTYGTLRHLGTLDAILTDAAGREVARID 131 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 ++ LR+ Q+L+ V +A V V+ + N++LR V+ E Sbjct: 132 PPVRDALRLGAYQLLHTRVPAHAAVSSTVDLVRSV--GPGATGFANAVLREVTGRDAEAW 189 Query: 140 Q-------------RIAGISIIPEWFKERLENFYGKE--RVLAISDACISPLYIDLTVKF 184 +A P+W G + + + L + Sbjct: 190 VARLAPPLETDPIGHLALAYSHPQWIVRAFAEALGGDLGETTRLLIENNERPAVHLCARP 249 Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA----SIPVQLF 237 D T A ++ + ++ LP EG VQD + Sbjct: 250 GLADPVTLADEVGGAPGAFSPYAVYSGGGALGDLPALTEGRAHVQDEGSQLVAQALAVAA 309 Query: 238 GTLNNLSVLDLCAAPGGK----TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 + LDLCA PGGK A GA++TA++VS+ R +R L + Sbjct: 310 LDGPDGRWLDLCAGPGGKSGLLGAIAAQRGARLTAVEVSEHRARLVRQATHDLPVTVLHT 369 Query: 294 IEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + FD VLVDAPC+ G++RR P+ W R D+ QR+LL Sbjct: 370 DGRAVGSTPKLAEGHFDRVLVDAPCTGLGSLRRRPESRWRRQPSDLPALTRLQRELLAAA 429 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + + GG+V + CS ++ V + R +PV+ V + + L Sbjct: 430 LRAARSGGLVAYVTCSPHVVETHVTVTEAARRCGVPVDFVDARPLLPEGMP---GLGDGP 486 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P G D F LRR Sbjct: 487 TVQLWPH--------RHGTDAMFLAVLRR 507 >gi|30248116|ref|NP_840186.1| SAM-binding motif-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180001|emb|CAD83996.1| SAM (and some other nucleotide) binding motif:NOL1/NOP2/sun f [Nitrosomonas europaea ATCC 19718] Length = 419 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 161/443 (36%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 + ++ + LL + D L Q D+ + V LR ++ + Sbjct: 14 AVRKILPLQAPADVLLRQFFQDH--HKLGQNDRGTIAEAVFGILRRRFFLEKLAGKATAR 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 L L L R Q + L E A +E + + Sbjct: 72 EL-----VLAYLTR---FQGMNLR-----------ELAPLIRETEIKWI-------QQIK 105 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 Q ++ + PEW E+L+ ++ E +L + P +D+ V E Sbjct: 106 AVKLEEQPLSIRAEFPEWLVEKLQKYHSDEEILRLGQTLQQPAPLDIRVNSLLAKREEVL 165 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L + + I P F G VQD + + L Sbjct: 166 AALEQQEIEAQPTPFSPVGIRITGKPAINRNALFLSGKIEVQDEGSQLLGFLLAPKRGEM 225 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CA GGKT L+ S ++ A DVS++RL L+ L R L +D+ Sbjct: 226 VVDFCAGAGGKTLLLGALMHSRGRLYAFDVSEKRLNNLKPRLKRSGLSNIHPQRIDSERD 285 Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D V+VDAPCS GT+RR+PD+ W + + I + Q +L + +KP Sbjct: 286 AKLKRLAGKIDRVMVDAPCSGLGTLRRNPDLKWRQSPESIDELQKKQMAILTAAANLLKP 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL ++++++V+ L + P L + I + Sbjct: 346 GGRLVYATCSLLPEENQQIVEHFLANHPQFSILHCDELLAQQKIHLPDT----------- 394 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 ++ + D FFA L R Sbjct: 395 GKFLQLSPLYHNTDSFFAAVLER 417 >gi|306840812|ref|ZP_07473559.1| Fmu (Sun) domain-containing protein [Brucella sp. BO2] gi|306289207|gb|EFM60456.1| Fmu (Sun) domain-containing protein [Brucella sp. BO2] Length = 429 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSIFW--- 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 R + L +L D D +VD +R + +++ Sbjct: 63 --------RMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQGRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDIVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P + D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVAQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|319941941|ref|ZP_08016262.1| fmu domain-containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804594|gb|EFW01464.1| fmu domain-containing protein [Sutterella wadsworthensis 3_1_45B] Length = 491 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 97/445 (21%), Positives = 175/445 (39%), Gaps = 52/445 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L +++ L+ L + + + RD+ L+ + LR + A + V Sbjct: 80 RALKVILKFDGPADVLMKLFFKSNPQLGM--RDRGLIAEGIYDALRRYGTLRAAMRPVH- 136 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 P + L L ++ Q D + L+ V Sbjct: 137 ---PDRAPRLAALTVLA-------------------RQHGIDALSPSSIGSEEGPLKNVL 174 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV-KFDIETWAH 191 + + +P+W + +E Y + L + +PL + + + K E Sbjct: 175 AFDVSKAPAH-VQAELPQWLFDLIEAQYPDSQALYAAMKEGAPLDLRVNLLKATREEVLA 233 Query: 192 KLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +L + L + P + +G+ VQD + + +L + Sbjct: 234 ELAKNGVEAYPTPLSPDGVRLPTKPGLTRWPIYQDGLVDVQDEGSQLIARLLTPRRREMI 293 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMDA 298 D CA GGKT L+ S + A DV+++RL L + R L + E D Sbjct: 294 CDFCAGAGGKTLALGALMRSTGSLYAFDVNEKRLAGLAPRMRRAGLSNVHPVAIKSEADP 353 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 FD VLVDAPC+ +GT+RR+PD+ W +++ + Q+++L VK G Sbjct: 354 RVRRLANKFDRVLVDAPCTGSGTLRRNPDLKWRLSPEELDRINDIQKRVLESASRLVKKG 413 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK---SIDMAMALSPEGWIRI 415 G +V++ CSL K+++++VV+ L P LVP+ + + + EG++++ Sbjct: 414 GRLVYATCSLLKRENQDVVEAFLAEHPGW-RLVPVKEVFEQQGIHFEPGQLERFEGYMQL 472 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P + + DGFFA L+R Sbjct: 473 LPHV--------NNTDGFFAAVLQR 489 >gi|294853353|ref|ZP_06794025.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella sp. NVSL 07-0026] gi|294819008|gb|EFG36008.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella sp. NVSL 07-0026] Length = 429 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKILAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|296136858|ref|YP_003644100.1| Fmu (Sun) domain protein [Thiomonas intermedia K12] gi|295796980|gb|ADG31770.1| Fmu (Sun) domain protein [Thiomonas intermedia K12] Length = 435 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 95/459 (20%), Positives = 164/459 (35%), Gaps = 63/459 (13%) Query: 5 MNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 M R + + +L ++R + +L + L + D+ ++ V LR L Sbjct: 1 MKPRDLLYTARDVLRDMLRFDAAADAVLSRLFRAKPQ--LGKTDRQILADTVYQVLRHLR 58 Query: 62 RIDAVLDFVLISSLPRKKYSLQQL-----LRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + LR+++ Sbjct: 59 L------------FQTLAATDESIGGAMELRLAI----------------LGWSGNAQSL 90 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + + R+ + + A +PEW L+ YG E Sbjct: 91 HAALSP-EQLDWRKRLLAQDAMALPEAVRWSLPEWLAAALQANYGAEYPALAQAMLRPAP 149 Query: 177 -YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDA 228 + + V+ + A + ++ L F EG VQD Sbjct: 150 LDLRVNVQKARREAVLDVFARLNLPAQPTPYSPWGVRLEGKPALQDLTVFREGWVEVQDE 209 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + L V+D CA GGKT ++ S ++ A DV+ RL KL+ L R Sbjct: 210 GSQLLAVLLAPRRGEMVVDFCAGAGGKTLALGAMMRSTGRLYAFDVADYRLAKLKPRLLR 269 Query: 286 LHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L E D D VLVDAPCS GT+RR+PD+ W + +DI + Sbjct: 270 SGLSNVYPVAIAHERDERVKRLAGKVDRVLVDAPCSGLGTLRRNPDMKWRQKPEDIAELT 329 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +KPGG +V++ CS+ +++ +V L + P E VP ++ + Sbjct: 330 TKQASILQSAATLLKPGGRLVYATCSVLPEENSGIVNAFLTAHP-DFERVPADTVLRQQG 388 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L +G +++ P+ DGF+A L+R Sbjct: 389 VDGEGLVTQGDLQLLPN--------RHATDGFYAAVLQR 419 >gi|332184460|gb|AEE26714.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf. novicida 3523] Length = 426 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 104/448 (23%), Positives = 191/448 (42%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L + LS++D+ V+ + R ++ Sbjct: 1 MNTRAIAAKAILEILDNKYSLLTLEQKLLSHN----LSEQDKSFVKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L L+ + V QI + YA ++ +V A +D + KLV Sbjct: 57 KIASLYLKQKTKITAKV---LIMLGVLQIFEVKQPYYATINESVS-ACKDLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + + +P+W + L Y KE + + ++I L Sbjct: 113 NGILREITRNINDITGIYKQNKAIDMPKWLSDTLIKQYPKEYLEIAQAINTKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QAKDTKKVLEYFDKNNIAYSFTNLKDCIKLGQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 N+ +LD CAAPGGKT+ A +TA+D+ +RLE LR NL R +I Sbjct: 233 IKANNDDKILDACAAPGGKTSHILESAPQADITAIDIIDKRLELLRENLARLSKNNNVNI 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTLPLSG-KFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILKKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +I P + DGF+ L++ Sbjct: 403 YQILPSQQDG--------DGFYYCLLKK 422 >gi|188993323|ref|YP_001905333.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. campestris str. B100] gi|167735083|emb|CAP53295.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas campestris pv. campestris] Length = 436 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 184/437 (42%), Gaps = 39/437 (8%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V + SL L + RD+ LV AI LR P D L L LP Sbjct: 23 VFDQGRSLKAELTAALPGVS----DPRDRALVEAICFAVLRRRPAYDVALRQWLERPLPP 78 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + L+ LL AQ+ L + +A + VE + R A +VN++LRR RE Sbjct: 79 RDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AGMVNAVLRRAQREGFP 137 Query: 138 LLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT-VKFDIETWAHKLNA 195 + A + P W +++L + + + + A ++P+++ + + + +L Sbjct: 138 AV---ADDAGWPSWLRKQLRADWGDQAEAIFVESARMAPMWLRVQRARVSPAEYVARLAE 194 Query: 196 VMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + + + LPGFA+G VQD SA VLD C Sbjct: 195 QGITAHTDPVLADAVRLDTAVPVSQLPGFAQGDVSVQDGSAQQVADALALAPAARVLDAC 254 Query: 250 AAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----DIIEMDAFDYCP 303 AAPGGK A ++TALDV RRLE++R + R D + Sbjct: 255 AAPGGKAAHLLERHPQLQLTALDVDARRLERVRQTVQRTAPDRTVRLHAADAADTAAWWD 314 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL+DAPCS+TG +RR PDVL R DDI Q +LL ++PGG +++ Sbjct: 315 GQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIDALCALQARLLDACWRTLRPGGQLLY 374 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 + CSL K++++ ++ L+ + + PL + + + + Sbjct: 375 TTCSLLKRENQMQIEAFLQRT-ADAQAQPLGAQFGHAAGAG----------------RQR 417 Query: 424 DGVSSGMDGFFAVALRR 440 DGFF L + Sbjct: 418 FAGEQQCDGFFYALLLK 434 >gi|59801095|ref|YP_207807.1| putative SUN-family protein [Neisseria gonorrhoeae FA 1090] gi|194098801|ref|YP_002001864.1| putative SUN-family protein [Neisseria gonorrhoeae NCCP11945] gi|239999092|ref|ZP_04719016.1| putative SUN-family protein [Neisseria gonorrhoeae 35/02] gi|240014001|ref|ZP_04720914.1| putative SUN-family protein [Neisseria gonorrhoeae DGI18] gi|240016442|ref|ZP_04722982.1| putative SUN-family protein [Neisseria gonorrhoeae FA6140] gi|240080561|ref|ZP_04725104.1| putative SUN-family protein [Neisseria gonorrhoeae FA19] gi|240115825|ref|ZP_04729887.1| putative SUN-family protein [Neisseria gonorrhoeae PID18] gi|240118123|ref|ZP_04732185.1| putative SUN-family protein [Neisseria gonorrhoeae PID1] gi|240121567|ref|ZP_04734529.1| putative SUN-family protein [Neisseria gonorrhoeae PID24-1] gi|240123672|ref|ZP_04736628.1| putative SUN-family protein [Neisseria gonorrhoeae PID332] gi|240125862|ref|ZP_04738748.1| putative SUN-family protein [Neisseria gonorrhoeae SK-92-679] gi|240128372|ref|ZP_04741033.1| putative SUN-family protein [Neisseria gonorrhoeae SK-93-1035] gi|254493870|ref|ZP_05107041.1| SUN-family protein [Neisseria gonorrhoeae 1291] gi|260440359|ref|ZP_05794175.1| putative SUN-family protein [Neisseria gonorrhoeae DGI2] gi|268594930|ref|ZP_06129097.1| SUN-family protein [Neisseria gonorrhoeae 35/02] gi|268596691|ref|ZP_06130858.1| SUN-family protein [Neisseria gonorrhoeae FA19] gi|268601501|ref|ZP_06135668.1| SUN-family protein [Neisseria gonorrhoeae PID18] gi|268603839|ref|ZP_06138006.1| SUN-family protein [Neisseria gonorrhoeae PID1] gi|268682303|ref|ZP_06149165.1| SUN-family protein [Neisseria gonorrhoeae PID332] gi|268684460|ref|ZP_06151322.1| SUN-family protein [Neisseria gonorrhoeae SK-92-679] gi|268686770|ref|ZP_06153632.1| SUN-family protein [Neisseria gonorrhoeae SK-93-1035] gi|291043654|ref|ZP_06569370.1| SUN-family protein [Neisseria gonorrhoeae DGI2] gi|293398957|ref|ZP_06643122.1| ribosomal RNA small subunit methyltransferase B [Neisseria gonorrhoeae F62] gi|59717990|gb|AAW89395.1| putative SUN-family protein [Neisseria gonorrhoeae FA 1090] gi|193934091|gb|ACF29915.1| putative SUN-family protein [Neisseria gonorrhoeae NCCP11945] gi|226512910|gb|EEH62255.1| SUN-family protein [Neisseria gonorrhoeae 1291] gi|268548319|gb|EEZ43737.1| SUN-family protein [Neisseria gonorrhoeae 35/02] gi|268550479|gb|EEZ45498.1| SUN-family protein [Neisseria gonorrhoeae FA19] gi|268585632|gb|EEZ50308.1| SUN-family protein [Neisseria gonorrhoeae PID18] gi|268587970|gb|EEZ52646.1| SUN-family protein [Neisseria gonorrhoeae PID1] gi|268622587|gb|EEZ54987.1| SUN-family protein [Neisseria gonorrhoeae PID332] gi|268624744|gb|EEZ57144.1| SUN-family protein [Neisseria gonorrhoeae SK-92-679] gi|268627054|gb|EEZ59454.1| SUN-family protein [Neisseria gonorrhoeae SK-93-1035] gi|291012117|gb|EFE04106.1| SUN-family protein [Neisseria gonorrhoeae DGI2] gi|291610371|gb|EFF39481.1| ribosomal RNA small subunit methyltransferase B [Neisseria gonorrhoeae F62] gi|317164383|gb|ADV07924.1| putative SUN-family protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 418 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 84/446 (18%), Positives = 163/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFRKHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFFGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQ + + L G Sbjct: 165 VLPLLQAESPDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQGEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E +++ L P E P+N A ++ + L ++R+ Sbjct: 345 KPQGCLVYATCSVLPEENELQIKRFLSEHP---EFEPVNCAEL-LQNLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418 >gi|209517450|ref|ZP_03266291.1| Fmu (Sun) domain protein [Burkholderia sp. H160] gi|209502104|gb|EEA02119.1| Fmu (Sun) domain protein [Burkholderia sp. H160] Length = 419 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 95/443 (21%), Positives = 158/443 (35%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V+R + L ++ ++ V LR + + S Sbjct: 14 LLAEVLRLNGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRMA-------LLGLMQ------------------TVGRSALKPFVTEAEATWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + +P+W + L + + ++ A P +DL + Sbjct: 107 KIDPESLPLRIRLNLPDWICQALGTRFEGAELAQLAAALNYPAPLDLRANPIKASRDDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L+ + G L + L F +G VQD + + L Sbjct: 167 GALSKAGIEAGATPFAPLGVRVVGKPALTKLDAFQQGWLEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT + S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAAMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + I + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESIAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +VQ+ L P LVP++ + + L ++ + P Sbjct: 347 GGRLVYATCSILEAENEAIVQQFLADHP-DFALVPVHEVLAE---QRIELEMGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLER 417 >gi|116622296|ref|YP_824452.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076] gi|116225458|gb|ABJ84167.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076] Length = 360 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 105/435 (24%), Positives = 160/435 (36%), Gaps = 87/435 (20%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+ + +L V + LL L RD L IV LR+ ++D Sbjct: 5 AARIAAFDILQLVESGGYASDLLLART------ADLDSRDAGLASEIVFGVLRYRAQLDF 58 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ S + ++ LR+++ QI YL V +A V +VE KR ++ A V Sbjct: 59 LIIHYAGRS-RKLDPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRARKT-SAAGFV 116 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 N+IL R + PEW R E YG+ L I+ A + + + Sbjct: 117 NAIL-RQVDRDPVIWPAREIEYSCPEWLLARWEREYGETAALGIAQAALREPEKYVRIGT 175 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 E QD A V L Sbjct: 176 AGE------------------------------------RTQDIGAQSIVPLLDLQPGQR 199 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 LDLCAAPG KTAQ + +G + A D+ RL +L+ L ++ Sbjct: 200 FLDLCAAPGNKTAQALEAGVQAVACDLHFHRLVQLKP------LTPNLVVVDGTRPLPFA 253 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FD +LVDAPCS TGT+ R+P++ W D+ Q LL +S + PGG +V+S Sbjct: 254 ARFDRILVDAPCSGTGTLGRNPEIKWRLTPADLADLHARQSALLANALSLLAPGGTLVYS 313 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CSL+ +++E V ++ + E+ Sbjct: 314 TCSLEPEENEGV-----------------------------------AVQARVERTEQRL 338 Query: 425 GVSSGMDGFFAVALR 439 DGF+A ++ Sbjct: 339 PGREAGDGFYAAVIK 353 >gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 450 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 182/455 (40%), Gaps = 38/455 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + L V + +S L+ + A + + + L A V ++ +ID +++ Sbjct: 11 EVVADALMLVEERELSSKHALERVFKKVAGKDREKA-RGLAHAYVFEIEKWRAKIDFIIN 69 Query: 69 FVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL S + L LLR+ +I + V D + K + AK VN++ Sbjct: 70 SVLKGSTVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKGHF-DFSRAKFVNAL 128 Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + + + ++ ++ P W+ E +G + + + + Sbjct: 129 MHEIEKFDVERALKRLKERDRIEWLSVRFSHPRWYVEYAVELFGYDEAVRLLLSNNKAQR 188 Query: 178 IDLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + + A+ +++ E + L + +G + +QD Sbjct: 189 YYVRANTLKTDVDSLRDYLEENGVRTALTPLPDVLKILEYKTPVTRLNWYKQGKFVIQDL 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +++ + VLDL AAPG KT + + ++ A+D S RL +++ + Sbjct: 249 ASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMRMKEKMKL 308 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + ++ D + K+ FD +++DAPCSS+GT R+ P+V W D I + QR Sbjct: 309 LGIKNVKLVHADGQSFRDKEKFDKIILDAPCSSSGTYRQFPEVKWRFDEKKIKRIINVQR 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L ++ GG + +S CS+ + EE V L +N + ID Sbjct: 369 NMLRNAHENLRDGGEMTYSTCSIRIDEDEENV------------LFAINRVGLELIDYPF 416 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G++ I D + + + FF L++ Sbjct: 417 SWGDRGFLEI-GDKVFRAWTHRHDCNSFFIAKLKK 450 >gi|220919194|ref|YP_002494498.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1] gi|219957048|gb|ACL67432.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1] Length = 455 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 122/458 (26%), Positives = 178/458 (38%), Gaps = 44/458 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L V + L+ A L R+ L +V TLR +DA Sbjct: 12 ARGIAFDVLRRVEEGGAYASR--ALDAALGAAGALDPREAGLATELVYGTLRRALALDAA 69 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + + LR+ Q+L L +A V V AK R A VN+ Sbjct: 70 LAPHSRRALAELDPAARVALRLGAYQLLVLGTPAHAAVGETVALAKAVDHGR-AAGYVNA 128 Query: 127 ILRRVSREKIELLQ---------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +LR +SR +A +P W E + G LA++ A +P Sbjct: 129 VLRSLSRAARFPDPPALEADPAGHVAAAEALPRWVAEEWVGWLGAGEALALARAMNAPAP 188 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLP----GFAEGVWWVQDA 228 + + D E + A L S+ L G V Sbjct: 189 LCVR-TPDREALLARARAAGLAAAPAARAPGGVVLTGASVGELARAAGGVPFQVQDEAAQ 247 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 ++ VLD CAAPGGK L GA+V A+++ R+ ++L R Sbjct: 248 LVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAIELHPRKADELAREAAR 307 Query: 286 LHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L A ++ DA P FDAVLVDAPC+ GT+RRHP++ R D+ + A Sbjct: 308 RGLPAVRVVCADAGKPIPGLEPGSFDAVLVDAPCAGLGTLRRHPELKLRRAPGDLPRMAA 367 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QRK+ L + +PG VV+S CSL + + EVV+ +L P + + Sbjct: 368 LQRKIALNAARYARPGAPVVYSICSLSRAEGPEVVETLL---GEGFRRAPPPAGFP---- 420 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A L G + P G DGF+A L R Sbjct: 421 -ADVLDARGDLLTLPS--------RHGTDGFYAARLVR 449 >gi|294786452|ref|ZP_06751706.1| Sun protein [Parascardovia denticolens F0305] gi|315226022|ref|ZP_07867810.1| ribosomal RNA small subunit methyltransferase B [Parascardovia denticolens DSM 10105] gi|294485285|gb|EFG32919.1| Sun protein [Parascardovia denticolens F0305] gi|315120154|gb|EFT83286.1| ribosomal RNA small subunit methyltransferase B [Parascardovia denticolens DSM 10105] Length = 540 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 109/537 (20%), Positives = 185/537 (34%), Gaps = 108/537 (20%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K ++ R ++ L V R + L+ E + L RD+ V +V TLR+ Sbjct: 16 KKDLSPRSIAWKSLIRVHRNQAFSNLLVPQELSSFSPDELGGRDRAAVTDMVYGTLRWQG 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-NRHF 120 +DAV+ V L R + + R+ V Q+L+L DYA V V +R + Sbjct: 76 FLDAVIADVSFRPLKRIEIPVLDAARLGVYQLLFLGSPDYAAVSQTVGLLRRGGRSDARA 135 Query: 121 AKLVNSILRRVSREKIELLQ--------------RIAGISIIPEWFKERLENFYG----- 161 A VN++LR+V+ + + R+A P W +L + Sbjct: 136 AGFVNALLRKVATRSRQEWEAVLTSRIPKADSDARLALRYSHPNWVVGQLRRSWEAAAYE 195 Query: 162 ---KERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV------------------- 196 +++ A+ A P + L + E +L + Sbjct: 196 DRADDQLAALLSADNEPADVTLCARPGLISREELIAQLEGISAGRAGSDGQAVPGRIVWG 255 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS------------------------- 231 L+ + +P +G+ V+D + Sbjct: 256 ETSFSPYGLRIKGVNPHDIPAVRQGLAGVEDEGSQLAALAVADVDKAAGFPTDLPTDFPV 315 Query: 232 -----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG---------AKVTALDVSKRRLE 277 L + LD+CA PGGKTA L + A + + R + Sbjct: 316 DLPADSQSDLTTSRQAERWLDMCAGPGGKTALLAACALSRSNSGRLTTLLANEPTHHRAD 375 Query: 278 KLRCNLDRLHLYA----------EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325 +R NL A E + E D FD +LVDAPCS G++RR Sbjct: 376 LVRDNLCAFTGMAPASSAAPSIIEGVEEKDGRQLGDLYPQAFDRILVDAPCSGLGSLRRR 435 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 P+ W + ++I + Q +LL + PGG + + CS +++ VV L Sbjct: 436 PESRWRKKPEEIASLSLLQGQLLDSAYEALAPGGYLAYVTCSPVLEETRLVVDAFLGRHQ 495 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L A+ + A G +++ + G D F +R+ + Sbjct: 496 DLIRL-DARQAFPSGTPLPAAP---GDVQLFEQV--------HGTDQMFISLMRKAV 540 >gi|308389468|gb|ADO31788.1| SUN-family protein [Neisseria meningitidis alpha710] Length = 418 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418 >gi|115352607|ref|YP_774446.1| Fmu (Sun) domain-containing protein [Burkholderia ambifaria AMMD] gi|170697696|ref|ZP_02888784.1| Fmu (Sun) domain protein [Burkholderia ambifaria IOP40-10] gi|172061469|ref|YP_001809121.1| Fmu (Sun) domain-containing protein [Burkholderia ambifaria MC40-6] gi|115282595|gb|ABI88112.1| Fmu (Sun) domain protein [Burkholderia ambifaria AMMD] gi|170137444|gb|EDT05684.1| Fmu (Sun) domain protein [Burkholderia ambifaria IOP40-10] gi|171993986|gb|ACB64905.1| Fmu (Sun) domain protein [Burkholderia ambifaria MC40-6] Length = 420 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 98/446 (21%), Positives = 159/446 (35%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFTGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q L + F + Sbjct: 72 PARRLT-------LLGLMQTL------------------GRNALKPFVSDTEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W + L + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRVRTNLPDWIYQALSARFDAEELAQLAAALNYPAPLDLRANAQKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G +V P F EG VQD + + L Sbjct: 167 DALRAEGIDAGETPFAPQGVRVVGKPALTRLQVFQEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLTKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIEELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P V L A D +A+ ++ + P Sbjct: 347 GGRLVYATCSVLHAENEAIVEQFLADHPEFV----LVPAQQVLADQRIAIETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|309378839|emb|CBX22544.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 419 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 11 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 64 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 65 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 105 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 106 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQAAPLDIRVNTLKGKRDK 165 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 166 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 225 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 226 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 285 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 286 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 345 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 346 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 401 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 402 --------NSGEHQTDGFFAAVLQRK 419 >gi|332702662|ref|ZP_08422750.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552811|gb|EGJ49855.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 433 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 99/422 (23%), Positives = 158/422 (37%), Gaps = 29/422 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +S + + LD + R L+ RD L + LR R+DA Sbjct: 8 PARRAALEAVSKSLNTSTDVQAALDTQITA---RRLAPRDIGLATELTYGYLRLKSRLDA 64 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 +LD L + + ++ +L ++ ++ YLD V YA V+ AV+ K D + +K+ Sbjct: 65 LLDHFL-RAPGKLPARVRLILGLAAYELSYLDRVPAYASVNWAVDAVKADFG-QGLSKMA 122 Query: 125 NSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 N +LR + + ++ P W E G+E LA+ A Sbjct: 123 NGVLRSVERLGADALNPDFFRQGSRDETGFLSRYYSCPRWIVELWLGERGREAALALLQA 182 Query: 172 CISPLYIDLTVKFD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 I P + L V + A K + + + V Sbjct: 183 QIVPPAVSLRVNAAKSGAQALRDELAAKPECLSANGWTLAFAPGSRPVEDSVLIQGLVSR 242 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNL 283 AS L V D C GGK LI G V A DV+ RL +L Sbjct: 243 QSAASQLALAALEPAGWPTPVWDCCCGRGGKALSLIEKGIAPVWASDVTFARLRQLPVES 302 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVL-VDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL L A A P + VDAPCS G + R PD W R D+ Sbjct: 303 RRLGLPAVSTFLARADAPAPLAAQPGTVLVDAPCSGLGVLSRRPDSKWKRSPTDLPGLTA 362 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP-LNSAYWKSI 401 Q +L ++ ++PGG + + C++++ ++EE ++ +LR L+ + W Sbjct: 363 LQSGILEHALAALRPGGRLAYITCTVNRAENEERIEMLLREHSGARLLLSGASPLDWPLG 422 Query: 402 DM 403 + Sbjct: 423 EF 424 >gi|242277628|ref|YP_002989757.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638] gi|242120522|gb|ACS78218.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638] Length = 427 Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 152/414 (36%), Gaps = 34/414 (8%) Query: 1 MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK + R V+ ++ + +LD + L RD+ V I+ L Sbjct: 1 MKKTNSLPGPRGVAYECVTRSLDGGADAQAVLDNALTAAK---LDGRDRGFVTEILYGYL 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 R R+ +VL+ L + ++L ++ +IL++DV YA VD V+ AKR Sbjct: 58 RMRLRLQSVLNCFLSRP-DGLPAPILRVLGMAAYEILHMDVPAYASVDWGVDSAKRLSRG 116 Query: 118 RHFAKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + L N++LR+ R ++ ++ PEW E + YG+++ Sbjct: 117 K-LGGLANAVLRKVARLAEDGADEDFFRRNSDSEIEFLSAYYSCPEWIVELWVDSYGRDK 175 Query: 165 VLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP---TGGIRLKELPESIVSLPGF 218 +A I P + + + A +L G + G Sbjct: 176 AEQYLEAQICPPAAGFVLDTKSNEAKAAAEQLLEENDYIASDGQAFAFYSGYWPQAFNGL 235 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGA-KVTALDVSKRRL 276 E Q +A + + G + D C+ GGK+ L + A D RRL Sbjct: 236 KES-VTRQSYAAREALSVLGPSEWPTPVWDGCSGRGGKSRFLHSKNISPIIASDPHARRL 294 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 L+ R K+ L+D PCS G + R PD + R +D Sbjct: 295 AALK----REVPSVASFRASAINPPLAKESIGTALLDVPCSGLGVLSRRPDTKFKRTPED 350 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + Q ++L ++ GG + + C+L+ ++E + L+ V L Sbjct: 351 VDSLVHLQSRILDNTWETIRKGGRLAYITCTLNPAENEGQIGAFLKRHKDAVPL 404 >gi|313668485|ref|YP_004048769.1| SUN-family protein [Neisseria lactamica ST-640] gi|313005947|emb|CBN87404.1| SUN-family protein [Neisseria lactamica 020-06] Length = 418 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 165/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + ++ + Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSSETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KTQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LAGLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|306845652|ref|ZP_07478221.1| Fmu (Sun) domain-containing protein [Brucella sp. BO1] gi|306273973|gb|EFM55800.1| Fmu (Sun) domain-containing protein [Brucella sp. BO1] Length = 429 Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 157/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER + A + +DL V T Sbjct: 107 RAAWQNRDLATAPAHIQADVPEWCIPSLEELFG-ERWVPEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q +L Sbjct: 286 VYGGLDELEPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQHDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTCQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|332975438|gb|EGK12330.1| RsmB/NOP family methyltransferase [Kingella kingae ATCC 23330] Length = 421 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 168/447 (37%), Gaps = 51/447 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ +L D+ L + D+ + +R + + L Sbjct: 10 ATVLAQMLTFADPADVVLSNYLRDNR--KLGRADRHEIAETAFAAIRHYQK----IAAAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + D + F L + Sbjct: 64 RRPHVQARKAALAALILG----------RSVNISQIEDLLNEDDNEKEF-------LSSL 106 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +PEW E L+ E++L + P +D+ V + Sbjct: 107 KSRKTEFASSLHTAAELPEWLIEVLQKHDSDEQILQFGRSVAQPAPLDIRVNTLNGKRDK 166 Query: 189 WAHKL-----NAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 +L NA+ P ++ + + P F +G VQD + + QL G Sbjct: 167 ILAQLQTEFPNAIATPFAPHGIRFNDKPALNKHPLFLDGTIEVQDEGSQLLAQLVGAKRG 226 Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGKT + + ++ A D++++RL L+ + R L E Sbjct: 227 EIIVDFCAGAGGKTLALGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPEKIGSE 286 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q+ ++ V Sbjct: 287 HDPRIARLHGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETLANLLKQQQSIVQAASQLV 346 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V++ CS+ +++E V + L+++P L + ID+ Sbjct: 347 KSGGRLVYATCSVLPEENEMQVAQFLQNNPDFELLNCAELLATQKIDLDT---------- 396 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++D DGFFA L+R Sbjct: 397 --GEFLRMDTAVHNTDGFFAAVLQRKA 421 >gi|332670476|ref|YP_004453484.1| Fmu (Sun) domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339514|gb|AEE46097.1| Fmu (Sun) domain protein [Cellulomonas fimi ATCC 484] Length = 568 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 108/523 (20%), Positives = 169/523 (32%), Gaps = 94/523 (17%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +SG AR + L V +L + R + RD + TLR Sbjct: 58 RSGDAARRAAFDTLRAVAEGDAYANLVLPPMLRE---RGVQGRDAAFATELAYGTLRLRG 114 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 R DAV++ + R + LLR+ Q+L + V +A V V A+ A Sbjct: 115 RYDAVVELAAARPVDRIDAPVLDLLRLGTHQLLGMRVPAHAAVSETVGLAREVTG-AGPA 173 Query: 122 KLVNSILRRVSREKIELLQRI----------------AGISIIPEWFKERLENF-----Y 160 + VN++LR VSRE + A + P W L Sbjct: 174 QFVNAVLRAVSREPWPRWEERIGDAADPDGDDPVARLAVVGSHPAWVVRALRESLVGNGR 233 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG------------------- 201 + + + +A + + L + + T A A G Sbjct: 234 AADEITGLLEADNTAPLVTLVARPGLATTAELSPAASSAGGGVPDGPAPTGAAGTTAGTT 293 Query: 202 ----------------------------GIRLKELPESIVSLPGFAEGVWWVQDASAS-- 231 L +LP E VQD + Sbjct: 294 GTTAGATPGAPEGRPAATPGATARGTLSPTALVLPGGDPAALPAVREARAGVQDDGSQLV 353 Query: 232 --IPVQLFGTLNNLSVLDLCAAP----GGKTAQLIVSGAKVTALDVSKRRLEKLRCN--- 282 + LDLCA P A GA++ A +V R ++ + Sbjct: 354 ALALAAAPLDGPDDRWLDLCAGPGGKAALLGALAAQRGARLVANEVQPHRARLVQQSLRA 413 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + R + + D FD V+VDAPC+ G +RR P+ W R D+ Sbjct: 414 VPREAVEDVRTGDGRDVDQQEPGAFDRVMVDAPCTGLGALRRRPESRWRRTPADLAPLTA 473 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPVELVPLNSAYWK 399 QR+LL + V+ GG+V + CS ++ VVQ VLR + + VE + + Sbjct: 474 LQRELLASALHAVRVGGVVAYVTCSPHLAETRLVVQDVLRAVGRAGLTVERLDTPAVVRA 533 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L +++ P + G D LRR Sbjct: 534 VATRDVELPDRDDVQLWPHV--------HGTDAMHLTLLRRTA 568 >gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis] Length = 515 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 101/426 (23%), Positives = 165/426 (38%), Gaps = 50/426 (11%) Query: 8 RLV-SSHLLSCVMRKRISLTCLLDLEYGDS--------------AFRLLSQRDQILVRAI 52 R + LL + + L + L R+ LV I Sbjct: 91 RAASAVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLGFRTNPLDARNTRLVTDI 149 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110 V +R+ +D ++ + ++ + LQQ+LR+ V +I+ L + YAVV+ V Sbjct: 150 VAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEIVKLGMPPYAVVNENVTL 209 Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELL--------------QRIAGISIIPEWFKERL 156 R +VN ILRRV+ ++ + + + ++ P W R Sbjct: 210 -ARAALRAGAGNMVNGILRRVASDREKDMLPLPKVEGDDRSKARALSVKYSHPVWMIRRW 268 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDI-----------ETWAHKLNAVMLPTGGIRL 205 + G+E + + + SP L + + T +RL Sbjct: 269 MTYLGQEGAIQLMEWNNSPPSFSLRANSGRGVSRDDLVLLLKKLNVQHELSPHMTEFVRL 328 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 +S++ EG+ VQD A + V + +++D CAAPGGK + Sbjct: 329 STGLQSVIQAGLLKEGMCAVQDEGAGLVVSVVDPQPGETIIDCCAAPGGKALFMASRLQG 388 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSST 319 V A+DV++ RL L L D D VL+DAPCS Sbjct: 389 QGSVIAIDVNQGRLRVLEEAAKVQALEGVVNACQDDIRSFAVGASIRADKVLLDAPCSGL 448 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G + + PD+ W R D+ + Q +LL VKPGGI+V+S CS+D +++E V+ Sbjct: 449 GVLCKKPDMRWKRTLKDLEQLILLQDELLDAASLLVKPGGILVYSTCSVDPGENKERVES 508 Query: 380 VLRSSP 385 L P Sbjct: 509 FLTRHP 514 >gi|302879579|ref|YP_003848143.1| Fmu (Sun) domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582368|gb|ADL56379.1| Fmu (Sun) domain protein [Gallionella capsiferriformans ES-2] Length = 417 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 95/448 (21%), Positives = 166/448 (37%), Gaps = 56/448 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L ++ L + + + ++ +V LR ++A D Sbjct: 10 LVILALRTILPLEHPADTTLRYFFKNER---IGSNERAIVAETAFGVLRHRLLLEAACDG 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++ R L L++ + ++ D A A Sbjct: 67 --KATPRRMA--LAYLVKFGGYNLR--EIQPVLKRDEAEWLATAKSL------------- 107 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 Q ++ + +PEW E++ Y E +L I A +D+ V + Sbjct: 108 ------QYEGQPLSIQAELPEWLIEKMRASYSDEDILTIGQAMQLGAPLDIRVNTLLAKR 161 Query: 190 AH--------KLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 K++A P I ++ + + F G VQD + + L Sbjct: 162 EEVLLQLEAQKIDATATPYSPIGIRLREKIPLNKDELFTTGKVEVQDEGSQLLGFLLAPK 221 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 N V+D CA GGKT L + S ++ A+DVS++RL L+ L R Sbjct: 222 RNDMVVDFCAGAGGKTLMLSALMNSQGRLYAMDVSEKRLANLKPRLKRSGASNIQPMLIA 281 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ + + I + Q +L Sbjct: 282 HENDLKVKRLSGKIDRVLVDAPCSGLGTLRRNPDLKFRQSPQSIAELNQKQTAILASASR 341 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V++ CS+ ++++ +V+ L + P L + I + M ++ Sbjct: 342 LLKKGGRLVYATCSILPEENQHIVEAFLAAHPDYKLLPAGEVLQQQKIPLEMGD----YL 397 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P++ DGFFA L R+ Sbjct: 398 ELRPNL--------HATDGFFAAVLERI 417 >gi|163844534|ref|YP_001622189.1| hypothetical protein BSUIS_B0363 [Brucella suis ATCC 23445] gi|163675257|gb|ABY39367.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 429 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 159/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDAHDARALAFGG--LLADDGMDIEMVD------VALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|167737507|ref|ZP_02410281.1| rRNA small subunit methyltransferase B [Burkholderia pseudomallei 14] Length = 420 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 98/446 (21%), Positives = 165/446 (36%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRRMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSALKPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERLGADELAQFAAAVNYPAPLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG+ VQD + + L Sbjct: 167 DSLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGLIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETVDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG + ++ CS+ + ++E +V L + P ELVP + + +AL ++ + P Sbjct: 347 GGRLAYATCSVLEAENEAIVSAFLAAHP-AFELVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|326402861|ref|YP_004282942.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301] gi|325049722|dbj|BAJ80060.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301] Length = 426 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 98/447 (21%), Positives = 165/447 (36%), Gaps = 45/447 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + LL + R + + F + D+ + IV LR R+ L+ Sbjct: 8 QAAIELLGTIEADRRPADAIANDFLRTRRF--IGGGDRREIGEIVWSVLRARRRLGWWLE 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 V + PR L LRV + + A + + A A ++ Sbjct: 66 RVGAEATPRL---LIASLRV----LTGMPAPRVAGLFGVMRFAP----PPLEAAERRALD 114 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + A +P++ L +G +++ + A + P +DL V T Sbjct: 115 RLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFG-DKLESECAALMQPAPLDLRVNLLKAT 173 Query: 189 WAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L A+ +++ F +G+ +QD + + L G Sbjct: 174 RDEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGA 233 Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V D CA GGKT A + + + A DVS RL+ L R ++ + Sbjct: 234 QPGMRVADYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLL 293 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + +K FD VLVDAPC+ GT RR+PD D+ + Q +L Sbjct: 294 ESGDKWVKRQEKKFDRVLVDAPCTGAGTWRRNPDARLKLTETDLAELTAKQAAILDAAQR 353 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +V++ CS+ + ++E ++ L +VP+ + + Sbjct: 354 LVKPGGRLVYATCSVLRPENEAQIESFLARH-SDFAIVPVADGLPAYLHGD-------ML 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 R++P G DGFFA + R Sbjct: 406 RLSP--------ARDGTDGFFACRMER 424 >gi|254695468|ref|ZP_05157296.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Brucella abortus bv. 3 str. Tulya] gi|261215854|ref|ZP_05930135.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260917461|gb|EEX84322.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 429 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 97/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERGVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAEHARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|171057430|ref|YP_001789779.1| Fmu (Sun) domain-containing protein [Leptothrix cholodnii SP-6] gi|170774875|gb|ACB33014.1| Fmu (Sun) domain protein [Leptothrix cholodnii SP-6] Length = 418 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 93/444 (20%), Positives = 156/444 (35%), Gaps = 54/444 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL V+R ++ + R L R++ + V +R R + Sbjct: 12 ELLHEVLRFTQPADAVVSAFFR--RQRALGVRERHTLAETVYAVVRERLRYQYLAKS--- 66 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 ++L+ ++ + D + E + A + L + Sbjct: 67 ----GTGSLERRLILLA-----------WQGSDSYMHAVATPDELKWVATVKLLSLAKQP 111 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETW 189 +PEW E L ++ ++++ + P +DL + Sbjct: 112 DNL---------RHNLPEWLAEAL-KQELGDQFWPLAESLMKPAGLDLRANLLKSRRDEV 161 Query: 190 AHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L + T + F G VQD + + L Sbjct: 162 RATLAEEGIATEPTPFSPWGLRTTGKPTLNRTETFTRGEVEVQDEGSQLLALLTEARRGE 221 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT ++ + ++ A DVS RL L+ L R L E Sbjct: 222 MVVDFCAGAGGKTLALGAMMRNTGRLYAFDVSAHRLAALKPRLARSGLSNVYPAGIAHER 281 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D D VLVDAPCS GT+RR+PD+ W + + + Q +L +K Sbjct: 282 DDRIKRLGGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQSVAELVAKQTAILASASRLLK 341 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V++ CSL K ++EE+ + P L +++ A L+ G++R+ Sbjct: 342 PGGRLVYATCSLLKAENEEIAAAFSAAHPDFEPLDAAEVLARQNVPDAATLTSNGYLRLW 401 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P DGFFA +R Sbjct: 402 PH--------QHATDGFFAAVWQR 417 >gi|289450433|ref|YP_003475239.1| putative ribosomal RNA small subunit methyltransferase B [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184980|gb|ADC91405.1| putative ribosomal RNA small subunit methyltransferase B [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 498 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 103/490 (21%), Positives = 179/490 (36%), Gaps = 70/490 (14%) Query: 6 NARLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 N R ++ ++ + S +L LS ++ L AIV T+ +L I Sbjct: 13 NGREAAAQVIYHCLALHDMASFDPVLRQTV-----NFLSLPERNLAVAIVYGTMTYLYTI 67 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAK 122 D VL L + L+ +LR +V Q+ Y + + AVV+ + K+ ++ Sbjct: 68 DYVLGKHCKIGLEKLDPWLKSVLRTAVWQLRYSRNLPETAVVNECCKLVKKY-RHQGMVD 126 Query: 123 LVNSILRRV-SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 N+++R S +A + + +G E+ A + P + + Sbjct: 127 FANAVMRAEVSHPVCIPPGNLALQYSLLPELAGYFKKRFGIEQAKIELQALLMPPDLTVR 186 Query: 182 VKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 V +N A ++L S+ LP F G ++VQ A Sbjct: 187 VNRCRSNVISLINELKLYSVAAEAHPYFDHVLKLNLKGASLTELPAFKVGKFFVQGIGAM 246 Query: 232 IPVQL----FGTLNNLSVLDLCAAPGGKTAQ------------------------LIVSG 263 + + +N V+DLCAAPGGK Sbjct: 247 LVGMIAPIPTHPDDNHLVIDLCAAPGGKITHVLERLLLSNKSPSSGNLPTSTYTNEQSIA 306 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA------VLVDAPCS 317 + V A D+++ RL+ L NL RL L +DA D + + V+ D PCS Sbjct: 307 SFVEAWDINQARLDALIDNLSRLGLPEIKTAVVDATDRKAEPIIRCSGKAALVIADVPCS 366 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G + R P++ W + + I + Q ++L G +++S C+L+ ++E V Sbjct: 367 GLGVLARKPELRWNMNYEKICRLLPLQAEILRTASLLTAAQGYLLYSTCTLNWDENEGQV 426 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-------EGWIRITPDMLEKIDGVSSGM 430 L S+ E P++ + + L G + + P G Sbjct: 427 NTFLESAEGQ-EFTPVDLTPYLPVSFVDRLDEVERKNLSAGKLNLLP--------ARDGC 477 Query: 431 DGFFAVALRR 440 +GFF L+R Sbjct: 478 EGFFISLLQR 487 >gi|78067310|ref|YP_370079.1| methylase [Burkholderia sp. 383] gi|77968055|gb|ABB09435.1| methylase [Burkholderia sp. 383] Length = 421 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 97/445 (21%), Positives = 160/445 (35%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q A R+ + ++ L Sbjct: 72 PARRLT-------LLGLMQ-----------------TAGRNALKPFLSDTESAWLE-HVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + + + +P+W + L + + + ++ A P +DL + Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSARFDADELAQLAAALNYPAPLDLRANVQKASRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G +V P F EG VQD + + L Sbjct: 167 DGLRAEGIDAGATPFSPFGVRVVGKPALTRLRLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-EFVLVPAQKVL---DDQRIELETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|186475344|ref|YP_001856814.1| Fmu (Sun) domain-containing protein [Burkholderia phymatum STM815] gi|184191803|gb|ACC69768.1| Fmu (Sun) domain protein [Burkholderia phymatum STM815] Length = 419 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 99/443 (22%), Positives = 157/443 (35%), Gaps = 55/443 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLADVLKFTGPADAATSRFFRAHP--KLGHGERGVIAEAVFAVLRRRMEFAHLAESGAGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q A V A+ S+ R+ Sbjct: 72 PNRRLA-------LLGLMQ-TAGRTALKPFVSE----AENVWLEHVAKIDPQSLPLRI-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189 +P+W + L N + E + ++ A P +DL + Sbjct: 118 -----------RMNLPDWIYQALSNRFEAEELAHLAAALNYPAPLDLRANPIKASRDDVL 166 Query: 190 -----AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 A A + L F G VQD + + L Sbjct: 167 GVLSKAAIEAAATPYAPLGIRVVGKPPLTKLDAFQSGWLEVQDEGSQLLCSLVAPKRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 ++D CA GGKT ++ S ++ A D+S+RRL KL+ L R L + + E D Sbjct: 227 IVDFCAGAGGKTLALGAMMRSTGRLYAFDISERRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPESIAELTPKQLSILTSAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E VVQ+ L + ELVP + + L ++ + P Sbjct: 347 GGRLVYATCSILDAENEGVVQQFLAAH-SDFELVPARDVLAE---QRIDLEMGDFLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 DGFFA L R Sbjct: 403 H--------RHSTDGFFAAVLER 417 >gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f. nagariensis] gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f. nagariensis] Length = 426 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 106/439 (24%), Positives = 179/439 (40%), Gaps = 55/439 (12%) Query: 44 RDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV 103 RDQ LV+ +V R R+D V+ + + + ++Q+LR+ V ++ +A Y Sbjct: 1 RDQRLVKELVAGVTRLRRRLDFVVANLTQQTPADMESGVRQVLRLGVYELTERRLAPY-A 59 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRV---------SREKIELLQRIAGISIIPEWFKE 154 ++ V+ AK VN +LR ++ L+ +A P W Sbjct: 60 LNEHVQLAKVVSGP-GAGSFVNGVLRSAARQVEAGTLPTPEVRPLRLLALQHSHPNWLVS 118 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDI-----ETWAHKLNAVM--------LPTG 201 R + +G++ A+ P + V E +L AV +PT Sbjct: 119 RWLSRFGRQGTEALLRRNNMPPIYTVRVNTLRAGASVERLLGQLAAVGVEAEASPLMPTE 178 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258 IR++ + +++ ++G VQD SA + V L +LD CAAPGGKT Sbjct: 179 FIRIRSGLQKLLAEGFVSDGSLVVQDESAGLVVSLLDPQPGERLLDCCAAPGGKTLFAAA 238 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE----------DIIEMDAFDYCPKKLFD 308 + +TALDVS RL LR + + + + D +D Sbjct: 239 RMRGHGSITALDVSAPRLGALRRAAELAGVEDMVTTRAVDLRRRVRQPDTATMW---QYD 295 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VL+DAPC+ TG + + D+ W R + + + Q++LL V PGG++V+S C + Sbjct: 296 KVLLDAPCTGTGVLAKRADLRWRRTPEQLYELVALQQELLEAAACLVAPGGVLVYSTCDI 355 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPL-------NSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++++ +E V+ L P + S ++ EG++ P + Sbjct: 356 EEEEDQERVRTFLERHPEFEVEPAAAAAVPSGRRGFGASWVPPSVVTAEGFMATLPHV-- 413 Query: 422 KIDGVSSGMDGFFAVALRR 440 DG FA LRR Sbjct: 414 ------HDTDGAFAARLRR 426 >gi|296314457|ref|ZP_06864398.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria polysaccharea ATCC 43768] gi|296838747|gb|EFH22685.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria polysaccharea ATCC 43768] Length = 418 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESGDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDTRIARLSGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILYAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSAKHQTDGFFAAVLQRK 418 >gi|167561858|ref|ZP_02354774.1| NOL1/NOP2/sun family protein [Burkholderia oklahomensis EO147] gi|167569080|ref|ZP_02361954.1| NOL1/NOP2/sun family protein [Burkholderia oklahomensis C6786] Length = 420 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 100/446 (22%), Positives = 165/446 (36%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFVGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + A + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTAGRSALKPFVTDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERVSADELAQFAAAVNYPAPLDLRANALKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DGLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRESVAELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V + L + P LVP N + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPANRLLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|225076733|ref|ZP_03719932.1| hypothetical protein NEIFLAOT_01784 [Neisseria flavescens NRL30031/H210] gi|224951931|gb|EEG33140.1| hypothetical protein NEIFLAOT_01784 [Neisseria flavescens NRL30031/H210] Length = 419 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLTAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------PDEEETKFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESTDAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418 >gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral taxon 014 str. F0314] gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral taxon 014 str. F0314] Length = 425 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 191/457 (41%), Gaps = 59/457 (12%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 A+ +++ ++ V K +L +L +A L+ ++ ++ I R+L + + Sbjct: 4 AQQLAAESIAAV-AKGRNLQDVLAAI--RAAHPELTAQENGALQDIAYGCQRYLGSLKHM 60 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L + L+ LL ++ Q+ Y A +AVV+ AVE + + F N+ Sbjct: 61 LAQMLKKPID--NPQLESLLLAAMYQLHYTRNAPHAVVNEAVESIAKIGRGQ-FRSFANA 117 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR RE+ + + +P W+ L+N Y K I+ A S + L V Sbjct: 118 ILRRFLRERQKLEALCKKDDVAKHNLPLWWVAYLKNHYPKHW-HNITTALQSHPPMALRV 176 Query: 183 KFD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 +E A + A E + LPGF++G+ VQD A Sbjct: 177 NRRHGNAEVYLEKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGLVSVQDFGAQQAAY 236 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291 L + +LD CAAPGGKT ++ + VTALD+ RL+++ NLDRL Sbjct: 237 LLNPKDGERILDACAAPGGKTGHILELADCHVTALDIDAGRLKRVGDNLDRLGFGETRKT 296 Query: 292 --------DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 D + K FDAVL D PC+++G +RR+PD+ W+R D VK+A Sbjct: 297 RFQTASLYCADARDLAAWYDGKQFDAVLADVPCTASGVVRRNPDIKWSRRPTDAVKTARQ 356 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q LL + G ++ + CS+ +++ + +QK L Sbjct: 357 QEALLDALWQTLTKNGRMLLATCSVFVEENTQQLQKFLNRHADA---------------- 400 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P G + P+ + DGF+ + + Sbjct: 401 ----KPAGEHVLLPNKYQ---------DGFYYALIEK 424 >gi|229815471|ref|ZP_04445803.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM 13280] gi|229809004|gb|EEP44774.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM 13280] Length = 478 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 98/469 (20%), Positives = 162/469 (34%), Gaps = 43/469 (9%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 RLV+ +L L L RD R + +D L Sbjct: 18 RLVALRILIAARESGRYARELAADACAS---ASLDSRDAAFARRLALGVTGCSGCLDDAL 74 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + VL ++ LR+ ++LYL + V AVE A+ A L N++ Sbjct: 75 NSVLDDP-RSLTADVRDALRIGAYELLYLGTSPQVAVSQAVELARMC--AHGAAGLANAV 131 Query: 128 LRR------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 LRR E+ ++ A + +P W R+ + G+ER A+ + P Sbjct: 132 LRRVAEGTVSFLAAEDVSEQHRVMVSCARRAGLPTWLVRRIVDSLGEERAQAMFACQLEP 191 Query: 176 LYIDLTVKFDI-ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 I + V E L A + + + + L + DA AS Sbjct: 192 APIAVQVNPLRSEAVEDALAADGARSLELPGAYAVDRVSEL--VRSNAFAHADAVASDYH 249 Query: 235 QLFGTLNNLS---VLDLCAAPGGKTAQLIVS------GAKVTALDVSKRRLEKLRCNLDR 285 L++ A G KT ++ + ALD+ + + + ++ Sbjct: 250 AQLIAAAVTREGSCLEIGAGRGTKTFMVLAHAERRNLDHEHVALDLYEGKCQANAQRIEC 309 Query: 286 LHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 L DA D FD V VDAPCS TGT+RRH ++ W Sbjct: 310 SGLGEIFTAAGDATDLDACLAAYDEQLGRTALFDTVFVDAPCSGTGTMRRHGEIPWRLTP 369 Query: 335 DDIVK-SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVELVP 392 + + Q +LL + V GG ++++ CS+ + ++ VV + L S +P Sbjct: 370 QECDRDLPELQLELLREAACRVGAGGQLIYATCSVLRAENSHVVTQFLGSPEGEGFAPMP 429 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ A + + + P + G DG F R+ Sbjct: 430 LSDALAAAGPAYSGAAEDIAAHEIPIGTFQSYPHQGGFDGHFCARFVRV 478 >gi|317407327|gb|EFV87297.1| hypothetical protein HMPREF0005_05441 [Achromobacter xylosoxidans C54] Length = 459 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 160/449 (35%), Gaps = 59/449 (13%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L +++ L L RD+ V V LR L R Sbjct: 3 RVLGEILQWTYPADAALSHWLRGHP--GLGARDRSEVAEAVYDVLRHLRRY----RQFGE 56 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + L +L ++ + ++ A+ + R + ++ R Sbjct: 57 SGVGPASRRL-AILGLAA-------TLGKETLQEGLDPAEAEWLQRVLQIDLATLPR--- 105 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 A IP+W ERL E + +A +DL V + + Sbjct: 106 ----------AVRGSIPDWLDERLGAMDSPET---LIEALNRQASLDLRVNPLKVERDAM 152 Query: 190 AHKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L E +I P F G VQD + + L Sbjct: 153 LAELQQSAGRYEPVAMPYSPWGIRMEGRPAINRWPQFENGSIEVQDEGSQLLALLVAPRR 212 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 ++D CA GGKT L+ S ++ A DVS RL + + R L + Sbjct: 213 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 272 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E DA VLVDAPCS GT+RR+PD+ W + + + + Q ++L Sbjct: 273 ENDARVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPEALAELGQLQERILNSAARC 332 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V PGG +V++ CSL +++E ++ L S P L + ++ + +++ Sbjct: 333 VAPGGRLVYATCSLLAEENEVQAERFLASHPDFERLDAAEILAGRCDNLKL---EGPYVQ 389 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + PD+ G DGFFA R + Sbjct: 390 LRPDV--------HGTDGFFAAVFERRKK 410 >gi|114706569|ref|ZP_01439470.1| SUN-family protein [Fulvimarina pelagi HTCC2506] gi|114537961|gb|EAU41084.1| SUN-family protein [Fulvimarina pelagi HTCC2506] Length = 433 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 46/453 (10%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + +L+ + + + L F +D+ + +V LR + Sbjct: 9 AAIDILTDIEARHRPVAQSLKDWGISHRFAG--SKDRSAIGNLVYDALRRKRSYAYRMGE 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + + + A E + +R L + + Sbjct: 67 DTPRGIVTAAALDG----LGL---------------DASELLAALEGDRFAPNLPDEDVM 107 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + A + +P+W +L+ +G V A +DL V Sbjct: 108 DRFLGRDASGAPDAVAADVPDWLAPKLQALFGDAWVREA-AALSDRPPLDLRVNTLKAER 166 Query: 190 AH-------------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 A +L+ + I ++ GF +G + VQD + + L Sbjct: 167 AKVIEALKPFAAKASELSRTGIRIAPIAGDGRHPNVQVEAGFQKGWFEVQDEGSQLAAAL 226 Query: 237 FGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 G VLDLCA GGKT A + + ++ + D ++RL + L R + + Sbjct: 227 CGAQPGNQVLDLCAGAGGKTLALAAAMENTGQIHSYDGDRQRLAPIYERLKRAGVRNVQV 286 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + A + D VLVDAPC+ TGT RR PD W + K Q +L Q Sbjct: 287 HDPRADLSDLEGAMDIVLVDAPCTGTGTWRRRPDAKWRLSEAALEKRVAEQDAVLDQAAR 346 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 FVKPGG +V+ CS+ ++ + + L + V ++ + + +G Sbjct: 347 FVKPGGRLVYVTCSVLPNENGDRISAFLERTNGFV----VDELGEVWVGLVPGSHKDGIH 402 Query: 414 RIT--PDMLEKIDGVSSGMDGFFAVALRRLIQP 444 R++ + ++G DGFF A+R+ QP Sbjct: 403 RVSVGEGTALTMTPATTGTDGFFVCAIRK--QP 433 >gi|167585709|ref|ZP_02378097.1| Fmu (Sun) domain protein [Burkholderia ubonensis Bu] Length = 424 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 98/446 (21%), Positives = 159/446 (35%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRLT-------LLGLMQ------------------TAGRNALKPFVSDAEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W ++ L + + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRVRANLPDWIQQALSSRFDAEELAQLAAAMNYPAPLDLRANAQKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + P F EG+ VQD + + L Sbjct: 167 DALRANGIDAGATPFAPFGVRVAGKPALTKLKVFEEGMIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRASIDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V + L P LVP D +AL ++ + P Sbjct: 347 GGRLVYATCSVLDAENEAIVAQFLADHP-EFVLVPAQKVL---ADQRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRGQ 420 >gi|167835736|ref|ZP_02462619.1| NOL1/NOP2/sun family protein [Burkholderia thailandensis MSMB43] Length = 420 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 99/446 (22%), Positives = 165/446 (36%), Gaps = 55/446 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + + Sbjct: 14 LLAEVLKFAGPADVTTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEYAHLAESGVGA 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + + + + V A+ + S+ RV Sbjct: 72 PARRLA-------LLGL-----MQTVGRSALRPFVSDAEWAWLDHVAKIDPASLPLRV-- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L G + + + A P +DL + Sbjct: 118 -----------RTNLPDWIHQALAERMGADELAQFAAAVNYPAPLDLRANALKATRDQVV 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DGLRAAGIDAGATPFAPFGVRVVGKPALTKLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS +RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSGKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + + A Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSRETLDELAPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ + ++E +V + L + P LVP + + +AL ++ + P Sbjct: 347 GGRLVYATCSVLEAENEAIVSEFLAAHP-EFALVPASRVLAE---QRIALDTGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 DGFFA L R Q Sbjct: 403 H--------RHATDGFFAAVLERRAQ 420 >gi|284045174|ref|YP_003395514.1| sun protein [Conexibacter woesei DSM 14684] gi|283949395|gb|ADB52139.1| sun protein [Conexibacter woesei DSM 14684] Length = 444 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 96/464 (20%), Positives = 164/464 (35%), Gaps = 61/464 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V++ +L V L G++ L RD A+ ++ +D Sbjct: 10 PARQVAAAVLRRVESDGAYADRALA---GEARRAGLDARDHAFAMALAFGAVQRRRTLDH 66 Query: 66 VLDFVLISSLPRKKYSLQ-QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH----- 119 V++ + + + ++ L + + VA +A VD +VE AK + Sbjct: 67 VIERLARRPVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKAAGGPGYKLVNA 126 Query: 120 -FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + R +++ A + +P+W + G E A+ P Sbjct: 127 VLRRGAREGPRILAQLDDRSPHGAALLHSVPDWIAALWWDALGAEEARALLARVNEPAET 186 Query: 179 DLTVKFDIETWAHKLNA-------------VMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 L V A +P + + + S P FA G Sbjct: 187 ALRVNTLAADPAAVAAELGERGVAVRPAALEGIPLDEGLVVDSAFDVRSDPLFASGALVA 246 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA---------LDVSKRRL 276 Q +A +L VLDLCAAPGGK L A + L Sbjct: 247 QSRAAMAAARLLAPAPGARVLDLCAAPGGKATHLAALVGAAGAAGEVVAVERHEGRAEAL 306 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + L + + + A P FDAVLVD PCS GT++ PD+ W + Sbjct: 307 RETCERLRAGGIVRVETGDA-AQPRDPGDHFDAVLVDPPCSGLGTLQGRPDLRWRASAEA 365 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + + Q ++L G + ++PGG ++++ C++ +++E+VV L + Sbjct: 366 IGELSRLQGRILAAGAAALRPGGALLYATCTISPRENEQVVDAFLAAH------------ 413 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G+ R+ ++ DGFF LRR Sbjct: 414 -------------DGFERV---STRQLTPSRDDTDGFFLALLRR 441 >gi|317124745|ref|YP_004098857.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043] gi|315588833|gb|ADU48130.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043] Length = 501 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 97/479 (20%), Positives = 169/479 (35%), Gaps = 58/479 (12%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + ++ + + L + RD +V R DA Sbjct: 36 PARLTAYTVMREI-NQGAYANLALPKLLREKRLHG---RDAAFATELVYGATRLSGLYDA 91 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + + ++ +R+ Q+L + V +A VD V A++ + A VN Sbjct: 92 ITTRAAGRPVEQIDPAVLDSIRLGAHQVLGMRVPSHAAVDETVALARQVNGS-GAAGFVN 150 Query: 126 SILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKE---------- 163 +++RR+S ++ + A + P W + L Sbjct: 151 AVMRRISERGLDEWLDVVTEGVTDPTEALAIRTSHPLWIVKALRAALIGHGRVAANGVEP 210 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAH--KLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + + +A + + L + + T A AV T + ++ EG Sbjct: 211 ELARLLEADNAAAKVSLAARPGLATVAELAASGAVASSTSPVGAVLPDGDPGAIAAVREG 270 Query: 222 VWWVQDASAS-------IPVQLFGTLNNLSVLDLCAAPGGKT----AQLIVSGAKVTALD 270 VQD + G + LDLCA PGGK + + A + Sbjct: 271 RAAVQDEGSQLLALAIATAEVGAGAITGERWLDLCAGPGGKAGLLASIAVQRRIPFVANE 330 Query: 271 VSKRRLEKLRCNLDRLHL------YAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 V+ R + L ++ D D + VL+DAPC+ G + Sbjct: 331 VNAHRARLVEQTLSAAVAAAVEAGTTVEVRHGDGRDLGGLTPGAYSRVLIDAPCTGLGAL 390 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 RR P+ W R D+ A QR+LL GI + GG++ ++ CS ++ VVQ VLR Sbjct: 391 RRRPEARWRRRPQDVAALATLQRELLASGIEATRAGGVIGYATCSPHLNETRFVVQDVLR 450 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VEL + + + +G ++++ P + G D F LR+ Sbjct: 451 KR-DDVELEDARPLFLDAAGAPLPELGDGPYVQLWPQV--------HGTDAMFLAVLRK 500 >gi|283852902|ref|ZP_06370163.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B] gi|283571731|gb|EFC19730.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B] Length = 451 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 87/418 (20%), Positives = 147/418 (35%), Gaps = 41/418 (9%) Query: 6 NARLVSSHLLSCVMRKR-----------ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54 AR ++ +L V + + LD + L RD+ L +V Sbjct: 11 PARKLALAVLGRVFPAKGAARGPGPGGGQDVQAALDTALAGTK--GLDPRDRGLATELVY 68 Query: 55 VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 LR RID +L L ++++L ++V +ILY V YA VD AV +R Sbjct: 69 GYLRLCGRIDWMLSRFLKKP-EAVPLPVRRVLGLAVYEILYCSRVPAYASVDWAVSAVRR 127 Query: 114 DKENRHFAKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKERLENFY 160 + + N++LRR ++ + ++ PEW + Sbjct: 128 LSG-KGLGGMANAVLRRVAADPKALDDPEFYCPDRCDEATYLSRYYSCPEWIVGLWLRDF 186 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI---VSLPG 217 G A + + L V +A+ G ++ L Sbjct: 187 GPTDTRLYLAAQVEAAPLGLRVNRSRPDARALFDALAALPGVRLADFPTLAVPAGTDLAA 246 Query: 218 F---------AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268 + + I +L V D CA GGK L +G +V A Sbjct: 247 AGVDMGAALAEGRLSRQSAGAQQILSRLGLADWPEPVFDACAGRGGKALFLAEAGKRVFA 306 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 D+ +L LR RL L A +L+DAPCS G + R PD Sbjct: 307 GDMHATKLAGLRKETLRLGLPPVAAFRASATRMPLLSPPGTILLDAPCSGLGVLSRRPDA 366 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 W R+ +D+ Q +L + + PGG +V+ C+++ ++E+ + ++ Sbjct: 367 KWRREPEDLAGLVRLQGAMLEAAYAALPPGGRLVYVTCTVNPAENEQAIDRLGNRHRN 424 >gi|302877269|ref|YP_003845833.1| sun protein [Gallionella capsiferriformans ES-2] gi|302580058|gb|ADL54069.1| sun protein [Gallionella capsiferriformans ES-2] Length = 421 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 131/452 (28%), Positives = 206/452 (45%), Gaps = 46/452 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N +L ++ ++ VM +L +LD + + + ++ + TLRF +++ Sbjct: 2 HNIQLAATQIVQQVMEDGRNLNQVLDESLRRKSVW--TPAQRAALQDLSYGTLRFYGQLN 59 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A+L+ +L + + LL V++ Q+ Y A +AVVD AV A D N LV Sbjct: 60 AILELLLHK--HMTDHRISYLLLVALYQLQYSRAAQHAVVDHAVRSA--DILNPKIRGLV 115 Query: 125 NSILRRVSREKIELLQRIA----GISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N+ILR R + +LL + A G P+W+ + L YG + AI A + L Sbjct: 116 NAILRNFLRNQADLLTQAALKDEGHYSHPQWWIDELRAQYG-DAADAILIAGNGHPPMTL 174 Query: 181 TVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 V A + L E P S+ LPGF +G+ VQDA A Sbjct: 175 RVNAQRGSTPDYLAQLAAQDIPARLIGAEALQLEKPVSVDKLPGFFDGLVSVQDAGAQYA 234 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 +L + VLD CAAPGGKTA + + ++ ALD RL +++ NL RL L A Sbjct: 235 ARLLDAKAGMRVLDACAAPGGKTAHILERADVELLALDKDAARLSRVKENLQRLTLNAAL 294 Query: 293 I--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D+ +LF+ +L D PCS+TG +RRHPD+ W R D+ A Q ++L Sbjct: 295 LTGDAASPSDWWDGRLFERILADVPCSATGVVRRHPDIKWLRRKKDLASFAEQQFEILNA 354 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + PGG+++++ CS+ KQ++++VV K L +P + P Sbjct: 355 LWPLLAPGGLLLYATCSVFKQENQQVVDKFLAQTPAAQQ--------------RDTGLPG 400 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G + PD DGFF L++ + Sbjct: 401 GML--LPD---------DEHDGFFYALLQKTV 421 >gi|148260197|ref|YP_001234324.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5] gi|146401878|gb|ABQ30405.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5] Length = 426 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 98/447 (21%), Positives = 165/447 (36%), Gaps = 45/447 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + LL + R + + F + D+ + IV LR R+ L+ Sbjct: 8 QAAIELLGTIEADRRPADAIANDFLRTRRF--IGGGDRREIGEIVWSVLRARRRLGWWLE 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 V + PR L LRV + + A + + A A ++ Sbjct: 66 RVGAEATPRL---LIASLRV----LTGMPAPRVAGLFGVMRFAP----PPLDAAERRALD 114 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + A +P++ L +G +++ + A + P +DL V T Sbjct: 115 RLDTHTLDHPSMPEAVRLEMPDFVLPLLRERFG-DKLESECAALMQPAPLDLRVNLLKAT 173 Query: 189 WAHKLNAVMLPTG---------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L A+ +++ F +G+ +QD + + L G Sbjct: 174 REEALAALAAAGLKAEPTRLSPWGLRLPGRQNVTVAAPFRDGLVEIQDEGSQLVALLAGA 233 Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V D CA GGKT A + + + A DVS RL+ L R ++ + Sbjct: 234 QPGMRVADYCAGAGGKTLALAMTMANKGHIIACDVSAPRLDGAIRRLRRAGVHNAERHLL 293 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + +K FD VLVDAPC+ GT RR+PD D+ + Q +L Sbjct: 294 ESGDKWVKRQEKKFDRVLVDAPCTGAGTWRRNPDARLKLTETDLAELTAKQAAILDAAQR 353 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +V++ CS+ + ++E ++ L +VP+ + + Sbjct: 354 LVKPGGRLVYATCSVLRPENEAQIESFLARH-SDFAIVPVADGLPAYLHGD-------ML 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 R++P G DGFFA + R Sbjct: 406 RLSP--------ARDGTDGFFACRMER 424 >gi|294341027|emb|CAZ89422.1| putative RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN) [Thiomonas sp. 3As] Length = 435 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 94/459 (20%), Positives = 163/459 (35%), Gaps = 63/459 (13%) Query: 5 MNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 M R + + +L ++R + +L + L + D+ ++ V LR L Sbjct: 1 MKPRDLLYTARDVLRDMLRFDAAADAVLSRLFRAKPQ--LGKTDRQILADTVYQVLRHLR 58 Query: 62 RIDAVLDFVLISSLPRKKYSLQQL-----LRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + LR+++ Sbjct: 59 L------------FQTLAATDESIGGAMELRLAI----------------LGWSGNAQSL 90 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + + R+ + + A +PEW L+ YG E Sbjct: 91 HAALSP-EQLDWRKRLLAQDAMALPEAVRWSLPEWLAAALQANYGAEYPALAQAMLRPAP 149 Query: 177 -YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDA 228 + + V+ + A + ++ L F EG VQD Sbjct: 150 LDLRVNVQKTRREAVLDVFARLNLPAQPTPYSPWGVRLEGKPALQDLTVFREGWVEVQDE 209 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + L V+D CA GGKT ++ S ++ A DV+ RL KL+ L R Sbjct: 210 GSQLLAVLLAPRRGEMVVDFCAGAGGKTLALGAMMRSTGRLYAFDVADYRLAKLKPRLLR 269 Query: 286 LHLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L E D D VLVDAPCS GT+RR+PD+ W + +DI + Sbjct: 270 SGLSNVYPVAIAHERDERVRRLAGKVDRVLVDAPCSGLGTLRRNPDMKWRQKPEDIAELR 329 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + +KPGG +V++ CS+ +++ + L + P E VP ++ + Sbjct: 330 TKQASILQSAATLLKPGGRLVYATCSILPEENSGIFNAFLAAHP-DFERVPADTVLRQQG 388 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L +G +++ P+ DGF+A L+R Sbjct: 389 VDGEGLVTQGDLQLLPN--------RHATDGFYAAVLQR 419 >gi|269214400|ref|ZP_05986484.2| putative ribosomal RNA small subunit methyltransferase B [Neisseria lactamica ATCC 23970] gi|269209995|gb|EEZ76450.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria lactamica ATCC 23970] Length = 419 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 11 AKVLAEMLTFKQPADAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 64 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 65 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 105 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 106 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 165 Query: 189 WAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + F +G VQD + + L G Sbjct: 166 VLPLLQAESADAEATPYSPWGIRLKNKIAFNKHELFLDGTLEVQDEGSQLLALLVGAKRG 225 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 226 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSE 285 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + ++ + Q +L V Sbjct: 286 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSSETVANLLEQQHSILDAASKLV 345 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 346 KTQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LAGLKIDLDTGKYLRL 401 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 402 --------DSAKHQTDGFFAAVLQRK 419 >gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5] gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5] Length = 450 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 93/454 (20%), Positives = 180/454 (39%), Gaps = 37/454 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + L+ V K +S L+ + + + + A V ++ +ID +L+ Sbjct: 11 EIIADALTLVEEKELSSKHALERIFKRVEGKDKETA-RGIAHAYVFEIEKWRAKIDFILN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120 VL S + L LLR+ ++ + V VV + K N Sbjct: 70 SVLRGSKVEDLDLYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTKAKFANAIL 129 Query: 121 AK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + N ++ + ++ ++ P W+ E + + G + + + + + P Sbjct: 130 REVEKFNVEKALRKLKEKDRIEWLSVRFSHPRWYVEYIIDMLGYDEAVRLLLSNLRPQRY 189 Query: 179 DLTVKF---DIETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + V DI+ L A+ +++ + + + L +G + +QD + Sbjct: 190 YVRVNTLKADIDKVRRYLEENGVRVALTPVDDVLKVLDYEKPVTRLEWHRKGYFVIQDLA 249 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + VLDL AAPG KT + + ++ A+D S RL K++ + RL Sbjct: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLMKMKERMKRL 309 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ D + ++ F+ +++DAPCSS+GT R+ P+V W D + I + QR Sbjct: 310 GVKNVKLVHADGQSFIDREGFEKIILDAPCSSSGTYRQFPEVKWRFDEEKIKRVISVQRN 369 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +LL ++ GG + +S CS+ ++EE V L E+V + D Sbjct: 370 MLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK---GFEIVDYPFEWG---DKGFL 423 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E R + FF LR+ Sbjct: 424 EIGEKVFRAWTHKHDCNS--------FFIAKLRK 449 >gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-28] gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-28] Length = 354 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 33/365 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEW 151 + A + AVE AKR + ++ + +VN +LR + RE + ++R+A + P W Sbjct: 2 PERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLDEIKDPVERLAIATSHPVW 60 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGI 203 + + YG E + + + P V D T + A Sbjct: 61 LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLASEGIEAKSGDLSND 120 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS- 262 ++ ++ F +G +QD S+ + + +VLD CAAPGGKT + Sbjct: 121 AIQIERGNVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERL 180 Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCS 317 KV +LD+ ++ ++ +RL L + +D ++ + FD +LVDAPCS Sbjct: 181 KGTGKVMSLDLHAHKVRLIKQQAERLGLENIETKALDARKVQEHFANETFDKILVDAPCS 240 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K ++E+V+ Sbjct: 241 GFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVI 300 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 K L+ P E + + + EG ++I P DGF+ Sbjct: 301 DKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQILPHYFA--------TDGFYIAC 349 Query: 438 LRRLI 442 LR+ + Sbjct: 350 LRKKV 354 >gi|261377514|ref|ZP_05982087.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria cinerea ATCC 14685] gi|269146250|gb|EEZ72668.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria cinerea ATCC 14685] Length = 418 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 86/446 (19%), Positives = 164/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTAFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A T + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADTEAAPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPKRISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 DA D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDARIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLAQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-EFELVNCAELL---QSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFAAILQRK 418 >gi|323342155|ref|ZP_08082388.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464580|gb|EFY09773.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 404 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 100/442 (22%), Positives = 184/442 (41%), Gaps = 51/442 (11%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R+ S +LS V K +L L +DQ V A V TL+ +D Sbjct: 3 RIESYKVLSEVYFKGRHAHLVLKEL-------DLPAQDQAFVSAFVYATLQNSLFLDYQY 55 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + ++ LP+ ++ ++++ AQ +D + DYA+V V+ K ++R+ + +VN+ Sbjct: 56 EDLVDKKLPK---EVRLVIKMGCAQYFKMDKIPDYALVSETVDLCKAIGKHRY-SGVVNA 111 Query: 127 ILRRVSREKIELL-----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +L++V + + + +P W + L Y + LA + C + Sbjct: 112 VLKKVIERNEREISGSDLEVASIQYSMPLWIMKLLSKQYSESFSLAYAQYCQDIKPTYVR 171 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 T + ++ ++ EG VQD ++ V+ Sbjct: 172 FNALKPTTDDLSDFILDDQDKHL---AKPALFKSKYLQEGYVLVQDINSQEVVRWMDLEP 228 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 +LSVLD C PG KT Q+ +T +++ + R E R L+R ++ +II D Sbjct: 229 SLSVLDCCCGPGTKTVQIANYLENSGTITGVELHESRAEATRALLERCNVVNANIITSDV 288 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + + +D +LVDAPCS G + D+ + D+ + Q+++L+ FVK Sbjct: 289 LQFQTDQKYDRILVDAPCSGLGVLSHKHDLRYHIFPQDLDELVKIQQEMLIHTSQFVKKD 348 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 GI+V+S C+L+++++E+ VQ L EL+ Sbjct: 349 GILVYSTCTLNRKENEKQVQTFLDHHSN-FELI--------------------------- 380 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 ++ V + DGF+ L+R Sbjct: 381 KEVTLNPVETKGDGFYIAKLKR 402 >gi|254172425|ref|ZP_04879100.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator domain [Thermococcus sp. AM4] gi|214033354|gb|EEB74181.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-terminal NusB regulator domain [Thermococcus sp. AM4] Length = 451 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 92/456 (20%), Positives = 184/456 (40%), Gaps = 38/456 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + LS V + +S L+ + A + + + L A V ++ +ID +++ Sbjct: 11 EVVADALSLVEERELSSKHALERVFRKVAGKDREKA-RGLAHAYVFEIEKWRGKIDFIIN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL S + L LLR+ +I + V D V K + + AK VN++ Sbjct: 70 SVLRGSKVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSVVRVVKE-RFDFSRAKFVNAL 128 Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + + + ++ ++ P W+ E + G + + + + P Sbjct: 129 MHSIEKFDVERALKRLKERDRIEWLSVRFSHPRWYVEYVIELLGYDEAVRLLLSNNRPQR 188 Query: 178 IDLTVKF------DIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + + A+ +++ + + L + EG + +QD Sbjct: 189 YYVRANTLKTDVDSLRDYLEENGVRTALTPVPDVLKVLDYRTPVTRLDWYKEGKFVIQDL 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +++ + VLDL AAPG KT + + ++ A+D S RL +++ + Sbjct: 249 ASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRLMRMKEKMKL 308 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + ++ D + K FD +++DAPCSS+GT R+ P+V W D + I + QR Sbjct: 309 LGIKNVKLVHADGQSFRDKAKFDRIILDAPCSSSGTYRQFPEVKWRFDENKIKRIISVQR 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L ++ GG + +S CS+ + EE V + + +E++P + ++ D Sbjct: 369 NMLRNAYENLREGGEMTYSTCSIRVDEDEENVLFAVER--VGLEVIPYDFSWG---DRGF 423 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + R + FF + RL Sbjct: 424 LEIGDKVFRAWTH--------RHDCNSFFIAKMGRL 451 >gi|78355064|ref|YP_386513.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217469|gb|ABB36818.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 444 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 97/462 (20%), Positives = 154/462 (33%), Gaps = 61/462 (13%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V+ K+ +LD D+ LS +D L +V LR RI Sbjct: 16 PARGAALEILRDVLDKKREAQSVLDSYLKDNR---LSPQDAALCTELVYGYLRSEIRISW 72 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L R L + +SV +ILYL V YA VD AV + ++L Sbjct: 73 LIRRFL-KPDSRLPAELLLTMGISVYEILYLQRVPVYASVDWAVSYVRSRFGT-GLSRLA 130 Query: 125 NSILRRVSREKIELLQRIAGI-----------------SIIPEWFKERLENFYGKERVLA 167 N++LR + R LQ P W + YG+ER Sbjct: 131 NAVLRSIDRLGDAPLQSGWYRETLQAEGVDTAGYLSVWYAAPRWVVDMWIEAYGEERAEQ 190 Query: 168 ISDACISPL------YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-GFAE 220 + + + + L L E Sbjct: 191 YLAGSSRHAPAGVRINLRHPEGPQTHARLTAHPSCIGHSAAGLLFASDSRPAELYVLQEE 250 Query: 221 GVWWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEK 278 G+ Q + + D C GGKT L+ G A D S++RL+ Sbjct: 251 GIASSQSFAVQEVMDALRPETWEGPVWDCCCGRGGKTCSLLERGVDVCAASDPSEKRLKG 310 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 LR L+RL L + A AVL D PCS GT+ R PD+ R + Sbjct: 311 LRTELERLGLPDVPLFAAPASQVPEGIAPRAVLADVPCSGLGTLSRRPDIRQHRTPYSMA 370 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q ++L + GG++ + C+L+ +++E + + + S + L Sbjct: 371 RLVTLQSEILDNVWQVLPAGGLLAYITCTLNPEENELQIARFMERSQAQLMLEWTTPPDS 430 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + F+A LR+ Sbjct: 431 PACEY-----------------------------FYAALLRK 443 >gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 451 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 89/453 (19%), Positives = 184/453 (40%), Gaps = 38/453 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + LS V + +S L+ + A + + + L A V ++ +ID +++ Sbjct: 11 EVVADALSLVEERELSSKHALERVFRKVAGKDREKA-RGLAHAYVFEIEKWRAKIDFIIN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL S + L LLR+ +I + V D + K + + AK VN++ Sbjct: 70 SVLKGSKVEDLDPYLANLLRIGTFEIHFRKVPPAIATDSIIRVVKE-RFDFSRAKFVNAL 128 Query: 128 LRRVSREK----------IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + + + ++ ++ P W+ E + G + + + + P Sbjct: 129 MHSIEKFDVERALKRLKERDRIEWLSVRFSHPRWYVEYVIELLGYDEAVRLLLSNNRPQR 188 Query: 178 IDLTV------KFDIETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + + + + A+ +++ + + L + EG + +QD Sbjct: 189 YYVRANTLKTDMDSLRDYLEENGVRTALTPVPDVLKVLDYKTPVTRLDWYKEGKFVIQDL 248 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 +++ + VLDL AAPG KT + + ++ A+D S RL +++ + Sbjct: 249 ASAYVAHVLNPEPGERVLDLAAAPGSKTFHAASLMENKGEIVAVDYSYDRLMRMKEKMKI 308 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L + ++ D + K FD +++DAPCSS+GT R+ P+V W D I + QR Sbjct: 309 LGIKNVKLVHADGQSFRDKAKFDRIILDAPCSSSGTYRQFPEVKWRFDERKIKRIISVQR 368 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L ++ GG++ +S CS+ + EE V + + +EL+P + ++ + + Sbjct: 369 NMLRNAYENLRDGGVMTYSTCSIRIDEDEENVLFAVEK--VGLELLPYDFSWGDRGFLEI 426 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 D + + + FF + Sbjct: 427 G-----------DRVFRAWTHRHDCNSFFIAKM 448 >gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-29] gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-3] gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock1-3] gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus Rock3-29] Length = 354 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 33/365 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE-------KIELLQRIAGISIIPEW 151 + A + AVE AKR + ++ + +VN +LR + RE + ++R+A + P W Sbjct: 2 PERAAIHEAVEIAKR-RGHKGISGMVNGVLRSIQREGVPSLDEIKDPVERLAIATSHPVW 60 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN--------AVMLPTGGI 203 + + YG E + + + P V D T + A Sbjct: 61 LVQDWASEYGLETAEKMCEVNMLPPVPTARVNVDKVTVEEAIELLASEGIEAKSGDLSDD 120 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS- 262 ++ ++ F +G +QD S+ + + +VLD CAAPGGKT + Sbjct: 121 AIQIERGNVAHTEAFKKGFLSIQDESSMLVARALDPNEGETVLDSCAAPGGKTTHIAERL 180 Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCS 317 KV +LD+ ++ ++ +RL L + +D ++ + FD +LVDAPCS Sbjct: 181 KGTGKVMSLDLHAHKVRLIKQQAERLGLENIETKALDARKVQEHFANETFDKILVDAPCS 240 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G IRR PD+ +D D + + Q +L + +K GG +V+S C+++K ++E+V+ Sbjct: 241 GFGVIRRKPDIKLGKDKGDSERLSTIQLAILEKIAPLLKQGGRLVYSTCTIEKIENEQVI 300 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 K L+ P E + + + EG ++I P DGF+ Sbjct: 301 DKFLKEHP---EFEWDTTIKERMPEKLSPYINEGQVQILPHYFA--------TDGFYIAC 349 Query: 438 LRRLI 442 LR+ + Sbjct: 350 LRKKV 354 >gi|288931958|ref|YP_003436018.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] gi|288894206|gb|ADC65743.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] Length = 446 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 187/463 (40%), Gaps = 44/463 (9%) Query: 5 MNARLVSSHLLSCVMRKR---ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 R +L+ V+RK + + + D+IL A+ ++ L Sbjct: 2 YKVRERDFVILTEVLRKSEEIKPSQYAKRIVFEKYGILG-TDLDRIL-TAVYYKIMKRLG 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSV----AQILYLDVADYAVVDLAVEQAKRDKEN 117 ID ++ V+ L+ LRV+V + Y+ D V +V + Sbjct: 60 IIDKIIRNVVGVHQNILDPWLRAALRVTVEFFVFEKKYVKHLDKNAVRKSVASFLSKTTH 119 Query: 118 RHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFYGKERVLAISDACIS 174 + I +V+ +++ I ++P W+ ER E + + A + Sbjct: 120 PYVGMFYYEIFDKVTSYELQPRNEIEKLEFKYLLPAWYIER-MKEVVGEELEDLLKALNT 178 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRL---------KELPESIVSLPGFAEGVWWV 225 I + V + A+ + + + P + +G + + Sbjct: 179 EPKISVRVNTLKARVEEVVKALEKEGKEVTISEVVPTVLKFDGPYDFDRSKLYRKGKFVI 238 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ ++++ L V+DLCAAPGGKT + + + + A D+ + RL+++ Sbjct: 239 QEEASALASILLDPKPGEVVVDLCAAPGGKTLHMAELMKNRGVIHAFDIDELRLKRMEEL 298 Query: 283 LDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 ++R + I + DA + + D V++DAPC+S GT+ ++P++ W + I + Sbjct: 299 IERCGIRIVKIYKKDARKATKILGESVADKVMLDAPCTSDGTLMKNPELRWRIREEKIEE 358 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A Q +LL + +KPGG V++ CS+ K+++E VV+++L+ V LVPL+ Y Sbjct: 359 LAELQYELLNVAVDLLKPGGRVLYCTCSMFKEENEGVVERILKERK-DVRLVPLSGYYSP 417 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 EG IR P GFF L + Sbjct: 418 GFI-------EGTIRAFPH--------RHNTIGFFYALLEKTT 445 >gi|161523966|ref|YP_001578978.1| Fmu (Sun) domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189351273|ref|YP_001946901.1| Sun protein [Burkholderia multivorans ATCC 17616] gi|160341395|gb|ABX14481.1| Fmu (Sun) domain protein [Burkholderia multivorans ATCC 17616] gi|189335295|dbj|BAG44365.1| Sun protein [Burkholderia multivorans ATCC 17616] Length = 421 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 157/445 (35%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRLT-------LLGLMQ------------------TMGRNALKPFVSPAEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + + + +P+W ++ L + E + ++ A P +DL E Sbjct: 107 KIDPASLPVRIRTNLPDWIQQALSTRFDAEELAQLAAALNYPAPLDLRANVLKATREQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DALRANGIDAGETPFAPHGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSVDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E VV++ L P LVP D +AL ++ + P Sbjct: 347 GGRLVYATCSVLNAENERVVEQFLADHP-DFVLVPAQKVL---ADQRIALETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|209885589|ref|YP_002289446.1| Fmu [Oligotropha carboxidovorans OM5] gi|209873785|gb|ACI93581.1| Fmu [Oligotropha carboxidovorans OM5] Length = 433 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 159/459 (34%), Gaps = 47/459 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L + +RI L F D+ + +V LR Sbjct: 1 MTP--AARLSAAIDVLGAIEAERIPAQNALKSWGTAHRFAG--SGDRAAIAGLVFDALRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D S + L ++ LDV A R Sbjct: 57 HASSAYLMD----------DDSARARLLGALKLERGLDVEA---------IASLCNGERF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ R + P W +G +RV A S +D Sbjct: 98 APVPLSDAERNALATRTLADAPSDIAGDYPTWLDPHFAEAFGDDRVKEA-AAMASRAPLD 156 Query: 180 LTVKFDIETWAHK------LNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQD 227 L V L A P + L+ + + PG F +G VQD Sbjct: 157 LRVNTLRAKREKAQAALSHLGATPTPWSPLGLRIVLGADARNPGVHAEEIFLKGGVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALFTQAKPGEQVVDLCAGAGGKTLALAAMMQGKGRLLATDRDKRQLAPIHQRLS 276 Query: 285 RLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ +I + D V+VDAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNAEIRSPRGAEDVLADASGKADLVVVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + S VKPGG + + CS+ Q++ ++ L P + P Sbjct: 337 KDQVEVLTRAASLVKPGGRLAYITCSVLPQENSGQIEAFLAREPGFTVMPPAEVIAALGE 396 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A +R++P L + + +G DGFF LR+ Sbjct: 397 RAAAFREA---VRLSPQGLL-MTPLRTGTDGFFVSLLRK 431 >gi|86741875|ref|YP_482275.1| putative RNA-binding Sun protein [Frankia sp. CcI3] gi|86568737|gb|ABD12546.1| putative RNA-binding Sun protein [Frankia sp. CcI3] Length = 491 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 97/485 (20%), Positives = 158/485 (32%), Gaps = 66/485 (13%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL++ +L V + LL S LS RD+ V + +LR +D V Sbjct: 21 PRLLAWEVLRAVDERGSYANLLLPSLLAGS---GLSARDRGFVTELAYGSLRAQGTLDGV 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF------ 120 LD + ++ LR+ Q+L V +A V VE + R Sbjct: 78 LDTATSRPVHTIDPPVRDALRLGAYQLLRTRVPAHAAVASTVELVRTTSGERPVRFANAV 137 Query: 121 ----------AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE--RVLAI 168 + + R ++ + +A ++ P W E + + A Sbjct: 138 LRRVAARVAETGGDLATMLSAPRFDVDPVGHLAVVTTHPRWIVEVVAEALAGDLTATRAA 197 Query: 169 SDACISPLYIDLTVKFDI--------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 +A + L + E L A + P ++ LP A Sbjct: 198 LEADDVRPAVHLVARPGRVDRDRLLAEAAQAGLTARVGPYSPYAVRLDGGDPAGLPAVAA 257 Query: 221 GVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTAQLIVSGAKVTALD----- 270 G VQD + + + +DLCA PGGK A L D Sbjct: 258 GAAAVQDEGSQLVTLALARAATVGRDLGLTVDLCAGPGGKAALLAALLGGSAPSDGPGLP 317 Query: 271 -------------VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPC 316 V R + D + D VLVD PC Sbjct: 318 DRPGPPDRPALIAVEPRATRAAMVARSLGDAARAWTVRADGRAVPLRPDGADRVLVDVPC 377 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 + G +RR P+ W R + D+ QR LL+ + V+PGG+V ++ CS ++ EV Sbjct: 378 TGLGALRRRPEARWRRTSADVAALVPLQRALLVAALDLVRPGGVVAYATCSPHPAETVEV 437 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V+ V ++ + + ++++ P + G D F Sbjct: 438 VRGVAGQR-ADTSILDARLTLPEVDRLGDGP----FVQLWPHL--------HGTDAMFVA 484 Query: 437 ALRRL 441 LRR+ Sbjct: 485 LLRRV 489 >gi|295675129|ref|YP_003603653.1| sun protein [Burkholderia sp. CCGE1002] gi|295434972|gb|ADG14142.1| sun protein [Burkholderia sp. CCGE1002] Length = 479 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 104/449 (23%), Positives = 178/449 (39%), Gaps = 27/449 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V +L L + + + V+ + T+R L + ++ + Sbjct: 38 AAQAVGAVRL-GAALPAALQSVFAAMPEGNAAAA-RGAVQDLAYRTMRRLASAEWLIAKL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L ++A ++ + + + VVD AV +E LVN+ Sbjct: 96 VKKAPP---PHVAHVLACALALLVDDETSAAYTPFTVVDQAVSAIGARREFAFAKGLVNA 152 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LR RE+ + P W+ + ++ + + ++ + + Sbjct: 153 VLRNFLRERDTLLAAVQADEVAHWNYPAWWIDAVKRTWPEAWQSVLAAGNTQGPLTLRVN 212 Query: 182 VKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + ++ + P + +PGF EGV VQDA A + QL Sbjct: 213 ARHSTVDAYLQELQRQQITARKAGEHAVTLATPMPVERIPGFNEGVVSVQDAGAQLAAQL 272 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291 G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANIQLVALESDASRARRIGENLRRLKLEAEVRIG 332 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 333 DAGNPAQWHDDLDQPFDRILADVPCSASGIVRRHPDIRWLRRQSDIAALVSEQRRILDAL 392 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VKPGG +++ CS+ ++ E Q V L S+ A A S G Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNQHQDAVRL-DAPGQLLPSVARAPADSSAG 451 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P DGFF ++ Sbjct: 452 SHAGRPAEFSTGTNSDH--DGFFYARFQK 478 >gi|254473408|ref|ZP_05086805.1| putative sun protein [Pseudovibrio sp. JE062] gi|211957524|gb|EEA92727.1| putative sun protein [Pseudovibrio sp. JE062] Length = 430 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 92/452 (20%), Positives = 162/452 (35%), Gaps = 50/452 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ + +R + L F D++ + +V LR + Sbjct: 8 AAAIEVLTEINDRRRPVQEALKDWGNKHRFAG--SGDRVAIGNLVFDALRHKLSHAQAMG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L ++ + + + + +E+RH + ++ Sbjct: 66 SESAR-----------ALVLATY--------IWGWGNQVEKLEQVMEEDRHAPEPLSDAE 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 R E ++ + IPEW + +G + LA+ + ID+ V Sbjct: 107 RTALIENKQVGDNDQISANIPEWLWPHFQENFGDD-ALAVGRSLSERAPIDMRVNTVKSS 165 Query: 186 IETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +L+ V + + + + F +G + +QD ++ I Sbjct: 166 QDKVLKRLSHLHPEASGLSPVGVRLEPVVGPRKSPHVQAEESFRKGWFELQDEASQIASI 225 Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G VLDLCA GGK A + + ++ A D K RL L + R + Sbjct: 226 LSGAQPGEQVLDLCAGGGGKSLALAAQMQNKGQIYAYDAHKTRLAPLYDRMARAGVRNIQ 285 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 I+ D V VDAPCS TG RR PD W + + Q ++L Sbjct: 286 TIDPQTGSLDICDGKMDRVFVDAPCSGTGVWRRRPDTKWRVTENALNGRIEDQAQVLETA 345 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSP 409 FV+ GG ++++ CSL +++ VQ L V+L P+ ++ + L Sbjct: 346 TRFVRSGGKLIYATCSLVPAENQLQVQAFLEKHTDFKLVDLAPVWEEHFGEVSSRRPLFK 405 Query: 410 E-GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G I +TP G DGFF + R Sbjct: 406 DGGMITLTPHHT--------GTDGFFIAMMER 429 >gi|330994635|ref|ZP_08318558.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter sp. SXCC-1] gi|329758276|gb|EGG74797.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter sp. SXCC-1] Length = 431 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 92/460 (20%), Positives = 166/460 (36%), Gaps = 51/460 (11%) Query: 1 MKSGMNARL-VSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M ARL + LL+ + + L + + + + + D+ + A V LR Sbjct: 1 MTPS--ARLSAAIDLLAAMEATPQRPADALANAFFRERRY--IGGGDRRAISARVWRVLR 56 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 R+ + PR +L + + + Sbjct: 57 HWRRLHWWIARAGGQVTPRT-----LVLAMMALEPDGHETPHTLFTGERY-------APL 104 Query: 119 HFAKLVNSILRRVSREKIEL-LQRIAGISIIPEWFKERLE-----------NFYGKERVL 166 +++ R+ + + A +P+W RLE E L Sbjct: 105 GLIGHESALYDRLRGQGMVHADMPRAVRLEVPDWLLPRLERTFGDGLEAELAAMDGEATL 164 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + + D + + A+ + + S F G+ +Q Sbjct: 165 DLRVNLLKSDRATACAALDRDGIRAEETALSPWG---LRVAGRQPVTSSTAFRNGLIEIQ 221 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + + V G + VLD CA GK A + + + A DVS+ RLE L Sbjct: 222 DEGSQLVVAAVGARPGMRVLDYCAGAAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRL 281 Query: 284 DRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R ++ + D + FD VLVDAPC+ TGT RR+PD D+++ Sbjct: 282 RRAGVHNAERHLLVAGDRWARRRSGSFDRVLVDAPCTGTGTWRRNPDARLRLREQDLLEL 341 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +++ + + V+PGG +V++ CS+ ++++ + + L +P + P Sbjct: 342 TAKQAEIIDRAAALVRPGGRMVYATCSVLREENGDQIAAFLARNPAFSLVAP----DGAH 397 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ LS +G + +TP DGFFA ++R Sbjct: 398 DDLPPGLSTDGQVSLTP--------RQHHTDGFFAAIMQR 429 >gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147] gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147] Length = 418 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 112/445 (25%), Positives = 191/445 (42%), Gaps = 50/445 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ L+ V +L+ L + L+ +D+ +++ I R L + +L Sbjct: 9 LAAQTLAAV-ASGKNLSDELAHIIAQNP--ELTAQDKGMLQDIAYGCQRHLGSLKFMLGK 65 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 +L + +LQ L V++ Q+ + A +AVV+ AV + ++ + N+ILR Sbjct: 66 MLNKPID--NEALQSYLLVALYQLNHTQNAPHAVVNEAVNHIAQIGHGQYRS-FANAILR 122 Query: 130 RVSRE----KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV--- 182 R RE +P W ++ L+N Y K I+ A + + L V Sbjct: 123 RFLREKDGLNKACRYDDVAKHNLPIWLQKTLQNQYPKHW-HNIATAFQAHPPLTLRVNRR 181 Query: 183 KFDIETWAHKLNAVMLP----TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 D E + L+ L + LP FAEG VQD A L Sbjct: 182 HADAEQYLAALHDAGLNGKILDDYAIRLAQAVPVAQLPRFAEGWVSVQDWGAQQAAYLLN 241 Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + VLD CAAPGGKT ++ + +TALD++ +RL+++R NL RLH A Sbjct: 242 PQHGERVLDACAAPGGKTGHILELADCDLTALDIAPQRLQRVRDNLARLHFQAALHCADA 301 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + D+ + FDA+L D PC+++GTI+R+PD+ W R D K+A Q LL + + Sbjct: 302 QNLSDWYNGEPFDAILADIPCTASGTIKRNPDIKWLRRPGDAYKTARQQEPLLDALWTTL 361 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG ++ + CS+ ++++++ + L R+ Sbjct: 362 KSGGRMLLATCSVFEEENQQQCHRFLNRHADA--------------------------RL 395 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 E+ S DGF+ + + Sbjct: 396 ---HTEQTLIPSEKQDGFYYALIEK 417 >gi|126465287|ref|YP_001040396.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1] gi|126014110|gb|ABN69488.1| Fmu (Sun) domain protein [Staphylothermus marinus F1] Length = 449 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 91/457 (19%), Positives = 176/457 (38%), Gaps = 44/457 (9%) Query: 9 LVSSHLLSCVMRKRI--SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 + L+ V + S+RD LV AI ++ L +D Sbjct: 9 EMVLALVEAVRLSERIKPSQDAKRRAFRKYGILG-SKRD-PLVTAIFYGVMKRLGILDLY 66 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR---DKENRHFAKL 123 + ++ + L+ LRV + +I + + K + + Sbjct: 67 IRDIIGVNPYIIDPWLRAALRV-LLEIKVYRDPSRRTLRYLRGSVAKLLSSKTHPYVGMY 125 Query: 124 VNSILRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVLAISDACISPLYI 178 I ++ E E + ++P W+ ++ G + A L + Sbjct: 126 YTRIYDKIINENYEYKPKNEDEELLVKYMLPPWYVRKIIGLLGNNEAEKLFKALDKQLPL 185 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG---------FAEGVWWVQDAS 229 + V + L + ++ + +I+ PG +G +Q+ + Sbjct: 186 SVRVNTLKTSVEEVLEELRREVKWVKRSSIVPTILKFPGPYNFDKSHLLRKGYIVIQEEA 245 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 A++ + ++V+D+ AAPGGKT + + + + A D+ ++R+ ++R L R Sbjct: 246 AAVASLILDPKPGMTVVDMAAAPGGKTQHMAELMNNEGVIYAFDIDEKRIARMRDILRRT 305 Query: 287 HLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + I D+ +++ D VL+DAPCSS GTI ++PD+ W + I + Sbjct: 306 GVRNARIYREDSRKAPDILGEEIADRVLLDAPCSSDGTIMKNPDLRWRLREEKISELQKL 365 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L G +KPGG +++ CS+ +++E +++K L+ EL+PLN Y Sbjct: 366 QYEMLEAGWKLLKPGGKLLYCTCSMLLEENEYIIEKFLKQH-YNAELIPLNKPYDPGFLP 424 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +R P GFF L + Sbjct: 425 -------GTMRAWPH--------RHETIGFFYALLMK 446 >gi|256157947|ref|ZP_05455865.1| Fmu (Sun) domain-containing protein [Brucella ceti M490/95/1] gi|256253094|ref|ZP_05458630.1| Fmu (Sun) domain-containing protein [Brucella ceti B1/94] gi|261220197|ref|ZP_05934478.1| fmu domain-containing protein [Brucella ceti B1/94] gi|265996456|ref|ZP_06109013.1| fmu domain-containing protein [Brucella ceti M490/95/1] gi|260918781|gb|EEX85434.1| fmu domain-containing protein [Brucella ceti B1/94] gi|262550753|gb|EEZ06914.1| fmu domain-containing protein [Brucella ceti M490/95/1] Length = 429 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L + E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENLDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +S+G DGF+ L+R Sbjct: 402 --VFPSHGSVFSPLSTGTDGFYVSILQR 427 >gi|304391245|ref|ZP_07373189.1| Fmu [Ahrensia sp. R2A130] gi|303296601|gb|EFL90957.1| Fmu [Ahrensia sp. R2A130] Length = 429 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 89/453 (19%), Positives = 158/453 (34%), Gaps = 43/453 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ G A + +L+ + ++ ++ L D F D+ + IV LR Sbjct: 1 MRLGGRA-NAAIEVLNDIDKRSRPVSEALKGWGLDHRFAG--SGDRAAIGNIVYDALRSK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + +D L + +L + + A ++ Sbjct: 58 RSLQWRMDSDSTRKL------VLAVLL-----------DSWGFSPETLNAA--FDGDKFA 98 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YI 178 L+ + A + +P+W E + E + P Sbjct: 99 PDLLTDDEIAKWTSRKLADAPPAVQADLPDWLVPSFEANFADEWMEEAKAFSQRPPVDMR 158 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP----------GFAEGVWWVQDA 228 T+K + A L + L + P F G + +QDA Sbjct: 159 ANTLKASRDKVAKALAKAGAVPDPLTRFGLRVAAGEGPSRQPNVQSEGAFQRGQFEIQDA 218 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + I L VLDLCA GGKT A ++ + ++ A D +K+RL+ + L R Sbjct: 219 GSQIVSDLVFARPGEQVLDLCAGAGGKTLALAAVMENKGQIHAYDSNKQRLKPIYDRLKR 278 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ + D D V++DAPC+ TGT RRHP W + + Q Sbjct: 279 AGVHNAQVHGPDDDISDLVGKMDRVVIDAPCTGTGTWRRHPHAKWKLSREMLENRLTEQE 338 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L Q + FVKPGG +++ CS+ +++E + +P EL+ + Sbjct: 339 EVLSQAVPFVKPGGFLIYITCSVLPEENENQIVAFTTDNP-QFELLSSGEVWQDLFGFDK 397 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + S+G DGF+ + Sbjct: 398 PQPWSSDM-----KSITLTPASTGTDGFYFAVM 425 >gi|258404156|ref|YP_003196898.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692] gi|257796383|gb|ACV67320.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692] Length = 429 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 85/408 (20%), Positives = 149/408 (36%), Gaps = 38/408 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V+ + L LD L RD+ L +V R ++ Sbjct: 9 PARQAALSCLEGVLLRDQELQASLDGVLDS---ASLEPRDRALATELVYGVCRHKTHLET 65 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 + + R K L+ +L V+ ++LYLD + YA VD AV K+ + A + Sbjct: 66 AITRFVH-PKTRLKPRLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRVAVQR-AGVA 123 Query: 125 NSILRRVSREKIE----------------LLQRIAGISIIPEWFKERLENFYGKERVLAI 168 N++LRR++ + Q A PEW YG + ++ Sbjct: 124 NAVLRRLADDLHNRGRPAVVHELQAVRGSNDQAWAKAYSCPEWIVRLWRRAYGDQTAASL 183 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 A + + L + ++ ++ ++ A Q + Sbjct: 184 LQASLQVPPVGLRFAPGPQG-DQAWQRWRHRPECLQAVARGVAVHNVDAAAVEELEAQGS 242 Query: 229 SASIP-------VQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRC 281 +A L + + D C GGKT G V + D ++R++ L Sbjct: 243 AARQSLAAQEALWALEPSAWEGPLWDGCCGRGGKTLFCRELGFTVYSSDPHRQRVQLLAQ 302 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV-DAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R I DA + ++ D PCS G + R PD W R +D+ Sbjct: 303 QSSR-------ICLADAAYPPFRSGELRTVLLDVPCSGLGVLSRRPDSKWKRAPEDLQGL 355 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 QR++L + + PGG +V+ C+ + +++E+ +Q + P V Sbjct: 356 VRLQRRMLEAAFALLPPGGRLVYMTCTCNPEENEDQIQWLCHREPGGV 403 >gi|254805144|ref|YP_003083365.1| putative SUN-family protein [Neisseria meningitidis alpha14] gi|254668686|emb|CBA06415.1| putative SUN-family protein [Neisseria meningitidis alpha14] Length = 418 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 88/446 (19%), Positives = 167/446 (37%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ + + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAETLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + + L + Sbjct: 64 RCPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETAFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ +G+E +LA + P +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWGEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + K Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P E P+N A + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP---EFEPVNCAEL-LQSLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFAAVLQRK 418 >gi|254502118|ref|ZP_05114269.1| NOL1/NOP2/sun family protein [Labrenzia alexandrii DFL-11] gi|222438189|gb|EEE44868.1| NOL1/NOP2/sun family protein [Labrenzia alexandrii DFL-11] Length = 430 Score = 187 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 90/462 (19%), Positives = 163/462 (35%), Gaps = 52/462 (11%) Query: 1 MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK G RL ++ +L V R+ + +L F D+ ++ +V LR Sbjct: 1 MKDGG--RLAAAIEVLDEVERRHRPVQVVLKEWGSSHRFAG--SGDRTVIGNLVFDALRN 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + A + L ++ + + E+RH Sbjct: 57 RASLAAHMQDECPR-----------ALALATYVLTWDKG--------LEALTTVLNEDRH 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + + + +PEW + +G + + A +D Sbjct: 98 APEALTEAEADRLAAAVPDDLQPWQAADVPEWLWPKFTAVFGGD-AVTEGRALAQRAPVD 156 Query: 180 LTVKF---DIETWAHKLNAVM----------LPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + V D E KL + + + G+ +G + +Q Sbjct: 157 MRVNTLKSDREKLLKKLGHTGAQGTGLSPHGMRIEAKPGLGRMPHVQAEEGYRKGWFDLQ 216 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D ++ + L G VLD CA GGKT A + + ++ A D + RL + L Sbjct: 217 DEASQLAALLAGAQPGQQVLDYCAGGGGKTLALAAAMQNKGQLYAYDADRLRLAPIHERL 276 Query: 284 DRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + + + K D V +DAPC+ TG RR PD W + Sbjct: 277 QRAGVRNIQVRDPASSTLDDLKGQMDLVFIDAPCTGTGVWRRRPDSKWKLTEKALNDRMN 336 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--AYWKS 400 Q +L +VK GG +V++ CSL +++ + + + L ++ + L+S A Sbjct: 337 DQVHVLDNAKEYVKVGGRLVYATCSLLPEENADQISRFLSANADFAPVSALDSWTAMLPG 396 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++ G + +TP S+ DGFF L R Sbjct: 397 KPVPAYVTERGDLTLTP--------ASTKTDGFFIAILERTA 430 >gi|303257735|ref|ZP_07343747.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderiales bacterium 1_1_47] gi|302859705|gb|EFL82784.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderiales bacterium 1_1_47] Length = 489 Score = 187 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 98/468 (20%), Positives = 181/468 (38%), Gaps = 57/468 (12%) Query: 1 MKSGMN--AR-------LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA 51 MKS N R ++ L +++ L+ L + ++ L R++ ++ Sbjct: 1 MKSTHNGEVRITSLIVDELA-KALRKILKLDGPADVLMSLYFKNARH--LGPRERTIIAE 57 Query: 52 IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 + T+R L I + V P K L LL +++ Q + D + E Sbjct: 58 AIYYTMRHLSMITWRMAPVC----PAKAPKLTGLLTLAL-QYGIDSIPDSTLGRE-KEPL 111 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 K ++ + +P+W ++ Y + L + Sbjct: 112 KNMLRPKNS------------------EAPKEIQAEVPKWLYDKAVVQYTDHKALFEAMQ 153 Query: 172 CISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWW 224 +PL + + +K + +L + + ++ P + EG Sbjct: 154 QSAPLDLRVNTLKATPDEVIEELTQHGVQAEKGQYSPECVRLNIKPALTQWPIYKEGKVD 213 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRC 281 VQD + + +L V D CA GGKT L+ S ++ A DV+++RL L Sbjct: 214 VQDEGSQLIARLVQPKRGEMVCDFCAGAGGKTLALGALMKSTGRIYAFDVNEKRLAGLTP 273 Query: 282 NLDRLHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + R L E D D VLVDAPCS TGT RR+PD+ W +++ Sbjct: 274 RMRRAGLSNIHPAVIRNEHDLRVKRLYGKMDRVLVDAPCSGTGTYRRNPDLKWRFGEEEL 333 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q+ ++ +K GG +V++ CS+ ++++++V+ L +P L ++Y Sbjct: 334 DRINEIQKSVIRSAAKMLKAGGRLVYATCSILQRENQDVINDFLAENPDFRLL----NSY 389 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + +SP R + +G DGFF L ++ +P+ Sbjct: 390 EILGKQGIEISPYQAQRF--GDFFAMLPQLNGTDGFFGAVLEKV-KPE 434 >gi|293606189|ref|ZP_06688553.1| rRNA small subunit methyltransferase B [Achromobacter piechaudii ATCC 43553] gi|292815449|gb|EFF74566.1| rRNA small subunit methyltransferase B [Achromobacter piechaudii ATCC 43553] Length = 470 Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 94/448 (20%), Positives = 158/448 (35%), Gaps = 59/448 (13%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L +++ L L RD+ V V LR L R S Sbjct: 1 MLGEILQWTYPADAALSHWLRHHP--NLGARDRSEVAEAVYDVLRHLRRY----RQFGES 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + + ++L + + ++ ++ A+ + + Sbjct: 55 GV---GPASRRLAILGL-----NATLGAEALEEGLDAAEAEWL-------------KRVS 93 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + A IP+W ERL + + +A +DL V + + Sbjct: 94 QIDLSTLPRAVRGSIPDWLDERLALMDSPDT---LVEALNRQASLDLRVNPLKVERDAML 150 Query: 191 HKLNAVMLPTG--------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 +L E +I P F G VQD + + L Sbjct: 151 AELQQSAGRYEPVAMPFSPWGIRMEGRPAINRWPQFENGSIEVQDEGSQLLALLVAPRRG 210 Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGKT L+ S ++ A DVS RL + + R L + E Sbjct: 211 EMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVVIDSE 270 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 DA VLVDAPCS GT+RR+PD+ W + + + Q ++L V Sbjct: 271 NDARVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQALAELGQLQERILNSAARCV 330 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 PGG +V++ CSL +++E ++ L S P L + ++ + ++++ Sbjct: 331 APGGRLVYATCSLLAEENEVQAERFLASHPDFERLDAAEILASRCENLKL---EGPYLQL 387 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 PD+ G DGFFA R + Sbjct: 388 RPDV--------HGTDGFFAAVFERKKK 407 >gi|223994911|ref|XP_002287139.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976255|gb|EED94582.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1014 Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 121/508 (23%), Positives = 208/508 (40%), Gaps = 83/508 (16%) Query: 7 ARLVSSHLLS--CVMRKRISLTCL---LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ + L+ + D + + RD+ R +V R L Sbjct: 513 ARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHYNEMEARDRAFARLLVATVERRLG 572 Query: 62 RIDAVLDFVLISSLPRK---KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE-- 116 +ID VL + P+K + +Q LR VAQ+L+LD +A V+ + Sbjct: 573 QIDGVLGSCIEKYPPKKGKHSHLIQATLRTGVAQLLFLDTPPFAANKETVQVLRMHHHLS 632 Query: 117 -------NRHFAKLVNSILRRVSREKIELLQRIAGISIIPE------------------- 150 K VN + R++S + ++ IP+ Sbjct: 633 KTSTYPVPEPMVKFVNGVFRKLSEPLAADIDEMSTDDDIPKHLFGHQLLRESTTSKDNIA 692 Query: 151 -WFKERLENFYGKERVLAISDACIS------PLYIDLTVKFDIETWAHKLNAVMLPTGG- 202 W +R EN +G + I + + IDL+ K+ + K + + Sbjct: 693 PWLLKRWENDWGDDLATLICEEMMPVDESSFTPRIDLSTKYSLGVVLKKQDDEGMMQQML 752 Query: 203 ---------------IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV-- 245 L + S PG+ +G WWVQDAS+++P + Sbjct: 753 EELGGDSTLLSQGSIRVGTSLKGDVKSWPGYDDGTWWVQDASSTLPALVLSQALYDKNGS 812 Query: 246 ----------LDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLY-AEDI 293 +D+CAAPGGKTA L+ +G +VTA++ + RR +L NL+RL L + Sbjct: 813 DESVLSDINVVDMCAAPGGKTAALLSAGFGRVTAIEANARRSRRLVENLERLKLSEKCQV 872 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI- 352 + + ++ P + +LVD PCS+TGT R PDV R ++ + Q L Sbjct: 873 VVEEGQNWIPSEKVHGILVDVPCSATGTGARRPDV--LRRDPNLKELLTIQEILANHCAD 930 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + + GG++V++ CS+ K++SE+ V K+++ +E +P+ + A + GW Sbjct: 931 NVLDEGGLMVYATCSILKEESEDQVHKLIKR--GSMETLPIQPHEVPGFEGA--IDENGW 986 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+ P +L+ DGFF L + Sbjct: 987 LRVLPGVLKGDLRS---TDGFFVARLVK 1011 >gi|257094375|ref|YP_003168016.1| Fmu (Sun) domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046899|gb|ACV36087.1| Fmu (Sun) domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 418 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 100/444 (22%), Positives = 157/444 (35%), Gaps = 55/444 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LLS ++R ++ + L D+ V IV LR + A Sbjct: 14 LLSELLRSAFPADLVVSNYFRQHR--ELGHADRGFVAEIVFAVLRRKRSLSA---RCADE 68 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R+ + ++A + A ++ Sbjct: 69 VTSRRLLLAALACLQG---MNRRELAVVLNESESKWLA-------------------HAK 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 +A +P+W L + E + ++ P +DL V + Sbjct: 107 AVKVDGLPVAVRLDLPDWLYALLTEQFSAEEIERLAAGLNQPAPLDLRVNSLKAGRQDVL 166 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 +L A L L + P F +G VQD + + L Sbjct: 167 ARLLADGLTAEACPYSPLGIRLAGKPALSKYRLFVDGSIEVQDEGSQLLGFLLQPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V D CA GGKT L+ S ++ A DV++RRL +L+ L R L + E D Sbjct: 227 VADFCAGAGGKTLLLGALMRSQGRLYAFDVAERRLARLKPRLARSGLSNVHPVRIDSERD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D VLVDAPCS GT+RR+PD+ W + I + + Q +L + VKP Sbjct: 287 IKIRRLAGKLDRVLVDAPCSGLGTLRRNPDLKWRQTPGSIAEMSTKQAVILAAAATLVKP 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL + ++EEVV+ L P V + I + +R+ P Sbjct: 347 GGRLVYATCSLLEAENEEVVRSFLAGHPEFVTCSAQEVLATQGIMIDCGER----LRLLP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 G D F+A + R Sbjct: 403 H--------RHGTDAFYAAVMERK 418 >gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales bacterium 1_1_47] gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella excrementihominis YIT 11859] gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales bacterium 1_1_47] gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella excrementihominis YIT 11859] Length = 434 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 188/436 (43%), Gaps = 36/436 (8%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 +K +S+ +L+ ++ ++++ +R + + ++ + Sbjct: 21 KKGLSIEKVLEGLPK-------DSENRSACQSVLYTAVRQRALLQKLSSDLISRAPAD-- 71 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 + L+ +++ + + VV+ AV AK ++ A VN+ILRR REK ELL Sbjct: 72 -DVLALIELALGLLSEGKEKPFTVVNEAVAAAKHSRKMVKAANFVNAILRRFGREKTELL 130 Query: 140 QRIAGISII----PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI---ETWAHK 192 + + P+W+ R E+ I + L V E K Sbjct: 131 VKAEKQPTVRFNAPDWWIRR-YEAVFGEQTPEIFALQQKHPPMTLRVNTGKTSVEEAQAK 189 Query: 193 LNAVMLPTG----GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 L +P + P + +PGF EG VQDA + + +L + VLD Sbjct: 190 LEKAGIPAERVGKFGLILLSPRPVKDVPGFLEGEVSVQDAGSQLAAELLDAKEGMRVLDA 249 Query: 249 CAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKK 305 CAAPGGKTA + + +TAL++ +R ++ NLDRL L A D + + Sbjct: 250 CAAPGGKTAHSLELADVDMTALEIDPKRASRITENLDRLGLKAKVTVADAGDPKKWWDGR 309 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 F+ +L+DAPC+++G +RRHPD+ W+R +DI K A Q KLL + G ++++ Sbjct: 310 PFERILLDAPCTASGIVRRHPDIPWSRKPEDIAKLARTQGKLLETMWPLLANNGRILYAV 369 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ ++ ++ P +L+P+ + ++ A PE + P Sbjct: 370 CSVFPEEGPRGIEAFCARHP-DAKLIPIGPEGENLLSLSPAEGPETPGSVWPAT------ 422 Query: 426 VSSGMDGFFAVALRRL 441 DGFF L ++ Sbjct: 423 ----HDGFFYALLEKI 434 >gi|197104882|ref|YP_002130259.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Phenylobacterium zucineum HLK1] gi|196478302|gb|ACG77830.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Phenylobacterium zucineum HLK1] Length = 425 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 89/449 (19%), Positives = 153/449 (34%), Gaps = 50/449 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ + + + L + + +D+ V +V LR + + Sbjct: 8 AAAIEVLTEIEARHRPVRLALKAWGEAARYAG--AKDRAFVSGLVLDVLRRRRSLAWRMG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + LR D + A A+ + + L Sbjct: 66 E------EGPRAAALGALR------FLWDWPLERI---AEAAAEDPHGPGPLSDAERAAL 110 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA------------ISDACISPL 176 A P+W +G+ R + + Sbjct: 111 ETPRDLADAPP---AVRGDYPDWLDAGFARAFGEARAEEGAALAERAPVDLRVNTLKTDP 167 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 L +E + L ++ ++P F++G + VQD + I Sbjct: 168 ERALKALASVEARPTGVLPTALRIAAPDPAARGGAVEAIPQFSKGWFEVQDLGSQIAASA 227 Query: 237 FGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 G + VLDLCA GGKT A + + ++ A D RRL DR + Sbjct: 228 AGEVKGAQVLDLCAGGGGKTLALAAAMGNTGQIYAYDSDARRLTDTVRRGDRAGARNLQV 287 Query: 294 IEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + D V VDAPC+ TG+ RRHPD W + + + Q ++L Sbjct: 288 RSPVNPEPLKGLEGRMDVVFVDAPCTGTGSWRRHPDTKWRLTPEALARRQAEQDQVLDDA 347 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 FVK GG +V+ CS+ ++ E+ V+ L+ + A +A L+P G Sbjct: 348 ARFVKAGGRIVYVTCSVLPEEDEDRVEAFLQRHSGFARRAATDQAN-----LADYLTPAG 402 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R++P +SG DGFF L + Sbjct: 403 DLRLSP--------RTSGTDGFFVAVLEK 423 >gi|315230766|ref|YP_004071202.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] gi|315183794|gb|ADT83979.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] Length = 465 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 88/414 (21%), Positives = 172/414 (41%), Gaps = 35/414 (8%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV-AQILYLDVADYAVVD 105 ++ + ++ ID V++ ++ + L+ LRV V + + Sbjct: 65 RMLTMLFYDIMKKQGLIDRVINDIVGVNPLILDPWLRAALRVVVDVSLFHHSKPGTLKAL 124 Query: 106 LAVEQAKRDKENRHFAKLVNSILR----RVSREKIELLQRIAGISIIPEWFKERLENFYG 161 + + + + R + + I P W R++ G Sbjct: 125 KWKGSDFISSKTHPYVGMYYWDIFDKVIRYKPRPKSRDEFLEWKYIAPIWLIRRIKKLLG 184 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG---- 217 +E + + V T + A+ +++ E +IV + G Sbjct: 185 EETEQFFQAVNSKHSWTSIRVNTLKTTVDEVVEALRSEGKEVKVSERVPTIVKIKGPYDF 244 Query: 218 -----FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTAL 269 F EG VQ+ ++++ + ++V+DL AAPGGKT+ + + + K+ A Sbjct: 245 DRSKLFREGKILVQEEASAVASLILDPKPGMTVVDLAAAPGGKTSHIAELMRNKGKIYAF 304 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHP 326 D+ + R+++++ L R+ + II D + + D VL+DAPC+S+GTI ++P Sbjct: 305 DIDEFRIKRMKEILKRMGVNIVKIIRKDGRKAPKILGRGIADRVLLDAPCTSSGTIGKNP 364 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 ++ W + I++ A Q+ LL +KPGG ++++ CSL +++EE ++ L + Sbjct: 365 ELRWRLRENKILEIAELQKDLLKVAAQLLKPGGRLLYATCSLFPEENEENIEWFLGTY-D 423 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+PLN Y +S + +G +R P G GFF L + Sbjct: 424 NFRLIPLNGPYDESPLL------KGTMRAYPH--------RHGTIGFFYALLEK 463 >gi|224457583|ref|ZP_03666056.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. tularensis MA00-2987] gi|254371058|ref|ZP_04987060.1| sun protein [Francisella tularensis subsp. tularensis FSC033] gi|254875277|ref|ZP_05247987.1| SUN protein [Francisella tularensis subsp. tularensis MA00-2987] gi|151569298|gb|EDN34952.1| sun protein [Francisella tularensis subsp. tularensis FSC033] gi|254841276|gb|EET19712.1| SUN protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 426 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 191/448 (42%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A + + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112 Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R I + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREMTRNIEYITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|241758624|ref|ZP_04756738.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria flavescens SK114] gi|241321135|gb|EER57331.1| putative ribosomal RNA small subunit methyltransferase B [Neisseria flavescens SK114] Length = 419 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 85/446 (19%), Positives = 163/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEETEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + P +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWSEEEILAFGRSINQPAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDTRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G +V++ CS+ +++E V++ L P ELV + + L ++R+ Sbjct: 345 KPQGRLVYATCSVLPEENELQVERFLSEHP-KFELVNCAELL---QSLKIDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + DGFFA L+R Sbjct: 401 --------NSGEHQTDGFFATVLQRK 418 >gi|221199260|ref|ZP_03572304.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2M] gi|221205838|ref|ZP_03578853.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2] gi|221211481|ref|ZP_03584460.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD1] gi|221168842|gb|EEE01310.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD1] gi|221174676|gb|EEE07108.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2] gi|221180545|gb|EEE12948.1| putative ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2M] Length = 421 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 96/445 (21%), Positives = 156/445 (35%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRLT-------LLGLMQ------------------TMGRNALKPFVSPAEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWA 190 + + + +P+W ++ L + E + ++ A P +DL E Sbjct: 107 KIDPASLPVRIRTNLPDWIQQALSTRFDAEELAQLAAALNYPAPLDLRANVLKATREQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F EG VQD + + L Sbjct: 167 DALRANGIDAGETPFAPHGVRVVGKPALTRLKLFEEGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + + + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSVDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-DFVLVPAQKVL---ADQRIELETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|331000980|ref|ZP_08324616.1| putative ribosomal RNA small subunit methyltransferase B [Parasutterella excrementihominis YIT 11859] gi|329569755|gb|EGG51519.1| putative ribosomal RNA small subunit methyltransferase B [Parasutterella excrementihominis YIT 11859] Length = 507 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 98/468 (20%), Positives = 181/468 (38%), Gaps = 57/468 (12%) Query: 1 MKSGMN--AR-------LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA 51 MKS N R ++ L +++ L+ L + ++ L R++ ++ Sbjct: 19 MKSTHNGEVRITSLIVDELA-KALRKILKLDGPADVLMSLYFKNARH--LGPRERTIIAE 75 Query: 52 IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 + T+R L I + V P K L LL +++ Q + D + E Sbjct: 76 AIYYTMRHLSMITWRMAPVC----PAKAPKLTGLLTLAL-QYGIDSIPDSTLGRE-KEPL 129 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 K ++ + +P+W ++ Y + L + Sbjct: 130 KNMLRPKNS------------------EAPKEIQAEVPKWLYDKAVVQYTDHKALFEAMQ 171 Query: 172 CISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWW 224 +PL + + +K + +L + + ++ P + EG Sbjct: 172 QSAPLDLRVNTLKATPDEVIEELTQHGVQAEKGQYSPECVRLNIKPALTQWPIYKEGKVD 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRC 281 VQD + + +L V D CA GGKT L+ S ++ A DV+++RL L Sbjct: 232 VQDEGSQLIARLVQPKRGEMVCDFCAGAGGKTLALGALMKSTGRIYAFDVNEKRLAGLTP 291 Query: 282 NLDRLHLYAEDI----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + R L E D D VLVDAPCS TGT RR+PD+ W +++ Sbjct: 292 RMRRAGLSNIHPAVIRNEHDLRVKRLYGKMDRVLVDAPCSGTGTYRRNPDLKWRFGEEEL 351 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q+ ++ +K GG +V++ CS+ ++++++V+ L +P L ++Y Sbjct: 352 DRINEIQKSVIRSAAKMLKAGGRLVYATCSILQRENQDVINDFLAENPDFRLL----NSY 407 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + +SP R + +G DGFF L ++ +P+ Sbjct: 408 EILGKQGIEISPYQAQRF--GDFFAMLPQLNGTDGFFGAVLEKV-KPE 452 >gi|134301576|ref|YP_001121544.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. tularensis WY96-3418] gi|134049353|gb|ABO46424.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. tularensis WY96-3418] Length = 426 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 191/448 (42%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A + + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112 Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R I + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREMTRNIEYITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IRAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|323359995|ref|YP_004226391.1| tRNA and rRNA cytosine-C5-methylase [Microbacterium testaceum StLB037] gi|323276366|dbj|BAJ76511.1| tRNA and rRNA cytosine-C5-methylase [Microbacterium testaceum StLB037] Length = 457 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 104/463 (22%), Positives = 166/463 (35%), Gaps = 41/463 (8%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR V+ +L V LL L +D L + TLR DA+ Sbjct: 6 ARAVAYEVLRAVSGDEAYANLLLPHAIVR---ANLDAKDAGLATELTYGTLRRRGTYDAI 62 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + ++ R ++ LR+ V Q+L VA +A V+ +VE A+R R A N+ Sbjct: 63 IAAAADRTVDRIDPAVLDALRLGVHQLLSTRVASHAAVNESVELARRHGGGRGAAGFANA 122 Query: 127 ILRRVSREKIELLQRIAGI------------SIIPEWFKERLENFYGKE----RVLAISD 170 +LRRVSR+ + P W L E + A+ D Sbjct: 123 VLRRVSRDTPGEWMDRIAATARSDDERIGVTTSHPVWIVRALRRALTAEGRADELGALLD 182 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQD 227 A + + + A + + I + G Sbjct: 183 ADNVAPRVAMVALPGLAEAPADATAARFAPTAFTTRGGGDPEGLIRASEGRIRVQDEGSQ 242 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +A + LDLCA PGGKTA L A + + R L R Sbjct: 243 LAALALSRALPIREGERWLDLCAGPGGKTALLAAEALAHGA-HLDANEIAPARAGLVRQA 301 Query: 288 LY----AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + D+ E D D + +D +LVDAPC+ G +RR P+ W + D+ Sbjct: 302 VASVPLDVDVSEEDGRDRAARAPGEYDRILVDAPCTGIGALRRRPEARWRKTPSDVPDLT 361 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--AYWK 399 Q++L+L +KPGG+V + CS ++ V+ +V R+ VE + + Sbjct: 362 ALQQELVLAAFEALKPGGVVAYVTCSPHLAETSGVLAEVKRALGDSVEELDARAVVRSVA 421 Query: 400 SIDMAMALSPEGWIR--ITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + +G +R + P G D LR+ Sbjct: 422 LAEIDLPDQADGSLRAQLWPH--------RHGTDAMSIALLRK 456 >gi|224824670|ref|ZP_03697777.1| Fmu (Sun) domain protein [Lutiella nitroferrum 2002] gi|224603163|gb|EEG09339.1| Fmu (Sun) domain protein [Lutiella nitroferrum 2002] Length = 418 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 97/450 (21%), Positives = 159/450 (35%), Gaps = 63/450 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L ++R +L + + A L D+ ++ LR ++ AV+ Sbjct: 13 VLGKMVRFDRPADAVLSAYFREHA--NLGANDRHVIAETAFACLRRFSQLKAVIAP--QK 68 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN-RHFAKLVNSILRRVS 132 PR R+++A A+ N + F + R Sbjct: 69 PTPR---------RLALA-----------------TLARVRGLNLKEFGGSLKEEERNWV 102 Query: 133 REKIELLQRI--AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 E A + +P W ERL E+++A+ I +DL V + Sbjct: 103 AELKGKTLPDELAVQAELPAWVIERL-AEDTPEQIIALGRGMIESAPLDLRVNTLKMKRD 161 Query: 188 TWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 L ++ P F +G VQD + + + G Sbjct: 162 DALLALRRDGFEAEPTPFSPIGIRLKGKPALNRHPLFKDGSIEVQDEGSQLLGLITGARR 221 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294 V+D CA GGKT + S ++ A DVS++RL + R L Sbjct: 222 GEMVVDFCAGAGGKTLLLGAQMASTGRLYAFDVSEKRLANFKPRQARSGLSNVHPQLIAH 281 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D D VLVDAPCS GT+RR+PD+ + + + + + Q +L Sbjct: 282 ENDTRVKRLAGKADRVLVDAPCSGLGTLRRNPDLKFRQSPESVAELNAKQASILASASRL 341 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GG +V++ CSL Q+++ +V+ L P LVP++ + Sbjct: 342 VKAGGRLVYATCSLLPQENQAIVEAFLAEHP-DFTLVPVSDVLAEQKIPLEM-------- 392 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + DGFFA L + +P Sbjct: 393 ---GDYLALRPDRHNTDGFFAAVLAK-QKP 418 >gi|118497926|ref|YP_898976.1| tRNA and rRNA cytosine-C5-methylases, sun protein [Francisella tularensis subsp. novicida U112] gi|194323149|ref|ZP_03056933.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. novicida FTE] gi|118423832|gb|ABK90222.1| tRNA and rRNA cytosine-C5-methylases, sun protein [Francisella novicida U112] gi|194322513|gb|EDX19993.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. novicida FTE] Length = 426 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A +D + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREITRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QTKDTKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILTNLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKQFLAKN---------NNAKIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2] gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2] Length = 451 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 94/413 (22%), Positives = 174/413 (42%), Gaps = 38/413 (9%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I ++ ID V+ ++ + L+ LRV+V +L+ D + + Sbjct: 55 LTKIFYDIMKKQGLIDKVIKDIVGVTPLILDPWLRAALRVTVDIVLFHD-PNSHTIKNLR 113 Query: 109 EQAKRDKENRHFAK------LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162 +A +R + + + L+++ + P WF +R++ G+ Sbjct: 114 WKASDFISSRTHPYVGMYFWDLIDKILEYKPSPKDELEKLEWEYLAPAWFIQRVKKILGE 173 Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL---------KELPESIV 213 E +I + V + + + + P + Sbjct: 174 ETEQFFKAVNEKHEWISIRVNTLKADVEEIIEELEEEGVEVIRSERVPTILKIKGPYNFD 233 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 S F +G VQ+ ++++ + V+DL AAPGGKT + + + K+ A D Sbjct: 234 SSKAFKKGKIIVQEEASAVASIVLNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFD 293 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPD 327 + K R+++L+ + R+ + I DA +++ D VL+DAPC+S+GTI ++P+ Sbjct: 294 IDKMRMKRLKEFVQRMGIKIVKPIIKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPE 353 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W + I + A QR+LL VKPGG ++++ CS+ K+++EE ++ L + P Sbjct: 354 LRWRLREEKIKEMAELQRELLESAAKLVKPGGRLLYTTCSIFKEENEENIKWFLANHP-E 412 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +LVPLNS Y EG +R P GFF L + Sbjct: 413 FKLVPLNSPYDPGF-------LEGTMRAWPH--------RHSTIGFFYALLEK 450 >gi|187931420|ref|YP_001891404.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. mediasiatica FSC147] gi|187712329|gb|ACD30626.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. mediasiatica FSC147] Length = 426 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 101/448 (22%), Positives = 192/448 (42%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A + + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREMTRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQPFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|329909344|ref|ZP_08275055.1| putative NOL1/NOP2/sun family protein [Oxalobacteraceae bacterium IMCC9480] gi|327546487|gb|EGF31480.1| putative NOL1/NOP2/sun family protein [Oxalobacteraceae bacterium IMCC9480] Length = 420 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 101/445 (22%), Positives = 171/445 (38%), Gaps = 56/445 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L ++R L + + L R++ + + LR V Sbjct: 13 EILRDILRFTGPADGTLSRFFREHP--KLGSRERGAIAEGIYGVLRNKS----VYTSFSE 66 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S +++++ + +A + D + A + +R V Sbjct: 67 SG---NGPTMRRMTLLGLAGAVGADALGGLSEEEAAWLEHTMQIDRTLLPAV-------- 115 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETW 189 S +P+W ++L G+E LA++ A P +DL V E Sbjct: 116 -----------MRSNLPQWLFDKLVAREGEEGALALAAALNEPAPLDLRVNVIKASREEV 164 Query: 190 AHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L + + + +LP F +G+ VQD + + Q+ G Sbjct: 165 MAALAEAPILAEITPFSPVGLRVLKKPALQNLPLFRDGLIEVQDEGSQLLAQIVGAKRGE 224 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT + + ++ A D+S++RL KL+ L R L E Sbjct: 225 MVVDFCAGAGGKTLALGAAMRNTGRLYAFDISEKRLAKLKPRLARSGLSNVHPVQIAHEN 284 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PDV W + + + Q +L VK Sbjct: 285 DAKIKRLAGKIDRVLVDAPCSGLGTLRRNPDVKWRQTLVGVAELNVKQTSILSGAARMVK 344 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CSL +++E++V L + LVP+ + + L + ++++T Sbjct: 345 TGGRLVYATCSLLDEENEDIVSAFLSTH-ADFVLVPMKDVLAE---QRVELEMQDYLKLT 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P DGFFA R+ Sbjct: 401 PS--------QHQTDGFFAAVFERI 417 >gi|23500111|ref|NP_699551.1| sun protein [Brucella suis 1330] gi|23463705|gb|AAN33556.1| sun protein, putative [Brucella suis 1330] Length = 429 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 158/448 (35%), Gaps = 44/448 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLGEIEAGKRPASDVLKEWGAAHRFAG--AGDRAVIGNIVYDALRRKLSI----- 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + L +L D D +VD +R + +++ Sbjct: 61 ------LWRMDADDARALAFGG--LLADDGMDIEMVD------AALHGDRFAPEGLDAAR 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R + + + +PEW LE +G ER ++ A + +DL V T Sbjct: 107 RAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALATRPPVDLRVNSLKAT 165 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQ 235 L A+ E++ P F +G + VQD + + Sbjct: 166 PEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 226 FAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSPMHERLQRAGVRNTQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL DAPC+ +GT RR PD W + + + Q+ +L Sbjct: 286 VYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQQDVLDSAR 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG + + CSL +++ V + L +P E+ P D + Sbjct: 346 RFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGTVVQDDSAGKP---- 401 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +S+G DGF+ L+R Sbjct: 402 --VFLSHGSVFSPLSTGTDGFYVSILQR 427 >gi|332529827|ref|ZP_08405781.1| fmu (sun) domain protein [Hylemonella gracilis ATCC 19624] gi|332040848|gb|EGI77220.1| fmu (sun) domain protein [Hylemonella gracilis ATCC 19624] Length = 428 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 154/457 (33%), Gaps = 64/457 (14%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + + L+ ++ ++ + D L R++ + LR + + Sbjct: 9 LCAELVRLTLKFEHPADAVVSHFFRDHR--GLGPRERATLAETAYAVLRKKLLFERL--A 64 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + S + R+++ +V+ +Q Sbjct: 65 LSGSGPKER--------RLAILGFSGSRDFIKSVLSEQEKQW-----------------L 99 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 +P+W + L+ + A++++ +D+ V Sbjct: 100 DACDGVKPDELLDQHRHNLPDWLAQPLKTQLSDKDFWALAESLNQSAGLDVRVNTLNSKR 159 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240 E +L A + I P F G VQD + + L Sbjct: 160 EDVQRELKAAGITAQPTPYCPWGLRIADKPALNKLDVFTRGAIEVQDEGSQLLALLVEAK 219 Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT + + ++ A D S RL+ L+ L R L Sbjct: 220 RGEMVVDFCAGAGGKTLALGAAMRNTGRLYAFDTSAHRLDALKPRLARSGLSNVHPAAIA 279 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + + + A Q +L Sbjct: 280 HERDERVKRLSGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVQEMAAKQTAILDSAAR 339 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--- 410 +K GG +V++ CS+ +++E V + + P E VP+ + + +A + Sbjct: 340 LLKSGGRLVYATCSVLPEENEAVAEAFSAAHP-DFEPVPVADLLERLLAPPVAKTASELC 398 Query: 411 -------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++R+ P DGFFA + Sbjct: 399 SGGESGRNYLRLWPH--------QHNTDGFFAAVWHK 427 >gi|148261637|ref|YP_001235764.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5] gi|146403318|gb|ABQ31845.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5] Length = 415 Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 154/442 (34%), Positives = 218/442 (49%), Gaps = 31/442 (7%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M G R + LLS V+ +R L L + ++ RD+ I LR Sbjct: 1 MTKTGGDPTRDAAFALLSAVLDRRAPLDAAL------AGLADIAPRDRAAAHRIAAAVLR 54 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 L +DA+L+ L + P ++ +LR+ AQ+ L +A V AV A + Sbjct: 55 RLGSLDAILEPHLRRAPP---APVRHILRIGAAQLALLGAPAHAAVSTAVGLAHARGLGK 111 Query: 119 HFAKLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 FA LVN++LR+VS + L+ + P W AI+ Sbjct: 112 -FAGLVNAVLRKVSADGAAALEALDSPRLDTPAWLWASWGAA-----ARAIATTHQGEAP 165 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 +DLT+ + A LPTG +RL + L G+A G WVQDA+A++P +L Sbjct: 166 LDLTL---KDGAAVPEGGERLPTGSVRLPAGT-DVTQLYGYAAGTLWVQDAAAALPARLL 221 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 G + VLDLCAAPGGKTAQL +GA VTALD RRL +LR NLDRL L AE + D Sbjct: 222 GDVAGRRVLDLCAAPGGKTAQLAAAGAAVTALDRDARRLARLRENLDRLGLAAETV-AAD 280 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D+ P + FDA+L+DAPCS+TGTIRRHP++L R DI A Q +LL + + P Sbjct: 281 ALDWRPAQRFDAILLDAPCSATGTIRRHPEILHLRRPRDIETCAALQDRLLDAAAAMLAP 340 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL ++ ++ + L + +A A++P G + P Sbjct: 341 GGTLVYAVCSLQPEEGARRIEAACGR----LGLRRAPLGAAELPGLAEAVTPAGDLATHP 396 Query: 418 DMLEKIDGVSSGMDGFFAVALR 439 M + GMDGFFA L+ Sbjct: 397 GMWAE----RGGMDGFFAARLQ 414 >gi|254294173|ref|YP_003060196.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814] gi|254042704|gb|ACT59499.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814] Length = 435 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 160/450 (35%), Gaps = 44/450 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + +L+ V+ + + + + +D+ V +V LR + + Sbjct: 9 AAISVLTDVLTRHQPVKSAAKDWGKRARYAG--SKDRAWVSGLVLDALRNKLSLAHAMG- 65 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + L+ ++ + D+ VD A +Q H + R Sbjct: 66 -SDEP--------RALVLGALTHVWKWDI---GRVDEAFDQ-------DHAPSALTLDER 106 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + + PEW +E +G+E V+ + + +DL + Sbjct: 107 ERLVMAPDPVAPAHVRGDYPEWMHGMMERAFGEEAVIEAQEMAVRAP-VDLRINTLKAEV 165 Query: 190 AHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQL 236 A+ S+ S+P +++G VQDA + + Sbjct: 166 EKVEKALRSVHAEPIPTLKNGYRIPAPDPSVRANSVESIPAYSKGWVEVQDAGSQMAAAG 225 Query: 237 FGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 VLD CA GGK A + + ++ A D+ RRL + L R + Sbjct: 226 ANAQPGEQVLDYCAGGGGKSLAMASTMQNKGQIYAYDIEGRRLSAMIPRLQRAGARNVQL 285 Query: 294 IEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + D V++DAPCS GT RR PD W + + Q ++L + Sbjct: 286 RHPQEDKGLNDLELNMDLVIIDAPCSGVGTWRRRPDSKWRLKENSLNLRRQQQTEILHKA 345 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +FVKPGG +++ CS +++E+ V L + ++SA A + Sbjct: 346 CNFVKPGGRLLYITCSFLMEENEDQVASFLADRSDFSQEDVVDSAIQSGQLTAEGEAM-- 403 Query: 412 WIRI-TPDMLEKIDGVSSGMDGFFAVALRR 440 R P ++ ++G DGFF +RR Sbjct: 404 MARCKRPGGSVRLTPRTAGTDGFFMALMRR 433 >gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 450 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 172/410 (41%), Gaps = 39/410 (9%) Query: 52 IVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109 ++ L+ +D V++ VL + ++ R++V ++++ D V D+ Sbjct: 53 LLYSVLQKRGLLDEVIEDVLEITDDVTELDTWVRNAARIAVNEVVFEDGDPDEVADVLHG 112 Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIA---GISIIPEWFKERLENFY-GKERV 165 +R A + L E E + P W ER + + V Sbjct: 113 LVRRLANPGAAAIVKAFTLDLKDYEPPEPEDELDRLKWEYYHPRWLIERWMEMFGDPDEV 172 Query: 166 LAISDACISPLYIDLTVKF---DIETWAHKLNAV-------MLPTGGIRLKELPESIVSL 215 +A+ +A + + V D E A +L I I + Sbjct: 173 VALLEANNRRPPLTIRVNTLKVDPEELAERLQRKYRVTVEPGRFLDEILKIPEGLPIGEM 232 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVS 272 P + EG++ +QD +A++ + V+DLCAAPGGKT + + K+ A+DV Sbjct: 233 PEWEEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGGEGKIVAIDVD 292 Query: 273 KRRLEKLRCNLDRLH-LYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDV 328 + R+E+LR +R+ L + MD + K + DAVLVD PCS+ GTI ++P+ Sbjct: 293 EVRMERLREIAERMGVLDCIETHLMDGREAPEKLGREFADAVLVDPPCSADGTIPKNPER 352 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W D++ + FQ +LL G VKPGG +++S CS+ ++ EEVV++ L P Sbjct: 353 RWRITPDELERLPKFQYELLKAGAEMVKPGGRLLYSTCSMFPEEDEEVVRRFLDEHP-EF 411 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 EL+ + + PE R+ P GFF + Sbjct: 412 ELLEVK------VGDQGFDMPEAC-RLFPH--------RHETCGFFIALM 446 >gi|121606107|ref|YP_983436.1| Fmu (Sun) domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120595076|gb|ABM38515.1| Fmu (Sun) domain protein [Polaromonas naphthalenivorans CJ2] Length = 417 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 88/444 (19%), Positives = 156/444 (35%), Gaps = 55/444 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL V++ ++ + + L R++ V + LR + Sbjct: 12 ELLKQVLKFDHPADMVVSRYFREMR---LGPRERATVAETIYGVLRKKNLYTYLAQHGSG 68 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 R +L +A + A ++E ++ + Sbjct: 69 VPERRL-----AIL-------------GFAAPRDFLYGALTEQEEDWLSRCDQVKPSDLM 110 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA-- 190 +P+W E L+ G + + ++ + +DL V + A Sbjct: 111 ELH---------RHNLPQWLVEPLKAQLGDDFW-PLVESLNTQAGLDLRVNTLKDKRADV 160 Query: 191 ------HKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + V P L+ + + ++ F G VQD + + L Sbjct: 161 QKELARAAIKTVATPYSPWGLRLEGKPQLANVDAFKRGAIEVQDEGSQLLALLVDAKRGE 220 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT + + ++ A D S RL L+ L R L E Sbjct: 221 MVVDFCAGAGGKTLALGASMRTTGRLYAFDTSAHRLAALKPRLARSGLSNVHPVAIAHER 280 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 281 DDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRHNPKAIEELTAKQTAILQSAARLVK 340 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V++ CS+ ++++E + + ++P + ++ A L ++R+ Sbjct: 341 PGGRLVYATCSILREENEAIAEAFSAANPDFQVVEAAPLLTHIGVEHADKLCRGPYLRLW 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P DGFFA ++ Sbjct: 401 P--------YLHQTDGFFAAVWQK 416 >gi|254374738|ref|ZP_04990219.1| sun protein [Francisella novicida GA99-3548] gi|151572457|gb|EDN38111.1| sun protein [Francisella novicida GA99-3548] Length = 426 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A +D + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREITRNINDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|186474810|ref|YP_001856280.1| sun protein [Burkholderia phymatum STM815] gi|184191269|gb|ACC69234.1| sun protein [Burkholderia phymatum STM815] Length = 453 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 108/448 (24%), Positives = 174/448 (38%), Gaps = 29/448 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R+ +L L + S ++ + V+ I T+R L + ++ + Sbjct: 16 AAQAVGAV-RQGAALPAALHSIFV-SLPEGVATASRGAVQDIAYRTMRRLGTAEWLVAKL 73 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + P + L L + V + + VVD AV +E+ L N++LR Sbjct: 74 VRKAPPPHVAHVLACALALLVDEASNAAYTPFTVVDQAVNAIGARRESSFAKGLTNAVLR 133 Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 RE+ + + P W+ + + N + ++ + L V Sbjct: 134 NFLRERETLLGDAQKDAVAHWNYPVWWIDAVRNAWPDAWQDILTAGNNQGP-LTLRVNAR 192 Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 T L + E P + +PGF EGV VQDA A + Q G Sbjct: 193 RATVDAYLQTLREHQISATQAGDQAVRLETPMPVDRIPGFNEGVASVQDAGAQLAAQWLG 252 Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + + VLD CAAPGGKT L+ + + AL+ R ++ NL RL L A + D Sbjct: 253 VRDGMRVLDACAAPGGKTGHLLELADIDLIALESDATRARRIGENLQRLGLSA-HVRVGD 311 Query: 298 -----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 312 AGSPEQWHDAADAPFDRILADVPCSASGIVRRHPDIRWLRRASDIPVLVEEQRRILEALW 371 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + VKPGG +++ CS+ ++ E Q V L +S Sbjct: 372 TLVKPGGELLYVTCSIFPEEGELQAQWFGNRHADAVRLDAPGQLLPAVARAPADVSAG-- 429 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G S DGFF ++ Sbjct: 430 -----SRAGQSTGSSLDHDGFFYARFQK 452 >gi|208779665|ref|ZP_03247010.1| ribosomal RNA small subunit methyltransferase B [Francisella novicida FTG] gi|208744626|gb|EDZ90925.1| ribosomal RNA small subunit methyltransferase B [Francisella novicida FTG] Length = 426 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 101/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A +D + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETVT-ACKDLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREITRNINDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 + + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKNNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILEYAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|56708432|ref|YP_170328.1| Sun protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670903|ref|YP_667460.1| Sun protein [Francisella tularensis subsp. tularensis FSC198] gi|56604924|emb|CAG46016.1| Sun protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321236|emb|CAL09399.1| Sun protein [Francisella tularensis subsp. tularensis FSC198] gi|282159623|gb|ADA79014.1| Sun protein [Francisella tularensis subsp. tularensis NE061598] Length = 426 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 101/448 (22%), Positives = 190/448 (42%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L + LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIGQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A + + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112 Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R I + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREMTRNIEYITSIYTQNKAIDMPEWLCDTLKKQYPNDHLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAEIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|325520796|gb|EGC99806.1| Sun protein [Burkholderia sp. TJI49] Length = 421 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 96/445 (21%), Positives = 157/445 (35%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + S Sbjct: 14 LLAEVLKFTGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFAHLAESGTGS 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F + Sbjct: 72 PARRLT-------LLGLMQ------------------TMGRNALKPFVSPAEAAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W ++ L N + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRIRTNLPDWIQQALSNRFEAEELAQLAAALNYPAPLDLRANALKASRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + G + L F +G VQD + + L Sbjct: 167 DALRANGIDAGATPFAPFGVRVVGKPALTRLKLFEDGQIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTSIDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-DFVLVPAQKVL---ADQRIELETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|326405127|ref|YP_004285209.1| RNA methyltransferase [Acidiphilium multivorum AIU301] gi|325051989|dbj|BAJ82327.1| RNA methyltransferase [Acidiphilium multivorum AIU301] Length = 418 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 154/442 (34%), Positives = 218/442 (49%), Gaps = 31/442 (7%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M G R + LLS V+ +R L L + ++ RD+ I LR Sbjct: 4 MTKTGGDPTRDAAFALLSAVLDRRAPLDAAL------AGLADIAPRDRAAAHRIAAAVLR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 L +DA+L+ L + P ++ +LR+ AQ+ L +A V AV A + Sbjct: 58 RLGSLDAILEPHLRRAPP---APVRHILRIGAAQLALLGAPAHAAVSTAVGLAHARGLGK 114 Query: 119 HFAKLVNSILRRVSREKIELLQR-IAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 FA LVN++LR+VS + L+ + P W AI+ Sbjct: 115 -FAGLVNAVLRKVSADGAAALEALDSPRLDTPAWLWASWGAA-----ARAIATTHQGEAP 168 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 +DLT+ + A LPTG +RL + L G+A G WVQDA+A++P +L Sbjct: 169 LDLTL---KDGAAVPEGGERLPTGSVRLPAGT-DVTQLYGYAAGTLWVQDAAAALPARLL 224 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 G + VLDLCAAPGGKTAQL +GA VTALD RRL +LR NLDRL L AE + D Sbjct: 225 GDVAGRRVLDLCAAPGGKTAQLAAAGAAVTALDRDARRLARLRENLDRLGLAAETV-AAD 283 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D+ P + FDA+L+DAPCS+TGTIRRHP++L R DI A Q +LL + + P Sbjct: 284 ALDWRPAQRFDAILLDAPCSATGTIRRHPEILHLRRPRDIETCAALQDRLLDAAAAMLAP 343 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CSL ++ ++ + L + +A A++P G + P Sbjct: 344 GGTLVYAVCSLQPEEGARRIEAACGR----LGLRRAPLGAAELPGLAEAVTPAGDLATHP 399 Query: 418 DMLEKIDGVSSGMDGFFAVALR 439 M + GMDGFFA L+ Sbjct: 400 GMWAE----RGGMDGFFAARLQ 417 >gi|16125866|ref|NP_420430.1| sun family protein [Caulobacter crescentus CB15] gi|221234628|ref|YP_002517064.1| 16S rRNA m(5)C 967 methyltransferase [Caulobacter crescentus NA1000] gi|13423020|gb|AAK23598.1| sun family protein [Caulobacter crescentus CB15] gi|220963800|gb|ACL95156.1| 16S rRNA m(5)C 967 methyltransferase [Caulobacter crescentus NA1000] Length = 425 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 94/450 (20%), Positives = 159/450 (35%), Gaps = 57/450 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + +L+ + + + L + + +D+ V +V LR + ++ Sbjct: 9 AAIEVLTEIEARHFPVKMALKRWGETARYAG--SKDRAFVSGLVLDGLRRKRSLGWMMAD 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + V + + A+ E F L + Sbjct: 67 STARGV-----------MLGV--LAFVWKWP-------LERIAEAAAEEHGFGALTDVER 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI-- 186 R++ P+W + L G ++ + A +DL V Sbjct: 107 ERLAAPVPIEGAPAPVAGDYPDWLEPHLARALGADQAAEM-RALSERAPVDLRVNTLKTD 165 Query: 187 -----------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + + A + S+ ++P F++G + VQD + I Sbjct: 166 VERCAKALALIDAAPAGVLATAFRIPAPAAADRTPSVEAVPAFSKGWFEVQDLGSQIAAA 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + G + VLD CA GGKT A + + ++ A D RRL R + Sbjct: 226 VAGDVKGKQVLDFCAGGGGKTLALAAAMGNSGQIFAHDSDARRLADTIRRGQRAGVRNLQ 285 Query: 293 IIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 I D V VDAPC+ GT RRHPD W D + K Q +L Sbjct: 286 IRSPIEATPLKGLEGKIDVVFVDAPCTGAGTWRRHPDAKWRLSPDQLAKRQIEQDSVLED 345 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +FVK GG +++ CSL +++E+ V L P ++D ++PE Sbjct: 346 AAAFVKAGGRMIYVTCSLLTEENEDRVAAFLERHPEFTV-------KPIALDGVTHVTPE 398 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G++R+TP +G DGFFA L+R Sbjct: 399 GYLRLTPH--------RAGTDGFFAAVLQR 420 >gi|304415449|ref|ZP_07396098.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus Regiella insecticola LSR1] gi|304282713|gb|EFL91227.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus Regiella insecticola LSR1] Length = 390 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 173/371 (46%), Gaps = 19/371 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +++ V+ K SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKTTYNIRAIAAKVINNVLNKGKSLSVVLPAL-----QQNISDKDRTLLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK--RDKENR 118 P ++ + +++ + KK L LL + + Q++Y + +A + V A + + + Sbjct: 56 PTLEFCIQQLMVRPMEGKKRILHYLLMIGIYQLIYTRIPAHAALAETVAGATTLKWPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLY 177 V +R +E + P W ER++ Y ++ + P++ Sbjct: 116 GLVNGVLRQFQRQQIMLLEQATNDNSHYLHPNWLLERIKKAYPEQWQQIVVANNTKPPMW 175 Query: 178 IDLT-VKFDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASA 230 + + + + L + + LP + LPGF++G VQDASA Sbjct: 176 LRVNRIHHSRSQYLALLQQAGIEAISHPVYADAIRLTLPCPVGQLPGFSQGWVTVQDASA 235 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + L N +LDLCAAPGGKT + A+V A+D+ K+RL ++ NL RL L Sbjct: 236 QGCIDLLHPKNGEYILDLCAAPGGKTTYILEVAPKAEVLAVDIDKQRLRCVKENLQRLQL 295 Query: 289 YA-EDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 A I + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Q + Sbjct: 296 QARIKIGDGRTPDIWCGEQLFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELTKLQAE 355 Query: 347 LLLQGISFVKP 357 ++ +K Sbjct: 356 IMDAIWPKIKK 366 >gi|294341635|emb|CAZ90052.1| putative rsmB (sun protein) (Fmu, rRNA SAM-dependent methyltransferase) [Thiomonas sp. 3As] Length = 459 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 110/452 (24%), Positives = 172/452 (38%), Gaps = 39/452 (8%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ V + SL+ L + + +A+ LR L A+L Sbjct: 24 ACAQLIGAV-KAGASLSTALPQAATRGKW---DASQRGAAQALSFAVLRHLGTARALLAD 79 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADY----AVVDLAVEQAKRDKENRHFAKLVN 125 + + L+ +L+ ++A +L D + VV+ AVE KR RH N Sbjct: 80 LQPKPIH--PPLLRDVLQTALALLL-PDAPAHYAAHTVVNQAVEACKRTPSLRHAQGFAN 136 Query: 126 SILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LYIDL 180 ++LRR + + + P+W+ + L++ Y + + A P + + + Sbjct: 137 ALLRRFVSRTADIEAVRMSTLEARWNHPDWWVQALQSAYPADWQSVLEVAQRQPAMTLRV 196 Query: 181 TVK-FDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + + L A LP + + ++ LPGF G VQDA+A Sbjct: 197 NPRLQSRTAYQAALAACGLPCTAPDDPLLDQALILKQAVAVERLPGFERGWVSVQDAAAQ 256 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L VLD CAAPGGKTA L + ALD +RL ++ LDRL L A Sbjct: 257 YAAALLDVQPGQRVLDACAAPGGKTAHLLERCDCDLLALDKDAQRLRRVEDTLDRLGLQA 316 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + FD +L+DAPCS++G RRHPD+ W R DI A Q LL Sbjct: 317 RTLAADAAHPATWWDGQPFDRILLDAPCSASGIARRHPDIRWLRRAADIPALAATQAALL 376 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++PGG +++ CS+ Q+ E + L + P Sbjct: 377 DALWPLLRPGGKLLYVTCSVFPQEGVEQARAFLARYADAI-ASPAPGQLLPQEPAPDQTG 435 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E DGFF + Sbjct: 436 DE----------PGPGAAIHSQDGFFYALFTK 457 >gi|118594095|ref|ZP_01551442.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181] gi|118439873|gb|EAV46500.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181] Length = 423 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 20/393 (5%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ ++ V+ +L + + + Q V+AI TLR++ + + ++ Sbjct: 6 RYAAIIIDGVLD-GNNLDHVFEKILKNPD----DSVQQSQVKAITYGTLRYMGQSNYLIG 60 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH--FAKLVNS 126 ++ + + L+ L+ V++ Q+ D+ VVD AV AK+ + ++ + Sbjct: 61 KLIKNKIE--NRVLESLIHVAIYQLTQEAHTDFTVVDQAVRAAKKIDFRKSNLVNAVLRT 118 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 LR + + P W+ ++++ Y E + + + V Sbjct: 119 FLRNKEKLIQGFAGQSESKYNYPLWWVDKMKEQYV-EHWEDVLRIGNVHPPMTIRVNKKK 177 Query: 187 ETWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLFGT 239 T + + L +++ +PGF EG + VQD A + + Sbjct: 178 ITVEKYSDILRSNNINHVLIHGNALIIDTPINVMDVPGFVEGYFSVQDYGAQLASEYLDL 237 Query: 240 LNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM-- 296 + VLD CAAPGGKT + ++ +L+ + R ++ NL RL L A+ I E Sbjct: 238 EDGHWVLDACAAPGGKTTSILESHDVRLVSLEKNPLRALRIEENLLRLGLQAKVIKEPLD 297 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + ++ FD +L+D PCS++G +RRH D+ W R D V Q +LL +K Sbjct: 298 NDNKWWDRQAFDRILLDVPCSASGIVRRHIDIKWLRRPSDFVNYGKSQLELLNNAWPLLK 357 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 G +++ CS+ ++++ +V+ + + Sbjct: 358 KNGKLLYVTCSVFQEENCDVIAAFCENHKDAIR 390 >gi|258542592|ref|YP_003188025.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-01] gi|256633670|dbj|BAH99645.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-01] gi|256636729|dbj|BAI02698.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-03] gi|256639782|dbj|BAI05744.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-07] gi|256642838|dbj|BAI08793.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-22] gi|256645893|dbj|BAI11841.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-26] gi|256648946|dbj|BAI14887.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-32] gi|256651933|dbj|BAI17867.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654990|dbj|BAI20917.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter pasteurianus IFO 3283-12] Length = 437 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 102/440 (23%), Positives = 172/440 (39%), Gaps = 44/440 (10%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 R + + + + + + D+ + +V +R R+ L+ K Sbjct: 22 RKPADAVANSFFRERRY--MGGGDRRAISGLVWDVMRAWRRLGWWLEQ--------KGQV 71 Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141 LR ++L+ D A V+ EQ R ++ + + Sbjct: 72 ASARLRAGA-RLLF-DGFSLAEVEEMFEQ-GRFAAGALTRGELSILTPLAGKTLDNPEMP 128 Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--------DIETWAHKL 193 A +P+W L + +++ A +P +DL V L Sbjct: 129 RAVRLELPDWLLPHL-DATFGDKLEDELAAMSAPAPLDLRVNILRGPRKEAQRSLACEGL 187 Query: 194 NAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 +A P L+ + + F +G+ +QD + + + G + VLD CA Sbjct: 188 HAEPTPLSPWGLRLPARLPVTTSVAFRDGLVEIQDEGSQLVAAISGVEPQMRVLDYCAGA 247 Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKKL 306 GGK A ++ + + A DVS RLE L R ++ + D + Sbjct: 248 GGKTLAMAMMMENKGHIVACDVSAPRLEGAVKRLRRAGVHNVERHLLVPGDKWAKRRAGS 307 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VLVDAPCS TGT RR+PD + D+ + Q ++ + + V+ GG +V++ C Sbjct: 308 FDRVLVDAPCSGTGTWRRNPDARFRTTEQDLTELLEKQAAIMDRAAALVRAGGRMVYATC 367 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL + ++ + V L P +LVP + S DM AL E I +TP + Sbjct: 368 SLLRAENMDQVAAFLARHP-DFKLVPSD-----SPDMPEALRKESSISLTP--------L 413 Query: 427 SSGMDGFFAVALRRLI-QPK 445 G DGFFA + R +P+ Sbjct: 414 RDGTDGFFAAVMERAAPEPE 433 >gi|206561059|ref|YP_002231824.1| NOL1/NOP2/Sun family protein [Burkholderia cenocepacia J2315] gi|198037101|emb|CAR53022.1| NOL1/NOP2/Sun family protein [Burkholderia cenocepacia J2315] Length = 421 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 95/445 (21%), Positives = 154/445 (34%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F S Sbjct: 72 PARRLT-------LLGLMQ------------------TVGRNALKPFLSDTESAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W + L + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSERFDAEELAQLAAALNYPAPLDLRANAQKASRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + G + L F EG VQD + + L Sbjct: 167 EALRVSGIDAGATPFAPFGVRVVGKPALTRLKLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A DVS++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDVSEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-DFVLVPAQKVL---ADQRIELETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|152980769|ref|YP_001354259.1| Sun family protein [Janthinobacterium sp. Marseille] gi|151280846|gb|ABR89256.1| Sun family protein [Janthinobacterium sp. Marseille] Length = 418 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 168/445 (37%), Gaps = 56/445 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L ++R L + D L R++ +V V LR AV Sbjct: 13 EVLREILRFTGPADGTLSRYFRDHP--KLGSRERGVVAEAVYGLLRNK----AVYTSFAE 66 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S +++++ + +A + ++ + Sbjct: 67 SG---NGPTMRRMTLLGLADAVGVESLGGLTEEETEWL-------------------NHV 104 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETW 189 + L S +PEW E+L G+ L ++ A P +DL V E Sbjct: 105 MQIDRTLLPSLLRSNMPEWLFEKLVARDGEAAALELAHAVNQPAPLDLRVNAIKATREDV 164 Query: 190 AHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L + ++ +LP F G VQD + + Q+ G Sbjct: 165 IMALAEAPILCEPTPYAPLGIRIIKKPALQNLPLFKNGSIEVQDEGSQLLSQIVGAKRGE 224 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEM 296 V+D CA GGKT + + ++ A D+S++RL KL+ L R L E Sbjct: 225 MVVDFCAGAGGKTLSLGAAMRNTGRLYAFDISEKRLAKLKPRLARSGLSNVHPVQIAHEN 284 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PDV W + +V+ Q +L VK Sbjct: 285 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDVKWRQTPQSLVELNEKQASILAGAARLVK 344 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++E +V L S L+P++ + + L + +++++ Sbjct: 345 AGGRLVYATCSILDEENEAIVASFLASR-DDFVLIPMSEVLAE---QKIDLKMDDYLKLS 400 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P DGFFA L R Sbjct: 401 P--------ALHHTDGFFAAVLERK 417 >gi|139436886|ref|ZP_01771046.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC 25986] gi|133776533|gb|EBA40353.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC 25986] Length = 466 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 87/471 (18%), Positives = 166/471 (35%), Gaps = 39/471 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L R+ + +L ++ + + QRD + Sbjct: 1 MSKLSPARKLALDVLMEADRRGMYARDVLS---SRASAKAIDQRDSAFAARLALGVAATQ 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D +LD L + ++ LR+S ++LYL V VE + + Sbjct: 58 GILDELLDQFLDKP-KKVAPRVRMALRISAFEMLYLHTPGRVAVSQGVELVRS--GAKSA 114 Query: 121 AKLVNSILRRVSREKIELL------------QRIAGISIIPEWFKERLENFYGKERVLAI 168 A L N++L +V+ + R++ + +P W R+ + Sbjct: 115 AGLANAVLHKVADNVEDFAAASDVDESERRLVRLSRLMGLPRWLCARIMASFDTPEGALS 174 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 ++P + L ++ ++ P + + G E V Sbjct: 175 FAGNLAPAPLALHENAFATKPDPYISQLIAPVFPGCHAPVDAQVTVASGVFERAAAVASD 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV------SGAKVTALDVSKRRLEKLRCN 282 + S L++ A G KT ++ + TALD+ R+ + Sbjct: 235 LNAQL-IATAATRPGSCLEIGAGRGTKTYVMMCQAKRAGYERQHTALDLHDRKCDLNLAR 293 Query: 283 LDRLHLYAEDIIEMDAF-----------DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 L + + + DA FD V +DAPCS TGT+RRHP++ W Sbjct: 294 LHKAGIRGVRTVSGDACELDEVLTSFDAMLGETVKFDTVFIDAPCSGTGTMRRHPEIPWR 353 Query: 332 RDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVE 389 +D + Q +L + + V GG ++++ CS+ ++S ++V L S Sbjct: 354 LTENDVTAELPKLQLTMLKEAATRVAAGGELIYATCSVFDEESTQLVDAFLASPEGAGFS 413 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITP-DMLEKIDGVSSGMDGFFAVALR 439 + PL+ A + +R + + + + DG F L Sbjct: 414 VAPLSKAQILQLPEFDQAKKLVSVRQNDRGLFQSVPVNADSYDGHFCARLV 464 >gi|158424806|ref|YP_001526098.1| tRNA/rRNA cytosine-C5-methylase [Azorhizobium caulinodans ORS 571] gi|158331695|dbj|BAF89180.1| tRNA/rRNA cytosine-C5-methylase [Azorhizobium caulinodans ORS 571] Length = 447 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 104/463 (22%), Positives = 153/463 (33%), Gaps = 57/463 (12%) Query: 6 NARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 ARL + L+ V ++ + A R + D+ + LR R+ Sbjct: 15 AARLQAILDLMQEVDSVDRPADAVISAWFR--ARRDVGAEDRGPISETYYALLRAHARLG 72 Query: 65 AVLDFVLISSLPRKKYSLQQLL-----RVSVAQIL--YLDVADYAVVDLAVEQAKRDKEN 117 L PR + +L R VA++ + + K Sbjct: 73 WWLARHGREDTPRNRLLAFLVLDGKKTRDEVARLFSGGMSAPAPLTDNERALLVKLQGG- 131 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 P W E N +G A ++P Sbjct: 132 ----------------RMDSPSMPEEVRLECPAWALEPFRNRFG-AEFEREMAALLTPAP 174 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF------AEGVWWVQDA 228 +DL V E L + LP + P G +QD Sbjct: 175 LDLRVNPIKAKREDMVQALRELGLPAEPSVSAPFGIRVRERPSLSRLTMLKSGEVEIQDE 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + L V+D CA GGK A + + V A DV + RL++ R Sbjct: 235 GSQLVALLMDARPGERVVDFCAGAGGKTLAIAAQMANRGHVIACDVMEGRLKRGAERFRR 294 Query: 286 LHLYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L+ + E D + K FD VLVDAPCS TGT RR+PD W + Sbjct: 295 AGLHNIETRLLASETDRWVKRHKGTFDRVLVDAPCSGTGTWRRNPDARWRTLGAGLETLL 354 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L VKPGG +V++ CS+ ++E V L + P ++PL + Sbjct: 355 PQQARILASAARLVKPGGRLVYATCSMLPDENEGQVASFLAAHP-DFRVLPLTEVAPQLP 413 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 A PD L + MDGFFA L+R P Sbjct: 414 PSA-----------HPDYL-SLTPARHDMDGFFAAVLQRAPLP 444 >gi|227488841|ref|ZP_03919157.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium glucuronolyticum ATCC 51867] gi|227091263|gb|EEI26575.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium glucuronolyticum ATCC 51867] Length = 470 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 104/495 (21%), Positives = 178/495 (35%), Gaps = 94/495 (18%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 + L E + LS RD I T+R + +D ++ + Sbjct: 1 MFNDGAYGNIALPREITE---AGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSRPMSE 57 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + LR+ + Q+LY V D+A VD +V + VN+ILR V ++ +E Sbjct: 58 LDPIVLNALRMGIYQLLYTRVEDHAAVDTSVRLV-----PQRVKGFVNAILRAVQKKPLE 112 Query: 138 LLQ----------RIAGISIIPEWFKERL------------------------------- 156 ++A + PEW Sbjct: 113 QWIEELAPEGKLAQLAFRTGHPEWIARSYLATLSAPSGAVPSANGVGTESSADGARADSS 172 Query: 157 -----------------ENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV 196 + + + +A + + L K + A Sbjct: 173 AARSDPSTDPSAEPSTGSSTILFDELAKALEADSTRPIVHLAAKPGEISADELALITGGE 232 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP----VQLFGTLNNLSVLDLCAAP 252 + + + E + ++QD + + V++ + LDLCA P Sbjct: 233 EGAYSPYAVYLEGGNPADIEPVQEKLAFIQDEGSQLIGAALVRVDVDNDAGRWLDLCAGP 292 Query: 253 GGKTAQLI----VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 GGK + + GA VTA++++ R + +R + L ++ D FD Sbjct: 293 GGKATMIGSLAAIDGATVTAVEIAPHRGDLIRKATE--GLP-VTVVVGDGRTVDVGSSFD 349 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS G++RR + WT+D DI + Q +LL G+S KPGG+VV+S CS Sbjct: 350 RVLVDAPCSGLGSLRRRQESRWTKDESDIEELTALQYELLEAGVSRCKPGGVVVYSTCSP 409 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 D +++ E+V K L + P VE + + ++ E +++ Sbjct: 410 DLRETREIVDKALVTLP--VEELDAHPLVAPMDNVGR----EKSVQMW--------TYRH 455 Query: 429 GMDGFFAVALRRLIQ 443 G D F LR+ + Sbjct: 456 GTDSMFFAVLRKKAE 470 >gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3] gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3] Length = 450 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 87/454 (19%), Positives = 179/454 (39%), Gaps = 37/454 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + L+ + + +S L+ + + + + A V ++ +ID +L+ Sbjct: 11 EIIADALTLIEERELSSKHALERVFRRVEGKDKETA-RGIAHAYVFEIEKWRAKIDFILN 69 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD-------YAVVDLAVEQAKRDKENRHF 120 VL S + L LLR+ ++ + V VV + + N Sbjct: 70 SVLKGSRVEDLDTYLANLLRIGTFEMKFKGVNPAIATDSVVRVVKEKFDLTRAKFANAVL 129 Query: 121 AKLVNSILRR--VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 ++ + R ++ + ++ ++ P W+ E + G + + + + + P Sbjct: 130 REVEKFNVERALKRLKERDRIEWLSVRFSHPRWYVEYVVKLLGYDETVRLLLSNLRPQRY 189 Query: 179 DLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + V D++ L + + + + + L + +G + +QD + Sbjct: 190 YIRVNTLKVDVDRVKRYLEENGVRVSLTPVDDVLKVLEYEKPVTKLEWYRKGYFVIQDLA 249 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + VLDL AAPG KT + + ++ A+D S RL K+R + +L Sbjct: 250 SAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYDRLIKMRERMKKL 309 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ D Y K+ FD +++DAPCSS+GT R+ P+V W + + I + QR Sbjct: 310 GVKNVKLVHADGQSYTEKEKFDKIILDAPCSSSGTYRQFPEVKWRFNEEKIKRVISVQRN 369 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L+ + GG + +S CS+ ++E+ V + +ELV + D Sbjct: 370 MLINAYRNLAGGGEMTYSTCSIRIDENEQNVLFAIEK---GLELVDYPFEWG---DKGFL 423 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + R + FF LR+ Sbjct: 424 EIGDKVFRTWTHKHDCNS--------FFIAKLRK 449 >gi|325981403|ref|YP_004293805.1| Fmu (Sun) domain-containing protein [Nitrosomonas sp. AL212] gi|325530922|gb|ADZ25643.1| Fmu (Sun) domain protein [Nitrosomonas sp. AL212] Length = 423 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 94/454 (20%), Positives = 169/454 (37%), Gaps = 58/454 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L ++ +L + D+ L +D+ + V LR +++++ Sbjct: 10 AAIVALRTILPLEYPADAILRRFFQDNPM--LGAKDRAFIAETVFDILRHRFFLESLVKI 67 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 V + L+ + ++ +++ + A + E + +++ Sbjct: 68 VTP----------RALILAYLVKLQGMNLRELASLVSEAE-------TKWLSEI------ 104 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 + + +A + P W E+L++F +L + + +DL V Sbjct: 105 ---KAIKPDIFPLATQAEFPAWLVEKLQHFMSDTDILDLGLSLQKSARLDLRVNTLLAKR 161 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240 L + + P F G VQD + + L Sbjct: 162 NEVLEALKQEGIDAEATPYSPCGIRLAGKPAINRHILFLSGKIEVQDEGSQLLGYLLAPK 221 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--- 294 V+D CA GGK L+ S ++ A DVS++RL L+ R L I Sbjct: 222 RGEMVVDFCAGAGGKSLLLGALMNSKGRIYAFDVSEKRLNNLKPRFKRSGLSNLHIQRIT 281 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + I + Q +L S Sbjct: 282 NENDIKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPHSIDELKTKQAAILAAAAS 341 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +KPGG +V++ CS ++++ V+ + L + P L + I + ++ Sbjct: 342 LLKPGGQLVYATCSFLPEENQTVINEFLAAHPQFNLLNCAGLLSQQKIPLDTGE----FL 397 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR--LIQPK 445 ++ P DGFFA AL R L +P+ Sbjct: 398 QLFP--------KLHQTDGFFAAALTRNDLAKPE 423 >gi|94987318|ref|YP_595251.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis PHE/MN1-00] gi|94731567|emb|CAJ54930.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis PHE/MN1-00] Length = 447 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 95/469 (20%), Positives = 174/469 (37%), Gaps = 63/469 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR +++ L + ++ + LL+ LS++D LV +V LR Sbjct: 13 KKTKTAREIATIALQKI-KEGQPIQVLLNNILLTYP---LSKQDIALVTELVYGYLRLEI 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 RI +L+ L S Y ++ ++ ++ ++L+LD + YA + AV K + Sbjct: 69 RIVWILEQFLKKS-EHLPYEVKLIIGLATYELLFLDKIPPYATIHTAVSTIKSKFG-KIL 126 Query: 121 AKLVNSILRRVSREKIELL----------------QRIAGISIIPEWFKERLENFYGKER 164 A + N+ L+ + R+ ++ IP W + + YG ++ Sbjct: 127 AGVANASLQTIFRKSKHNDGPKYNTFYKQRLPEDIHYLSIWYSIPLWIIKLWISNYGTQK 186 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFA 219 L ++ + + Y + V + W + G + L + Sbjct: 187 TLKLAASSLQRPYFCIRVNPIYDNWRELYENLCQNGGIPIGRSGIYFKPNRKPKELQYYL 246 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSV--LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRL 276 E + + S V + + D CA GGKT+ L+ G + A D+S +L Sbjct: 247 EQGYISIQGAGSQIVMDALDIQTWKIPIWDACAGRGGKTSLLLEWGIPIFAASDISLSKL 306 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 + L RL L I + K +L+D PCS GT+ RHPD+ R Sbjct: 307 QGLIAETKRLKLLTPSIFCSSSTQPALKNVLCSQLKTILLDVPCSGLGTLSRHPDIKKFR 366 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D+ K Q+K+L F+ P G +++ C+++ ++E+ V + L+ P Sbjct: 367 TPKDVDKLIQLQKKILNTAWEFLPPQGELIYITCTVNPSENEQQVIQFLKDYPQA----- 421 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 W+ I G D F +++ Sbjct: 422 SLKKQWEGI-----------------------PDRFGTDIMFGAIIQKK 447 >gi|241765345|ref|ZP_04763321.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN] gi|241364944|gb|EER59882.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN] Length = 424 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 88/454 (19%), Positives = 151/454 (33%), Gaps = 59/454 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ + ++ + D L R++ + V LR D + Sbjct: 9 ACAELVRLTLTFEHPADAVVSRFFRDHR--GLGPRERATLAETVYTVLRKKLLFDHMA-- 64 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++L + + ++ A D+E + + + Sbjct: 65 -----PSGSGPKERRLAILG-----------FHGPRDFLKSALTDQEKKWLDQCDAVTVD 108 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 + +PEW + L++ G + + ++ +DL V Sbjct: 109 DLMERH---------RHNLPEWLVKPLKDQLG-DGFWPLVESLAQSAPLDLRVNALKDKR 158 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240 +L + I L F G VQD + + L Sbjct: 159 ADVQKELAKAGIKAHPTPYSPWGLRIDDKPALTKLDAFTRGAIEVQDEGSQLLALLLDAK 218 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGK + + ++ A DVS RL+ L+ L R L Sbjct: 219 RGEMVVDFCAGAGGKTLAIGATMRNTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIA 278 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + + + Q +L Sbjct: 279 HERDERIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAKAVEELVVKQAAILASAAR 338 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-- 411 +KPGG +V++ CS+ Q++E + + P L +D A L G Sbjct: 339 LLKPGGRLVYATCSILPQENEAIAEAFSADHPDFDVLDAGQVLEQLKVDAAHTLCSGGAS 398 Query: 412 ---WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++R+ P + DGFFA + Sbjct: 399 NTRYLRLWPHL--------HQTDGFFAAVWTKKA 424 >gi|305664185|ref|YP_003860473.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM 17230] gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM 17230] Length = 455 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 94/432 (21%), Positives = 182/432 (42%), Gaps = 57/432 (13%) Query: 45 DQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAV 103 D+IL AI + + ID ++ + S++ L+ LRV++ +L+ Sbjct: 46 DRIL-TAIYYDIWKRIGIIDRIICELTGVSNVAVLDPWLRAALRVAIEILLFER-----F 99 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG------------------- 144 + + + ++ ++ + L RV+ + + Sbjct: 100 LKESRYRDAKNIFIKYLKGRIAGFLSRVTHPYVGMYFWEMVDKISTYRLEIKDLYGDLEV 159 Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN---------A 195 ++ + +++ G + +I S I + V + LN Sbjct: 160 RYMVSRFIIDKIIKLVGIDEAKSILREFNSRYPISIRVNILKCSVDEVLNVLRSEGINAE 219 Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + + + P + EG +QD ++++ L V+DLCAAPGGK Sbjct: 220 IGKYVKTVIKFKGPYDFDRSSLYREGKIVIQDEASALASILLDPKPGEVVIDLCAAPGGK 279 Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDA 309 T + + + + A D+ K R+++++ L+R + I DA + + D Sbjct: 280 TEHMGELMNNTGIIYAFDIDKTRIKRMQEILNRCGISIVKIFNEDARKATEILGRNIADK 339 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VLVDAPC+S+GTI ++ ++ W D++ K+A Q +LL I VKPGG ++++ CSL Sbjct: 340 VLVDAPCTSSGTIMKNQELRWRITEDEVNKAAKLQYELLETAIELVKPGGKILYTTCSLF 399 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++++E+V++KVLR+ V++VP+N G +R P Sbjct: 400 REENEDVIEKVLRNHSN-VKIVPINGPLDPGFIA-------GTMRAWPH--------RHK 443 Query: 430 MDGFFAVALRRL 441 + GFF L+++ Sbjct: 444 LIGFFYALLQKI 455 >gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3] gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3] Length = 450 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 38/413 (9%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I ++ ID V+ ++ + L+ LRV+V L+ D + Sbjct: 53 LTMIFYDIMKKQGLIDKVIKEIVGVTPLILDPWLRAALRVAVDIALFHD-PSSQTIKNLR 111 Query: 109 EQAKRDKENRHFAKLVNSI------LRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162 +A +R + + L+ + + P W ER++ G Sbjct: 112 WKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIERVKGILGD 171 Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG----- 217 E +I + V + + + E +I+ + G Sbjct: 172 ETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFD 231 Query: 218 ----FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 F EG VQ+ ++++ + +V+DL AAPGGKT L + + K+ A D Sbjct: 232 TSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD 291 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPD 327 V K R+++L+ + R+ + + DA +++ D VL+DAPC+S+GTI ++P+ Sbjct: 292 VDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPE 351 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W D I + + QR+LL VKPGG ++++ CS+ K+++E+ ++ L P Sbjct: 352 LRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHP-E 410 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +LVPL S Y EG +R P GFF L + Sbjct: 411 FKLVPLKSPYDPGF-------LEGTMRAWPH--------RHSTIGFFYALLEK 448 >gi|118594064|ref|ZP_01551411.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Methylophilales bacterium HTCC2181] gi|118439842|gb|EAV46469.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Methylophilales bacterium HTCC2181] Length = 421 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 166/456 (36%), Gaps = 63/456 (13%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL- 67 + +L + K + L + ++ L D+ + I +R ++ ++ Sbjct: 7 KACADILGESLIKNLPADVQLSYYFKNNR--NLGSSDRSDIAEIYYGVIRNKRLLEEIVG 64 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 D + ++YL V + Sbjct: 65 DAHCKKMI-----------------LVYLLVLKGHSIKELS----------GVTDEYEIE 97 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 ++ + +P+W +L +YG+E +A + +SP + L V Sbjct: 98 WLVEKKKNKVHIDSWPTKLSLPDWIWAKLVLYYGEEEAIAFGTSLLSPATLQLRVNSLKT 157 Query: 188 TWAHKLNAVMLPTGGIRLKELPE--------------SIVSLPGFAEGVWWVQDASASIP 233 + + + ++ + +I P F G VQ+ + + Sbjct: 158 LSVQDVVNEFRLSFPDEVVKIKKTELSKQGITLPRGTAIQKHPLFLGGAIEVQEEGSQLL 217 Query: 234 VQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L V D CA GGKT + L+ + ++ A D+S RRL ++ L R Sbjct: 218 TLLLDVKRGHMVADFCAGAGGKTLALSALMKNTGRIYAFDISDRRLANMKQRLKRSGASN 277 Query: 291 EDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + E D + D VLVDAPC+ GT+RR+PD+ W + + + + A Q Sbjct: 278 IAMQRISNENDLKIKRLRNKLDRVLVDAPCTGFGTLRRNPDLKWRQTEESLAELAIKQAS 337 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L K GG +V++ CS+ ++E ++ L ++ +++P + KS + Sbjct: 338 ILEAASKLCKKGGYLVYATCSILNDENENIIATFLENN-QHFKIIPQHIIMAKS---GVD 393 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++++ P + DGFF + R++ Sbjct: 394 IGEGDFLKLNPH--------THKTDGFFGALMERIV 421 >gi|319408157|emb|CBI81810.1| SUN-family protein [Bartonella schoenbuchensis R1] Length = 428 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 95/452 (21%), Positives = 162/452 (35%), Gaps = 51/452 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + L F +S D+ + IV LR + +D Sbjct: 8 QAAIDVLKEIEMRHRPASEALKDWGLSHRFAGVS--DRAAIGTIVYDVLRRRYSLQWRMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + LL + +EQ E F + ++ Sbjct: 66 SD-----DILDIAFGALLDTGA---------------MTIEQIDSTLEGDRFTPQLLALK 105 Query: 129 RRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 +R S +K +L+ I IP+W + L+ + V A + +DL V Sbjct: 106 QRHSWQKRQLVDAPDYIRGDIPQWCQAHLQPLFADNWVTEA-AALATRPPLDLRVNSLKA 164 Query: 188 TWAHKLNAVMLPTGGIRLKEL-------------PESIVSLPGFAEGVWWVQDASASIPV 234 T L + ++ + P F +G + VQD + I Sbjct: 165 TPEKVLKELAKIKVQSFSWFRQALRIAPIEKFGRHPNVQAEPAFQKGHFEVQDLGSQIVA 224 Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L T + +LD CA GGKT A + + ++ A D +K RL + L R ++ Sbjct: 225 HLTETKAGIQLLDYCAGAGGKTLALAANMNNRGQIYAYDSNKVRLAPIFSRLRRAGIHNV 284 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D VL+DAPCS TGT RR PD W + + + Q +L + Sbjct: 285 QSRVHVEELKPLVGQMDIVLLDAPCSGTGTWRRRPDAKWRLTPEQVKQRQEEQFAILNEA 344 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSP 409 + ++K G +V+ CSL ++EE + + L+ +L L ++ S + S Sbjct: 345 LVYLKSNGRLVYITCSLFIDENEEQISRFLQRHSNFFPIDLRALWQRHFSSSTIQPMFSS 404 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + S+ DGFF L++ Sbjct: 405 YG---------LTLSPASTQTDGFFLAILQKK 427 >gi|260888974|ref|ZP_05900237.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia hofstadii F0254] gi|260861034|gb|EEX75534.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia hofstadii F0254] Length = 433 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 96/456 (21%), Positives = 192/456 (42%), Gaps = 38/456 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N +L +LL + + L+ + + + ++++++ + ++NV ++ L Sbjct: 1 MIKKKNIKLDIVNLLDEI-QNGKYSNIQLNYYFSKNNY---TKKEKMFITNVINVVIKNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ID ++ + + RK ++QLLR+SVAQ+ +++ + V+ A E AK N H Sbjct: 57 IYIDYLIGKSVRNVKKRK---IKQLLRISVAQLFFMESDNAGVIFEAGEIAK--ILNAHQ 111 Query: 121 AKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 A VN+ L+ E+I R + + P+WF +++ Y + + + + Sbjct: 112 AGFVNATLQTILKNKEKFDEEIPKDNRESIVLSYPQWFVNKMKIDYPDDYLEML-KSYKK 170 Query: 175 PLYIDLTVKFDI------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 Y+ + + E + +L + G +I + G +QDA Sbjct: 171 RSYLSVRFDKNKITSEKFEELLKNIKTDILFSVGEVYYLSNANIFDTQIYKNGDVVIQDA 230 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 S+ + V+ G + +VLD C+APGGK + + + + D+ + +++ L ++ Sbjct: 231 SSYLAVRNLGVKDGETVLDACSAPGGKSLAILQLFNPKNLISTDIHEHKVKLLNELKNKY 290 Query: 287 HLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ D +FD +L+D PCS G +R+ P+ ++ +DI Q+ Sbjct: 291 GYSNFEVKLNDATQIENLDTMFDKILLDMPCSGLGVLRKKPEKIYELTANDIKNLKKLQK 350 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+ +K GG +V+S C+ K ++ +Q L L D+ Sbjct: 351 KIFESAYKSLKNGGEIVYSTCTFSKNENTNNIQYFLEKYKDLEILE-----VEIPKDIEN 405 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + I + MDGF+ LR+ Sbjct: 406 IRDEFGGVYI--------SYKNKYMDGFYIAKLRKK 433 >gi|254247429|ref|ZP_04940750.1| hypothetical protein BCPG_02227 [Burkholderia cenocepacia PC184] gi|124872205|gb|EAY63921.1| hypothetical protein BCPG_02227 [Burkholderia cenocepacia PC184] Length = 421 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 94/445 (21%), Positives = 154/445 (34%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F S Sbjct: 72 PARRLT-------LLGLMQ------------------TMGRNALKPFLSDTESAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W + L + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSERFDAEELAQLAAALNYPAPLDLRANAQKASRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + G + L F EG VQD + + L Sbjct: 167 EALRVSGIEAGATPFAPFGVRVVGKPALTRLKLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A D+S++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDISEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-EFTLVPAQQVL---ADQRIELETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|296116324|ref|ZP_06834940.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769] gi|295977143|gb|EFG83905.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769] Length = 431 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 89/461 (19%), Positives = 165/461 (35%), Gaps = 49/461 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M ARL + L+S + + + + + + + D+ + A V TLR Sbjct: 1 MTPS--ARLSAAIDLISAMEATPFRPADAVANSFFRERRY--IGGGDRRAISARVWDTLR 56 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD--VADYAVVDLAVEQAKRDKE 116 R+ ++ PR L +++ + D + ++ D + Sbjct: 57 HWRRLCWWIERADAPVTPRT-------LVLALEVLARQDRMTPEELFSGERYAPSRLDPQ 109 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 R + + A +P+W R + A A + Sbjct: 110 ERALCAFLRG------KSMDHPEMPRAVTLEVPDWLLPR-VEATFGAQADAELQAMMGEA 162 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227 +DL E L + T L + + S F G+ +QD Sbjct: 163 TLDLRANLLKTTREAARMALAQEGITTQDTTLSPWGLRVAGRQPVTSTAAFRAGLIEIQD 222 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + G + VLD CA GK A + + + A DVS+ RL+ L Sbjct: 223 EGSQLVAAAVGAEPGMRVLDYCAGAAGKTLAMAMTMNNRGHIVACDVSEPRLDGAVRRLR 282 Query: 285 RLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ + D + FD VLVDAPC+ TGT RR+PD D+++ Sbjct: 283 RAGVHNAERHLLATGDKWARRRAGSFDRVLVDAPCTGTGTWRRNPDARLRLRESDLLELM 342 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +L + + ++PGG +V++ CS+ +++ + + ++ +P + P Sbjct: 343 EKQSDILDRAAALLRPGGRLVYATCSILNEENHDQIAAFVQRNPAFRLVTP--------- 393 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P G + + + +G DGFF + R+ Sbjct: 394 PQGEGIMPAG---LLVGGQMSLSPLRNGTDGFFTAVMERVA 431 >gi|254673053|emb|CBA07675.1| conserved hypothetical protein [Neisseria meningitidis alpha275] Length = 418 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 83/446 (18%), Positives = 162/446 (36%), Gaps = 53/446 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L+ ++ + +L + + L ++D+ + LR + + L Sbjct: 10 AKVLAEMLTFKQPSDAVLSAYFREHK--KLGRQDRHEIAETAFAALRHYQK----ISTAL 63 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + + L + + + + L + Sbjct: 64 RRPHAQPRKAALAALVLG----------RSTNISQIKDL---------LDEEEIEFLGNL 104 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 K E + + +P+W E+L+ + +E +LA + +D+ V + Sbjct: 105 KARKTEFSDGLNTAAELPQWLVEQLQQHWREEEILAFGRSINQAAPLDIRVNTLKGKRDK 164 Query: 189 WAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L A + ++ F +G VQD + + L G Sbjct: 165 VLPLLQAESADAEATPYSPWGIRLKNKIALNKHELFLDGTLEVQDEGSQLLALLVGAKRG 224 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----E 295 ++D CA GGK + + ++ A D++++RL L+ + R L E Sbjct: 225 EIIVDFCAGAGGKTLAVGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERISSE 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D+ D VLVDAPCS GT+RR+PD+ + + + + Q +L V Sbjct: 285 HDSRIARLAGKADRVLVDAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KP G ++++ CS+ +++E V++ L ELV + + L ++R+ Sbjct: 345 KPQGRLMYATCSVLPEENELQVERFLSEH-SEFELVNCAELL---QSLKVDLDTGKYLRL 400 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 D DGFFA L+R Sbjct: 401 --------DSARHQTDGFFAAVLQRK 418 >gi|119899412|ref|YP_934625.1| hypothetical protein azo3122 [Azoarcus sp. BH72] gi|119671825|emb|CAL95739.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 430 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 103/458 (22%), Positives = 171/458 (37%), Gaps = 58/458 (12%) Query: 2 KSGMNARLV---SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 +R + ++ L V+ +L + D+ L RD+ + + +R Sbjct: 7 APDAPSRALLIQATQALGAVLAFDHPADAVLSRYFRDNR--DLGHRDRGFIAENIYGIVR 64 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 L + ++ S +QLL L + Sbjct: 65 RLRWLRRLVGE---------NASPRQLLL--AWLARGEGWPMRQFEGLVSPTERDWVAGI 113 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 A L L A + +P+W ERL + + +LA++ + P + Sbjct: 114 KAATLEEGSL--------------AERADLPDWLAERLLRTHDEAALLALAHSLNRPAPL 159 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 DL V D + L R ++ P F +G VQD Sbjct: 160 DLRVNVAKADRDRVVAALREAGFGCEPGRWSPQAVRLAGKPALQKHPLFLDGSVEVQDEG 219 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + L V+D CA GGKT Q ++ S ++ A DVS++RL KL+ + R Sbjct: 220 SQLLGLLVQPKRGELVVDFCAGAGGKTLQLGAMMRSTGRLYAFDVSEKRLAKLKPRMARA 279 Query: 287 HLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L E DA D VLVDAPCS GT+RR+PD+ W + + + Sbjct: 280 GLSNVHPVLIAHENDAKVKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSAAAVDEMVA 339 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L VKPGG +V++ CSL ++++E+V + + P ++ +D Sbjct: 340 KQGAILAAAARLVKPGGRLVYATCSLLAEENDEIVDAFVAAHP-----------EFRPVD 388 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ +G + + ++ DGFFA L R Sbjct: 389 AEAVLARQG-VALATGARLRLSPAEHDTDGFFAAVLER 425 >gi|281355510|ref|ZP_06242004.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548] gi|281318390|gb|EFB02410.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548] Length = 450 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 157/447 (35%), Gaps = 37/447 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL- 67 L + +L V +L ++ RD+ + V LR+ + L Sbjct: 17 LAARTVLQAVFGSGKPADRVLSAWLRENRQCG--SRDRQFIGEAVYAMLRYWGLLRKFLP 74 Query: 68 -DFV--LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + + R L + + Y ++ + A E + A+ Sbjct: 75 AERLVEIERGEIRLARLELDALLFAALYLDYRNLPAADAI--ARELGFPWPKPDREARNQ 132 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + + A ++P+W L G +R ++D P Sbjct: 133 LLARAGALGKIFGVDAVFADGDLLPQWIATHLPE--GLDRERFLADLAARPPMWLRMQTA 190 Query: 185 DIETWAHKLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + + L+A L ++ +L F G++ VQD ++ Sbjct: 191 ETDHLVADLSAAGLSVSRHGKIADAVAVTGRVNLFTLDAFRNGLFEVQDLASQCIGLAAA 250 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + LD CA GGKT QL + V A D+ +L+ LR R E Sbjct: 251 PKSGERWLDACAGAGGKTLQLAALMNRTGTVVATDIRSYKLDDLRTRARRAGFPNIRTRE 310 Query: 296 MDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D Y K+ FD VLVDAPCS +G RR+PD WT +++ Q ++L Sbjct: 311 WDGKPYQGKQAARFDGVLVDAPCSCSGVWRRNPDGRWTLKAEELTDITRVQFEVLTAAAP 370 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG+++++ CSL +++ V+++ L + P N + G + Sbjct: 371 AVKPGGVLIYATCSLFPEENGGVLERFLAAHPEYTLEDFPNPLTGEPTG--------GTL 422 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ D F +RR Sbjct: 423 QVF--------SYDGDCDSMFVARMRR 441 >gi|332678642|gb|AEE87771.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf. novicida Fx1] Length = 426 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 193/448 (43%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYQFFRHYFSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + QI + YA ++ V A +D + KLV Sbjct: 57 KIIALYLTQQTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREITRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK+ + + F +G + +QD SA + Sbjct: 173 QTKDTKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQVIKNLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|107023447|ref|YP_621774.1| Fmu (Sun) [Burkholderia cenocepacia AU 1054] gi|116690529|ref|YP_836152.1| Fmu (Sun) domain-containing protein [Burkholderia cenocepacia HI2424] gi|170733870|ref|YP_001765817.1| Fmu (Sun) domain-containing protein [Burkholderia cenocepacia MC0-3] gi|105893636|gb|ABF76801.1| Fmu (Sun) [Burkholderia cenocepacia AU 1054] gi|116648618|gb|ABK09259.1| Fmu (Sun) domain protein [Burkholderia cenocepacia HI2424] gi|169817112|gb|ACA91695.1| Fmu (Sun) domain protein [Burkholderia cenocepacia MC0-3] Length = 421 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 94/445 (21%), Positives = 154/445 (34%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL+ V++ + L ++ ++ V LR + + + Sbjct: 14 LLAEVLKFAGPADATTSRFFRAHP--KLGHAERGVIAEAVFAVLRRKMEFSHLAESGTGT 71 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 R + + Q + F S Sbjct: 72 PARRLT-------LLGLMQ------------------TMGRNALKPFLSDTESAWLEHVS 106 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + + + +P+W + L + E + ++ A P +DL + Sbjct: 107 KIDPASLPVRIRTNLPDWIHQALSERFDAEELAQLAAALNYPAPLDLRANAQKATRDQVI 166 Query: 191 HKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L + G + L F EG VQD + + L Sbjct: 167 EALRVSGIEAGATPFAPFGVRVVGKPALTRLKLFEEGAIEVQDEGSQLLCSLVAPRRGEM 226 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMD 297 V+D CA GGKT ++ S ++ A D+S++RL KL+ L R L + + E D Sbjct: 227 VVDFCAGAGGKTLALGAMMRSTGRLYAFDISEKRLAKLKPRLARSGLSNVNPVLIDSEHD 286 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A D VLVDAPCS GT+RR+PD+ W + I + Q +L VK Sbjct: 287 AKIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTRTAIDELTPKQASILASAARLVKK 346 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++E +V++ L P LVP D + L ++ + P Sbjct: 347 GGRLVYATCSVLDAENERIVEQFLADHP-EFTLVPAQQVL---ADQRIELETGDYLSLWP 402 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 DGFFA L R Sbjct: 403 H--------RHATDGFFAAVLERRA 419 >gi|319940730|ref|ZP_08015072.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis 3_1_45B] gi|319805881|gb|EFW02648.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis 3_1_45B] Length = 456 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 101/452 (22%), Positives = 191/452 (42%), Gaps = 41/452 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ + ++ + SL+ L+ LS + + +++IV +R +A Sbjct: 27 EFAADVRRRML-EGASLSSALETVSI-----GLSAQARAALQSIVYDVIRRRAFSNAA-- 78 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + LL +++A ++ +D+ +V+ V A+ ++ FA L+N++L Sbjct: 79 -AAGLLSSPPPPPVMGLLEIAIALVVEGRYSDFTLVNETVNAARNNRRTVRFAGLINAVL 137 Query: 129 RRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI------ 178 RR RE+ ++ + + P W+ R++ + + + Sbjct: 138 RRFLREREQISAVLQKDLDVRFNAPLWWIRRIKESHPSNWEEILRIGTLHAPMTLRVNAR 197 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 +T +E + + + E P + +PGF EG+ VQDA + ++ Sbjct: 198 RITPAAYLEELKARGIPALRVGRSAVMLESPLPVKDIPGFTEGIVSVQDAGTQLAAEILA 257 Query: 239 TLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--IIE 295 N +LD CAAPGGKTA L + VTAL++ +R E ++ L RL + A Sbjct: 258 PKKNEQILDACAAPGGKTAHLLESADCHVTALEIDPKRAELIKSTLLRLGVEATVRAADA 317 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ + FDA+L+DAPC+++G +RR PDV W+R +D + A Q +LL V Sbjct: 318 AMVSEWHSGREFDAILLDAPCTASGIVRRQPDVPWSRRPEDPARLAREQARLLNALWPLV 377 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +++ CS+ ++ + +++ + A +P G + + Sbjct: 378 KKGGRLLYCTCSIFPEEGPDQIRRFTANHGDAQL-------------TAFKGAPTGMMSL 424 Query: 416 TPDMLEKIDGVSSG------MDGFFAVALRRL 441 P + DGFF L +L Sbjct: 425 VPADHVHELPFNPNAAEPLVHDGFFYALLTKL 456 >gi|57641870|ref|YP_184348.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1] gi|57160194|dbj|BAD86124.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus kodakarensis KOD1] Length = 450 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 92/409 (22%), Positives = 171/409 (41%), Gaps = 34/409 (8%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I R L ID V++ ++ S L+ LRV+V ++ + Sbjct: 48 LTGIFYSIQRRLGLIDEVIEELVGVSPLILDPWLRAALRVAV-EVGVFREPSERTLQHLK 106 Query: 109 EQA-----KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 A + ++ + + + +R+ + PEWF R+ G+E Sbjct: 107 GVAQFLSKRTHPYVGYYYYDLLPRVVNYVPKLDTEEKRLKWEYLFPEWFIARMRALLGEE 166 Query: 164 RVLAISDACISPLY-IDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVS--LPG-- 217 + + I + ++ +E + L + I+ P Sbjct: 167 AEELLRALNETLPTSIRVNRLRTSVEEVENYLRKKGVRFERSERVNTVIRILDPFNPEWL 226 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274 F +G Q+ ++++ + +V+DL AAPGGKTA + + + K+ A DV Sbjct: 227 FNKGYAIAQEEASAVASLVLAPKPGETVVDLAAAPGGKTAHMAELMENRGKIYAFDVDSA 286 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R+++++ L R + ++I+ D + +++ D VL+DAPC+S GTI ++P++ W Sbjct: 287 RIKRMKEVLKRTGVEIAEVIKADGRNAPELLGEEIADRVLLDAPCTSDGTIAKNPELRWR 346 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 +I K Q++L+ +KPGG +++S CS+ +++EEVV+ L P ELV Sbjct: 347 LREKNIPKVVALQKELMESAWKLLKPGGRLLYSTCSMLPEENEEVVKWFLERHPG-AELV 405 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 PLN Y +G +R P GFF + + Sbjct: 406 PLNGPYDPGF-------LKGTMRAWPH--------RHRTIGFFYALIEK 439 >gi|33592823|ref|NP_880467.1| hypothetical protein BP1756 [Bordetella pertussis Tohama I] gi|33572471|emb|CAE42042.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382236|gb|AEE67083.1| hypothetical protein BPTD_1733 [Bordetella pertussis CS] Length = 433 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 98/450 (21%), Positives = 165/450 (36%), Gaps = 61/450 (13%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V++ +L A+ + RD+ + V LR L R S Sbjct: 1 MLGEVLQWTYPADAVLSHWLR--AYPGMGGRDRAELAQAVYDVLRHLRRY----RQFAES 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + + ++L + +A + DV + + + R Sbjct: 55 GV---GPATRRLAILGLAATMNPDVLAEGL------------------GADQAAWLQRIR 93 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189 A + +P+W ERL E + DA P +D+ V Sbjct: 94 HIDVATLPRAVRASVPDWLDERLAQLDDSEA---LLDALNRPANLDIRVNPLKAERDPML 150 Query: 190 -------AHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 A + + +P ++ + P F +G VQD + + L G Sbjct: 151 TVLRAGPAGRFDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRR 210 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 ++D CA GGKT L+ S ++ A DVS RL + + R L + Sbjct: 211 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 270 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D VLVDAPCS GT+RR+PD+ W + I + Q ++L Sbjct: 271 ENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARC 330 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V PGG +V++ CSL +++ E ++ L P L + ++ ++ +++ Sbjct: 331 VAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGP---YVQ 387 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + PD+ G DGFFA R +P Sbjct: 388 LRPDV--------HGTDGFFAAVFERR-KP 408 >gi|325291723|ref|YP_004277587.1| Sun protein [Agrobacterium sp. H13-3] gi|325059576|gb|ADY63267.1| Sun protein [Agrobacterium sp. H13-3] Length = 429 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 95/452 (21%), Positives = 158/452 (34%), Gaps = 45/452 (9%) Query: 8 RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL + +L+ + +R + L F D+ + IV LR + Sbjct: 6 RLAGAIEVLADIEGRRRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMKLSHAWL 63 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D +SL LLR E A ++ + Sbjct: 64 MDDDSAASLGYA-----VLLR--------------QWGKSFSELAAEFDGDKFAPAAPDE 104 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 ++ + IPEW + E +G E LA + A +DL Sbjct: 105 EKQKAFLSRSLADAPAHIQGDIPEWVQASFETAFG-EGWLAEAQALNQRPTLDLRANTLK 163 Query: 187 ET------WAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIP 233 T + A ++ ++ + F +G + VQD + I Sbjct: 164 ATRDKVLKALEESGAEATHIARQGVRIPAGEGPSRLPNVTAELSFQKGWFEVQDEGSQIV 223 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L G +LD CA GGKT + + + +V A D ++RL + L R Sbjct: 224 ADLAGAHEGEQILDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERLKRAGTRN 283 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + A + FD VLVDAPC+ TGT RR PD W T ++ + Q + L Q Sbjct: 284 VQVHDRAAGLVPFHEKFDRVLVDAPCTGTGTWRRRPDTKWRLTTRNLEERVQQQGEALSQ 343 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 FV+PGG +++ CS+ +++E+ V + +P L+ A Sbjct: 344 AKGFVRPGGELLYVTCSVLPEENEQQVTRFCEENPQFYIGSALDRWQTTFGGNANKPHSS 403 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++ DGFF ++R Sbjct: 404 D------GKTVTLTPATTDTDGFFFCVMKRKA 429 >gi|145590255|ref|YP_001156852.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048661|gb|ABP35288.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 438 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 106/459 (23%), Positives = 183/459 (39%), Gaps = 69/459 (15%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ +S VM SLT +LD L ++ +V+++ LR R ++ Sbjct: 18 IAAQAISEVM-SGRSLTEVLDE---------LDAHERPIVQSLTFDALRKWVRSHELIKQ 67 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVAD-----YAVVDLAVEQAKRDKENRHFAKLV 124 + + P + LL V++A + D D + VVD AV + + LV Sbjct: 68 FVPKTPP---PEVDHLLSVAIALFIRNDADDKGYAVHTVVDQAVRACGEYDQTLYAKGLV 124 Query: 125 NSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI- 178 N++LR+ +P W++ L+ Y K+ + I Sbjct: 125 NAVLRKVSLALQPVADKPFYPPDPIAMFVPPWWRASLKRNYSKDWQAILFAQAKRAPLIL 184 Query: 179 -DLTVKFDIETWAHKLNAVMLPTGGIR-----------LKELPESIVSLPGFAEGVWWVQ 226 ++ + + L + + I L + LPGF G VQ Sbjct: 185 RVNQKQYSRDEYRALLTESGIQSKPINAIAGISLPSALLLPDAVPVSDLPGFYSGAVSVQ 244 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDR 285 DA A + L + +LD CAAPGGKTA L+ + ++ AL++ +RL K+ NLDR Sbjct: 245 DAGAQLAATLLNPQADELILDACAAPGGKTAHLLELADCQMRALELDGKRLGKIGGNLDR 304 Query: 286 LHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L L++E + FD +L+DAPCS++G + RHPD+ + R DI Sbjct: 305 LRLHSEKAKVLRGDASKSAWWDGVPFDKILIDAPCSASGIVARHPDIPFLRRESDIPVLQ 364 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR++L Q +K GGI+++ CS+ ++ E+ + + L Sbjct: 365 QRQREILTQAWKMLKSGGILLYVTCSVFPEEGEDQAVWFAQEHSNALRLDAPG------- 417 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ ++ Sbjct: 418 ------------QLLP---------TDANDGFYYALFKK 435 >gi|221068794|ref|ZP_03544899.1| Fmu (Sun) domain protein [Comamonas testosteroni KF-1] gi|220713817|gb|EED69185.1| Fmu (Sun) domain protein [Comamonas testosteroni KF-1] Length = 443 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 95/465 (20%), Positives = 162/465 (34%), Gaps = 68/465 (14%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L+ + ++ + ++ + L R++ + V LR +A+ Sbjct: 12 ELVKRALTFEHPADAVVSRFFRENRY--LGPRERATLAETVYTVLRKKLLFEAL--AHSG 67 Query: 73 SSLPRKKYSLQ---QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 S ++ ++ +LR EQAK++ + ++ + Sbjct: 68 SGARERRLAILGFAAVLR---------------------EQAKKEGKVKNKDGQDSETFI 106 Query: 130 RVSREKIELLQ------------RIAGISIIPEWFKERLENFYGKE-RVLAISDACISPL 176 + + EL A +PEW E L+ G E LA S + L Sbjct: 107 KAALTPQELKWLAACDGVKPEELMEAHRHNLPEWLVEPLKAQLGDEFWTLAASMEQAAAL 166 Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + + D +L + ++ L F G VQD Sbjct: 167 DLRVNTLNDKRSDLRKELEKAGIKAEPTPFSPIGLRVDGKPALAKLDAFNRGAIEVQDEG 226 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + V+D CA GGKT + + + ++ A DVS RL+ L+ L R Sbjct: 227 SQLLALMLDAKRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARS 286 Query: 287 HLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L E D D VLVDAPCS GT+RR+PD+ W + + + Sbjct: 287 GLSNVHPAAIAHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSVKAVQELTQ 346 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L VK GG ++++ CS+ Q++E + + + P V L I Sbjct: 347 KQAAILESSARLVKAGGRLIYATCSILPQENEAIAEAFSAAHPEFVPLDAGEVLEQLKIA 406 Query: 403 MAMALSPEG-----WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L G ++R+ P DGFFA + Sbjct: 407 DGDKLCSGGDEGRRYLRLWPH--------QHETDGFFAAVWVKKA 443 >gi|260220648|emb|CBA28398.1| hypothetical protein Csp_A07070 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 423 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 154/454 (33%), Gaps = 59/454 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L+ ++ ++ + D+ L R++ + V LR D + Sbjct: 8 EACTELVRLTLKFDHPADAIVSRFFRDNR--GLGPRERATLAETVYTVLRKKLLFDHLA- 64 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++L + + A D+E R Sbjct: 65 ------PSGSGPKERRLAILGFY-----------GPGDFLRSALTDQEKRWL-------- 99 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 +PEW + L++ G + + + +DL V Sbjct: 100 -DQCEAVKPDDLMERHRHNLPEWLVQPLKDQLG-DGFWPLVENLNLGAGLDLRVNALKAK 157 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGT 239 +L + L I P F G + VQD + + L Sbjct: 158 RADVQKELQQAGIKAVPTPFSPLGLRIAGKPALNKNEAFLRGDFEVQDEGSQLLAMLVDA 217 Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292 V+D CA GGKT + S ++ A D S RL+ L+ + R L Sbjct: 218 KRGEMVVDFCAGAGGKTLALGAAMRSTGRLYAFDTSAHRLDALKPRMARSGLSNVHPAAI 277 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D D VLVDAPC+ GT+RR+PD+ W + + + A Q +L Sbjct: 278 AHERDDRVKRLSGKLDRVLVDAPCTGLGTLRRNPDLKWRQTMAGVEEMAVKQAAILQSAA 337 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411 VK GG +V++ CS+ Q++E + ++P V L + ++ A +L G Sbjct: 338 RMVKSGGRLVYATCSVLPQENEAIADAFSAANPEFVHLPAGDVLSNLKVENAPSLCSGGD 397 Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R+ P + DGFFA ++ Sbjct: 398 DGQLYLRLWPHL--------HQTDGFFAAVWQKK 423 >gi|91790269|ref|YP_551221.1| sun protein [Polaromonas sp. JS666] gi|91699494|gb|ABE46323.1| sun protein [Polaromonas sp. JS666] Length = 445 Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 126/455 (27%), Positives = 195/455 (42%), Gaps = 54/455 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ LL V R S+T L+ + + V+++ TLR+L R +A+ + Sbjct: 17 AASLLMAV-RDGQSMTAALE---------DVDAALRPGVQSLGFHTLRWLGRAEALRQQL 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVAD--YAVVDLAVEQAKRDKENRHFAKLVNSI 127 P LL V++A I D + +VD AVE AKR +H A +N Sbjct: 67 AKRPPP---PEADALLCVALALIWTEHDAPYTAHTLVDQAVEAAKRGDATQHQASFINGC 123 Query: 128 LRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + + P+W+ +R+ + + AI A S + L V Sbjct: 124 LRRFLRERDDLVARSEKSPQAVWNHPQWWIDRVRKDHPGQW-QAILQANNSRAPLILRVN 182 Query: 184 FDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 T A L A + + + SLPGFAEG + VQDA+A + L Sbjct: 183 ERKTTQAQYLLALSAVNIAATPVGKQGVILASAQPVPSLPGFAEGHFSVQDAAAQLAAPL 242 Query: 237 FG--------TLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLH 287 +LD CAAPGGKTA L+ + +VTALD+ RR ++ NL RL Sbjct: 243 LLEGLNTGDGQGARPRILDACAAPGGKTAHLLELADCEVTALDIDARRCTRIAQNLGRLG 302 Query: 288 LYAED--IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L A D+ + +D +L+DAPC+++G +RRHPDV W R DI + A Q Sbjct: 303 LQAHIEVADAGRPQDWWDGQPYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAGIQA 362 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 LL +KPGG +++ CS+ + + + +Q + + L+P Sbjct: 363 HLLQALWPLLKPGGRLLYCTCSVFRAEGDNQIQTFVAHHTDAL-LMPSPGHLLPQSGAEA 421 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ +R DGF+ L + Sbjct: 422 TVFPDNLMR--------------EHDGFYYAILEK 442 >gi|317154835|ref|YP_004122883.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2] gi|316945086|gb|ADU64137.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2] Length = 425 Score = 183 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 91/403 (22%), Positives = 144/403 (35%), Gaps = 26/403 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR ++ LS + + LD RD L I LR Sbjct: 7 KPLPPARRIALEALSHCLFSGHDIQATLDTALSAKPT---DPRDTGLATEIAYGYLRHKG 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 R++ VL L + ++ + V+ ++++LD V YA VD AVE +K R Sbjct: 64 RVEYVLSRFLQDP-GKLPPKMRLAMGVAAYEMIFLDKVPAYASVDWAVEFSKTKPGTR-L 121 Query: 121 AKLVNSILRRVSREKIELLQRIAGI------------SIIPEWFKERLENFYGKERVLAI 168 + L N++LRRV+ P+W + + YG+ LA Sbjct: 122 SGLFNAVLRRVAELGETAHDPDFYRKDASGPEFLTRWYSCPQWLADMWRHAYGEADTLAY 181 Query: 169 SDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 A ++P + +L + + L A+ + S Q Sbjct: 182 LKAQLNPPALGINLFGHPEADELYADLAALPEVLDIEGMSFALPPGTSFEDEPRPPLARQ 241 Query: 227 DASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 +A ++ D CA GGKT L A D+ + RL L Sbjct: 242 SFAARQVIERLSPAAWPEPVWDACAGRGGKTRILREKNIDTFASDIHRGRLAALSRE--- 298 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L E DA P + VL+D PCS G + R PD W R D+ Q Sbjct: 299 --LPEVTTFEADAATATPPRQPGTVLLDLPCSGLGVLSRRPDTKWKRTARDLDDLVRLQT 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 ++L +PGG + C+L+ +++ +V+ L + P Sbjct: 357 EILDNAAIQARPGGTLAVVTCTLNPDENQGLVRTFLAAHPGAA 399 >gi|299532567|ref|ZP_07045957.1| Fmu (Sun) [Comamonas testosteroni S44] gi|298719514|gb|EFI60481.1| Fmu (Sun) [Comamonas testosteroni S44] Length = 443 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 92/465 (19%), Positives = 161/465 (34%), Gaps = 68/465 (14%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L+ + ++ + ++ + L R++ + V LR +A+ Sbjct: 12 ELVKRALTFEHPADAVVSRFFRENRY--LGPRERATLAETVYTVLRKKLLFEAL--AHSG 67 Query: 73 SSLPRKKYSLQ---QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 S ++ ++ +LR EQAK++ + ++ + Sbjct: 68 SGARERRLAILGFAAVLR---------------------EQAKKEGKVKNKDGQDSETFI 106 Query: 130 RVSREKIELLQ------------RIAGISIIPEWFKERLENF-YGKERVLAISDACISPL 176 + + EL A +PEW E L+ LA S +PL Sbjct: 107 KAALTPQELKWLAACDGVKPEELMEAHRHNLPEWLVEPLKAQLGDGFWALAASMEQAAPL 166 Query: 177 YIDLTVKFD-IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 + + D +L + ++ + F G VQD Sbjct: 167 DLRVNTLNDKRSDLRKELEKAGIKAEPTPFSPIGLRVDGKPALAKIDAFNRGAIEVQDEG 226 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + V+D CA GGKT + + + ++ A DVS RL+ L+ L R Sbjct: 227 SQLLALMLDAKRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARS 286 Query: 287 HLYAED----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L E D D VLVDAPCS GT+RR+PD+ W + + + Sbjct: 287 GLSNVHPAAIAHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSVKAVQELTQ 346 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L VK GG ++++ CS+ +++E + + + P V L I Sbjct: 347 KQAAILESSARLVKAGGRLIYATCSILPEENEAIAEAFSAAHPEFVPLDAGEVLEQLKIA 406 Query: 403 MAMALSPEG-----WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L G ++R+ P DGFFA + Sbjct: 407 DGDKLCSGGDEGRRYLRLWPH--------QHETDGFFAAVWVKKA 443 >gi|240102589|ref|YP_002958898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239910143|gb|ACS33034.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 443 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 168/410 (40%), Gaps = 36/410 (8%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I R L ID V++ ++ S L+ LRV+V ++ + + Sbjct: 48 LTGIFYSIQRRLGLIDEVIEELVGVSPLILDPWLRATLRVAV-EVAVFRDPNERTLQHLK 106 Query: 109 EQAKRDKE-NRHFAKLVNSILR----RVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 AK + L + +R+ + PEWF ER+ G E Sbjct: 107 GLAKFLSGRTHPYVGYYYYELLPRVINYVPKLNSEEKRLKWKYLFPEWFIERMHKLLGGE 166 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-LPGF---- 218 + A L + L V + + + E E+++ L F Sbjct: 167 -AEELLKALNETLPVSLRVNCLKASVEDVEDYLKRRNLRFERSERVETVIRVLDPFNPGR 225 Query: 219 --AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 +G+ Q+ ++++ + +V+DL AAPGGKTA + + + K+ A DV Sbjct: 226 LMEKGLALPQEEASAVASLILSPEPGETVVDLAAAPGGKTAHMAELMKNEGKIYAFDVDS 285 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R+++++ L + ++ ++D +K+ D VL+DAPC+S GTI ++P++ W Sbjct: 286 ERIKRMKQILRWAGVEIAEVKKLDGRKAPEFLGEKIADRVLLDAPCTSDGTIAKNPELRW 345 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +I K Q++L+ +KPGG +++S CS+ +++EEVV+ L L Sbjct: 346 RLREKNIPKVVQLQKELIESAWKLLKPGGRLLYSTCSMLSEENEEVVRWFLERH-DDARL 404 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VPLN Y + G +R P GFF + + Sbjct: 405 VPLNGPYDEGFLP-------GTMRAWPH--------RHRTIGFFYALIEK 439 >gi|121602202|ref|YP_988662.1| NOL1/NOP2/sun family protein [Bartonella bacilliformis KC583] gi|120614379|gb|ABM44980.1| NOL1/NOP2/sun family protein [Bartonella bacilliformis KC583] Length = 428 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 82/438 (18%), Positives = 146/438 (33%), Gaps = 25/438 (5%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + L F S D+ + IV LR + +D Sbjct: 8 QAAIEVLHEIEVRHRPAGDALRDWGLSHRFAGAS--DRAAIGTIVYDALRRRYSLQWRMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + LL + + V A + + L Sbjct: 66 SD-----DIRDLAFGTLLDFG-----GMTIEQVDSVLAGDRFAPQLLGLKQRQSWQTRQL 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185 + + + P + + ++ ++ + L Sbjct: 116 EDAPDYIRSNVPQWCQTHLYPVFSDNWVVEAAALATRPSLDLRVNSLKATPKRVLKELAK 175 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + L ++ P F G + +QD + I L ++ + Sbjct: 176 TQVHSFSWFQQALRIAPTEQFNRHPNVQVEPSFQRGHFEIQDLGSQIVTHLVEAKASMQL 235 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT + + + ++ A D K RL + L R + I Sbjct: 236 LDYCAGAGGKTLALSSHMGNRGQIYAYDSDKIRLSPIFDRLRRAGVRNVQIRGNIEELKP 295 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + D VL+DAPCS TGT RR PD W + K Q +L QG++++KPGG +V Sbjct: 296 LIGMMDIVLLDAPCSGTGTWRRRPDFKWRLTLKQVQKRQAEQCAILNQGLNYLKPGGRLV 355 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL ++EE + + L+ P+N + + I D Sbjct: 356 YITCSLFFDENEEQISRFLKQHSNF---HPINMRELWQRHFSFST----MQPIFSDYGLT 408 Query: 423 IDGVSSGMDGFFAVALRR 440 + ++ DGFF L++ Sbjct: 409 LSPATTKTDGFFLSILQK 426 >gi|15887638|ref|NP_353319.1| Sun protein [Agrobacterium tumefaciens str. C58] gi|15155185|gb|AAK86104.1| Sun protein [Agrobacterium tumefaciens str. C58] Length = 429 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 96/452 (21%), Positives = 160/452 (35%), Gaps = 45/452 (9%) Query: 8 RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL + +L+ + +R + L F D+ + IV LR + Sbjct: 6 RLAGAIEVLADIEGRRRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMKLSHAWL 63 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D +SL LLR E ++ ++ Sbjct: 64 MDDDSAASLAYA-----VLLR--------------QWGKSFAELTAEFDGDKFAPAAPDA 104 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 ++ + +PEW + LE +G ER LA + A +DL Sbjct: 105 ERQQAFLSRSLSDAPAYIQGDVPEWVQSSLETAFG-ERWLAEAQALNERPTLDLRANTLK 163 Query: 187 ET------WAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIP 233 T + A L+ ++ + F +G + VQD + I Sbjct: 164 ATRDKVLKALEESGAEATRIARQGLRIPAGEGPSRLPNVTAELSFQKGWFEVQDEGSQIV 223 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L G VLD CA GGKT + + + +V A D ++RL + L R Sbjct: 224 ADLAGAREGEQVLDYCAGGGGKTLAMAASMNNKGQVHAFDADRKRLAPIIERLKRAGTRN 283 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + A ++ FD VLVDAPC+ TGT RR PD W ++ + Q + L Q Sbjct: 284 VQVHDRAAGLAPFQEKFDRVLVDAPCTGTGTWRRRPDTKWRLTARNLEERVQQQGEALSQ 343 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 FV+PGG +++ CS+ +++E+ V++ +P L A Sbjct: 344 AKGFVRPGGELLYVTCSVLPEENEQQVRRFCEENPEFAIGSALERWQSIFSGNANKPHSS 403 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++ DGFF ++R Sbjct: 404 D------GKTVTLTPATTDTDGFFFCLMKRKA 429 >gi|303245831|ref|ZP_07332113.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ] gi|302492614|gb|EFL52482.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ] Length = 451 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 94/442 (21%), Positives = 159/442 (35%), Gaps = 42/442 (9%) Query: 1 MKSGMN-----ARLVSSHLLSCVMRK-------RISLTCLLDLEYGDSAFRLLSQRDQIL 48 M N AR ++ +L+ V+ + L+ A L RD+ L Sbjct: 1 MSPTGNSAPPPARKLALAVLAKVLPQPSRRKGPGTGQDVQAALDAALLAAPGLDPRDRGL 60 Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLA 107 +V LR R+ + L ++++L ++ +IL+ V YA VD A Sbjct: 61 ATELVYGYLRLRGRMAFLCARFLKRP-DAVPAPVRRILELAAYEILFCSKVPAYASVDWA 119 Query: 108 VEQAKRDKENRHFAKLVNSILRR-------------VSREKIELLQRIAGISIIPEWFKE 154 V A R K + + + N++LRR R++ + ++ PEW Sbjct: 120 VS-AVRAKAGKGLSGMANAVLRRIAADPAAFEDPDFYCRDRCNEAEYLSRFYSCPEWIVA 178 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI-- 212 +G E A A + P + L V + +A+ G + + Sbjct: 179 MWLRDFGPEETRAYLTAQLEPAPLGLRVNRSRDGARALFDALAAAPGVLAADFPTLAFPA 238 Query: 213 -VSLPGF----------AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 LPG + A+ I L + D CA GGKT L Sbjct: 239 GTDLPGAAGLDLMAALADGRLSRQSAAAQRILYDLRLDDWPEPIFDACAGRGGKTLLLAE 298 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTG 320 +G KV A D+ RL L RL + ++ A +L+DAPCS G Sbjct: 299 AGKKVIAGDMHAGRLSGLGREAARLGVSPLGVLRGSATRLPLAPGRIGTILLDAPCSGLG 358 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + R PD W R +D+ QR +L + + PGG +V+ C+ ++E + ++ Sbjct: 359 VLARRPDSKWRRRPEDVAGLTRLQRAMLEAAYAALAPGGRIVYVTCTAHPAENEGNIDRL 418 Query: 381 LRSSPIPVELVPLNSAYWKSID 402 + + ++ Sbjct: 419 GARHHDLTLETEIPATPSPTLG 440 >gi|254467784|ref|ZP_05081190.1| sun protein [beta proteobacterium KB13] gi|207086594|gb|EDZ63877.1| sun protein [beta proteobacterium KB13] Length = 412 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 102/435 (23%), Positives = 186/435 (42%), Gaps = 47/435 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ +LS + + L + + ++ ++ IV +R D +L Sbjct: 8 AAKILSE-LISGRKIDTLFNRFLK-------EENNKNFIKDIVYGGIRDFYLNDYILKKF 59 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + ++ LL ++ QI + A++ VV+ AV+ AK+ N F LVN++LR Sbjct: 60 VKKDIN--DHLIKYLLMNTIYQINHQSKAEFTVVNEAVKAAKKINNN--FYNLVNAVLRN 115 Query: 131 VSREKIE--LLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLTV-KFDI 186 REK + + + P+W+ L Y + + + I + + + Sbjct: 116 YLREKDKLVTPEEMYIRYSYPQWWVSDLMKEYPNDYEAILAIGNTRAKTVIRINQRQISL 175 Query: 187 ETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + L + + I LPG+ G ++VQD +A + N Sbjct: 176 NDYIDLLEQANIDYELTLEDKYIQISNVKDITMLPGYERGHFYVQDPAAQLACDFLDIQN 235 Query: 242 NLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +++LDLC+APGGK + + D+SK R+ +R N+ RL L + I ++D Sbjct: 236 GMNILDLCSAPGGKATHILERFDVDLDCYDISKERINLIRSNMKRLQLKSNIIEKIDIN- 294 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 K +D +L+DAPCS +G +RR+ D+ R DI K + Q +LL +G +K GG Sbjct: 295 ----KRYDRILIDAPCSGSGVVRRNIDIKLMRKQQDIEKFSNQQLQLLEEGWKILKSGGK 350 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++ CS+ K ++E VV K L + + +K + ++ P+ Sbjct: 351 LLYVTCSIFKHENENVVMKFLSKNKDAASQDLIIPNGFKYQNT----------QLIPNQF 400 Query: 421 EKIDGVSSGMDG-FF 434 DG FF Sbjct: 401 ---------HDGLFF 406 >gi|319782260|ref|YP_004141736.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168148|gb|ADV11686.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 429 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 158/450 (35%), Gaps = 48/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + R+ + L F D+ + IV LR +L Sbjct: 8 AAAIEVLEDIGRRHRPVADALKDWGLSHRFAG--GGDRAAIGNIVYDALRHKRSAGWLLG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++ L+ ++ A++ ++ L+ + Sbjct: 66 QDTPRAIGFGALLLEW-------------GQTAQSLNEALD------GDKFAPPLLTAAE 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + A + +P+W E +G A + +DL V + Sbjct: 107 LQAIADGRLADAPDAVRADVPDWCAPLFERAFGSSWA-DEGAALATRPPLDLRVNTLQAN 165 Query: 186 IETWAHKLNAVMLPTGGIRLKE----------LPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +L I ++ + P F +G + VQD + I Sbjct: 166 RDKVLAELTGTGAKPAAIAPHGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAAA 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G + VLD CA GGKT + + + ++ A D K RL + + R Sbjct: 226 LAGAEAGMQVLDFCAGAGGKTLALSASMENRGQIFAHDAEKARLAPIFDRIRRSENRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 ++ D VLVDAPC+ +GT RR PD W + Q +L Sbjct: 286 VVTKPTELAPLGNHMDIVLVDAPCTGSGTWRRRPDAKWRLTQRQLDTRKGEQSAILDAAK 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE 410 ++VKPGG++V+ CS+ +++ E + + V + L + + A + + Sbjct: 346 AYVKPGGLLVYITCSVFDEENGEQIAAFRDRNSGFVPVDHRQLWDSRFPGHPAAARIGAK 405 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I ++P SG DGF+ ALRR Sbjct: 406 GDISLSP--------ALSGTDGFYFCALRR 427 >gi|323699391|ref|ZP_08111303.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132] gi|323459323|gb|EGB15188.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132] Length = 424 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 96/419 (22%), Positives = 158/419 (37%), Gaps = 30/419 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR V+ L + R + LD RD L + LR Sbjct: 7 KPLPAARRVALEALFRCLMNRQDIQASLDAALSSGVD---DPRDLGLATELSYGYLRLKG 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 RI+ VL L + ++ + V+ +IL+LD + YA VD AVE +K R Sbjct: 64 RIEYVLSRFL-KDPGKLNPKMRLAMGVAAYEILFLDKIPAYASVDWAVEFSKSKPGAR-L 121 Query: 121 AKLVNSILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKERVLAI 168 A L N++LRRV+ + + P+W + YG++ Sbjct: 122 AGLFNAVLRRVAELDGDAHDPDFFRKDASLPEFLSRWYACPQWLVDLWWREYGEKTATDY 181 Query: 169 SDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 +A + P + +L + + ++ + + S G + Q Sbjct: 182 LEAQLKPPALGFNLFGHPEADALYAEIAGWPELIDIEGMSFALPAGTSFEGEPDPPLARQ 241 Query: 227 DASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 +A V+ D CA GGKT L+ G V A D + RL L Sbjct: 242 SFAARQAVEALDPEMWDGPVWDACAGRGGKTRILLEKGLDVLASDPHRGRLAALSRE--- 298 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L +I E +A P ++ +L+D PCS G + R PD W R D+ QR Sbjct: 299 --LPGVEIFEANAATAEPPRVPGTILLDMPCSGLGVLSRRPDTKWKRRPADLGDLTLLQR 356 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + V+PGG + C+L+ ++++ +V + + E V + + D Sbjct: 357 EILDNALEQVRPGGRIAVITCTLNPEENQGLVARFVGDH----ERVAVEREWTTPSDSP 411 >gi|209542229|ref|YP_002274458.1| Fmu (Sun) domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529906|gb|ACI49843.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 429 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 102/460 (22%), Positives = 176/460 (38%), Gaps = 49/460 (10%) Query: 1 MKSGMNARLVSS-HLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M ARL ++ LLS + R + + + + + + D+ + A V LR Sbjct: 1 MTPS--ARLAAAIDLLSAMEATPRRPADAVANAFFRERRY--IGGGDRRAISARVWTVLR 56 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 + LD + + L ++A + + ++ + Sbjct: 57 HWRHLAWWLDRA------GAAATPRARLIAALALM-----PQPGEAPQDLFVSQDRYAPQ 105 Query: 119 HFAKLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + R + + A +P+W RLE +G + + A A Sbjct: 106 PLSAAERDLATRLRGQAMVHPDMPRAVRLEVPDWLLPRLEETFGAD-LDAEVAALAGEAT 164 Query: 178 IDLTVKFDIETWAHK--------LNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDA 228 +DL V T A + A L+ + + + F G+ +QD Sbjct: 165 LDLRVNLLKTTRAEAARLLAADGIMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDE 224 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + I V + VLD CA GK A + + + A DVS+ RLE L R Sbjct: 225 GSQIVVAAADARPGMRVLDYCAGAAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRLRR 284 Query: 286 LHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 ++ + D + FD VLVDAPC+ TGT RR+PD D+ + Sbjct: 285 AGVHNAERHLLVPGDRWARRRAASFDRVLVDAPCTGTGTWRRNPDARLRLTEQDLAELMA 344 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +L + V+PGG +V++ CS+ ++++++ + LR+SP + D Sbjct: 345 KQADILATASALVRPGGRLVYATCSILREENQDRIASFLRASPHFRRAETVP-------D 397 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +A L+ +G I ++P + G DGFFA L R Sbjct: 398 LAPDLAQDGMIALSP--------LRHGTDGFFAAILERTA 429 >gi|254373278|ref|ZP_04988766.1| sun protein [Francisella tularensis subsp. novicida GA99-3549] gi|151571004|gb|EDN36658.1| sun protein [Francisella novicida GA99-3549] Length = 426 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 101/448 (22%), Positives = 192/448 (42%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L K L+ + QI + YA ++ V A +D + KLV Sbjct: 57 KITALYLTQKTKVKAKV---LIMLGALQIFEIKQPYYATINETV-AACKDLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N ILR ++R ++ + +PEW + L+ Y + ++ + ++I L Sbjct: 113 NRILREITRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDYLVIAQAINAKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 + + + + LK+ + + F +G + +QD SA + Sbjct: 173 QNKNNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNQLFQQGYFTIQDISAQYAGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR-LHLYAEDI 293 NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL+R + ++ Sbjct: 233 IKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENLERLSENHNVNV 292 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + Sbjct: 293 FKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKNLQSKILANLWN 351 Query: 354 F-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + G +++ CS+ +++++ +++ L + N+A ID+ Sbjct: 352 NNLTDNGYLLYITCSILAEENQQQIKQFLAKN---------NNAEIIEIDILEKYKTSYG 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + DGF+ L++ Sbjct: 403 YQLLPSQQDG--------DGFYYCLLKK 422 >gi|307728146|ref|YP_003905370.1| sun protein [Burkholderia sp. CCGE1003] gi|307582681|gb|ADN56079.1| sun protein [Burkholderia sp. CCGE1003] Length = 479 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 107/449 (23%), Positives = 183/449 (40%), Gaps = 27/449 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V +L L + SA + + V+ I T+R L + ++ + Sbjct: 38 AAQAVGAVRL-GAALPAALQSVFV-SAPEGSAAAARGAVQDIAYRTMRRLGTAEWLIARL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L ++A ++ + + + VVD AV +E LVN+ Sbjct: 96 VKKAPP---PHVGHVLACALALLIDDEASAAYTPFTVVDQAVRAISARREFTFAKGLVNA 152 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LR RE+ + P W+ + + + + ++ + + Sbjct: 153 VLRNFLREREQLLTEAQSDEVARWNYPTWWIDAVRRAWPEAWQDVLAAGNTQGPLTLRVN 212 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 + +L + + + +PGF EGV VQDA A + QL Sbjct: 213 ARHSTVEAYLQLLEQHHIAASKAGEHAVKLATPMPVDRIPGFNEGVVSVQDAGAQLAAQL 272 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291 G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVARARRIGENLQRLKLEAEVRIG 332 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 333 DAGAPSKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVDEQRRILGAL 392 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VKPGG +++ CS+ ++ E Q + V L S+ A A + G Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNNHQDAVRL-DAPGQLLPSVARAPADTSAG 451 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G +S DGFF ++ Sbjct: 452 SH--AGGFADTSAGANSDHDGFFYARFQK 478 >gi|296533616|ref|ZP_06896179.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296266054|gb|EFH12116.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 376 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 137/385 (35%), Positives = 193/385 (50%), Gaps = 25/385 (6%) Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 LR L +DAVL+ L P ++ LR+ A++L L+ +A V V+ Sbjct: 14 VLRRLGSLDAVLEPSLRREPP---PEVRNALRIGAAELLLLETPPHAAVASCVDLV---- 66 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACIS 174 R FA LVN++LR+V+ L+ + G P W YG V AI+ A Sbjct: 67 -PRPFAGLVNAVLRKVAAAGPAALEELDGERLDTPGWLWSAWHGAYGP-AVRAIARAHRL 124 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 P +DL++K ++ G I LP FAEG+ W QDA+A++P Sbjct: 125 PAPLDLSLKPGTPA----PEGALMLPTGTARFPAGTRITELPAFAEGLAWAQDAAAALPA 180 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 +L + V DLCAAPGGKTAQL +GA VTA++ RL +LR N+ RL L + + Sbjct: 181 RLLAVTPGMLVADLCAAPGGKTAQLAAAGAAVTAVERDPTRLLRLRENMARLGLP-VESV 239 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + D ++ P FDA+L+DAPCS+TGTIRRHPDV + DI A QR+LL Sbjct: 240 QADVAEWDPGTRFDAILLDAPCSATGTIRRHPDVPHLKRPGDIATLAGLQRQLLAAAARL 299 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 + PGG +VF+ CSL ++ E P L+P + + ALSP+GW+R Sbjct: 300 LAPGGRLVFATCSLQPEEGEAQAA------SPPPGLLPDPIRPEEVPGLEAALSPQGWLR 353 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALR 439 PD+ + G+DGFF R Sbjct: 354 TRPDLWAE----QGGLDGFFMARFR 374 >gi|160900802|ref|YP_001566384.1| Fmu (Sun) domain-containing protein [Delftia acidovorans SPH-1] gi|160366386|gb|ABX37999.1| Fmu (Sun) domain protein [Delftia acidovorans SPH-1] Length = 470 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 93/457 (20%), Positives = 159/457 (34%), Gaps = 49/457 (10%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ + ++ + ++ L R++ + LR +++ Sbjct: 37 ACAELVKRTLTFEHPADAVVSRFFRENR--NLGPRERAALAETAYTVLRKKLLFESLARS 94 Query: 70 VLISSLPRKK-----YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 S R +S + L RV+ V A+ A+ + + + Sbjct: 95 GSGSRERRLAILGFAHSQEALARVA--------GKSEQGVKEALGFARAALSPQEL-QWL 145 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLTV- 182 ++ E +E +PEW L+ G++ A S +PL + + Sbjct: 146 DACDAVRPDELMEPH-----RHNLPEWLVAPLKQQLGEDFWAFAQSMEQAAPLDLRVNAL 200 Query: 183 KFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 +L + + ++ L F G VQD + + + Sbjct: 201 NAKRADVQKELADAGIAAEATPYSPWGLRVQGKPALARLDAFTRGAIEVQDEGSQLLALM 260 Query: 237 FGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED- 292 V+D CA GGK + S ++ A DVS RLE L+ L R L Sbjct: 261 LDAKRGEMVVDFCAGAGGKTLAIGASMRSTGRLYAFDVSGHRLEALKPRLARSGLSNVHP 320 Query: 293 ---IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 E D D VLVDAPCS GT+RR+PD+ W + I + Q +L Sbjct: 321 AAIAHERDDRVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAKAIEELTQKQAAILA 380 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-----ELVPLNSAYWKSIDMA 404 VKPGG +V++ CS+ Q++E + + V EL+ + + Sbjct: 381 SAARLVKPGGRLVYATCSVLPQENEAIAEAFASEHSDFVAMDAGELLAQLKVEQGNALCS 440 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++R+ P DGFFA R Sbjct: 441 GGETGTQYLRLWPQ--------RHETDGFFAAVWTRK 469 >gi|94311809|ref|YP_585019.1| Fmu (Sun) [Cupriavidus metallidurans CH34] gi|93355661|gb|ABF09750.1| tRNA and rRNA cytosine-C5-methylase [Cupriavidus metallidurans CH34] Length = 466 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 99/445 (22%), Positives = 163/445 (36%), Gaps = 53/445 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL V+ ++ + +++ L RD+ ++ + LR Sbjct: 56 RLLGKVLLFARPSDAVVSHYFRENS--KLGHRDRGIIAEAIFAVLRRRVEF----GQFAE 109 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S A + L + F ++ Sbjct: 110 SG---------------------TGSATRRLGLLGLAATLGRDVLSPFLHPDEAVWLDRL 148 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + +PEW + L +G+ A+ DA + P +DL V E Sbjct: 149 TTIERSSLAPRVRANLPEWLYDDLVARHGEAFTAALGDAWLRPAPLDLRVNTAKLSREEA 208 Query: 190 AHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +L + + ++ LP F G VQD + + L Sbjct: 209 LAELQTAGIAAELAPMAPAGIRLKGKPALNQLPLFINGGVEVQDEGSQLLCHLLAPRRGE 268 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296 V+D CA GGKT + S ++ A DVS++RL L+ L R L + E Sbjct: 269 MVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 328 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PD+ W + + +V+ Q +L VK Sbjct: 329 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQTPESVVELTAKQAAILDAAAKLVK 388 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK-SIDMAMALSPEGWIRI 415 GG VV++ CS+ + ++E +++ L S LVP++ + I++ + G + + Sbjct: 389 GGGRVVYATCSVLEAENEAIIRDFLASH-ENFRLVPVSEVLAEQKIEVPELPAEGGMLAL 447 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFFA L R Sbjct: 448 YPHI--------HQTDGFFAAVLER 464 >gi|315499648|ref|YP_004088451.1| fmu (sun) domain protein [Asticcacaulis excentricus CB 48] gi|315417660|gb|ADU14300.1| Fmu (Sun) domain protein [Asticcacaulis excentricus CB 48] Length = 429 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 96/463 (20%), Positives = 169/463 (36%), Gaps = 53/463 (11%) Query: 1 MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL ++ +L + + R +L ++ + +D+ + V LR Sbjct: 1 MTP--AARLQAASDILDLLSKTRRPAEEVLKDWGRNNRYAG--SKDRRAIADKVYQCLRA 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+ +D L + + +LD + + Sbjct: 57 RERLSFAMDSSAGR-----------ALVLGA--LHFLD---GVSLSEIDDL----YTGEG 96 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +A S+ R E + S +P + ERL++ YG + + + ID Sbjct: 97 YAPPKLSVAERKRLEAGDGEAPEWLESGLPAFVVERLKSVYGDDWLKEAEALMLPRAPID 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASAS 231 L V D L + ++ +LP F +G +QD + Sbjct: 157 LRVNGDRAPLIAGLEMLGYRPEPTPFSAFGVRLPADPPPNVRALPAFRQGTIEIQDEGSQ 216 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + L G + ++V+D CA GGKT Q + ++ A DV K RL ++ L R L Sbjct: 217 LAGFLAGAMPGMTVVDYCAGGGGKTLALLQAMQGEGRLIASDVEKTRLNNIKPRLTRAGL 276 Query: 289 YAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 AE + D VLVDAPCS +G RR P+ ++ + Q Sbjct: 277 EAELRQLGPDGEGMEDLEAQADLVLVDAPCSGSGVWRRRPETAHKLQEQEVARLHELQSA 336 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-----VELVPLNSAYWKSI 401 +L + VKPGG++ ++ CS+ ++E + P E + + + Sbjct: 337 ILHRASRLVKPGGLLAYATCSILPDENEMTADRFEADHPWFTPRPVAEALDSAAVTPEGA 396 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + ++ +R++P +S DGFF RR +P Sbjct: 397 ETLKNIAQGHRLRLSPG--------TSHTDGFFVSLYRR--KP 429 >gi|212225090|ref|YP_002308326.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212010047|gb|ACJ17429.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 442 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 86/411 (20%), Positives = 163/411 (39%), Gaps = 36/411 (8%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I R L ID +++ ++ S L+ LRV++ ++ Sbjct: 48 LTGIFYSIQRRLGLIDEIIEELIGVSPLILDPWLRATLRVAI-EVAIFRDPSERTRQHLK 106 Query: 109 EQA-----KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 A K ++ + + + +R+ + PEWF +R + Sbjct: 107 GLAQFLSKKTHPFVGYYYYDLLPRILEYVPKLDTEEKRLKWDYLFPEWFIKR-MKELIGD 165 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP------- 216 + A L + + V + + + E +++ + Sbjct: 166 EAEELLKALNETLPMSMRVNLLKTSVDEVEDYLKSKNVRFERSERVGTVLRILDSFNPEW 225 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 F +G Q+ +A++ + +V+DL AAPGGKTA + + + K+ A D+ Sbjct: 226 LFNKGWTIPQEEAAAVASLVLAPEPGETVVDLAAAPGGKTAHMAELMNNTGKIYAFDIDS 285 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R+++++ L R + + I+ D +K+ D VL+DAPC+S GTI ++P++ W Sbjct: 286 ARIKRMKEVLRRAGVEIAETIKADGRKAPEILGEKIADRVLLDAPCTSDGTIVKNPELRW 345 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +I K Q++L+ +KPGG +++S CS+ +++E VV+ L EL Sbjct: 346 RLREKNIPKVVQLQKELIESAWKLLKPGGRLLYSTCSMLPEENEGVVEWFLTRH-EDAEL 404 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +PLN Y G +R P GFF + + Sbjct: 405 IPLNGPYDGGF-------LSGTMRAWPH--------RHRTIGFFYALIEKK 440 >gi|256825115|ref|YP_003149075.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547] gi|256688508|gb|ACV06310.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547] Length = 502 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 99/473 (20%), Positives = 158/473 (33%), Gaps = 56/473 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 L + + L L+ RD + T+R D V+ + Sbjct: 39 LLAAVDEGAYANLELPHVLRRFR---LAGRDAAFATELAFGTVRQQGLYDLVIARATGRA 95 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 + L + LR+ Q L + V +A D V A R AKLVN+ + R++ + Sbjct: 96 VDTLDPELMRTLRLGAHQALSMRVPPHAAADQTVALA-RWVNGAGPAKLVNAAMHRMTEK 154 Query: 135 KIELLQRI-----------AGISIIPEWFKERLENF-----YGKERVLAISDACISPLYI 178 E A P W L E + + A +P + Sbjct: 155 DRETWVAEVTEGLQGPDLLAARHSHPTWVVRALMAGLVDRGRPVEEIDELLAAHNTPALV 214 Query: 179 DLTVKFDIETWAHKLNA---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L + + L + ++ +G VQD + + Sbjct: 215 SLVARPGWVEVSELLEHPAVEEGRWAPTAATLSEGAPAAVSAVEQGRAGVQDEGSQLAAL 274 Query: 236 LFGT-----LNNLSVLDLCAAPGGKTA----QLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ LDLCA PGGK A GA++ A ++ R E +R L+ Sbjct: 275 ALAGAPTRGQDSGLWLDLCAGPGGKAALLAATAHERGARIVANELHPHRAELVRGTLNPG 334 Query: 287 HLYA-------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 L + + FD VLVD PC+ G +RR P+ W R D+ Sbjct: 335 GLPDGAAPQAEVTVGDGADLAAERPDAFDRVLVDVPCTGLGALRRRPEARWRRQPADLAS 394 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAY 397 A QR LL + V+PGG++ + CS ++ VV V +E+ P+ Sbjct: 395 LAPTQRSLLHAALDAVRPGGVMAYVTCSPHPAETSVVVDDVRARRDDVELLEVAPVLREV 454 Query: 398 WKSIDMAMALSPEGW-------IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + A EG +++ P + G D + LRR Q Sbjct: 455 APATSAADLEPLEGARGARATSVQLWPHV--------HGTDAMYIALLRRTPQ 499 >gi|257125452|ref|YP_003163566.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b] gi|257049391|gb|ACV38575.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b] Length = 433 Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 95/456 (20%), Positives = 195/456 (42%), Gaps = 38/456 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N +L +LL + + L+ + + ++++++ + +VN+ ++ L Sbjct: 1 MAKKKNIKLDIVNLLDEI-QNGKYSNIQLNYYFSKKNY---TKKEKMFITNVVNIVIKNL 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ID ++ + + RK ++QLLR+SVAQ+ +++ + V+ A E AK N H Sbjct: 57 IYIDYLIGKSVRNVKKRK---IKQLLRISVAQLFFMESDNAGVIFEAGEIAK--ILNAHQ 111 Query: 121 AKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 VN+ L+ E+I R + + P+WF +++ Y + + + + Sbjct: 112 VGFVNAALQTILKNKEKFNEEIPKDNRESIVLSYPQWFVNKMKIDYPDDYLEML-KSYKK 170 Query: 175 PLYIDLTVKFDI------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 Y+ + + E + +L + G +I + G +QDA Sbjct: 171 RSYLSVRFDKNKITSEKFEELLKNIKTDVLFSVGEVYYLSNANIFDTEIYKNGNVVIQDA 230 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 S+ + V+ G + +VLD C+APGGK + + K+T+ D+ + +++ L ++ Sbjct: 231 SSYLAVKNLGVKDGETVLDACSAPGGKSLAILQLFNPKKLTSTDIHEHKVKLLNELKNKY 290 Query: 287 HLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ DA FD +L+D PCS G +R+ P+ ++ +DI Q+ Sbjct: 291 GYSNFEVKLNDAAQIENLNTKFDKILLDMPCSGLGVLRKKPEKIYELTANDIKSLKKLQK 350 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 K+ + +K GG +++S C+ K ++ +Q L L + +++ Sbjct: 351 KIFESAYNCLKNGGEMIYSTCTFSKNENTNNIQYFLEKYEDLEILEVVIPENIETVR--- 407 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + I + +DGF+ LR+ Sbjct: 408 --DEFGGVYI--------SYKNEYLDGFYIAKLRKK 433 >gi|209515830|ref|ZP_03264692.1| sun protein [Burkholderia sp. H160] gi|209503678|gb|EEA03672.1| sun protein [Burkholderia sp. H160] Length = 479 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 101/449 (22%), Positives = 174/449 (38%), Gaps = 27/449 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V +L L + + + V+ I T+R L ++ ++ + Sbjct: 38 AAQAVGAVRL-GAALPAALQSVFVTVPEGNAAAA-RGAVQDIAYRTMRRLATVEWLIAKL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVAD----YAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L ++A ++ + + + VVD AV +E LVN+ Sbjct: 96 VKKAPP---PHVTHVLECALALLVDDEASAAYTSFTVVDQAVRAIGARREFAFAKGLVNA 152 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LR RE+ + P W+ + ++ + + + + + Sbjct: 153 VLRNFLRERDTLLAAVQADEVARWNYPAWWIDAVKRAWPEAWQSVLDAGNTQGPLTLRVN 212 Query: 182 VKFDIET-----WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + A + +PGF+EG+ VQDA A + QL Sbjct: 213 ARHSTVDAYLQVLQRQQIAATKAGEHAVTLATAMPVERIPGFSEGIVSVQDAGAQLAAQL 272 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291 G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANIQLVALESDASRARRIGENLRRLKLEAEVRIG 332 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 333 DAGAPAQWHDDLDQPFDRILADVPCSASGIVRRHPDIRWLRRQSDIAALVAEQRRILDAL 392 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VKPGG++++ CS+ ++ E Q V L S G Sbjct: 393 WPLVKPGGVLLYVTCSIFPEEGEMQAQWFGNQHQDAVRLDAPGQLLPSVARAPADPSA-G 451 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P DGFF ++ Sbjct: 452 SHAGQPTEFSAGANSDH--DGFFYARFQK 478 >gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1] gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1] Length = 425 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 91/455 (20%), Positives = 185/455 (40%), Gaps = 58/455 (12%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N+R ++ +L V + + LL+ +S + + L+ AIV+ T+ +D Sbjct: 8 NSRKIAFEILKKVFKNKSFSNILLNDVSKMP----ISDKFKNLIFAIVHGTITNQILLDH 63 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V ++ + + +Q LL +S+ Q+ +L + YAVV+ +V AK N F+ L+ Sbjct: 64 VSRKLID--VKKTNIDIQILLWMSIYQLRFLKTIPQYAVVNESVMIAKSV--NHKFSGLL 119 Query: 125 NSILRRVSRE--------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 N+ L++V + Q+I + P+ +E YGK+ ++ Sbjct: 120 NACLKKVIKNEEELFDFSFKSENQKICIENSFPKNLFNLIEKGYGKDIAKKVAIDSNQKP 179 Query: 177 YIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 I V E + + + ++IV + G +QD + Sbjct: 180 VISFRVNTLKISENDFFEKYKDEYELEKTEIKNCLI--SKKAIVKSDAYTSGQITIQDPA 237 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + VLD+C+APGGK ++ + +VT ++S+ +++ + N+ RL Sbjct: 238 SILVGNVLNPTKGSKVLDMCSAPGGKLTHLSMIMENTGQVTGFEISENKIKLIEENIKRL 297 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF-QR 345 + DA K+ FD +L+DAPCS G ++R P++ + + + Q Sbjct: 298 DCKNISLKCGDATLINEKENFDFILLDAPCSGFGVLKRKPEIKINNIEINNINNIVNIQE 357 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 KLL +K G++V+S C+++ +++ ++K + + Sbjct: 358 KLLDTAYYNLKQQGVMVYSTCTINPAENQNQIKKFIEKYKDIKIISE------------- 404 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ G DGF+ + + Sbjct: 405 ---------------NQLFGYEMNTDGFYICKMIK 424 >gi|323524427|ref|YP_004226580.1| sun protein [Burkholderia sp. CCGE1001] gi|323381429|gb|ADX53520.1| sun protein [Burkholderia sp. CCGE1001] Length = 479 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 179/449 (39%), Gaps = 27/449 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V +L L + SA + + V+ I T+R + ++ + Sbjct: 38 AAQAVGAVRL-GAALPAALQSVFV-SAPEGSAAAARGAVQDIAYRTMRRFGTAEWLIARL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L ++A ++ + + + VVD AV +E LVN+ Sbjct: 96 VKKAPP---PHVGHVLACALALLIDDEASAAYTPFTVVDQAVRAISARREFSFAKGLVNA 152 Query: 127 ILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LR RE+ E P W+ + + + ++ + + Sbjct: 153 VLRNFLRERDVLLTEAQADEVAHWNYPTWWIDAVRRAWPDAWQDVLAAGNTQGPLTLRVN 212 Query: 182 VKFDI-ETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + E + H L A P + +PGF EGV VQDA A + QL Sbjct: 213 ARHSTVEAYLHVLEQHHIAASKVGEYAVKLATPMPVDRIPGFNEGVVSVQDAGAQLAAQL 272 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291 G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKLEAEVRIG 332 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 333 DAGAPSKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVEAQRRILDAL 392 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VKPGG +++ CS+ ++ E Q V L S Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNKHQDAVRLDAPGQLLPSVARAPADPSAGS 452 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E+ G +S DGFF ++ Sbjct: 453 HA---GEFAERSAGTNSDHDGFFYARFQK 478 >gi|329115347|ref|ZP_08244101.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter pomorum DM001] gi|326695326|gb|EGE47013.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter pomorum DM001] Length = 437 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 91/439 (20%), Positives = 165/439 (37%), Gaps = 44/439 (10%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 R + + + + + + D+ + +V +R R+ L+ K Sbjct: 22 RKPADAVANSFFRERRY--MGGGDRRAISGLVWDVMRAWRRLGWWLEQ--------KGQV 71 Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141 LR ++L+ D A V+ EQ R ++++ + Sbjct: 72 ASARLRAGA-RLLF-DGFSLAEVEEMFEQ-GRFAAGALTRGELSTLTPLAGKTLDNPEMP 128 Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--------DIETWAHKL 193 A +P+W L +++ A +P +DL V L Sbjct: 129 RAVRLELPDWLLPHL-EATFGDKLEEELAAMSTPAPLDLRVNILRGPRKEAQRSLACEGL 187 Query: 194 NAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 +A P L+ + + F +G+ +QD + + + G + VLD CA Sbjct: 188 HAEPTPLSPWGLRLPARLPVTTSVAFRDGLVEIQDEGSQLVAAISGVEPQMRVLDYCAGA 247 Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKKL 306 GGK A ++ + + A DVS RLE L R ++ + D + Sbjct: 248 GGKTLAMAMMMENKGHIVACDVSAPRLEGAVKRLRRAGVHNVERHLLVPGDKWAKRRAGS 307 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VLVDAPCS TGT RR+PD + D+ + Q ++ + + V+ GG +V++ C Sbjct: 308 FDRVLVDAPCSGTGTWRRNPDARFRTTEQDLTELLEKQAAIMDRAAALVRAGGRMVYATC 367 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 SL + ++ + V L P + + +++ ++S + + Sbjct: 368 SLLRAENMDQVTAFLARHPDFRLVPSGSPEMPQALRQESSIS--------------LSPL 413 Query: 427 SSGMDGFFAVALRRLIQPK 445 G DGFFA + R P+ Sbjct: 414 RDGTDGFFAAVMERAA-PE 431 >gi|167043506|gb|ABZ08202.1| putative NOL1/NOP2/sun family protein [uncultured marine microorganism HF4000_APKG2J17] Length = 444 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 92/467 (19%), Positives = 157/467 (33%), Gaps = 49/467 (10%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + LL + D + + D+ V I+ +R Sbjct: 1 MTPG--ARMQAAIELLELIWSGIEPADRAADDYFRKRRYAG--AGDRRAVNGILYDVMRH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+D + + + + + RV +A++ + + + A Sbjct: 57 RARLDWWIG----RTGVGLEPTART--RV-IAELALENKSSPEETGVLFNGA-SHCPEPM 108 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 R P+W L+ + ER+ A A +D Sbjct: 109 NPAEAALAEALHGRPLTHADMPAPVTLEYPDWMDRSLKALWP-ERLAAEMSALNQQAPVD 167 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASA 230 L V + L + T L + + + F +G VQD + Sbjct: 168 LRVNMLKTTPDQARQSLKEDFVETEPTPLSPIGLRLTARARLAGTAAFRKGWIEVQDEGS 227 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV------------TALDVSKRRLEK 278 + L + V+D CA GGK L A D+S RLE+ Sbjct: 228 QLIALLADARPGMKVVDFCAGGGGKALALAACMGSRGNGGGGTIEGSLWATDISGYRLER 287 Query: 279 LRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + L R D + D VL D PC+ TG RR PD W Sbjct: 288 MTPRLKRAGAEKIKTRVIAALHDDWIGKNAGKMDRVLADVPCTRTGAWRRVPDARWRSTL 347 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 DD+ QR++L VKPGG ++++ CSL ++++E + L + +P++ Sbjct: 348 DDLDDMIAVQRRILASAQILVKPGGRLIYATCSLLQEENERQLAWFLEKH-GDFQALPID 406 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ + +R++P S+G DGFF + R Sbjct: 407 QVWAETVGGPPPPTGP-CLRLSP--------ASTGTDGFFCAVMERK 444 >gi|148654179|ref|YP_001281272.1| Fmu (Sun) domain-containing protein [Psychrobacter sp. PRwf-1] gi|148573263|gb|ABQ95322.1| Fmu (Sun) domain protein [Psychrobacter sp. PRwf-1] Length = 528 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 113/527 (21%), Positives = 210/527 (39%), Gaps = 108/527 (20%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+ + L + ++ SL+ LLD L+ D+ A++ TLR Sbjct: 13 NVRVAVINTLLSI-QQGQSLSGLLDPLL-----NSLNGDDKGFAHALLLTTLRHWHATAR 66 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +LD + + + + ++ +++ + Q+LYL+VAD+A + VE A + + + LVN Sbjct: 67 LLDSLADNPIDEIE--VRTTIQLGITQLLYLNVADHAAIHETVE-AVKHIDYARASGLVN 123 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYIDLT-VK 183 ++LR+V++ + ++ +P W ++L+ + + +P+++ + ++ Sbjct: 124 AVLRKVAKNPNKFRKKANKNHSLPNWLAQQLKVDWREHYDELTQSLRQSAPMFLRVNGLQ 183 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE---------------------SIVSLPGFAEGV 222 D +++ +L + I L+ + + LP F EG+ Sbjct: 184 TDSQSYLAQLTEADIAAELIALETSLKMPDTGETIGIKQQAIELIDSVPVSRLPEFEEGI 243 Query: 223 WWVQDASAS----------IPVQLFGTLNNLSVLDLCAAPGGKTAQL------------- 259 VQDA A V ++ +LD CAAPGGK A Sbjct: 244 ASVQDAHAQLAAPIIDALLQQVMSANPAEHIRLLDACAAPGGKLAHWLELLGNQEKQQTG 303 Query: 260 ------------IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPK 304 + K+TA+D R+ ++ NL+RL L A + +D Sbjct: 304 LFHVKQSDSQESTIDKVKLTAIDNEAPRITRIFENLERLQLPAPIVNSKLHLDIECVDAT 363 Query: 305 KL-----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 FDA+L+DAPC++TG IRRHPD+ R+ +D+ + Q ++L Sbjct: 364 TWQAKAVSADSSGFDAILLDAPCTATGVIRRHPDITLLRNEEDVQHTVQLQEQILDNLWP 423 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +++ CS+ KQ++ E +Q L V + + W + E Sbjct: 424 QLKTGGYLLYVTCSILKQENVEQMQAFLSRHKDAVAIAFDSETNW-------GIEQEVGR 476 Query: 414 RITPDMLEKI--------------------DGVSSGMDGFFAVALRR 440 + P +G DGF+ L++ Sbjct: 477 QCLPIYKMTEALAPIAAQDDTPEAAKVQVNAQAPAGGDGFYYAVLKK 523 >gi|206891137|ref|YP_002248173.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743075|gb|ACI22132.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 441 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 100/468 (21%), Positives = 179/468 (38%), Gaps = 66/468 (14%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R V+ +L+ V+ + L L + + + D+ + ++ LR L ID + Sbjct: 6 PRKVAVEVLNNVVGTKKPLKFALTE----NILSMFDKADRAFLLEVIYGVLRNLYYIDWL 61 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH------- 119 L+ S + LR ++ Q++++ + YAV + V K + Sbjct: 62 LEDFYKSR-EKLSMYTINNLRCAIYQLVFMHIPAYAVANETVNVEKSFNGKPNVVNAILR 120 Query: 120 --FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 K + R++ + + ++ + PEW R + V A+ A Sbjct: 121 NFLRKYQADEIFRITEQMQTDNKNLSVVYSHPEWLITRWLKRFQLNEVKALLKANNEKPP 180 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA--------EGVWWVQDAS 229 I + VK + + I+ G+ W VQD + Sbjct: 181 ITIAVKPEERQMIGEYFTQKGFKVSFSKHVASGLIIEGQGYEIRKTLKESPFFWIVQDEA 240 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + L +LD CA+PGGKT ++ + ++ +K+RLE L+ N+ R+ Sbjct: 241 SQLVCFLLEPFEGACILDACASPGGKTLLTAALIKKGTIICIENNKKRLENLQENIARVK 300 Query: 288 LY----AEDIIEMDAFDYCPK----------KLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + I D K FD +++DAPCSSTG IRR+PDV + + Sbjct: 301 KFLPDVEIQPILADICQISLKKHLDSLGFNTHKFDRIILDAPCSSTGVIRRNPDVRYRVN 360 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +I + + Q+ +L F+ GI+V+S CS + ++ EEV++ L+ + Sbjct: 361 EQEIKRLSKTQKLMLENVSQFLVKNGILVYSVCSTEPEEGEEVIESFLQKHDEFSSIKK- 419 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R P + GMDGFF L R+ Sbjct: 420 -------------------LRTYPHI--------DGMDGFFMGKLLRI 440 >gi|33596603|ref|NP_884246.1| hypothetical protein BPP1987 [Bordetella parapertussis 12822] gi|33573304|emb|CAE37287.1| conserved hypothetical protein [Bordetella parapertussis] Length = 433 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 96/450 (21%), Positives = 161/450 (35%), Gaps = 61/450 (13%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V++ +L + RD+ + V LR L R S Sbjct: 1 MLGEVLQWTYPADAVLSHWLRAHP--GMGGRDRAELAQAVYDVLRHLRRY----RQFAES 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L +L ++ + V+ + + + R Sbjct: 55 GVGPATRRL-AILGLAA-------TMNPEVLAEGL-------------GADEAAWLQRIR 93 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189 A + +P+W ERL E + DA P +D+ V Sbjct: 94 HIDVATLPRAVRASVPDWLDERLAQLDDSEA---LLDALNRPANLDIRVNPLKAERDPML 150 Query: 190 -------AHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 A + + +P ++ + P F +G VQD + + L G Sbjct: 151 AVLRAGPAGRFDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRR 210 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 ++D CA GGKT L+ S ++ A DVS RL + + R L + Sbjct: 211 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 270 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D VLVDAPCS GT+RR+PD+ W + I + Q ++L Sbjct: 271 ENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARC 330 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V PGG +V++ CSL +++ E ++ L P L + ++ ++ +++ Sbjct: 331 VAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGP---YVQ 387 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + PD+ G DGFFA R +P Sbjct: 388 LRPDV--------HGTDGFFAAVFERR-KP 408 >gi|33601158|ref|NP_888718.1| hypothetical protein BB2175 [Bordetella bronchiseptica RB50] gi|33575593|emb|CAE32671.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 433 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 95/450 (21%), Positives = 160/450 (35%), Gaps = 61/450 (13%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V++ +L + RD+ + V LR L R S Sbjct: 1 MLGEVLQWTYPADAVLSHWLRAHP--GMGGRDRAELAQAVYDVLRHLRRY----RQFAES 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L +L ++ + V+ + + + R Sbjct: 55 GVGPATRRL-AILGLAA-------TMNPEVLAEGL-------------GADEAAWLQRIR 93 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW---- 189 A + +P+W ERL E + DA P +D+ V Sbjct: 94 HIDVATLPRAVRASVPDWLDERLAQLDDSEA---LLDALNRPANLDIRVNPLKAERDPML 150 Query: 190 -------AHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 A + + +P ++ + P F +G VQD + + L G Sbjct: 151 AVLRAGPAGRFDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRR 210 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 ++D CA GGKT L+ S ++ A DVS RL + + R L + Sbjct: 211 GEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAIDS 270 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D VLVDAPCS GT+RR+PD+ W + I + Q ++L Sbjct: 271 ENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQHRILKSAARC 330 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V PGG +V++ CSL +++ ++ L P L + ++ ++ +++ Sbjct: 331 VAPGGRLVYATCSLLAEENAGQAERFLAEHPDFERLDAAQLLANRCANLTLSGP---YVQ 387 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + PD+ G DGFFA R +P Sbjct: 388 LRPDV--------HGTDGFFAAVFERR-KP 408 >gi|288573288|ref|ZP_06391645.1| Fmu (Sun) domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569029|gb|EFC90586.1| Fmu (Sun) domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 473 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 186/452 (41%), Gaps = 43/452 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + V R+ + L + +S++D+ L +V +R ++ Sbjct: 39 EAALEVWREV-RRGRFASESL-----RAISDRVSEKDRPLAATLVYSLIRRESLWKEIVG 92 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV-VDLAVEQAKRDKENRHFAKLVNSI 127 L + +++ L V A L L + V V+ VE K + +++VN++ Sbjct: 93 RFLKTGSSGVSPAVRDALMVGAAGSLELRTFEPRVLVNALVEWTK--CRDERGSRVVNAV 150 Query: 128 LRRVSREKIEL---------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 LRR+ E+ +A S +P W + E+ +G+ A+ + P+ + Sbjct: 151 LRRIVEGGPEILAEIERSVAFSDLAMRSGVPLWAAKSWESSFGRIEGRALIELHSQPVSL 210 Query: 179 DLTVKF--DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASA 230 L V D +L +P + LPG+ EG Q S+ Sbjct: 211 ALRVSTGVDRSEMVQRLEEGGVPAVESPDLPFSIRLEGTALPTILPGYDEGKITPQSESS 270 Query: 231 S-IPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +P+ G +LD+CA GGKT Q A + D+S R++ ++RL Sbjct: 271 MLVPLAFTGRGKFSRLLDMCAGRGGKTGQLAQAFPEACLEGWDLSGPRIKAALKEMERLG 330 Query: 288 LYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + D+ + P L D VL+DAPCS +GT RRHP+ W D++ + Q K Sbjct: 331 ISDRVKLSVGDSMELDPSFLPDGVLLDAPCSGSGTWRRHPESKWRLSQDELARYGAMQAK 390 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + + V GG V++ CSL ++++E+VV KV+ VEL P + + + Sbjct: 391 LLGRALDLVSTGGTVLYCTCSLFREENEQVVAKVMSGRSDVVELEPPH----ELVSRCRK 446 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 P G+ PD DGF+ L Sbjct: 447 GRPWGYY-TWPDNPW--------TDGFYMALL 469 >gi|260462689|ref|ZP_05810895.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075] gi|259031595|gb|EEW32865.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075] Length = 429 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 92/450 (20%), Positives = 159/450 (35%), Gaps = 48/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + R+ + L F D+ + IV LR +L Sbjct: 8 AAAIEVLEDIGRRHRPVADALKDWGLSHRFAG--GGDRAAIGNIVYDALRHKRSAGWLLG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++ + + A ++ L+ + Sbjct: 66 EDTPRAIG-----------FGALLLEWGQTAQS--------LNGALDGDKFAPPLLGATE 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + E+ A + IP+W + E +G V A + +D+ V D Sbjct: 107 LQAIAERRLAHAPSAVRADIPDWCEPLFERAFGASWVE-EGAALATRPPLDIRVNTLQAD 165 Query: 186 IETWAHKLNAVM----------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 +L + I ++ + P F +G + VQD + I Sbjct: 166 RNKVLAELADTGAKPARIAPNGIRIAPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAAT 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G ++ VLD CA GGKT + + + ++ A D K RL + + R Sbjct: 226 LAGAGASMQVLDFCAGAGGKTLALSAQMGNTGQIFAHDAEKARLAPIFDRIRRSENRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 ++ A D VLVDAPC+ +GT RR PD W + Q +L Sbjct: 286 VVTKPAELAPLSGHMDVVLVDAPCTGSGTWRRRPDAKWRLTQRQLDARKGEQSAILDAAS 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE 410 +VKPGG++V+ CS+ +++ E V + V + L +++ + A + Sbjct: 346 IYVKPGGLLVYITCSVFPEENGEQVAAFRGRNSGFVPVDHRALWDSHFPGHEAAARIGAG 405 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I ++P SG DGF+ A+RR Sbjct: 406 GDISLSP--------ALSGTDGFYVCAMRR 427 >gi|75676329|ref|YP_318750.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi Nb-255] gi|74421199|gb|ABA05398.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi Nb-255] Length = 432 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 95/464 (20%), Positives = 160/464 (34%), Gaps = 57/464 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ + +RI L F D+ + +V LR Sbjct: 1 MTPS--ARLSAAIEVIEAIDNQRIPAAKALKEWGTAHRFAG--SGDRAAISGLVYDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D L L++ ++ A R Sbjct: 57 QASSAWIMDDDTPR------ARLLGTLKL------------ERGIN-TDAIASLCDGGRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + R+ + P+W L+ +G +R + +D Sbjct: 98 APEPLTEGERQALASRSLGDAPAHIAGDYPQWLDVYLDEAFGDDRAAEAAAMACRAP-LD 156 Query: 180 LTVKFDIETW------AHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQD 227 L + L P + L+ + + I + F +G VQD Sbjct: 157 LRINTLKAKRDKVLGSLQHLGVTATPWSPLGLRIMLGADARNPGIQAEEEFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 + I L G V+DLCA GGKT ++ ++ A D KR+L + L Sbjct: 217 EGSQIAALLSGARPGEQVIDLCAGAGGKTLTLAAMMQGRGRLIATDRDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ ++ D + D VL+DAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNAEVRTPKGEDDPLSDIRASADLVLIDAPCTGTGTWRRNPDAKWRMRPGALDIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + + VKPGG VV+ CS+ Q++ ++K + P + P +A Sbjct: 337 KDQAEVLDRASALVKPGGRVVYITCSVLPQENSGQIRKFIGRHPDFSVIPPSPTASVLWD 396 Query: 402 DMAMAL-----SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L S EG + + +G DGFF L + Sbjct: 397 RTDDFLAAVYASDEGLL---------MTPRRTGTDGFFVSILTK 431 >gi|298529651|ref|ZP_07017054.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511087|gb|EFI34990.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 417 Score = 181 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 164/454 (36%), Gaps = 52/454 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R V+ +++ +R L +LD + RD+ L + LR+ Sbjct: 1 MPQASDPRAVALNVVLDALRPGRDLQMVLDRNLDP----EMDLRDRSLATELAYGYLRYK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 R+D VL+ L S ++ L+ ++ +I +L + DYA V AV ++ +R Sbjct: 57 GRLDFVLNCFLKSP-AGLSGKIRVLMGLAAYEIFFLERIPDYAAVSRAVALTRKRFGSR- 114 Query: 120 FAKLVNSILRRVS-----------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + LVN++LR+ ++ + ++ PEW + + YG + Sbjct: 115 MSSLVNAVLRKCCRVDAFDPDFFRQDHPGEMLFLSRFYSCPEWVVKLWQKDYGTDMAREY 174 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQD 227 + + + + + V+ G L + L Q Sbjct: 175 LKQSLQKPAAGVRLAPGEDAGRLDEHYVLQRIGPSILLRDNYPGLEDLE--KNKKVVRQS 232 Query: 228 ASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + G + S D+CA GGKT + G +V A D RL L+ L Sbjct: 233 FAGQKTLWELGMGDWKSPVWDMCAGRGGKTMLMSSQGLQVWASDNYLPRLAGLKKELLEQ 292 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + KK VLVDAPC+ G + R PD W R D++ Q++ Sbjct: 293 VQ--VQVFAAQGQSPPLKKSSGTVLVDAPCTGLGVLSRRPDTKWKRSPRDVLDFCRVQKE 350 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 LL + + G +++ C+L +Q+++E V L+ Sbjct: 351 LLAAAANVLPSKGQLIYVTCTLSRQENQEQVTDFLKKHKDFE------------------ 392 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ ++ G FF L+R Sbjct: 393 -----CLQTYGTGADEDLGEF-----FFGARLQR 416 >gi|260222513|emb|CBA32151.1| Ribosomal RNA small subunit methyltransferase B [Curvibacter putative symbiont of Hydra magnipapillata] Length = 457 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 105/413 (25%), Positives = 180/413 (43%), Gaps = 32/413 (7%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105 + V+A+ R + R A+ + P +L L+ V + ++ +V+ Sbjct: 58 RGGVQALSFRAWRNMGRAKAIRAQLAKRPPPVAVDTLLCLVLALVWDTSHALYDEFTLVN 117 Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREK----IELLQRIAGISIIPEWFKERLENFYG 161 AVE AK+ A +N+ LRR RE+ R P W+ +R++ + Sbjct: 118 QAVECAKKTPSAAAQANFINACLRRFLREREALVTATNDRPEARWNHPAWWIKRVKEEHP 177 Query: 162 KERVLAISDACISPLY-IDLTVK-FDIETWAHKLNAVMLPT----GGIRLKELPESIVSL 215 ++ + +A P + + V+ + +L + + G + + +L Sbjct: 178 QDWQTILQNANRHPPMTLRVNVRKVQASEYHQQLKSAGIDVALESGSLLELTKAVPVSAL 237 Query: 216 PGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALD 270 PGF+EG+ VQD +A + + + +LD CAAPGGKTA L+ A+V AL+ Sbjct: 238 PGFSEGLVSVQDGAAQMAAKLLLAGVPAHGHPRILDACAAPGGKTAHLLELCDAEVLALE 297 Query: 271 VSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 V +R E++ L RL L A + D + FD VL+DAPC+++G +RRHPD+ Sbjct: 298 VDGQRAERIHQTLSRLGLTANVQTADAADTGTWWNGNPFDYVLLDAPCTASGIVRRHPDI 357 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W R D+++ A Q+KLL S +KPGG +++ CS+ + + + V+ L S+ V Sbjct: 358 RWLRRESDVLQLAMEQKKLLAALWSTLKPGGKLLYCTCSIFRAEGADQVKSFLESNKDAV 417 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L +S ++ DGFF + Sbjct: 418 LLPSPGHLLPQSGQSGQDVADN---------------QHGDHDGFFYALFEKK 455 >gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica RCB] gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica RCB] Length = 419 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 110/444 (24%), Positives = 180/444 (40%), Gaps = 56/444 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + + V + LL + + V+ +V +LR R D L + Sbjct: 16 AARIDAAVFAGQSLADGLLAR---------VDPAARPAVQDLVYGSLRAYGRGDFFLGRL 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L L ++ ++ LL VS+ ++ A + VVD AV A N F LVN++LR Sbjct: 67 LDKPLDVEE--VRALLLVSIYRLETRPDAAHTVVDQAVSAAGE-LANGRFRGLVNAVLRN 123 Query: 131 VSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK-F 184 R++ L +S P+W+ +L+ Y + ++ P + + V+ Sbjct: 124 FLRQQEALVAALADDAVAVSQHPDWWLAQLQAAYPDDWQRIVAAGNAPPPMGLRVNVRRA 183 Query: 185 DIETWAHKLNAVML----PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + + +L + P + SL GFA G+ VQD A + L Sbjct: 184 SRDDYLARLTDAGISATAVGESGLALAKPVPVESLLGFAAGLLSVQDPGAQMAASLLDPE 243 Query: 241 NNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA- 298 VLD CAAPGGKTA L S + ALD+ R ++ NL RL L A + D Sbjct: 244 PGSRVLDACAAPGGKTAHLLERSDLDLLALDLKPSRCRRIEENLSRLGLTA-SVKAADCV 302 Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FDAVL D PC+++G +RR+PD W R DI A Q ++L V+ Sbjct: 303 KLDTWWDGRPFDAVLADVPCTASGVVRRNPDTKWLRREADIFSFAKTQARILDALWQVVR 362 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ ++ + + L P ++ Sbjct: 363 PGGKLLYVTCSVFPTENGVQIARFLERQPEARRC--------------------HEEQLL 402 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P ++ DGF+ L + Sbjct: 403 P---------TADHDGFYYCLLEK 417 >gi|120435407|ref|YP_861093.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii KT0803] gi|117577557|emb|CAL66026.1| ribosomal RNA small subunit methyltransferase B [Gramella forsetii KT0803] Length = 403 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 168/454 (37%), Gaps = 66/454 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L+ + + ++ RD+ + +R+ Sbjct: 1 MRLHRNLVFATVDALAEIFNEGNYADKVIAKTLKRDKRWG--SRDRSFIAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + R+ + R+ V R + Sbjct: 59 RLYAEIAE--VKEPFKRED-----IFRMLA-----------------VWCVLRGVTIPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + + RR+ EL + +P+W E E G++ A + L Sbjct: 95 PQFEKTPERRIKGRFDELSRIRKFRESVPDWMDELGEKELGEKVWTKEIHALNEQAPVIL 154 Query: 181 ---TVKFDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 +K + + A KL+ + T G+R ++ F +G++ VQDA++ Sbjct: 155 RTNNLKTNPKELAAKLSEEGIETSGVRNYPEALELKERANVFKTKAFQDGLFEVQDANSQ 214 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 +L + V+D CA GGKT L + + ++ ALD+ +L++L+ R Sbjct: 215 RVAELLDVKPGMRVVDTCAGAGGKTLHLAALMENKGQIIALDIYGNKLKELKRRAKRAGA 274 Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D+ K D VL+DAPCS G + R+PD W D + K Q + Sbjct: 275 HNVETRSIDSTKVIKKLYNSADRVLIDAPCSGLGVLSRNPDAKWKLQPDFLEKIKNTQLE 334 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + +K GG +V++ CS+ ++E+ VQK L++ +K + Sbjct: 335 ILEKYSRILKEGGKMVYATCSILPSENEKQVQKFLKTESGK---------DFKLLREKKL 385 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS E SG DGF+ L++ Sbjct: 386 LSSE-----------------SGYDGFYMALLQK 402 >gi|303240317|ref|ZP_07326836.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2] gi|302592227|gb|EFL61956.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2] Length = 471 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 89/483 (18%), Positives = 181/483 (37%), Gaps = 60/483 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R ++ +L+ + + +L + L D+I + ++V TLR Sbjct: 5 KKELRIREIALEILNDITENGSNSNLVLSNYFNKY---TLDINDEIFITSLVLGTLRLKV 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV---------------------AD 100 I ++ V + + +LR+ V + Y DV Sbjct: 62 SIQYAIE-VPKKIAKKISPCIMNILRLGVYEHFYGDVIPNPDESFTSYTGNEPYRIEKPK 120 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI-------SIIPEWFK 153 ++ V A++ R A +V ++L R+ + + P Sbjct: 121 CKYINEYVRIAEKC-GQRSGALVVEAVLSRLCGLLWQYFNDRSFEAELLSSKYSFPIHLV 179 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVK---------FDIETWAHKLNAVMLPTGGIR 204 ++ N YG + + +P + + D+ T Sbjct: 180 DKWLNNYGSDFTEDLLKKLNTPAKLCIRPNSLKISKNELMDVLINEEIDFEEGFITDEAL 239 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP-GGKTAQL---I 260 L + + +L F +G + VQD S+ + ++ + +VL++C G KT + Sbjct: 240 LINSTQPLDTLESFKKGYYQVQDESSILVSKILNPRSGENVLEVCVGTQGDKTTHCAQLM 299 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--FDYCPKKLFDAVLVDAPCSS 318 + K+ +D++ ++L R N R D++E D ++ +FD VLV AP Sbjct: 300 NNIGKILTVDINPQKLCLTRQNCCRFGATIVDLMEYDCLVYNKDWNNVFDKVLVSAPSYE 359 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G IRR+P+ ++ D ++ K Q LL +++K GG++V+ + + +++ + Sbjct: 360 YGIIRRNPEKKYSSDYYNLSKLVDIQSNLLRNSSNYLKCGGVLVYYTNTFEVEENLLSIN 419 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L ++ L + + D +G+++I P+ MDG F + Sbjct: 420 CFLENNK-DFVLDEIVEVDTRKFDQPPQ---QGFLQIFPNACL--------MDGCFIAKM 467 Query: 439 RRL 441 RR Sbjct: 468 RRK 470 >gi|254172289|ref|ZP_04878965.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] gi|214034185|gb|EEB75011.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] Length = 443 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 88/410 (21%), Positives = 165/410 (40%), Gaps = 36/410 (8%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I R L ID V++ ++ S L+ LRV+V ++ + + Sbjct: 48 LTGIFYSIQRRLGLIDEVIEELVGVSPLILDPWLRATLRVAV-EVAVFRNPNEKTLQHLK 106 Query: 109 EQAKRDKENRH-----FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 AK H + + + + +R+ + PEWF + E Sbjct: 107 GLAKFLSGKTHPYVGYYYYELLPRIINYVPKLDSEEKRLKWEYLFPEWFIAK-MRGLLGE 165 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL-------P 216 + A L + L V + N + E E+++ + Sbjct: 166 EAEELLKALNETLPVSLRVNRLKASVEDVENYLKRKNLRFERSERVETVIRVLDPFNPGK 225 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 +G+ Q+ ++ + + +V+DL AAPGGKTA + + + K+ A D+ Sbjct: 226 LMEKGLALPQEEASVVASLILSPEPGETVVDLAAAPGGKTAHMAELMGNEGKIYAFDIDS 285 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R++++R L + ++ ++D +++ D VL+DAPC+S GTI ++P++ W Sbjct: 286 ERIKRMRQILRWAGVEIAEVRKLDGRKAPEVLGEEIADRVLLDAPCTSDGTIAKNPELRW 345 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +I K Q++L+ +KPGG +++S CS+ +++EEVV+ L L Sbjct: 346 RLREKNIPKVVALQKELIESAWRLLKPGGRLLYSTCSMLPEENEEVVRWFLSRH-DDARL 404 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 VPL+ Y + G +R P GFF + + Sbjct: 405 VPLSGPYDEGFLP-------GTMRAWPH--------RHKTIGFFYALIEK 439 >gi|91976745|ref|YP_569404.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5] gi|91683201|gb|ABE39503.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5] Length = 434 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 101/459 (22%), Positives = 158/459 (34%), Gaps = 47/459 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L++ + +RI L + D+ + +V LR Sbjct: 1 MTP--AARLSAAIDLIATIDGQRIPAAKALKEWGTAHRYAG--SGDRAAIAGLVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D S + +L+V A R Sbjct: 57 RASSAFIMDDDSARS------RVLGMLKV-------------ERGMTPDAIAALCDGGRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + ++ + PEW +G +RV + A S +D Sbjct: 98 SPQPLSDAEHAALSGRTLDGAPPHVAGDYPEWLDGAFAEMFGDDRVAEAT-AMASRAPLD 156 Query: 180 LTVKFDIETWAH------KLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQD 227 L V L A P + L+ + PG F +G VQD Sbjct: 157 LRVNTLRAKREKVLASLAHLGASETPWSPLGLRIELGADARNPGVQAEQDFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + L V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALLSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ DI D VLVDAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNCDIRAPKGPGDTLSDIHASADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + + VKPGG + + CS+ ++ V+ + P P A Sbjct: 337 KDQAEVLARAATLVKPGGRIAYVTCSVLPAENGGQVKAFVAGHPDFAVTPPAEVAAALWD 396 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ R TP+ L + + +G DGFF LR+ Sbjct: 397 KAEDFLAAT---RTTPEGLL-MTPLRTGTDGFFVSVLRK 431 >gi|306821088|ref|ZP_07454704.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550781|gb|EFM38756.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 436 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 90/463 (19%), Positives = 194/463 (41%), Gaps = 61/463 (13%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++ +++ V + L++ + S L ++ + + L + +D Sbjct: 1 MNLRNITYNIIFDVKHNKKYSNILINEVFTKSK---LKDEEKNFITYLSYGVLGNIYFLD 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123 + S + + +L +++ ++++++ +YA V+ +V K+ + Sbjct: 58 YFIRKYSDISFSKISNKAKVILEMALFELIFMNSSQNYATVNESVALCKKV--DFRAKNF 115 Query: 124 VNSILRRVSREKIELLQRI------------AGISIIPEWFKERLENFYGKERVLAISDA 171 VN++LR++S L+ + I ++ +RL YG + + + Sbjct: 116 VNAVLRKISSSNPSNLRNYKFDDIKDKSERLSVKFSISKYISDRLIENYGFDFAYELMLS 175 Query: 172 CISPLYIDLT---VKFDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGV 222 I + +K D T+ + L+ L I + ++I +L + +G+ Sbjct: 176 MSKTPEIFIRGNLIKTDFNTFKNLLDENKLCYEIIDEKNMIFSLKNLKNIANLNIYRDGL 235 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL 279 +QD S+ + V G N +VLD+CAAPGGK+ + + + + ++D+S+ +L+ L Sbjct: 236 ISIQDYSSMLCVIASGVKENQTVLDICAAPGGKSIFMSQIMKNKGSILSMDISENKLKLL 295 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 RL + DA Y K+ FD VL D PCS G +RR P++ + ++ D+I Sbjct: 296 DEQCKRLGIDIITTKVNDATIYDESYKEKFDVVLADVPCSGIGILRRKPEIRY-KNADEI 354 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q+ +L +VK G +++S C+L K++++ +++ ++++ Sbjct: 355 ESLPEIQKTILENSSKYVKESGKLIYSTCTLGKEENQNIIENFIKNNTDFKI-------- 406 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGF+ + R Sbjct: 407 --------------------SYQKEYYPNIDNTDGFYVCVMDR 429 >gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548] Length = 430 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 103/455 (22%), Positives = 185/455 (40%), Gaps = 55/455 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + L ++ + ++ ++ L ID ++ Sbjct: 5 ELILNSLVRIICEDKKSNEEINYLEKRVGNL-------PYATKVIYGVLENKIYIDYMIG 57 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + L + ++ +L + + I +L+ DYA VD VE KR +NR + VN+IL Sbjct: 58 KLSKIKLKKIHKNVLTILEIGIYNIHFLETKDYATVDKLVELTKR--KNRRSSGFVNAIL 115 Query: 129 RRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 R R++ E+ + + +PE + + YG + + + + Sbjct: 116 RNFIRDEKEIAKIKISDDIKSLSVRYSMPEEITRYIFDNYGMDYTKDFLRYSNNEAVLSI 175 Query: 181 TVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231 + D + KL A + L + P +V+ F EG++ +Q ++ Sbjct: 176 RINRLKTDKDNLIKKLKAKGFEIEVSKISENALLVKNPSGLVATSEFKEGLFTIQQEASM 235 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 V++ + +LDLCAAPG KT+ + K+ A D+SK +L +R N++RL L Sbjct: 236 KTVEVLDPQKDSKILDLCAAPGTKTSYLAEYTRNSGKIIANDISKNKLNLIRENIERLGL 295 Query: 289 YAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 ++ D + ++ FD VLVDAPCS G + R P++ + R DI A QRK Sbjct: 296 SNIELDSFDASVYRSDFEEKFDYVLVDAPCSGLGVMARKPEIRYNRTISDIKVLAELQRK 355 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L I ++KP GI+V+S C+L ++ + L++ L L K ++ Sbjct: 356 ILANAIRYLKPAGILVYSTCTLGNIENLDN-YNFLKA---DERLTSLEIDGKKYLEFVSF 411 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L DGFF ++ Sbjct: 412 LDK--------------------TDGFFISKFKKK 426 >gi|46198807|ref|YP_004474.1| 16S rRNA m(5)C 967 methyltransferase [Thermus thermophilus HB27] gi|46196430|gb|AAS80847.1| 16S rRNA m(5)C 967 methyltransferase [Thermus thermophilus HB27] Length = 398 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 105/441 (23%), Positives = 179/441 (40%), Gaps = 47/441 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++G R ++ +L V R LLD + + +RD+ +V LR L Sbjct: 1 MRAGTP-RALAVAVLLEVDRGGR-AQLLLDRALRRAPW---PERDRAYATFLVYGALRRL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D +L +L ++ +LR+ + L D+A V VE+AKR Sbjct: 56 RLLDHLLAPLLPRP-EGLPPEVRWILRLGALEWL-EGKPDHARVSPWVEEAKRRY--PGL 111 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 A LVN++LRR++ + R++ +P+W E F+G ++ P + + Sbjct: 112 AGLVNAVLRRLAPREAPECVRLS----LPDWLCEAWRGFFGDVA---FAEGFNEPAPLFV 164 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T +++ + L G F Q+ ++ +L Sbjct: 165 TAYREVDLRPGPVPGSYLWEGPKT------------DFPALGLQPQNPASLFAAKLLEAR 212 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLC G K L GA+V + D++ RR E RL L+ D Sbjct: 213 PGERVLDLCGGAGLKAFYLAAQGAEVVSYDLNPRRQEAGARTARRLGLW-VHYRTQDLTR 271 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 P++ VL+DAPC+ TGT R HP++ + +D + A Q +LL + GG+ Sbjct: 272 PVPERAK-KVLLDAPCTGTGTFRAHPELRYRLSPEDPARMAALQLQLLETAAQATEEGGV 330 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +++ E VV+ L P + + + + P G Sbjct: 331 LVYSVCTLTEEEGEGVVRAFLARHPEFRPEPVQPPFPVLARGLGVYVDPRG--------- 381 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G+DGF+ LR++ Sbjct: 382 --------GLDGFYYAKLRKV 394 >gi|257791459|ref|YP_003182065.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243] gi|257475356|gb|ACV55676.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243] Length = 473 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 64/477 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ARL + ++ V + ++ S LS D+ + + Sbjct: 25 SKASPARLAALDVVRAVRERDAFAQDVIGTRIDRS---DLSSEDRAFATKLALGVVSATG 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D ++D L + K ++ LRVS +I++L +A VD VE + + Sbjct: 82 TLDEIIDRALNAP-SDVKPDVRDALRVSTYEIIFLGKTPHAAVDQGVELVRSF--AMSAS 138 Query: 122 KLVNSILRRVSREKIELLQRIAGI--------SIIPEWFKERLENFYGKERVLAISDACI 173 L N++LR++ + P W +L G + L A Sbjct: 139 GLANAVLRKIVLMRQAFPFGDPMRDPEALARLHAFPLWLARKLIVDLGPQEALDFMRASN 198 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPG--------- 217 + + V E + + + + ++ Sbjct: 199 EQAPLFIAVNAAKTSDEALVKAFDKLDEGLDPVSVDGVSVAGCYRVLDTRALLLPEVKRM 258 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNL-SVLDLCAAPGGKTAQLIVSGAKVTA-------L 269 F++G V DA++ + S+L++ A KT L + L Sbjct: 259 FSQGKILVTDAASQLVAASVLPERKPASLLEVGAGRATKTILLQSDATRAYGSQLVLSTL 318 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHP 326 D + L +R + DA + + FD V +DAPCS GT+RRHP Sbjct: 319 DNHAFKTRLLLERAERYGAEVAEAFTGDALELDAVVGDRAFDEVFIDAPCSGLGTLRRHP 378 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSP 385 ++ W DIV+ A Q +L V PGG + ++ C++ ++++ VV+ L + Sbjct: 379 EIRWRIKPADIVEFARVQLGMLQAAAPHVAPGGALAYATCTVTREENNGVVKAFLESEAG 438 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +L P+N + R+ P D FAV R+ Sbjct: 439 AGFKLAPVNGRSCVAT------------RLAPGSP----------DAHFAVRFERIA 473 >gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus abyssi GE5] gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5] Length = 449 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 92/415 (22%), Positives = 163/415 (39%), Gaps = 42/415 (10%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + I ++ ID + ++ + L+ LRV+V L+ + + Sbjct: 53 LTMIFYDIMKKQGLIDRAIQDIVGVNPLILDPWLRAALRVAVDIFLFHE-PSSQTIKNLR 111 Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFY 160 K + + ++I + + P WF ER+ Sbjct: 112 W--KGSDFISSRTHPYVGMYFWDTIDRIMQYKPNPRNELEELEWKYLAPAWFIERVRKIL 169 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML---------PTGGIRLKELPES 211 G E +I + V + + I + P + Sbjct: 170 GNETEEFFRAVNERQEWISVRVNTLKANVEEVIEELRNDGVEVVRSERVPTILKIKGPYN 229 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268 S F +G VQ+ ++++ + ++DL AAPGGKT L + + K+ A Sbjct: 230 FDSSKAFNKGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYA 289 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRH 325 D+ K R+++L+ ++R+ + I D +++ D VL+DAPC+S+GTI ++ Sbjct: 290 FDIDKTRMKRLKEFVNRMGIKIVKPIIKDGRKAPEILGEEIADRVLLDAPCTSSGTIGKN 349 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 P++ W I + A QR+LL VKPGG+++++ CSL +++EE V+ L + Sbjct: 350 PELRWRLRESKIKEMAQLQRELLESAAKLVKPGGLLLYTTCSLFTEENEENVKWFLNNH- 408 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +LV LNS Y EG +R P GFF LR+ Sbjct: 409 QEFKLVHLNSPYDPGF-------LEGTMRAWPH--------RHSTIGFFYALLRK 448 >gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758] gi|225208014|gb|EEG90368.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758] Length = 357 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 155/384 (40%), Gaps = 51/384 (13%) Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 K ++ +LR +V QI Y+D V D A + AV A R K ++ VN +LR ++R Sbjct: 1 MKPVIRNILRCAVYQIKYMDQVPDSAACNEAVNLAIR-KGFKNLRGFVNGVLRNIARNID 59 Query: 137 ELLQRI------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IE 187 ++ + +P+W YG+E+ I + + + + E Sbjct: 60 KIAYPENTEEFLSIKYSMPQWIIRMWVRDYGEEKTKYILEGFYKERATTIRINGNATTKE 119 Query: 188 TWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L + L + + ++P F EG + VQDA++ + + G Sbjct: 120 ELIRELTGEGIQVKEHPLLASALLISGYDYLAAIPAFREGKFQVQDAASIMVAEQAGIKE 179 Query: 242 NLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD- 297 +LD+CAAPGGK V A D+++ ++E +R N+ R+ ++ D Sbjct: 180 GDYILDVCAAPGGKALHAAQILNGTGMVEARDLTEMKVELIRENISRMGFENIRAVQQDA 239 Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 FD ++ D ++ D PCS G + + D+ + + + + A QR++L +VK Sbjct: 240 TCFDADSEEKADVLIADLPCSGLGVLAKKTDLKYKMNPETETEVAALQREILDAVCRYVK 299 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 P G +++S C++ + ++EE P E +I Sbjct: 300 PEGTLMYSTCTISRTENEENAGWFAEKHPE--------------------FDLEWEKQIF 339 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + DGF+ R Sbjct: 340 PSDI---------TDGFYIAKFIR 354 >gi|227872150|ref|ZP_03990520.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268] gi|227842008|gb|EEJ52268.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus F0268] Length = 449 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 101/443 (22%), Positives = 181/443 (40%), Gaps = 67/443 (15%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V + + L + D + L R++ + + L ++D V+ L + Sbjct: 56 VFYEGEFIHLALRKLFSD--YPGLGNREKAFLTRSSHGILERYLQLDYVISLYSSVKLKK 113 Query: 78 KKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 K + LR+++ Q+L++D + ++A+VD AV+ K+ K + VN++LR++ EK Sbjct: 114 LKPVVLLSLRIAIYQLLFMDKIPEHAIVDEAVKSIKKRKL-QGLVPFVNAVLRKIVGEKE 172 Query: 137 ELLQRIAGIS-------IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 E+ +++A + +P E YG+ER +A+++A Sbjct: 173 EIKKKLASLPKEDAVSLCLPPDILEVFLKDYGRERTIAMAEAF----------------- 215 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + + +I+ F G +QD S+ + VLD C Sbjct: 216 LQSDGGFYIRNESGEGERVSGNILEEERFRSGAVTIQDFSSQAVGKSLKLKEGALVLDCC 275 Query: 250 AAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 +APGGK + KV A D K +L + N RL L +I DA + + Sbjct: 276 SAPGGKACHIASLLKGSGKVYARDAQKDKLRYIVENQKRLGLENMEIEHWDARVLDERFI 335 Query: 307 F------DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 DAVL DAPCS G I R PD+ + + + QR++L ++VK GG Sbjct: 336 QEGEGILDAVLCDAPCSGLGVIGRKPDIRLHFTKEALEELQSLQREILSTVQAYVKKGGQ 395 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++S CSL +++EE +L++ P + + E ++ P Sbjct: 396 LLYSTCSLSFKENEENRDYILQNFPFTL------------------IKEEKFM---PGKP 434 Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443 DGF+ +R + Sbjct: 435 ---------SDGFYLALFQRKAE 448 >gi|146340153|ref|YP_001205201.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium sp. ORS278] gi|146192959|emb|CAL76966.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium sp. ORS278] Length = 432 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 99/464 (21%), Positives = 162/464 (34%), Gaps = 57/464 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ + +R L F D+ + +V LR Sbjct: 1 MTP--AARLSAAIDIIETIEAERAPAAKALKDWGTSHRFAG--AGDRAAIAGLVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 V++ + +L++ LDV A NR Sbjct: 57 RASSAYVMENDTAR------ARVLGMLKL----ERGLDVPT---------IAAMCDGNRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + R + P+W L +G +RV + A S +D Sbjct: 98 APSPLTAQEERALASRTTEGAPPPVSGDYPDWLDPYLAAVFGDDRVAEAT-AMASRAPLD 156 Query: 180 LTVKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQD 227 L V L AV P + L+ + PG F +G VQD Sbjct: 157 LRVNALKAKREKVQASLKHLGAVPTPWSPLGLRITLGADARNPGVHAEEDFIKGAIEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALFTAAKPGEQVIDLCAGAGGKTLALAAMMGGKGRLIATDADKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ +I K D V++DAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNAEIRTPKGDADPLADIKSSADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW--- 398 Q ++L + VKPGG + + CS+ + ++ + V+ + P +A Sbjct: 337 KDQAEVLERAAGLVKPGGRIAYITCSVLQPENGDQVRAFVARHKEFAVQPPDQTATVLWD 396 Query: 399 --KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A +PEGW+ + +G DGFF L++ Sbjct: 397 KSEPFAEAALKTPEGWL---------MTPRRTGTDGFFVSVLKK 431 >gi|240849848|ref|YP_002971236.1| SUN family protein [Bartonella grahamii as4aup] gi|240266971|gb|ACS50559.1| SUN family protein [Bartonella grahamii as4aup] Length = 428 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 91/450 (20%), Positives = 159/450 (35%), Gaps = 47/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + K + L F D+ + IV LR + ++ Sbjct: 8 QAAIDVLKEIEMKHRPVGEALKDWGLSHRFAG--AGDRAAIGTIVYDVLRRRYSLQWRME 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + LL + +EQ + FA + Sbjct: 66 SD-----DIRDIVFGALLDSG---------------KMTLEQIDSELAEDRFAPQLLGAK 105 Query: 129 RRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 +R S + +L+ I IP+W + L +G + + + A + +DL V Sbjct: 106 QRKSWQGQQLVDAPDYIRGDIPQWCQAHLRPLFG-DNWITEAAALATRPSLDLRVNNLKA 164 Query: 185 DIETWAHKLNAVMLPTGGIR----------LKELPESIVSLPGFAEGVWWVQDASASIPV 234 E +L L + ++ P F +G + +QD + I Sbjct: 165 TPEKVLKELAKTKLKSLPWFGQALRIAPIEKFNRHPNVQVEPAFQKGHFEIQDLGSQIVA 224 Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L ++ VLD CA GGKT A + + ++ A D K RL + L R + Sbjct: 225 HLVEARESMQVLDYCAGAGGKTLALASDMNNRGQIYAYDSDKARLAPIFDRLRRAGVRNV 284 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D VL+DAPCS TGT RR PD W + + + QR +L + Sbjct: 285 QTRVQREELKPLTGQMDRVLLDAPCSGTGTWRRRPDAKWRLTLEQVKQRQTEQRSILNEA 344 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 I+++KP G +V+ CSL ++EE + + L+ P++ + Sbjct: 345 IAYLKPNGRLVYITCSLFTDENEEQISRFLQQHSHFA---PIDMPALWQKHFSFFPVQP- 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + ++ DGFF L++ Sbjct: 401 ---VFSNYGLTLSPATTQTDGFFLSVLQKK 427 >gi|330826252|ref|YP_004389555.1| Fmu (Sun) domain-containing protein [Alicycliphilus denitrificans K601] gi|329311624|gb|AEB86039.1| Fmu (Sun) domain protein [Alicycliphilus denitrificans K601] Length = 439 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 88/454 (19%), Positives = 154/454 (33%), Gaps = 45/454 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ + ++ + D L R++ + LR P + + Sbjct: 9 ACAELVRLTLTFEHPADAVVSRYFRDHR--ELGPRERATLAETAYAVLRRKPLFEQLARS 66 Query: 70 VLISSLPRKKYSLQQLLRVSVA-QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++L + A Q+ + +++ Sbjct: 67 -------GSGPKERRLAILGFASQLDEQARRADPSARRGPRDFLKSALTAQEKDWLDACD 119 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 E +E +P+W L + A++ + +DL V Sbjct: 120 GVREDELLEPQ-----RHNLPQWLAAPL-KAQLGDEFWALAASLQEQAPLDLRVNTLQAK 173 Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E +L + + ++ L FA G VQD + + L Sbjct: 174 REDMRKELAQAGVQAAPTPYSPWGLRVQGKPALSRLDAFARGALEVQDEGSQLLALLLDA 233 Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292 V+D CA GGKT + + + ++ A DVS RL+ L+ L R L Sbjct: 234 KRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVHPAAL 293 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D D VLVDAPCS GT+RR+PD+ W + + + A Q +L Sbjct: 294 AHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQGPQAVQELAAKQTAILESAA 353 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411 VK GG +V++ CS+ +++E + + + P L ++ A L G Sbjct: 354 RLVKSGGRLVYATCSMLPEENEAIAEAFGAAHPDFAPLAAGELLAQLKVEQAAGLCSGGD 413 Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R+ P DGFFA ++ Sbjct: 414 DGMRYLRLWPH--------RHQTDGFFAAVWQKK 439 >gi|86142818|ref|ZP_01061257.1| putative sun protein [Leeuwenhoekiella blandensis MED217] gi|85830850|gb|EAQ49308.1| putative sun protein [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 85/457 (18%), Positives = 158/457 (34%), Gaps = 67/457 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N L + + ++ + RD+ + +R+ Sbjct: 1 MRLHRNLVFAVIDGLIEIFNEGGYADKVIAKQLKRDKRWG--SRDRSFIAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + D + RK R+ V R + + Sbjct: 59 RLYAEIAD--VKEPFERKDLW-----RLFA-----------------VWCTLRGIKLPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + + RR+ EL +P+W + L ++ A A + L Sbjct: 95 PQFEETPTRRIKGRFDELSNTRKFRESVPDWL-DELGQQELGDKWDAELAALNKQAPVVL 153 Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLK------ELPESIVSLPGFAEGVWWVQDASAS 231 V DI L T I+ + ++ + F G++ VQDAS+ Sbjct: 154 RVNRLKSDIGALQTALAEEGHETENIKPYKDALQLQERANVFTTEAFKNGLFEVQDASSQ 213 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + V+D CA GGKT + + ++ ALD+ +L++L+ R Sbjct: 214 LVAPYLDVEPGMRVVDTCAGAGGKTLHLAAQMDNKGQLIALDIYGNKLKELKRRARRAGA 273 Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D+ K D VL+DAPC+ G + R+PD W D + K Q+ Sbjct: 274 FNIETRVIDSTKVIKKLHNSADRVLIDAPCTGLGVLSRNPDAKWKLQPDFVEKIQATQQS 333 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L VKPGG +V++ CS+ +++E ++K L++ + Sbjct: 334 ILKDYSKIVKPGGKMVYATCSILPSENQEQIKKFLKT------------------EEGSD 375 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 S E + + SG DGF+ + + + Sbjct: 376 FSIEK--------QKTVLSSESGYDGFYMCLMVKKDK 404 >gi|163867476|ref|YP_001608675.1| SUN-family protein [Bartonella tribocorum CIP 105476] gi|161017122|emb|CAK00680.1| SUN-family protein [Bartonella tribocorum CIP 105476] Length = 428 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 156/449 (34%), Gaps = 45/449 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + L F S D+ + IV LR + ++ Sbjct: 8 QAAIDVLKEIEMRHRPVGEALKDWGLSHRFAGAS--DRAAIGTIVYDVLRRRYSLQWRME 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + LL + + A + E++ Sbjct: 66 S-----VDIRDIVFATLLDTG-----KMTLEQIDNALEGDRFAPQLLEDKQRKSW----- 110 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + + IP+W + L +G ++ A + +DL V Sbjct: 111 ----QRRQLVDAPDYIRGDIPQWCQAHLCPLFGDNWIIEA-AALATRPSLDLRVNNLKAT 165 Query: 186 IETWAHKLNAVMLPTGGIRL----------KELPESIVSLPGFAEGVWWVQDASASIPVQ 235 E +L L + + ++ P F +G + +QD + I Sbjct: 166 PEKVLKELAKTKLQSLPWFRQALRVAPIEKFDRHPNVQVEPAFQKGHFEIQDLGSQIVAH 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L ++ VLD CA GGKT A + + ++ A D K RL + L R + Sbjct: 226 LVEAQESMQVLDYCAGAGGKTLALASDMNNRGQIYAYDSDKARLAPIFDRLRRAGVRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D VL+DAPCS TGT RR PD W + + + QR +L + I Sbjct: 286 TRVQKEELKSLRGQMDRVLLDAPCSGTGTWRRRPDAKWRLTLEQVKQRQTEQRAILNESI 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++KP G +V+ CSL ++EE + L+ + + + + K + Sbjct: 346 EYLKPNGRLVYITCSLFADENEEQISHFLQQH-SHFYPIDMQALWQKHFSFSPVQP---- 400 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + ++ DGFF L++ Sbjct: 401 --VFSNYGLTLSPATTQTDGFFLSVLQKK 427 >gi|124266306|ref|YP_001020310.1| NOL1/NOP2/Sun family protein [Methylibium petroleiphilum PM1] gi|124259081|gb|ABM94075.1| NOL1/NOP2/Sun family protein [Methylibium petroleiphilum PM1] Length = 419 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 95/448 (21%), Positives = 157/448 (35%), Gaps = 54/448 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++S LL V++ ++ + + L R++ + V LR + Sbjct: 9 LASELLRAVLKLDAPADGVVSAYFREHR--SLGHRERHALAETVYAVLRRRLLFQHLAQS 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + ++L+ + Q + +A A+ Sbjct: 67 -------GQGSMERRLVLLG-WQGGDGILQAHASPPEREWLARA---------------- 102 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDI 186 R +P+W L+ G+ A++ + + +DL V + Sbjct: 103 ---RAIDVDTLPEKLRHNLPDWLATPLKGVLGESEFWALAASLNAAAPLDLRVNALQAKR 159 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASASIPVQLFGTL 240 E A L + G I L F G VQD + + L Sbjct: 160 EDVAAALAEAGIEAGATPHSPWGLRIRGKPALNKLELFKRGDVEVQDEGSQLLALLTEAR 219 Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT ++ + ++ A DVS RL+ L+ L R L Sbjct: 220 RGEMVVDFCAGAGGKTLALGAMMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVYPVQIA 279 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + I + Q +L Sbjct: 280 HERDDRIKRLSGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPKAIEELRVKQAAILASAAR 339 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +KPGG +V++ CSL ++E + + P L + A L +G++ Sbjct: 340 LLKPGGRLVYATCSLLASENEAIAEAFSTEHPGFEALAVQPVLECCKVGDAGTLVQDGFL 399 Query: 414 RITPDMLEKIDGVSSGMDGFFAVA-LRR 440 R+ P DGFFA L++ Sbjct: 400 RLWPH--------RHATDGFFAAIWLKK 419 >gi|239833569|ref|ZP_04681897.1| Fmu (Sun) domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239821632|gb|EEQ93201.1| Fmu (Sun) domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 465 Score = 180 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 92/451 (20%), Positives = 149/451 (33%), Gaps = 50/451 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + +L F D+ ++ IV LR I Sbjct: 44 QAAIEVLDQIEAGTRPASDVLKDWGATHRFAG--AGDRAVIGNIVYDALRRKLSIAW--- 98 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 R + L +L +D+A V + A E + Sbjct: 99 --------RMDADDARALAFGA--LLADGGMDIAGIDTVLDGDKFAPETLEQPRRIAWES 148 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 + + IPEW LE +G R + A + +DL V Sbjct: 149 RDIAEAPSHV---------QADIPEWCASSLEELFG-ARWMDEGRALATRPPVDLRVNSL 198 Query: 186 IETWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASI 232 L A+ E++ P F +G + VQD + + Sbjct: 199 KAKPEQTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQL 258 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 259 AALFAGAKPGQQVLDYCAGAGGKTLALAAAMQNSGQIHAYDAERARLSPMHERLQRAGVR 318 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D VL DAPC+ +GT RR PD W + + + QR++L Sbjct: 319 NTQVHGNLDALDPLTGQMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLERRVQDQREVLE 378 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +VK GG + + CSL +++ V + LR + E+ P D Sbjct: 379 SAKHYVKQGGRLAYVTCSLFAEENTRQVARFLRDNADFTEVAPQPLWDAVVADAGDIKP- 437 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+ +S+ DGF+ L+R Sbjct: 438 -----VFPEYGAVFSPLSTDTDGFYVSILQR 463 >gi|194290601|ref|YP_002006508.1| ribosomal RNA small subunit methyltransferase b (rRNA (cytosine-c(5)-)-methyltransferase) (16S rRNA m5c967 methyltransferase) [Cupriavidus taiwanensis LMG 19424] gi|193224436|emb|CAQ70447.1| Ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) [Cupriavidus taiwanensis LMG 19424] Length = 467 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 159/444 (35%), Gaps = 52/444 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL VM ++ + ++A L R++ ++ + LR Sbjct: 58 RLLGKVMLFARPADAVVSYYFRENA--KLGHRERGIIAEAIYAVLRRRVEF----AQFAE 111 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S A + L + F + Sbjct: 112 SG---------------------TGAASRRLALLGLAATLGRDALSPFLYPDEAEWLDRL 150 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 + +PEW + L +G+ A+ DA + P +DL V + Sbjct: 151 TTIERSSLAPRVRANLPEWLYDELVRQHGEAFAAALGDAWLRPAPLDLRVNLGKTSREAA 210 Query: 193 --------LNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L A P ++ + + LP F G+ VQD + + L Sbjct: 211 LAELQAAGLGAEPTPMAPAGIRMTGKPALNQLPIFVNGLVEVQDEGSQLLCSLVAPRRGE 270 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296 V+D CA GGKT + S ++ A DVS++RL L+ L R L + E Sbjct: 271 MVVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 330 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PD+ W + + +++ Q +L VK Sbjct: 331 DAKIKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSPESVLELTAKQSAILDSAARLVK 390 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG VV++ CS+ + ++E++V+ L + P LVP L G + Sbjct: 391 GGGRVVYATCSVLEAENEQIVRDFLAAHPN-FRLVPAAEVLADQKIEVPGLPDNGMFALY 449 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFFA L R Sbjct: 450 PHL--------HQTDGFFAAVLER 465 >gi|167646178|ref|YP_001683841.1| Fmu (Sun) domain-containing protein [Caulobacter sp. K31] gi|167348608|gb|ABZ71343.1| Fmu (Sun) domain protein [Caulobacter sp. K31] Length = 423 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 90/452 (19%), Positives = 153/452 (33%), Gaps = 54/452 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ + + + L + + +D+ V + LR + ++ Sbjct: 8 AAAIEVLTEIETRHFPVRMALKRWGESARYAG--SKDRAFVSGLALDALRRKRSLGWIMG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + +L + V L L Sbjct: 66 DDSPRG------VVLGVL---AHDWGWSTERIGEAVAEEH----------GPGALTEDEL 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 +R++ + A +W + L G++R + A +DL + Sbjct: 107 QRLASPRSIDEAPAAIAGDYADWLEPFLNRALGEKRAAEM-AALSQRAPVDLRINLLKTD 165 Query: 189 WA-------------HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + + + S+ +P F++G + VQD + I Sbjct: 166 VERGGKAVALIGAAPAGVLDAAFRIPAPQSSDRTPSVEVVPAFSKGWFEVQDLGSQIAAA 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G + VLD CA GGKT A + + ++ A D RRL R + Sbjct: 226 TAGDIKGKQVLDFCAGGGGKTLALAAAMGNSGQIYAHDSDARRLADTIRRSQRAGVRNLQ 285 Query: 293 IIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 I + D V VDAPC+ +GT RRHPD W D + K Q +L Sbjct: 286 IRSPIEGEPLKGLEGKLDLVFVDAPCTGSGTWRRHPDAKWRLSPDQLAKRQIEQDAVLAD 345 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 FVK GG +++ CSL +++E+ V L P V +A + ++ + Sbjct: 346 AADFVKVGGKLIYVTCSLLVEENEDRVTAFLERHPGFV------AAPITLDGVQEHVTAQ 399 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G +R+TP S+ DGFFA L R Sbjct: 400 GHLRLTP--------RSANTDGFFAAVLERKA 423 >gi|319761896|ref|YP_004125833.1| fmu (sun) domain protein [Alicycliphilus denitrificans BC] gi|317116457|gb|ADU98945.1| Fmu (Sun) domain protein [Alicycliphilus denitrificans BC] Length = 439 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 87/454 (19%), Positives = 152/454 (33%), Gaps = 45/454 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ + ++ + D L R++ + LR P + + Sbjct: 9 ACAELVRLTLTFEHPADAVVSRYFRDHR--ALGPRERATLAETAYAVLRRKPLFEQLARS 66 Query: 70 VLISSLPRKKYSLQQLLRVSVA-QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++L + A Q+ + +++ Sbjct: 67 -------GSGPKERRLAILGFASQLDEQARRADPSARRGPRDFLKSALTAQEKDWLDACD 119 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 E +E +P+W L + A++ + +DL V Sbjct: 120 GVREDELLEPQ-----RHNLPQWLAAPL-KAQLGDEFWALAASLQEQAPLDLRVNTLQAK 173 Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E +L + + ++ L FA G VQD + + L Sbjct: 174 REDMRKELAQAGVQAAPTPYSPWGLRVQGKPALSRLDAFARGALEVQDEGSQLLALLLDA 233 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292 V+D CA GGK + + ++ A DVS RL+ L+ L R L Sbjct: 234 KRGEMVVDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVHPAAL 293 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D D VLVDAPCS GT+RR+PD+ W + + + A Q +L Sbjct: 294 AHERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQGPQAVQELAAKQTAILESAA 353 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411 VK GG +V++ CS+ +++E + + + P L ++ A L G Sbjct: 354 RLVKSGGRLVYATCSMLPEENEAIAEAFGAAHPDFAPLAAGELLAQLKVEQAAGLCSGGD 413 Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R+ P DGFFA ++ Sbjct: 414 DGMRYLRLWPH--------RHQTDGFFAAVWQKK 439 >gi|298290962|ref|YP_003692901.1| Fmu (Sun) domain protein [Starkeya novella DSM 506] gi|296927473|gb|ADH88282.1| Fmu (Sun) domain protein [Starkeya novella DSM 506] Length = 436 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 101/458 (22%), Positives = 159/458 (34%), Gaps = 57/458 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ ++ R +L F D+ + ++V LR Sbjct: 1 MTP--AARLSAAIEVIGTILSDRRPAADVLKDWGRSHRFAG--SGDRAALSSLVYDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++ +L +LR+ LDV A + A Sbjct: 57 RASSAFIMGEETPRALA------LGMLRLG----RGLDVEAVAALCDGSRFAPAPLSGAE 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A+L ++ L PEW L +G+ER A +D Sbjct: 107 TARLTSATLDDAPAHV---------RGDYPEWLDASLAAVFGEERAA-EGAALAERAPLD 156 Query: 180 LTVKF------DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQD 227 L V E LN V + L+ E + + P + +G+ +QD Sbjct: 157 LRVNSLKGAVDKAEQQLAHLNPVPGQWSPLALRIALEADGKAPPLTAEPAYLKGLVEIQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 + I L VLDLCA GGKT +L + ++ A D RRL + + Sbjct: 217 EGSQIAAILAAPPRGGQVLDLCAGGGGKTLELAALMDGAGQLYAYDDDLRRLAPIHERVQ 276 Query: 285 RLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R + + + D VLVDAPC+ TGT RR+PD W + + Sbjct: 277 RAGAHNVQVRSPRGKADVLADLEGRMDLVLVDAPCTGTGTWRRNPDAKWRMRPGALAERI 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-----SA 396 Q ++L FVKPGG + + CSL +++ V+ P L P + Sbjct: 337 KEQAEILDNAARFVKPGGRLAYITCSLLDEENVAQVRAFTGRHPAFRALPPADTVLALGE 396 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ A PEG + + + DGFF Sbjct: 397 RGIALREAAIDRPEGLL---------LTPRRTRTDGFF 425 >gi|312879344|ref|ZP_07739144.1| Fmu (Sun) domain protein [Aminomonas paucivorans DSM 12260] gi|310782635|gb|EFQ23033.1| Fmu (Sun) domain protein [Aminomonas paucivorans DSM 12260] Length = 438 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 92/452 (20%), Positives = 164/452 (36%), Gaps = 40/452 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + V K + L + ++ ++ L +++ LR ++ Sbjct: 5 EAAFAAWYEVE-KGRFASEALRQILTE-----VAPAERRLAASLLYGALRRQSLWKDLIR 58 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + L + A ++ L AV+ A+ R ++ + L++++L Sbjct: 59 NRCRRPFHQLAPVTRAALILGTAGLVELRHFVPAVLMNALAMRLRAEKAQGDEPLLHAVL 118 Query: 129 RRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 RV+ + +++ A + IP W +G + Y+ Sbjct: 119 HRVTEDAPRKMEQLRNSAELRDQALLFGIPGWAAAHWSREWGTSETRRLLRLSAMKAYLS 178 Query: 180 LTVKFDI-ETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASI 232 L V + L A LPG+ EG S+ Sbjct: 179 LRVDPTRRDELVEALQAAGTRAWASPDLASAVRTASFGFPPGLPGYEEGAVTPMSESSLW 238 Query: 233 PVQLFGTLNNLSVL-DLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDRLHLY 289 + + + + DLCA G KT L + T A D+S R+ + RL + Sbjct: 239 VGEAAVSSWSGGAVLDLCAGRGVKTGHLATRLPEATLEAWDLSAGRVHAGAREMARLGVA 298 Query: 290 A-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 E DA + P+ +L D PCS +GT RHP+ W + + A Q +LL Sbjct: 299 DRVTFREGDALELEPRTPPSLILADVPCSGSGTWSRHPEAKWRLAAEKLEDYAVLQVRLL 358 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + V PGG VV+S CSL ++++E+VV ++L VE+ + + Sbjct: 359 ERAADLVLPGGRVVYSTCSLFREENEKVVAELLGRRKDLVEV-----PFPFKNSLFRKGR 413 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P G + I P + +DGF+A L + Sbjct: 414 PYGTV-IWPGLPW--------VDGFYAAVLMK 436 >gi|55980820|ref|YP_144117.1| RNA methyltransferase [Thermus thermophilus HB8] gi|55772233|dbj|BAD70674.1| Sun protein (RNA methyltransferase) [Thermus thermophilus HB8] Length = 398 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 107/441 (24%), Positives = 181/441 (41%), Gaps = 47/441 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++G R ++ +L V R LLD S + +RD+ +V LR L Sbjct: 1 MRAGTP-RALAVAVLLEVDRGGR-AQLLLDRALRRSPW---PERDRAYATFLVYGALRRL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D +L +L ++ +LR+ + L D+A V VE+AKR Sbjct: 56 RLLDHLLAPLLPRP-EGLPPEVRWILRLGALEWL-EGKPDHARVSPWVEEAKRRY--PGL 111 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 A LVN++LRR++ + R++ +P+W E F+G ++ P + + Sbjct: 112 AGLVNAVLRRLAPREAPECVRLS----LPDWLCEAWRGFFGDVA---FAEGFNEPAPLFV 164 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T +++ + L G F+ Q+ ++ +L Sbjct: 165 TAYREVDLRPGPVPGSYLWEGPKT------------DFSALGLQPQNPASLFAAKLLEAR 212 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLC G K L GA+V + D+++RR E RL L+ D Sbjct: 213 PGERVLDLCGGAGLKAFYLAAQGAEVVSYDLNRRRQEAGARTARRLGLW-VHYRTQDLTR 271 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 P++ VL+DAPC+ TGT R HP++ + +D + A Q +LL + GG+ Sbjct: 272 PVPERAK-KVLLDAPCTGTGTFRAHPELRYRLSPEDPARMAALQLQLLETAAQATEEGGV 330 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +++ E VV+ L P + + + + P G Sbjct: 331 LVYSVCTLTEEEGEGVVRAFLARHPEFRPEPVQPPFPVLARGLGVYVDPRG--------- 381 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G+DGF+ LRR+ Sbjct: 382 --------GLDGFYYAKLRRV 394 >gi|294675688|ref|YP_003576303.1| tRNA/rRNA cytosine-C5-methylase [Rhodobacter capsulatus SB 1003] gi|294474508|gb|ADE83896.1| tRNA/rRNA cytosine-C5-methylase [Rhodobacter capsulatus SB 1003] Length = 442 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 106/460 (23%), Positives = 166/460 (36%), Gaps = 46/460 (10%) Query: 1 MKSGMNARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L+S + ++ + A R + D+ + A + LR Sbjct: 1 MTP--AARLQAILDLMSEIDTVPRPADAIVSAWFR--ARRQIGDADRGEIIAQLQELLRH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+ LD R + L +++ + D + + A Sbjct: 57 QARLGWWLDRHGRKDTHRN----RLLAFLALVERRKPD--QLKRLFSGAKYAPSILTEAE 110 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +++ P+W L +G + A ++P +D Sbjct: 111 ATL----VVKLQGLPVDHPAMPEELRLECPDWAAAALRRRFGTD-FETEMAAMLTPPPLD 165 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRL---------KELPESIVSLPGFAEGVWWVQDASA 230 L V T H L A+ + S+ LPG G +QD + Sbjct: 166 LRVNTLKTTREHSLRALRDIGLPAEVSAVAPFGIRVSARLSLAHLPGLKTGEIEIQDEGS 225 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + L V+D CA GGK A + + ++ A DV++ RL++ R Sbjct: 226 QLVALLVDARPGDRVVDFCAGAGGKTLAIAAQMQNKGRIIACDVNEGRLKRCAERARRAG 285 Query: 288 LYAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSAC 342 L + E D + K FD VLVDAPCS TGT RR+PD W + A Sbjct: 286 LQNAETRLLSSETDRWVKRHKAGFDRVLVDAPCSGTGTWRRNPDARWRSPQEQGLDNLAA 345 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L VKPGG +V++ CSL +++E+ V L + P +VPL + Sbjct: 346 LQGRILASAARLVKPGGRLVYATCSLLSEENEDRVAAFLAAHP-EFSVVPLAEVAPQLTG 404 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A PD L + DGFFA L+R Sbjct: 405 SA-----------HPDYL-SLTPARHDTDGFFAAVLQRAA 432 >gi|121595687|ref|YP_987583.1| Fmu (Sun) domain-containing protein [Acidovorax sp. JS42] gi|120607767|gb|ABM43507.1| Fmu (Sun) domain protein [Acidovorax sp. JS42] Length = 425 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 101/454 (22%), Positives = 157/454 (34%), Gaps = 58/454 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ V+ ++ + + L R++ + V LR + L Sbjct: 9 ACAELVRLVLTFEHPADAVVSRYFREHR--GLGPRERATLAETVYNVLR-KKLLFEQLAR 65 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 R R++ IL V EQ K Sbjct: 66 SGAGPKER---------RLA---ILGFHGPRDFVKSALTEQEKSWL-------------- 99 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET- 188 +PEW L+ G+ A++D+ P +DL V E Sbjct: 100 DQCDAVRPEDLLAPHRHNLPEWLVAPLKQQLGESGFWALADSLAQPAPLDLRVNALKEKR 159 Query: 189 -------WAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + +V+ P L+ + + L F G VQD + + L Sbjct: 160 DQVQKELAQAAIKSVVTPYSPWGLRIAGKPALTKLDAFTRGAIEVQDEGSQLLALLLDAK 219 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT + + S ++ A DVS RLE L+ L R L Sbjct: 220 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLEALKPRLARSGLSNVHPAAIA 279 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + + + + A Q +L Sbjct: 280 HERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPEALRELAGKQTAILESAAR 339 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408 VKPGG +V++ CS+ Q++E + + + + A L S Sbjct: 340 LVKPGGRLVYATCSVLPQENEAIAEAFGAAHADFEPQDAGALLTQLKVPDAARLCHGGAS 399 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G++R+ P + DGFFA R Sbjct: 400 GTGYLRLWPHL--------HQTDGFFAAVWTRRA 425 >gi|326318095|ref|YP_004235767.1| Fmu (Sun) domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374931|gb|ADX47200.1| Fmu (Sun) domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 424 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 90/453 (19%), Positives = 154/453 (33%), Gaps = 59/453 (13%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ ++ ++ + D L R++ + LR + + Sbjct: 9 ACAELVRLTLQFEHPADAVVSRYFRDHR--SLGPRERATLAETAYTVLRKKLLFEQLARS 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++L + + A+ A++ ++ Sbjct: 67 -------GSGPRERRLAILGFH-------GPRDFLKSALSDAEKSWLDQ----------- 101 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDI 186 +PEW + L G E A++D+ P +DL V Sbjct: 102 --CDAVPAADLLEPHRHNLPEWLVQPLRRQVG-EGFWALADSLAQPAPLDLRVNDLNAKR 158 Query: 187 ETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +L + E ++ L F G VQD + + L Sbjct: 159 ADVQKELAKAGIPAVPTPYSPWGLRVEGKPALTKLDAFVRGAVEVQDEGSQLLALLLQPR 218 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT + + S ++ A DVS RL+ L+ L R L Sbjct: 219 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIA 278 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + + + Q +L Sbjct: 279 HERDERIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQAVQELVAKQTAILQSAAR 338 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408 +KPGG +V++ CS+ +++E + + + V ++ A L S Sbjct: 339 LLKPGGRLVYATCSILPEENEGIAEAFSAAHSDFVAEDVGALLEQLKVEGAAGLCSGGAS 398 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++R+ P + DGFFA R Sbjct: 399 GTGYLRLWPHL--------HQTDGFFAAVWTRK 423 >gi|222111895|ref|YP_002554159.1| fmu (sun) domain-containing protein [Acidovorax ebreus TPSY] gi|221731339|gb|ACM34159.1| Fmu (Sun) domain protein [Acidovorax ebreus TPSY] Length = 425 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 101/454 (22%), Positives = 157/454 (34%), Gaps = 58/454 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ V+ ++ + + L R++ + V LR + L Sbjct: 9 ACAELVRLVLTFEHPADAVVSRYFREHR--GLGPRERATLAETVYNVLR-KKLLFEQLAR 65 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 R R++ IL V EQ K Sbjct: 66 SGAGPKER---------RLA---ILGFHGPRDFVKSALTEQEKSWL-------------- 99 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET- 188 +PEW L+ G+ A++D+ P +DL V E Sbjct: 100 DQCDAVRPEDLLAPHRHNLPEWLVAPLKEQLGESGFWALADSLAQPAPLDLRVNALKEKR 159 Query: 189 -------WAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + +V+ P L+ + + L F G VQD + + L Sbjct: 160 DQVQKELAQAAIKSVVTPYSPWGLRIAGKPALTKLDAFTRGAIEVQDEGSQLLALLLDAK 219 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT + + S ++ A DVS RLE L+ L R L Sbjct: 220 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLEALKPRLARSGLSNVHPAAIA 279 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + + + + A Q +L Sbjct: 280 HERDERVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPEALRELAGKQTAILESAAR 339 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408 VKPGG +V++ CS+ Q++E + + + + A L S Sbjct: 340 LVKPGGRLVYATCSVLPQENEAIAEAFGAAHADFEPQDAGALLTQLKVPDAARLCHGGAS 399 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G++R+ P + DGFFA R Sbjct: 400 GTGYLRLWPHL--------HQTDGFFAAVWTRRA 425 >gi|296534245|ref|ZP_06896729.1| RsmB/NOP family methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296265432|gb|EFH11573.1| RsmB/NOP family methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 446 Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 99/458 (21%), Positives = 161/458 (35%), Gaps = 36/458 (7%) Query: 1 MKSGMNARLVS-SHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M AR+ + LL V R + + + + + D+ V LR Sbjct: 7 MTPS--ARIAATVALLDAVASAPRRPADATANAFFRERRY--IGSGDRRAVAERAWGILR 62 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 R+D + + + PR LL ++ Q+L ++ V + + Sbjct: 63 QRLRLDWHIARLGLPPTPR-------LLVMA--QLLLVEGWTRDGVLQGFPGGRFNAGPP 113 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + +I + +P W E + + A + Sbjct: 114 D-PGEMAAISAWAGAKLTPPEMPEGIALNLPAWALE-GYRARFGAELPQAAAAMDQAAPL 171 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDAS 229 DL E L A +P + I++ F +G+ +QD Sbjct: 172 DLRANLLRGTREQAMAALAAEGIPAEPMAYSPWGLRIPDRRPILASKAFTDGLIEIQDEG 231 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + L G + V D CA GK A ++ + ++TA DVS RLE L R Sbjct: 232 SQLIALLTGARPGMRVADYCAGAAGKTLAVAAMMGNRGRITACDVSATRLEGAVKRLRRA 291 Query: 287 HLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + D + FD VLVDAPC+ GT RR+PD D+ + Sbjct: 292 GVDNAERHLLEPGDRWVKRRAGQFDCVLVDAPCTGAGTWRRNPDARLRTTARDLEELVTK 351 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR +L V+PGG +V++ CS+ ++ VQ L E+ PL A+ ++ Sbjct: 352 QRDILDHVAQLVRPGGRLVYATCSVLPEEDGMQVQGFLSRH-ADYEVAPLAEAWAEARAG 410 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ S G DGFFA LRR Sbjct: 411 QSLPEAPPPCP---GPWMELAPHSHGTDGFFAAVLRRK 445 >gi|120612086|ref|YP_971764.1| Fmu (Sun) domain-containing protein [Acidovorax citrulli AAC00-1] gi|120590550|gb|ABM33990.1| Fmu (Sun) domain protein [Acidovorax citrulli AAC00-1] Length = 424 Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 89/453 (19%), Positives = 155/453 (34%), Gaps = 59/453 (13%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ ++ ++ + D L R++ + LR + + Sbjct: 9 ACAELVRLTLQFEHPADAVVSRYFRDHR--SLGPRERATLAETAYTVLRKKLLFEQLARS 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++L + + A+ A++ ++ Sbjct: 67 -------GSGPRERRLAILGFH-------GPRDFLKSALSDAEKSWLDQ----------- 101 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDI 186 +P+W + L G E A++D+ P +DL V Sbjct: 102 --CDAVPPSDLLEPHRHNLPDWLVQPLRRQVG-EGFWALADSLAQPAPLDLRVNDLNARR 158 Query: 187 ETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +L + E ++ + FA G VQD + + L Sbjct: 159 ADVQKELAKAGIPAVPTPYSPWGLRVEGKPALTKVDAFARGAVEVQDEGSQLLALLLQPR 218 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT + + S ++ A DVS RL+ L+ L R L Sbjct: 219 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIA 278 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VLVDAPCS GT+RR+PD+ W + + + Q +L Sbjct: 279 HERDERIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQAVQELVAKQTAILQSAAR 338 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----S 408 +KPGG +V++ CS+ +++E + + + V ++ A L S Sbjct: 339 LLKPGGRLVYATCSILPEENEGIAEAFSAAHSDFVAEDVGTLLEQLKVEGAAGLCSGGAS 398 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G++R+ P + DGFFA R Sbjct: 399 GTGYLRLWPHL--------HQTDGFFAAVWTRK 423 >gi|118589176|ref|ZP_01546583.1| sun protein, putative [Stappia aggregata IAM 12614] gi|118438505|gb|EAV45139.1| sun protein, putative [Stappia aggregata IAM 12614] Length = 430 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 157/459 (34%), Gaps = 50/459 (10%) Query: 1 MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK G RL ++ +L+ V + + L F D+ ++ +V LR Sbjct: 1 MKDGG--RLAAAIEVLTEVETRHRPVQLALKDWGAAHRFAG--SGDRTVIGNLVFDALRN 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + A + + ++ + + +++ H Sbjct: 57 KASLGARMKDNSAR-----------AVVLATYCLGWGKG--------LEALTDILEKDHH 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--Y 177 + ++ + + + +PEW E +G+ V Sbjct: 98 APEALSDAEIACLTTAEDHAPSLHEQADVPEWLWPHFETAFGENAVEEGQALATRAPVDM 157 Query: 178 IDLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAEGVWWVQD 227 T+K D + +L + + G+ +G + +QD Sbjct: 158 RTNTLKADRDKVLKRLAHTGAQPTPLSPVGARIEAKPDLGRMPHVQAEEGYRKGWFELQD 217 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ + L VLD CA GGKT A + + ++ A D + RL + L Sbjct: 218 EASQLAAHLAQAKPGEQVLDFCAGGGGKTLALAAAMQNKGQLYAYDADRLRLAPIHERLQ 277 Query: 285 RLHLYAEDIIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 R + + + + D V +DAPC+ TG RR PD W + Sbjct: 278 RAGVRNIQVKDPASSSLDALIGQMDLVFIDAPCTGTGVWRRRPDSKWKLAEKALQDRIDD 337 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSI 401 QR++L +VKPGG + ++ CS+ ++++++ L +P V + + Sbjct: 338 QRRVLDTASKYVKPGGRLAYATCSVLREENQDQASWFLEQNPSFQPVSALDIWKKTLPEA 397 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +S G I +TP S+ DGFF R Sbjct: 398 QLPKYVSDRGDILLTP--------ASTQTDGFFIALFHR 428 >gi|332526016|ref|ZP_08402154.1| Fmu (Sun) domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332109859|gb|EGJ10487.1| Fmu (Sun) domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 419 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 93/448 (20%), Positives = 151/448 (33%), Gaps = 55/448 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ LL V+R ++ + L RD+ + LR + + Sbjct: 9 LATELLRSVLRLDQPADAVVSAFFRQHR--ALGARDRHALAETAYNVLRQRLLLAHLAQS 66 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++L + + D + A E + A Sbjct: 67 -------GSGALERRLAILG-----------WQGGDNFLRGALGPHEQQWLA-------- 100 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 +P+W L+ G E + A + +DL V Sbjct: 101 -QVNTVDRTTLADKLRHNLPDWLAGALQTQLG-EEFWPLVQAMDAAAPLDLRVNALKTKR 158 Query: 190 AHKLN--------AVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240 A P L+ + + L F G VQD + + L G Sbjct: 159 DEAAKALAAAGITAEPTPYSPWGLRVDGKPALNKLELFTNGSVEVQDEGSQLLALLTGAK 218 Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----I 293 V+D CA GGKT ++ + ++ A DVS RL+ L+ L R L Sbjct: 219 RGEMVVDFCAGAGGKTLALGAMMRNTGRLYAFDVSGHRLDNLKPRLARSGLSNVYPAQIA 278 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D D VL+DAPCS GT+RR+PD+ W + + + Q+ +L Sbjct: 279 HERDERVKRLAGKIDRVLIDAPCSGLGTLRRNPDLKWRQSPKAVQELQAKQQAILASASR 338 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-IPVELVPLNSAYWKSIDMAMALSPEGW 412 K GG +V++ CSL ++EE+V V L + ++ A L + Sbjct: 339 LPKSGGRLVYATCSLLTAENEEIVAAFDAEHGRDFVRLDAAELLREQGVERADELVQDRC 398 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+ P DGFFA +R Sbjct: 399 LRLWPH--------RHRTDGFFAAVWQR 418 >gi|319406108|emb|CBI79738.1| SUN-family protein [Bartonella sp. AR 15-3] Length = 428 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 74/438 (16%), Positives = 150/438 (34%), Gaps = 25/438 (5%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + L F +S D+ + IV LR + +D Sbjct: 8 QAAIDILQEIETRYRPASEALKDWGLSHRFAGVS--DRAAIGTIVYDVLRRRYSLQWRMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +++ ++ ++ + + + A + + L Sbjct: 66 S----------NNIRDVVFGTLFDSGMVTIEQVDKILEGDRYAPQLLAPQQRKAWQQRQL 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185 + + + P + ++ + ++ + + Sbjct: 116 VNAPDYIRADIPQWCQAHLYPLFTANWIKEAAALATRPPLDLRVNSLKATPKKVIKALEK 175 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + L I E ++ + P F +G + +QD + + L + + Sbjct: 176 TKVKSFSWFQQALRIEPIEKFERHPNVQAEPAFQKGYFEIQDLGSQLVSYLIEAKAGMQL 235 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT A + + ++ A D +K RL + L R +Y Sbjct: 236 LDYCAGAGGKTLALAASMENRGQIYAYDANKIRLAPIFNRLQRAGIYNVQPRVNKEELKS 295 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 D VL+D PCS TGT RR PD W + + Q +L + + ++KPGG +V Sbjct: 296 LIGQIDIVLLDTPCSGTGTWRRRPDAKWRLTLQKVKQRQEEQFAILNEVLIYIKPGGRLV 355 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL ++EE + + L+ P+N + + + Sbjct: 356 YITCSLFNDENEEQISQFLQKHSNFF---PINMQKLWHRHFSSLI----MQPTFSNYGLT 408 Query: 423 IDGVSSGMDGFFAVALRR 440 + ++ DGFF L++ Sbjct: 409 LSPAATKTDGFFLSILQK 426 >gi|163857123|ref|YP_001631421.1| putative methyltransferase [Bordetella petrii DSM 12804] gi|163260851|emb|CAP43153.1| putative methyltransferase [Bordetella petrii] Length = 556 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 95/448 (21%), Positives = 152/448 (33%), Gaps = 60/448 (13%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L +++ + L L RD+ V V LR L R + Sbjct: 52 RVLGEILQWQYPADAALSHWLRAHP--ALGGRDRAEVAEAVYDVLRHLRRY----RQLSE 105 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S R+++ L + R + Sbjct: 106 SGSGAASR------RLAI---------------LGLAATLGAAALRDGLDPAEDEWLQRV 144 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 A + +P+W ERL + + A P +DL V Sbjct: 145 GRIDPATLPRAVRASMPDWLDERLGRLEDPDA---LMAALNRPAPLDLRVNPLKAERDAA 201 Query: 193 LNAVML------------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 L A++ + S+ P F G VQD + + L G Sbjct: 202 LAALVNSPAARFDPQPTPHSPWGIRLAGRPSVNRWPQFENGSLEVQDEGSQLLALLVGPR 261 Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--- 294 ++D CA GGKT L+ S ++ A DVS RL + + R L + Sbjct: 262 RGEMIIDFCAGAGGKTLLLGALMRSTGRLYAFDVSAARLARAKPRFARSGLSNVVPVAID 321 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D VLVDAPCS GT+RR+PD+ W + + + + Q ++L Sbjct: 322 SENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPEALTELCALQTRILNSAAR 381 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 V PGG +V++ CSL +++ ++ L + P EL+ + P ++ Sbjct: 382 CVAPGGRLVYATCSLLAEENAAQAEQFLAAHP-DFELIDGAALLASRCPDLHLDGP--YV 438 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ PD+ G DGFFA R Sbjct: 439 QLRPDL--------HGTDGFFAAVFERK 458 >gi|328544051|ref|YP_004304160.1| Sun protein (FMU protein), (ribosomal RNA small subunit methyltransferase B, rRNA (cytosine-C(5)-)-methyltransferase) [polymorphum gilvum SL003B-26A1] gi|326413795|gb|ADZ70858.1| Probable Sun protein (FMU protein), (Ribosomal RNA small subunit methyltransferase B, rRNA (Cytosine-C(5)-)-methyltransferase) [Polymorphum gilvum SL003B-26A1] Length = 431 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 88/459 (19%), Positives = 157/459 (34%), Gaps = 48/459 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK G + +L+ V + + L F D+ ++ +V LR Sbjct: 1 MKDGGRL-AAAIEILTEVDERHRPVQEALKDWGNAHRFAG--SGDRTIIGNLVFDALRHK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + ++ ++ + + D E+RH Sbjct: 58 RSLGWRMRSDTPRAI-----------VLATYALSWALGPD--------RLQAVLAEDRHA 98 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YI 178 + V++ + + A + +P+W G V + Sbjct: 99 PEAVSADEAAALQMEPAERAPDAVAADVPDWLWPVFAGSLGAGAVREGQELAARAPIDMR 158 Query: 179 DLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAEGVWWVQDA 228 T+K E A +L + + + + G+ +G + +QD Sbjct: 159 VNTLKATREKVARRLQHIGVRETPLSPVGLRVEPRPGPARLPHVQAEEGYRKGWFELQDE 218 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 ++ + + G VLD CA GGKT A + + ++ A D + RL + L R Sbjct: 219 ASQLVALVAGAQPGRQVLDFCAGGGGKTLALAARMENRGQIYAFDSDRIRLAPIHERLAR 278 Query: 286 LHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + D V VDAPC+ TG RR PD W + + Q Sbjct: 279 AGARNVQVRPPHEGALDDLAGHMDLVFVDAPCTGTGVWRRRPDSKWRLTERALAERVEDQ 338 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--AYWKSID 402 ++L FV+PGG++ + CS+ ++ + V L + L + A Sbjct: 339 ARVLEAAARFVRPGGLLAYVTCSVLVPENRQQVAGFLSTHCDFETLSAAEAWTAALPGAP 398 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +SPEG + +TP ++G DGFF LRR Sbjct: 399 LPAHVSPEGHLTLTP--------ATTGTDGFFIALLRRK 429 >gi|319778235|ref|YP_004129148.1| Ribosomal RNA small subunit methyltransferase B [Taylorella equigenitalis MCE9] gi|317108259|gb|ADU91005.1| Ribosomal RNA small subunit methyltransferase B [Taylorella equigenitalis MCE9] Length = 423 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 94/457 (20%), Positives = 167/457 (36%), Gaps = 75/457 (16%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L V++ + +L + + L D+ +V V LR Sbjct: 14 AEVLEEVLKFKYPADSVLSNWFKSNK--KLGHGDRAIVAEAVFDILRN------------ 59 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 LR+ Y + A V A + + V ++L+ Sbjct: 60 --------------LRM------YRNFAQSGVGPENQRLAILGLNSVCSRESVVAMLKEE 99 Query: 132 SREKIELLQRIA-------GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 E E + +I +P+WF ++ E ++ +A +D+ V Sbjct: 100 QAEWFERIYKIDTSTLNDLIKYSVPDWFFNKVSKLPNYE---SLLEALNQKAPLDIRVNP 156 Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQDASAS 231 + ++ + L I F +G VQD + Sbjct: 157 LKASRDEVLQEIKSRGLLDNQEYENTKFSPWGIRIKTNPSINRWDLFIDGKVEVQDEGSQ 216 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 I QL + V+D CA GGKT L+ S ++ ALD S RL K + + R L Sbjct: 217 ILCQLVSPKRSDWVIDFCAGAGGKTLLLGALMHSKGRLYALDTSSNRLGKAKPRIVRSGL 276 Query: 289 YAEDII----EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 +I E D VLVDAPC+ GT+RR+PD+ W + D+ + Q Sbjct: 277 SNVTLIPIKSENAERVKRLHGKADKVLVDAPCTGLGTLRRNPDLKWRQTQKDLSELVELQ 336 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L VK GG +++S CS+ ++++++ + K L+ + + P + + Sbjct: 337 FNILTAASKCVKNGGRLIYSTCSVLEEENQQQINKFLKINTNFKLINPQKVLGDRITGLE 396 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + PD+ G DGFFA + ++ Sbjct: 397 DV---DDMLVLRPDI--------HGTDGFFAAVMEKV 422 >gi|284161464|ref|YP_003400087.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631] gi|284011461|gb|ADB57414.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631] Length = 443 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 98/452 (21%), Positives = 177/452 (39%), Gaps = 33/452 (7%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + +L + ++S + ++ V A V + L ID +L Sbjct: 6 ELVAEVLKVIEETKLSEKEAIKRCLS---GKISDHAIWSSVHAYVFEIEKRLNLIDFILR 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++ + LLRV V ++ + V D V K+ + N A L N++L Sbjct: 63 NC-FREFDKQNTVFKNLLRVGVYEMHFKGVHPALATDSIVRIVKQ-RFNLKMASLANAVL 120 Query: 129 RRVSREKIELLQRI-------AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 RR + E R A PEWF + G++ + + A + + Sbjct: 121 RRAEKFDYERRFRKLGKVKRLALEYWHPEWFVRYAIDMLGEDEAIKLMKANNEKQSVYVR 180 Query: 182 VK---FDIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASI 232 V +IE L + L E+ +++ L +EG + VQD ++ Sbjct: 181 VNELKANIEEVRRYLENSGVEIEETPLPEVFKAVKYEKHPSVLDWHSEGKYVVQDLASCF 240 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + +LDL +APG K + ++ + + A+D S RLE+++ + +L + Sbjct: 241 VSHVLDPQPDEIILDLASAPGLKASHIASMMENKGVIIAVDNSAERLERMKAKMKQLGVK 300 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 D + D VLVD PCSSTG+ R +P V W D + +K+ QRK++ Sbjct: 301 NVVCRLADGCKIKVGDV-DKVLVDPPCSSTGSFRSYPCVKWRFDRELYLKTIDVQRKMIK 359 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +K GGI+V+S CS+ ++EE V + + + + Sbjct: 360 NAFRNLKSGGIMVYSTCSITFDENEENVMFASEFFKVEEVKPVIGVRGIREFRGKVFPFW 419 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +R P + GFF L+++ Sbjct: 420 DKVVRTFPHL--------HDCTGFFISKLKKV 443 >gi|88802791|ref|ZP_01118318.1| putative sun protein [Polaribacter irgensii 23-P] gi|88781649|gb|EAR12827.1| putative sun protein [Polaribacter irgensii 23-P] Length = 405 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 91/459 (19%), Positives = 163/459 (35%), Gaps = 74/459 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + + + + ++ RD+ V + +R+ Sbjct: 1 MRLHRNLTFAVIDSIRDIFNEGVYADKAVEKALKRDKRWG--ARDRKFVAETIYDIVRWN 58 Query: 61 PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + + R + +LR +A + D+ V E Sbjct: 59 RLYAEIAE--VKAPYDRDNIWRLFSVWCILR-GIA------LPDWNQVGDVPE------- 102 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 R++ EL + IP+W E G+E A Sbjct: 103 ------------RKIKGRFDELSRTRKFRESIPDWMDEMCAKELGEELWTKEIAALNVQA 150 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227 + L E KL+A + T + ++ F G + VQD Sbjct: 151 NVILRTNTLNISKEILQKKLHAENISTETVPNHPDALVLPERANVFKTEAFHNGFFEVQD 210 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ + + V+D CA GGKT L + + ++ A+D+ + +L KL+ Sbjct: 211 ASSQLVAAYLDVKPGMKVIDTCAGAGGKTLHLSALMENKGQIIAMDIYESKLRKLKVRAK 270 Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + D+ +D+ K D +L+DAPCS G +RR+PD W + I Sbjct: 271 RNKAHNIDMRVIDSTKPIKKLHGKADRILIDAPCSGLGVLRRNPDSKWKLQPEFIENIKK 330 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+++L Q +KPGG +V++ CS+ +++E VQK L Sbjct: 331 VQQEILQQYAPMLKPGGKMVYATCSVLPSENQEQVQKFL--------------------- 369 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E + T +K+ SG DGF+ + + Sbjct: 370 -----TSEAGKQFTLVSDKKVFAHISGFDGFYMALMEKK 403 >gi|317490607|ref|ZP_07949080.1| NusB family protein [Eggerthella sp. 1_3_56FAA] gi|325831536|ref|ZP_08164790.1| putative ribosomal RNA small subunit methyltransferase B [Eggerthella sp. HGA1] gi|316910309|gb|EFV31945.1| NusB family protein [Eggerthella sp. 1_3_56FAA] gi|325486790|gb|EGC89238.1| putative ribosomal RNA small subunit methyltransferase B [Eggerthella sp. HGA1] Length = 473 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 162/477 (33%), Gaps = 64/477 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ARL + ++ V + ++ S LS D+ + + Sbjct: 25 SKASPARLAALDVVRAVRERDAFAQDVIGTRIDRS---DLSSEDRAFATKLALGVVSSTG 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D ++D L + K ++ LRVS +I++L +A VD VE + + Sbjct: 82 TLDEIIDRALNAP-SDVKPDVRDALRVSAYEIVFLGKTPHAAVDQGVELVRSF--AMSAS 138 Query: 122 KLVNSILRRVSREKIELLQRIAGI--------SIIPEWFKERLENFYGKERVLAISDACI 173 L N++LR++ + P W +L G + L A Sbjct: 139 GLANAVLRKIVLMRQAFPFGDPMRDPEALARLHAFPLWLARKLIADLGPQEALDFMRASN 198 Query: 174 SPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPG--------- 217 + + V E + + + + ++ Sbjct: 199 EQAPLFIAVNAAKTTDEALVKAFDKLDEGLDPVSVDGVDVAGCYRVLDTRALLLPEVKRM 258 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVL-DLCAAPGGKTAQLIVSGAKVTA-------L 269 F++G V DA++ + S L ++ A KT L + L Sbjct: 259 FSQGKILVTDAASQLVAASVLPERKPSSLLEVGAGRATKTILLQSDATRAYGSQLVLSTL 318 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHP 326 D + L +R + + DA + + FD V +DAPCS GT+RRHP Sbjct: 319 DNHAFKTRLLLERAERYGAEVAEALTGDALELDAVVGDRAFDEVFIDAPCSGLGTLRRHP 378 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSP 385 ++ W DI + A Q +L V GG + ++ C++ ++++ VV+ L + Sbjct: 379 EIRWRIKPADIAEFARVQLGMLQSAAPHVALGGTLAYATCTVTREENNGVVKAFLESEAG 438 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +L P+N + R++P D FAV R+ Sbjct: 439 AGFKLAPVNGRSCVAT------------RLSPGS----------SDAHFAVRFERIA 473 >gi|113868995|ref|YP_727484.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16] gi|113527771|emb|CAJ94116.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16] Length = 466 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 99/444 (22%), Positives = 159/444 (35%), Gaps = 52/444 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL VM ++ + +++ L R++ ++ + LR Sbjct: 57 RLLGKVMLFARPADAVVSYYFRENS--KLGHRERGIIAEAIYAVLRRRVEF----AQFAE 110 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + L + F + Sbjct: 111 SGTGATSR---------------------RLALLGLAATLGRDTLTPFLHPEEAEWLDRL 149 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 + +PEW + L +G+ A+ DA + P +DL V + Sbjct: 150 TTIERSSLAPRVRANLPEWLYDELVRGHGEAFAAALGDALLRPAPLDLRVNLAKTSREAA 209 Query: 193 --------LNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L A P ++ + + LP F G+ VQD + + L Sbjct: 210 LAELHAAGLGAEPTPMAPAGIRMAGKPALNQLPIFVNGLVEVQDEGSQLLCNLVAPRRGE 269 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296 V+D CA GGKT + S ++ A DVS++RL L+ L R L + E Sbjct: 270 MVVDFCAGAGGKTLALGAAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 329 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PD+ W + + +++ Q +L VK Sbjct: 330 DAKIKRLAGKADRVLVDAPCSGLGTLRRNPDLKWRQSPESVLELTAKQSAILDSAARLVK 389 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG VV++ CS+ + ++E++V+ L + P LVP + L G + Sbjct: 390 GGGRVVYATCSVLEAENEQIVRDFLAAHPN-FRLVPAAEVLAEQKIEVTGLPDNGMFALY 448 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFFA L R Sbjct: 449 PHL--------HQTDGFFAAVLER 464 >gi|329118891|ref|ZP_08247586.1| ribosomal RNA small subunit methyltransferase B [Neisseria bacilliformis ATCC BAA-1200] gi|327464919|gb|EGF11209.1| ribosomal RNA small subunit methyltransferase B [Neisseria bacilliformis ATCC BAA-1200] Length = 441 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 111/437 (25%), Positives = 186/437 (42%), Gaps = 50/437 (11%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 +L +L+ +A LS ++ ++ I R+L + +L +L + ++ Sbjct: 41 GQNLQDVLERI--RAAHPELSAQENGTLQDIAYGCQRYLGSLKHMLSHMLKKPVDNRELE 98 Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE---- 137 ++ Q+ Y A +AVV+ AVE + ++ + N+ILRR RE+ Sbjct: 99 SLL--LAALYQLHYTRNAPHAVVNEAVEAIAKIGRGQYCS-FANAILRRFLRERDRLAAS 155 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFDIET-----WAH 191 + +P W+ + L N Y K ++ + P + + + A Sbjct: 156 YKKDDVAKYNLPRWWLDYLRNHYPKHWNNIVTAFQLHPPMTLRVNRRHGNAESYLAELAA 215 Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 A E + SLPGF++G+ VQD A + N +LD CAA Sbjct: 216 AGIAAKALDDCAVTLEAAVPVHSLPGFSDGLVSVQDFGAQQAAYILQPRNGERILDACAA 275 Query: 252 PGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLF 307 PGGKT + + +TALD+ + RL+++ NL RL + DA D + + F Sbjct: 276 PGGKTGHILETADCDITALDIDRGRLKRVEDNLARLGFQTASTVCADARDLAAWYDGRPF 335 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DAVL D PC+++G +RR+PD+ W R D +K+A Q LL + VKPGG ++F+ CS Sbjct: 336 DAVLADVPCTASGVVRRNPDIKWLRRPGDALKTARQQESLLDALWTVVKPGGRMLFATCS 395 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L ++++ +Q LR P + P + Sbjct: 396 LFTEENDLQLQNFLRRHADAACAAPQT--------------------LLPTPKQ------ 429 Query: 428 SGMDGFFAVALRRLIQP 444 DGF+ +R+ QP Sbjct: 430 ---DGFYYALIRK--QP 441 >gi|92118056|ref|YP_577785.1| Fmu (Sun) [Nitrobacter hamburgensis X14] gi|91800950|gb|ABE63325.1| Fmu (Sun) [Nitrobacter hamburgensis X14] Length = 433 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 97/462 (20%), Positives = 154/462 (33%), Gaps = 49/462 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ + +R+ L F D+ + +V LR Sbjct: 1 MTP--AARLSAAIEVIEAIDSERVPAAKALKEWGTAHRFAG--SGDRAAISGLVYDVLRR 56 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 ++D L + L A A +R Sbjct: 57 QASSAWIMDAAAPRSRLLGMLKLERGL--------------------DADAIAALCDGSR 96 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 ++ R + PEW L + +G +R + + Sbjct: 97 FAPAPLSEGERAALVSRTVTDAPAHIAGDYPEWLDGYLADVFGDDRAAEAAAMASRAP-L 155 Query: 179 DLTVKFDIETWAH------KLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQ 226 DL V LNA P + L+ + PG F +G VQ Sbjct: 156 DLRVNTLKAKPEKVLGSLRHLNATATPWSPLGLRITLGADARNPGVHAEEDFIKGGIEVQ 215 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + + L G V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 216 DEGSQLAAMLSGAKPGEQVIDLCAGAGGKTLALAAMMQGRGRLIATDRDKRQLAPIHERL 275 Query: 284 DRLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R ++ D+ D + D VL+DAPC+ TGT RR+PD W + Sbjct: 276 SRAGVHNADVRTPKGADDPLSDIRASADLVLIDAPCTGTGTWRRNPDAKWRMRAGALEVR 335 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q + L + + VKPGG + + CS+ ++ E V+K + P +A Sbjct: 336 LKDQIEALDRAAALVKPGGRIAYITCSVLPPENSEQVRKFIGRHSDFTVTPPAQAASVLW 395 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L+ D + +G DGFF L + Sbjct: 396 DKTDEFLAATYQS----DEGLLMTPRRTGTDGFFISVLHKKA 433 >gi|255994461|ref|ZP_05427596.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC 49989] gi|255993174|gb|EEU03263.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC 49989] Length = 461 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 89/494 (18%), Positives = 166/494 (33%), Gaps = 92/494 (18%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++ RL + L + K + LS R+ VR +V TL+ Sbjct: 4 METHDKKRLAAFWALYNIE-KGKYSNVAFEESTK-----GLSAREAAFVRELVFGTLKLN 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++D ++ + R K + LLR+ + Q+ Y+D V DYA V+ + AK+ +N+ Sbjct: 58 IKLDHAMNHLKDKK-ARIKLKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVKNK- 115 Query: 120 FAKLVNSILRRVSREKIE---------LLQRIAGISIIPEWFKERLENFYGKE------- 163 L+N+ILR R++ E ++R++ P WF + N Sbjct: 116 -VGLINAILRGYIRKRQEIEDSINDLSYIERLSVKYSYPLWFVREITNDEANNSCNKKLP 174 Query: 164 ----------------------RVLAISDACISPLYIDLTVKFDI-------ETWAHKLN 194 ++ + + E Sbjct: 175 ANLSVQKAINDRDTADQVPEYGAEESVLQCGNEKAPLCIRTNLKKITGEELVEKINELGI 234 Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + I + +G + VQD S+ + + VLDLC GG Sbjct: 235 EALPGRAEGAINVKGSGIFDTELYKKGYFSVQDESSQ-LAIEALDIKDCKVLDLCCGRGG 293 Query: 255 KTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDII-----EMDAFDYCPKKL 306 KT +V ++D + ++ +L+ RL + Sbjct: 294 KTFAIIEQCKNVEVISMDKYEHKILQLKDEAKRLGHKVNIGVNDLFDENNLDKHCRLYDT 353 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 V++D PC+ +GT+RR P++ + + + QR LL +G + +V+ C Sbjct: 354 IKYVILDVPCTGSGTVRRRPEIKYAGEDTKLADLVKLQRTLLDRGAELMNDEDHLVYMTC 413 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ ++++ + + L+ L + Sbjct: 414 SIFQKENMDNIDAFLKRHSEFKLL----------------------------QYRQYTPE 445 Query: 427 SSGMDGFFAVALRR 440 G DGFF L+R Sbjct: 446 KDGTDGFFFADLKR 459 >gi|284161369|ref|YP_003399992.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] gi|284011366|gb|ADB57319.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] Length = 445 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 97/453 (21%), Positives = 188/453 (41%), Gaps = 46/453 (10%) Query: 14 LLSCVMRKRISLTCLLDLEYGD----SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L+ V+RK + +Y + +L ++ A+ ++ L ID ++ Sbjct: 11 ILTEVLRK---ADEIKPSQYAKRMVFEKYNILGTHIDRILTAVYYKIMKRLGVIDKIIRD 67 Query: 70 VLISSLPRKKYSLQQLLRVSV----AQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L+ LRV++ + Y D V V + + + Sbjct: 68 VVGVHPNILDPWLRSALRVTIEFLVFEKKYTKHLDKERVKKVVADFLSNVTHPYVGMYYF 127 Query: 126 SILRR---VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 R E + ++R+ ++P W+ + E + A I + V Sbjct: 128 ETFERIASYKLEPKDEIERLEFEYLLPAWYIRK-MKELLGEEAEELFKAFNREPMISIRV 186 Query: 183 KFDIETWAHKLNAVMLPTGGIRL---------KELPESIVSLPGFAEGVWWVQDASASIP 233 T ++ + + + E P + +G + VQ+ ++++ Sbjct: 187 NTLKATVKEVIDHLRRQGKEVIVSSVVPTVLKFEGPYDFDKSKLYRKGKFVVQEEASALA 246 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N +V+DLCAAPGGKT + + + + A DV + RL+++ + R + Sbjct: 247 SILLDPKPNETVVDLCAAPGGKTIHMAELMRNRGVIHAFDVDELRLKRMEELIKRCGVKI 306 Query: 291 EDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 I +MDA + + D V++DAPC+S GT+ ++P++ W + I + A Q +L Sbjct: 307 VKIYKMDARKAVDVLGESIADKVMLDAPCTSDGTLMKNPELRWRIREEKIEEIAQLQYEL 366 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L GI +KP G +++ CS+ ++++E+VV++VL+ V+LVPL Sbjct: 367 LNTGIDLLKPKGRILYCTCSIFREENEDVVERVLKER-DDVKLVPL-----------EGY 414 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG++++T + GFF L + Sbjct: 415 YSEGFLKVT----IRAFPHKHNTIGFFYALLEK 443 >gi|153010378|ref|YP_001371592.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151562266|gb|ABS15763.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188] Length = 429 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 96/449 (21%), Positives = 157/449 (34%), Gaps = 46/449 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + +L F D+ ++ IV LR I Sbjct: 8 QAAIEVLDQIEAGTRPASDVLKDWGASHRFAG--AGDRAVIGNIVYDALRRKLSIAW--- 62 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 R + L +L D A +D + FA V Sbjct: 63 --------RMDADDARALAFGA--LLADGGMDIAAID-------AALDGDKFAPEVLEQP 105 Query: 129 RRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RR++ E ++ + A + +PEW LE +G R + A + +DL V Sbjct: 106 RRIAWESRDVTEAPAHVQADVPEWCASSLEELFG-ARWVDEGRALATRPPVDLRVNSLKA 164 Query: 188 TWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPV 234 T L A+ E++ P F +G + VQD + + Sbjct: 165 TPEKTLTALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDGWFEVQDLGSQLAA 224 Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 G VLD CA GGKT A + + ++ A D + RL + L R + Sbjct: 225 LFAGAKPGQQVLDYCAGAGGKTLALAAAMQNSGQIHAYDAERSRLSPMHERLQRAGVRNT 284 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + D VL DAPC+ +GT RR PD W + + + Q+++L Sbjct: 285 QVHGNLDALDPLTGQMDLVLTDAPCTGSGTWRRRPDAKWRLNDQQLERRVQDQKEVLESA 344 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +VKPGG++ + CSL +++ V + L + E+ P D Sbjct: 345 KHYVKPGGLLAYITCSLFAEENTRQVAQFLTGNADFTEVAPKALWDTIVADAGDVKP--- 401 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +S+G DGF+ L+R Sbjct: 402 ---VFSSHGAVFSPLSTGTDGFYVSLLQR 427 >gi|89901952|ref|YP_524423.1| Fmu (Sun) [Rhodoferax ferrireducens T118] gi|89346689|gb|ABD70892.1| Fmu (Sun) [Rhodoferax ferrireducens T118] Length = 429 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 148/446 (33%), Gaps = 65/446 (14%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 ++ ++ + D+ L R++ + V LR D Sbjct: 24 LKFDHPTDAIVAKFFRDNR--GLGPRERATLSGTVYNVLRKKLLFDHFA-------PSGS 74 Query: 79 KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 ++L + + + + ++ Sbjct: 75 GPKERRLAILGFY-----------------------GPGDFLRSALTDQEKNWLDQCEKI 111 Query: 139 LQ---RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHK 192 +PEW + L++ G + ++++ +DL V + Sbjct: 112 NVADLMERHRHNLPEWLVQPLKDQLG-DEFWPLAESLNLGAGLDLRVNALNAKRADVQKE 170 Query: 193 LNAVMLPTGGIRLKELPESIVSLP------GFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 L + I P GF +G + VQD + + L V+ Sbjct: 171 LAQAGIKAVNTPYSPWGLRIAGKPTLNKFDGFIKGAFEVQDEGSQLLAMLLDAKRGEMVV 230 Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAF 299 D CA GGK + S ++ A D S RL+ L+ L R L E D Sbjct: 231 DFCAGAGGKTLAIGACMRSTGRLYAFDTSPHRLDALKPRLARSGLSNVHPAAIAHERDDR 290 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVDAPCS GT+RR+PD+ W + + + A Q +L +KPGG Sbjct: 291 VKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSLGLVAELAVTQAAILQSAARLLKPGG 350 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-----WIR 414 +V++ CS+ Q++E + Q ++P L + A L G ++R Sbjct: 351 RLVYATCSMLVQENEAIAQAFSEANPDFAPLEAGEVLSGLKVADAAKLCSGGETGQRYLR 410 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P DGFFA +R Sbjct: 411 LWPH--------RHHTDGFFAAVWQR 428 >gi|121606520|ref|YP_983849.1| sun protein [Polaromonas naphthalenivorans CJ2] gi|120595489|gb|ABM38928.1| sun protein [Polaromonas naphthalenivorans CJ2] Length = 450 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 126/444 (28%), Positives = 195/444 (43%), Gaps = 47/444 (10%) Query: 25 LTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVLISSLP---RK 78 + +L + G S L D + V+A+ LR+L R +A+ + P Sbjct: 23 ASVVLAVRDGQSMTPALEDVDAQLRPGVQALAFHALRWLGRAEALRQQLAKRPPPPEADA 82 Query: 79 KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 + L S + Y + +VD AVE AKR H A +N LRR RE+ EL Sbjct: 83 LLCVALALACSAEEAPYT---AHTLVDQAVEAAKRSDATLHQASFINGCLRRFLREQGEL 139 Query: 139 L----QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194 + + + P+W+ +R++ + + I A S + L + T A L+ Sbjct: 140 MALTEKSPQAVWNHPQWWIDRVKKDHP-AQWQDILRANNSRAPLILRINERKTTPAQYLH 198 Query: 195 AVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL---- 243 A++ + + SLPGFAEG + VQDA+A + L Sbjct: 199 ALLAMDIGAFPVGEHGVVLTEARPVTSLPGFAEGHFSVQDAAAQLAAPLLLDGLMAAGEG 258 Query: 244 ----SVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEM 296 +LD CAAPGGKTA L+ + VTALD+ RR E++ NL RL L A + Sbjct: 259 SPRLRILDACAAPGGKTAHLLELADCDVTALDIDARRCERIAQNLQRLGLRAHIVVGDAG 318 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D+ +L+D +L+DAPC+++G +RRHPDV W R DI + A Q +LL ++ Sbjct: 319 RPGDWWDGRLYDGILLDAPCTASGIVRRHPDVRWLRRPTDIAQLAQIQARLLATLWPLLQ 378 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+ CS+ + + E+ VQ + L+P A+ P+ +R Sbjct: 379 PGGRLVYCTCSVFRAEGEQQVQAFAARHTDAL-LLPSPGHLLPQGGAGAAVFPDNLMR-- 435 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 DGF+ L + Sbjct: 436 ------------EHDGFYYALLEK 447 >gi|49473837|ref|YP_031879.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse] gi|49239340|emb|CAF25673.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse] Length = 428 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 147/450 (32%), Gaps = 47/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + F S D+ + IV LR + ++ Sbjct: 8 QAAIDILKEIETRHCPAGQAIRAWGLSHRFAGAS--DRAAISTIVYDVLRRRYSLQWRME 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + LL + + A + + L Sbjct: 66 SD-----DMRDVVFGTLLDTG-----KMTIEQIDGELEGDRFAPQLLGPKQRQSWQRRQL 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + + P + + + A + +DL V ++ Sbjct: 116 VDAPDYIRGDIPQWCQAHLHPLFA----------DNWEIEAAALATRPSLDLRVN-SLKA 164 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLP--------------GFAEGVWWVQDASASIPV 234 K+ + T L P+++ P F +G + +QD + I Sbjct: 165 TPEKVLKELAKTKIQFLSWFPQALRIAPIEKFSRHPNIQMELAFQKGHFEIQDLGSQIVA 224 Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L ++ VLD CA GGKT A + + + A D +K RL + L R + Sbjct: 225 HLVEAKESMQVLDYCAGAGGKTLALAASMKNQGHIYAYDSNKVRLASIFDRLQRAGVRNV 284 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D VL+DAPCS TGT RR PD W + + + QR +L + Sbjct: 285 QARAHREELKSLVSQMDRVLLDAPCSGTGTWRRRPDTKWRLTLEQVRQRQVEQRAILNEA 344 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + ++KP G +V+ CSL ++EE + L+ P+N + + Sbjct: 345 MDYLKPNGRLVYITCSLFFGENEEQISLFLKQHSNF---YPINMRTLWQKYFSFSPVQP- 400 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I + ++ DGFF L++ Sbjct: 401 ---IFSHYGLTLSPATTKTDGFFLSVLQKK 427 >gi|149200025|ref|ZP_01877051.1| NOL1/NOP2/sun family putative RNA methylase [Lentisphaera araneosa HTCC2155] gi|149136898|gb|EDM25325.1| NOL1/NOP2/sun family putative RNA methylase [Lentisphaera araneosa HTCC2155] Length = 434 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 162/450 (36%), Gaps = 42/450 (9%) Query: 7 AR---LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + + V R L L + ++ RD+ + + R+ + Sbjct: 11 ARSYSEAIAQIFYEVRESRNPLDQELRRFFRNNKKYG--SRDRRFIAESLYSLFRWFGWV 68 Query: 64 DAVLDFVLISSLPRKKYSLQQL-LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +L + + + + +L LD V Q N Sbjct: 69 QDIL------PISAPDVACENKKFCSGLIAVLCLDNLHIDPVAEHFSQLAGV--NMQGVP 120 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + +R K L+++ ++P+WF E L + E ++ I P++I L Sbjct: 121 KTDLDEKRQWMGKHFGLKQLKNTDLVPDWFVEELPKDFNLEELI-IDLQKRPPMWIRLQG 179 Query: 183 KFDIETWAHKLNAVMLPTGGIRLK-------ELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +L + ++ L F +G + VQD ++ Sbjct: 180 PQNKNNTLRELKERDFDIYPHSIMKKAIKIVNPRVNLYELKSFRDGQFEVQDLASQSLGF 239 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D+CA GGKT A + S +T+ D+ + +L+ L+ R Sbjct: 240 ACQAEGGQRWWDVCAGAGGKTLLLADHMESKGGITSTDIREWKLDDLKKRARRARFSNIT 299 Query: 293 IIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + K+ +D VLVDAPCS TGT RR+PD W+ D + A Q +L + Sbjct: 300 TKNLKKTRSASKKRPYDGVLVDAPCSCTGTWRRNPDARWSSTAKDCEELATIQADILEKS 359 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK G++V++ CS +++EE+V+ L++ P + K G Sbjct: 360 APGVKADGVLVYATCSFSVRENEEIVENFLKTHPDFYLEDFPHPLTLKPTG--------G 411 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +RI+P D FA RR Sbjct: 412 ILRISPS--------PEDCDAMFAARFRRK 433 >gi|222084588|ref|YP_002543117.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] gi|221722036|gb|ACM25192.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Agrobacterium radiobacter K84] Length = 429 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 86/448 (19%), Positives = 152/448 (33%), Gaps = 46/448 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++ Sbjct: 10 AIEVLADIETRKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMGD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 +L + + A A ++ + ++ Sbjct: 67 -----DSPSALAHAVL-----------FRQWGLTPEA--LAAELDGDKFAPEAPSAEALT 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + IPEW + + +G + A +DL + Sbjct: 109 AFAARKLGDAPRHIQGDIPEWVEHSFQQAFGDSWLAEA-QALAERPTLDLRANALKASRD 167 Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237 + A+ ++ + F +G + VQD + I L Sbjct: 168 KAVKALERAGAQASKIARNGIRIPAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD CA GGKT + + + +V A D +RRL + L R + Sbjct: 228 LPQEGDQVLDYCAGGGGKTLAMSAAMHNKGQVHAYDTDRRRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + + FD VLVDAPC+ TGT RR PD W ++ + Q++ L Q F Sbjct: 288 DERNALLALRGKFDKVLVDAPCTGTGTWRRRPDTKWRLTQKNLDERISQQQEALAQAGEF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY-WKSIDMAMALSPEGWI 413 V+PGG++++ CS+ ++E V + ++P + L+S D S +G Sbjct: 348 VRPGGMLLYVTCSVLPDENETQVNRFAANNPEFEVVEALSSWEKLFGNDAPKPRSSDG-- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 + S+ DGFF L+R Sbjct: 406 -----KTITLTPASTDTDGFFFCRLQRK 428 >gi|289524256|ref|ZP_06441110.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502912|gb|EFD24076.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 440 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 178/457 (38%), Gaps = 47/457 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + RK + L+ +L D L + ++ L +V +R +L Sbjct: 5 EAALAIWEE-TRKGLFLSQVLRRFGED-----LPEGERKLASTLVYCAMRRYNLWVEILR 58 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVA-DYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L + + +L + A +L + ++V+ VE K+ +N A LVN++ Sbjct: 59 SFLRRPFETLQAETRDILILGCAGLLEIKHFVPQSLVNAFVEATKK--KNPADAALVNAV 116 Query: 128 LRRVSRE---------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 LR+++ + A +P+W R +G++ + + + Y+ Sbjct: 117 LRKIASDGREKLEELKNSPNQINQALFWGLPQWIARRWMESWGQDLAKKLFVSQLIKPYL 176 Query: 179 --DLTVKFDIETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 L+ + D K + S+ G+ EG+W Q S+ Sbjct: 177 SFRLSPRTDPGEMGEKFFEEGVKSWRSPYFNYVLRSNSFGHPPSMLGYNEGLWTPQTESS 236 Query: 231 SIPVQL----FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLD 284 +L +LD+CA G K ++ VT A D+SK R+ R L Sbjct: 237 IFVSDKVLSLSSSLGKRKILDMCAGRGIKAGHILERAQDVTIEAWDLSKNRVYAGRRELR 296 Query: 285 RLHLYAEDII-EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 RL + I D+ P++ + VL+DAPCS +GT RHP+ W + + Sbjct: 297 RLGVQNRSIWKVGDSLKLAPEEAPEIVLLDAPCSGSGTWGRHPEGKWRLSPGKLSSYSDL 356 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR LL + I V GGIVV+S CS+ ++++E V+ + L S+P +E+ + Sbjct: 357 QRDLLERAIGMVTTGGIVVYSTCSVFREENERVIGEALCSNPDIIEIEIEGGGFPLQRGR 416 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P +DGFF L + Sbjct: 417 PFGYY------LLPGSPW--------VDGFFLCILMK 439 >gi|269120809|ref|YP_003308986.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386] gi|268614687|gb|ACZ09055.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386] Length = 437 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 93/446 (20%), Positives = 186/446 (41%), Gaps = 36/446 (8%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +LL ++ L+ + + +++++ + I++ TL+ L ID +++ Sbjct: 10 NLLDEIIAGGKYSNLQLNYYFSTKGY---NKKEKSFITNIIHTTLKNLIFIDYLIEKNAS 66 Query: 73 SSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + RK ++QLLR+SVAQ +L + +V AVE AK N+H VN ILR + Sbjct: 67 NIKKRK---IKQLLRISVAQFLLNKESDYSGIVFEAVETAKII--NKHQTGFVNVILRNI 121 Query: 132 SREKIE------LLQRIAGISIIPEWFKERLENFYGKERVLAISDA-----CISPLYIDL 180 ++ + ++ + P+W ++ + Y + V + + Sbjct: 122 FQKYDQLVSEIPPTKKYSVELSYPQWIINKIASDYPENYVRILQSYKTKSYLSFRINPRK 181 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + D A K + +L +++ F E + VQDAS+ + V+ Sbjct: 182 FSREDFIKLAGKHESKILFEIENVFYMSNSALLDTKEFKENCFSVQDASSYLAVKALDVQ 241 Query: 241 NNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 ++ VLD C+APGGK + + V A D+ + ++ L+ + + I+ DA Sbjct: 242 DDDIVLDACSAPGGKMSAILQEYNPDLVVASDIHEHKIGMLKEIKKKNNFTNLKIVLNDA 301 Query: 299 FDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FD +L+D PCS G +R+ P+ ++T + DI K Q+ + +K Sbjct: 302 REIGELNEKFDKILLDVPCSGLGVLRKKPEKIYTLENSDIKKLKKIQKAIFDSAYHSLKE 361 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G++++S C+ ++++ ++ P V + S Sbjct: 362 NGVIIYSTCTFTREENTNNIKYFTEKYPDLVIENVIFPDNVFISKDEFGGS--------- 412 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQ 443 ID + +DGF+ R+ + Sbjct: 413 ----FIDYRNKYLDGFYIAKFRKKGK 434 >gi|319951686|ref|YP_004162953.1| fmu (sun) domain protein [Cellulophaga algicola DSM 14237] gi|319420346|gb|ADV47455.1| Fmu (Sun) domain protein [Cellulophaga algicola DSM 14237] Length = 408 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 80/462 (17%), Positives = 158/462 (34%), Gaps = 76/462 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L+ + + ++ RD+ + +R+ Sbjct: 1 MKLHRNLVFAVVDALNLIFNEEEYADKVVQKVLKFDKRWG--ARDRGFIAETTYEIVRYK 58 Query: 61 PRIDAVLDFVLISSLPRKKY----SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + + R ++ +LR + ++ Sbjct: 59 RLYIEIAE--VKAPFSRPNLFRVFAVWAVLR-GI-EL----------------------- 91 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + ++ R++ EL + IP+W E G++R +A Sbjct: 92 -PDWKQIETVPNRKIKGRFDELSKIRKFKESIPDWMDEIGVKSLGEKRWTKELNALNQQA 150 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 + L E L + I ++ F G++ VQD Sbjct: 151 DVILRANTLKTTKEALRANLLENGIDCEPIAGYTDALKLAERGNVFRTDAFQNGMFEVQD 210 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ + + V+D CA GGKT + + + ++ A+D+ + +L++L+ Sbjct: 211 ASSQLVAEFLDVKPGQRVIDTCAGAGGKTLHIAALMENKGQLIAMDIYENKLKELKRRAK 270 Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + +D+ K D +L+DAPC+ G +RR+PD W + + K Sbjct: 271 RNGAFNIEPRVIDSTKVIKKLYGKADRILIDAPCTGLGVLRRNPDAKWKLQPEFLEKIMA 330 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSI 401 Q+++L +KP G +V++ CS+ Q++ E V+ L L+ N Sbjct: 331 TQQEILRSYSKMLKPEGKMVYATCSILPQENNEQVKSFLASEEGRDFRLIKENK------ 384 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I SG DGF+ L ++ + Sbjct: 385 ---------------------IYASESGYDGFYMALLEKIAE 405 >gi|83746246|ref|ZP_00943299.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551] gi|83726996|gb|EAP74121.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551] Length = 464 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 92/446 (20%), Positives = 172/446 (38%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + + L R++ ++ LR Sbjct: 58 KVLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAE 111 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + ++L+ + + Q A + + ++ + +R ++ RV Sbjct: 112 SG---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPSEAEWLDRWAIIDRTALAPRV- 162 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + +P+W + L +G+ A++ A ++P +DL V + E Sbjct: 163 ------------RANLPDWLFDALVVQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAV 210 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL Sbjct: 211 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 270 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGKT + + S ++ ALDVS++RL L L R L +D+ Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEH 330 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 390 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++++VV++ L V + + I + M ++ + Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELY 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 447 PQV--------HQTDGFFAAVLERRA 464 >gi|171464051|ref|YP_001798164.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193589|gb|ACB44550.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 519 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 31/318 (9%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGI 203 +PEW + + G++ ++ + + P +DL + E ++NA+ I Sbjct: 184 NLPEWLWDAFGQYPGEDTREELAKSLMHPALLDLRANTMKTNREELLAQMNALGGRYQAI 243 Query: 204 RLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 P+ ++ + PGF G++ VQD + + L V+D CA GGK Sbjct: 244 PTPYAPDGVRIMGKPALQNTPGFKAGMFEVQDEGSQLLAYLLAPKRGEMVVDFCAGAGGK 303 Query: 256 ---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EMDAFDYCPKKLFD 308 ++ S ++ ALD S+RRL L+ R L + E DA D Sbjct: 304 TLAIGVIMRSTGRLYALDTSERRLANLKPRQARSGLSNVHPVWIDSENDAKIKRLAGKID 363 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS GT+RR+PD+ W + +++ Q +L +KPGG +V++ CSL Sbjct: 364 RVLVDAPCSGMGTLRRNPDLKWRQTQAGVLELNQKQMSILNSAARLLKPGGRLVYATCSL 423 Query: 369 DKQDSEEVVQKVLRSSPIPVELVP----LNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 Q+++ + + L P E+VP L S + K W ++ P + Sbjct: 424 LPQENQAIAEDFLAKHP-QFEVVPAAEVLKSLFPKEKLPLGCSLDNPWWQLWPHI----- 477 Query: 425 GVSSGMDGFFAVALRRLI 442 G DGFF ++ + Sbjct: 478 ---HGTDGFFGAVFQKKV 492 >gi|241668134|ref|ZP_04755712.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876669|ref|ZP_05249379.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842690|gb|EET21104.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 425 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 93/448 (20%), Positives = 187/448 (41%), Gaps = 36/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL ++ + + LS +D+ V+ + R ++ Sbjct: 1 MNTRAIAAKSILDIIDNKHSL-LTIEHKLIEH---NLSDKDKSFVKLLCYEFFRNYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 V L + K + L+ + + QI ++ YA ++ V A ++ + KLV Sbjct: 57 NVASLYLA---EKTKLKAKILVMLGILQIFEINQPHYASINETV-AACKNLKILWAKKLV 112 Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N +LR++ R+ I + +W L+ Y + + ++I L Sbjct: 113 NGVLRQIVRDLEDITPNYTEHKTHDLAQWLSNMLKEQYPVDYQKIAKAVNSKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + L+ + + + F +G + VQD SA + Sbjct: 173 KAKDPQYVIDYFDKNNISYSKTELENCIKLDKAIDVKNNTLFQQGYFSVQDISAQYMGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 NN +LD CAAPGGKT ++ AK+TA+D+ +RLE L+ N+ R+ + Sbjct: 233 INVQNNDIILDACAAPGGKTTHILELAPQAKITAIDIIDKRLELLKENITRIAKNNHVNV 292 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 ++ +++DAPCS+ GT++R+PD+ R ++DI Q ++L + Sbjct: 293 TKHDLTQPLAGQYNKIILDAPCSALGTLKRNPDIKVLRKSEDIKSIQTLQAEILDSLWNN 352 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 + G +++ CS+ Q+++ ++ L E+V + D Sbjct: 353 NLTNNGYLLYITCSILAQENQLQIKNFLSKH-QDAEIVEIKILENYKTDYG--------Y 403 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 +I P DGF+ ++++ Sbjct: 404 QILP--------TEDKGDGFYYCLIKKI 423 >gi|282855986|ref|ZP_06265277.1| Fmu [Pyramidobacter piscolens W5455] gi|282586205|gb|EFB91482.1| Fmu [Pyramidobacter piscolens W5455] Length = 439 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 107/451 (23%), Positives = 176/451 (39%), Gaps = 43/451 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L V + I L + +S D+ L ++ +R L + + + Sbjct: 13 EAAMYLWRQVDKGGIVSESL------RTLGDRVSPPDRTLAASLAYALVRRLSLWEHLRE 66 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV-VDLAVEQAKRDKENRHFAKLVNSI 127 L+ + S++ + + A + L+ AV + +E K + A++VN++ Sbjct: 67 KFLLPRPEKFSQSVRAAVLMGAAGLTELEKFAPAVLISSLIEWTKT--RDPRGARVVNAV 124 Query: 128 LRR---------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 LRR + L + +S +P W ER YG + + + Sbjct: 125 LRRVLEEGPAELQRLRDDDSLDSLCLLSGVPSWVGERWRRDYGPAVGRRLVEQNAGGSSL 184 Query: 179 DLTVKFD-IETWAHKLNAVMLPTGGIRLKELPES-----IVSLPGFAEGVWWVQDASASI 232 L + D L A L + +LPG+ EG + Q S+ + Sbjct: 185 SLRLSPDAPRDLPQLLEAAGQTVEESPLPDGLRLAGTALPSALPGYREGWFTPQSESSIL 244 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLRCNLDRLHLY- 289 +LD+CA G KT Q+ + A D+SK R+ ++RL L Sbjct: 245 VGTEAADFEGARLLDMCAGRGVKTGQIAQLRPDIAVEAWDLSKGRVAAGVREMERLKLSG 304 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + A + P DA+LVDAPCS +GT RRHP+ W +++ + Q +LL Sbjct: 305 RVVMRAGSALELEPLGAPDAILVDAPCSGSGTWRRHPEGKWRLSPENLEELTELQYRLLC 364 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + S VK GG VV+S CSL ++EEVV+K LR+ P E + L+P Sbjct: 365 RAFSLVKKGGKVVYSTCSLLAAENEEVVEKALRAFPEISERPLSADFGGIACGRGGVLTP 424 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E DGF+ A + Sbjct: 425 ENPW----------------TDGFYLAAFSK 439 >gi|158425326|ref|YP_001526618.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571] gi|158332215|dbj|BAF89700.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571] Length = 433 Score = 177 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 106/460 (23%), Positives = 162/460 (35%), Gaps = 45/460 (9%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L+ ++ +R + F D+ + ++ LR Sbjct: 1 MTPS--ARLSAAIDILADIIARRRPAGDAIKDWGLSHRFAG--SGDRAALSGLIFDALRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 V+ + LL +A + LDV AK R Sbjct: 57 RASCAHVMG--SEEP--------RALLLGMLATVRGLDVDA---------IAKLCDGARF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--Y 177 ++ R P+W L+ +G+ERV Sbjct: 98 APAPLSEDERTRLASPSLEGAAPWVRGDYPQWLDGELKAMFGEERVAEAEALAARAPVDM 157 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIR---------LKELPESIVSLPGFAEGVWWVQDA 228 T+K E +L + G I S P F +G VQD Sbjct: 158 RVNTLKAKPEEALAELAHLHPEPGQWSPLALRIPLGADGKQPPITSEPAFVKGGVEVQDE 217 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 + I L + VLDLCA GGKT +L + + ++ A D RRL+ + L R Sbjct: 218 GSQIAAILAAPMPGSQVLDLCAGAGGKTLELAALMDNKGQLYAHDSDVRRLKPIHERLQR 277 Query: 286 LHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + I + D VLVDAPC+ TGT RR+PD W + + Sbjct: 278 AGVRNVQIRAPRGTADVLSDLEGHMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAERTA 337 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q K+L Q + +VKPGG + + CSL ++ ++ +L P +VP A Sbjct: 338 EQAKILEQAVRYVKPGGRLAYVTCSLLNSENAGQIRALLEKHP-DFSVVPSTEAVLALGS 396 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +AL P+ L + +G DGFF L+R Sbjct: 397 RGLALRQAALD--LPEGLM-LTPRRTGTDGFFISVLKRAA 433 >gi|148255023|ref|YP_001239608.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium sp. BTAi1] gi|146407196|gb|ABQ35702.1| putative SUN-family protein, RNA methyltransferase [Bradyrhizobium sp. BTAi1] Length = 432 Score = 177 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 97/464 (20%), Positives = 165/464 (35%), Gaps = 57/464 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ + R L F D+ + +V LR Sbjct: 1 MTP--AARLSAAIDIIETIEADRAPAAKALKDWGTSHRFAG--SGDRAAIAGLVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 V++ + +L++ LDV + +R Sbjct: 57 RASSAWVMEDDSAR------ARVLGMLKL----ERGLDVPTIGAM---------CDGSRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYI 178 + + + P+W L +G +R A++ A +PL + Sbjct: 98 APPPLTDQEEKALASRTTEGAPSPVAGDYPDWLDPYLAAVFGDDRVAEAMAMASRAPLDL 157 Query: 179 DLT-VKFDIETW---AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDA 228 + +K E L AV P I L+ + PG F +G VQD Sbjct: 158 RVNTLKAKREKVQASLKHLGAVPTPWSPIGLRITLGADARNPGIHAEEDFIKGAIEVQDE 217 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + V+DLCA GGKT A ++ ++ A D KR+L + L R Sbjct: 218 GSQLAALFTAAKPGEQVIDLCAGAGGKTLALAAMMGGKGRLIATDDDKRQLAPIHERLSR 277 Query: 286 LHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 ++ D+ + D V++DAPC+ TGT RR+PD W + Sbjct: 278 AGVHNADVRSPKGDADPLADIRASADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRLK 337 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L + VKPGG + + CS+ + ++ + V+ + P + P + D Sbjct: 338 DQAEVLDRAAGLVKPGGRIAYITCSVLQPENGDQVRGFVARHP-EFSIQPPDQTATVLWD 396 Query: 403 MAMALSP------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A A + EGW+ + +G DGFF L++ Sbjct: 397 KAEAFAEAALKSDEGWL---------MTPRRTGTDGFFVSVLKK 431 >gi|326319222|ref|YP_004236894.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376058|gb|ADX48327.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 461 Score = 177 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 119/444 (26%), Positives = 181/444 (40%), Gaps = 47/444 (10%) Query: 25 LTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKY 80 + ++ + G S L+ D + V+A+ LR L R +A+ + PR Sbjct: 30 VDAVMAVRGGQSGTAALAAVDPVLRAGVQALFFAVLRQLGRAEALRAQLAPRRPKPRVDA 89 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE--- 137 L L + Q + +V+ AVE AKR R A VN+ LRR RE+ Sbjct: 90 LLCSTLALG-WQAGAAPYEPFTLVNQAVEAAKRHAATRGQAAFVNACLRRFLRERDALVA 148 Query: 138 -LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAHKLN 194 P W+ ERL + + + + + K D+ + L Sbjct: 149 ATESDPVARWNHPAWWIERLRKDHPGQWEQILRANNAQAPMALRIHRGKVDMAGYLAALE 208 Query: 195 AVMLPTGGIR----LKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVL 246 A + + + E P+ + LPGFA+G VQD +A L VL Sbjct: 209 AAGMKAWPVTDTGLVLESPQPVQRLPGFADGWVSVQDLAAQQAAPLLLSGLDLGRPLRVL 268 Query: 247 DLCAAPGGKTAQLIVSG-----AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297 D CAAPGGKTA L+ VTAL++ R ++ L RL L A ++ D Sbjct: 269 DACAAPGGKTAHLLEYAGAGSPVHVTALEIDPLRSARIGETLQRLGLQA-QVLVADAGRP 327 Query: 298 ---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 C + FDA+L+DAPC+++G +RRHPDV W R DI + A Q +LL Sbjct: 328 EDWWQQACGGEPFDAILLDAPCTASGIVRRHPDVRWLRRPGDIAQLATQQARLLSTLWPL 387 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 ++PGG +++ CS+ + + ++ VQ L ++ L + G +R Sbjct: 388 LRPGGRMLYCTCSVFRAEGDDTVQSFLANNNDAHLLPSPGHLLPRDPGDG------GSVR 441 Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL 438 P DGFF L Sbjct: 442 ENPSRE---------HDGFFYALL 456 >gi|305667349|ref|YP_003863636.1| putative sun protein [Maribacter sp. HTCC2170] gi|88709397|gb|EAR01630.1| putative sun protein [Maribacter sp. HTCC2170] Length = 403 Score = 177 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 91/457 (19%), Positives = 160/457 (35%), Gaps = 72/457 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L + + +++ RD+ + +R+ Sbjct: 1 MKLHRNLVFAVIDALGLIFNEGEYADKVVEKVLKRDKRWG--SRDRGFIAETTYDIVRWK 58 Query: 61 PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + + ++L R +++ +LR + D+ D Sbjct: 59 RLYAEIAEVKAPYSRANLFRL-FTVWAVLR-GI------DLPD----------------- 93 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + +L RR+ EL + IP+W E G++ + A Sbjct: 94 --WKQLEPVPARRIKGRFDELSKIRKFKESIPDWIDELGVKALGEKLWTSEIAALNKQAD 151 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228 + L V E L + I+ ++ + F +G + VQDA Sbjct: 152 VILRVNSLKTTKEKLRKSLLDDGIVAEPIKGYSSALKLAERTNVFTKQSFKDGWFEVQDA 211 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ + + V+D CA GGKT L + + ++ ALD+ +L++L+ R Sbjct: 212 SSQLVSEFLDVQPGQRVVDTCAGAGGKTLHLAALMQNKGQLIALDIYDNKLKELKRRARR 271 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + + + K D VL+DAPC+ G +RR+P W D + K Sbjct: 272 NGAHNIEPRHISSTKIIKKLYNKADRVLIDAPCTGLGVLRRNPGAKWKMQPDFLEKITKT 331 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++L VK GG +V++ CS+ Q++ E V+ L S Sbjct: 332 QQEILRSYSKMVKSGGKMVYATCSILPQENNEQVKSFLAS----------------EEGK 375 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ E KI SG DGF+ L R Sbjct: 376 DFTLAKEN----------KIFASKSGYDGFYMALLER 402 >gi|300703300|ref|YP_003744902.1| ribosomal RNA small subunit methyltransferase b (rsmb) [Ralstonia solanacearum CFBP2957] gi|299070963|emb|CBJ42272.1| Putative ribosomal RNA small subunit methyltransferase B (rsmB) [Ralstonia solanacearum CFBP2957] Length = 464 Score = 177 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 170/446 (38%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + + L R++ ++ LR Sbjct: 58 KVLARLLHFAAPADMVVSQYFREHS--ALGHRERGIIAEAAFAVLRRKVEF----GQFAE 111 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + ++L+ + + Q A + + + + +R ++ RV Sbjct: 112 SG---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPPEAEWLDRWAIIDRTALAPRV- 162 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + +P+W + L +G+ A++ A ++P +DL V + E Sbjct: 163 ------------RANLPDWLFDALVAQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAV 210 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL Sbjct: 211 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 270 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGKT + + S ++ A DVS++RL L L R L +D+ Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLANLGPRLARSGLSNVHPARIDSEH 330 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 390 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++++VV++ L V + + I + M ++ + Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELY 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 447 PQV--------HQTDGFFAAVLERRA 464 >gi|86133711|ref|ZP_01052293.1| NOL1/NOP2/sun family protein [Polaribacter sp. MED152] gi|85820574|gb|EAQ41721.1| NOL1/NOP2/sun family protein [Polaribacter sp. MED152] Length = 404 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 90/460 (19%), Positives = 154/460 (33%), Gaps = 76/460 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + + + + ++ RD+ V + +R+ Sbjct: 1 MRLHRNLTFAVIDSIRDIFNEGVYADKAVEKALKRDKRWG--ARDRKFVAETIYDIVRWN 58 Query: 61 PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + R + +LR + + D+ + E Sbjct: 59 RLYAEIAE--VKVPYDRDNIWRLFSVWCILR-GI------KLPDWNQIGDVPE------- 102 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 RR+ EL + IP+W E + G+E A Sbjct: 103 ------------RRIKGRFAELSKTRKFRESIPDWMDELCVSELGEEVWTKEIAALNQQA 150 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQD 227 + L E KL + T + ++ F G + VQD Sbjct: 151 SVILRTNTLNISKELLQKKLRTENVITQFVPDHPDALILEERANVFRTEAFHNGFFEVQD 210 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ + + V+D CA GGKT L + + +V A+D+ + +L KL+ Sbjct: 211 ASSQLVAAYLDVKPGMKVVDTCAGAGGKTLHLSALMENKGQVIAMDIYESKLRKLKVRAK 270 Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + D+ +D+ K D VL+DAPCS G IRR+PD W + I Sbjct: 271 RNKAHNIDLRVIDSTKPIKKLHGKADRVLIDAPCSGLGVIRRNPDSKWKLQPEFIDNIKK 330 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKSI 401 Q+++L VKPGG +V++ CS+ ++++ V + L S V N Sbjct: 331 VQQEILQSYSKMVKPGGKLVYATCSILPSENQDQVNEFLTSESGKDFTFVSDNKVLA--- 387 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 SG DGF+ L + Sbjct: 388 ------------------------HKSGFDGFYMALLEKK 403 >gi|150398714|ref|YP_001329181.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419] gi|150030229|gb|ABR62346.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419] Length = 429 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 86/447 (19%), Positives = 149/447 (33%), Gaps = 45/447 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L + +++ + L F D+ + IV LR ++D Sbjct: 10 AIEVLDDIEKRKRPVADALRDWGLSHRFAG--SGDRAAIGNIVYDALRMKLSHAYLMD-- 65 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 S + L + + DV A ++R + + + Sbjct: 66 SDSPV--------ALAHAVLYRQWGFDV---------DTLAAEFADDRFAPEPPSEAMMT 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 ++ + + IPEW + E + + + A +DL V T Sbjct: 109 AFDQRRLEDAPLHVRADIPEWTQASFEENFSDDWLAEA-QALAGRPTLDLRVNTLKATRE 167 Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237 L A+ ++ + F +G + VQD + I L Sbjct: 168 KVLKALERSGAEPATIARHGVRIPAGEGASRLPNVTAEVSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD CA GGK + + + +V A D ++RL + L R + Sbjct: 228 FPREGEQVLDYCAGGGGKTLAISAAMNNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D VLVDAPC+ TGT RR PD W ++ + Q + L F Sbjct: 288 ETAGSLASLVGRADRVLVDAPCTGTGTWRRRPDTKWRLTQKNLEERLAQQEEALAGAARF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V+PGG +++ CS+ +++E V +P L ++ Sbjct: 348 VRPGGHLIYVTCSVLPEENESQVYGFCDDNPEFEVLSAADNWAALFGTDRPQPWSADM-- 405 Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL-RR 440 + S+G DGFF + R+ Sbjct: 406 ----KTVTLTPASTGTDGFFFCLMGRK 428 >gi|239814286|ref|YP_002943196.1| Fmu (Sun) domain protein [Variovorax paradoxus S110] gi|239800863|gb|ACS17930.1| Fmu (Sun) domain protein [Variovorax paradoxus S110] Length = 423 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 92/454 (20%), Positives = 152/454 (33%), Gaps = 60/454 (13%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ L+ V++ ++ + D R++ + V LR D + Sbjct: 8 EATADLVGLVLKFDHPADQVVSRFFRDHREFG--PRERATLAETVYTVLRKKLLFDHLSP 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 S R IL + + KR +N K + + Sbjct: 66 SGSGSKERRMA-------------ILGFHGPRDFLKSALNDTEKRWLDNCDAVKPDDLLE 112 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 R +PEW L + A+ ++ P +DL V Sbjct: 113 R--------------HRHNLPEWLVGPL-KAQLGDGFWALVESLQQPAPLDLRVNALTDK 157 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGT 239 +L + + I L FA G VQD + + L Sbjct: 158 RAEVKAELAKAAIKSEATPFSPWGLRIDGKPALTKLDAFARGAVEVQDEGSQLLALLLDA 217 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED---- 292 V+D CA GGK + + ++ A D S RL+ L+ L R L Sbjct: 218 KRGEMVVDFCAGAGGKTLAIGATMRNTGRLYAFDTSAHRLDALKPRLARSKLSNVHPAAI 277 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D D VLVDAPCS GT+RR+PD+ W + + + Q +L Sbjct: 278 AHERDDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPQSVEELTVKQAAILQSAA 337 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG- 411 +K GG +V++ CS+ +++E + + ++P V ++ AL G Sbjct: 338 RLLKSGGRLVYATCSVLPEENEAIAEAFSAANPDFVPQDAAELLQGLKVEGFEALCAGGA 397 Query: 412 ----WIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 ++R+ P DGFFA R+ Sbjct: 398 DGRRYLRLWPH--------RHATDGFFAAVWNRK 423 >gi|114327812|ref|YP_744969.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis CGDNIH1] gi|114315986|gb|ABI62046.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis CGDNIH1] Length = 428 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 96/461 (20%), Positives = 168/461 (36%), Gaps = 58/461 (12%) Query: 1 MKSGMNARLVSS-HLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M ARL ++ LL + R + + + + + D+ V A LR Sbjct: 1 MTPS--ARLAAAITLLEEIEAAPRRPADAVANDFFRARRY--IGGSDRRAVSAQAWQVLR 56 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 R+ L + PR + LL K + Sbjct: 57 ARRRMGWWL----PEAPPRLLVAGHMLL----------------TGWTLEAVTKAFSGGQ 96 Query: 119 HFAKLVNSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 + + A +P+W R + +G +++ Sbjct: 97 YAPARLTETEHTALRLLEGHTLDHPEMPDAVRLELPDWILPRFVDRFGPALAAELAEMES 156 Query: 174 SPL-YIDLTV-KFDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWV 225 + + + K D +T L A + L + + F +G+ + Sbjct: 157 EAPLDLRVNLLKSDRDTARSALRAEGIEAEFTTLSPWGLRVHGRRPVTTGAAFRQGLIEI 216 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCN 282 QD + + L G ++ V+D CA GGK A +++ + A D S+ RLE Sbjct: 217 QDEGSQLIAALVGAGPDMRVVDYCAGAGGKTLAMAMTMLNRGHIVACDTSEPRLEGAVRR 276 Query: 283 LDRLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 L R ++ + D + FD VLVDAPC+ TGT RR+PD D+++ Sbjct: 277 LRRAGVHNVERHLLTAGDKWVKRRAGSFDRVLVDAPCTGTGTWRRNPDGRLRLTETDLLE 336 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +L + + ++PGG +V++ CS+ +++ ++ L P L+PL A+ Sbjct: 337 LVPKQADILDRAATLLRPGGRLVYATCSVLAEENTRQIEAFLARRP-EFRLMPLRQAWP- 394 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D AL+ + + +TP G DGFFA L + Sbjct: 395 --DAPAALTGD-MLSLTPRSF--------GTDGFFAAVLEK 424 >gi|260063220|ref|YP_003196300.1| putative sun protein [Robiginitalea biformata HTCC2501] gi|88783314|gb|EAR14486.1| putative sun protein [Robiginitalea biformata HTCC2501] Length = 405 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 146/455 (32%), Gaps = 72/455 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N L + + +++ RD+ + V +R+ Sbjct: 2 MRMHRNLVFAVWDGLDQIFNENAYADKVVEKLLRRDKRWG--SRDRGFIAETVYDMVRYR 59 Query: 61 PRIDAVL---DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + L R +++ +LR + E A Sbjct: 60 RLYAEIAGVSAPYSRQDLGRM-FAVWAILR-------------GHTLPDWKEFAG----- 100 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + RR+ L + A +P+W G+ A Sbjct: 101 --------TPERRIKGRFDALQESRAVRESVPDWLDALGAESLGEAVWDRELRALNQQAE 152 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228 + L V E L+ T I ++ F G + +QDA Sbjct: 153 VVLRVNRLKASPEQVRESLSEAGFETAPISGYPDALRLLERANVFGSEAFRSGWFEIQDA 212 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ L + V+D CA GGK+ L + + ++ ALD+ +L +L+ R Sbjct: 213 SSQRVAPLLAPEPGMRVIDTCAGAGGKSLHLAALMENKGQILALDIYANKLRELKKRAKR 272 Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + E D VL+DAPCS G +RR+PD W + + + Sbjct: 273 AGAFNIETRPIESSKTLKRLAGSADRVLIDAPCSGLGVLRRNPDAKWKLRPEFVEELTRT 332 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL +KPGG +V++ CS+ ++E+ V + L S Sbjct: 333 QAELLNSYSQLLKPGGKLVYATCSILPGENEQQVARFLDS------------------GA 374 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 A E RI SG DGF+ L Sbjct: 375 GQAFRLEEEHRIL--------ACESGFDGFYLALL 401 >gi|170694011|ref|ZP_02885167.1| sun protein [Burkholderia graminis C4D1M] gi|170141083|gb|EDT09255.1| sun protein [Burkholderia graminis C4D1M] Length = 479 Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 184/449 (40%), Gaps = 27/449 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V +L L + + + + V+ I T+R L + ++ + Sbjct: 38 AAQAVGAVRL-GAALPAALQTVFVAAPEGSAAAA-RGAVQDIAYRTMRRLGTAEWLIAKL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L ++A ++ + + + VVD AV +E LVN+ Sbjct: 96 VKKAPP---PHVGHVLACALALLIDDEASAAYTPFTVVDQAVGAISARREFAFAKGLVNA 152 Query: 127 ILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LR RE+ E P W+ + + + + ++ + + Sbjct: 153 VLRNFLRERDALLTEAQADEVARWNYPTWWIDAVRRAWPEAWQDVLAAGNTQGPLTLRVN 212 Query: 182 VKFDI-ETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + E + L + + P + +PGF EGV VQDA A + QL Sbjct: 213 ARHSTVEAYLQVLEDHHISASKVGDYAVMLATPMPVDRIPGFNEGVVSVQDAGAQLAAQL 272 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291 G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 273 LGVRDGMRVLDACAAPGGKTGHLLELANLQLVALESDVSRARRIGENLQRLKLEAEVRIG 332 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 333 DAGAPSKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVDEQRRILGAL 392 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VKPGG +++ CS+ ++ E Q V L S+ A A + G Sbjct: 393 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL-DAPGQLLPSVARAPADTSAG 451 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + G +S DGFF ++ Sbjct: 452 SH--AGEFADISAGANSDHDGFFYARFQK 478 >gi|257063705|ref|YP_003143377.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM 20476] gi|256791358|gb|ACV22028.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM 20476] Length = 531 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 92/440 (20%), Positives = 160/440 (36%), Gaps = 33/440 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+ + V + ++ ++ S + D + + +D Sbjct: 95 PARIAACLSCRIVRERDAFVSEVVPGVV--SRMGPMKPEDVAFATRLARGVVATSGALDD 152 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK------RDKENRH 119 ++ L S + +++ LRVS ++LYL DY VD VE R N Sbjct: 153 FINRNLYSPAD-IQPNVRDALRVSAYELLYLKKDDYVAVDQGVELVAYVEPKARALANAV 211 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 K+ + R + + ++ P W +RL G+E+ A +A + Sbjct: 212 LRKMARTASRWPFGDVGTDVVALSRKVAFPSWMAKRLVEEMGREQAAAFMEASNGDAPVH 271 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKEL---------PESIVS---LPGFAEGVWWVQD 227 V T L + L E P++I S F +G + D Sbjct: 272 AAVNAIRATDEEVLAVLQEQGADPNLVEGIPGCIRIGTPKAIRSDVVTKLFEDGKVLISD 331 Query: 228 ASASIPVQLFGT-LNNLSVLDLCAAPGGKTAQLIVSGAKVT-------ALDVSKRRLEKL 279 SA + +++ + G KT + + + ++D + + L Sbjct: 332 PSAQKVASFALPGEPPSAFIEVGSGRGTKTVLMQSNAMRKYGKQFPIVSVDDHPFKAKLL 391 Query: 280 RCNLDRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 R L + D K FDAV VDAPCS GT+RRHP++ W D Sbjct: 392 RNRAREYGLTSVQTKVADGRKLTSLYEKGSFDAVFVDAPCSGVGTLRRHPEIRWRLTERD 451 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNS 395 + K A Q +L+ S VK GG VV+S C++ ++++E VV++ L+ E+ + Sbjct: 452 VAKMADVQLDILIDAASLVKTGGQVVYSTCTVFREENERVVERFLKTKFGERFEMTEMLK 511 Query: 396 AYWKSIDMAMALSPEGWIRI 415 + + R Sbjct: 512 MSLEEDGPDAHFAVRLTKRF 531 >gi|207721448|ref|YP_002251889.1| cytosine-c5-methylase [Ralstonia solanacearum MolK2] gi|206586608|emb|CAQ17195.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia solanacearum MolK2] Length = 417 Score = 176 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 92/446 (20%), Positives = 171/446 (38%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + + L R++ ++ LR Sbjct: 11 KVLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAE 64 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + ++L+ + + Q A + + + + +R ++ RV Sbjct: 65 SG---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPPEAEWLDRWAIIDRTALAPRV- 115 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + +P+W + L +G+ A++ A ++P +DL V + E Sbjct: 116 ------------RANLPDWLFDALVAQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAV 163 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL Sbjct: 164 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 223 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGKT + + S ++ ALDVS++RL L L R L +D+ Sbjct: 224 MVVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEH 283 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 284 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 343 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++++VV++ L V + + I + M ++ + Sbjct: 344 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELY 399 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 400 PQV--------HQTDGFFAAVLERRA 417 >gi|294670899|ref|ZP_06735755.1| hypothetical protein NEIELOOT_02603 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307386|gb|EFE48629.1| hypothetical protein NEIELOOT_02603 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 421 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 94/446 (21%), Positives = 163/446 (36%), Gaps = 55/446 (12%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + LL+ ++ R + + + L ++D+ + +R +I AVL Sbjct: 10 ADLLAELLTFRQPADAVTSAFFRNRR--KLGRQDRAEIAETAFAAIRHYQKISAVL---- 63 Query: 72 ISSLPRKKYSLQQLLRVS-VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + L + I LD A F+ +N+ Sbjct: 64 RRPAAQARKAALAALVLGRGFNISRLDNLADDE--EKTFLAALKARKTEFSNGLNTAAE- 120 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 +P+W + + + + + +L + P +DL V + Sbjct: 121 -----------------LPQWLIDTMRSDFSDQDILNFGRSTACPAPLDLRVNALKAKRD 163 Query: 188 TWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L LP ++ F +G VQD + + L G Sbjct: 164 KILAELQTEGLPAEATPFSPWGIRLYDKSALGKHSRFLDGTLEVQDEGSQLVALLLGAKR 223 Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 ++D CA GGK + + ++ A D++++RL L+ + R L Sbjct: 224 GEIIVDFCAGAGGKTLAVGAMTANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGS 283 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D K D VLVDAPCS GT+RR+PD+ + + + + K A Q +L Sbjct: 284 EHDPRLGRLKGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETLAKLAEQQHSILNAAAEL 343 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VKP G +V++ CS+ Q++E +++ LR P LN A + Sbjct: 344 VKPQGRLVYATCSILPQENEGQIERFLREHPDF---EALNCADLPGSPKISPDT------ 394 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 K+D G DGFFA L+R Sbjct: 395 ---GTYLKLDTAVHGTDGFFAAVLQR 417 >gi|225025486|ref|ZP_03714678.1| hypothetical protein EIKCOROL_02386 [Eikenella corrodens ATCC 23834] gi|224941770|gb|EEG22979.1| hypothetical protein EIKCOROL_02386 [Eikenella corrodens ATCC 23834] Length = 420 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 95/448 (21%), Positives = 160/448 (35%), Gaps = 62/448 (13%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL V+ L+ + L ++D+ + V LR L + + VL Sbjct: 12 LLGQVLSFEQPADALVSAYFRSHK--KLGRQDRHEIAETVFAALRHLQK----IQSVLPE 65 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + + + + L + R A N+ Sbjct: 66 PVRQSRRAALAALVLG-----------------------RGISISALADCTNAEETEFLG 102 Query: 134 EKIELLQRIAGI----SIIPEWFKERLENF-YGKERVLAISDACISPLYIDLTVKF---D 185 AG + +PEW +L + E +LA + +P +DL V Sbjct: 103 YLKAKKTEFAGQLNTAAELPEWLIAQLRAQGWNDEHILAFGRSTATPAPLDLRVNTLQAK 162 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLFGT 239 + +L + + + P F EG VQD + + +L G Sbjct: 163 RDKVLAQLQSEGIRCEATPYSPWGIRLYDKSALMCHPLFLEGTIEVQDEGSQLLARLTGA 222 Query: 240 LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 ++D CA GGKT + + ++ A DV+++RL KL+ + R L Sbjct: 223 RRGEIIVDFCAGAGGKTLALGAAMNNSGRLYAFDVAEKRLAKLKPRMVRAGLTNISPQRI 282 Query: 295 --EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 E D D VLVDAPCS GT+RR+PD+ + + + I + A Q +L Sbjct: 283 GSETDPRLERLIGKADRVLVDAPCSGLGTLRRNPDLKYRQSPERITELAKQQAAILEAAA 342 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 V PGG +V++ CS+ ++E+ ++ + P L +A D S + Sbjct: 343 RLVHPGGRLVYATCSVLATENEQQAERFSAAHPDWQ----LANAAELLPDCPELFSGSPY 398 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ DGFFA R Sbjct: 399 LQL--------STAEHRTDGFFAAVWTR 418 >gi|18977038|ref|NP_578395.1| nol1-nop2-sun family putative nucleolar protein IV [Pyrococcus furiosus DSM 3638] gi|18892673|gb|AAL80790.1| putative nucleolar protein IV (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 452 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 93/438 (21%), Positives = 169/438 (38%), Gaps = 41/438 (9%) Query: 30 DLEYGDSAFRLLSQRDQIL---VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL 86 AF+ ++ L + I ++ ID + V+ + L+ L Sbjct: 32 SQYAKREAFKKHDIKEAWLNRVLTMIFYDIMKKQGLIDKAIKDVVGVTPLILDPWLRAAL 91 Query: 87 RVSVAQILYLDVADYAVVDLAVEQAKRD---KENRHFAKLVNSILRRVSREKIELLQ--- 140 RV+ +L+ D + + +A K + + I R+ K Sbjct: 92 RVAFDVVLFHD-PNQNTLKNLKWKASDFISSKTHPYVGMYYWDIFERILEYKPNPKTELE 150 Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200 R+ + P W ER+ G E +I + V T + Sbjct: 151 RLEWEYLAPAWLIERVRKLLGDETKAFFEAVNRKHEWISIRVNTLKTTPEEVIKEFEEEG 210 Query: 201 GGIRLKELPESIVSLPG---------FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + ++ + G F +G VQ+ ++++ + V+DL AA Sbjct: 211 VEVVQSKRIPVVLKIKGPYDFDSSYLFRKGKIIVQEEASAVASVILDPKPGEVVVDLAAA 270 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KK 305 PGGKT + + + K+ A D+ K R+++L+ + R+ + I DA ++ Sbjct: 271 PGGKTTHMAELMKNRGKIFAFDIDKARMKRLKDFVSRMGIKIVKPIVKDARKAPEILGEE 330 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 + D V++DAPC+S+GTI ++P++ W I + A QR+LL VKPGG ++++ Sbjct: 331 VADRVMLDAPCTSSGTIGKNPELRWRLREQKIEEMAQLQRELLESAAKLVKPGGRLLYTT 390 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ ++ E+ V L + LV L+ Y EG +R P Sbjct: 391 CSIFIEEDEDNVSWFLETYK-EFRLVKLSGPYDPGF-------LEGTMRAWPH------- 435 Query: 426 VSSGMDGFFAVALRRLIQ 443 GFF ++ Q Sbjct: 436 -RHETIGFFYALFEKVTQ 452 >gi|332976014|gb|EGK12885.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp. 1501(2011)] Length = 530 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 116/530 (21%), Positives = 210/530 (39%), Gaps = 108/530 (20%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R+ + L + + + D L D+ A++ TLR + Sbjct: 17 NVRVAVINTLLAIQQGQS------LSSLLDPLLNSLKGEDKGFAHALLLTTLRHWYATER 70 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +LD + + + + ++ ++V + Q+LYL+VAD+A + VE K R + LVN Sbjct: 71 LLDSLSDNPIDEIE--VRTTIQVGITQLLYLNVADHAAIHETVEAVKHIDLAR-ASGLVN 127 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 +ILR+V++ + ++ +P W ++L+ + E ++ + + L V Sbjct: 128 AILRKVAKNPNKFRKKANKNHSLPNWLAQQLKADWR-ENYNELTQSLRQSAAMFLRVNPL 186 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE---------------------SIVSLPGFAEG 221 D E++ +L + + L+ + + LP F EG Sbjct: 187 QSDSESYLSQLAEAEIAAELVSLETSIKTDTADELVEIKQQLIELIDSVPVSHLPEFEEG 246 Query: 222 VWWVQDASASIPVQLFG----------TLNNLSVLDLCAAPGGKTAQL------------ 259 + VQDA A + + + +LD CAAPGGK A Sbjct: 247 IASVQDAHAQLAAPIINALLQKAVTANPKEKVRLLDACAAPGGKLAHWLELLGVQESEQT 306 Query: 260 ----------------IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI---------- 293 +S ++TA+D R+ ++ NL+RL L A + Sbjct: 307 GLFHVKQDDELNTDTTNISKVELTAIDNEAPRITRIFENLERLQLPAPIVNSKLHLDIEC 366 Query: 294 -----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D FDA+L+DAPC++TG IRRHPD+ R +D+ +A Q ++L Sbjct: 367 VDATSWQAQPTDKDSDSGFDAILLDAPCTATGVIRRHPDITLLRTEEDVQHTAQLQEQIL 426 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG ++ CS+ KQ++ E +Q L+ V + + I+ A+ Sbjct: 427 DNLWPQLKVGGYFLYVTCSILKQENVEQMQAFLKRHMDAVAVAFDDEQTNWGIEQAVG-- 484 Query: 409 PEGWIRITP---------------DMLEKIDGVSSGMDGFFAVALRRLIQ 443 + P D ++I ++G DGF+ L+++ Sbjct: 485 ----RQCLPIYKVSESLEPTAVDQDSEQQIATPAAGGDGFYYAVLKKVST 530 >gi|296446291|ref|ZP_06888237.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b] gi|296256192|gb|EFH03273.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b] Length = 430 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 149/458 (32%), Gaps = 47/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + +L+ + +R + F +D+ + +V LR Sbjct: 1 MTPAAHI-SAAIEILAELSARRRPAADAIKDWGLSHRFAG--SKDRAAIAGLVFDALRKR 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 V+ + ++ ++ + L A + A Sbjct: 58 ASAAHVMGEETP----------RAVMLGALREARGLAGEAIAALCSGEGHAPAPLSEEER 107 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 +L N+ L PEW ER +G + A + +DL Sbjct: 108 ERLANATLADAPAHV---------RGDYPEWLAERFAEAFG-DAAEEEGRALAARAPLDL 157 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDA 228 + + + ++ + P F +G QD Sbjct: 158 RANILKSSREDAMRRLAHLHPEPTPLSPLGLRLPAGPSGRGPALAAEPAFVKGHVEPQDE 217 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + L VLD CA GGKT A + + ++ A D RRL + L+R Sbjct: 218 GSQLAALLCAAEPGEQVLDYCAGGGGKTLALAGQMHNRGQIYAFDDDGRRLTPIYPRLER 277 Query: 286 LHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + + D VL+DAPC+ TGT RRHPD W + Sbjct: 278 AGARNVQVRAPRGGADMLADLEARCDLVLIDAPCTGTGTWRRHPDAKWRLAPGALAARLE 337 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR+LL + +V+PGG +V+ CSL + ++E + L + +A + Sbjct: 338 EQRELLAKAPLYVRPGGRLVYVTCSLLRDENEAQIAAFLAEHSGFAAVPAEEAAAAAQLP 397 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ SG DGFF +RR Sbjct: 398 ELARFASSLGL------GLRLTPRVSGTDGFFVCVMRR 429 >gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 431 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 179/448 (39%), Gaps = 48/448 (10%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS-LP 76 + + SL L + R V+A+ + +R L +D VL+ VL S + Sbjct: 1 MEERGHSLKAALRNALR-----GIGGRRHRFVQALAHELVRVLGNVDLVLNRVLRGSTVE 55 Query: 77 RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 L+ LRV +I + V V+ K +H A+ N+ILR+V R Sbjct: 56 DLHPYLRNALRVGTWEIHWRREHPGPVTKAVVDVVKERVGPKH-ARFANAILRQVERVNP 114 Query: 137 --------ELLQRIAGISIIPEWFKERLENFYG-KERVLAISDACISPLYIDLTVKF--- 184 + R A P+W+ E + + + + + +AC + V Sbjct: 115 EEVISSIRDPTARFAARYNFPKWYVELVRSAFDSMDELRKFLEACNRRPARYVRVNTLVS 174 Query: 185 DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 D E +L + ++ ++ P F +G + Q +++ Sbjct: 175 DPEEVVRRLKRRGIEAERDPDVPDVLRIRSAETPVIKTPEFKKGEVYPQTKASAAVAHAA 234 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291 ++V+DLCAAPGGKT L + ++ A+D+ +R L+ + + H Sbjct: 235 EPEPGMTVVDLCAAPGGKTTHLAQLMEGRGEIIAIDMHPKRFGTLKKRVRQFHADDIVET 294 Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLL 349 + DA D + + D VLVD PC+ TG++ P+ W R T + K A Q +LL Sbjct: 295 LCMDARDAPDQLGEGIADLVLVDPPCTGTGSVYSKPEKRWDRETTGEPTKWAQLQWELLK 354 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + +KPGG +V+S CS+ ++E ++++++R +ELV + + Sbjct: 355 VAVRLLKPGGRIVYSTCSITLTENERLIERLVRRYRG-LELVDVPLEWASPGVRMPEA-- 411 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVA 437 RI P DGFF Sbjct: 412 ---RRIWPH--------RHDTDGFFVAR 428 >gi|163757566|ref|ZP_02164655.1| Sun protein [Hoeflea phototrophica DFL-43] gi|162285068|gb|EDQ35350.1| Sun protein [Hoeflea phototrophica DFL-43] Length = 430 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 160/449 (35%), Gaps = 43/449 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ + + + L F D+ + +V+ LR +++ Sbjct: 8 QAAIEVLTEIETRHRPVPDGLKDWGLSHRFAG--SGDRAAISNLVHDALRMKLSHGFMMN 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++ LLR + + E + +R ++ ++ Sbjct: 66 -----GDAPADLAVATLLR------------QWRISPE--ELTATLEGDRFAPEIPSAES 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + IPEW E +G E + A S +DL V + Sbjct: 107 LADCLARDLAQAPAHVRADIPEWLAGSFERAFGPEW-ELEAQALTSRPPLDLRVNTLLSN 165 Query: 186 IETWAH----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +L + + + S FA G + +QD + + Sbjct: 166 RDQVLEAFSDRDPKPTRLAPFGVRFEAGEGPQRQIAAASEVSFARGWFEIQDEGSQLAAG 225 Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L VLD CA GGK A ++ + ++ A D +RRL + + R D Sbjct: 226 LVDAQPGEDVLDYCAGGGGKSLAFAAMMNNEGRIFAYDADRRRLAPMVERMRRAGADIID 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 I E A + D VL+DAPC+ TGT RR PD W +I Q K+L Sbjct: 286 IRERAADLNGLESKMDRVLIDAPCTGTGTWRRRPDAKWRISEKNITDRMADQDKVLDAAC 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++V+PGG + + CSL +++ + V+ L+ P E + L + + A P Sbjct: 346 AYVRPGGELAYVTCSLLPEENTDRVKAFLQRHP-EFETISLKQRWRSVAADSEAPVPYAD 404 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ + +G DGF+ RR Sbjct: 405 Q----NLGLLLSPRRTGTDGFYFAGFRRK 429 >gi|187929791|ref|YP_001900278.1| Fmu (Sun) domain-containing protein [Ralstonia pickettii 12J] gi|187726681|gb|ACD27846.1| Fmu (Sun) domain protein [Ralstonia pickettii 12J] Length = 465 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 160/449 (35%), Gaps = 61/449 (13%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + L R++ ++ LR Sbjct: 59 KVLARLLHFAAPADMVVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 112 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S A L + + A +N + Sbjct: 113 SGT------------------------GPARRRLVLLGLLQTAGREAIAPFLNPVEAEWL 148 Query: 133 REKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 + +P+W + L +G E A++ A ++P +DL V + Sbjct: 149 DRWENRDRAALAARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGER 208 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240 + L + L + + P F G VQD + + QL Sbjct: 209 DAVLATLAEAGIEGSAAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPK 268 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 V+D CA GGKT + + S ++ A DVS++RL L L R L +D Sbjct: 269 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLSNVHPGRID 328 Query: 298 AFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D VLVDAPCS GT+RR+PD+ W + + + + Q +L Sbjct: 329 SEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAAR 388 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +KPGG +V++ CS+ +++++VV++ L + V + + I + M ++ Sbjct: 389 LLKPGGRLVYATCSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGP----YL 444 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGFFA L R Sbjct: 445 ELYPH--------THQTDGFFAAVLERRA 465 >gi|319792067|ref|YP_004153707.1| fmu (sun) domain protein [Variovorax paradoxus EPS] gi|315594530|gb|ADU35596.1| Fmu (Sun) domain protein [Variovorax paradoxus EPS] Length = 423 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 147/458 (32%), Gaps = 68/458 (14%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ L+ V++ ++ + D R++ + V LR D + Sbjct: 8 EATADLVGLVLKFDHPADQVVSRFFRDHREFG--PRERATLAETVYTVLRKKLLFDHL-- 63 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF-AKLVNSI 127 + R F +N Sbjct: 64 -----------------------------SPSGSGSKERRMAILGFHGPRDFLKSALNDT 94 Query: 128 LRRVSREKIELLQRI---AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +R + +PEW L+ G + + ++ P +DL V Sbjct: 95 EKRWLDNCDAVKPEDLLERHRHNLPEWLVAPLKTQLG-DGFWPLVESLQQPAPLDLRVNA 153 Query: 185 ---DIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQ 235 +L + + I L FA G VQD + + Sbjct: 154 LTDKRAEVKAELAKAAIKSEVTPFSPWGLRIEGKPALTKLDAFARGAVEVQDEGSQLLAL 213 Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L V+D CA GGK + + ++ A D S RL+ L+ L R L Sbjct: 214 LLDAKRGEMVVDFCAGAGGKTLAVGATMRNTGRLYAFDTSAHRLDALKPRLARSKLSNVH 273 Query: 293 ----IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 E D D VLVDAPCS GT+RR+PD+ W + + + Q +L Sbjct: 274 PAAIAHERDDRIKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSPKSVEELTVKQTAIL 333 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 VK GG +V++ CS+ +++E + + ++P + ++ AL Sbjct: 334 QSAARLVKSGGRLVYATCSVLPEENEAIAEAFSAANPDFEPVDAAELLQGLKVEGFEALC 393 Query: 409 PEG-----WIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 G ++R+ P DGFFA R+ Sbjct: 394 AGGADGRRYLRLWPH--------RHSTDGFFAAVWNRK 423 >gi|319404603|emb|CBI78209.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498] Length = 428 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 77/438 (17%), Positives = 149/438 (34%), Gaps = 25/438 (5%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + L F ++ D+ + IV LR + +D Sbjct: 8 QAAIDILQEIETYYRPAGEALKDWGLSHRFAGVN--DRAAIGTIVYDALRRRYSLQWRMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +++ ++ ++ L + V A + + L Sbjct: 66 S----------NNIRDVVFGTLFDSGMLTIEQVDKVLEGDRFAPQLLAPQQRKAWQQRQL 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185 + + + P + ++ + ++ + L Sbjct: 116 VNAPDYIRADIPQWCKAHLYPLFADNWIKEAAALATRPPLDLRVNSLKATPKKVLKALEK 175 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + L I E ++ + P F +G + +QD + + L + + Sbjct: 176 TKVKPFSWFQQALRIEPIEKFERHPNVQAEPAFQKGYFEIQDLGSQLVSYLVEAKAGMQL 235 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT A + + ++ A D K RL + L R ++ Sbjct: 236 LDYCAGAGGKTLALAANMENRGQIYAYDSEKIRLAPIFNRLQRAGIHNVQPRVYKEELKS 295 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 D VL+D PCS TGT RRHPD W + + Q +L + + ++KPGG +V Sbjct: 296 LIGQMDIVLLDTPCSGTGTWRRHPDAKWRLTLQKVQQRQEEQFAILNEALIYIKPGGRLV 355 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL ++EE + + L+ + P+N + ++ D Sbjct: 356 YITCSLFNDENEEQISRFLQKHSNFL---PINMQKLWYRHFSSSI----MQPAFSDYGLT 408 Query: 423 IDGVSSGMDGFFAVALRR 440 + ++ DGFF L++ Sbjct: 409 LSPAATKTDGFFLSILQK 426 >gi|294788211|ref|ZP_06753454.1| putative ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] gi|294483642|gb|EFG31326.1| putative ribosomal RNA small subunit methyltransferase B [Simonsiella muelleri ATCC 29453] Length = 425 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 89/447 (19%), Positives = 171/447 (38%), Gaps = 53/447 (11%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +++L+ ++ +L + + L + D+ + LR +I AVL Sbjct: 10 ANVLATMLTFDQPADVVLSNYLRE--QKKLGRNDRHEIAETAFAALRHYEKIVAVL---- 63 Query: 72 ISSLPRKKYSLQQLLRVS-VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + L + I L+ + + F+ +N+ Sbjct: 64 RRPYVQSRKTALAALVLGRSFNISQLEDLLNEDDNEKEFLSNLKARKSEFSGSLNTASE- 122 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 +PEW +L+ + +E +L + P +D+ V + Sbjct: 123 -----------------LPEWLINQLKQNFNEEEILQFGRSVAQPAPLDVRVNTLNGKRD 165 Query: 188 TWAHKLN-----AVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L A+ P ++ + + F G VQD + + QL G Sbjct: 166 KVLAQLQTEFPQAIATPFAPHGIRFPDKPALNKHELFLNGTLEVQDEGSQLLAQLVGAKR 225 Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---- 294 V+D CA GGK + + ++ A D++++RL L+ + R L Sbjct: 226 GEIVVDFCAGAGGKTLAIGAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPEKISS 285 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D D VLVDAPCS GT+RR+PD+ + + + I K Q+ +L + Sbjct: 286 ENDPRITRLHGKADRVLVDAPCSGLGTLRRNPDLKYRQSPETIAKLIQQQQNILQAASAL 345 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V GG +V++ CS+ ++++ V+ L +P EL+ + + L+ +++ Sbjct: 346 VASGGRLVYATCSVLPEENQHQVEHFLTHNP-EFELLDCSQLLAA---QKIDLNTGKYLQ 401 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + DGFFA L+R Sbjct: 402 L--------NTATHHTDGFFAAVLQRK 420 >gi|207742571|ref|YP_002258963.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia solanacearum IPO1609] gi|206593964|emb|CAQ60891.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia solanacearum IPO1609] Length = 406 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 92/445 (20%), Positives = 172/445 (38%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L+ ++ ++ + + + L R++ ++ LR S Sbjct: 1 MLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAES 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + ++L+ + + Q A + + ++ + +R ++ RV Sbjct: 55 G---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPSEAEWLDRWAIIDRTALAPRV-- 104 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L +G+ A++ A ++P +DL V + E Sbjct: 105 -----------RANLPDWLFDALVVQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAVL 153 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L + L + + P F G VQD + + QL Sbjct: 154 ATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEM 213 Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CA GGKT + + S ++ ALDVS++RL L L R L +D+ Sbjct: 214 VVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEHD 273 Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 274 AKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKA 333 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ +++++VV++ L V + + I + M ++ + P Sbjct: 334 GGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELYP 389 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + DGFFA L R Sbjct: 390 QV--------HQTDGFFAAVLERRA 406 >gi|154244404|ref|YP_001415362.1| Fmu (Sun) domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158489|gb|ABS65705.1| Fmu (Sun) domain protein [Xanthobacter autotrophicus Py2] Length = 433 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 95/459 (20%), Positives = 163/459 (35%), Gaps = 47/459 (10%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L+ + +R L F D+ + IV TLR Sbjct: 1 MIP--AARISAAIEVLTDLTTRRRPAADALKDWGLSHRFAG--SGDRAAIAGIVYDTLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 V+ + + +L + + LD A + A Sbjct: 57 RASAAHVMGS------EEPRALVLGMLVL----MRGLDGEAIAALADGSRFAPAPLTEDE 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A+L + ++ P+W L + +G++ V+A A + +D Sbjct: 107 RARLADPSIKGAPPFV---------RGDYPQWLHASLRHVFGED-VVAEGAALATRAPLD 156 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGI---------RLKELPESIVSLPGFAEGVWWVQD 227 L V + E +L+ + G + + + P F G VQD Sbjct: 157 LRVNTLKGEPEAVRAELSHLNPAPGRFSPLALRILLDSEGKAPPVSAEPAFLRGEVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 + I L + VLDLCA GGKT + + + ++ A D RRL+ + L Sbjct: 217 EGSQIAAILARPVPGSQVLDLCAGAGGKTLEFAALMDNKGQLYAHDSDIRRLKPMHERLA 276 Query: 285 RLHLYAEDIIE---MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R + + + + + D VLVDAPC+ TGT RR+PD W + + Sbjct: 277 RAGVRNVQVRSPRGAEDVLHDLEGRMDLVLVDAPCTGTGTWRRNPDAKWRVRPGALAQRT 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q K+L + +V+PGG + + CSL +++ V+ +L + P + Sbjct: 337 AEQAKILEEAAHYVRPGGRLAYVTCSLLDEENGAQVRALLSKREDFHVVPPNETVLSLGA 396 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 R + +G DGFF ++R Sbjct: 397 HGQALADAALTSR----EGILMTPRRTGTDGFFVSVMKR 431 >gi|241663918|ref|YP_002982278.1| Fmu (Sun) domain-containing protein [Ralstonia pickettii 12D] gi|240865945|gb|ACS63606.1| Fmu (Sun) domain protein [Ralstonia pickettii 12D] Length = 465 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 92/446 (20%), Positives = 165/446 (36%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + L R++ ++ LR Sbjct: 59 KVLARLLHFAAPADMVVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 112 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S + L L L A + + A+ + +R Sbjct: 113 SGTGPARRRLVLL--------GLLQTAGREAIAPFLNPAEAEWLDRW------------- 151 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + + +P+W + L +G E A++ A ++P +DL V + + Sbjct: 152 ENRDRAALAARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGERDAV 211 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL Sbjct: 212 LATLAEAGIEGVAAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 271 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGKT + + S ++ A DVS++RL L L R L +D+ Sbjct: 272 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLSNLGPRLARSGLSNVHPGRIDSEH 331 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 332 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 391 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V++ CS+ +++++VV++ L + V + + I + M ++ + Sbjct: 392 PGGRLVYATCSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGP----YLELY 447 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 448 PH--------THQTDGFFAAVLERRA 465 >gi|332520891|ref|ZP_08397351.1| Fmu (Sun) domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043421|gb|EGI79617.1| Fmu (Sun) domain protein [Lacinutrix algicola 5H-3-7-4] Length = 406 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 85/456 (18%), Positives = 156/456 (34%), Gaps = 66/456 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L + + ++ RD+ V +R+ Sbjct: 1 MRLHRNLCFATVDGLLLIFNEGNYADKVVQQLLKRDKRWG--SRDRGFVAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + R R+ V + + + Sbjct: 59 RLYAEIAN--VKEPFSRDDIW-----RLFA-----------------VWATLKGIKLPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N+ R++ EL + P+W E G+ + A + L Sbjct: 95 KYFENTPTRKIKGRFDELSKIRKIKESFPDWIDELAAKELGENLWNKEAAALNEQADVIL 154 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 E +L + T I+ ++ + F +G + VQDAS+ Sbjct: 155 RTNTLKTTKEKLKSELFDLDFDTEEIKGYPDALKLKERANVFTTDAFKKGWFEVQDASSQ 214 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + + + V+D CA GGKT + + + +V A+D+ + +L +L+ R Sbjct: 215 LVAEFLDVKSGMKVVDTCAGAGGKTLHIAALMENKGQVIAMDIYENKLRELKRRAKRAGA 274 Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ +D+ K D VL+DAPCS G +RR+PD W + + + QR+ Sbjct: 275 HNIEMRTIDSTKPIKKLYDKADRVLIDAPCSGLGVLRRNPDAKWKLEASFLDRIKNTQRE 334 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L VKPGG +V++ CS+ +++E V+ L Sbjct: 335 ILSSYSRMVKPGGKLVYATCSILPSENQEQVKHFL----------------TSESGKDFT 378 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 E +KI SG DGF+ L R Sbjct: 379 FVKE----------KKILSHESGFDGFYMALLERKT 404 >gi|207723586|ref|YP_002253985.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia solanacearum MolK2] gi|206588788|emb|CAQ35751.1| cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia solanacearum MolK2] Length = 406 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 92/445 (20%), Positives = 171/445 (38%), Gaps = 55/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L+ ++ ++ + + + L R++ ++ LR S Sbjct: 1 MLARLLHFAAPADMVVSQYFREHS--ELGHRERGIIAEAAFAVLRRKVEF----GQFAES 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + ++L+ + + Q A + + + + +R ++ RV Sbjct: 55 G---SGPARRRLVLLGLQQ-----TAGREAIAPFLTPPEAEWLDRWAIIDRTALAPRV-- 104 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWA 190 + +P+W + L +G+ A++ A ++P +DL V + E Sbjct: 105 -----------RANLPDWLFDALVAQHGQAFAEALAQAWLAPAPLDLRVNTLKGEREAVL 153 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNLS 244 L + L + + P F G VQD + + QL Sbjct: 154 ATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGEM 213 Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CA GGKT + + S ++ ALDVS++RL L L R L +D+ Sbjct: 214 VVDFCAGAGGKTLAIGAAMRSTGRLYALDVSEKRLANLGPRLARSGLSNVHPARIDSEHD 273 Query: 302 CP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 274 AKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLKA 333 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ +++++VV++ L V + + I + M ++ + P Sbjct: 334 GGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEVLAAQKIPLEMGP----YLELYP 389 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + DGFFA L R Sbjct: 390 QV--------HQTDGFFAAVLERRA 406 >gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1] gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1] Length = 403 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 84/455 (18%), Positives = 155/455 (34%), Gaps = 66/455 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N L + + ++ RD+ V V +R+ Sbjct: 1 MRLHRNLCFAVIDGLHLIFNEGEYADKVIQQLLKRDKRWG--SRDRGFVAETVYSIVRYQ 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + + R R+ V + + Sbjct: 59 RLYAKIAN--VKAPYHRDDLW-----RMFA-----------------VWVTLKGIILPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 ++ R++ EL + IP+W E G+ + L Sbjct: 95 KYFTDTPTRKIKGRFDELSKIRKYRESIPDWIDELGVKELGEAEWTKEIAKQNEQADVIL 154 Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V KL + + T + ++ F G + VQDAS+ Sbjct: 155 RVNTLKTTKNDLQLKLQSEDIETEVLPNHPYALKLTERANVFKTEAFKNGWFEVQDASSQ 214 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + V+D+CA GGKT L+ + +V A+D+ + +L+KL+ R + Sbjct: 215 LVADFLDVKPGMKVVDVCAGAGGKTLHLAALMENKGQVIAMDIYESKLKKLKIRARRNGV 274 Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ +D+ K D +L+DAPCS G +RR+PD W + + Q + Sbjct: 275 HNIEMKVIDSTKPIKKLHGKADRLLIDAPCSGLGVLRRNPDAKWKLQPEFVQSIKQTQIE 334 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L Q VK GG +V++ CS+ ++++ V+K L Sbjct: 335 VLEQYSKMVKSGGKMVYATCSVLPSENQKQVEKFL------------------------- 369 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E T +K+ SG DGF+ L + Sbjct: 370 -TSESGKEFTFIKDKKVLAYKSGFDGFYMALLEKK 403 >gi|145589917|ref|YP_001156514.1| Fmu (Sun) domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048323|gb|ABP34950.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 465 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 31/320 (9%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTG 201 + +PEW + + G++ ++ A + P +DL E ++NA+ Sbjct: 128 RNNLPEWLWDAFGKYPGEDTREELAKALMHPALLDLRANTMKTTREELLVQMNALGGRYQ 187 Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I P+ ++ + GF G++ VQD + + L V+D CA G Sbjct: 188 AIPTPYAPDGVRIMGKPALQNTAGFKAGMFEVQDEGSQLLAYLLAPKRGEMVVDFCAGAG 247 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----L 306 GKT + + S ++ ALD S+RRL L+ R L + +D+ + K Sbjct: 248 GKTLAIGALMRSTGRLYALDTSERRLANLKPRQARSGLSNVHPVWIDSENDSKIKRLAGK 307 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 D VLVDAPCS GT+RR+PD+ W + + +++ Q +L +KPGG +V++ C Sbjct: 308 IDRVLVDAPCSGMGTLRRNPDLKWRQTPEGVLELNEKQMNILSSASRLLKPGGRLVYATC 367 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVP----LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 SL Q+++++ + L P E VP L + K W ++ P + Sbjct: 368 SLLPQENQQIAEAFLEKHPN-FEAVPAAEVLKPLFPKDKLPLGCSLDNPWWQLWPHI--- 423 Query: 423 IDGVSSGMDGFFAVALRRLI 442 G DGFF ++ Sbjct: 424 -----HGTDGFFGAVFQKKA 438 >gi|256544908|ref|ZP_05472279.1| sun protein [Anaerococcus vaginalis ATCC 51170] gi|256399407|gb|EEU13013.1| sun protein [Anaerococcus vaginalis ATCC 51170] Length = 426 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 173/453 (38%), Gaps = 51/453 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + K T +++ D + + L ++ +L Sbjct: 5 KLILDGLYRISYKNEKSTDIINEIAKKVE-------DISYITKNIYGVLENKLYLEYILA 57 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE------NRHFAK 122 + + + ++ +L + + I +LD +YA+V+ V K+ N Sbjct: 58 KLSKIKVKKLDKKVKLILLIGIYNIHFLDRKNYAIVNELVNLTKKVSFKSKSFVNAILRS 117 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + K + + +P W + L + YGK+ D+ + + + Sbjct: 118 YIRDEKNLSKINKENDEEFNSIKYSMPLWIIKYLNDSYGKDYTQKFLDSLNKERKLSIRI 177 Query: 183 K---FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIP 233 E + L + + P+S+ S F +G + +Q ++ Sbjct: 178 NKTKITREKLKNLLEDKGYIVEDSLISTLSLVIKNPKSLASTEEFKKGFFTIQSEASIKV 237 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 ++ N ++LD+CAAPG KT+ + + +K+ A D+S +L K+ N+ RL L Sbjct: 238 CEILNPKKNSNILDICAAPGTKTSFIAELCENSSKIIANDISFNKLSKINENIKRLGLKN 297 Query: 291 EDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I DA + FD +L D PCS G + R P++ + R +D++ + Q+ +L Sbjct: 298 IEITNFDASILKEEYKEKFDYILCDLPCSGLGVMDRKPEIRYNRTMEDVISLSKLQKNIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + ++K GGI+VFS C++ ++++ + + ++ + +N Sbjct: 358 DKAFLYLKTGGILVFSTCTIGSIENKDNFNYLSKK--KRLKNIKINGK------------ 403 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + DGFF ++ Sbjct: 404 ----------DYLEFNSFEDETDGFFLTKFEKI 426 >gi|264677013|ref|YP_003276919.1| Fmu (Sun) [Comamonas testosteroni CNB-2] gi|262207525|gb|ACY31623.1| Fmu (Sun) [Comamonas testosteroni CNB-2] Length = 417 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 91/449 (20%), Positives = 157/449 (34%), Gaps = 68/449 (15%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ---QL 85 + + ++ + L R++ + V LR +A+ S ++ ++ + Sbjct: 2 VSRFFRENRY--LGPRERATLAETVYTVLRKKLLFEAL--AHSGSGARERRLAILGFAAV 57 Query: 86 LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ----- 140 LR EQAK++ + ++ + + + EL Sbjct: 58 LR---------------------EQAKKEGKVKNKDGQDSETFIKAALTPQELKWLAACD 96 Query: 141 -------RIAGISIIPEWFKERLENF-YGKERVLAISDACISPLYIDLTVKFD-IETWAH 191 A +PEW E L+ LA S +PL + + D Sbjct: 97 GVKPEELMEAHRHNLPEWLVEPLKAQLGDGFWALAASMEQAAPLDLRVNTLNDKRSDLRK 156 Query: 192 KLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +L + ++ + F G VQD + + + V Sbjct: 157 ELEKAGIKAEPTPFSPIGLRVDGKPALAKVDAFNRGAIEVQDEGSQLLALMLDAKRGEMV 216 Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDA 298 +D CA GGKT + + + ++ A DVS RL+ L+ L R L E D Sbjct: 217 VDFCAGAGGKTLAIGAAMRNTGRLYAFDVSGHRLDALKPRLARSGLSNVHPAAIAHERDE 276 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 D VLVDAPCS GT+RR+PD+ W + + + Q +L VK G Sbjct: 277 RVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSVKAVQELTQKQAAILESSARLVKAG 336 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-----WI 413 G ++++ CS+ +++E + + + P V L I L G ++ Sbjct: 337 GRLIYATCSILPEENEAIAEAFSAAHPEFVPLDAGEVLEQLKIADGDKLCSGGDEGRRYL 396 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLI 442 R+ P DGFFA + Sbjct: 397 RLWPH--------QHETDGFFAAVWVKKA 417 >gi|260654218|ref|ZP_05859708.1| putative Sun protein [Jonquetella anthropi E3_33 E1] gi|260630851|gb|EEX49045.1| putative Sun protein [Jonquetella anthropi E3_33 E1] Length = 438 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 109/456 (23%), Positives = 183/456 (40%), Gaps = 52/456 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +LS V + + L D L D+ L ++V LR + Sbjct: 5 EAALKVLSAVEKGGFASQKLRD--------LPLDAPDRTLAASLVYACLRRAELWRFLAF 56 Query: 69 FVLISSLPRKKYSLQQLLRVSVA---QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L S++ L++ A ++ V +V+ V+ KR +R AK+VN Sbjct: 57 EYLRPKPEGFSPSVRLALQLGAAGALELKNFAVPA--LVNGLVDWTKR--SDRGGAKVVN 112 Query: 126 SILRRVSREKIELLQR---------IAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +++RR+ + L++ + + +P W YG E A+ SP+ Sbjct: 113 AVMRRLLDQGPARLEQLGNDRSLEARSLLFGVPLWAARLFTRDYGSETGDALLKTQQSPV 172 Query: 177 YIDLTVKFD--IETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDA 228 + L V E L A L + + LPG+ G+ Q Sbjct: 173 ALALRVSRSDLRERVLASLGASGWNASPSDLLSESIRLETTALPPCLPGYDAGLVTPQSE 232 Query: 229 SASIPVQLFGTLNNL-SVLDLCAAPGGKTAQLIVSGAKVTA--LDVSKRRLEKLRCNLDR 285 ++ +LD+CA K+ ++ + ++T D+SK R+ L R Sbjct: 233 TSMSVAHEAAASCPEGRILDMCAGRAVKSGAVLQANVRLTLEGWDLSKPRVLAGMKELTR 292 Query: 286 LHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L+L + DA + P++ DA+LVDAPCS +GT RRHP+ W D+ ++ Q Sbjct: 293 LNLTGRAKLRTGDALELVPEEAPDAILVDAPCSGSGTWRRHPEAKWRLSESDLASNSALQ 352 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R+LL + VKPGG V++S CSL ++E VV +V+ +P+ VE + + + Sbjct: 353 RRLLDRACRLVKPGGTVIYSTCSLFAAENEAVVSQVIEETPMTVEPLSPSFKFDSLRSPG 412 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + DGF+ V LRR Sbjct: 413 AV----------------AFPSTPWNDGFYLVKLRR 432 >gi|222147270|ref|YP_002548227.1| Sun protein [Agrobacterium vitis S4] gi|221734260|gb|ACM35223.1| Sun protein [Agrobacterium vitis S4] Length = 428 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 88/452 (19%), Positives = 157/452 (34%), Gaps = 49/452 (10%) Query: 8 RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL + +LS + +R + L F D+ + IV LR + Sbjct: 6 RLAGAIEVLSDIETRRRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMKLSHAYI 63 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D S Y++ LLR + + + A + + Sbjct: 64 MD---DDSPAALGYAV--LLR------------QWGMAPES--LAADLDGDSFAPAPLTQ 104 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 + IPEW E +G + + A +DL Sbjct: 105 AQSAAFSSRTLEDAPQFVQGDIPEWVVPSFEAVFGADWLREA-QALAVRPSLDLRANTLK 163 Query: 187 ETWAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIP 233 L A+ ++ + GF +G + VQD + I Sbjct: 164 ANRDKVLKALSHTQARPATISPIGIRIEPGEGPSRLPNVTAELGFQKGWFEVQDEGSQIV 223 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L VLD CA GGKT + + + +V A D ++RL + L R + Sbjct: 224 SALVEPGEGHQVLDFCAGGGGKTLAMAAAMGNKGQVHAYDSDRKRLAPIIERLKRAGTHN 283 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + A FD VLVDAPC+ TGT RR PD W ++ + Q++ L + Sbjct: 284 IQVHDRVAALQSLTGRFDKVLVDAPCTGTGTWRRRPDTKWRLTDRNLQERIEQQQQALTE 343 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID--MAMALS 408 ++V+ GG +++ CS+ ++++ ++ + P +P+ + +A +S Sbjct: 344 AATYVRSGGELIYVTCSVLPEENDRQIEAFTAAHP-QFSPMPMLERWTGLFGGSVAKPIS 402 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G + ++ DGFF + + Sbjct: 403 AHG-------KSLTLSPAATDTDGFFFCRMVK 427 >gi|120613161|ref|YP_972839.1| sun protein [Acidovorax citrulli AAC00-1] gi|120591625|gb|ABM35065.1| sun protein [Acidovorax citrulli AAC00-1] Length = 461 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 119/444 (26%), Positives = 181/444 (40%), Gaps = 47/444 (10%) Query: 25 LTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKY 80 + ++ + G S L+ D + V+A+ LR L R +A+ + PR Sbjct: 30 VDAVMAVRGGQSGTAALAAVDPVLRAGVQALFFAVLRQLGRAEALRAQLAPRRPKPRVDA 89 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE--- 137 L L + Q + +V+ AVE AKR R A VN+ LRR RE+ Sbjct: 90 LLCSTLALG-WQAGAAPYEPFTLVNQAVEAAKRHAATRGQAAFVNACLRRFLRERDALVA 148 Query: 138 -LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAHKLN 194 P W+ ERL + + + + K D+ + L Sbjct: 149 ATDSDPVARWNHPAWWIERLRKDHPGHWEQILRANNAQAPMALRIHRGKVDMAGYLAALE 208 Query: 195 AVMLPTGGIR----LKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVL 246 AV + + E P+ + LPGFA+G VQD +A L VL Sbjct: 209 AVGMKAWPATDTGLVLESPQPVQRLPGFADGRVSVQDLAAQQAAPLLLSGLDLGRPLRVL 268 Query: 247 DLCAAPGGKTAQLIVSG-----AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297 D CAAPGGKTA L+ VTAL++ R ++ L RL L A ++ D Sbjct: 269 DACAAPGGKTAHLLEYAGAGSPVHVTALEIDPLRSARIGETLQRLGLRA-QVLVADAGRP 327 Query: 298 ---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 C + FDA+L+DAPC+++G +RRHPDV W R DI + A Q +LL Sbjct: 328 EDWWQQACGGEPFDAILLDAPCTASGIVRRHPDVRWLRRPGDIAQLAAQQARLLSTLWPL 387 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 ++PGG +++ CS+ + + +++V+ L ++ L + G +R Sbjct: 388 LRPGGRMLYCTCSVFRAEGDDMVRSFLANNNDAHLLPSPGHLLPRDPGDG------GSVR 441 Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL 438 P DGFF L Sbjct: 442 ENPSRE---------HDGFFYALL 456 >gi|187922320|ref|YP_001893962.1| sun protein [Burkholderia phytofirmans PsJN] gi|187713514|gb|ACD14738.1| sun protein [Burkholderia phytofirmans PsJN] Length = 457 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 104/449 (23%), Positives = 175/449 (38%), Gaps = 27/449 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + V +L L + + + + V+ I T+R L + ++ + Sbjct: 16 AGQAVGAVRL-GAALPAALQSVFASAPEGNAAAA-RGAVQDIAYRTMRRLATAEWLIAKL 73 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVA----DYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L S+A ++ + + VVD AV +E LVN+ Sbjct: 74 VKKAPP---PHVGHVLACSLALLVDDEADAAYAPFTVVDQAVSAIGARREFAFAKGLVNA 130 Query: 127 ILRRVSREK----IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LR RE+ + P W+ + ++ + ++ + + Sbjct: 131 VLRSFLREREALLKDAQDDEVARWNYPAWWIDAVKRAWPDAWQSVLAAGNTQGPLTLRVN 190 Query: 182 VKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 + ++T + A P + +PGF +GV VQDA A + L Sbjct: 191 ARHSTVDAYLQTLQNHHIAASKVGDYAVKLATPMPVDRIPGFNDGVVSVQDAGAQLAAPL 250 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE---- 291 + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 251 LDARDGMRVLDACAAPGGKTGHLLELANLQLVALESDASRARRIGENLQRLKLEAEVRIG 310 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 311 DAGAPAKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVTEQRRILDAL 370 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VKPGG +++ CS+ ++ E Q V L S A A + G Sbjct: 371 WPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL-DAPGQLLPSAARAPADTSAG 429 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P DGFF ++ Sbjct: 430 SHAGQPAEDSAGANSDH--DGFFYARFQK 456 >gi|73542425|ref|YP_296945.1| Fmu [Ralstonia eutropha JMP134] gi|72119838|gb|AAZ62101.1| Fmu [Ralstonia eutropha JMP134] Length = 425 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 100/444 (22%), Positives = 161/444 (36%), Gaps = 51/444 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 LL VM ++ + +++ L R++ ++ V LR Sbjct: 15 RLLGKVMLFARPADAVVSYYFRENS--KLGHRERGIIAEAVYAVLRRRVEF----GQFAE 68 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S A + L + F + Sbjct: 69 SG---------------------TGSASRRLALLGLAATLGRDTLTPFLYPDEAEWLDRL 107 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET---- 188 + +PEW + L +G+ A+ DA + P +DL V T Sbjct: 108 TTIERSSLSPRVRANLPEWLFDNLVARHGEAFTSALGDAWLRPAPLDLRVNLIKTTREAA 167 Query: 189 ----WAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 A L A P ++ + + LP F G+ VQD + + L G Sbjct: 168 LAELEAAGLRAEPTPMAPAGIRMQGKPALNQLPMFVNGLVEVQDEGSQLLCSLVGPKRGE 227 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296 V+D CA GGKT + S ++ A DVS++RL L+ L R L + E Sbjct: 228 MVVDFCAGAGGKTLALGVAMRSTGRLYAFDVSEKRLANLKPRLARSGLSNVHPVLIDSER 287 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 DA D VLVDAPCS GT+RR+PD+ W ++ + +++ Q +L VK Sbjct: 288 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQNPESVLELTAKQSAILEAAARLVK 347 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG VV++ CS+ + ++E +V+ L P + + I++ + + Sbjct: 348 GGGRVVYATCSVLEAENEAIVRDFLAKHPTFRLVPATEVLAEQKIEVPALQTEGDMFALY 407 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFFA L R Sbjct: 408 PHL--------HQTDGFFAAVLER 423 >gi|86130339|ref|ZP_01048939.1| NOL1/NOP2/sun family protein [Dokdonia donghaensis MED134] gi|85819014|gb|EAQ40173.1| NOL1/NOP2/sun family protein [Dokdonia donghaensis MED134] Length = 402 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 91/458 (19%), Positives = 163/458 (35%), Gaps = 74/458 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N + L + +L RD+ + V +R+ Sbjct: 1 MKLHRNLVFAAVDALGMIFNDGEQADKVLRKVLKFDKRWG--SRDRSFIAETVYDIVRWK 58 Query: 61 PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + + +L R +++ LR + +V D Sbjct: 59 RLYSEIAEVKAPYSRPNLFRL-FAVWATLR-GI------EVPD----------------- 93 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + ++ RR+ EL + IP+W E E GK+ + A + Sbjct: 94 --WKQMEPIPTRRIKGRFDELSKIRKYKESIPDWMDEMGEKALGKKWGAEL-AALNTQAQ 150 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP---------ESIVSLPGFAEGVWWVQDA 228 + L T N + ++ + +++ + F G + VQDA Sbjct: 151 VVLRANSLKATVKEVRNTLADQDIDTKILDTHPDALELVERKNVFTSEAFKNGFFEVQDA 210 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ ++ + V+D CA GGKT L + + ++ A+D+ +L +L+ R Sbjct: 211 SSQKVARMLEVEPGMRVVDACAGAGGKTLHLAALMENKGQIIAMDIYAGKLRELKRRSKR 270 Query: 286 LHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + E+ + K D VL+DAPC+ GTI+R+PD+ W + + K Sbjct: 271 AGAHNIETREITSTKVFKKLYNSADRVLIDAPCTGLGTIKRNPDLKWKLQPEFVDKVVQR 330 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L VK GG +V++ CS+ ++++E VQ L + Sbjct: 331 QADILQNYSKIVKDGGKMVYATCSILPRENQEQVQAFLAT----------------EQGQ 374 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 L E E + SG DGF+ L R+ Sbjct: 375 KFQLEKE----------ETVSPAKSGYDGFYMALLSRK 402 >gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304] gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304] Length = 437 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 102/447 (22%), Positives = 182/447 (40%), Gaps = 41/447 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ +L+ V R RIS+ + G +++ + V A TL+ L ID L Sbjct: 15 EIAAKVLAEVERSRISVKSAVQKLAGGFDYKV-----RGSVHAYSVETLKRLNAIDYFLK 69 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L + LLR++V ++ Y V D AV A+ + V + Sbjct: 70 STLKK-FDGLDPFTRNLLRIAVYEMKYKGVHPALATDSAVRIARE-RGKASLVNAVLRKV 127 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185 ++ + L+ ++ PEWF + G++ L + A + + V Sbjct: 128 EKLDIQAEGRLKELSLTYFHPEWFVKYAIELLGEDGALKLMKANLRNPPTYVRVNELKGS 187 Query: 186 IETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +E+ L R+K + SL +EG + +QD ++ Sbjct: 188 VESVREYLEKNGVILEETFLDEVFRVKGYEKHPASLDWHSEGKYVIQDLASCFVSHALNP 247 Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 V+DL AAPG KTA + + + ++ A+D S R+ ++R L +L + +I Sbjct: 248 SPGDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMRSKLKQLGVKNVEIKLG 307 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D + + D LVDAPCSSTG P+V WT D + QRK++ ++ Sbjct: 308 DGCVF--ECEADKALVDAPCSSTGNYASQPNVKWTFDERKFRATMKVQRKMIANA---LR 362 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL---SPEGWI 413 VV++ CS+ +++EE +L++ +++PL S + + + + E + Sbjct: 363 NADEVVYATCSITFEENEEN---LLKT---GAKILPLPSPFGRGVREFRGVLFRDWEKVV 416 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 R P + GFF L R Sbjct: 417 RSFPHL--------HDTAGFFISKLTR 435 >gi|91781434|ref|YP_556640.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans LB400] gi|91685388|gb|ABE28588.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans LB400] Length = 457 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 108/450 (24%), Positives = 176/450 (39%), Gaps = 29/450 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + V +L L + + ++ + V+ I T+R L + ++ + Sbjct: 16 AGQAVGAVRL-GAALPAALQSVFVSAPEGSVAAA-RGAVQDIAYRTMRRLATAEWLIAKL 73 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L S+A ++ + A + VVD AV +E LVN+ Sbjct: 74 VKKAPP---PHVGHVLACSLALLVDDEANAAYAPFTVVDQAVSAIAARREFAFAKGLVNA 130 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LR RE+ P W+ + ++ + ++ + L V Sbjct: 131 VLRTFLRERETLLSAAQADEVARWNYPAWWIDAVKRAWPDAWQSVLAAGNTQGP-LTLRV 189 Query: 183 KFDIET-------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T ++ A P + +PGF +GV VQDA A + Q Sbjct: 190 NARRSTVDAYLQLLQNQHIAASKAGDYAVKLATPMPVDRIPGFTDGVVSVQDAGAQLAAQ 249 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291 L G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 250 LLGVHDGMRVLDACAAPGGKTGHLLELANLQLVALESDASRARRIGENLQRLKLEAEVRI 309 Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 310 GDAGTPAKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVAEQRRILDA 369 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 VKPGG +++ CS+ ++ E Q V L S Sbjct: 370 LWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRLDAPGQLLPSVARAPADASAG 429 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E G +S DGFF ++ Sbjct: 430 SHA---GQSAEDSAGANSDHDGFFYARFQK 456 >gi|295133869|ref|YP_003584545.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia profunda SM-A87] gi|294981884|gb|ADF52349.1| ribosomal RNA small subunit methyltransferase B [Zunongwangia profunda SM-A87] Length = 411 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 86/458 (18%), Positives = 161/458 (35%), Gaps = 74/458 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L + + +++ RD+ + +R+ Sbjct: 1 MRLHRNLVFATVDALLEIFNEGQYADKVIEKTLKRDKRWG--ARDRSFIAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKY----SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + R+ ++ LR +A + D+ ++ Sbjct: 59 RLYAEIAE--VKEPFSRENAFRLFAVWATLR-GIA------LPDWKQIEE---------- 99 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + RR+ L + IP+W E G++ A Sbjct: 100 ---------TPTRRIKGRFDALSKIRKFRESIPDWLDELGVAELGEDIWEKEIGALNKQA 150 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQD 227 + + V DI+T KL T ++ +I F G++ VQD Sbjct: 151 PVIIRVNTLKTDIQTLQQKLKDEGFETINLKDYPYALQLVERANIFKTESFQNGLFEVQD 210 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ + V+D CA GGK+ L + + +V ALD+ +L++L+ Sbjct: 211 ASSQLVADFLDVKPGDRVVDTCAGAGGKSLHLAALMENKGQVIALDIYGNKLKELKRRAK 270 Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + +D K D VL+DAPCS G + R+PD W + + + + Sbjct: 271 RAGAHNIETRVIDNNKAIKKLHGKADKVLIDAPCSGLGVLSRNPDAKWKLEPEFLDRIRK 330 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q++++ Q VK G +V++ CS+ +++ V+ L S +K I+ Sbjct: 331 TQQEIIRQYCKIVKKEGKMVYATCSVLPSENQLQVKDFLASEEGK---------DFKLIE 381 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LS E +G DGF+ L + Sbjct: 382 DRKILSSE-----------------TGYDGFYMALLEK 402 >gi|227824162|ref|YP_002828135.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] gi|227343164|gb|ACP27382.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234] Length = 429 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 81/447 (18%), Positives = 150/447 (33%), Gaps = 45/447 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L + +++ + L F D+ + IV LR ++D Sbjct: 10 AIDVLDDIEKRKRPVADALKDWGLSHRFAG--SGDRAAIGNIVYDALRMKLSHAYLMDS- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ + A+ +++ + ++ + Sbjct: 67 -----DSAAALGHAVM-------------YRQWGFTPDKLAEELADDKFAPQAPSAEMMT 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 + + IPEW + E + + + A +DL V + Sbjct: 109 AFGARRIDDAPLNVQGDIPEWTQASFEENFSDDWLDEA-RALAGRPTLDLRVNTLKASRD 167 Query: 188 TWAHKLN---AVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF 237 L A ++ ++ + F +G + VQD + I L Sbjct: 168 KVLKSLERSGAEPAAIARHGVRIPAGEGASRLPNVTAEISFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 FPREGEQVLDYCAGGGGKTLAMSAAMNNKGQVHAYDTDRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D VLVDAPC+ TGT RR PD W ++ + Q + L F Sbjct: 288 ESAEALASLAGRCDRVLVDAPCTGTGTWRRRPDTKWRLTQKNLEERLAQQEEALAGAAQF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V+PGG +++ CS+ +++E V +P E++ + ++ Sbjct: 348 VRPGGHLIYVTCSVLPEENEAQVYGFCEDNP-EFEILSAADTWAALFGTDKPQPWSADMK 406 Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL-RR 440 + S+G DGFF + R+ Sbjct: 407 T-----VTLTPASTGTDGFFFCLMGRK 428 >gi|162147596|ref|YP_001602057.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter diazotrophicus PAl 5] gi|161786173|emb|CAP55755.1| putative ribosomal RNA small subunit methyltransferase B [Gluconacetobacter diazotrophicus PAl 5] Length = 413 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 95/437 (21%), Positives = 166/437 (37%), Gaps = 45/437 (10%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 R + + + + + + D+ + A V LR + LD + Sbjct: 6 RRPADAVANAFFRERRY--IGGGDRRAISARVWTVLRHWRHLAWWLDRA------GAAAT 57 Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR-VSREKIELLQ 140 + L ++A + + ++ + + + R + + Sbjct: 58 PRARLIAALALM-----PQPGEAPQDLFVSQDRYAPQPLSAAERDLATRLRGQAMVHPDM 112 Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK-------- 192 A +P+W RLE +G + + A A +DL V T A Sbjct: 113 PRAVRLEVPDWLLPRLEETFGAD-LDAEVAALAGEATLDLRVNLLKTTRAEAARLLAADG 171 Query: 193 LNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + A L+ + + + F G+ +QD + I V + VLD CA Sbjct: 172 IMAEPTGLSPWGLRVPGRQPVTATAAFKSGLVEIQDEGSQIVVAAADARPGMRVLDYCAG 231 Query: 252 PGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII---EMDAFDYCPKK 305 GK A + + + A DVS+ RLE L R ++ + D + Sbjct: 232 AAGKTLGMAMTMENRGHIVACDVSEPRLEGAVRRLRRAGVHNAERHLLVPGDRWARRRAA 291 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD VLVDAPC+ TGT RR+PD D+ + Q +L + V+PGG +V++ Sbjct: 292 SFDRVLVDAPCTGTGTWRRNPDARLRLTEQDLAELMAKQADILATASALVRPGGRLVYAT 351 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ ++++++ + LR+SP + D+A L+ +G I ++P Sbjct: 352 CSILREENQDRIASFLRASPHFRRAETVP-------DLAPDLAQDGMIALSP-------- 396 Query: 426 VSSGMDGFFAVALRRLI 442 + G DGFFA L R Sbjct: 397 LRHGTDGFFAAILERTA 413 >gi|319407594|emb|CBI81244.1| SUN-family protein [Bartonella sp. 1-1C] Length = 428 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 74/438 (16%), Positives = 148/438 (33%), Gaps = 25/438 (5%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + L F +S D+ + IV LR + +D Sbjct: 8 QAAIDILQEIETRYRPASEALKDWGFSHRFAGVS--DRAAIGTIVYDALRRRYSLQWRMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +++ ++ ++ L + V A + + L Sbjct: 66 S----------NNIRDVVFGTLFDSGMLTIEQVDKVLEGDRFAPQLLAPQQRKAWQQRQL 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185 + + + P + ++ + ++ + L Sbjct: 116 VNAPDYIRADIPQWCKAHLYPLFVDNWIKEAAALATRPPLDLRVNSLKATPKKVLKALEK 175 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + L I E ++ + P F +G + +QD + + L + + Sbjct: 176 TKVKSFSWFQQALRIEPIEKFERHPNVQAEPAFQKGYFEIQDLGSQLVSYLIEAKAGMQL 235 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT A + + ++ A D K RL + L R + Sbjct: 236 LDYCAGAGGKTLALAANMENRGQIYAYDSEKIRLAPIFNRLQRAGIRNVQPRMYKEELKS 295 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 D VL+D PCS TGT RR PD W + + Q +L + + ++KP G +V Sbjct: 296 LIGQMDIVLLDTPCSGTGTWRRRPDAKWRLTLQKVKQRQEEQFAILNEALIYIKPRGRLV 355 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL ++E + + L+ + P+N + ++ + Sbjct: 356 YITCSLFNDENEAQISRFLQKHSNFL---PINMQKLWHRHFSSSI----MQPAFSNYGLT 408 Query: 423 IDGVSSGMDGFFAVALRR 440 + ++ DGFF L++ Sbjct: 409 LSPAATKTDGFFLSILQK 426 >gi|325955242|ref|YP_004238902.1| Fmu (Sun) domain protein [Weeksella virosa DSM 16922] gi|323437860|gb|ADX68324.1| Fmu (Sun) domain protein [Weeksella virosa DSM 16922] Length = 403 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 75/441 (17%), Positives = 157/441 (35%), Gaps = 65/441 (14%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L+ V + L+ + RD+ + V +R+ +++ + Sbjct: 14 IDTLAEVFFEGKYADKELERVLKSNRSWG--ARDRAFIAETVYDLVRWKR----LVEGSM 67 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 L R V I+ + ++ + + + + + Sbjct: 68 SKPLSRDTLWEF----VGTWFIMNM---------------AEEQHLPSWDEFRHLNPKEI 108 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETW 189 + + + A P+W E G++ + + + T+K D ++ Sbjct: 109 IKRHHQSAKNPAVAQSFPDWLYALGEKELGEQWIKEVEALNQQAPTVIRVNTLKIDRKSL 168 Query: 190 AHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +L + T + + +I F G + VQDA + + Sbjct: 169 HKELKENKIKTHILSKFQDALELDEKMNIFRTDAFQNGFFEVQDAGSQLIAPFLRVEPGQ 228 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AF 299 V+D CA GGKT L + + ++ A+D+ + +L++L+ R ++ ++ Sbjct: 229 RVIDACAGAGGKTLHLASLMKNKGQIIAMDIHEWKLKELKKRAKRNNVQNVQTRLIESKT 288 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 ++ D +L+DAPCS G ++R+PD W + I Q K+L VK GG Sbjct: 289 IKRMEESCDRLLIDAPCSGLGVLKRNPDAKWKLQPEFIENIKNEQAKILDSYSKMVKKGG 348 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++V++ CS+ +++E V+K L + P ++ Sbjct: 349 LMVYATCSILPSENQEQVEKFLANHPEYTLILD--------------------------- 381 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 ++ G DGF+ + R Sbjct: 382 -KQYLPSEYGYDGFYMALMER 401 >gi|167736565|ref|ZP_02409339.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 14] gi|167822184|ref|ZP_02453655.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 9] gi|226194606|ref|ZP_03790201.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei Pakistan 9] gi|254182248|ref|ZP_04888845.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1655] gi|254188214|ref|ZP_04894726.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei Pasteur 52237] gi|254260319|ref|ZP_04951373.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1710a] gi|157935894|gb|EDO91564.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei Pasteur 52237] gi|184212786|gb|EDU09829.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1655] gi|225933307|gb|EEH29299.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei Pakistan 9] gi|254219008|gb|EET08392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1710a] Length = 469 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|237654726|ref|YP_002891040.1| sun protein [Thauera sp. MZ1T] gi|237625973|gb|ACR02663.1| sun protein [Thauera sp. MZ1T] Length = 435 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 114/448 (25%), Positives = 182/448 (40%), Gaps = 49/448 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L++ V+ +LT + + + + VR + TLR R DA+ Sbjct: 21 AR--ATELVAGVID-GANLTDVFERMQAGHPEW--PEGTRGAVRDLAWSTLREFGRGDAI 75 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L +L S P ++ LL V++ ++ + VVD AV LVN Sbjct: 76 LSRLLHSPPP---VEIRALLLVALQRLTQRPEQAHTVVDQAVGATA--VAMPGLRNLVNG 130 Query: 127 ILRRVSREKIELLQR----IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LR R + E P W+ ER+ + + + + A + + L V Sbjct: 131 VLRNALRRQPEWQGWIEAEPEARHAFPAWWVERVRSAHPQAW-QDLLAAGNTRPPMALRV 189 Query: 183 KFDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T A + + P ++ LPG+AEG VQDA A Q Sbjct: 190 NPRRATLAEVEAELAAAGLEFRRLDNDALVLARPLAVARLPGYAEGRLSVQDAGAQWAAQ 249 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--D 292 L VLD CAAPGGKTA + + A + AL++ R ++ NLDRL L AE Sbjct: 250 LLDVRAGERVLDACAAPGGKTAHILERADADLLALELDPLRAGRVARNLDRLGLRAELKV 309 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + FD +L D PCS++G +RRHPD+ W R DI A Q ++L Sbjct: 310 ADCRRLAAWWDGRPFDRILADVPCSASGVVRRHPDIKWLRRDSDIANFAAQQAEILEALW 369 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + PGG +++ CS+ +++ V + E +P+ + Sbjct: 370 RTLAPGGTMLYVTCSVFDEENAGQVARFCVRH-ADAERLPIRGSS--------------D 414 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ P DGF+ LR+ Sbjct: 415 LQLLPCA---------DHDGFYYALLRK 433 >gi|126663950|ref|ZP_01734944.1| putative sun protein [Flavobacteria bacterium BAL38] gi|126623899|gb|EAZ94593.1| putative sun protein [Flavobacteria bacterium BAL38] Length = 405 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 84/461 (18%), Positives = 161/461 (34%), Gaps = 74/461 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L + + ++ D+ V + +R+ Sbjct: 1 MRLHRNLVFTTIDSLMAIFNEGEYADKVVARALKKDKRWG--SHDRKFVAETIYEIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + R + +LR Sbjct: 59 RLYVEIAE--VKEPFDRDNIWRIFAVWAVLR--------------------------GYT 90 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + + +RR+ + EL + IP+W E G+E A Sbjct: 91 LPDWKYFEETPVRRIKGKFDELTKTRKFKESIPDWMDELGVKELGEEIWTKELAAQNEQA 150 Query: 177 YIDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 + L V E L + + T + + ++ F +G++ VQD Sbjct: 151 KVILRVNRLKTTKEKLRAILMDLDIVTEFNKEYPDALILTERANVFLTDAFKDGLFEVQD 210 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ + + V+D CA GGKT L + + ++ A+D+ + +L++L+ Sbjct: 211 ASSQLVAYFLDVQPGMRVVDTCAGAGGKTLHLASLMENKGQLIAMDLYESKLKQLKIRAK 270 Query: 285 RLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + +IE + D VL+DAPCS G ++R+PD W + I Sbjct: 271 RNGAFNIEPRVIESTKTIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKLQPEFIENIKK 330 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L VKPGG +V++ CS+ +++E ++ L S + Sbjct: 331 IQAEVLENYSKIVKPGGKLVYATCSVLPSENQEQIKHFL------------------STE 372 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + +++ +K+ SG DGF+ L R I+ Sbjct: 373 IGKEFT---FVQ-----DKKVLAHESGFDGFYMALLERKIK 405 >gi|325287453|ref|YP_004263243.1| Fmu (Sun) domain-containing protein [Cellulophaga lytica DSM 7489] gi|324322907|gb|ADY30372.1| Fmu (Sun) domain protein [Cellulophaga lytica DSM 7489] Length = 403 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 158/456 (34%), Gaps = 68/456 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L+ + + +++ RD+ + +R+ Sbjct: 1 MKLHRNLVFAVIDALNLIFNEDEYADKVVEKVLKFDKRWG--SRDRGFIAETTYEIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + + R L R+ AV + E + Sbjct: 59 RLYTEIAE--VKAPYSRP-----NLFRI-----------------WAVWAVLKGIELPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 ++ + RR+ EL + IP+W E E G ++ +A + L Sbjct: 95 KQIEPTPTRRIKGRFDELSKIRKFKESIPDWIDEVGEKALGDKKWTKEINALNKQAEVVL 154 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASAS 231 V L + I+ ++ F +G++ +QDAS+ Sbjct: 155 RVNTLKTTKANLQKALLEENIVANPIKGYPDALTLTERANVFRTEAFKKGMFEMQDASSQ 214 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V+D CA GGKT + + + ++ ALD+ +L++L+ R Sbjct: 215 LVGHFLDVKPGQRVVDTCAGAGGKTLHIAALMENKGQLIALDIYGNKLKELKRRAKRDGA 274 Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + E+D+ K D VL+DAPC+ G ++R+PD W + + K Q++ Sbjct: 275 HNIETREIDSTKVIKKLYNSADRVLIDAPCTGLGVLKRNPDAKWKLQPEFLDKITKTQQE 334 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405 +L VK GG +V++ CS+ Q++ + + L + LV N Sbjct: 335 ILQSYSRIVKSGGKLVYATCSILPQENNDQIIAFLASEAGKDFTLVKENK---------- 384 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + SG DGF+ L + Sbjct: 385 -----------------VYASDSGYDGFYMTLLEKK 403 >gi|76812251|ref|YP_331765.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1710b] gi|76581704|gb|ABA51179.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1710b] Length = 519 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 88 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 145 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 146 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 202 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 203 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 261 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 262 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 321 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 322 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 381 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 382 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 441 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 442 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 493 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 494 ---PAVGGSGESGRHVDHDGFFYARFQK 518 >gi|115525266|ref|YP_782177.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115519213|gb|ABJ07197.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris BisA53] Length = 434 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 92/466 (19%), Positives = 155/466 (33%), Gaps = 57/466 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ + +R+ + L F D+ + + LR Sbjct: 1 MTP--AARLSAAIEVIEAIETQRVPASQALKEWGTAHRFAG--SGDRAAIAGLTWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++ + +L++ D +R Sbjct: 57 RASSAYLMQADTGR------ARVLGMLKL----------ERGLGADAIGSLC---DGSRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + +++ + + PEW L +G++RV + A S +D Sbjct: 98 APEPLSAAEQAALASRTLADAPAPIAGDYPEWLDAELAAVFGEDRVAEAT-AMASRAPLD 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227 L V L ++ + S F +G VQD Sbjct: 157 LRVNTLKAKPEKMLASLAHLRATPTPWSPIGLRIELSADARNPGVQSEEDFIKGAIEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALFSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIFERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ DI D VL+DAPCS TGT RR+PD W + Sbjct: 277 RAGVHNADIRAPKGEADPLADIHGSADLVLIDAPCSGTGTWRRNPDAKWRMRPGALEVRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396 Q +L + + VKPGG + + CS+ ++ +++ L P L A Sbjct: 337 KDQAAVLERAVPLVKPGGRIAYVTCSVLSGENNGQIRQFLARHPDFAVLPAEQVASVLWD 396 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + A +SPEG + + +G DGFF L+R Sbjct: 397 KAEDFLAAALVSPEGLL---------LTPRRTGTDGFFVSVLKRTA 433 >gi|319899245|ref|YP_004159338.1| SUN-family protein [Bartonella clarridgeiae 73] gi|319403209|emb|CBI76768.1| SUN-family protein [Bartonella clarridgeiae 73] Length = 428 Score = 173 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 73/438 (16%), Positives = 148/438 (33%), Gaps = 25/438 (5%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + L F +S D+ + IV LR + +D Sbjct: 8 QAAIDVLKEIEMRYRPAGEALKDWGLSHRFAGVS--DRAAIGTIVYDVLRRRYSLQWRMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L+ L+ ++ + + + A + + L Sbjct: 66 S----------DNLRDLVFGTLFDSGMMTIEQVDKILEGDRFAPQLLAPQQRQAWQQRQL 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS---DACISPLYIDLTVKFD 185 + + + P + + ++ ++ + L Sbjct: 116 VNAPDYIRADIPQWCQAHLYPLFADNWIREAAALATRPSLDLRVNSLKATPEKVLKALEK 175 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + L I + ++ + P F +G + +QD + I L + + Sbjct: 176 TKVKSFSWFQQALRIEPIEKFKRHPNVQAKPAFQKGYFEIQDLGSQIVSYLIEAKAGMQL 235 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT A + + ++ A D K RL + L R ++ Sbjct: 236 LDYCAGAGGKTLALAANMDNRGQIYAYDSKKVRLAPIFNRLRRAGIHNVQPRAHKEELKS 295 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 D VL+D PCS TG RR PD W + + Q +L + + +++PGG + Sbjct: 296 LIGKMDIVLLDTPCSGTGIWRRRPDAKWRLTLQQLKQRQEEQFAILNEALIYIRPGGRLA 355 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + CSL ++EE + + L+ P+N + ++ + + Sbjct: 356 YITCSLFNDENEEQISRFLQKHSNF---SPINMQTLWHRHFSHSIIQP----VFSNYGLT 408 Query: 423 IDGVSSGMDGFFAVALRR 440 + ++ DGFF L++ Sbjct: 409 LSPAATKTDGFFLSILQK 426 >gi|86750301|ref|YP_486797.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2] gi|86573329|gb|ABD07886.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2] Length = 434 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 94/467 (20%), Positives = 152/467 (32%), Gaps = 59/467 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L++ + +RI L + D+ + +V LR Sbjct: 1 MTP--AARLSAAIDLIATIDGQRIPAAKALKEWGTAHRYAG--SGDRSAIAGLVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKEN 117 ++D + +LR+ + A Sbjct: 57 RASSAFLMDDDSAR------ARVLGMLRIERGL---------------TTEAIAALCDGG 95 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL- 176 R + + + PEW L +G ERV + Sbjct: 96 RFAPEPLTDAEHAALSGRTLDAAPPHVAGDYPEWLDGALAEVFGDERVAEAAAMASRAPL 155 Query: 177 YIDLTVKFDIET----WAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQ 226 + + L A P + L+ + + + P F +G VQ Sbjct: 156 DLRVNTLKGKPDKVLASLAHLGARATPWSPLGLRIELGADARNPGVQAEPDFIKGAIEVQ 215 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + + L V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 216 DEGSQLAALLSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIHERL 275 Query: 284 DRLHLYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R ++ DI D VLVDAPC+ TGT RR+PD W + Sbjct: 276 SRAGVHNCDIRAPKGPADTLSDIHASADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIR 335 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q ++L + + VKPGG + + CS+ ++ ++ + P P A Sbjct: 336 LKDQAEVLARAAALVKPGGRIAYVTCSVLPAENGAQIKAFTAAHPDFAVTPPAEVAATLW 395 Query: 401 IDMAMAL-----SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L S EG + + +G DGFF LR+ Sbjct: 396 DKAEAFLAATRTSSEGLL---------MTPRKTGTDGFFVSVLRKAA 433 >gi|27379096|ref|NP_770625.1| Sun protein [Bradyrhizobium japonicum USDA 110] gi|27352246|dbj|BAC49250.1| Sun protein [Bradyrhizobium japonicum USDA 110] Length = 433 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 101/466 (21%), Positives = 159/466 (34%), Gaps = 57/466 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L+ + R R+ L F D+ + +V LR Sbjct: 1 MTP--AARLSAAIELIDTIERDRVPAAKALKEWGTAHRFAG--SGDRAAIAGLVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D L +LR+ +D A A + A Sbjct: 57 YASSAFLMDADTAR------ARLIGMLRL----ERDMDAATMAALFDGSRFAPAPLTEAE 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A L + LR A PEW L +G++R + +D Sbjct: 107 QAALSHRSLRDAPA---------AIAGDYPEWLDPHLAKVFGEDRAAEAAAMASRAP-LD 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227 L V L A+ I + F +G VQD Sbjct: 157 LRVNTLKSNRDKVLRALAHLHAKPTPWSATGLRIELSADARNPGIQAEEDFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + Q V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAAQFTAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDSDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ D+ D V++DAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNADVRTPKGEADPLADISATADLVVIDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396 Q ++L + + VK GG + + CS+ +++ E V+ + P + P A Sbjct: 337 RDQAEVLERAVPLVKLGGRIAYITCSVLAEENGEQVRAFIGRHPEFAVVPPEQIASVLWD 396 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + A SPEGW+ + +G DGFF L++ Sbjct: 397 KAEDFAKAALQSPEGWL---------MTPRRTGTDGFFVSVLKKTA 433 >gi|56477026|ref|YP_158615.1| tRNA and rRNA cytosine-C5-methylase sun [Aromatoleum aromaticum EbN1] gi|56313069|emb|CAI07714.1| tRNA and rRNA cytosine-C5-methylases sun [Aromatoleum aromaticum EbN1] Length = 447 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 180/445 (40%), Gaps = 49/445 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ L+ V+ +LT + + + VR + TLR R D VL + Sbjct: 35 AASLVETVL-GGANLTEAYERLLRANPGW--PDATRGAVRDLAWGTLRDYGRGDVVLRRL 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L LP ++L + ++ + + VVD AV+ A +VN +LR+ Sbjct: 92 LHKPLPVALHALLLVALH---RLEHRPDQAHTVVDQAVDAAA--VLAPGLKGVVNGVLRK 146 Query: 131 VSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 R++ E + A P W+ ++ + + A +A + L V Sbjct: 147 RLRDEHELAALVEADEAARYRHPAWWVAQVRAAWPGDW-EAALEAGNQRPPMALRVNRTR 205 Query: 187 E-------TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + + + P + SLPGFA G VQDA A + Sbjct: 206 ASVEAVEAELRNAGIGSRRLANDALVLDKPVPVASLPGFATGRVSVQDAGAQWAARWLDL 265 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD CAAPGGK A ++ + ++ AL++ +R++++R NL+RL L A ++ D Sbjct: 266 APGQRVLDACAAPGGKAAHILETKPVELVALELDPKRVQRIRDNLERLGLDA-QVLRADC 324 Query: 299 F---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + + FD +L D PCS++G RRHPD+ W R +D+ + A Q ++ + Sbjct: 325 RALDTWWDGRPFDRILADVPCSASGVARRHPDIKWLRRREDVRRFAAQQADIVDALWPTL 384 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 PGG +++ CS+ +++ + ++ P L ++ Sbjct: 385 APGGRMLYVTCSVFNEENTAQIARLSARHPDLERLEIDGRLE---------------RQL 429 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P ++ DGFF L + Sbjct: 430 LP---------ATDHDGFFYALLGK 445 >gi|167900770|ref|ZP_02487975.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei NCTC 13177] Length = 469 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|53717766|ref|YP_106752.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243] gi|53724953|ref|YP_101986.1| sun protein [Burkholderia mallei ATCC 23344] gi|67642457|ref|ZP_00441213.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei GB8 horse 4] gi|121599506|ref|YP_994096.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei SAVP1] gi|124385742|ref|YP_001028242.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei NCTC 10229] gi|126451630|ref|YP_001064449.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106a] gi|167003288|ref|ZP_02269077.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei PRL-20] gi|167717523|ref|ZP_02400759.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei DM98] gi|167813639|ref|ZP_02445319.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 91] gi|167843776|ref|ZP_02469284.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei B7210] gi|242316376|ref|ZP_04815392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106b] gi|254176710|ref|ZP_04883367.1| sun protein [Burkholderia mallei ATCC 10399] gi|254197181|ref|ZP_04903604.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei S13] gi|254203667|ref|ZP_04910027.1| sun protein [Burkholderia mallei FMH] gi|254208643|ref|ZP_04914991.1| sun protein [Burkholderia mallei JHU] gi|254360303|ref|ZP_04976573.1| sun protein [Burkholderia mallei 2002721280] gi|52208180|emb|CAH34111.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243] gi|52428376|gb|AAU48969.1| sun protein [Burkholderia mallei ATCC 23344] gi|121228316|gb|ABM50834.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei SAVP1] gi|126225272|gb|ABN88812.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106a] gi|147745179|gb|EDK52259.1| sun protein [Burkholderia mallei FMH] gi|147750519|gb|EDK57588.1| sun protein [Burkholderia mallei JHU] gi|148029543|gb|EDK87448.1| sun protein [Burkholderia mallei 2002721280] gi|160697751|gb|EDP87721.1| sun protein [Burkholderia mallei ATCC 10399] gi|169653923|gb|EDS86616.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei S13] gi|238523614|gb|EEP87051.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei GB8 horse 4] gi|242139615|gb|EES26017.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 1106b] gi|243061145|gb|EES43331.1| ribosomal RNA small subunit methyltransferase B [Burkholderia mallei PRL-20] Length = 469 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|167892276|ref|ZP_02479678.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 7894] Length = 469 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPPT---HVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLSAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|255034881|ref|YP_003085502.1| Fmu (Sun) domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947637|gb|ACT92337.1| Fmu (Sun) domain protein [Dyadobacter fermentans DSM 18053] Length = 410 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 82/456 (17%), Positives = 151/456 (33%), Gaps = 63/456 (13%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK S L + K +++ + RD+ + V +R+ Sbjct: 1 MKLHKGLVAASVEALQDIFIKNRQADRVVEQLLKSNKKWG--ARDRAFIAENVYGIVRWW 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL---YLD-VADYAVVDLAVEQAKRDKE 116 + + ++ + + V Q++ +LD + + E Sbjct: 59 RLVKYAAQ--IDKAVESDDFWR----IMGVWQLIRPVHLDGLEAPDSLPEWPEFVP---- 108 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISP 175 +N+ + V E L IP+W E G + +P Sbjct: 109 -------INAEI--VFERYREGLNTRKIAQSIPDWIDETGAAELGAAWDAELAALNHTAP 159 Query: 176 LYIDLT-----VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + V E + + + + ++ L F G + VQDA + Sbjct: 160 VVLRVNTLKTDVSTVRELLGADIAEPVPSVPEALVLKKRLNVSGLDSFKSGFFEVQDAGS 219 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 +SV+D CA GGK+ L + + A+D+ +L++L R Sbjct: 220 QWIAPYLDIREGMSVIDACAGAGGKSLHLAALLGNTGSILAMDIEHHKLQELERRAARNG 279 Query: 288 LYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +I D + D +L+D PCS G +RR+PD W + + K Q Sbjct: 280 VTNLSTMLINSDKIIENLAETTDRLLLDVPCSGLGVLRRNPDSKWKLKPEFLDKIRKVQA 339 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L VK GG +V++ CS+ +SEE V+ ++ V + Sbjct: 340 QILENYSKMVKKGGKMVYATCSILPSESEEQVRSFMKRHQADWNFVSEH----------- 388 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + G DGF+ L R Sbjct: 389 ----------------RSSPARDGFDGFYMALLERK 408 >gi|90424557|ref|YP_532927.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18] gi|90106571|gb|ABD88608.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18] Length = 433 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 96/460 (20%), Positives = 156/460 (33%), Gaps = 49/460 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L+ + +R+ L + D+ + + LR Sbjct: 1 MTP--AARLSAAIELIDAIDSQRVPAAKALKEWGTAHRYAG--SGDRAAIAGLTWDVLRR 56 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 ++D + + L A A R Sbjct: 57 RASSAWIMDSDTPRARVLGMLKLERGL--------------------EAEAIAALCDGGR 96 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + ++ + + PEW L +G +RV + A S + Sbjct: 97 FAPEPLSEAEQTALTSRTLDDAPPHVAGDYPEWLDGELAAVFGDDRVAEAT-AMASRAPL 155 Query: 179 DLTVKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQ 226 DL V L A P + L+ + PG F +G VQ Sbjct: 156 DLRVNTLKAKRDKVLGSLAHLGAKATPWSPLGLRIELGADARNPGIHSEEDFIKGGIEVQ 215 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNL 283 D + + L G V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 216 DEGSQLAALLSGAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDHDKRQLAPIYERL 275 Query: 284 DRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R ++ DI + D VL+DAPC+ TGT RR+PD W + Sbjct: 276 SRAGVHNCDIRTPKGPNDTLSDISGSADLVLIDAPCTGTGTWRRNPDAKWRMRPGALEVR 335 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L + + VKPGG + + CS+ Q++ + + P +VPL Sbjct: 336 LKDQVAVLDRAVPLVKPGGRITYVTCSVLGQENGAQIAAFMARHP-EFAVVPLEQTAAVL 394 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D A A + + + +G DGFF +++ Sbjct: 395 WDKAEAFLAAALVS---EQGLLMTPRRTGTDGFFVSVMKK 431 >gi|167917035|ref|ZP_02504126.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei BCC215] Length = 469 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ E + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAEWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|126439349|ref|YP_001057209.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 668] gi|167908993|ref|ZP_02496084.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 112] gi|217424987|ref|ZP_03456483.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 576] gi|254295711|ref|ZP_04963168.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 406e] gi|126218842|gb|ABN82348.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 668] gi|157805800|gb|EDO82970.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 406e] gi|217392007|gb|EEC32033.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 576] Length = 469 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|317050738|ref|YP_004111854.1| Fmu (Sun) domain-containing protein [Desulfurispirillum indicum S5] gi|316945822|gb|ADU65298.1| Fmu (Sun) domain protein [Desulfurispirillum indicum S5] Length = 417 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 80/413 (19%), Positives = 143/413 (34%), Gaps = 37/413 (8%) Query: 40 LLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA 99 L + R +V+ R L ++++L L + ++ LL +SV +I +L Sbjct: 34 KLPPEQRGNFREMVSGAFRQLLLLESILKASCDRPLRELEPFVKALLVLSVYRIYFLQDP 93 Query: 100 DYAVVDLAVEQAKRDKENRHFAKL------VNSILRRVSREKIELLQRIAGISIIPEWFK 153 DY VVD A D + + L + + ++ +P W Sbjct: 94 DYTVVDEANGLCAHDGQKSFVNGVLRNVTRYRKPLEHFIYHGKDTDRHLSERFSVPRWIV 153 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 E L G + ++ Sbjct: 154 EELRVSRGDYASILEGLNQPQKTFVRNGRYLRRAATVQDDLRQG---------------- 197 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVS 272 V + V G + VLD+ APG K L + D+S Sbjct: 198 ---------AAVISPGGFLSVLHLGVGSGHDVLDMGCAPGAKFFLLQELDPRSLTGCDIS 248 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 +RL + +RL L +I D + FD + +D PC+++GT +HP+ + Sbjct: 249 VKRLGTMYAEAERLGLPRPHLICGDGMSPPFADESFDRLYLDVPCTASGTFTKHPEGKFL 308 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 R + + QR LL + ++PGG++ ++ CS+ ++++ VV L Sbjct: 309 RTPQGLEELLVTQRALLARTFHLLRPGGVLCYATCSVFDRENDGVVAWFCAQESRARVLR 368 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P L+ + ITP ++ + G+DGF+ + R QP Sbjct: 369 PSVGLEDVDASCRHLLADS--LEITPHGFF-LNPAAHGLDGFYFSFIER-QQP 417 >gi|89891171|ref|ZP_01202678.1| tRNA and rRNA cytosine-C5-methylase [Flavobacteria bacterium BBFL7] gi|89516483|gb|EAS19143.1| tRNA and rRNA cytosine-C5-methylase [Flavobacteria bacterium BBFL7] Length = 402 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 77/456 (16%), Positives = 151/456 (33%), Gaps = 69/456 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L + ++ RD+ + +R+ Sbjct: 1 MRFHHNLVQATVDALHNIFNDGKYADQVIQKILKRDTRWG--SRDRGFIAETTYDIVRYK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + R++ V + + Sbjct: 59 RLYAEIAN--VHEPFKPVDLW-----RMTA-----------------VWIVLKGHAVPAW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + N+ RR+ EL + +P+W E G + A + L Sbjct: 95 EEYYNTPERRIKGRFDELSKNRVFRESLPDWMDELALKELGGIW-EKEATALNKQADVVL 153 Query: 181 TVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231 KL + + + + ++ F +G++ VQDA + Sbjct: 154 RANSLKTTPAELKEKLQSEEIAISQQERFPDALILKERANVFMTQAFKDGLFEVQDAGSQ 213 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V+D CA GGK L + + ++ A D+ K +L +L+ R Sbjct: 214 TIAPFLQVEPGMRVMDACAGAGGKALHLAALMENKGQIIATDIYKSKLNELKRRARRAGA 273 Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D+ K D +L+DAPCS G +RR+PD W + I + Q+ Sbjct: 274 HNIETRLIDSTKVIKKLAGKMDRLLIDAPCSGLGVLRRNPDAKWKLQPEFIDEIRATQQD 333 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405 +L + + VKP G++V++ CS+ ++E VQ+ L+ + ELV Sbjct: 334 ILQRYSTVVKPDGMMVYATCSILASENENQVQEFLKSEAGASFELV-------------- 379 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G DGF+ +++ Sbjct: 380 -------------EEQSLLAHRDGFDGFYMALMKKK 402 >gi|309781493|ref|ZP_07676229.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp. 5_7_47FAA] gi|308919906|gb|EFP65567.1| ribosomal RNA small subunit methyltransferase B [Ralstonia sp. 5_7_47FAA] Length = 465 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 88/449 (19%), Positives = 159/449 (35%), Gaps = 61/449 (13%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + L R++ ++ LR Sbjct: 59 KVLARLLHFAAPADMVVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 112 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S A L + + A +N + Sbjct: 113 SGT------------------------GPARRRLVLLGLLQTAGREAIAPFLNPVEAEWL 148 Query: 133 REKIELLQRIAGIS---IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 + +P+W + L +G E A++ A ++P +DL V + Sbjct: 149 DRWENRDRAALAARVRANLPDWLFDALVAQHGAEFTEALAQAWLTPAPLDLRVNTLKGER 208 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTL 240 + L + L + + P F G VQD + + QL Sbjct: 209 DAVLATLAEAGIEGVAAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPK 268 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 V+D CA GGKT + + S ++ A D+S++RL L L R L +D Sbjct: 269 RGEMVVDFCAGAGGKTLAIGAAMRSTGRLYAFDISEKRLSNLGPRLARSGLSNVHPGRID 328 Query: 298 AFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D VLVDAPCS GT+RR+PD+ W + + + + Q +L Sbjct: 329 SEHDAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAAR 388 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V++ CS+ +++++VV++ L + V + + I + M ++ Sbjct: 389 LLKAGGRLVYATCSVLARENQQVVEQFLAAHEDFVLVPAGEVLAAQKIALEMGP----YL 444 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGFFA L R Sbjct: 445 ELYPH--------THQTDGFFAAVLERRA 465 >gi|90418683|ref|ZP_01226594.1| putative SUN-family protein [Aurantimonas manganoxydans SI85-9A1] gi|90336763|gb|EAS50468.1| putative SUN-family protein [Aurantimonas manganoxydans SI85-9A1] Length = 433 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 94/448 (20%), Positives = 158/448 (35%), Gaps = 39/448 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ + +R + L F D+ + IV LR + ++ Sbjct: 8 AAAIEILTDIEARRRPVADALKDWGLSHRFAG--SGDRAAIGNIVYDVLRRRRSLAWRME 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + ++ + + + A +R ++ ++ Sbjct: 66 D--ETPTAMVFAAVLDSKGMGI-----------------KDMAIALDGDRFAPQMPSTDD 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 R + A + +P+W +RLE +G E +A + A +D+ V D Sbjct: 107 FAAFRTRELSAAPGAVQADVPDWLADRLEAAFG-EAWIAEAAALSDRPPLDMRVNTLRAD 165 Query: 186 IETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + A L L I ++ GF +G + +QD + I Sbjct: 166 RDKVAKALTPFAATATALAPQGLRIPPIAGDGRHPNVQVEAGFQKGWFEIQDEGSQIVAL 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G + VLD CA GGKT A + + ++ A D ++RL + L R + Sbjct: 226 LAGAAPGMQVLDFCAGAGGKTLALAASMENTGQIHAYDSDRQRLAPIHDRLKRAEVRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + + D VLVDAPC+ TGT RR PD W + K Q +L Sbjct: 286 VHAPRDDIGELEGRMDLVLVDAPCTGTGTWRRRPDAKWRLAERQLDKRLEEQDAVLDAAA 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 FVKPGG +V+ CSL +++ V L V + W + A Sbjct: 346 RFVKPGGRLVYITCSLLPEENGARVAAFLERDAGAEFKVADAAGRWAEA-LPEAPKAYHA 404 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++G DGFF L R Sbjct: 405 SALGDGTTLTLTPRTTGTDGFFFAVLER 432 >gi|134095648|ref|YP_001100723.1| putative NOL1/NOP2/sun family protein [Herminiimonas arsenicoxydans] Length = 346 Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 139/314 (44%), Gaps = 28/314 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 + +PEW ++L G+ L ++ A P +DL V E +L + Sbjct: 45 RANLPEWLFDKLVARDGEAATLELAYAMNQPAPLDLRVNAIKATREDVVAELAKAPILCE 104 Query: 202 GIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 L + +LP F G VQD + + Q+ G V+D CA GGK Sbjct: 105 LTPFAPLGIRVIKKPALQNLPLFKSGAIEVQDEGSQLLSQIVGAKRGEMVVDFCAGAGGK 164 Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFD 308 T + + ++ A D+S++RL KL+ L R L E DA D Sbjct: 165 TLSLGATMRNTGRLYAFDISEKRLVKLKPRLARSGLSNVHPVQIAHENDAKVKRLAGKID 224 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS GT+RR+PDV W + +V+ Q +L VK GG +V++ CS+ Sbjct: 225 RVLVDAPCSGLGTLRRNPDVKWRQTPQSLVELNAKQASILAGAARLVKAGGRLVYATCSI 284 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 +++E +V++ L + LVP++ + + L+ + +++++P Sbjct: 285 LDEENEAIVEQFLAAR-EDFVLVPMSEVLAE---QKVDLAMDKYLKLSP--------AKH 332 Query: 429 GMDGFFAVALRRLI 442 DGFFA L+R Sbjct: 333 QTDGFFAAVLQRKT 346 >gi|167568296|ref|ZP_02361170.1| sun protein [Burkholderia oklahomensis C6786] Length = 470 Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 98/414 (23%), Positives = 167/414 (40%), Gaps = 34/414 (8%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD----VADY 101 + ++ I +R D ++ + + + LL + A ++ D A + Sbjct: 71 RGAIQDIAYRAVRRRGTADWLIAQFVAKAP---HAHVHALLVCAFALLVDDDEHAAYAPF 127 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLE 157 VVD AV +E LVN++LRR RE+ W+ + +E Sbjct: 128 TVVDQAVTAVGARRECSFAKGLVNAVLRRFLRERAAWLERLQSDRRARWNYETWWIDAVE 187 Query: 158 NFYGKERVLAISDACISPL-YIDLTVKFDIETW------AHKLNAVMLPTGGIRLKELPE 210 + ++ + + + A +++A + IRL P Sbjct: 188 RAWPDAWQRMLAAGDAPGPLTLRVNARRMAADAYLDVLRAEQIDAEKIGRHAIRLA-SPL 246 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTAL 269 + +PGF +G+ VQDA A + + G + + VLD CAAPGGKT ++ + A+V AL Sbjct: 247 PVERIPGFVDGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVAL 306 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + R ++ NL RL L A+ D + + FD +L D PCS++G +RRHPD Sbjct: 307 ESDPARAPRIGENLARLSLAADVRIGDAGDPAQWHDGRPFDRILADVPCSASGIVRRHPD 366 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R DI QR++L VKPGG ++++ CS+ ++ E + + Sbjct: 367 IRWLRRAADIPALVDEQRRILAALWPLVKPGGELLYATCSIFPEEGELQARWFGDAYQDA 426 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS-GMDGFFAVALRR 440 V L + P + + DGFF ++ Sbjct: 427 VRLDAPGQLLPQGASGGA-----------PAVGGSSEPGRHVDHDGFFYARFQK 469 >gi|298208627|ref|YP_003716806.1| putative sun protein [Croceibacter atlanticus HTCC2559] gi|83848550|gb|EAP86419.1| putative sun protein [Croceibacter atlanticus HTCC2559] Length = 403 Score = 172 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 159/454 (35%), Gaps = 67/454 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L + + + RD+ + +R+ Sbjct: 1 MRLHRNLVFATIDALRDIFNEGKYADKEIGKALKRDKRWG--ARDRAFIAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + R+ L R+ V R + Sbjct: 59 RLYAEIAE--VKEPFSRE-----NLFRLFA-----------------VWCVLRGINLPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI-- 178 ++ + RR+ EL + IP+W E E GK I+ I Sbjct: 95 PQIEPTPTRRIKGRFDELSKIRKIRESIPDWMDELGEKELGKVWDKEIAALNEQAPVILR 154 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASI 232 + K D L + ++ + +++ + F +G++ VQDA++ + Sbjct: 155 ANSFKTDTRKLKSLLLDENIVVQPVKGYDDALQLVERQNVFTTKAFKDGLFEVQDANSQL 214 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 N + V+D CA GGK+ L + + ++ ALD+ +L++L+ R + Sbjct: 215 VASFLDVENGMRVIDTCAGAGGKSLHLAALMENKGQIIALDIYANKLKELKRRARRAGAH 274 Query: 290 AEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + +D+ K D VL+DAPCS G + R+PD W + + + K Q ++ Sbjct: 275 NIEARHIDSTKVVKKLYNSADRVLIDAPCSGLGVLSRNPDAKWKLEPEFLDKLRNTQAEI 334 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMA 406 L VK GG +V++ CS+ ++ E V+ L+ +L+ Sbjct: 335 LNSYSKMVKSGGKMVYATCSILPSENNEQVKAFLKRDEGKEFKLI--------------- 379 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +SG DGF+ L + Sbjct: 380 ------------KDKSMLSSTSGYDGFYMALLEK 401 >gi|237810344|ref|YP_002894795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei MSHR346] gi|237505926|gb|ACQ98244.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei MSHR346] Length = 469 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 152 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 153 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAVGDAPGP-LTLRVN 211 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 212 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 271 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLTADVRVG 331 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 392 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 443 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 444 ---PAVGGSGESGRHVDHDGFFYARFQK 468 >gi|332293363|ref|YP_004431972.1| Fmu (Sun) domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332171449|gb|AEE20704.1| Fmu (Sun) domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 403 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 92/458 (20%), Positives = 165/458 (36%), Gaps = 74/458 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N + L + +L RD+ + V +R+ Sbjct: 1 MKLHRNLVFAAVDALGMIFNDGEQADKVLRKVLKFDKRWG--SRDRGFIAETVYDIVRWQ 58 Query: 61 PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + + +L R +++ LR + +V D Sbjct: 59 RLYSEIAEVKAPYSRPNLFRL-FAVWATLR-GI------EVPD----------------- 93 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + ++ RR+ EL + IP+W E E GK+ + A + Sbjct: 94 --WKQMEPIPTRRIKGRFDELSKIRKFKESIPDWMDEMGEKALGKKWAAEL-AALNTQAQ 150 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELP---------ESIVSLPGFAEGVWWVQDA 228 + L T N + RL + +++ + F G + VQDA Sbjct: 151 VVLRANTLKTTPKDLRNTLADQDIDTRLLDGYPDAIELVERKNVFTTEAFKNGFFEVQDA 210 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 S+ ++ + V+D CA GGKT L + + ++ A+D+ + +L++L+ R Sbjct: 211 SSQKVARMLDVQPGMRVVDTCAGAGGKTLHLAALMENKGQIIAMDIYEGKLKELKRRSKR 270 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + E+ + K D VL+DAPC+ GTI+R+PD+ W + I K Sbjct: 271 AGAHNIETREITSTKIFKKLYNTADRVLIDAPCTGLGTIKRNPDLKWKLQPEFIDKVVQR 330 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL VK G ++++ CS+ ++++E VQ L + Sbjct: 331 QAELLESYSKIVKEDGKMLYATCSILPRENQEQVQAFLAT----------------EQGQ 374 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 L E E + +G DGF+ L R+ Sbjct: 375 KFQLDKE----------ETVSPAKTGYDGFYMALLSRK 402 >gi|149925342|ref|ZP_01913606.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105] gi|149825459|gb|EDM84667.1| hypothetical protein LMED105_03942 [Limnobacter sp. MED105] Length = 455 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 105/450 (23%), Positives = 178/450 (39%), Gaps = 47/450 (10%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +++ V+R+ SL L E + + ++ + +R L R VL ++ Sbjct: 26 VMTRVLREGRSLDQALAAETKGVK----TPQALGAIQDLAYFGMRNLGR-GQVLTRLISG 80 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L +L+ + +L+ D + VVD V ++ L N+ LR Sbjct: 81 KTLLNPEPLNELMALG-FGLLWDDKNPKYPAHTVVDQMVYACTGSEQFARAKGLANACLR 139 Query: 130 RVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKF 184 R+ + +P W+ E+L+ + + ++ A P + + + Sbjct: 140 NFLRDSNTWRNKAMEDPLAQHNLPAWWIEKLKASHPQHWETMLAQAQSHPPLVVRVNTRS 199 Query: 185 DIE-TWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +A +LNA + L P + +LPGF G VQD++A + QL Sbjct: 200 SSASAYAEQLNAAGMQASVIGEQAVLLAKPVPVSALPGFDLGQVSVQDSAAQLASQLLNP 259 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDR--------LHLYA 290 N +LD CAAPGGKT L+ + ++ ALD S +RL ++ N+ R L Sbjct: 260 QNGQRILDACAAPGGKTGHLLELADIELVALDSSPQRLGRVEDNIRRIAPTLNGQWDLRL 319 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + FD +L D PC+ +G +RRHPD+ W R DDI K + Q K+L Sbjct: 320 KVAQAELLDTWWDGVPFDGILADVPCTGSGVVRRHPDIPWLRRPDDIAKLSQIQHKILNA 379 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 S +KPGG ++ CS+ ++ + + L + + N+ W Sbjct: 380 LWSTLKPGGTLLLVTCSIFPEEGPLLAKAFLDNHSDAL---AQNAPGWVLPVAPAN---- 432 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 PD DGFF + Sbjct: 433 ------PDQGFDASP-----DGFFYAKFEK 451 >gi|218295080|ref|ZP_03495916.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23] gi|218244283|gb|EED10808.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23] Length = 398 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 101/441 (22%), Positives = 178/441 (40%), Gaps = 47/441 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ R ++ +L V R LLD S L +RD+ V +V LR L Sbjct: 1 MRPTTP-RGLALAVLLEVDRGGR-AQLLLDRVLDRS---DLPERDKAYVTHLVYGVLRRL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D +L+ L + R + +LR+ + L L D+A V VE+AK + Sbjct: 56 RLLDFLLEPHL-RAPDRLPKEVLWILRLGALEWL-LGKEDHARVSPWVEEAKA--RHPAL 111 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + LVN++LRR+ + R++ +P+W + F+G+ ++ ++ P + + Sbjct: 112 SGLVNAVLRRLKPREAPECVRLS----LPDWLCQAWRGFFGE---VSFAEGFNEPAPLFV 164 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T ++ + + G F+ Q+ ++ +L Sbjct: 165 TAYRPVDLRPGPIPGSYIWEGPK------------EDFSRLGLQPQNPASLFAAKLLEPK 212 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLC G K L GA+V + D++ RR + RL L Sbjct: 213 PGERVLDLCGGAGLKAFYLASRGAEVVSYDLNPRRQKAGAKTARRLGLK--VTYRTQDLR 270 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 K+ VL+DAPC+ TGT R HP++ + +D A Q +LL + GG+ Sbjct: 271 EPLKEKAKKVLLDAPCTGTGTFRAHPELRYRLKPEDPKAMARLQLELLETAAGATEEGGV 330 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CSL +++ + V + L P D+ + ++P Sbjct: 331 LVYAVCSLTEEEGKGVARAFLERHPEFRLEAFSCPLSVLKADLGVYVAP----------- 379 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G+DGF+ + LR++ Sbjct: 380 ------REGLDGFYYLRLRKV 394 >gi|134284097|ref|ZP_01770791.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 305] gi|134244549|gb|EBA44653.1| ribosomal RNA small subunit methyltransferase B [Burkholderia pseudomallei 305] Length = 624 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 102/448 (22%), Positives = 174/448 (38%), Gaps = 35/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + + + + ++ I +R D ++ + Sbjct: 193 AAQAVDAVDRGAALPAALAAVHAALPSNAQAAS--RGAIQDIGYRAMRRRGTADWLIAQL 250 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + P + LL + A ++ + A + VVD AV +E LVN++ Sbjct: 251 VAKAPP---AHVHALLVCAFALLVDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAV 307 Query: 128 LRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR RE+ + W+ + +E + ++ + L V Sbjct: 308 LRRFLRERAAWLERLQADRRALWNYEPWWIDAVERAWPDAWQRILAAGDAPGP-LTLRVN 366 Query: 184 FDI---ETWAHKLNAVMLPTGGIRLKE----LPESIVSLPGFAEGVWWVQDASASIPVQL 236 + + L A + I L + +PGFA+G+ VQDA A + + Sbjct: 367 ARRMTADAYLDTLRAERIDAEKIGLHAIRLASARPVERIPGFADGIVSVQDAGAQLAAEW 426 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI-- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 427 LGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIDENLARLSLTADVRVG 486 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 487 DAADPAQWHDGRPFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALWP 546 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VKPGG +++ CS+ ++ E + + V L + Sbjct: 547 LVKPGGELLYVTCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA-------- 598 Query: 414 RITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 599 ---PAVGGSGESGRHVDHDGFFYARFQK 623 >gi|13475779|ref|NP_107346.1| SUN-family protein [Mesorhizobium loti MAFF303099] gi|14026535|dbj|BAB53132.1| SUN-family protein [Mesorhizobium loti MAFF303099] Length = 429 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 162/450 (36%), Gaps = 48/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + R+ + L F D+ + IV LR +L Sbjct: 8 AAAIEVLEDIGRRHRPVADALKDWGLSHRFAG--GGDRAAIGNIVYDALRHKRSAGWLLG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 ++ LL + + + +D ++ L+++ Sbjct: 66 EDTPRAVG-----FGALLL----EWGHTAQSLNDALD----------GDKFAPPLLSATE 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + +A + IP+W E L E + A + +D+ V D Sbjct: 107 LQTIAGRGLADAPLAVRADIPDWC-EPLFERAFGEAWVGEGAALATRPPLDIRVNTLQAD 165 Query: 186 IETWAHKLNAVMLPTG----------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 +L I ++ + P F +G + VQD + I Sbjct: 166 RARVLKELADTGAQAARIAPLGIRIPPIDGDGRHPNVQAEPAFQKGWFEVQDEGSQIAAT 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G + VLD CA GGKT + + + ++ A D K RL + + R Sbjct: 226 LAGAEAGMQVLDFCAGAGGKTLALSAAMDNRGQIFAHDAEKARLAPIFDRIRRSENRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 ++ A D VLVDAPC+ +GT RR PD W + Q +L Sbjct: 286 VVTKPAELAPLSNHMDIVLVDAPCTGSGTWRRRPDAKWRLTQRQLDARKGEQSAILDAAQ 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE 410 ++VKPGG++V+ CS+ +++ E + V + L +++ + A + Sbjct: 346 AYVKPGGLLVYITCSVFSEENGEQIATFRDRDSRFVPVDHRALWDSHFPGHEAAARIGSA 405 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G I ++P + SG DGF+ ALRR Sbjct: 406 GDISLSP--------LLSGTDGFYFCALRR 427 >gi|269793258|ref|YP_003318162.1| Fmu (Sun) domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100893|gb|ACZ19880.1| Fmu (Sun) domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 430 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 85/439 (19%), Positives = 152/439 (34%), Gaps = 38/439 (8%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 K + L + +S D+ L +V LR +++ L K Sbjct: 9 KGAFASEALRIVSE-----GMSPEDRRLASLLVYGALRRRSLWRNMVERRLKRPFKELKP 63 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-- 138 + L + A ++ L + + Q + + ++ ++L+R+ RE + Sbjct: 64 VTRDGLIIGAAALMELRNFRPGPLYGGLSQCLKAEGAEDQVPILVAVLKRIEREGAQFLE 123 Query: 139 -------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 ++ +A +P W + G +R + Y V A Sbjct: 124 RLSRSSDMRDLALYHGLPAWAANLFRDQMGTQRARELVRLLGMRRYTSFFVDPSRRASAL 183 Query: 192 KLNAVMLPTGGI------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + +PG+ +G S+ V+ L Sbjct: 184 EAMGRGGIRSWEGGLDCSIRTCSYGFPPEVPGYGDGTLTPMSESSMWIVKWASALWRGGP 243 Query: 246 L-DLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDY 301 + D+C+ G K A L+ ++ D S R + +L+R L + DA + Sbjct: 244 VLDMCSGRGLKGAALLTLLKDVELECWDKSFGRTRAAQGDLERRSLGGRGVVRCGDALEL 303 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P V++DAPCS +GT RHP+ W +D+ + Q +LL + + GG V Sbjct: 304 EPLSEPSLVMLDAPCSGSGTWGRHPEGKWRVAPEDLEALSSLQVRLLERACGLIPKGGRV 363 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++S CSL ++++E VV VL +P VE I P + Sbjct: 364 IYSTCSLFREENERVVGDVLSRNPQVVEEPIGAEGRLFVRGRPFGTY------IWPGLPW 417 Query: 422 KIDGVSSGMDGFFAVALRR 440 +DGF+ L R Sbjct: 418 --------VDGFYCAVLYR 428 >gi|319945038|ref|ZP_08019300.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599] gi|319741608|gb|EFV94033.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599] Length = 491 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 97/473 (20%), Positives = 164/473 (34%), Gaps = 65/473 (13%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++ L ++ L +D + L VR + R + + + Sbjct: 40 AAAVSLRDMLA-GAHLDESIDHHTRE-----LPSASAKAVRNMAYDATRQQGLLAWLGER 93 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK---ENRHFAKLVNS 126 P +LQ L +AQ++ ++D V + + A +N+ Sbjct: 94 FNRRQPPPLLAALQAL---GMAQLIDARRPVPVIIDQTVRAVGKLPEGAAHPGAAGFINA 150 Query: 127 ILRRVSREK---IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 LRR +RE+ + P W+ ++ + ++ + + L Sbjct: 151 TLRRFARERASLMAEPLPDEARFNHPGWWVAKVRKLWPDRWQEILTASLSRAP-LSLRAN 209 Query: 184 FD-------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 L + + + +PGFAEG+ VQD A QL Sbjct: 210 RRQGGQLAAAARLQEAGIGFRLMGQDGLVLDQALPVDRIPGFAEGLMSVQDIGAQCAAQL 269 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDR---------- 285 +LD CAAPGGKTA L ++ +V ALD+ R + NL R Sbjct: 270 LDPQPGERILDACAAPGGKTAHLLEMADCEVWALDIDPDRASIITNNLQRARVPLLSQDA 329 Query: 286 ------------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + D + + FD +L+DAPCS++G +RRHPD Sbjct: 330 TEAPVAATPASEQAAGAVWGAHVLAADAGDPESWWDGRPFDRILLDAPCSASGIVRRHPD 389 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 VLW R DI + Q +LL + ++PGG ++++ CS+ ++ E+VV Sbjct: 390 VLWHRQRRDIATFSATQARLLEKLWPLLRPGGTLLYATCSIFPEEGEKVVSAFASRQADC 449 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + W ++ P DGFF L + Sbjct: 450 RWQREVRVPGWADWPQGG--------QLLP-----RSDELHEHDGFFYALLSK 489 >gi|125718645|ref|YP_001035778.1| rRNA methyltransferase RsmB [Streptococcus sanguinis SK36] gi|125498562|gb|ABN45228.1| RRNA methyltransferase RsmB, putative [Streptococcus sanguinis SK36] Length = 355 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 161/371 (43%), Gaps = 30/371 (8%) Query: 87 RVSVAQILYLD-VADYAVVDLAVEQAK-RDKENRHFAKLVNSILRR----VSREKIELLQ 140 +S+ Q+LYLD + +A V A+E AK R + + FA + + R + Sbjct: 1 MLSLYQMLYLDKIPQHAAVHEAIEIAKIRKRGSEKFANALLRRIEREGVADFETIKRKNK 60 Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPLYIDLTVKFDIETWAHKLNAVML 198 R + +P W + L +G+ER LAI + S I +T L A Sbjct: 61 RYSIQYSLPVWLVKDLIEEFGEERALAIFASLFVRSKASIRVTDMSRKAELRQLLGAEDS 120 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 L + F G +QD S+ + +LD C+APGGKT Sbjct: 121 LLSPSALVKRQGHFAGHQLFESGAITIQDESSQLVAPTLDIEGEEEILDACSAPGGKTVH 180 Query: 259 L--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCP---KKLFDAVLV 312 + ++ +TALD+ +LE + N +RL L ++DA +FD +LV Sbjct: 181 MASYLTNGHITALDLYDHKLELVEENAERLGLADKITTKKLDATKVFETFGPDVFDKILV 240 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G IRR PD+ + ++ D Q +L ++ GGI+ +S C++ ++ Sbjct: 241 DAPCSGIGLIRRKPDIKYNKENADFENLQKIQLDILDSVCQSLRKGGIIAYSTCTIMAKE 300 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 + EVV+K L S P +++ + + +G I ITP++ E DG Sbjct: 301 NFEVVEKFLASHPNFEQVLLDHE--------RKDIVKDGCILITPELYES--------DG 344 Query: 433 FFAVALRRLIQ 443 FF R++ + Sbjct: 345 FFISQFRKISE 355 >gi|73543087|ref|YP_297607.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha JMP134] gi|72120500|gb|AAZ62763.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha JMP134] Length = 457 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 106/460 (23%), Positives = 177/460 (38%), Gaps = 37/460 (8%) Query: 10 VSSHLLSCVM-----RKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63 ++ +L M + +L ++ + + V+ + T+R Sbjct: 8 LAFQMLGAAMAVRAVNEGTALPQAIEDTAAHLRLDRVRDAATRGAVQDLAYRTMRQFGTA 67 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA--------DYAVVDLAVEQAKRDK 115 A++ ++ + SL + + + D A + VVD AV A + Sbjct: 68 RALVTELVTRPPGAQVDSLLAVALSLLLEGEEGDAAKAGRGGYNAFTVVDQAVSAAASEP 127 Query: 116 ENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + H LVN++LRR RE+ E+ + +PEW+ L Y + A Sbjct: 128 KTAHARGLVNAVLRRFLRERKALLAEVSRDDQARWNLPEWWLRMLREAYPDQWTALAESA 187 Query: 172 CISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + P + ++ + A+ A + +PGF G V Sbjct: 188 NVRPPMTLRVNTARIPLQQYLTDLANAGLAGQAIGTQAVRLVRAVPVSQVPGFDRGDVSV 247 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLD 284 QDA A + L + + VLD CAAPGGKT L+ + VTA++ +R ++ NL Sbjct: 248 QDAGAQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIDVTAVESDAQRASRIDENLS 307 Query: 285 RLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL A + D+ + FD +L D PCS++G +RRHPD+ W R DI + Sbjct: 308 RLGKRASIVVGDASRPGDWWDGQQFDRILADVPCSASGIVRRHPDIRWLRREADIARLVN 367 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR+++ Q +KPGGI+V+ CS+ + EE + + L + Sbjct: 368 EQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRLQAPGQLLPGTHA 427 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A P S DGFF ++ Sbjct: 428 TQPAGDNHAGQVSLP----------SDHDGFFYARFQKRA 457 >gi|20095066|ref|NP_614913.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19888345|gb|AAM02843.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 448 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 94/455 (20%), Positives = 173/455 (38%), Gaps = 38/455 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L++ L V + + + ++ D + + V+A V T++ +D ++ Sbjct: 5 LLAVKALVLVETRGMPIPEAVERTCRDRPIDV-----RRSVQAFVYETIKRRNLLDELVA 59 Query: 69 FVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA------ 121 + ++Q+LRV ++ AV D V AKR ++ A Sbjct: 60 AGSDAHPEDVRSPYVRQILRVGTLEMKIWRNPPPAVTDCMVRIAKRLVGSKAGAFVNAVL 119 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER--VLAISDACISPLYID 179 + V + + E +R+A PEWF + + + +R V + A Sbjct: 120 RGVERVSVKDVLEDRPWTERLALKYGHPEWFVLYVLDLFEGDRSRVELLLRANNRVPPQY 179 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL--------PGFAEGVWWVQDASAS 231 L + + + G + E + +L + EG++ VQD +++ Sbjct: 180 LRINRLKLDPLVAGDVLEREYGIVTEPTFLEEVRALVRGRGYGSRAWREGLFDVQDLASA 239 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 +VLD+CAAPG KT ++ +V A+D S+ L L RL + Sbjct: 240 SASAALSAEPGETVLDVCAAPGSKTTHTAERMLDEGEVWAVDRSEWGLRVLERRCRRLGI 299 Query: 289 YAEDIIEMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 I DA + D +LVD PCS+TG R+PD W + A Q Sbjct: 300 TCVRTICRDARGLTVDDLPDVPDRILVDPPCSTTGVWNRNPDSRWKPKPL--ERFAERQW 357 Query: 346 KLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++L + + G +V+S CS+ +++E +V++ L V+LV I+ Sbjct: 358 EILEPALRIAEEHGCTLVYSTCSVSWEENEAIVKRALEEF--DVKLVDAGVLGSPGIEEF 415 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 G+ ++ + GFF ++ Sbjct: 416 RGERFSGYKKV-----RRYWPFRHDTAGFFVAKMK 445 >gi|153003173|ref|YP_001377498.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026746|gb|ABS24514.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5] Length = 437 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 90/442 (20%), Positives = 164/442 (37%), Gaps = 52/442 (11%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V + L+ S ++ V V +R+ +D +L + Sbjct: 27 VRDQGWLADRALERALRREPKPWAS--ERRAVAESVYGLIRWQGLLDFLLGG-------K 77 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + + + + + V A R A + E Sbjct: 78 PDLATRY----AAWLVRFEGVPVAD--------AARRLAVPPAALAGLASAEARLAAVTE 125 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN 194 ++R++ + +P W ER G+ ++ A + + + D E KL Sbjct: 126 PVERLSLEASLPSWIAERFVRELGEVEARTLAAAMNARAPLTVRANLLKIDREELRGKLG 185 Query: 195 AVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 + + + + + ++ +L F +G++ +QD + + G +V+D Sbjct: 186 SEGMASEPTRFSPWGLVLDGHQNAFALGSFRDGLFEIQDEGSQLIALACGARPGKTVVDA 245 Query: 249 CAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII------EMDAF 299 CA GGK A + + + ALD + RL+ + R ++ E +A Sbjct: 246 CAGAGGKSLALAMEMRNKGSLHALDTDEGRLDDAKKRARRAGVHNLRARVIAAGAEAEAQ 305 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVDAPCS GT+RR PD W +D + A QR L+ + + ++PGG Sbjct: 306 LADLAGQADVVLVDAPCSGLGTLRRKPDARWRLTPEDPERFAGIQRTLVRRFAALLRPGG 365 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRITPD 418 +V++ CS+ K ++ ++ R V L P+ A + A AL +G + + P Sbjct: 366 RLVYATCSVGKTENGDIADYAERE----VGLAPVPLAPLLGEERAKALGVDGARLELFPH 421 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 G DGFF A + Sbjct: 422 --------RHGTDGFFVAAFEK 435 >gi|299065950|emb|CBJ37131.1| Putative ribosomal RNA small subunit methyltransferase B (rsmB) [Ralstonia solanacearum CMR15] Length = 464 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 160/446 (35%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + L R++ ++ LR Sbjct: 58 KVLARLLHFAAPADMIVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 111 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S V+ ++ A R+ L R + Sbjct: 112 SG--------------------SGPARRRLVLLGLLQTAGREAIAPFLTPQEAEWLDRWA 151 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 L + +P+W + L +G+ ++ A ++P +DL V + + Sbjct: 152 IIDRTALAPR-VRANLPDWLFDALVAQHGQAFTEMLAQAWLAPAPLDLRVNTLKGERDAV 210 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL + Sbjct: 211 LATLVQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRSE 270 Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGK + S ++ A D+S++RL L L R L +D+ Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDISEKRLANLGPRLARSGLSNVHPARIDSEH 330 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILTSAARLLK 390 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++++VV++ L V + + + I + M ++ + Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEALAAQKIPLEMGP----YLELY 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 447 PHV--------HQTDGFFAAVLERRA 464 >gi|289644960|ref|ZP_06477001.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata] gi|289505233|gb|EFD26291.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata] Length = 518 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 98/509 (19%), Positives = 159/509 (31%), Gaps = 89/509 (17%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL++ +L V + L A R LS RD+ + TLR L +D Sbjct: 24 PARLLAWEVLRAVDERGA---YANLLLPALLAGRQLSARDRGFATELTYGTLRALGVLDG 80 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH------ 119 +L V + ++ LR+ Q+L V A VD V+ +R R Sbjct: 81 LLATVANRPVDEVDPPVRDALRLGAYQLLRTRVPARAAVDSTVDLVRRTSGERPVRFANA 140 Query: 120 ----------FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 ++L + + +A ++ P W E G + + Sbjct: 141 VLRRLAARLEATGGDLAVLLAAPGYDDDPVGHLATVTAHPRWVVETFAAALGGDLARTRA 200 Query: 170 DACI--SPLYIDLTVKFD--------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 L + L A P ++ LP Sbjct: 201 ALAADDERPSTHLVARPGLIDRDGLLRAARDAGLAAEPGPWSPYAVRLAGGDPGRLPAVL 260 Query: 220 EGVWWVQDASASIPVQLFGTL-----NNLSVLDLCAAPGGKTAQLIV--SGAKVTALD-- 270 G VQD + + V + + +DLCA PGGKTA L ++ A++ Sbjct: 261 AGQAGVQDEGSQLVVAALSRVATVGTDTGVSVDLCAGPGGKTALLAGLLPRTRLVAVEPR 320 Query: 271 -----------------------------------VSKRRLEKLRCNLDRLHLYAEDIIE 295 S + ++ Sbjct: 321 ATRALLVAAAVARPAPAPDPADAVSGPAAAVGDAAGSPGAGAEGMAGGPVAGRSNVVVVR 380 Query: 296 MDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D + D VL D PC+ G +RR P+ W R + + QR+LL + Sbjct: 381 ADGRAAPLRPGSADRVLADVPCTGLGALRRRPEARWRRTPAQVAPLSHLQRQLLAAAVDL 440 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 V+PGG+V + CS ++ EVV V L + + V ++ D+ Sbjct: 441 VRPGGVVGYVTCSPHPAETVEVVTDVVTRLAARGVGVSVLDAREYLPGVPDLGDGP---- 496 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++++ P G D F LRR Sbjct: 497 FVQLWPH--------RHGTDAMFLALLRR 517 >gi|316934640|ref|YP_004109622.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602354|gb|ADU44889.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1] Length = 432 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 95/464 (20%), Positives = 154/464 (33%), Gaps = 57/464 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L+S + +RI L + D+ + +V LR Sbjct: 1 MTP--AARLSAAIDLISAIDSQRIPAAKALKEWGTAHRYAG--SGDRSAIAGLVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + +L++ A A +R Sbjct: 57 RASSAFIMDSDTAR------ARVLGMLKL-------------ERGMTAEAIAALCDGSRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + ++ + PEW L E +A + A S +D Sbjct: 98 APEPLSDAEHAALSTRTLQGAPPHIAGDYPEWLDGAL-AEMFGEARVAEAAAMASRAPLD 156 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKELPES---------IVSLPGFAEGVWWVQD 227 L V + L + L + + P F +G VQD Sbjct: 157 LRVNSLKASRDKVLTSLAHLRAKASPWSPWGLRIDLPADARNPGVQAEPDFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALFSAAKPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ D+ D VLVDAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNADVRAPKGDADPLADINGSADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396 Q ++L + VKPGG + + CS+ ++ +Q + P + P A Sbjct: 337 KDQAEVLGRAARLVKPGGRIAYVTCSVLAPENTGQIQAFTAAHPEFAVVPPAEVAAALWD 396 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A +PEG + + +G DGFF LR+ Sbjct: 397 KAELFLAAAWTAPEGLL---------MTPRRTGTDGFFVSVLRK 431 >gi|114569729|ref|YP_756409.1| Fmu (Sun) domain-containing protein [Maricaulis maris MCS10] gi|114340191|gb|ABI65471.1| Fmu (Sun) domain protein [Maricaulis maris MCS10] Length = 437 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 85/461 (18%), Positives = 152/461 (32%), Gaps = 45/461 (9%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M+ G AR + +L + + + + F D+ + +V LR Sbjct: 1 MRDG--ARIAAAIEILETLQTQHQPVKDAVRDWGKAHRFAG--SGDRAWIGGLVLDALRH 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D + L + V + + Sbjct: 57 QSSTAYAMDGDAPRT-----------LAIGT---------VGRVWGVEADAIDAMFAGDD 96 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178 A + R + + +PEW +E L +G+ + Sbjct: 97 HAPEALTDAEREGLARDISDAPLHIRGDVPEWLEESLVRAFGEAAAEEGRKLSSRAPVDL 156 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESI------------VSLPGFAEGVWWV 225 + K D + ++++ + L I S+P + +G V Sbjct: 157 RVNEAKVDFDRAFKEVSSKLKAAENSPLVRSGIRIPQRDPRGKSAAAESIPAYGKGWVEV 216 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCN 282 QD + + G +LD CA GGKT L + +V A D+ RRL + Sbjct: 217 QDIGSQLAALASGARAGEQILDYCAGAGGKTLALSALLHNTGQVHAWDIDWRRLRAIWPR 276 Query: 283 LDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 L R + + D + D V DAPC+ TGT RR PD W + + Sbjct: 277 LKRADVRNVQVHDDSEDKALGEFVEKMDVVFCDAPCTGTGTWRRRPDAKWRLKPAALDRR 336 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q +L + +VKPGG +V+ CS+ +++ + V L + VP+ A +S Sbjct: 337 MKEQDIVLERAHRYVKPGGRLVYITCSVLPEENGDRVNAFLDK-VEGFKPVPVMDALIQS 395 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +T ++ + DGF+ + R+ Sbjct: 396 GGLGDGAEALLESCLTEHGALQLSPGRTDTDGFYICVMERV 436 >gi|194291224|ref|YP_002007131.1| 16S rRNA m5c967 methyltransferase, s-adenosyl-l-methionine-dependent [Cupriavidus taiwanensis LMG 19424] gi|193225059|emb|CAQ71070.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Cupriavidus taiwanensis LMG 19424] Length = 477 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 180/475 (37%), Gaps = 47/475 (9%) Query: 10 VSSHLLSCV-----MRKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63 ++ +L + + +L ++ + + ++ I T+R Sbjct: 8 LAFQMLGAATAVRAVSEGTALPQAIEDAAAQLKLDRVRDAATRGALQDIAYRTMRQFGTA 67 Query: 64 DAVLDFVLISSL-----------------PRKKYSLQQLLRVSVAQILYL------DVAD 100 A++ ++ + + + Sbjct: 68 RALVTKLVTRPPGAQVDSLLAVALALLLEHGPGPRDRH---DGADAARHEADAGRPGYST 124 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERL 156 + VVD AV A + + H LVN++LRR RE+ E+ + +P W+ L Sbjct: 125 FTVVDQAVSAAASEPKTAHARGLVNAVLRRFLRERKALLAEVNRDEQARWNLPPWWLRLL 184 Query: 157 ENFYGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210 Y + + + A + P ++V A+ A + Sbjct: 185 REAYPDQWMALAASANVRPPMTVRVNTARVSVPQYRTDLANAGLAGHVVGPQAVRLVRAV 244 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTAL 269 + LPGFAEGV VQDA A + L + + VLD CAAPGGKT L+ + +VTA+ Sbjct: 245 PVNQLPGFAEGVVSVQDAGAQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIEVTAV 304 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + +R ++ NL RL A+ + D+ + FD +L D PCS++G +RRHPD Sbjct: 305 ESDPQRATRIGENLARLGKSAKIVVGDASRPADWWDGQPFDRILADVPCSASGIVRRHPD 364 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R DI + QR+++ Q +KPGGI+V+ CS+ + EE + Sbjct: 365 IRWLRRETDIARLITEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGEQLADA 424 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + L +A +G + S DGFF ++ Sbjct: 425 IRLQA-PGQLLPGTHATLAAGADGDKATLDSSTDGTSLPSD-HDGFFYARFQKRA 477 >gi|217977506|ref|YP_002361653.1| Fmu (Sun) domain protein [Methylocella silvestris BL2] gi|217502882|gb|ACK50291.1| Fmu (Sun) domain protein [Methylocella silvestris BL2] Length = 430 Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 96/463 (20%), Positives = 159/463 (34%), Gaps = 57/463 (12%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L + R + L F +D+ + ++V LR Sbjct: 1 MIPG--ARVAAAIEILDDIETLRRPASDALKDWGLGHRFAG--SKDRSAIASLVFDALRK 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + + LR++ + D +E H Sbjct: 57 RASSAFLMDDGASRGI------MLGALRLA-----------RGLSDETIEAL--FTGEGH 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + S R + P+W + L +G +R++A + A +D Sbjct: 98 TPAQLTSAERDRLKTGDLEGAPAHVAGDFPDWLEPALAAAFG-DRLIAETAALAERAPLD 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227 L V L + S+ P + G +QD Sbjct: 157 LRVNTLKGERDKALARLARLHAAPTRFSPVGLRLPLTPDGRNPSLAGEPDYIRGRVEIQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + L LDLCA GGK A ++ + ++ A D RRL + L Sbjct: 217 EGSQLAALLCAASPGEQALDLCAGGGGKALALAAMMQNKGQIYASDDEGRRLAPIYARLA 276 Query: 285 RLHLYAEDII---EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R + + + F + D VL+DAPC+ G RR+PD W + Sbjct: 277 RAGARNVQVRPPRKGEDFLADLEGRCDLVLIDAPCTGIGAWRRNPDAKWRIRPGALELRM 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS----PIPVELVPLNSAY 397 Q +LL + F+KP G +V+ CSL ++EE V L P+P + + + Sbjct: 337 AEQDQLLAEASRFLKPQGRIVYVTCSLLLDENEERVAAFLAGHAEFRPVPAQAMAERAGL 396 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A P +R++P SSG DGF+ L R Sbjct: 397 PELSGFASTRGP--GLRLSP--------ASSGTDGFYVAMLER 429 >gi|15964076|ref|NP_384429.1| NOL1/NOP2/SUN family signature protein [Sinorhizobium meliloti 1021] gi|307301220|ref|ZP_07580982.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C] gi|307317891|ref|ZP_07597328.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83] gi|15073252|emb|CAC41760.1| probable Sun protein (FMU protein), (ribosomal RNA small subunit methyltransferase B, rRNA (cytosine-C(5)-)-methyltransferase) [Sinorhizobium meliloti 1021] gi|306896293|gb|EFN27042.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83] gi|306903676|gb|EFN34263.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C] Length = 429 Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 147/447 (32%), Gaps = 45/447 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L + ++R + L F D+ + IV LR ++D Sbjct: 10 AIEVLDDIEKRRRPVADALKDWGLSHRFAG--SGDRAAIGNIVYDALRMKLSHAYLMD-- 65 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + A A ++R + + + + Sbjct: 66 SDTPVALGHAVM-----------------YRQWGFRADTLAAELADDRFAPEAPSEAMMK 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 ++ + IPEW + E + + + A +DL V T Sbjct: 109 AFAQRRLEDAPLHVQGDIPEWTQGSFEENFSDDWLAEA-KALAGRPTLDLRVNTLKATRE 167 Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237 L A+ ++ + F +G + VQD + I L Sbjct: 168 KVLKALERSGAEPAAIARHGVRIPAGEGASRLPNVTAEISFQKGWFEVQDEGSQIVADLA 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LPGEAEQVLDYCAGGGGKTLAMAAAMNNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D VLVDAPC+ TGT RR PD W ++ + Q + L F Sbjct: 288 ESTESLTSLIGRVDRVLVDAPCTGTGTWRRRPDTKWRLTQKNLEERLAQQEEALAGAAQF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 V+PGG +++ CS+ +++E V +P L ++ Sbjct: 348 VRPGGHLIYVTCSVLPEENEAQVYGFCEDNPEFEVLSAADNWAALFGTDKPQPWSADM-- 405 Query: 415 ITPDMLEKIDGVSSGMDGFFAVAL-RR 440 + S+G DGFF + R+ Sbjct: 406 ----KTVTLTPASTGTDGFFFCLMGRK 428 >gi|20093882|ref|NP_613729.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886817|gb|AAM01659.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 452 Score = 170 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 99/455 (21%), Positives = 165/455 (36%), Gaps = 34/455 (7%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ + R SL + + R R + A ++ L +DA L+ Sbjct: 8 ELTARVFVEWEETRRSLRECVKKVLLNEGVR--DHRVWGTIHAYCFELMKRLRTVDAFLE 65 Query: 69 FVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + L ++ LRV ++ + DV + AV+ A+ VN++ Sbjct: 66 ATIRNAKLFDLDPWVRNALRVGTFEMKFNDVKPAIATNEAVKIVVECVG-EGPARFVNAV 124 Query: 128 LRRVS--------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L V + ++R+A PEWF + L + G+ + + DA Sbjct: 125 LYDVERLELSDVLNRAKDTVERLAIEYSHPEWFVKHLMDLLGENELTKLMDANNREPERY 184 Query: 180 LTVKFD----------IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 L V +E + +R+ + V + G QD + Sbjct: 185 LRVHAHMVDPDKAILALEDDGVAVEEDPDLPFMLRVVDHDVPPVRTEPYRRGWVAYQDKA 244 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ VLD CAAPGGK+A L ++T +DV+ RRL ++R N R Sbjct: 245 SAAAAYALRPEPGDRVLDACAAPGGKSAYLYALTEGEIELTCVDVNPRRLREMRRNFRRW 304 Query: 287 HLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + A + Y + FD LVD PCSS+G R P+ WT + + A Q Sbjct: 305 GIEARLRRADSSRLYRETDETFDLALVDPPCSSSGAYVRAPEAKWTVKWRHVKRYARGQL 364 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L V+ +V+S CS+ + E VV++ LR P Sbjct: 365 SILRGVAPLVER--TLVYSTCSVTVVEDESVVRRFLREFDEFEVEEPFGFGSPGFDSWMN 422 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P D + + +GFF L R Sbjct: 423 ERYP------WADRVRRFWPHRHRTEGFFVARLVR 451 >gi|218659414|ref|ZP_03515344.1| RNA methyltransferase - sun protein [Rhizobium etli IE4771] Length = 311 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 163/301 (54%), Positives = 200/301 (66%), Gaps = 1/301 (0%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 D++ VDLAVEQA +D NR FAKLVN++LRR+ REK E+L I ++ +P WF RLE Sbjct: 2 PDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKEEVLAEIGKVAPMPSWFLARLEK 61 Query: 159 FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218 YG+E LAIS + + P IDLTVK D E WA +LN V LPTGG+RL I SL GF Sbjct: 62 AYGREAALAISQSQLEPAAIDLTVKSDAEGWAKRLNGVALPTGGVRLAAFDGGIPSLEGF 121 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEK 278 EG WWVQDA+ASIP +LFG L DLCAAPGGKTAQLI++G VTALD S+ RL + Sbjct: 122 DEGAWWVQDAAASIPARLFGDLAGKRAADLCAAPGGKTAQLILAGGAVTALDQSESRLRR 181 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 LR NLDRL L AE + D + P + FDA+L+DAPCSSTGT RRHPDVLWT+ DDI Sbjct: 182 LRSNLDRLGLTAETV-AADLTTFKPPEGFDAILLDAPCSSTGTTRRHPDVLWTKGPDDIA 240 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + A Q +LL ++ + PGG++VFSNCSLD + EEVV +VL + Sbjct: 241 RLAALQERLLRHALTLLTPGGMLVFSNCSLDPAEGEEVVARVLSDTGHDRARSDQRRRLG 300 Query: 399 K 399 Sbjct: 301 P 301 >gi|114798023|ref|YP_760510.1| NOL1/NOP2/sun domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114738197|gb|ABI76322.1| NOL1/NOP2/sun domain protein [Hyphomonas neptunium ATCC 15444] Length = 435 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 94/451 (20%), Positives = 167/451 (37%), Gaps = 46/451 (10%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + +L+ V+ + + + + + +D+ V +V TLR Sbjct: 9 AAISVLTDVLERHQPVKIAVRDWGKSARYAG--SKDRAWVSGLVLDTLRRRNS------- 59 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + R ++ + L + + + D + ++ + H + + Sbjct: 60 ----TAQRMGFTDPRALVLGT--LRFVWDWPAADI--------EQACYDEHGPTPLTNAE 105 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTV-KFDI 186 R + I PEW +E +G++ A + A + + + + K D Sbjct: 106 RDALLNASDFAAPIHVQGDFPEWMTPHMERAFGEDTVAEAQAMAVRADVDLRVNALKTDT 165 Query: 187 ETWAHKLNAV----------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 E A LN V + +S+ ++P F++G VQDA + I Sbjct: 166 EKAALPLNTVRAEPSKLLTNAFHIPARDPTQREDSLENIPAFSKGWVEVQDAGSQIAAAA 225 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 VLD CA GGKT L + ++ A D+ +RL L L R + + Sbjct: 226 ANAKPGEQVLDFCAGGGGKTLALAAPMGGKGQIFAYDIDSKRLSALVPRLKRSGTHNVQL 285 Query: 294 IEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + D V VDAPC+ TGT RR PD W + + K QR +L+ Sbjct: 286 VHPSEGTSLDPLVEQMDLVFVDAPCTGTGTWRRRPDSKWRVRPNQLGKRIEDQRGILIDA 345 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 FVKPGG ++++ CS ++ E+ V + L ++A + Sbjct: 346 ARFVKPGGRLLYATCSFLIEEDEDRVAEFLS---GDTRFTEEDAAEAAIASGLLTDHGAE 402 Query: 412 WIRIT--PDMLEKIDGVSSGMDGFFAVALRR 440 +R P ++ + + DGFF LRR Sbjct: 403 IVRKYRGPTGSVRLTPLRASTDGFFFAVLRR 433 >gi|206558871|ref|YP_002229631.1| ribosomal RNA small subunit methyltransferase B [Burkholderia cenocepacia J2315] gi|198034908|emb|CAR50780.1| ribosomal RNA small subunit methyltransferase B [Burkholderia cenocepacia J2315] Length = 463 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 178/471 (37%), Gaps = 51/471 (10%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + HL L +R+ +L L + + + Sbjct: 11 SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSTVFAQMPSGAQALA-RG 69 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103 + + T+R L D ++ + + P + +L + A +L + V Sbjct: 70 ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159 VD AV +E +VN++LRR RE+ + W+ + ++ Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDDPVACWNYRAWWVDAVKRA 186 Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + ++ V ++T + + Sbjct: 187 WPDAWQAILAAGERQGPLTLRVNARRANVDAYLDTLRASGIEAVAIGRHAVRLASALPVD 246 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272 +PGFA+GV VQDA A + + G + + VLD CAAPGGKT ++ + A+V AL+ Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 R ++ NL RL L A ++ D + + FD +L D PCS++G +RRHPD+ Sbjct: 307 ATRAARIGENLVRLSL-AANVCVGDAGAPDAWYDGRPFDRILADVPCSASGIVRRHPDIR 365 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R DI QR++L VKPGG +++ CS+ ++ E + + V Sbjct: 366 WLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEGQARWFEAACEDAVR 425 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + A ++ DGFF ++ Sbjct: 426 LDAPGQLLPGGVQGRAA--------------AGALDQNTDHDGFFYARFQK 462 >gi|311745455|ref|ZP_07719240.1| tRNA/rRNA cytosine-C5-methylase (sun family protein) [Algoriphagus sp. PR1] gi|311302389|gb|EAZ82227.2| tRNA/rRNA cytosine-C5-methylase (sun family protein) [Algoriphagus sp. PR1] Length = 395 Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 81/456 (17%), Positives = 162/456 (35%), Gaps = 76/456 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L+ + + +++ + RD+ + +R+ Sbjct: 1 MKLHNNTIRGVHSALAAIFEEGQYADKVIERTLKSNPKWG--SRDRSFIAETTYEMVRWW 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 I+ + P ++ + + + ++R+ Sbjct: 59 RLINYL--------SPSNNPYD----LFGTYWLMQGHSLPPWE---EFEKINPDKLKDRY 103 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK-ERVLAISDACISPLYI 178 +++ IP+W +E E G S + + + Sbjct: 104 EKLEDPALIES-----------------IPDWLQELGEKELGDLWEAEIHSLNQEAEVVL 146 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASAS 231 + L A + I + + +++ P F +G++ VQD S+ Sbjct: 147 RVNTLKATRERLKNLLAEDNISTHIIKGYKDALILDERQNVFRHPSFKQGMFEVQDGSSQ 206 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + + V+D CA GGK+ L+ + KV ++DV + +L++ + R + Sbjct: 207 LVAESLAVEPGMRVIDACAGAGGKSLHLAALMENKGKVLSMDVEEWKLQQTKLRARRDGV 266 Query: 289 YAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 +IE K+ D +L+D PCS G ++R+PD W + + I K Q++ Sbjct: 267 SIIERKVIENSKTIKRLKESADRLLLDVPCSGLGVLKRNPDTKWKLNPESIEKVKQTQQE 326 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405 +L S +KPGG +V++ CS+ +++E VQK L + EL+ Sbjct: 327 ILQNYPSMLKPGGQMVYATCSILPSENQEQVQKFLASEAGKNFELI-------------- 372 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +K+ SG DGF+ L + Sbjct: 373 -------------EDQKVLSHESGFDGFYIARLLKK 395 >gi|33594975|ref|NP_882618.1| hypothetical protein BPP0259 [Bordetella parapertussis 12822] gi|33565051|emb|CAE40000.1| conserved hypothetical protein [Bordetella parapertussis] Length = 474 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 119/453 (26%), Positives = 178/453 (39%), Gaps = 61/453 (13%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 +RK SLT L + V+AI +R L DAV + ++ S Sbjct: 56 QAVRKGRSLTDALAET---------PPALRPAVQAISFHAMRQLGWADAVAETLVRRSP- 105 Query: 77 RKKYSLQQLLRVSVAQILYLDV----------ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LLRV+++ + A + VVD AV A ++ + L+N+ Sbjct: 106 --GPLFDALLRVALSLLRAAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA 163 Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LRR RE+ L R A P W+ E LE Y E+ I P + L V Sbjct: 164 SLRRFLREREALQDSVAERPAARWNHPSWWVELLERAYP-EQWRGILAGANVPAPLTLRV 222 Query: 183 KFDIETWAH-------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T A + P + LPG+ G W VQDA A + Sbjct: 223 NRRRATVEQVRQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAGAQLAAP 282 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + + VLD CAAPGGKTA L+ + + ALD +RLE++ NL+RL L + Sbjct: 283 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPRVR 342 Query: 295 EMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 A + + FDAVL D PC+++G +RRHPD+ W R +D+ ++A Q ++ Sbjct: 343 LAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIAD 402 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V PGG +++ CS+ + E + R L Sbjct: 403 ALWRTVAPGGRLLYVTCSVFPAEGREQTEAFARRHADAAPLDAPG--------------- 447 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P ++ DGFF + Sbjct: 448 ----QLLPVAIDATPQAQH--DGFFYALFAKRT 474 >gi|107024054|ref|YP_622381.1| sun protein [Burkholderia cenocepacia AU 1054] gi|116691141|ref|YP_836764.1| sun protein [Burkholderia cenocepacia HI2424] gi|105894243|gb|ABF77408.1| sun protein [Burkholderia cenocepacia AU 1054] gi|116649230|gb|ABK09871.1| sun protein [Burkholderia cenocepacia HI2424] Length = 463 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 105/471 (22%), Positives = 180/471 (38%), Gaps = 51/471 (10%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + HL L +R+ +L L + + + Sbjct: 11 SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSTVFAQMPSGAQALA-RG 69 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103 + + T+R L D ++ + + P + +L + A +L + V Sbjct: 70 ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159 VD AV +E +VN++LRR RE+ + W+ + ++ Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDEPVARWNYRAWWVDAVKRA 186 Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + + ++ +V ++T + Sbjct: 187 WPEAWQAILAAGERQGPLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVE 246 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272 +PGFA+GV VQDA A + + + + VLD CAAPGGKT ++ + A+V AL+ Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLDARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 R ++ NL RL L A ++ D + + + FD +L D PCS++G +RRHPD+ Sbjct: 307 ATRAARIGENLVRLSL-AANVCVGDAGASGTWYDGRPFDRILADVPCSASGIVRRHPDIR 365 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R DI QR++L VKPGG +++ CS+ ++ E + + V Sbjct: 366 WLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVR 425 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L S+ A ++ DGFF ++ Sbjct: 426 LDAPGQLLPGSVQGRAA--------------AGALDQNTDHDGFFYARFQK 462 >gi|167834982|ref|ZP_02461865.1| ribosomal RNA small subunit methyltransferase B [Burkholderia thailandensis MSMB43] Length = 470 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 175/449 (38%), Gaps = 36/449 (8%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + S+ + ++ I +RF D ++ + Sbjct: 38 AAQAVDAVNRGAALPAALAAVHASMSSNAQ--AAARGAIQDIAYRAMRFRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + LL + A ++ + + VVD AV +E LVN+ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDGEHAAYTPFTVVDQAVTAIGARRECSFAKGLVNA 152 Query: 127 ILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LRR RE+ W+ + +E + ++ + + Sbjct: 153 VLRRFLRERAAWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDTPGPLTLRVN 212 Query: 182 VKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + A +++A + IRL + +PGFA+G+ VQDA A + + Sbjct: 213 ARRMTAQAYLDVLRAERIDAEKIGRHAIRLASAL-PVERIPGFADGLVSVQDAGAQLAAE 271 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 WLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLAADVRV 331 Query: 294 -IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 GDAGDPAQWHDGRPFDRVLADVPCSASGIMRRHPDIRWLRRAADIPALVAEQRRILSALW 391 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 VKPGG ++++ CS+ + E + + V L + Sbjct: 392 PLVKPGGELLYATCSIFPDEGELQARWFGDACQDAVRLDAPGQLLPQGATGGA------- 444 Query: 413 IRITPDMLEKIDGVSS-GMDGFFAVALRR 440 P + + DGFF ++ Sbjct: 445 ----PAVGGSGEPGRHVDHDGFFYARFQK 469 >gi|85715674|ref|ZP_01046654.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A] gi|85697613|gb|EAQ35490.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A] Length = 432 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 94/459 (20%), Positives = 162/459 (35%), Gaps = 47/459 (10%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + ++ + +R+ L F D+ + +V LR Sbjct: 1 MTP--AARLSAAIEVMKTIDGQRVPAAKALKEWGAAHRFAG--SGDRAAISGLVYDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + +L L+ A V A +R Sbjct: 57 QASSAWIMDDDTPRGR-----------LLG---MLRLERGMNADV-----IASLCDGSRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + + PEW L +G +R + A +D Sbjct: 98 APEPLTDGEWQALTARSLQEAPAHVAGDYPEWLDVYLAEAFGDDRAA-ETAAMARRAPLD 156 Query: 180 LTVKFDIETWAHKLNAVML------PTGGIRLKELPES------IVSLPGFAEGVWWVQD 227 L V L ++ P + L+ + + I + F +G VQD Sbjct: 157 LRVNTLKAKRDKVLGSLRHLGVTATPWSPLGLRIMLGADARNPGIQAEEEFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 + + L G V+DLCA GGKT ++ ++ A D KR+L + L Sbjct: 217 EGSQVAALLSGVRPGEQVIDLCAGAGGKTLTLAAMMQGRGRLIATDRDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ +I ++ D VL+DAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNAEIRSPKGEAEPLSDIRESADLVLIDAPCTGTGTWRRNPDAKWRMRPGALEVRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + FVKPGG V + CS+ Q++ E ++K + ++P + Sbjct: 337 RDQSEVLDRAAGFVKPGGRVAYVTCSVLPQENSEQIRKFISRH-QDFTVMPPSKVASMLW 395 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D A ++ + + +G DGFF L + Sbjct: 396 DKADDFLAAVYVS---NEGLLMTPRRTGTDGFFVSILAK 431 >gi|296161366|ref|ZP_06844173.1| sun protein [Burkholderia sp. Ch1-1] gi|295888352|gb|EFG68163.1| sun protein [Burkholderia sp. Ch1-1] Length = 457 Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 112/450 (24%), Positives = 179/450 (39%), Gaps = 29/450 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + V +L L + SA + + V+ I T+R L + ++ + Sbjct: 16 AGQAVGAVRL-GAALPAALQSVFV-SAPEGSAAAARGAVQDIAYRTMRRLATAEWLIAKL 73 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + +L S+ ++ + A + VVD AV +E LVN+ Sbjct: 74 VKKAPP---PHVGHVLACSLVLLIDDEANAAYAPFTVVDQAVSAIAARRECAFAKGLVNA 130 Query: 127 ILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 +LR RE+ P W+ + ++ + ++ + L V Sbjct: 131 VLRTFLREREALLSAAQTDEVACWNYPAWWIDAVKRAWPDAWQSVLAAGDTQGP-LTLRV 189 Query: 183 KFDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T L + P + +PGF +GV VQDA A + Q Sbjct: 190 NARRSTVDAYLQVLQNHHIAASKGGDYAVKLATPMPVDRIPGFNDGVVSVQDAGAQLAAQ 249 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAE--- 291 L G + + VLD CAAPGGKT L+ + ++ AL+ R ++ NL RL L AE Sbjct: 250 LLGVRDGMRVLDACAAPGGKTGHLLELADLQLVALESDAARARRIGENLQRLKLEAEVRI 309 Query: 292 -DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D + + FD +L D PCS++G +RRHPD+ W R DI QR++L Sbjct: 310 GDAGAPAKWHDDIDQPFDRILADVPCSASGIVRRHPDIRWLRRASDIPALVAEQRRILDA 369 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 VKPGG +++ CS+ ++ E Q V L S+ A A + Sbjct: 370 LWPLVKPGGELLYVTCSIFPEEGELQAQWFGNKYQDAVRL-DAPGQLLPSVARAPADTSA 428 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G E G +S DGFF ++ Sbjct: 429 GSH--AGQSAEDSAGANSDHDGFFYARFQK 456 >gi|20093483|ref|NP_613330.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886312|gb|AAM01260.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 444 Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 102/452 (22%), Positives = 178/452 (39%), Gaps = 42/452 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV-NVTLRFLPRIDAVLDFV 70 + +L+ R +SL D+ F + S R + + R ++ + L + +LD V Sbjct: 11 ARILAEHYRSGVSLKESFYRAL-DNPFSIPSHRARAIHRRLMELG--KRLGLCEEILDDV 67 Query: 71 LISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF----AKLVN 125 + S L+ +L + ++L+ + V D A AK +R A + Sbjct: 68 IQSGSFEDLGPELKGVLVTAADEMLFEGTSPALVTDAATRVAKELVSDRVADFVHAVCFD 127 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 V R K + P F + + ++ + AC P + V Sbjct: 128 LEKYDVDRLKRRGYDDLCLRHYFPPDFVDYVRRVLPEDEIEDFLRACNKPAVKYVRVNTL 187 Query: 185 --DIETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 D++ +L +R+ E IV + EG+ + QD +++ Sbjct: 188 RADVDEVRERLAEEGVLTEPDEHIPDLLRVVEEEIPIVRTEAWKEGLVFTQDKASAAVAH 247 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA-- 290 + V+DLCAAPGGKT + ++ A+D S RL+ +R L + Sbjct: 248 VLDPQPGEFVVDLCAAPGGKTLHALCLMEGEGEILAVDKSDWRLDAMREKLAWQRVPDGV 307 Query: 291 EDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 ++ DA + + + D +VD PCS G++++ P+ W + + A Q +LL Sbjct: 308 VELRCADAREIPEELDEEADRAIVDPPCSGMGSVQKRPETRWNVTKKRVRRYAKLQSELL 367 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 I V+PGGIVV+S C+L ++E V+++V R + +E V L + Sbjct: 368 EAAIKTVRPGGIVVYSTCTLTINENENVIRRVARRYDVTIEKVNLQFGRRGLVP------ 421 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G R P GFF LR+ Sbjct: 422 --GTRRFYPHTDRCQ--------GFFIAKLRK 443 >gi|323139063|ref|ZP_08074122.1| Fmu (Sun) domain protein [Methylocystis sp. ATCC 49242] gi|322395723|gb|EFX98265.1| Fmu (Sun) domain protein [Methylocystis sp. ATCC 49242] Length = 433 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 95/458 (20%), Positives = 161/458 (35%), Gaps = 48/458 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + +L + R+R + L F +D+ + ++V LR Sbjct: 1 MTPAAHV-SAAIEILDVLARRRRPVADALKEWGVSHRFAG--SKDRAAIASLVFDALRKA 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 V+ + LR + +D A + + A + Sbjct: 58 ASASHVMGADTPR------AQMLGALR----EARGMDAAAISALCTGERHAPPPLSDDER 107 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YID 179 A+L ++ L PEW +R + +G + + Sbjct: 108 ARLESATLADAPDHV---------RGDYPEWLADRFASAFGSRAAEEGAALAARAPVDLR 158 Query: 180 LTV-KFDIETWAHKLNAVMLPT--------GGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + K + KL + + ++ + + +G QD ++ Sbjct: 159 VNILKGSRDQALEKLAHLSPAPTPLSPIGLRIEVGQGRGPALTAETAYVKGFVEPQDEAS 218 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + L VLDLCA GGK A + + ++ A D RRL + L+R Sbjct: 219 QLASLLCAASPGEQVLDLCAGGGGKALALAGQMHNRGQLYAYDSDGRRLMPIHERLERAG 278 Query: 288 LYAEDIIEMDAFDY---CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + D VL+DAPC+ TGT RRHPD W + Q Sbjct: 279 ARNIQVRAPRGKADVLADLEGRCDLVLIDAPCTGTGTWRRHPDAKWRLAPGALELRLKEQ 338 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS-IDM 403 LL Q + FVKPGG + + CS+ ++ EE + L S + L A ++ Sbjct: 339 ATLLEQAVRFVKPGGRLAYVTCSVLLEEDEEQIAVFLGSHSDFMALSGAEMAENAGLPEL 398 Query: 404 AMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A SP G +R++P +SG DGF+ L+R Sbjct: 399 ARYASPHGPGLRLSP--------ATSGTDGFYVALLQR 428 >gi|158966689|ref|NP_620086.2| putative ribosomal RNA methyltransferase NOP2 [Mus musculus] Length = 794 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ +L + ++ +A P I L A L Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 319 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 439 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI + A Q++LLL I V K GG +V+ Sbjct: 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 499 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 500 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTR 552 Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444 + + MDGFF ++ + QP Sbjct: 553 RFYPHTHNMDGFFIAKFKKFSNSIPQP 579 >gi|74150573|dbj|BAE32311.1| unnamed protein product [Mus musculus] Length = 732 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ +L + ++ +A P I L A L Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 319 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 439 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI + A Q++LLL I V K GG +V+ Sbjct: 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 499 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 500 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTR 552 Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444 + + MDGFF ++ + QP Sbjct: 553 RFYPHTHNMDGFFIAKFKKFSNSIPQP 579 >gi|182678888|ref|YP_001833034.1| Fmu (Sun) domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182634771|gb|ACB95545.1| Fmu (Sun) domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 430 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 91/461 (19%), Positives = 159/461 (34%), Gaps = 53/461 (11%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L+ + +R + F +D+ + +V LR Sbjct: 1 MIP--AARLSAAIEILADIETRRRPAADAVKDWGLAHRFAG--SKDRAAIAGLVYDALRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++ + +L S+ Q+ L + + A + Sbjct: 57 KASSAWIMGEDTP----------RAVLLGSLRQVQGLPLDAVEALFSGEGHAPALLSDAE 106 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + L + P+W + + +G +D Sbjct: 107 KQRYRDGTLDDAPA---------SVAGDFPQWLEPAFQRVFGALAAAEGEALAARAP-LD 156 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQD 227 L V A + A+ +V+ + +G+ VQD Sbjct: 157 LRVNLLKGDRAKAIKALAHLKPEPTPYSPFGLRLPLLPDGRAAPLVAEAAYVKGLVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + L VLDLCA GGKT A L+ + ++ A D RRL + L Sbjct: 217 EGSQLAALLAHAKPGEQVLDLCAGGGGKTLALAALMNNKGQIYASDNDGRRLAPIHERLK 276 Query: 285 RLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R + + + D V VDAPC+ TGT RR+PD W + + Sbjct: 277 RADVRNVQVRAPRGRVAKLDDLEGRCDLVFVDAPCTGTGTWRRNPDAKWRIRPGALEERI 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q + L +VKPGG +V++ CS+ +++E+ + L+ + + A + Sbjct: 337 KQQNETLATAARYVKPGGRIVYATCSVLAEENEDRITDFLKENAGFQARPAGDMAREAGL 396 Query: 402 DM--AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 M A + +R+TP +SG DGF+ V L R Sbjct: 397 PMLADFASTLGPGLRLTP--------RTSGTDGFYVVELTR 429 >gi|170734472|ref|YP_001766419.1| sun protein [Burkholderia cenocepacia MC0-3] gi|169817714|gb|ACA92297.1| sun protein [Burkholderia cenocepacia MC0-3] Length = 463 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 106/471 (22%), Positives = 180/471 (38%), Gaps = 51/471 (10%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + HL L +R+ +L L + + + + Sbjct: 11 SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSVVFAQMPSGAQALA-RG 69 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103 + + T+R L D ++ + + P + +L + A +L + V Sbjct: 70 ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159 VD AV +E +VN++LRR RE+ + W+ + ++ Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDDPVARWNYRAWWVDAVKRA 186 Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + ++ +V ++T + Sbjct: 187 WPDAWQAILAAGEHQGPLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVE 246 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272 +PGFA+GV VQDA A + + G + + VLD CAAPGGKT ++ + A+V AL+ Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 R ++ NL RL L A ++ D + + FD +L D PCS++G +RRHPD+ Sbjct: 307 ATRAARIGENLVRLSL-AANVCVGDAGAPDTWYDGRPFDRILADVPCSASGIVRRHPDIR 365 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R DI QR++L VKPGG +++ CS+ ++ E + + V Sbjct: 366 WLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVR 425 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L S+ A ++ DGFF ++ Sbjct: 426 LDAPGQLLPGSVQGRAA--------------AGALDQNTDHDGFFYARFQK 462 >gi|222112408|ref|YP_002554672.1| sun protein [Acidovorax ebreus TPSY] gi|221731852|gb|ACM34672.1| sun protein [Acidovorax ebreus TPSY] Length = 457 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 113/458 (24%), Positives = 178/458 (38%), Gaps = 54/458 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ + S T L+ + V+A++ LR L R A+ Sbjct: 25 ALALQAVRA----GQSGTVALETTAAAL---------RPGVQALLFQVLRHLGRAQALRR 71 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + P + +L A + +V+ AVE AKR R A VN+ L Sbjct: 72 QLAPRNPPPRVDALLCTALALAWDPQTAPYAPFTLVNQAVEAAKRHPATRAQASFVNACL 131 Query: 129 RRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK 183 RR RE+ + P W+ +RL + + + + ++ Sbjct: 132 RRFLRERDTLVAATQGDEVAVWNHPTWWIQRLRRDHPDQWQQILQANNAPAPMVLRISKS 191 Query: 184 FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPV---- 234 + + E P + LPGFAEGV VQDA+A + Sbjct: 192 KSTPALYQQALEAINIEAMAVGPEGLALARPVPVQQLPGFAEGVVSVQDAAAQMAAPLLL 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSG------AKVTALDVSKRRLEKLRCNLDRLHL 288 L +LD CAAPGGKTA L+ +VTAL+V R E++ NL RL L Sbjct: 252 NGLDAAQPLRLLDACAAPGGKTAHLLEWAAALRAPWRVTALEVDAARAERIHDNLHRLGL 311 Query: 289 YAEDIIE-----MDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 A+ ++ D + + FDA+L+DAPC+++G +RRHPDV W R D+ + A Sbjct: 312 SAQVLVADAAVPADWWQQASGGEPFDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAA 371 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++PGG +++ CS+ + + + + L + L + S D Sbjct: 372 QQSRLLAALWPLLRPGGRLLYCTCSVFRAEGDVQIAAFLAHNTDARLLPSPGHLFPGSPD 431 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L G DGFF L + Sbjct: 432 KRDGLRDNG---------------PGEHDGFFYALLHK 454 >gi|33599251|ref|NP_886811.1| hypothetical protein BB0262 [Bordetella bronchiseptica RB50] gi|33575297|emb|CAE30760.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 444 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 119/453 (26%), Positives = 179/453 (39%), Gaps = 61/453 (13%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 +RK SLT L + V+AI +R L DAV + ++ S Sbjct: 26 QAVRKGRSLTDALAET---------PPALRPAVQAISFHAMRQLGWADAVAETLVRRSP- 75 Query: 77 RKKYSLQQLLRVSVAQILYLDV----------ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LLRV+++ + A + VVD AV A ++ + L+N+ Sbjct: 76 --GPLFDALLRVALSLLRAAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA 133 Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LRR RE+ L R A P W+ E LE Y E+ I P + L V Sbjct: 134 SLRRFLREREALQDSVAERPAARWNHPSWWVELLERAYP-EQWRGILAGANVPAPLTLRV 192 Query: 183 KFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T A+ + P + LPG+ G W VQDA A + Sbjct: 193 NRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYDAGWWSVQDAGAQLAAP 252 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + + VLD CAAPGGKTA L+ + + ALD +RLE++ NL+RL L + Sbjct: 253 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADAQRLERVDQNLERLGLRTPRVR 312 Query: 295 EMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 A + + FDAVL D PC+++G +RRHPD+ W R +D+ ++A Q ++ Sbjct: 313 LAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAEDVPRTAALQARIAD 372 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V PGG +++ CS+ + E + R L Sbjct: 373 ALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPLDAPG--------------- 417 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P ++ DGFF + Sbjct: 418 ----QLLPVAIDATPQAQH--DGFFYALFAKRT 444 >gi|300690682|ref|YP_003751677.1| ribosomal RNA small subunit methyltransferase B (rsmB) [Ralstonia solanacearum PSI07] gi|299077742|emb|CBJ50380.1| Putative ribosomal RNA small subunit methyltransferase B (rsmB) [Ralstonia solanacearum PSI07] Length = 464 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 89/446 (19%), Positives = 160/446 (35%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + L R++ ++ LR Sbjct: 58 KVLARLLHFAAPADMIVSQYFREH--HALGHRERGIIAEAAFAVLRRKVEF----GQFAE 111 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S A +V L + Q + F + Sbjct: 112 SG---------------------SGPARRRLVLLGLLQTAGREAIAPFLTPPEAEWLDRW 150 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 + +P+W + L +G+ A++ A ++P +DL V + + Sbjct: 151 ATIDRTALAPRVRANLPDWLFDALVAQHGQAFTEALAQAWLAPAPLDLRVNTLKGERDAV 210 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL Sbjct: 211 LATLVQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRGE 270 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGKT + + S ++ A DVS++RL L L R L +D+ Sbjct: 271 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDVSEKRLANLGPRLARSGLSNVHPARIDSEH 330 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 331 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSGQAVEEMSAKQLSILASAARLLK 390 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++++VV++ L V + + + I + M ++ + Sbjct: 391 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEALAAQKIPLEMGP----YLELY 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 447 PHV--------HQTDGFFAAVLERRA 464 >gi|300796393|ref|NP_001178714.1| putative ribosomal RNA methyltransferase NOP2 [Rattus norvegicus] gi|109474224|ref|XP_001065060.1| PREDICTED: NOP2 nucleolar protein homolog (yeast) [Rattus norvegicus] Length = 772 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ +L + ++ +A P I L A L Sbjct: 255 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 314 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 315 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 374 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + + D + F Sbjct: 375 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIVSHYDGRQFPKVVGGF 434 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI + A Q++LLL I V K GG +V+ Sbjct: 435 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 494 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 495 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRATR 547 Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444 + + MDGFF ++ + QP Sbjct: 548 RFYPHTHNMDGFFIAKFKKFSNSIPQP 574 >gi|254246867|ref|ZP_04940188.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia PC184] gi|124871643|gb|EAY63359.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia PC184] Length = 463 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 104/470 (22%), Positives = 176/470 (37%), Gaps = 49/470 (10%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + HL L +R+ +L L + + + Sbjct: 11 SSGRPARLAALHLAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMPSGAQALA-RG 69 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAV 103 + + T+R L D ++ + + P + +L + A +L + V Sbjct: 70 ATQDVAYRTMRRLGSADWLIGKFVSKAPP---AHVHAVLAGAFALLLDPPDEAAYPAFTV 126 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENF 159 VD AV +E +VN++LRR RE+ + W+ + ++ Sbjct: 127 VDQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAAMQDDPVARWNYRAWWVDAVKRA 186 Query: 160 YGKERVLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + ++ +V ++T + Sbjct: 187 WPDAWQAILAAGERQGPLTLRVNARRASVDAYLDTLRASGIDATAIGRHAVRLASALPVE 246 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVS 272 +PGFA+GV VQDA A + + G + + VLD CAAPGGKT ++ + A+V AL+ Sbjct: 247 RIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVALESD 306 Query: 273 KRRLEKLRCNLDRLHLY-AEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R ++ NL RL L + + + FD +L D PCS++G +RRHPD+ W Sbjct: 307 ATRAARIGENLVRLSLAANVCVGDAGTPDTWYDGRPFDRILADVPCSASGIVRRHPDIRW 366 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 R DI QR++L VKPGG +++ CS+ ++ E + + V L Sbjct: 367 LRREADIPALVAEQRRILWALWPLVKPGGELLYVTCSIFPEEGELQARWFEAACEDAVRL 426 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S+ A ++ DGFF ++ Sbjct: 427 DAPGQLLPGSVQGRAA--------------AGALDQNTDHDGFFYARFQK 462 >gi|192290881|ref|YP_001991486.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1] gi|192284630|gb|ACF01011.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1] Length = 433 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 99/464 (21%), Positives = 162/464 (34%), Gaps = 57/464 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L++ + +RI L + D+ + +V LR Sbjct: 1 MTP--AARLSAAIDLIAAIDAQRIPAAKALKEWGTAHRYAG--SGDRSAIAGVVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + +L++ A A +R Sbjct: 57 RASCAYLMDADTPR------ARVLGMLKL-------------ERGMTAEAIAALCDGSRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + ++ + PEW L E +A + A S +D Sbjct: 98 APEPLSDAEHAALSTRTLDGAPPHIAGDYPEWLDGAL-AEMFGEARVAEAAAMASRAPLD 156 Query: 180 LTVKFDIETWAHKL------NAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQD 227 L V + +L A + P L+ + + + P F +G VQD Sbjct: 157 LRVNTLKASRDKELASLAHLGAKLAPWSPWGLRIELPADARNPGVQAEPDFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + L V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALLSAARPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ ++ K D VLVDAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNAEVRAPKGDADPLADIKGSADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396 Q ++L + VKPGG + + CS+ ++ VQ + P + P A Sbjct: 337 KDQAEVLARAARLVKPGGRIAYVTCSVLAPENTGQVQAFTAAHPEFAVVPPAEVAAALWD 396 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A +SPEG + + +G DGFF L+R Sbjct: 397 KAELFLAAAWISPEGLL---------MTPRRTGTDGFFVSVLKR 431 >gi|293602344|ref|ZP_06684790.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553] gi|292819106|gb|EFF78141.1| RNA methyltransferase Sun [Achromobacter piechaudii ATCC 43553] Length = 445 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 117/441 (26%), Positives = 186/441 (42%), Gaps = 47/441 (10%) Query: 25 LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 + +LD A +S + +A+ +R+L DAV ++ SL Sbjct: 25 VEGVLDGRSLTDALTDVSSALRPATQAVSFHAMRYLGWADAVGRELVQRYPSVLFESLLL 84 Query: 85 LLRV-------SVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 + + AQ+ + V A + VVD AV A + F ++N+ LRR RE+ Sbjct: 85 VSLTLLKEEGEAAAQLPGMPVYAAHTVVDQAVTAASTTRSLASFKGMLNACLRRFLRERA 144 Query: 137 ELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 L +A P W+ ++L Y ++ I ++ P + L V T Sbjct: 145 ALEAAVADSPEAQWNHPGWWVKQLGIAYPQDWQR-ILESANVPAPLTLRVNRRRATRDQV 203 Query: 193 LNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L A + P+ + LPGFAEG W VQDA A + +L + + V Sbjct: 204 LAAFQDAGLQAEPVGQAGVVVGSPKPVTQLPGFAEGWWSVQDAGAQLAAELLAPADGMRV 263 Query: 246 LDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-----EMDAF 299 LD C+APGGKTA L+ + + ALD RLE++ NLDRL L ++ + D Sbjct: 264 LDACSAPGGKTAHLLELADIDLVALDADGERLERVEQNLDRLGLASDRVHLEAADAADLD 323 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K FDAVL D PC+++G +RRHPD+ W R +D+ ++A Q ++L V PGG Sbjct: 324 AWWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQARILDSLWKTVAPGG 383 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++ CS+ + + ++ P L ++ P Sbjct: 384 RLLYVTCSVFPIEGARQALEFMQRHPEAQRLDAPG-------------------QLLPVA 424 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 L+ DGFF + Sbjct: 425 LDATPAEQH--DGFFYALFAK 443 >gi|213027901|ref|ZP_03342348.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 289 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 35/307 (11%) Query: 148 IPEWFKERLENFYGKERVLAIS-DACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRL 205 P W +RL+N Y + I + P+++ + + W L + Sbjct: 5 HPGWLVKRLQNAYPTQWQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPD 64 Query: 206 KE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258 P + +LPGFAEG VQDASA N +LDLCAAPGGKT Sbjct: 65 YPDAVRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHI 124 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDA 314 + A V A+D+ ++RL ++ NL RL + A + + D +C ++ FD +L+DA Sbjct: 125 LEVAPEADVLAVDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPAQWCGEQQFDRILLDA 183 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS+TG IRRHPD+ W R DI + A Q ++L +KPGG +V++ CS+ +++ Sbjct: 184 PCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENR 243 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 + ++ L+ +P ++ EG DGFF Sbjct: 244 DQIKAFLQRTPDAALSETGTPDQPGQQNLPGG--EEG-------------------DGFF 282 Query: 435 AVALRRL 441 L + Sbjct: 283 YAKLIKK 289 >gi|81879892|sp|Q922K7|NOP2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase NOP2; AltName: Full=Nucleolar protein 1; AltName: Full=Nucleolar protein 2 homolog; AltName: Full=Proliferating-cell nucleolar antigen p120; AltName: Full=Proliferation-associated nucleolar protein p120 gi|13938070|gb|AAH07151.1| NOP2 nucleolar protein homolog (yeast) [Mus musculus] Length = 793 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 134/327 (40%), Gaps = 32/327 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ +L + ++ +A P I L A L Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQLLINRGVN 319 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 439 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI + A Q++LLL I V K GG +V+ Sbjct: 440 DRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVY 499 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 500 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTR 552 Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444 + + MDGFF ++ + QP Sbjct: 553 RFYPHTHNMDGFFIAKFKKFSNSIPQP 579 >gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS] gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS] Length = 456 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 114/428 (26%), Positives = 172/428 (40%), Gaps = 39/428 (9%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96 AF + + V+A+ LR+L R +A+ + + P +L Sbjct: 43 AFEAVEPALRPGVQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTALGLAWDPERA 102 Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWF 152 + +VD AVE AKR+ R A +N+ LRR RE+ EL+ P W+ Sbjct: 103 PYEPFTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDELVAITDQEPVAQWNHPRWW 162 Query: 153 KERLENFYGKERVLAIS-DACISPLYIDLTVKFDIE-----TWAHKLNAVMLPTGGIRLK 206 E+L+ + ++ ++ D +P+ + + A Sbjct: 163 IEKLKRDHPRDWQRILNADNAQAPMTLRVNALKSTAAAYLSELEAAGLAATRVGASGLQL 222 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--------LNNLSVLDLCAAPGGKTAQ 258 + LPGFA+G VQDA+A + L + L VLD CAAPGGKTA Sbjct: 223 GRARPVQQLPGFADGACSVQDAAAQMAAPLLLEGLLPAKPGVAPLRVLDACAAPGGKTAH 282 Query: 259 ----LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLV 312 A+V AL+V R ++ L RL L A D+ FDA+L+ Sbjct: 283 LLELAGPGAAEVIALEVDPIRSRRIDETLARLGLQAKVVVADAARPADWWDGTPFDAILL 342 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPC+++G +RRHPDV W R D + A Q LL V+PGG +++ CS+ +++ Sbjct: 343 DAPCTASGIVRRHPDVRWLRRESDTAQLAGQQAALLAALWPLVRPGGRLLYCTCSVFREE 402 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 + + L L P G +R PD S DG Sbjct: 403 GSQQIDAFLA-HNTDARLQPSPGHLLPQSG--------GNVRGVPD------NPSGDHDG 447 Query: 433 FFAVALRR 440 FF L + Sbjct: 448 FFYALLEK 455 >gi|17547172|ref|NP_520574.1| hypothetical protein RSc2453 [Ralstonia solanacearum GMI1000] gi|17429474|emb|CAD16160.1| probable cog0144, trna and rrna cytosine-c5-methylase protein [Ralstonia solanacearum GMI1000] Length = 417 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 88/446 (19%), Positives = 162/446 (36%), Gaps = 55/446 (12%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 +L+ ++ ++ + + L R++ ++ LR Sbjct: 11 KVLARLLHFAAPADMIVSQYFREH--HELGHRERGIIAEAAFAVLRRKVEF----GQFAE 64 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S V+ ++ A R+ L R + Sbjct: 65 SG--------------------SGPARRRLVLLGLLQTAGREAIAPFLTPQEAEWLDRWA 104 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETW 189 L + +P+W + L +G+ ++ A ++P +DL V + + Sbjct: 105 IIDRTALAPR-VRANLPDWLFDALVAQHGQAFTETLAQAWLAPAPLDLRVNTLKGERDAV 163 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPG------FAEGVWWVQDASASIPVQLFGTLNNL 243 L + L + + P F G VQD + + QL + Sbjct: 164 LATLAQAGIEGAPAPLSPVGIRLAGKPALNKLDIFTNGTVEVQDEGSQLLCQLLAPKRSE 223 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CA GGKT + + S ++ A D+S++RL L L R L +D+ Sbjct: 224 MVVDFCAGAGGKTLAIGAAMRSTGRLYAFDISEKRLANLGPRLARSGLSNVHPARIDSEH 283 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ W + + + + Q +L +K Sbjct: 284 DAKVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAQAVEEMSAKQLSILASAARLLK 343 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CS+ +++++VV++ L V + + + I + M ++ + Sbjct: 344 AGGRLVYATCSVLARENQQVVEQFLAQHADFVLVPAGEALAAQKIPLEMGP----YLELY 399 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + DGFFA L R Sbjct: 400 PHV--------HQTDGFFAAVLERRA 417 >gi|39935271|ref|NP_947547.1| SUN-family protein, putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] gi|39649123|emb|CAE27643.1| SUN-family protein, putative RNA methyltransferase [Rhodopseudomonas palustris CGA009] Length = 433 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 98/464 (21%), Positives = 162/464 (34%), Gaps = 57/464 (12%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + L++ + +RI L + D+ + +V LR Sbjct: 1 MTP--AARLSAAIDLIAAIDAQRIPAAKALKEWGTAHRYAG--SGDRSAIAGVVWDVLRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +++ + +L++ A A +R Sbjct: 57 RASCAYLMEADTPR------ARVLGMLKL-------------ERGMTAEAIAALCDGSRF 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + ++ + PEW L E +A + A S +D Sbjct: 98 APEPLSDAEHAALSTRTLDGAPPHVAGDYPEWLDGAL-AEMFGEARVAEAAAMASRAPLD 156 Query: 180 LTVKFDIETWAHKL------NAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQD 227 L V + +L A + P L+ + + + P F +G VQD Sbjct: 157 LRVNTLKASRDKELASLAHLGAKLAPWSPWGLRIELPADARNPGVQAEPDFIKGAVEVQD 216 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLD 284 + + L V+DLCA GGKT A ++ ++ A D KR+L + L Sbjct: 217 EGSQLAALLSAARPGEQVIDLCAGAGGKTLALAAMMQGKGRLIATDGDKRQLAPIHERLS 276 Query: 285 RLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 R ++ ++ K D VLVDAPC+ TGT RR+PD W + Sbjct: 277 RAGVHNAEVRAPKGDADPLADIKGSADLVLVDAPCTGTGTWRRNPDAKWRMRPGALEIRL 336 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----- 396 Q ++L + VKPGG + + CS+ ++ VQ + P + P A Sbjct: 337 KDQAEVLARAARLVKPGGRIAYITCSVLAPENTGQVQAFTAAHPEFAVVPPAEVAAALWD 396 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A +SPEG + + +G DGFF L+R Sbjct: 397 KAELFLAAAWISPEGLL---------MTPRRTGTDGFFVSVLKR 431 >gi|121596181|ref|YP_988077.1| sun protein [Acidovorax sp. JS42] gi|120608261|gb|ABM44001.1| sun protein [Acidovorax sp. JS42] Length = 457 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 113/458 (24%), Positives = 178/458 (38%), Gaps = 54/458 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ + S T L+ + V+A++ LR L R A+ Sbjct: 25 ALALQAVRA----GQSGTVALETTAAAL---------RPGVQALLFQVLRHLGRAQALRR 71 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + P + +L A + +V+ AVE AKR R A VN+ L Sbjct: 72 QLAPRNPPPRVDALLCTALALAWDPQAAPYAPFTLVNQAVEAAKRHPATRAQASFVNACL 131 Query: 129 RRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK 183 RR RE+ + P W+ +RL + + + + ++ Sbjct: 132 RRFLRERDTLVAATQGDEVAVWNHPAWWIQRLRRDHPDQWQQILQANNAPAPMVLRISKS 191 Query: 184 FDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPV---- 234 + + E P + LPGFAEGV VQDA+A + Sbjct: 192 KSTPALYQQALEAINIEAMAVGPEGLALARPVPVQQLPGFAEGVVSVQDAAAQMAAPLLL 251 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSG------AKVTALDVSKRRLEKLRCNLDRLHL 288 L +LD CAAPGGKTA L+ +VTAL+V R E++ NL RL L Sbjct: 252 NGLDAAQPLRLLDACAAPGGKTAHLLEWAAALRAPWRVTALEVDAARAERIHDNLHRLGL 311 Query: 289 YAEDIIE-----MDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 A+ ++ D + +LFDA+L+DAPC+++G +RRHPDV W R D+ + A Sbjct: 312 SAQVLVADAAVPADWWQQASGGELFDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLAA 371 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++PGG +++ CS+ + + + + L + L + D Sbjct: 372 QQSRLLAALWPLLRPGGRLLYCTCSVFRAEGDGQIAAFLAHNTDARLLPSPGHLFPGRPD 431 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L G DGFF L + Sbjct: 432 KRDGLRDNG---------------PGEHDGFFYALLHK 454 >gi|325272515|ref|ZP_08138891.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51] gi|324102349|gb|EGB99819.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51] Length = 358 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 104/373 (27%), Positives = 163/373 (43%), Gaps = 37/373 (9%) Query: 88 VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIA 143 V + Q+ Y + +A + V A + K+ L+N++LRR RE + + Sbjct: 1 VGLYQLFYTRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRRAQREGEALLAGMERDPV 59 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPT 200 + P W ++ L+ F+ E+ AI A + + L V + + L + Sbjct: 60 VRTAHPRWLQKALKAFWP-EQWEAICAANNAHPPMILRVNRRHHSRDAYLGLLADAGVAA 118 Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + LPGFAEG VQD +A + L VLD C APGG Sbjct: 119 SACPYSRDGIVLAEACDVRGLPGFAEGWVSVQDEAAQLSADLLELAAGQRVLDACCAPGG 178 Query: 255 KTAQLIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDA 309 KT L+ + +TA+D+ +RL ++R NLDRL L A D + K F Sbjct: 179 KTCHLLEAEPGLAHLTAIDLEGKRLNRVRENLDRLQLDAELIACDARDTASWWDGKPFQR 238 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS+TG IRRHPD+ TR DDI A Q +LL ++ GG+++++ CS Sbjct: 239 ILLDAPCSATGVIRRHPDIKLTRQADDIPALAALQGELLDALWPTLEVGGMLLYATCSSL 298 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ +V++ L + EL A + L+ EG G Sbjct: 299 PTENTQVIEAFLARTAGARELDLATEAGLRQPHGRQLLAQEG-----------------G 341 Query: 430 MDGFFAVALRRLI 442 DGF+ L ++ Sbjct: 342 HDGFYYAKLIKIA 354 >gi|149372985|ref|ZP_01891941.1| putative sun protein [unidentified eubacterium SCB49] gi|149354345|gb|EDM42912.1| putative sun protein [unidentified eubacterium SCB49] Length = 403 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 76/456 (16%), Positives = 154/456 (33%), Gaps = 69/456 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L + + +L RD+ + +R+ Sbjct: 1 MRLHRNLVFATIDSLVLIFNEGKQADKVLKNTLKRDKRWG--ARDRGFIAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + D + R L R+ V R + + Sbjct: 59 RLYAEIAD--VNEPFDRG-----NLFRM-----------------FTVWATLRGIKIPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + ++ RR+ E + IP+W E N GK+ + + + L Sbjct: 95 PQFEDTPTRRIKGRFDEFSKIRKIRESIPDWLDEVGVNELGKKWDKEL-ASLNQLAPVVL 153 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKEL---------PESIVSLPGFAEGVWWVQDASAS 231 V N + + ++ + F G + VQDA++ Sbjct: 154 RVNTLKAKVIDVKNQLSDLDIETISVKGVPNALVLKERANVFTTDAFKNGWFEVQDANSQ 213 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + ++D CA GGK+ ++ + ++ ++D+ + +L++L+ R Sbjct: 214 KVALMLDPKPGQRIVDACAGAGGKSLHISEMMENKGQLISMDIYESKLKELKRRAKRNGA 273 Query: 289 YAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D+ K D VL+DAPCS G ++R+PD W D + + Q++ Sbjct: 274 HNIETRVIDSTKVIKKLHSSADKVLIDAPCSGLGVLKRNPDTKWKMQPDFLDRIRTLQKE 333 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAM 405 LL VK G ++++ CS+ ++E+ V+ L+ EL N Sbjct: 334 LLRDYSKMVKEDGELLYATCSILPSENEQQVKAFLKTEEGASFELKKENK---------- 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++G DGF+ +++ Sbjct: 384 -----------------VSPSATGFDGFYMALMKKK 402 >gi|325849117|ref|ZP_08170609.1| putative ribosomal RNA small subunit methyltransferase B [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480362|gb|EGC83425.1| putative ribosomal RNA small subunit methyltransferase B [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 426 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 83/453 (18%), Positives = 171/453 (37%), Gaps = 51/453 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + K T +++ + + D + + L ++ ++ Sbjct: 5 KLILDGLYRICYKNEKSTDIINNIAREVS-------DISYITKNIYGVLENKLYLEYIIG 57 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE------NRHFAK 122 + + + + +L + + I +LD +YA+V+ V K+ N Sbjct: 58 KLSKIKIKKLDKKVLLILEIGIYNIHFLDRKNYAIVNELVNLTKKVSYKSKSFVNAILRS 117 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + + Q + IP W L YG + ++ + + V Sbjct: 118 YIRDEENLSKIKAKNKEQFQSIKYSIPLWIINNLNESYGYDYTEKFLNSLNKERKLSIRV 177 Query: 183 KFDI------ETWAHKLN---AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + +T + + + + P S+ F EG++ +Q ++ Sbjct: 178 NKNKIEKNKLKTLLEEKGYEVEESKISSRSLIVKNPRSLADTKEFKEGLFTIQSEASIKV 237 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 ++ N +LDLCAAPG KT+ L + +++ A D+S +L K+ N+ RL L Sbjct: 238 CEVLNPEKNSQILDLCAAPGTKTSFLAELCENSSRIVANDISFNKLSKINENIKRLGLKN 297 Query: 291 EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I DA + FD VL D PCS G + R P++ + R +D++ + Q+ +L Sbjct: 298 IEITNFDASIVKDEYKEKFDYVLCDLPCSGLGVMDRKPEIRYNRTMEDVINLSKLQKNIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + ++K GGI+VFS C++ ++++ K + ++ Sbjct: 358 DRAFLYLKKGGIMVFSTCTIGNIENKDN----------------FTYLSKKKSLKNIKIN 401 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E ++ + + DGFF ++ Sbjct: 402 GEEYL--------EYNTFEDETDGFFLTKFEKI 426 >gi|167561034|ref|ZP_02353950.1| sun protein [Burkholderia oklahomensis EO147] Length = 470 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 97/414 (23%), Positives = 166/414 (40%), Gaps = 34/414 (8%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD----VADY 101 + ++ I +R D ++ + + + LL + A ++ D A + Sbjct: 71 RGAIQDIAYRAVRRRGTADWLIAQFVAKAP---HAHVHALLVCAFALLVDDDEHAAYAPF 127 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLE 157 VVD AV +E LVN++LRR RE+ W+ + +E Sbjct: 128 TVVDQAVTAVGARRECSFAKGLVNAVLRRFLRERAAWLKRLQSDRRARWNYETWWIDAVE 187 Query: 158 NFYGKERVLAISDACISPL-YIDLTVKFDIETW------AHKLNAVMLPTGGIRLKELPE 210 + ++ + + + A +++A + IRL P Sbjct: 188 RAWPDAWQRMLAAGDAPGPLTLRVNARRMTADAYLDVLRAEQIDAEKIGRHAIRLA-SPL 246 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTAL 269 + +PGF +G+ VQDA A + + G + + VLD CAAPGGKT ++ + A+V AL Sbjct: 247 PVERIPGFVDGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVVAL 306 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + R ++ NL RL L A+ D + + FD +L D PCS++G +RRHPD Sbjct: 307 ESDPARAPRIGENLARLSLAADVRIGDAGDPAQWHDGRPFDRILADVPCSASGIVRRHPD 366 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R DI QR++L VK GG ++++ CS+ ++ E + + Sbjct: 367 IRWLRRAADIPALVAEQRRILAALWPLVKLGGELLYATCSIFPEEGELQARWFGGAYQDA 426 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS-GMDGFFAVALRR 440 V L + P + + DGFF ++ Sbjct: 427 VRLDAPGQLLPQGASGGA-----------PAVGGSSEPGRHVDHDGFFYARFQK 469 >gi|212695669|ref|ZP_03303797.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM 7454] gi|212677342|gb|EEB36949.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM 7454] Length = 426 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 172/453 (37%), Gaps = 51/453 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + K T +++ + + D + + L ++ ++ Sbjct: 5 KLILDGLYRICYKNEKSTDIINDIAREVS-------DISYITKNIYGVLENKLYLEYIIG 57 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE------NRHFAK 122 + + + + +L + + I +LD +YA+V+ V K+ N Sbjct: 58 KLSKIKIKKLDKKVLLILEIGIYNIHFLDRKNYAIVNELVNLTKKVSYKSKSFVNAVLRS 117 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + + Q + IP W + L YG + ++ + + V Sbjct: 118 YIRDEENLSKIKAKNKDQFQSIKYSIPLWIIKYLNESYGYDYTEKFLNSLNKKRKLSIRV 177 Query: 183 KFDI---ETWAHKLN------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + + L A + + + P S+ F +G++ +Q ++ Sbjct: 178 NENKIYKNKLKNLLEDKGYQLAESKISSRSLIVKNPSSLADTEEFKKGLFTIQSEASIKV 237 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 ++ N +LDLCAAPG KT+ L + +++ A D+S +L K+ N+ RL L Sbjct: 238 CEVLSPEKNSQILDLCAAPGTKTSFLAELCENSSRIVANDISFNKLSKINENIKRLGLKN 297 Query: 291 EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 +I DA + FD +L D PCS G + R P++ + R +D++ + Q+ +L Sbjct: 298 IEITNFDASIVKDEYKEKFDYILCDLPCSGLGVMDRKPEIRYNRTMEDVINLSKLQKNIL 357 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + ++K GGI+VFS C++ ++++ K + ++ Sbjct: 358 DRAFLYLKKGGIMVFSTCTIGNIENKDN----------------FTYLSKKKSLKNIKIN 401 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E ++ + + DGFF ++ Sbjct: 402 GEEYL--------EYNTFEDETDGFFLTKFEKI 426 >gi|218531110|ref|YP_002421926.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4] gi|218523413|gb|ACK83998.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4] Length = 449 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 89/458 (19%), Positives = 152/458 (33%), Gaps = 57/458 (12%) Query: 7 ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + +L + +R L + D+ + ++V LR Sbjct: 25 ARLSAAIEILDDIAERRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 82 Query: 66 VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 V+ + +LR+ +A+ A R Sbjct: 83 VMGAQTGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 121 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + R+ E P + L + +L A +D+ V Sbjct: 122 LTEDERKRLAEGSLADAPPEVAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 180 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231 ++ A+ + ++ P F EG + +QD + Sbjct: 181 TLKQSREEAFAALADLSPETTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 240 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 I L G +V+DLCA GGK A + + A + A D RRL + L R Sbjct: 241 IASLLAGAKPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 300 Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 E D VLVDAPC+ TGT RR+PD W + Sbjct: 301 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 360 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + ++PGG +V+ CSL ++++ V+ +L+ + V + A +D Sbjct: 361 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVEGLLQR-SGAIRPVATDLAPVPGLDE 419 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G ++ +G DGF+ L R Sbjct: 420 KVRKTARG---------IQMSPALTGTDGFYVATLTRK 448 >gi|315121833|ref|YP_004062322.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495235|gb|ADR51834.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 429 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 160/450 (35%), Gaps = 48/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L ++ + T L F D++ + IV LR ++D Sbjct: 8 AAAIEILKDIIFYKKPATNALKDWGASHRFAG--SSDRVSISNIVYDVLRKYLSNAYIMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 Y + ++ I ++ + + +E+R + Sbjct: 66 D------DNPDYLVYAVI------IKEWNI-------SLEDISTILREDRFAPLFPKESI 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + + IP+W + Y K+ L + + + +DL Sbjct: 107 IKSLHSRQLENAPLHIQGNIPQWL-QSSIQSYFKDNWLEETKSLSTRPPLDLRTNTLKVN 165 Query: 189 WAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQ 235 + ++ + F G + VQD + I Sbjct: 166 RQKLFKNLQHHGVRYSSISRFGLRIAATKAQSRLPNVTNEISFQRGWFEVQDEGSQIVSD 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L T + +LD CA GGKT + L+ + ++ A D +K R+ + + R ++ Sbjct: 226 LTATKQSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDKNKSRIAPIVARIKRAGIHNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + ++ F VLVDAPCS TGT RR PD+ W ++++ Q+K++ + Sbjct: 286 LHSNLESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSPKNLMERIEEQKKIMQEAA 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPE 410 FV+ GG +V+ CS+ +++ + + L + P +V + + + Sbjct: 346 KFVRLGGYLVYITCSILPEENIQQINNFLDNHPHFRIDSIVDNWNELYDLKNPPSLFIEN 405 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +TP + DGFF L+R Sbjct: 406 GCCILTP--------FLTNTDGFFFCRLKR 427 >gi|33591772|ref|NP_879416.1| hypothetical protein BP0569 [Bordetella pertussis Tohama I] gi|33571415|emb|CAE44897.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332381189|gb|AEE66036.1| hypothetical protein BPTD_0578 [Bordetella pertussis CS] Length = 444 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 118/453 (26%), Positives = 178/453 (39%), Gaps = 61/453 (13%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 +RK SLT L + V+AI +R L DAV + ++ S Sbjct: 26 QAVRKGRSLTDALAET---------PPALRPAVQAISFHAMRQLGWADAVAETLVRRSP- 75 Query: 77 RKKYSLQQLLRVSVAQILYLDV----------ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LLRV+++ + A + VVD AV A ++ + L+N+ Sbjct: 76 --GPLFDALLRVALSLLRPAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNA 133 Query: 127 ILRRVSREKIELLQ----RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LRR RE+ L R A P W+ E LE Y ++ I P + L V Sbjct: 134 SLRRFLREREALQDSVAERPAARWNHPRWWVELLERAYP-DQWRGILAGANVPAPLTLRV 192 Query: 183 KFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T A+ + P + LPG+ G W VQDA A + Sbjct: 193 NRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYGAGWWSVQDAGAQLAAP 252 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + + VLD CAAPGGKTA L+ + + ALD +RLE++ NL+RL L + Sbjct: 253 LLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADVQRLERVDQNLERLGLRTPRVR 312 Query: 295 EMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 A + + FDAVL D PC+++G +RRHPD+ W R D+ ++A Q ++ Sbjct: 313 LAAADASDLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAKDVPRTAALQARIAD 372 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V PGG +++ CS+ + E + R L Sbjct: 373 ALWRTVAPGGRLLYVTCSVFPAEGREQAEAFARRHADAAPLDAPG--------------- 417 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P ++ DGFF + Sbjct: 418 ----QLLPVAIDATPQAQH--DGFFYALFAKRT 444 >gi|150024790|ref|YP_001295616.1| ribosomal RNA small subunit methyltransferase B [Flavobacterium psychrophilum JIP02/86] gi|149771331|emb|CAL42800.1| Ribosomal RNA small subunit methyltransferase B [Flavobacterium psychrophilum JIP02/86] Length = 404 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 158/456 (34%), Gaps = 66/456 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L+ + + ++ D+ V + +R+ Sbjct: 1 MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWG--SSDRKFVAETIYEIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + + R R+ R + Sbjct: 59 RLYSEIAE--VKEPFDRDNIW-----RMFA-----------------SWAVMRGYTIPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 +L + R++ EL + A IP+W G++ A P + L Sbjct: 95 RQLEGTPERKIKGRFDELSKTRAIKESIPDWIDALGVKELGEKIWATEIAAQNQPAKVIL 154 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASAS 231 E L + + T ++ + + ++ F +G + VQDA++ Sbjct: 155 RTNTLKTTREKLRAILMDLNIDTDTLKDQPDALVLKERANVFLTDAFKQGFFEVQDANSQ 214 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + V+D CA GGKT L + + ++ A+D+ + +L++L+ R Sbjct: 215 LVAAFLDVKPGMRVVDTCAGAGGKTLHLASLMENKGQLIAMDLYESKLKQLKLRAKRNGA 274 Query: 289 YAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D+ K + D VL+DAPCS G ++R+PD W + I Q + Sbjct: 275 FNIEYKIIDSTKVIKKLAEKADRVLIDAPCSGLGVLKRNPDAKWKLQPEFIENIKKIQAE 334 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L VKPGG +V++ CS+ +++E ++K L Sbjct: 335 VLESYSRIVKPGGKLVYATCSILPSENQEQIEKFL------------------------- 369 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + E T KI SG DGF+ L R Sbjct: 370 -TTETGKSFTFIEDRKILASESGFDGFYMALLERKA 404 >gi|167617463|ref|ZP_02386094.1| sun protein [Burkholderia thailandensis Bt4] gi|257140661|ref|ZP_05588923.1| sun protein [Burkholderia thailandensis E264] Length = 470 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 34/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + A + + ++ I +R D ++ + Sbjct: 38 AAQAVDAVTRGAALPAALAAVHATLPANARAAS--RGAIQDIAYRAMRRRGTADWLIAQL 95 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLD----VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + LL + A ++ D A + VVD AV +E LVN+ Sbjct: 96 VAKAPP---AHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNA 152 Query: 127 ILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LRR RE+ W+ + +E + ++ + + Sbjct: 153 VLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVN 212 Query: 182 VKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + A +++A + IRL + +PGFA+G+ VQDA A + + Sbjct: 213 ARRMTADAYLDVLRAERIDAEKVGRHAIRLASAL-PVERIPGFADGIVSVQDAGAQLAAE 271 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 272 WLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLAADVRV 331 Query: 294 -IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 332 GDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALW 391 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 VKPGG ++++ CS+ ++ E + + V L + + Sbjct: 392 PLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAA---- 447 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 G DGFF ++ Sbjct: 448 ------GGSDEPGRHVDHDGFFYARFQK 469 >gi|254562098|ref|YP_003069193.1| SUN-family protein, RNA methyltransferase [Methylobacterium extorquens DM4] gi|254269376|emb|CAX25342.1| putative SUN-family protein, RNA methyltransferase [Methylobacterium extorquens DM4] Length = 449 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 89/458 (19%), Positives = 151/458 (32%), Gaps = 57/458 (12%) Query: 7 ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + +L + +R L + D+ + ++V LR Sbjct: 25 ARLSAAIEILDDIADRRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 82 Query: 66 VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 V+ + +LR+ +A+ A R Sbjct: 83 VMGAETGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 121 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + R+ E P + L + +L A +D+ V Sbjct: 122 LTEDERKRLAEGSLADAPPDIAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 180 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231 ++ A+ + ++ P F EG + +QD + Sbjct: 181 TLKQSREEAFAALADLSPETTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 240 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 I L G +V+DLCA GGK A + + A + A D RRL + L R Sbjct: 241 IASLLAGAKPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 300 Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 E D VLVDAPC+ TGT RR+PD W + Sbjct: 301 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 360 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + ++PGG +V+ CSL ++++ V +L+ + V + A +D Sbjct: 361 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQR-SGAIRPVATDLAPVPGLDE 419 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G ++ +G DGF+ L R Sbjct: 420 KVRKTARG---------IQMSPALTGTDGFYVATLTRK 448 >gi|313207277|ref|YP_004046454.1| fmu (sun) domain protein [Riemerella anatipestifer DSM 15868] gi|312446593|gb|ADQ82948.1| Fmu (Sun) domain protein [Riemerella anatipestifer DSM 15868] Length = 402 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 80/444 (18%), Positives = 164/444 (36%), Gaps = 70/444 (15%) Query: 12 SHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L K +++ + +D+ +V I +R+ R++ + Sbjct: 13 HDALRETFFEKNKYADKVIERLLKANKKWG--SQDRAVVSEIFYNIIRWKKRLEYYMGEG 70 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + R+ +A +L+ + K+ F + + + Sbjct: 71 VKPN---------NIYRLVLAYLLWSETH--------------YKKFEEFDGIKIADI-- 105 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIET 188 +++ K + A IPEW E LE G+ ++ + T+K + Sbjct: 106 ITKLKKNTVPTKAIEHSIPEWLAETLEKELGEAWEKEMTALNQQAATVLRANTLKTTPKE 165 Query: 189 WAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 LN + ++ +++ F +G++ VQDA + Sbjct: 166 LVADLNDEGVECHSLKNYPEAIELKEKKNVFLTSAFKDGLFEVQDAGSQKIAHFLEVKEG 225 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMD 297 + V+D CA GGKT + + + ++ ALD+ + +L +L+ R + + E + Sbjct: 226 MRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGAHNIETRFIEDN 285 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + D +L+D PCS G ++R+PD W D D I + Q+++L +K Sbjct: 286 KVIKRLHEKADRLLLDVPCSGLGVLKRNPDSKWKIDADFIERIKTEQQQILQDYSKILKK 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ +++ V L ++P + + + P Sbjct: 346 GGKMVYATCSILPSENQNQVNTFLATNPNFRLIKDQS--------------------LLP 385 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 S G DGF+ + RL Sbjct: 386 ---------SEGYDGFYMALIERL 400 >gi|213961681|ref|ZP_03389947.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga sputigena Capno] gi|213955470|gb|EEB66786.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga sputigena Capno] Length = 403 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 158/454 (34%), Gaps = 69/454 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L+ + + +++ + RD+ + + +R+ Sbjct: 1 MKLHRNLVDAVIEGLTFIFNEGQYADKVVEKQLKKDKRWG--ARDRAFIAETIYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + + +++ L R+ +V K Sbjct: 59 RLYAEIAEVH-------EPFTVHNLRRMFAVW-----------------ATLKSITLPDW 94 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ RR+ + EL + +P+W G+ A + + Sbjct: 95 GNYFEDTPARRIKGKFDELSKLRKFRESVPDWLDALGVKELGETLWTDELHALNTLAPVV 154 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230 L V +E L + T +R +I FA+G++ VQDAS+ Sbjct: 155 LRVNTLKTSLERLQQFLRQEKIETYPLRDYPNALQLVERGNIFKTQAFADGLFEVQDASS 214 Query: 231 SIPVQLFG-TLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRL 286 V V+D CA GGKT + + +V A+D+ +++L++L+ R Sbjct: 215 QKVVPFMQIDDKVKRVIDTCAGAGGKTLHIANLLQNKGQVIAMDIYEQKLQELKRRARRN 274 Query: 287 HLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + +D + D VL+DAPCS G +RR+PD W + + + Q+ Sbjct: 275 GAFNIETKLIDPKQLKRMQGTADRVLIDAPCSGLGVLRRNPDAKWKLRPEFLDEIRATQQ 334 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMA 404 ++L Q +K GG +V++ CS+ ++ + V+K L + L + Sbjct: 335 EILQQYSKLLKKGGKLVYATCSILPSENHQQVEKFLASEAGKDFRLEAEEVIFA------ 388 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 SG DGF+ L Sbjct: 389 ---------------------HQSGYDGFYMARL 401 >gi|118764303|gb|AAI28185.1| NOP2 protein [Homo sapiens] Length = 812 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R+ P + Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRLHPSLRSTR 567 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586 >gi|291392735|ref|XP_002712919.1| PREDICTED: nucleolar protein 1, 120kDa [Oryctolagus cuniculus] Length = 809 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 134/327 (40%), Gaps = 32/327 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 272 ATYYSYGDFLLSKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 331 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 332 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 391 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 392 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHHDGRHFPKVVGGF 451 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 452 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNAASKTGGYLVY 511 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 512 CTCSVMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 564 Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444 + + MDGFF ++ + QP Sbjct: 565 RFYPHTHNMDGFFIAKFKKFSNSVPQP 591 >gi|240139687|ref|YP_002964164.1| putative SUN-family protein, RNA methyltransferase [Methylobacterium extorquens AM1] gi|240009661|gb|ACS40887.1| putative SUN-family protein, RNA methyltransferase [Methylobacterium extorquens AM1] Length = 449 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 89/458 (19%), Positives = 152/458 (33%), Gaps = 57/458 (12%) Query: 7 ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + +L + +R L + D+ + ++V LR Sbjct: 25 ARLSAAIEILDDIADRRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 82 Query: 66 VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 V+ + +LR+ +A+ A R Sbjct: 83 VMGAQTGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 121 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + R+ E P + L + +L A +D+ V Sbjct: 122 LTEDERKRLAEGSLADAPPEVAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 180 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231 ++ A+ + ++ P F EG + +QD + Sbjct: 181 TLKQSREEAFAALADLSPETTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 240 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 I L G + +V+DLCA GGK A + + A + A D RRL + L R Sbjct: 241 IASLLAGAKSGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 300 Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 E D VLVDAPC+ TGT RR+PD W + Sbjct: 301 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 360 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + ++PGG +V+ CSL ++++ V +L+ + V + A +D Sbjct: 361 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQR-SGAIRPVATDLAPVPGLDE 419 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G ++ +G DGF+ L R Sbjct: 420 KVRKTARG---------IQMSPALTGTDGFYVATLTRK 448 >gi|332838381|ref|XP_003313492.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Pan troglodytes] Length = 628 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 563 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582 >gi|297198310|ref|ZP_06915707.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sviceus ATCC 29083] gi|297147058|gb|EDY59597.2| ribosomal RNA small subunit methyltransferase B [Streptomyces sviceus ATCC 29083] Length = 399 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 87/411 (21%), Positives = 151/411 (36%), Gaps = 41/411 (9%) Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 +R DA++ + L + +L + Q+L + +A V +VE A+ Sbjct: 1 MRRQGTYDAIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLG 60 Query: 117 NRHFAKLVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKE 163 + AK VN++LR+++++ ++ +A + P W L + G Sbjct: 61 D-GRAKFVNAVLRKIAQDDLDGWIAKVAPPYDDDPEDHLALVHSHPRWVVSALWDSLGGG 119 Query: 164 RV--LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPG 217 R + +A + L + T L G + ++ Sbjct: 120 RAGIERLLEADNERPEVTLVARPGRATAEELLREESAVPGRWSPYAVRLAEGGEPGAVDA 179 Query: 218 FAEGVWWVQDASAS----IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----SGAKVTAL 269 EG VQD + + + LD CA PGGK A L GA + A Sbjct: 180 VREGRAGVQDEGSQLVALALANVPVEGRDEKWLDGCAGPGGKAALLAALAAERGAMLLAS 239 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + R + L + I FD VL+D PC+ G +RR P+ Sbjct: 240 EKQPHRAGLVAKALAGNPGPYQVIAADGTRPPWQPGSFDRVLMDVPCTGLGALRRRPEAR 299 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R +D+ QR+LL + V+ GG+V ++ CS ++ VV+ VL+ P E Sbjct: 300 WRRRPEDLEGFGPLQRELLSTAVESVRVGGVVGYATCSPHLAETRAVVEDVLKQWPG-AE 358 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LV + ++ +++ P + G D + +RR Sbjct: 359 LVDARPLFPGVPELGEGPD----VQLWPHV--------HGTDAMYLAVIRR 397 >gi|114643065|ref|XP_001162353.1| PREDICTED: nucleolar protein 1, 120kDa isoform 3 [Pan troglodytes] Length = 812 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 567 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586 >gi|114643069|ref|XP_508956.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 4 [Pan troglodytes] Length = 845 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 308 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 367 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 368 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 427 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 428 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 487 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 488 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 547 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 548 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 600 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 601 RFYPHTHNMDGFFIAKFKK 619 >gi|114643067|ref|XP_001162313.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2 [Pan troglodytes] gi|332838378|ref|XP_001162276.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1 [Pan troglodytes] Length = 808 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQERRFHPSLRSTR 563 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582 >gi|220921294|ref|YP_002496595.1| Fmu (Sun) domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219945900|gb|ACL56292.1| Fmu (Sun) domain protein [Methylobacterium nodulans ORS 2060] Length = 427 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 97/459 (21%), Positives = 157/459 (34%), Gaps = 61/459 (13%) Query: 1 MKSGMNARLVSS-HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL ++ +L+ + +R + L F D+ + ++V LR Sbjct: 1 MTPS--ARLAAAIEVLADIAARRRPVADALKDWGLAHRFAG--SGDRAAIASLVYDALRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKEN 117 ++ L LR+ +A A Sbjct: 57 RASAAWIMGEDTPR------AVLIGTLRLQRGLA---------------GQTIAGLFTGE 95 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 R + R +PEW L G + +L A Sbjct: 96 RFAPAPLTQAERTRLDTATLADAPPHIAGDVPEWVLPSLVRILGDD-LLPELKALARRAP 154 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSL---------PGFAEGVWWV 225 +D+ V D E L + L + P F EG++ + Sbjct: 155 LDIRVNTLKADRERVREGLAHLDPAPTPHAPHGLRVPVPDDGRGPALHVEPEFLEGLFEI 214 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCN 282 QD + + L G V+DLCA GGKT A ++ + ++ A D RRL + Sbjct: 215 QDEGSQLAALLSGARPGEMVIDLCAGGGGKTLALAAMMENRGRLVATDGDPRRLAPIHER 274 Query: 283 LDRLHLYAEDI-----IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L R AE + D VLVDAPC+ +GT RR+PD W + Sbjct: 275 LRRAGAAAEVRTPRGSRAAPEVLADLQGQADLVLVDAPCTGSGTWRRNPDAKWRLRPGSL 334 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +L + +KPGG +V+ CSL ++++E V +L P L Sbjct: 335 ATRRSDQAAVLDRAARLLKPGGRLVYVTCSLLPEENDEAVGGILTRQPG---LTIRPPTL 391 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 +++ A+ + G +++TP +G DGF+ Sbjct: 392 APTLEAALRRTAHG-VQLTP--------ARTGTDGFYVS 421 >gi|119609186|gb|EAW88780.1| nucleolar protein 1, 120kDa [Homo sapiens] Length = 606 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 69 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 128 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 129 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 188 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 189 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 248 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 249 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 308 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 309 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 361 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 362 RFYPHTHNMDGFFIAKFKK 380 >gi|116284068|gb|AAH82985.1| NOP2 protein [Homo sapiens] Length = 628 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 563 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582 >gi|76150623|ref|NP_006161.2| putative ribosomal RNA methyltransferase NOP2 [Homo sapiens] gi|76150625|ref|NP_001028886.1| putative ribosomal RNA methyltransferase NOP2 [Homo sapiens] gi|112180609|gb|AAH65257.1| NOP2 nucleolar protein homolog (yeast) [Homo sapiens] gi|193786365|dbj|BAG51648.1| unnamed protein product [Homo sapiens] Length = 808 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 271 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 330 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 331 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 391 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 450 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 451 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 510 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 511 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 563 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 564 RFYPHTHNMDGFFIAKFKK 582 >gi|189422|gb|AAA36398.1| proliferating cell nuclear protein P120 [Homo sapiens] Length = 869 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 289 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 348 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 349 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 408 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 409 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 468 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 469 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 528 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 529 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 581 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 582 RFYPHTHNMDGFFIAKFKK 600 >gi|146289861|sp|P46087|NOP2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase NOP2; AltName: Full=Nucleolar protein 1; AltName: Full=Nucleolar protein 2 homolog; AltName: Full=Proliferating-cell nucleolar antigen p120; AltName: Full=Proliferation-associated nucleolar protein p120 gi|12653741|gb|AAH00656.1| NOP2 protein [Homo sapiens] gi|118764015|gb|AAI28184.1| NOP2 protein [Homo sapiens] Length = 812 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 567 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586 >gi|76779860|gb|AAI06073.1| NOP2 protein [Homo sapiens] Length = 845 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 308 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 367 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 368 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 427 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 428 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 487 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 488 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 547 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 548 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 600 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 601 RFYPHTHNMDGFFIAKFKK 619 >gi|287723|emb|CAA39119.1| P120 antigen [Homo sapiens] Length = 855 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGF 454 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 455 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 514 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 515 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 567 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 568 RFYPHTHNMDGFFIAKFKK 586 >gi|146302508|ref|YP_001197099.1| Fmu (Sun) domain-containing protein [Flavobacterium johnsoniae UW101] gi|146156926|gb|ABQ07780.1| Fmu (Sun) domain protein [Flavobacterium johnsoniae UW101] Length = 404 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 164/459 (35%), Gaps = 74/459 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + L+ + + ++ D+ V + +R+ Sbjct: 1 MRLHRNLVYTTIDSLNAIFNEGEYADKVVARALKKDKRWG--SSDRKFVAETIYEIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYS----LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + + + R + +LR Sbjct: 59 RLYAEIAE--VKEPYDRDNLWRMFAVWAVLR--------------------------GYP 90 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + +L + R++ EL + A IP+W E G++ A P Sbjct: 91 IPDWRQLEGTPERKIKGRFDELSKVRALKESIPDWMDELGVKELGEKIWSKEITAQNQPA 150 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 + L E+ + L + + T ++ + + ++ F +G++ VQD Sbjct: 151 KVILRTNTLKGTKESLRNTLMDLNIETEYLKDQPEALVLKERANVFLTDAFKQGLFEVQD 210 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 A++ + + V+D CA GGKT + + + ++ A+D+ + +L++L+ Sbjct: 211 ANSQLVAGFLDVKPGMRVVDTCAGAGGKTLHIASLMENKGQLIAMDLYESKLKQLKLRAK 270 Query: 285 RLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + +D K + D VL+DAPCS G ++R+PD W + I Sbjct: 271 RNGAFNIEYRIIDTTKVIKKLHEKADRVLIDAPCSGLGVLKRNPDSKWKLQPEFIDNIRK 330 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q ++L VKPGG +V++ CS+ +++E V+K L++ Sbjct: 331 VQSEVLESYSKIVKPGGKLVYATCSVLPSENQEQVEKFLKT------------------- 371 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + T K+ SG DGF+ + R Sbjct: 372 -------EIGQQFTFIEDRKLLASESGFDGFYMALMERK 403 >gi|89902354|ref|YP_524825.1| sun protein [Rhodoferax ferrireducens T118] gi|89347091|gb|ABD71294.1| sun protein [Rhodoferax ferrireducens T118] Length = 454 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 114/454 (25%), Positives = 182/454 (40%), Gaps = 50/454 (11%) Query: 12 SHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ V+ +S T L+ D + V+++V LR L R +A+ Sbjct: 27 LQAVAAVLLGVRAGMSATAALEGVTADL---------RPGVQSLVFHALRSLGRAEALRQ 77 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVAD--YAVVDLAVEQAKRDKENRHFAKLVNS 126 + S P + L D + +V+ VE AKR + A+ +N+ Sbjct: 78 LLAPRSPP--PPADALLCTALALAWREQDAPYEVFTLVNQTVEAAKRSPATQPQARFINA 135 Query: 127 ILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LRR RE+ L+Q + P W+ +RL+ + ++ +I A + L + Sbjct: 136 CLRRFLRERDTLVQLTDQNPVALWNHPLWWIKRLQKDWP-DQWQSILAANNRHAPMTLRM 194 Query: 183 KFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L E + + +LPGFAEG++ VQDA+A + Sbjct: 195 NLRRSAVLPYLQLLKDAGLNASAAGSSGVTLEQAKPVQALPGFAEGLFSVQDAAAQLAAP 254 Query: 236 LFG----TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA 290 L + +LD CAAPGGKTA L+ ALDV R E++ L RL L A Sbjct: 255 LLLSGLAAAGSPQILDACAAPGGKTAHLLEITEGKVTALDVDPARCERIHQTLQRLGLEA 314 Query: 291 --EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + +LFDA+L+DAPC+++G +RRHPDV W R DI + Q +LL Sbjct: 315 RVLVADAANVSAWWDGQLFDAILLDAPCTASGIVRRHPDVRWLRRESDIAQLVATQARLL 374 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG +++ CS+ + + +Q L L+P + Sbjct: 375 KALWQVLKPGGRLLYCTCSVFRAEGGNQIQTFLA-HNTEASLLPSPGHLLPVNRVTGDAV 433 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P+ DGF+ L + Sbjct: 434 PDN--------------PIGDHDGFYYALLEKRA 453 >gi|113869632|ref|YP_728121.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16] gi|113528408|emb|CAJ94753.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16] Length = 466 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 108/467 (23%), Positives = 182/467 (38%), Gaps = 42/467 (8%) Query: 10 VSSHLLSCV-----MRKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63 ++ +L + + +L ++ + + ++ I T+R Sbjct: 8 LAFQMLGAAAAVRAVSEGTALPQAIEDAAAQLRLDRVQDAATRGALQDIAYRTMRQFGTA 67 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVAD---------------YAVVDLAV 108 A++ ++ + SL + + + + + VVD AV Sbjct: 68 RALVTKLVTRPPGAQVDSLLAVALALLLE--HAPGPRDKQDGADAGRPGYSTFTVVDQAV 125 Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKER 164 A + + H LVN++LRR RE+ E+ + +P W+ L Y + Sbjct: 126 SAAASEPKTAHARGLVNAVLRRFLRERKALLAEVNRDEQARWNLPPWWLRMLREAYPDQW 185 Query: 165 VLAISDACISPLYI------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218 + + A + P ++V+ A+ A + + LPGF Sbjct: 186 MALAASANVRPPMTVRVNTARVSVQQYQTDLANAGLAGHVVGPQAVRLVRAVPVTQLPGF 245 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLE 277 AEGV VQDA A + L + + VLD CAAPGGKT L+ + +VTA++ +R Sbjct: 246 AEGVVSVQDAGAQLAAPLLEVADGMRVLDACAAPGGKTGHLLELADIEVTAVESDPQRTT 305 Query: 278 KLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 ++ NL RL A + D+ + FD +L D PCS++G +RRHPD+ W R Sbjct: 306 RIAENLARLGKQARIVVGDASRPADWWDGQPFDRILADVPCSASGIVRRHPDIRWLRRET 365 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI K QR+++ Q +KPGGI+V+ CS+ + EE + + L Sbjct: 366 DIAKLVTEQRRIVSQLWPLLKPGGILVYVTCSIFPTEGEEQARWFGAQLADAIRLQA-PG 424 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A G + S DGFF ++ Sbjct: 425 QLLPGTHATQAAGANGEK-----DATAGTSLPSDHDGFFYARFQKRA 466 >gi|94312493|ref|YP_585703.1| sun protein [Cupriavidus metallidurans CH34] gi|93356345|gb|ABF10434.1| tRNA and rRNA cytosine-C5-methylase (sun protein) [Cupriavidus metallidurans CH34] Length = 457 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 188/461 (40%), Gaps = 39/461 (8%) Query: 10 VSSHLLSCV-----MRKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRI 63 ++ +L + + +L ++ + + ++ + T+R Sbjct: 8 LAFQMLGAAAAVRGVHEGTALPQAIEDATNLLRLDRVRDAATRGAIQDLAYRTVRQFGAT 67 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVA--------DYAVVDLAVEQAKRDK 115 A++ ++ SL + + + D + D+ VVD AV A + Sbjct: 68 RALVTQLVTRPPGALVDSLLAVALALLLEGEEGDRSKVGRGGYSDFTVVDQAVSAAASEP 127 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDA 171 + H LVN++LRR RE+ L+ IA +P W+ E+L Y +R +A++++ Sbjct: 128 KTAHARGLVNAVLRRFLRERKALMDAIAKDEEARWNLPTWWLEQLRAAYP-DRWMALAES 186 Query: 172 CISPLYIDLTVKFDI---ETWAHKLNAVML----PTGGIRLKELPESIVSLPGFAEGVWW 224 + L V + + +L + + +PGFA G Sbjct: 187 VNVRPPMTLRVNTKRLSVDEYLKELANAGMAGTAIGPQAVRLVRAFPVSQVPGFATGDVS 246 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNL 283 VQDA A + L + + VLD CAAPGGKT L+ + VTA++ R ++ NL Sbjct: 247 VQDAGAQLAAPLCEVADGMRVLDACAAPGGKTGHLLELADIHVTAVESDAERAARIHENL 306 Query: 284 DRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL AE I D+ + FD +L D PCS++G +RRHPD+ W R DI K Sbjct: 307 ARLDQRAEVIVGDASRPKDWWDGQQFDRILADVPCSASGIVRRHPDIRWLRRESDIAKLV 366 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 QR+++ Q S +KPGGI+V+ CS+ + EE P + L + Sbjct: 367 NEQRRIVSQLWSLLKPGGILVYVTCSIFPTEGEEQALWFGAQLPDAIRLQAPGQLLPGTK 426 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A + + + S DGF+ ++ Sbjct: 427 AQETAGTN----------MAGQPSLPSDHDGFYYARFQKRA 457 >gi|83719791|ref|YP_440691.1| sun protein [Burkholderia thailandensis E264] gi|83653616|gb|ABC37679.1| sun protein [Burkholderia thailandensis E264] Length = 571 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 103/448 (22%), Positives = 175/448 (39%), Gaps = 34/448 (7%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ + V R L + A + + ++ I +R D ++ + Sbjct: 139 AAQAVDAVTRGAALPAALAAVHATLPANARAAS--RGAIQDIAYRAMRRRGTADWLIAQL 196 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLD----VADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + P + LL + A ++ D A + VVD AV +E LVN+ Sbjct: 197 VAKAPP---AHVHALLVCAFALLVDDDEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNA 253 Query: 127 ILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT 181 +LRR RE+ W+ + +E + ++ + + Sbjct: 254 VLRRFLRERAVWLERLQSDRRARWNYEPWWIDAVERAWPDAWPRILASGDAPGPLTLRVN 313 Query: 182 VKFDIETW------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + A +++A + IRL + +PGFA+G+ VQDA A + + Sbjct: 314 ARRMTADAYLDVLRAERIDAEKVGRHAIRLASAL-PVERIPGFADGIVSVQDAGAQLAAE 372 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDI- 293 G + + VLD CAAPGGKT ++ +V AL+ R ++ NL RL L A+ Sbjct: 373 WLGARDGMRVLDACAAPGGKTGHILELAHAEVVALESDPARAPRIGENLARLSLAADVRV 432 Query: 294 -IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FD VL D PCS++G +RRHPD+ W R DI QR++L Sbjct: 433 GDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPDIRWLRRAADIPALVAEQRRILSALW 492 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 VKPGG ++++ CS+ ++ E + + V L + + Sbjct: 493 PLVKPGGELLYATCSIFPEEGELQARWFGDACQDAVRLDAPGQLLPQGATGGAPAA---- 548 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 G DGFF ++ Sbjct: 549 ------GGSDEPGRHVDHDGFFYARFQK 570 >gi|315023501|gb|EFT36507.1| ribosomal RNA small subunit methyltransferase B [Riemerella anatipestifer RA-YM] Length = 402 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 80/444 (18%), Positives = 164/444 (36%), Gaps = 70/444 (15%) Query: 12 SHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L K +++ + +D+ +V I +R+ R++ + Sbjct: 13 HDALRETFFEKNKYADKVIERLLKANKKWG--SQDRAVVSEIFYNIIRWKKRLEYYMGEG 70 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + + R+ +A +L+ + K+ F + + + Sbjct: 71 VKPN---------NIYRLVLAYLLWSETH--------------YKKFEEFDGIKIADI-- 105 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIET 188 +++ K + A IPEW E LE G+ ++ + T+K + Sbjct: 106 ITKLKKNTVPTKAIEHSIPEWLAETLEKELGEAWEKEMTALTQQAATVLRANTLKTTPKE 165 Query: 189 WAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 LN + ++ +++ F +G++ VQDA + Sbjct: 166 LVADLNDEGVECHSLKNYPEAIELKEKKNVFLTSAFKDGLFEVQDAGSQKIAHFLEVKEG 225 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMD 297 + V+D CA GGKT + + + ++ ALD+ + +L +L+ R + + E + Sbjct: 226 MRVVDACAGAGGKTLHIAALMKNKGQIIALDIFEWKLAELKRRAKRAGAHNIETRFIEDN 285 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + D +L+D PCS G ++R+PD W D D I + Q+++L +K Sbjct: 286 KVIKRLHEKADRLLLDVPCSGLGVLKRNPDSKWKIDADFIERIKTEQQQILQDYSKILKK 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ +++ V L ++P + + + P Sbjct: 346 GGKMVYATCSILPSENQNQVNTFLATNPNFRLIKDQS--------------------LLP 385 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 S G DGF+ + RL Sbjct: 386 ---------SEGYDGFYMALIERL 400 >gi|281356162|ref|ZP_06242655.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548] gi|281317531|gb|EFB01552.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548] Length = 409 Score = 166 bits (419), Expect = 8e-39, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 173/439 (39%), Gaps = 50/439 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L+ V +L LD + + ++ + R ++ + Sbjct: 13 EEAVAGLAAVEAGEANLDDFLDFRLQYPEL-------RRSISNLLFLCFRRKRFLEGWIG 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + ++++LL +AQI + +A + V++AV K + + AK VN++ Sbjct: 66 RLAARPPR---PAVRRLLTAVLAQITFQTGIAPESAVNIAVGLVKHSGKLQE-AKFVNAV 121 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 LRR + + + A ++P +R Y + + ++ A ++ + E Sbjct: 122 LRRALEQPQPVPE--APELVLPPVLFKRWRKRYSEAELAQLAAALLAQPEFTFRAERGFE 179 Query: 188 TWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 AV + ++ +G ++QD + S+ L SVL Sbjct: 180 PGELAAEAVPAFGEFRFFRACSAARLLESAALRDGRIYIQDPATSLAPSLPDFNGVKSVL 239 Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 DLCAAPGGK+ L ++ A D S+RR + N R L + D + Sbjct: 240 DLCAAPGGKSLMLGERLAGEGRLVAADRSERRQRQTAENFRRRGLD-YQVTVADPAELTG 298 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD VLVD PCS+TG RR PDVLW +++ K QR++L + PGG +V+ Sbjct: 299 E--FDVVLVDVPCSNTGVYRRRPDVLWRFRPEELEKITALQRRILGEAARLTAPGGQLVY 356 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS++ +++ V+ L+ P L ++ P Sbjct: 357 STCSIEPEENPLQVEAFLKEHPGFERLCE--------------------RQLLPSAE--- 393 Query: 424 DGVSSGMDGFFAVALRRLI 442 MDG +A LRR Sbjct: 394 ------MDGAYACLLRRRA 406 >gi|269215462|ref|ZP_06159316.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia exigua ATCC 700122] gi|269130949|gb|EEZ62024.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia exigua ATCC 700122] Length = 502 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 81/464 (17%), Positives = 153/464 (32%), Gaps = 60/464 (12%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R+ + + V + ++ + + +D + +D + Sbjct: 68 RVAAYAIGRAVRERGAYVSSVAPTVTA--RIEDIDPKDVAFATRLSKGVAATWGTLDEFI 125 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK------RDKENRHFA 121 D + S + ++ LRVS ++++L + VVD VE + + N Sbjct: 126 DRTMSSP-DDIQADVRDALRVSAYELVFLHKPPHVVVDQGVELVRFVEPKAANLANAVLH 184 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 ++V + + +A P W RL + G+ A + + + Sbjct: 185 RMVEAADDFPFGDPETDDAALARSCAFPGWISRRLIDELGRADAAEFMRASMGDAPVFVA 244 Query: 182 VKFDIETWAHKLNA---VMLPTGGIRLKELPESIVSLPGFAEGVW---------WVQDAS 229 V F + + A V I + F V D S Sbjct: 245 VNFVRAKVSEIIQAFKEVGTEVEPIAGVPGCLRVHGAKAFKTPRIKRLFDEGKMLVSDQS 304 Query: 230 ASIPVQLFGTLNNL-SVLDLCAAPGGKT-------AQLIVSGAKVTALDVSKRRLEKLRC 281 A L++ + KT + + + ++D + E LR Sbjct: 305 AQAVALFALPKERPARFLEIGSGRATKTVLMQSAAYRRYGAFMDMVSVDDHAFKAEILRE 364 Query: 282 NLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 ++ + + D FDAV VDAPCS GT+RRHP++ W D+ Sbjct: 365 RMESYGIEGVEARVADGRMLSKSFDAGSFDAVFVDAPCSGIGTLRRHPEIKWRLTASDVS 424 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAY 397 A +L++ V+ GG++ +S C+ K+++E+VV + L+ + + Sbjct: 425 TLAMTGFDMLIEAAGLVRVGGMLTYSTCTAFKEENEQVVDRFLKMKTGESFVVES----- 479 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + V G D +AV LRR+ Sbjct: 480 ----------------------TMAVKLVEGGPDAHYAVRLRRV 501 >gi|257091709|ref|YP_003165350.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044233|gb|ACV33421.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 442 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 117/434 (26%), Positives = 173/434 (39%), Gaps = 55/434 (12%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 SLT L + + +D TLR + +L +L L + Sbjct: 47 GQSLTQALRPLSAAAPAARAAAQDVA------YGTLRRYGCGEFILARLLTKPLSHTETE 100 Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141 ++ ++ A Y VVD AV A F LVN +LR R++ L Sbjct: 101 ALL--LAALFRLHTRPEAAYMVVDQAVAAAGEMTGG-VFKGLVNGLLRSYLRQRESLAAA 157 Query: 142 IAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET-------WA 190 +AG + P W+ RL Y + I A P + L V T Sbjct: 158 MAGDDEAVQQHPAWWLARLRRAYPEHWQE-IVAAGNGPPPMTLRVNRRRATSEAYAARLL 216 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 ++ L P ++ +LPGFA+G+ +QDA A QL + +LD CA Sbjct: 217 EAGSSARQVAANALLLAKPVTVDALPGFADGLVSIQDAGAQRAAQLLLPVAGERILDACA 276 Query: 251 APGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---DYCPKKL 306 APGGK A L + + ALD+ R ++ NL RL L A + D D+ Sbjct: 277 APGGKAAHLLEAADIDLLALDIDATRTRRIEDNLRRLGLVA-KVGVADCRASGDWWDGLP 335 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FDA+L D PCS++G +RRHPD+ + R DI + A Q LL Q +KPGG ++++ C Sbjct: 336 FDAILADVPCSASGVVRRHPDIKYLRRESDIRRFALLQADLLDQLWPLLKPGGRLLYATC 395 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ +++E + L P LV R+ P Sbjct: 396 SVFPEENEGQIDAFLVRQPTARRLVEE--------------------RLLP--------- 426 Query: 427 SSGMDGFFAVALRR 440 DGF+ LR+ Sbjct: 427 REEHDGFYYALLRK 440 >gi|91217896|ref|ZP_01254850.1| putative sun protein [Psychroflexus torquis ATCC 700755] gi|91183989|gb|EAS70378.1| putative sun protein [Psychroflexus torquis ATCC 700755] Length = 404 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 158/453 (34%), Gaps = 67/453 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N L + + + RD+ + +R+ Sbjct: 1 MRLHRNLVFAVVDTLHLIFNEDKYADKEISNTLKRDKRWG--ARDRGFIAETTYDIVRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + D + R L R+ V + E + Sbjct: 59 RLYSEIAD--VNPPFSRP-----NLFRL-----------------FTVWATLKGIEIPDW 94 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI-- 178 + ++ RR+ EL + IP+W E GK I I Sbjct: 95 KQFEDTPTRRIKGRFDELSKITKYAESIPDWMDELGRKELGKLWESEIHALNEQAKVILR 154 Query: 179 --DLTVKFDIETWA--HKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASI 232 L + + L G EL E + F +G + VQDAS+ Sbjct: 155 TNTLKITPTKLQLILDEEFIPTKLIKGYPEALELYERADVFKTEAFKKGFFEVQDASSQK 214 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 L V+D CA GGKT + + + +V A+D+ +L++L+ R + Sbjct: 215 VAHALKLEPGLRVIDACAGAGGKTLHIAALMENKGQVIAMDIYGNKLKELKRRAKRAGAH 274 Query: 290 AEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + E+D+ K D VL+DAPC+ G +RR+PD W + + + Q+ L Sbjct: 275 NLETREIDSTKVIKKLHDSADRVLIDAPCTGLGVLRRNPDAKWKLTPEFLKEIKEKQQNL 334 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 LL VKPGG++V++ CS+ +++ +Q L Sbjct: 335 LLDYSKMVKPGGLLVYATCSILPTENQVQIQDFLN------------------------- 369 Query: 408 SPEG-WIRITPDMLEKIDGVSSGMDGFFAVALR 439 SPEG + ++ D EKI SG DGF+ L+ Sbjct: 370 SPEGEFFQL--DTDEKILAHKSGYDGFYYAVLK 400 >gi|49474994|ref|YP_033035.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1] gi|49237799|emb|CAF26993.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1] Length = 428 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 90/449 (20%), Positives = 158/449 (35%), Gaps = 45/449 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + L F S D+ + IV LR + ++ Sbjct: 8 QAAIDVLKEIEIRHRPIGEALKDWGVCHRFAGAS--DRAAIGTIVYDVLRRRYSLQWRME 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + S+ L LD + + E + +R +L+ Sbjct: 66 S------DDIRDSVFGTL---------LDTNKMTIEQIDGEL----EGDRFAPQLLGMRQ 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 R+ + + + IP+W + L + V+ A + +DL V T Sbjct: 107 RQSWQRRQLVDAPDYIRGDIPQWCQAHLRPLFADNWVIEA-AALATRPSLDLRVNSLKAT 165 Query: 189 WAHKLNAVMLPTGGIRLKEL-------------PESIVSLPGFAEGVWWVQDASASIPVQ 235 + ++ P F +G + +QD + I Sbjct: 166 PEKVFQELAKNKVQSFSWFRQALRIAPIEKFGRHPNVQVKPAFQKGHFEIQDLGSQIVAH 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L + VLD CA GGKT A + + ++ A D K RL + L R + Sbjct: 226 LVEAKERMQVLDYCAGAGGKTLALAASMKNQGQIYAYDSDKARLAPIFDRLRRAGVRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D VL+DAPCS TGT RRHPD W + + + QR +L + I Sbjct: 286 PRAQREELQSLVGRMDRVLLDAPCSGTGTWRRHPDTKWRLTLEQVRQRQREQRAILNETI 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 ++K G +V+ CSL ++EE + + L+ + A WK + ++ P Sbjct: 346 DYLKLNGRLVYITCSLFVDENEEQISRFLQQHCNFYAID--MRALWKQHFSSSSVQP--- 400 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + ++ DGFF L++ Sbjct: 401 --VFSNYGLTLSPATTKTDGFFLSVLQKK 427 >gi|297690947|ref|XP_002822860.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like isoform 1 [Pongo abelii] gi|297690949|ref|XP_002822861.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like isoform 2 [Pongo abelii] Length = 814 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 277 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 336 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 337 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVMALAPQEHERILDMCCA 396 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 397 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 456 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 457 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 516 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 517 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 569 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 570 RFYPHTHNMDGFFIAKFKK 588 >gi|302382747|ref|YP_003818570.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302193375|gb|ADL00947.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 471 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 92/483 (19%), Positives = 161/483 (33%), Gaps = 78/483 (16%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 ++ + + +L ++ + +D+ + V LR R+ + Sbjct: 13 IIDRISAGKAPAEAVLKTWGTENRYAG--SKDRRAIADQVYKVLRARGRLVWAMGGREDG 70 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L+ +++ I L V + + A + +K R Sbjct: 71 ---------RALVIGALSLIDGLSVEEIEALH-----AGDGYGPKPLSKQ-----ERSRI 111 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK- 192 + +PE+ E N +G + + IDL V T A Sbjct: 112 SMTADEVPGWVAAGLPEFVVEDFRNTFGDRWAEEAAGLMVPRAPIDLRVNGARATVAEVE 171 Query: 193 -------LNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 LN P L+ E + +L F G +QD + I L G Sbjct: 172 AELREAGLNPTRTPWSAWGLRLSAEPPPNVQALEAFKAGRIEIQDEGSQIVCWLAGVEPG 231 Query: 243 LSVLDLCAAPGGKTAQLIVSG--------------------------------------- 263 ++V+D CA GGKT L + G Sbjct: 232 MTVVDYCAGGGGKTLGLAMQGLANGASRVEAAPAEPERIWTPTGWVDAPKSKPKAATIAR 291 Query: 264 --AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319 ++ A DV ++RL+ +R L R + AE I + D V VDAPC+ + Sbjct: 292 AEGRLIACDVVQKRLDNIRPRLARAGVEAELIHLGPNGGGVEDIVGIADVVFVDAPCTGS 351 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT RR P+ W +D+ + Q +L + VKPGG +V+ CS+ + ++E V Sbjct: 352 GTWRRRPEDAWRLKPEDVDRMHALQMAILARAAKLVKPGGRLVYVTCSMLRVENEATVDH 411 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 P + + ++ A + G + ++ ++ DGFF Sbjct: 412 FEEDHPSFAPVPVAEALGSAAMTDAARETLAGLAQ---GHRLRMSPATTDTDGFFVALYE 468 Query: 440 RLI 442 R Sbjct: 469 RRA 471 >gi|311256287|ref|XP_003126580.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Sus scrofa] Length = 821 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P I L A L + Sbjct: 274 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 333 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 334 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 393 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 394 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQFPKVVGGF 453 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 454 DRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSATSKTGGYLVY 513 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 514 CTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 566 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 567 RFYPHTHNMDGFFIAKFKK 585 >gi|71066692|ref|YP_265419.1| hypothetical protein Psyc_2138 [Psychrobacter arcticus 273-4] gi|71039677|gb|AAZ19985.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 524 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 117/524 (22%), Positives = 202/524 (38%), Gaps = 111/524 (21%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R+ L + + SL +LD L D+ A++ TLR ++ + Sbjct: 25 VRVRVIRTLLAI-QNGQSLASVLDPLL-----NSLHDGDKGFAHALLLTTLRQWYALERL 78 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LD + +S+ K+ ++ ++V + Q+LYL VAD+A + VE AK + H L+N+ Sbjct: 79 LDSLADNSIDEKE--VRTTIQVGLTQLLYLQVADHAAIHETVEAAKEIEF-AHATGLINA 135 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 ILR+V++ + ++ +P W +L+ + E+ + P + L V Sbjct: 136 ILRKVAKNPSKFRKKCDKKHSLPNWLAYQLKQDWS-EQYDDLMQGLRQPAPMFLRVNTAV 194 Query: 185 -DIETWAHKLNAVMLPTGGIRLK------------------------ELPESIVSLPGFA 219 +E + L + + L ++ +LP FA Sbjct: 195 TSVEDYQQALVEFEVEADLVELTSGFNLPNSLDAATSKTISTKGFRLHQSTAVNALPQFA 254 Query: 220 EGVWWVQDASASIPVQLFG--------------------TLNNLSVLDLCAAPGGKTAQL 259 +G VQD A + L N + +LD CAAPGGK A Sbjct: 255 QGAASVQDMHAQLAAPLIHSALFNKLSVKNDDADVDTDTNNNEIRILDACAAPGGKLAHW 314 Query: 260 IVS-----------------------GAKVTALDVSKRRLEKLRCNLDRLHLY------- 289 + +TA+D R+E++ NL RL+L Sbjct: 315 LEILSSNEQSPLFHVKQDDESIPAVSKVTLTAIDNEAPRIERIYDNLQRLNLSQHDLQQA 374 Query: 290 ------AEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + + KK FDA+L+D+PC++TG IRRHPD+ R +D+ + Sbjct: 375 EKNIELNIVCADATTWQGAGKKKSKLVFDAILLDSPCTATGVIRRHPDISILRTEEDVEQ 434 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 +A Q +L +K GG +++ CS+ KQ++ E +Q + V + Sbjct: 435 TALLQADILHNLWPQLKVGGYLLYVTCSILKQENVEQMQDFITHYSDAVAIE-------F 487 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 S D ++ + P S DGF+ L + + Sbjct: 488 SEDCNWGIAQAIGRQCLP-------IDSESGDGFYYALLHKTAE 524 >gi|109095238|ref|XP_001105964.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like isoform 3 [Macaca mulatta] Length = 807 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 270 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 329 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 330 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 389 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 390 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 449 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 450 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 509 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 510 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSAR 562 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 563 RFYPHTHNMDGFFIAKFKK 581 >gi|109095240|ref|XP_001105811.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like isoform 1 [Macaca mulatta] Length = 844 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 307 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 366 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 367 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 426 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 427 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 486 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 487 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 546 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 547 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSAR 599 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 600 RFYPHTHNMDGFFIAKFKK 618 >gi|109095234|ref|XP_001105884.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like isoform 2 [Macaca mulatta] gi|109095236|ref|XP_001106035.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like isoform 4 [Macaca mulatta] Length = 811 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 274 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 333 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 334 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 393 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 394 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 453 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 454 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 513 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 514 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSAR 566 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 567 RFYPHTHNMDGFFIAKFKK 585 >gi|315223466|ref|ZP_07865323.1| RsmB/NOP family methyltransferase [Capnocytophaga ochracea F0287] gi|314946639|gb|EFS98630.1| RsmB/NOP family methyltransferase [Capnocytophaga ochracea F0287] Length = 412 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 83/453 (18%), Positives = 160/453 (35%), Gaps = 67/453 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L+ + + +++ + RD+ + + +R+ Sbjct: 10 MKLHRNLVDAVIEGLTFIFNEGQYADKVVEKQLKKDKRWG--ARDRAFIAETIYDIVRWK 67 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + + +++ L R+ +V K Sbjct: 68 RLYAEIAEVY-------EPFTVHNLRRMFAVW-----------------ATLKSIALPDW 103 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ RR+ + EL + +P+W G+ A S + Sbjct: 104 GNYFEDTPARRIKGKFDELSKVRKLRESVPDWLDTLGAQELGETLWTDELHALNSLAPVV 163 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230 L V +E L + T +R +I FA+G++ VQDAS+ Sbjct: 164 LRVNTLKTSLEHLQQFLRQEGVETYPLRDYPDALQLVERSNIFKTQAFADGLFEVQDASS 223 Query: 231 SIPVQLFG-TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 V+D CA GGKT L + + ++ A+D+ +++L++L+ R Sbjct: 224 QKVAPFMQIDDKVKRVIDTCAGAGGKTLHLATLMQNKGQIIAMDIYEQKLQELKRRARRN 283 Query: 287 HLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ + ++ FD VL+DAPCS G +RR+PD W + + + Q+ Sbjct: 284 GVFNIETKLIEPKQLKRMHGTFDRVLIDAPCSGLGVLRRNPDAKWKLQPEFLDEIRTTQQ 343 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L Q +K GG +V++ CS+ ++++ ++K L S + Sbjct: 344 EILQQYSKLLKKGGKLVYATCSILPSENQQQIEKFLASEAGKEYRLEAEEV--------- 394 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 I SG DGF+ L Sbjct: 395 -----------------IFAHQSGYDGFYMARL 410 >gi|163852351|ref|YP_001640394.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens PA1] gi|163663956|gb|ABY31323.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1] Length = 459 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 88/458 (19%), Positives = 151/458 (32%), Gaps = 57/458 (12%) Query: 7 ARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 ARL + +L + +R L + D+ + ++V LR Sbjct: 35 ARLSAAIEILDDIADRRRPAADALKDWGLAHRYAG--SGDRAAIASLVYDGLRRRASAAW 92 Query: 66 VLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 V+ + +LR+ +A+ A R Sbjct: 93 VMGAETGR------AIVIGMLRLQRGLAE---------------PSIASLFDGARFAPPP 131 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + R+ E P + L + +L A +D+ V Sbjct: 132 LTEDERKRLAEGSLADAPPEVAGDAPAFVLPSLT-ALLGDALLPELRALGRRAPLDIRVN 190 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------------SIVSLPGFAEGVWWVQDASAS 231 ++ A+ + ++ P F EG + +QD + Sbjct: 191 TLKQSREEAFVALADLSPDTTPLSALGLRIPLGEDGRGPALHVDPLFLEGGFEIQDEGSQ 250 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 I L G +V+DLCA GGK A + + A + A D RRL + L R Sbjct: 251 IASLLAGAKPGETVVDLCAGGGGKSLALAAITGNAAHIIATDADPRRLAPIHERLRRSGA 310 Query: 289 YAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 E D VLVDAPC+ TGT RR+PD W + Sbjct: 311 QVEVRTPRTGKARADVLADLDGTVDRVLVDAPCTGTGTWRRNPDAKWRLRPGSLAGRLAE 370 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + ++PGG +V+ CSL ++++ V +L+ + V + A +D Sbjct: 371 QAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQR-SGAIRPVATDLAPVPGLDE 429 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G ++ +G DGF+ + R Sbjct: 430 NVRKTARG---------IQMSPALTGTDGFYVATMTRK 458 >gi|301773766|ref|XP_002922311.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Ailuropoda melanoleuca] Length = 820 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 R S L + +A ++ +L + + ++ +A P I L Sbjct: 257 GTQREEGRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLR 316 Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230 A L + + I + P + G + +Q AS+ Sbjct: 317 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASS 376 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +PV + +LD+C APGGKT+ + + + + A D + RL+ + NL RL Sbjct: 377 MLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLG 436 Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + I D + FD VL+DAPCS TG I + P V +D DI++ A Q++ Sbjct: 437 VTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKE 496 Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 LLL I V K GG +V+ CS+ +++E VV L+ V LVP + + Sbjct: 497 LLLSAIDSVNAMSKTGGYLVYCTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ--- 551 Query: 403 MAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440 + R P + + + MDGFF ++ Sbjct: 552 --EGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 589 >gi|329850813|ref|ZP_08265658.1| NOL1/NOP2/sun family protein [Asticcacaulis biprosthecum C19] gi|328841128|gb|EGF90699.1| NOL1/NOP2/sun family protein [Asticcacaulis biprosthecum C19] Length = 441 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 93/463 (20%), Positives = 166/463 (35%), Gaps = 55/463 (11%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR ++ +L + R + +L ++ + +D+ + V R Sbjct: 1 MTP--AARLQAAADILDQLSGTRATAEAVLKQWGQNNRYAG--SKDRRAIADRVYRCTRA 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 R+ + S+ + L L + D A +D Sbjct: 57 RSRLLWAMQKTEKSTGQGRALVLASLALI-----------DGAPLDEIETL----FSGAG 101 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + + + + +PE+ R + +G + +D ID Sbjct: 102 YGPKPLTDEEKSQISAADGDAPLWVKTGLPEFVVGRFQQQFGDDWAAEATDLMTPRAPID 161 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIRLKEL--------PESIVSLPGFAEGVWWVQDA 228 L V + L L P ++V L + +G+ +QD Sbjct: 162 LRVNGARTARDEMLKVLGEEGLSPQPTPFSRFGIRLPSEPPPNLVKLSAYQQGLIEIQDE 221 Query: 229 SASIPVQLFGT---LNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCN 282 + + L G V+D CA GGKT AQ++ ++ A DV ++RL + Sbjct: 222 GSQLAAFLAGAGLLPGASKVVDFCAGGGGKTLALAQMMDGKGEIYACDVVEKRLRAIEPR 281 Query: 283 LDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 L R A + D D + D VLVDAPCS +GT RRHP+ + ++ + Sbjct: 282 LQRAGASAHFVHFFDPEDETQLELLRGADLVLVDAPCSGSGTWRRHPEEAHRLNEAEVER 341 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN----- 394 Q +L + S VKPGG +V+ CS+ ++ +P + +P++ Sbjct: 342 LHGLQTHILSRAASCVKPGGRLVYVTCSVLDDENAATADVFEAQNP-AFDALPIHSLARM 400 Query: 395 -SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 S + + LS +R+TP ++ DGFF Sbjct: 401 ASLFVDNTARLTELSAGHRLRLTPH--------TTSTDGFFIA 435 >gi|332249237|ref|XP_003273770.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 3 [Nomascus leucogenys] Length = 629 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 272 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 331 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 332 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 391 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 392 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 451 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 452 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 511 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 512 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 564 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 565 RFYPHTHNMDGFFIAKFKK 583 >gi|332249233|ref|XP_003273768.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1 [Nomascus leucogenys] gi|332249235|ref|XP_003273769.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2 [Nomascus leucogenys] Length = 809 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 272 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 331 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 332 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 391 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 392 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 451 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 452 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 511 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 512 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 564 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 565 RFYPHTHNMDGFFIAKFKK 583 >gi|171911400|ref|ZP_02926870.1| putative sun protein [Verrucomicrobium spinosum DSM 4136] Length = 408 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 84/455 (18%), Positives = 154/455 (33%), Gaps = 62/455 (13%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + L+ + + + ++ RD+ +R+ Sbjct: 1 MKLHRHLIEQIIATLAEIFARGVHADKAIERMMKAYPKWG--ARDRRFFAETSYELVRWW 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 L + S + ++L Sbjct: 59 RWY-WYLAGLPDSEYNKV-------------ELLNDGKVWRV----WAAYWMVQHGEAPP 100 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + + + A IP+W +ER +G+E + A P + L Sbjct: 101 FAECRGSWNATVKSRYDADVLPAIRLSIPDWLQERGSKEFGREWPE-LMKALNEPADVFL 159 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 +L + + ++ + +++ + F +G++ VQDA++ Sbjct: 160 RANTLRITPVELQARLEGEGVESHRVKGLPDALRLSVRKNVFTTQAFKDGLFEVQDAASQ 219 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 V+D CA GGKT L + + + A+DV + +L+++R R + Sbjct: 220 KIAPFLEVAPGQRVVDACAGAGGKTLHLAALMQNKGSLVAMDVHQWKLDEMRRRARRNGV 279 Query: 289 YAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 +IE D VL+D PCS G IRR+PD W +++ + Q++ Sbjct: 280 SNVEPRLIEDSKSIKRLADKADRVLLDVPCSGLGVIRRNPDAKWKLSEEELDRLEKLQQE 339 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L+ VKPGG +V++ CSL +++ VQ L S +L Sbjct: 340 ILVSHSRMVKPGGKLVYATCSLFPSENDRQVQTFLASHGDEWKL---------------- 383 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + + PD G DGF+A L R Sbjct: 384 ---EEELSLRPD--------REGYDGFYAARLVRK 407 >gi|319778867|ref|YP_004129780.1| Ribosomal RNA small subunit methyltransferase B [Taylorella equigenitalis MCE9] gi|317108891|gb|ADU91637.1| Ribosomal RNA small subunit methyltransferase B [Taylorella equigenitalis MCE9] Length = 425 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 114/444 (25%), Positives = 187/444 (42%), Gaps = 58/444 (13%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 S + D+ G S LL + D + V AI LR + ++ + +L S P Sbjct: 13 SSSKLVRDVMGGQSTSDLLPKVDITIRAGVHAISFHALRHYGKALSIANKLLTKSPP--N 70 Query: 80 YSLQQLLRVSVAQI------LYLDVADYA---VVDLAVEQAKRDKENRHFAKLVNSILRR 130 LL VS++ + L+ + Y V+D +V + + F L+N+ LR Sbjct: 71 SLFLNLLCVSLSLLIVDDSELFDEQPVYKEFVVLDESVNACSKMPKTASFKGLLNACLRN 130 Query: 131 VSREKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 R K EL++ + P+W+ E+L+N Y + + +A I+L + Sbjct: 131 FLRNKTELIRGLNIYENLSYPQWWYEKLKNSYPNTYLEVL-NADKKYAPINLRINTRKIS 189 Query: 186 IETWAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + L+ + I +I +LPG+ EG++ VQD A N Sbjct: 190 RADYLKLLSTQNIEFEEIGESGIKLSKSVNIATLPGYDEGLFSVQDIGAQNAAFQLPIKN 249 Query: 242 NLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDA 298 VLD C+APGGK A L + +D K RLE+++ NL+RL L ++E DA Sbjct: 250 GDYVLDACSAPGGKAAHLLERFDIDLLCMDADKERLERVKENLNRLDLLGQNVHLLEGDA 309 Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D+ + FDA+L D PC+ +G +RRHPD+ W R D++K+ QRK+++ +K Sbjct: 310 SLKDWWDGRKFDAILADVPCTGSGVVRRHPDIKWLRKEVDVIKTVELQRKIIINLWDMLK 369 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +++ CS+ K++ E Q + I Sbjct: 370 FGGYLLYVTCSVFKEEGELQAQYF--------------------------TTKLEGIERL 403 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFF ++ Sbjct: 404 PSLGHIFPPKQ---DGFFYALFKK 424 >gi|73997745|ref|XP_854432.1| PREDICTED: similar to Proliferating-cell nucleolar antigen p120 (Proliferation-associated nucleolar protein p120) [Canis familiaris] Length = 985 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 83/340 (24%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 R S L + +A ++ +L + + ++ +A P I L Sbjct: 425 GTQREEGRSRSEYLHRLQKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLR 484 Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230 A L + + I + P + G + +Q AS+ Sbjct: 485 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGYYMLQGASS 544 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +PV + +LD+C APGGKT+ + + + + A D + RL+ + NL RL Sbjct: 545 MLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLG 604 Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + I D + FD VL+DAPCS TG I + P V +D DI++ A Q++ Sbjct: 605 VTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKE 664 Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 LLL I V K GG +V+ CS+ +++E VV L+ V LVP + + Sbjct: 665 LLLSAIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ--- 719 Query: 403 MAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440 + R P + + + MDGFF ++ Sbjct: 720 --EGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 757 >gi|296487127|gb|DAA29240.1| nucleolar protein 1, 120kDa [Bos taurus] Length = 820 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P I L A L + Sbjct: 276 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 335 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 336 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 395 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 396 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQFPKVVGGF 455 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 456 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 515 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 516 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 568 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 569 RFYPHTHNMDGFFIAKFKK 587 >gi|156121159|ref|NP_001095727.1| nucleolar protein 1, 120kDa [Bos taurus] gi|151554602|gb|AAI49979.1| NOP2 protein [Bos taurus] gi|154425735|gb|AAI51442.1| NOP2 protein [Bos taurus] Length = 820 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P I L A L + Sbjct: 276 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 335 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 336 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 395 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 396 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNAIISHYDGRQFPKVVGGF 455 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 456 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 515 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 516 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPTLRSTR 568 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 569 RFYPHTHNMDGFFIAKFKK 587 >gi|304321740|ref|YP_003855383.1| sun family protein [Parvularcula bermudensis HTCC2503] gi|303300642|gb|ADM10241.1| sun family protein [Parvularcula bermudensis HTCC2503] Length = 429 Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 154/453 (33%), Gaps = 54/453 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ +R+ + L + + +D+ + +V+ LR+ ++ Sbjct: 8 AAALDVLAQFEARRVPIKVCLADWARGARYAG--AKDRAFIGGVVHDALRYRRSLE---- 61 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + L L + +V A+ + + Sbjct: 62 -LDTRPRIGIGRVLMTL----------WGWPEARLV---EAFAETPHGPGALSAEEIDAI 107 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIE 187 + PE+ LE ++ +P+ + + ++ D+ Sbjct: 108 AEGATLAAR-----DVRRDWPEFALPLLERVNDNPTAEIEANRARAPVDLRVNTLRSDLP 162 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVS----------LPGFAEGVWWVQDASASIPVQLF 237 L + L ++ + P F +G +QD + + Sbjct: 163 RTEKALRGEGAVPAPLAALALRCAVPAAERRGPAIEITPAFQKGWVEIQDEGSQLAALAM 222 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G L +LD CA GGK A + + +V A D+ RRL L R + ++ Sbjct: 223 GDLAGGQILDFCAGAGGKTLAMAAHLDNRGQVFAYDIDARRLAPLYDRARRAGVRNVQVL 282 Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + D V VDAPCS GT RR PD W D + Q ++L Q Sbjct: 283 SPTSDAARLGDLTGKMDGVFVDAPCSGAGTWRRRPDTKWRLTPDQLATRQEEQDRVLDQA 342 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-- 409 +FV+PGGI+V+ CS+ +++E+ + L P P + A A+ P Sbjct: 343 EAFVRPGGILVYVTCSIFAEENEDRIAAFLDRHPTYDIEDPGAAITASGGVHAGAVLPPA 402 Query: 410 --EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +R++P DGF LRR Sbjct: 403 DGRGTLRLSPAKTA--------TDGFAITRLRR 427 >gi|149712409|ref|XP_001496238.1| PREDICTED: nucleolar protein 1, 120kDa [Equus caballus] Length = 810 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 R S L + +A ++ +L + + ++ +A P I L Sbjct: 251 GTQREEGRSRSEYLHRLRKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLR 310 Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230 A L + + I + P + G + +Q AS+ Sbjct: 311 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASS 370 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +PV + VLD+C APGGKT+ + + + + A D + RL+ + NL RL Sbjct: 371 MLPVMALAPQEHERVLDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLG 430 Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + D + FD VL+DAPCS TG I + P V +D D+++ A Q++ Sbjct: 431 VTNTIVSHYDGRQFPKVVGGFDRVLLDAPCSGTGIISKDPAVKTNKDEKDVLRCAHLQKE 490 Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 LLL I V K GG +V+ CS+ +++E VV L+ V LVP + + Sbjct: 491 LLLSAIDSVNATSKTGGYLVYCTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ--- 545 Query: 403 MAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440 + R P + + + MDGFF ++ Sbjct: 546 --EGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKK 583 >gi|254421121|ref|ZP_05034845.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3] gi|196187298|gb|EDX82274.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3] Length = 433 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 95/445 (21%), Positives = 161/445 (36%), Gaps = 40/445 (8%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L + + +L + + +D+ + V LR R+ ++ Sbjct: 13 VLDSIAQGNQPAETVLKAWGTANRYAG--SKDRRAIADHVYKVLRARGRLSWIMGGREDG 70 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L+ S+ I L V + + R + +++ + Sbjct: 71 ---------RALVIGSLHAIDGLSVEEIEALHSGDGYGPRPLSKQERSRITAGQGKLPGW 121 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK- 192 + +PE+ E + +G IDL V T Sbjct: 122 V----------AAGLPEFVVEDFKATFGDRWAEEAHALMAPRAPIDLRVNDAAATVDAVE 171 Query: 193 -------LNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L+ P + L+ E I +L GF G + +QD + + L G Sbjct: 172 VELRNAGLSVARTPWSALGLRVPSEPPPNIQALDGFKAGKFEIQDEGSQVVCWLAGAQPG 231 Query: 243 LSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMD 297 +V+D CA GGKT AQ + K+ A DV +RLE +R L R + A I + Sbjct: 232 ATVVDYCAGGGGKTLGLAQAMGGQGKLIASDVVNKRLENIRPRLQRAGVEAELVLIGQNG 291 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D V VDAPCS +GT RR P+ W +++ K Q ++L Q VKP Sbjct: 292 GGLEAVNGRADLVFVDAPCSGSGTWRRRPEDAWRLTAEEVEKLHALQVRILSQATKLVKP 351 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+ CS+ +++E ++P P+ A S + + + Sbjct: 352 GGRLVYVTCSMLARENEASADAFEAANPDF---HPVAVADVLSAPQLTEAARARFAELAS 408 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 ++ S+ DGFFA +R Sbjct: 409 GARLRLSPASADTDGFFAAVYQRAA 433 >gi|167627567|ref|YP_001678067.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597568|gb|ABZ87566.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 425 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 96/448 (21%), Positives = 186/448 (41%), Gaps = 36/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R V++ + ++ R SL ++ + + LS +D+ V+ + R ++ Sbjct: 1 MNTRAVAAKSILDIIDNRYSL-LTIEHKLIEH---NLSDKDKSFVKLLCYEFFRNYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 V L + K + + L+ + + QI ++ YA ++ V A ++ + KLV Sbjct: 57 NVASLYLA---EKTKLNAKILVMLGILQIFEINQPHYASINETVS-ACKNLKILWAKKLV 112 Query: 125 NSILRRVSRE--KIELLQRIAGISIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLT 181 N +LR++ R+ I + W L+ Y + + ++I L Sbjct: 113 NGVLRQIVRDLEDIRPNYTEHKNHDLAPWLSNMLKEQYPIDYQKIAKAVNSKADMFIRLN 172 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPVQL 236 D + + + LK + + S F +G + +QD SA + Sbjct: 173 EAKDPQYVIDYFDKNNISYSKTELKNCIKLDKAIDVKSNTLFQQGYFSIQDISAQYMGHI 232 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 NN +LD CAAPGGKT ++ AK+TA+D+ +RLE L+ N+ R+ + Sbjct: 233 INVQNNDIILDACAAPGGKTTHILELAPQAKITAIDIIDKRLELLKENITRIAKNNHVNV 292 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 ++ +++DAPCS+ GT++R+PD+ R ++DI Q ++L + Sbjct: 293 TKHDLTQPLAGQYNKIILDAPCSALGTLKRNPDIKVLRKSEDIKSIQTLQAEILDNLWNN 352 Query: 355 VKPG-GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 G +++ CS+ Q+++ ++ L E+V + D Sbjct: 353 NLTNNGYLLYITCSILAQENQLQIKNFLSKH-QDAEIVEIKILENYKTDYG--------Y 403 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 +I P DGF+ ++++ Sbjct: 404 QILP--------TEDKGDGFYYCLIKKI 423 >gi|148667388|gb|EDK99804.1| nucleolar protein 1, isoform CRA_a [Mus musculus] gi|148667389|gb|EDK99805.1| nucleolar protein 1, isoform CRA_a [Mus musculus] gi|148667390|gb|EDK99806.1| nucleolar protein 1, isoform CRA_a [Mus musculus] Length = 792 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 133/326 (40%), Gaps = 32/326 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ +L + ++ +A P I L A L Sbjct: 260 ATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 319 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 320 LDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 379 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 PGGKT+ + + + + A D + RL+ + NL RL + + F FD Sbjct: 380 PGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRLGVTNTIHYDGRQFPKVVGG-FD 438 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364 VL+DAPCS TG I + P V +D DI + A Q++LLL I V K GG +V+ Sbjct: 439 RVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYC 498 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEK 422 CS+ +++E VV L+ V LVP + + + R P + + Sbjct: 499 TCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFQARRFHPTLRSTRR 551 Query: 423 IDGVSSGMDGFFAVALRR----LIQP 444 + MDGFF ++ + QP Sbjct: 552 FYPHTHNMDGFFIAKFKKFSNSIPQP 577 >gi|50729408|ref|XP_416502.1| PREDICTED: similar to NOL1 protein [Gallus gallus] Length = 682 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 131/320 (40%), Gaps = 28/320 (8%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM- 197 +A ++ + L + + ++ +A P + + A L Sbjct: 275 MAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGV 334 Query: 198 -------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 G+ + + I + P + G + +Q AS+ +PV N +LD+C Sbjct: 335 NLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENERILDMCC 394 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KL 306 APGGKT+ + + + + A D + RL + NL RL + + D + Sbjct: 395 APGGKTSYIAQLMKNTGMILANDSNAERLRSVVGNLHRLGVTNAVVSNCDGRQFPKVLGG 454 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVV 362 FD VL+DAPCS TG I + P + +D DI++ A Q++LLL I V GG +V Sbjct: 455 FDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVNATSETGGYIV 514 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--L 420 + CS+ +++E VV L+ + + L+ + R P + Sbjct: 515 YCTCSITVEENEWVVDYALKKRNVRLVATGLDFG-------KEGFTRFKDRRFHPSLKST 567 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + MDGFF L++ Sbjct: 568 RRFYPHTHNMDGFFIAKLKK 587 >gi|163756471|ref|ZP_02163584.1| putative sun protein [Kordia algicida OT-1] gi|161323579|gb|EDP94915.1| putative sun protein [Kordia algicida OT-1] Length = 404 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 87/458 (18%), Positives = 162/458 (35%), Gaps = 74/458 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N L+ + + +++ A RD+ V +R+ Sbjct: 4 MRLHRNLVFSVIDGLNLIFNEGAYADKVVEKLLKRDARWG--SRDRKFVAETTYEIVRWK 61 Query: 61 PRIDAVLD---FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + D +L R +++ LR + ++ Sbjct: 62 RLYAEIADIKENYSRENLWRI-FAVWATLR-GI-EL------------------------ 94 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + +L + RR+ E+ + IP+W E G++ +A Sbjct: 95 PDWNQLAGTPTRRIKGRFDEVSKIRKIKESIPDWLDELGVAELGEDVWTKEINALNKQAD 154 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDA 228 + L E L ++ T I+ +I F G + VQDA Sbjct: 155 VILRANTLRTTKEKLKALLASLEHETEDIKGHPSALRLKERANIFKNEAFKNGFFEVQDA 214 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 ++ + + + V+D CA GGK+ L+ + + +LD+ + +L KL+ R Sbjct: 215 NSQLVSEFLDVKPGMKVVDTCAGAGGKSLHLAALMENKGNLISLDIYEGKLRKLKRRARR 274 Query: 286 LHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + + + K D VL+DAPCS G +RR+PD W + + K Sbjct: 275 NGAHNIETRVITSTKVIKKLYDKADRVLIDAPCSGLGVLRRNPDAKWKIQPEFLDKIKDT 334 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+ +L + VK GG +V++ CS+ +++E V+K L S+ + Sbjct: 335 QQDILQRYSRMVKSGGKMVYATCSILPSENQEQVEKFLASNDDFTLVED----------- 383 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +K+ SG DGF+ L+R Sbjct: 384 -----------------KKLLASESGFDGFYMALLQRK 404 >gi|167579362|ref|ZP_02372236.1| sun protein [Burkholderia thailandensis TXDOH] Length = 470 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 168/413 (40%), Gaps = 32/413 (7%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD----VADY 101 + ++ I +R D ++ ++ + P + LL + A ++ D A + Sbjct: 71 RGAIQDIAYRAMRRRGTADWLIAQLVAKAPP---AHVHALLVCAFALLVDDDEHAAYAPF 127 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLE 157 VVD AV +E LVN++LRR RE+ W+ + +E Sbjct: 128 TVVDQAVTAIGARRECSFAKGLVNAVLRRFLRERTVWLERLQSDRRARWNYEPWWIDAVE 187 Query: 158 NFYGKERVLAISDACISPL-YIDLTVKFDIETW------AHKLNAVMLPTGGIRLKELPE 210 + ++ S + + + A +++A + IRL Sbjct: 188 RAWPDAWPRILASGDASGPLTLRVNARRMTADAYLDVLRAERIDAEKVGRHAIRLASAL- 246 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTAL 269 + +PGFA+G+ VQDA A + + G + + VLD CAAPGGKT ++ +V AL Sbjct: 247 PVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELAHAEVVAL 306 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + R ++ NL RL L A+ D + + FD VL D PCS++G +RRHPD Sbjct: 307 ESDPARAPRIGENLARLSLAADVRVGDAGDPSQWHDGRAFDRVLADVPCSASGIVRRHPD 366 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R DI QR++L VKPGG ++++ CS+ ++ E + + + Sbjct: 367 IRWLRRAADIPALVAEQRRILSALWPLVKPGGELLYATCSIFPEEGELLARWFGDACQDA 426 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L + + G DGFF ++ Sbjct: 427 VRLDAPGQLLPQGATGGAPAA----------GGSDEPGRHVDHDGFFYARFQK 469 >gi|262195483|ref|YP_003266692.1| Fmu (Sun) domain protein [Haliangium ochraceum DSM 14365] gi|262078830|gb|ACY14799.1| Fmu (Sun) domain protein [Haliangium ochraceum DSM 14365] Length = 460 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 99/457 (21%), Positives = 181/457 (39%), Gaps = 40/457 (8%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R ++ L + + ++ V ++ +R + RIDA L Sbjct: 23 RSLALEAWQRTRIDWRFARDGLHGLLR---QQGVGAAERGAVSELIFGMIRNVRRIDAAL 79 Query: 68 DF--VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + V S R + + L + +A+ V+ A+ + Sbjct: 80 EAGGVTAQSAGRVLDAERLLAYLVLAE----------VISPERAAAQTRPQVGAIDWQAV 129 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + + + + + +RIA +P+W E L ER I+ + + L Sbjct: 130 AAIDQRIAAESSVARRIALHDSLPDWLAEALVR-GLGERAEEIAGSLSGRASMTLRANTL 188 Query: 185 --DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQL 236 D E L + R ++ +L + G + VQD + + L Sbjct: 189 VGDREQLRAALAEDGVEVEPTRFARDGLVASGRSNLFALSSYKRGGFEVQDEGSQLIAAL 248 Query: 237 FGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 V+D CA GGKT A + + +V A D R+L++LR + R H + Sbjct: 249 CAPPLRSLVVDYCAGAGGKTLALAAALENRGRVVASDTDARKLQELRRRVKRAHASNVQV 308 Query: 294 IEMDAFDYCP------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + P + VLVDAPCS+ GT+RRHP++ W D+ + Q L Sbjct: 309 LTLPPDGTWPAALAALQGTVQRVLVDAPCSAVGTMRRHPELRWRLSADEAARYPALQFAL 368 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + ++ + PGG ++++ C+L + +++ V++++L P + LVP + + A A Sbjct: 369 CERSLALLAPGGELIYATCTLLRDENQGVIERLLAVHPN-LSLVPASERVSEIWGAAAAA 427 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + + + ++D + G DGFFA L RL QP Sbjct: 428 A----LCVDEGRYLRVDPAAHGTDGFFAAVL-RLSQP 459 >gi|113971032|ref|YP_734825.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-4] gi|113885716|gb|ABI39768.1| Fmu (Sun) domain protein [Shewanella sp. MR-4] Length = 457 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 92/451 (20%), Positives = 155/451 (34%), Gaps = 52/451 (11%) Query: 12 SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 LL ++ + +L + + +D+ ++R + R+ A D Sbjct: 35 IKLLFDEILNTKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKATGDH- 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ +L S L + + A+ + + L S L Sbjct: 92 ------QQAPQFFAMLSASA---LIEAHPWQDIASAWHDLAQSPIDYQQLQSLSVSSLTD 142 Query: 131 VSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + + ++PEWF + R I P T + +T Sbjct: 143 KLALVRQQFPQASFELTDLLPEWFWQVCPIAPEL-RPNLIEAMSSRPPIWGRTQGINSQT 201 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L A+ + I L ++ + + EG +QD ++ + Q+ Sbjct: 202 AVKQLQALEIDASLSLYFEDAINLGTKSMNLNEISLYKEGKIEIQDLASQVIGQICAPEP 261 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTAL-----------DVSKRRLEKLRCNLDRLHLYA 290 D C+ GGKT QL TA D+ LE+L R Sbjct: 262 WQHWWDTCSGAGGKTLQLRSLMQTATAKHNPFVGSIVSSDIRAHALEELSKRAQRAKFDG 321 Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + FD VLVDAPCS TGT RR+PD+ W D + A Q +L Sbjct: 322 ISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKAALQLDILS 381 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + VK GG +V++ CSL ++E+VV L+ P LVP+ + Sbjct: 382 RSSKAVKLGGSLVYATCSLSPVENEQVVSAFLQQHP-EFSLVPIRHPFTGEQTE------ 434 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F ++R Sbjct: 435 --MLTVWP--------FEANTDGMFVARMQR 455 >gi|312797598|ref|YP_004030520.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312169373|emb|CBW76376.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454] Length = 460 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 99/433 (22%), Positives = 170/433 (39%), Gaps = 34/433 (7%) Query: 28 LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLR 87 L + S + + ++ + R L R DA L ++ + + +LR Sbjct: 41 ALPDALATVHAGIASAQARGAIQDLAYRATRQLARADAWLATLVRRAPAE---HVANVLR 97 Query: 88 VSVAQILYLDV----ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI----ELL 139 + A + D D+ VV+ AV+ + H LVN++LR + R + E + Sbjct: 98 CAFALLAEPDATRAYPDFTVVNQAVDAIAARADVAHTKGLVNAVLRNMVRSRPALLAEAM 157 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAIS--DACISPLYIDLTVKFDIETWAHKLNAVM 197 P W+ + L+ + + + +A + D+ T+ +L Sbjct: 158 LDPVTRWNYPRWWIDALQRTWPDDAQRLLEVGNAHAPMTLRVNRRQTDVATYLERLRTSG 217 Query: 198 L-------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + P + LPGFA+G VQDA A L + + VLD CA Sbjct: 218 IDALRNSACPDTALTLREPMPVERLPGFAQGTVSVQDAGAQRAAALLDVRDRMRVLDACA 277 Query: 251 APGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLF 307 APGGKT L + ++ ALD R +++ NL RL L A + + + F Sbjct: 278 APGGKTGHLLECADIELVALDSDAARAARIKENLARLKLRASVQIGDAGEPSQWHDGRRF 337 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS++G +RRHPD+ W R + DI+ QR+++ ++ GG +++ CS Sbjct: 338 DRILADVPCSASGIVRRHPDIRWLRRSTDIIALVAEQRRIVQALWPLLERGGQLLYVTCS 397 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + ++ E+ + V L + R+ D Sbjct: 398 IFPEEGEQQAAWFEHALEDAVRLDAPGQILPTAARSGDHCDAHRDARLDLDQ-------- 449 Query: 428 SGMDGFFAVALRR 440 DGFF ++ Sbjct: 450 ---DGFFYARFQK 459 >gi|296211184|ref|XP_002752300.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 2 [Callithrix jacchus] Length = 843 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 306 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQTLINRGVN 365 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C+A Sbjct: 366 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSA 425 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 426 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 485 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 486 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 545 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 546 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 598 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 599 RFYPHTHNMDGFFIAKFKK 617 >gi|296211182|ref|XP_002752299.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 isoform 1 [Callithrix jacchus] Length = 810 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ +L + + ++ +A P + L A L + Sbjct: 273 ATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQTLINRGVN 332 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C+A Sbjct: 333 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCSA 392 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 393 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTVISHYDGRQFPKVVGGF 452 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++LLL I V K GG +V+ Sbjct: 453 DRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVY 512 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + + + R P + Sbjct: 513 CTCSIMVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EGFTRFRERRFHPSLRSTR 565 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 566 RFYPHTHNMDGFFIAKFKK 584 >gi|190889972|ref|YP_001976514.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli CIAT 652] gi|190695251|gb|ACE89336.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli CIAT 652] Length = 429 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 84/447 (18%), Positives = 150/447 (33%), Gaps = 44/447 (9%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++D Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ A +++ +++ Sbjct: 67 -----DSAAAIAHAVM-------------FRQWGFTPDRLAAELADDKFAPPPLSADALA 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 + IPEW + E +G + A + +DL + Sbjct: 109 AFAGRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKSSRD 167 Query: 188 TWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASASIPVQLF 237 L I + ++ + F +G + VQD + I L Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + +LD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + D VLVDAPC+ TGT RR PD W ++ + Q+ L Q F Sbjct: 288 DDPRGLSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VKPGG +++ CS+ Q++EE V++ +P + L + + A + Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFAAGNPDFQIVSALPAWDALFGNDAPRPHSSDALT 407 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + S+ DGFF L+R Sbjct: 408 V------TLTPASTDTDGFFFCRLQRK 428 >gi|299531357|ref|ZP_07044767.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni S44] gi|298720764|gb|EFI61711.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni S44] Length = 461 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 110/459 (23%), Positives = 171/459 (37%), Gaps = 54/459 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L ++ S +L + QR + V+A++ LR L R A+ Sbjct: 29 AVAKALHGIL-GGQSSKAVLAQ---------VPQRLRPGVQALLFQVLRNLGRAQALQKQ 78 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + K +L + +V+ AVE AK + R + +N+ LR Sbjct: 79 LAPRPPAPKVSALLSTALALAWDETQAPYPPFTLVNQAVEAAK-NGAARAQSGFINACLR 137 Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 R RE+ + P W+ RL+ + ++ I A + + L V Sbjct: 138 RFLRERDALVSATDNDPVAVWNHPAWWIARLKKDHPQDW-QTILAANNAQPPMTLRVNAQ 196 Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 T A NA+ E + LP F EG VQD +A L Sbjct: 197 KSTPAQYQNALQAMNLKSTAVAECGLQLEQAVPVQELPQFEEGWASVQDGAAQAAAPLLL 256 Query: 239 TLNNL------SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 VLD CAAPGGKTA G +VTAL++ R ++ L RL L Sbjct: 257 AGLPEPQGRPLRVLDACAAPGGKTAHLLERAAPGGIEVTALEIDPERARRIGETLSRLGL 316 Query: 289 YA-EDIIEMDAFDYCPKKLF-----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 A + + A + DA+L+DAPC+++G +RR PDV W R D+ + A Sbjct: 317 KAKVLVADASAPQAWFESQCGGQFFDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLAD 376 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++PGG +V+ CS+ K + + +Q L + L Sbjct: 377 IQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAA 436 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ DGFF L +L Sbjct: 437 KHDSVADN---------------PLGDHDGFFYALLEKL 460 >gi|114048257|ref|YP_738807.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-7] gi|113889699|gb|ABI43750.1| Fmu (Sun) domain protein [Shewanella sp. MR-7] Length = 457 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 91/451 (20%), Positives = 152/451 (33%), Gaps = 52/451 (11%) Query: 12 SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 LL ++ + +L + + +D+ ++R + R+ A D Sbjct: 35 IKLLFDEILNTKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKATGDH- 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ +L S L + E A+ + + L S L Sbjct: 92 ------QQAPQFFAMLSASA---LIEAHPWQDIASAWHELAQSPVDYQQLQSLSVSSLTD 142 Query: 131 VSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + ++PEWF + R I P + +T Sbjct: 143 KLALVRQQFPEASFELTDLLPEWFWQVCPIAPEL-RPNLIEAMSSRPPIWGRAQGINSQT 201 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L A+ + I L ++ + + EG +QD ++ + Q+ Sbjct: 202 AVKQLQALEIDASLSLYFDDAINLGTKSMNLNEISLYKEGKIEIQDLASQVIGQICSPEP 261 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVTAL-----------DVSKRRLEKLRCNLDRLHLYA 290 D C+ GGKT QL TA D+ LE+L R Sbjct: 262 WQHWWDTCSGAGGKTLQLRSLMQTATAKHNPFVGSIVSSDIRAHALEELSKRAQRAKFDG 321 Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + FD VLVDAPCS TGT RR+PD+ W D + A Q +L Sbjct: 322 ISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKAALQLDILS 381 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + VK GG +V++ CSL ++E+VV L+ LVP+ + Sbjct: 382 RSSKAVKQGGSLVYATCSLSPVENEQVVSAFLQQH-SEFSLVPIRHPFTGEQTE------ 434 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F ++R Sbjct: 435 --MLTVWP--------FEANTDGMFVARMQR 455 >gi|264676496|ref|YP_003276402.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni CNB-2] gi|262207008|gb|ACY31106.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni CNB-2] Length = 461 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 110/459 (23%), Positives = 171/459 (37%), Gaps = 54/459 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L ++ S +L + QR + V+A++ LR L R A+ Sbjct: 29 AVAKALHGIL-GGQSSKAVLAQ---------VPQRLRPGVQALLFQVLRNLGRAQALQKQ 78 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + K +L + +V+ AVE AK + R + +N+ LR Sbjct: 79 LAPRPPAPKVSALLSTALALAWDETQAPYPPFTLVNQAVEAAK-NGAARAQSGFINACLR 137 Query: 130 RVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 R RE+ + P W+ RL+ + ++ I A + + L V Sbjct: 138 RFLRERDALVSATDNDPVAVWNHPAWWIARLKKDHPQDW-QTILAANNAQPPMTLRVNAQ 196 Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 T A NA+ E + LP F EG VQD +A L Sbjct: 197 KSTPAQYQNALQAMNLKSTAVAECGLQLEQAVPVQELPQFEEGWASVQDGAAQAAAPLLL 256 Query: 239 TLNNL------SVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 VLD CAAPGGKTA G +VTAL++ R ++ L RL L Sbjct: 257 AGLPEPQGRPLRVLDACAAPGGKTAHLLERAAPGGIEVTALEIDPERARRIGETLSRLGL 316 Query: 289 YA-EDIIEMDAFDYCPKKLF-----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 A + + A + DA+L+DAPC+++G +RR PDV W R D+ + A Sbjct: 317 KAKVLVADASAPQAWFESQCGGQLFDAILLDAPCTASGIVRRQPDVRWLRRESDVTQLAD 376 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++PGG +V+ CS+ K + + +Q L + L Sbjct: 377 IQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAA 436 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ DGFF L +L Sbjct: 437 KHDSVADN---------------PLGDHDGFFYALLEKL 460 >gi|93007290|ref|YP_581727.1| Fmu (Sun) [Psychrobacter cryohalolentis K5] gi|92394968|gb|ABE76243.1| Fmu (Sun) [Psychrobacter cryohalolentis K5] Length = 524 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 116/524 (22%), Positives = 202/524 (38%), Gaps = 111/524 (21%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R+ L + + SL +LD L D+ A++ TLR ++ + Sbjct: 25 VRVRVIRTLLAI-QNGQSLASVLDPLL-----NSLHDGDKGFAHALLLTTLRQWYALERL 78 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LD + +S+ K+ ++ ++V + Q+LYL VAD+A + VE AK + H L+N+ Sbjct: 79 LDSLADNSIDEKE--VRTTIQVGLTQLLYLQVADHAAIHETVEAAKEIEF-AHATGLINA 135 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 ILR+V++ + ++ +P W +L+ + E+ + P + L V Sbjct: 136 ILRKVAKNPSKFRKKCDKKHSLPNWLAYQLKQDWS-EQYDDLMQGLRQPAPMFLRVNTAV 194 Query: 185 -DIETWAHKLNAVMLPTGGIRLK------------------------ELPESIVSLPGFA 219 IE + L + + L ++ +LP FA Sbjct: 195 TSIEDYQQALVEFEVEADLVELTSGLQLENSSDTATSNSIVTKGLRLHQSTAVNALPQFA 254 Query: 220 EGVWWVQDASAS--------------------IPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 G VQD A + + N + +LD CAAPGGK A Sbjct: 255 HGAASVQDMHAQLAAPLIHSALLNKLSVKNDDADGDMDTSNNEIRILDACAAPGGKLAHW 314 Query: 260 IV-----------------------SGAKVTALDVSKRRLEKLRCNLDRLHLY------- 289 + S K+TA+D R+E++ NL RL+L Sbjct: 315 LELISSDEQSPLFHVKQNEEFVSLVSKVKLTAIDNEAPRIERIYDNLQRLNLSQHDLQQA 374 Query: 290 ------AEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + + KK FDA+L+D+PC++TG IRRHPD+ R +D+ + Sbjct: 375 EKNIELNIVCADATTWQGAGKKKSKLVFDAILLDSPCTATGVIRRHPDISILRTEEDVEQ 434 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 +A Q +L +K GG +++ CS+ KQ++ E +Q + + + W Sbjct: 435 TALLQADILHNLWPQLKVGGYLLYVTCSILKQENVEQMQDFMTHYNNVAAVEFSDGCNW- 493 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + P + DGF+ L++ + Sbjct: 494 ------GIEQAIGRQCLPIDSKS-------GDGFYYALLQKTAE 524 >gi|14520982|ref|NP_126457.1| nucleolar protein [Pyrococcus abyssi GE5] gi|5458199|emb|CAB49688.1| Nucleolar protein from the nop2 family [Pyrococcus abyssi GE5] Length = 311 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 88/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 W + L E+ L + + + + V G Sbjct: 18 ERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWAREGFC 77 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 L P SI S P + G+ ++Q+AS+ P V D+ AAPGGKT+ L + Sbjct: 78 LTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLME 137 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320 + + A DV + RL++ R NL RL + + + FD +L+DAPC+ +G Sbjct: 138 NKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDAPCTGSG 197 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI ++P+ W R DDI Q KL+ + + +KPGGI+V+S CSL+ +++E V+Q V Sbjct: 198 TIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENEFVIQWV 257 Query: 381 LRSSPIPVELVPLNSAYWK-SIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + VEL+PL + + LS E R+ PD+ G GFF Sbjct: 258 LENF--DVELLPLKYGEPALTRPFGIELSDEIKKARRLYPDV--------HGTSGFFVAK 307 Query: 438 LRRL 441 +R+L Sbjct: 308 IRKL 311 >gi|254468625|ref|ZP_05082031.1| Fmu (Sun) domain protein [beta proteobacterium KB13] gi|207087435|gb|EDZ64718.1| Fmu (Sun) domain protein [beta proteobacterium KB13] Length = 420 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 96/451 (21%), Positives = 163/451 (36%), Gaps = 66/451 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L + L + + L +++ V +R Sbjct: 12 ALQDHLNSEHPADSNLSYFFKYNT--NLGVKERGEVAETYYGIIRNKL------------ 57 Query: 74 SLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVV-DLAVEQAKRDKENRHFAKLVNSILRRV 131 + + ++ + VV L +E++ D+E + + ++ + Sbjct: 58 ----------------LYENLMQSSQPENLVVAHLVIEKSYSDEEIKVLSPDFTISIQAI 101 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 ++ +PEW +L Y ++++ + + SP Y+D+ V E Sbjct: 102 KDRLKKISDLW-IRYSLPEWIFRKLAESYDEKKIKLVLNKLTSPSYLDVRVNTIKEKSRE 160 Query: 192 --------------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 K A + I +LP F +G+ VQD + I + Sbjct: 161 VIIKNLQDNLSINPKKIAASNLSPIGVRLPRGSQIQNLPIFKDGLIEVQDEGSQILSFIV 220 Query: 238 GTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 V D CA GGKT ++ ++ A DV+ +RL LR L R L Sbjct: 221 DANRKHMVADFCAGAGGKTLALGAMMSGSGRLYAFDVNDKRLTNLRKRLKRSGLSNTVCH 280 Query: 295 E----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D + FD VLVDAPCS GTIRR+PD+ W D D I + Q +L Sbjct: 281 HINNENDIRIKRLRGKFDRVLVDAPCSGLGTIRRNPDLKWKHDLDTIFEMQKKQLNILTA 340 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 K GG ++++ CS +++E+VV L+ + ++V + + + Sbjct: 341 ASKLTKLGGRLIYATCSFMPEENEDVVNSFLKDNSG-FKVVSIQP-----------ILDK 388 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I +T K MDGFFA L R+ Sbjct: 389 YDIAVTSSDFFKTKFDEHDMDGFFAAVLERV 419 >gi|326912704|ref|XP_003202687.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Meleagris gallopavo] Length = 613 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 132/320 (41%), Gaps = 28/320 (8%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM- 197 +A ++ + L + + ++ +A P + + A L Sbjct: 207 MAAYYSYSDFLLKMLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGV 266 Query: 198 -------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 G+ + + I + P + G + +Q AS+ +PV N +LD+C Sbjct: 267 NLDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVMALAPQENERILDMCC 326 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KL 306 APGGKT+ + + + + A D + RL + NL RL + + D + Sbjct: 327 APGGKTSYIAQLMKNTGMILANDNNAERLRSVVGNLHRLGVTNAVVSNCDGRQFPKVLGG 386 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPCS TG I + P + +D DI++ A Q++LLL I V + GG VV Sbjct: 387 FDRVLLDAPCSGTGVISKDPAIKTNKDEKDILRCAHLQKELLLSAIDSVSATSETGGYVV 446 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--L 420 + CS+ +++E VV L+ + + L+ + R P + Sbjct: 447 YCTCSITVEENEWVVDYALKKRNVRLVATGLDFG-------KEGFTRFKDRRFHPSLKST 499 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + MDGFF L++ Sbjct: 500 RRFYPHTHNMDGFFIAKLKK 519 >gi|224043899|ref|XP_002193312.1| PREDICTED: nucleolar protein 1, 120kDa [Taeniopygia guttata] Length = 778 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 28/320 (8%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM- 197 +A ++ +L + + ++ +A P + + A L Sbjct: 370 MAAYYSYSDFLLAKLMDIFPLPELINFLEANEVPRPVTIRTNTLKTRRRDLAQALINRGV 429 Query: 198 -------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 G+ + + I + P + G + +Q AS+ +PV N +LD+C Sbjct: 430 NLDPLGKWSKTGLVIYDSTVPIGATPEYLAGHYMLQGASSLLPVMALAPQENERILDMCC 489 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306 APGGKT+ + + + + A D S RL + NL RL + + D + Sbjct: 490 APGGKTSYIAQLMKNTGMILANDSSAERLRSVVGNLHRLGVTNAVVSNCDGRQFPKVIGG 549 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVV 362 FD VL+DAPCS TG I + P V +D DI + A Q++L+L I V GG +V Sbjct: 550 FDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELILSAIDSVNAASETGGYIV 609 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--L 420 + CS+ +++E VV L+ + + L+ + R P + Sbjct: 610 YCTCSIMVEENECVVDYALKKRNVRLVATGLDFG-------KEGFTRFKDRRFHPSLKST 662 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 663 RRFYPHTHNMDGFFIAKFKK 682 >gi|269123621|ref|YP_003306198.1| Fmu (Sun) domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314947|gb|ACZ01321.1| Fmu (Sun) domain protein [Streptobacillus moniliformis DSM 12112] Length = 422 Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 97/438 (22%), Positives = 184/438 (42%), Gaps = 35/438 (7%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 LL V+ + L + ++++ ++ ++ + ++NVTL+ L ID V+ L Sbjct: 10 LLDEVIENKKYSNLQLKYMFENNSY---TKGEKAFLNNMLNVTLKNLIYIDYVILK-LAR 65 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 S+ RK +Q+LR+S+AQILY V+ AVE K + N + A +NS LR R Sbjct: 66 SIKRKT---KQILRLSIAQILYTSTDIAGVIYEAVELGKEE--NIYQANFINSTLRNFIR 120 Query: 134 EKIELL--QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF------D 185 +K E+ P WF +++ N +G+++ + + V D Sbjct: 121 KKDEIFEITPENIKLSYPTWFYDKVRNQFGEDKFREVLKRYKGKSTFSVRVNHKKISVND 180 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + +++ +L +++ + G +QD S+ + V + N V Sbjct: 181 FKDLLKMVDSEILFNISDVYYLNNNNVLKTKAYLTGDIVIQDGSSLLVVDMLAPSNEDEV 240 Query: 246 LDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 LD+ AAPGGK + K+ A D+ + ++ L+ + I D ++ Sbjct: 241 LDVAAAPGGKSLAILQKYNPKKLVATDIHEHKVNMLKEFESKYM--NFKAILADGREFSE 298 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 +D +L+D PCS G + + P+ ++ D I Q+K+ +K GG +V+ Sbjct: 299 GI-YDKILLDVPCSGLGVLTKKPEKVYEIDLKVIKAIKKLQKKIFDNTYKLLKNGGEMVY 357 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C++ + ++ V L +E+V D+ + G I Sbjct: 358 STCTILENENTNNVAYFLEKY-SDLEVVDFEF----PQDVKIIKDEFGG--------NLI 404 Query: 424 DGVSSGMDGFFAVALRRL 441 + +DGF+ + R+ Sbjct: 405 SYENEYLDGFYMIKFRKK 422 >gi|91090670|ref|XP_974410.1| PREDICTED: similar to CG8545 CG8545-PA [Tribolium castaneum] gi|270013309|gb|EFA09757.1| hypothetical protein TcasGA2_TC011896 [Tribolium castaneum] Length = 731 Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 123/319 (38%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199 ++ E+ + VL +A + + A L + Sbjct: 231 CTYYSYNDFLMEKFMQLFPLTEVLEFLEASEVQRPLTIRTNSLKTRRRDLAQALINRGVN 290 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 291 LDPVGKWSKVGLVVYSSQVPIGATPEYLAGHYIIQGASSLLPVMALAPQENERILDMAAA 350 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A DV+ R++ + N RL + I +D + F Sbjct: 351 PGGKASHIAALMKNTGVLFANDVNSERIKAIVGNFHRLGVVNSVITCVDGRKFPKILKGF 410 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPC+ TG + + V ++D DI + QR+LLL I + GG +V+ Sbjct: 411 DRVLLDAPCTGTGVVAKDQSVKTSKDEQDIQRCYNLQRELLLAAIDCLNAKSETGGYLVY 470 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ +++E VV L+ + + L + R P + Sbjct: 471 STCSVLPEENEWVVDYALKKRNVKLVDTGLEFGN-------EGFTNYRQFRFHPSLKLTR 523 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF R+ Sbjct: 524 RFYPHTHNMDGFFVAKFRK 542 >gi|294101395|ref|YP_003553253.1| Fmu (Sun) domain protein [Aminobacterium colombiense DSM 12261] gi|293616375|gb|ADE56529.1| Fmu (Sun) domain protein [Aminobacterium colombiense DSM 12261] Length = 442 Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 101/454 (22%), Positives = 181/454 (39%), Gaps = 42/454 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++L+ V K + L +++ D+IL ++V LR V + Sbjct: 5 EAALYVLTEV-SKGRFASESLRKVSDR-----MTEGDRILASSLVYAALRRQTLWKKVCE 58 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L + + L + A I+ L V+ A+ + + A++VN++L Sbjct: 59 NFLRFPFDSLSWCTRHALVIGAAGIIELRHFAPMVLVSALVDEIKKRGLEKEARIVNAVL 118 Query: 129 RRVSREKIELLQRIAGISII---------PEWFKERLENFYGKERVLAISDACISPLY-- 177 RV ++ + S P + + ++ +G+ L + + Y Sbjct: 119 HRVEERGKFIVDEMKKSSSFQDKALLGGIPLFVAYQWKDTWGQAETLKLINLFRIRPYAS 178 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASAS 231 + + K I + L + L E +LPGF EG VQ S+ Sbjct: 179 LRVLPKDHIPSLVKGLKQDHIYGWPSPLLECSVRTASFAFPPNLPGFNEGKVTVQSESSM 238 Query: 232 -IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHL 288 + + +LD+CA G KT Q+ AK+ A ++SK R R L RL + Sbjct: 239 LAGEMVTRLWKDGLILDMCAGRGIKTGQIATLLPHAKIEAWELSKGRCAAARRELKRLSI 298 Query: 289 Y-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 I + D+ P+ + V +DAPCS +GT RHP+ W + + + Q+ L Sbjct: 299 SQRVIIRQGDSLSMSPQSTPNLVFLDAPCSGSGTWSRHPESRWALTKEKMEELVQLQKGL 358 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + + V PGG++++S CSL +Q++E+V+ +VL + +E+ S Sbjct: 359 LRKAVDLVAPGGLILYSTCSLLRQENEQVIAEVLADNHNLIEMSLPLSGRHVRKGRPWGT 418 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFF-AVALRR 440 I P + +DGF+ L+R Sbjct: 419 Y------IWPLLPW--------LDGFYMMAILKR 438 >gi|110632825|ref|YP_673033.1| Fmu (Sun) [Mesorhizobium sp. BNC1] gi|110283809|gb|ABG61868.1| Fmu (Sun) [Chelativorans sp. BNC1] Length = 427 Score = 163 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 144/450 (32%), Gaps = 46/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + + F D+ + V LR + D Sbjct: 8 AAAIEILEDIETRHRPAADAMRDWGLSHRFAG--AGDRAAIGNFVYDALRRRRAAAWIFD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + L + +L V E + ++R ++ Sbjct: 66 ADSPRT-----------LVLGSY-LLESGVLPQ-------ELGRLIADDRFAPSMLTEAE 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185 + ++ + PEW E L + A S +D+ V Sbjct: 107 LAALQARLSEELPAPARANAPEWC-EPLMEEAFGAAWVDEGAALASRPPLDMRVNRLKAS 165 Query: 186 IETWAHKLNAVMLPTGGIRL----------KELPESIVSLPGFAEGVWWVQDASASIPVQ 235 E L I +I + P F +G + VQD + I + Sbjct: 166 REKVLASLARAGAKPARIAPSGLRIAPISGDGRHPNIQAEPAFQKGWFEVQDEGSQIVAE 225 Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L G VLD CA GGK + ++ + ++ A D K+RL + L R Sbjct: 226 LAGPAQGSQVLDFCAGAGGKTLAFSAMMDNRGQIYAFDADKQRLAPIFDRLKRAGCRNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 +I + + D V+VDAPC+ +GT RR PD W + Q +L Sbjct: 286 VIADEGQLTRLEGQMDLVVVDAPCTGSGTWRRRPDAKWRLTAQQLEARRAEQATILDAAS 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +VKPGG + + CS+ ++++ E L SP + A Sbjct: 346 RYVKPGGRLAYITCSIFQEENAEQASAFLARSPQFSAADHGALWRERFNSAAAEPRIGNG 405 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 I +TP ++G DGF+ R Sbjct: 406 ITLTP--------ATTGTDGFYFACFGRAA 427 >gi|171464329|ref|YP_001798442.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193867|gb|ACB44828.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 417 Score = 163 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 99/411 (24%), Positives = 164/411 (39%), Gaps = 41/411 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ +S VM SLT +LD L ++ +V+++ LR R ++ Sbjct: 18 IAAQAISEVMD-GRSLTEVLDQ---------LDAHERPIVQSLSFDALRKWVRSHELIKQ 67 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDV-----ADYAVVDLAVEQAKRDKENRHFAKLV 124 + PR + LL V +A L + Y +VD AV+ + + LV Sbjct: 68 FAPKTPPR---EVDHLLSVGIALFLQNEAGGKSYPAYTIVDQAVKACGEYDKTMYAKGLV 124 Query: 125 NSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178 N++LR+ E + P W++ ++ Y K+ + + Sbjct: 125 NAVLRKVSLMVQPPEGEKRYTPDPIPMYGPAWWRANIKRNYSKQWQSILFQQAKRAPLIL 184 Query: 179 DLTVKFDIETWAHKLNAV------------MLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + K L A + L + PGF VQ Sbjct: 185 RVYQKQYAREQYQALLAEAGISSKPIAEVAGVRRSFALLLPEAVPVSDPPGFYSSAVSVQ 244 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDR 285 DA A + L + VLD CAAPGGKTA L+ + + AL++ R+ K+ NLDR Sbjct: 245 DAGAQLAAVLLNPQDGELVLDACAAPGGKTAHLLKLADCSMRALELDGERIGKIGGNLDR 304 Query: 286 LHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 L L+++ + + FD +L+DAPCS +G + RHPD+ + R D+ Sbjct: 305 LRLHSDKVRVLRGDASKAAWWDGTPFDKILLDAPCSVSGIVARHPDIPFLRREADVRALQ 364 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 QR +L Q +K GG +++ CS+ ++ E+ P V L Sbjct: 365 ERQRAILNQAWKMLKSGGALLYVTCSIFVEEGEDKANWFTEQHPNAVRLDA 415 >gi|320169159|gb|EFW46058.1| nucleolar family member protein [Capsaspora owczarzaki ATCC 30864] Length = 746 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 140/360 (38%), Gaps = 21/360 (5%) Query: 93 ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK-IELLQRIAGISIIPEW 151 +L + D +V + AK R ++ + + R ++ + + P Sbjct: 212 LLQQRIKDNIMV--LADFAKLRDPERSRSEYMEVLTRDLTLYYGYSDYLMGKLLELFPLG 269 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 R ++I + DL G + + + P Sbjct: 270 EIVEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLV-IFDSPVP 328 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268 I + P + G + +Q AS+ +PV + +L +CAAPGGKTA + + + A Sbjct: 329 IGATPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAPGGKTAYCAALMKNTGVIFA 388 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPD 327 D SK RL L N R+ + + D + FD VL+DAPCS TG I + Sbjct: 389 NDASKDRLRALVANTHRMGITNTIVCNYDGRAFPKVMGNFDRVLLDAPCSGTGVIAKDQS 448 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 V + DDI++ + Q++L+L I V K GG +V+S CS+ +++E V+ LR Sbjct: 449 VKTNKSDDDIMRCSTLQKELILAAIDSVDANSKTGGYIVYSTCSITVEENEWVIDYALRK 508 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFFAVALRRL 441 + + L+ R P + + MDGFF +++ Sbjct: 509 RNVKLVETGLDFGQPGFKSFRE-------RRFHPTVSLSRRFYPHVHNMDGFFVAKFKKI 561 >gi|320169127|gb|EFW46026.1| ribosomal RNA small subunit methyltransferase b [Capsaspora owczarzaki ATCC 30864] Length = 732 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 82/360 (22%), Positives = 140/360 (38%), Gaps = 21/360 (5%) Query: 93 ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK-IELLQRIAGISIIPEW 151 +L + D +V + AK R ++ + + R ++ + + P Sbjct: 243 LLQQRIKDNIMV--LADFAKLRDPERSRSEYMEVLTRDLTLYYGYSDYLMGKLLELFPLG 300 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 R ++I + DL G + + + P Sbjct: 301 EIVEFLEANESPRPISIRTNTLKTRRRDLAQALINRGVNLDPIGKWSKVGLV-IFDSPVP 359 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268 I + P + G + +Q AS+ +PV + +L +CAAPGGKTA + + + A Sbjct: 360 IGATPEYLAGHYMIQSASSFLPVMAMAPQEHERILTMCAAPGGKTAYCAALMKNTGVIFA 419 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPD 327 D SK RL L N R+ + + D + FD VL+DAPCS TG I + Sbjct: 420 NDASKDRLRALVANTHRMGITNTIVCNYDGRAFPKVMGNFDRVLLDAPCSGTGVIAKDQS 479 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 V + DDI++ + Q++L+L I V K GG +V+S CS+ +++E V+ LR Sbjct: 480 VKTNKSDDDIMRCSTLQKELILAAIDSVDANSKTGGYIVYSTCSITVEENEWVIDYALRK 539 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFFAVALRRL 441 + + L+ R P + + MDGFF +++ Sbjct: 540 RNVKLVETGLDFGQPGFKSFRE-------RRFHPTVSLSRRFYPHVHNMDGFFVAKFKKI 592 >gi|300775571|ref|ZP_07085432.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910] gi|300505598|gb|EFK36735.1| tRNA/rRNA cytosine-C5-methylase [Chryseobacterium gleum ATCC 35910] Length = 401 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 77/453 (16%), Positives = 154/453 (33%), Gaps = 77/453 (16%) Query: 8 RLVSS---HLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R ++ L K +++ + +D+ +V I +R+ R+ Sbjct: 6 RNLAIGIHDALQETFFEKNKYADKVIERLLKANKKWG--SQDRAVVSEIFYNIIRWKKRL 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + + + K + LL K+ F + Sbjct: 64 EYYMGEGV-KPNNIYKLIIAYLL----------------------WSKTNYKKFEEFDGI 100 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + + ++ + A IP+W E LE G ++ + Sbjct: 101 KIADILTKLKKNTVPTK--AIEHSIPDWLAETLEKELGANWEREMTALNEQAP--TVLRA 156 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQDASASIP 233 + T +L + + G + + F EG++ VQDAS+ Sbjct: 157 NSLRTTTKELISDLSDEGVVSFPVNGYPDAVQLEEKKNVFLTTAFKEGLFEVQDASSQKI 216 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V+D CA GGKT L + + ++ ALD+ +L +L+ R + Sbjct: 217 GYFLDVKEGQRVVDACAGAGGKTLHLAALMKNKGQIIALDIFDWKLAELKRRAKRAGAHN 276 Query: 291 EDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + + D +L+DAPCS G ++R+PD W D D I + Q+++L Sbjct: 277 IETRMISDNKVIKRLHEKADRLLIDAPCSGLGVLKRNPDSKWKIDQDFIDRIKKEQQQIL 336 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ ++ V++ ++++P + + Sbjct: 337 QDYSKMLKKGGKMVYATCSILPSENNLQVEEFIKNNPGFKMIKDEKVMPSE--------- 387 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G DGF+ + R+ Sbjct: 388 --------------------GYDGFYMALIERV 400 >gi|117921308|ref|YP_870500.1| Fmu (Sun) domain-containing protein [Shewanella sp. ANA-3] gi|117613640|gb|ABK49094.1| Fmu (Sun) domain protein [Shewanella sp. ANA-3] Length = 469 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 152/451 (33%), Gaps = 52/451 (11%) Query: 12 SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 LL ++ + +L + + +D+ ++R + R+ A D Sbjct: 47 IKLLFDEILNTKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKATGDH- 103 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ +L S L + E A+ + + L + L Sbjct: 104 ------QQAPQFFAMLSASA---LIEAHPWQDIAQAWHELAQSPVDYQQLQSLSVNRLTD 154 Query: 131 VSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + ++ ++PEWF + R I P D +T Sbjct: 155 KLALVRQQFPEVSFELTDLLPEWFWQVCPIAAEL-RPNLIEAMSSRPPIWGRAQGIDSQT 213 Query: 189 WAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 +L A+ L ++ + + EG +QD ++ + Q+ Sbjct: 214 AVKQLQALEIDASLSPYFADAFNLGTKSMNLNEISLYKEGKIEIQDLASQVIGQICAPDP 273 Query: 242 NLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDVSKRRLEKLRCNLDRLHLYA 290 D C+ GGKT QL + + D+ LE+L R Sbjct: 274 WQHWWDACSGAGGKTLQLRSLMQTAATKQNPLVGSIVSSDIRAHALEELSKRAQRARFDG 333 Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + FD VLVDAPCS TGT RR+PD+ W D + A Q +L Sbjct: 334 ISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKATLQLDILS 393 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + VK GG +V++ CSL ++E+VV L+ P LVP+ + Sbjct: 394 RSSKAVKQGGSLVYATCSLSPVENEQVVSAFLQQHP-EFSLVPIRHPFTGEQT------- 445 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F ++R Sbjct: 446 -KMLTVWP--------FEANTDGMFVARMQR 467 >gi|296131699|ref|YP_003638946.1| RNA methylase, NOL1/NOP2/sun family [Thermincola sp. JR] gi|296030277|gb|ADG81045.1| RNA methylase, NOL1/NOP2/sun family [Thermincola potens JR] Length = 460 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 129/308 (41%), Gaps = 26/308 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 + +P F E+++ G+E ++ + V ++ ++ + P Sbjct: 1 MPELPAKFIEKMKLLLGEEEFNLFCESYGQEAAQGIRVNPLKISRDSLVSRVPFSLRPVP 60 Query: 202 GIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 RL P A G++++Q+ SA V++ +LDLCAAPGGK+ Sbjct: 61 WCRLGFYYSPDDRPGKHPYHAAGLYYIQEPSAMAVVEILQPQPGERILDLCAAPGGKSTH 120 Query: 259 LIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVD 313 + + A +++ R++ L NL+R + + FD +LVD Sbjct: 121 IYSYLGHTGLLVANEINANRVKALAENLERWGARNILVTNETPEKLAERMPAYFDKILVD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ P+ + A Q+ LL Q S +KPGG++V+S C+ +++ Sbjct: 181 APCSGEGMFRKLPEACLDWSEGKSQRCAAMQKNLLAQAASMLKPGGVLVYSTCTFSPEEN 240 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE V L++ E+ P+ + + +A G +RI P ++ G Sbjct: 241 EEQVNSFLQAH-NDFEICPVENDWLAPGTLA------GTVRIWPHKVQGE--------GH 285 Query: 434 FAVALRRL 441 F LR+ Sbjct: 286 FVARLRKK 293 >gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500] Length = 403 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 27/320 (8%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK--------- 192 +A W + + L +A + + + Sbjct: 1 MATYFGYSSWLVDVFLKIFNVSETLEFLEANETQRPLTIRTNTLKTKRKDLADVLSTRGV 60 Query: 193 -LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 L + G+ + + +I + P + G + Q AS+ +PV VLD+CA+ Sbjct: 61 HLEPIKWSQVGLTIYDSQVAIGATPEYLAGHYIQQSASSFLPVLALEPQPGERVLDMCAS 120 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT + + + + A D++K R+ L N+ RL + + +D +Y + F Sbjct: 121 PGGKTTYIASLMKNTGVLVANDINKERMRSLVANIHRLGVRNTVVSNLDGREYPSRMGGF 180 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VLVDAPC G I + + T+ D+ K Q++L+L I V K GGI+V+ Sbjct: 181 DRVLVDAPCVGLGVIAKDQQIKMTKSERDVTKCTHIQKELILHAIDSVDANSKTGGIIVY 240 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CSL +++E VV L+ + + + + R P+ + + Sbjct: 241 STCSLTVEENEAVVDYALKKRHVQLVDTSIEFGVQGFTNYREQ-------RFNPNLILTK 293 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + + MDGF+ ++L Sbjct: 294 RFYPHTHNMDGFYVAKFKKL 313 >gi|256071287|ref|XP_002571972.1| nucleolar protein nol1/nop2 [Schistosoma mansoni] gi|238657122|emb|CAZ28202.1| nucleolar protein nol1/nop2, putative [Schistosoma mansoni] Length = 479 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 24/316 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNA----- 195 ++ +L + + KE V + + T+K A L Sbjct: 162 CSRYSYNQFLMVKLLDLFPKEIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNL 221 Query: 196 ---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 G+ + + + P + G + +Q AS+ +PV +LDLCAAP Sbjct: 222 DPLEPWSKVGLVVYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAP 281 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FD 308 GGKT + + + + A +++ R + L N R+ + I + + FD Sbjct: 282 GGKTTYIAQLMKNTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSNFD 341 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS TG I + P V T++ D+I K Q++LL+ I K GG VV+S CS+ Sbjct: 342 RVLVDAPCSGTGIIAKDPSVKTTKNNDEIQKCVELQKRLLVAAIDSCKVGGYVVYSTCSI 401 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML--EKIDGV 426 +++E VV LR + +E L + + P M + Sbjct: 402 LVEENENVVNFALRRRKVRLEETKLFG--------EKGFTAFKGYQFHPHMTRVRRFYPH 453 Query: 427 SSGMDGFFAVALRRLI 442 +DGFF ++++ Sbjct: 454 KHNVDGFFVAKMKKMA 469 >gi|256820374|ref|YP_003141653.1| Fmu (Sun) domain-containing protein [Capnocytophaga ochracea DSM 7271] gi|256581957|gb|ACU93092.1| Fmu (Sun) domain protein [Capnocytophaga ochracea DSM 7271] Length = 412 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 84/453 (18%), Positives = 158/453 (34%), Gaps = 67/453 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L+ + + +++ + RD+ + + +R+ Sbjct: 9 MKLHRNLVDAVIEGLTFIFNEGQYADKVVEKQLKKDKRWG--ARDRAFIAETIYDIVRWK 66 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + + +++ L R+ +V K Sbjct: 67 RLYAEIAEVY-------EPFTVHNLRRMFAVW-----------------ATLKSIALPDW 102 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ RR+ + EL + +P+W G+ A S + Sbjct: 103 GNYFEDTPARRIKGKFDELSKVRKLRESVPDWLDTLGAQELGETLWTDELHALNSLAPVV 162 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASA 230 L V +E L + T +R +I FA+G++ VQDAS+ Sbjct: 163 LRVNTLKTSLEHLQQFLRQEGVETYPLRDYPDALQLVERSNIFKTQAFADGLFEVQDASS 222 Query: 231 SIPVQLFG-TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 V+D CA GGKT L + + ++ A+D+ +++L++L+ R Sbjct: 223 QKVAPFMQIDDKVKRVIDTCAGAGGKTLHLATLMQNKGQIIAMDIYEQKLQELKRRARRN 282 Query: 287 HLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ + ++ FD VL+DAPCS G +RR+PD W + + + Q+ Sbjct: 283 GVFNIETKLIEPKQLKRMHGTFDRVLIDAPCSGLGVLRRNPDAKWKLQPEFLDEIRTTQQ 342 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L Q +K GG +V++ CS+ ++ + VQ L S + Sbjct: 343 EILQQYSKLLKKGGKLVYATCSILPSENHQQVQTFLASEVGKEYRLEAEEV--------- 393 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 I SG DGF+ L Sbjct: 394 -----------------IFAHQSGYDGFYMARL 409 >gi|256071289|ref|XP_002571973.1| nucleolar protein nol1/nop2 [Schistosoma mansoni] gi|238657123|emb|CAZ28203.1| nucleolar protein nol1/nop2, putative [Schistosoma mansoni] Length = 490 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 14/244 (5%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + P + G + +Q AS+ +PV +LDLCAAPGGKT + + Sbjct: 245 VYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAPGGKTTYIAQLMK 304 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320 + + A +++ R + L N R+ + I + + FD VLVDAPCS TG Sbjct: 305 NTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSNFDRVLVDAPCSGTG 364 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 I + P V T++ D+I K Q++LL+ I K GG VV+S CS+ +++E VV Sbjct: 365 IIAKDPSVKTTKNNDEIQKCVELQKRLLVAAIDSCKVGGYVVYSTCSILVEENENVVNFA 424 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML--EKIDGVSSGMDGFFAVAL 438 LR + +E L + + P M + +DGFF + Sbjct: 425 LRRRKVRLEETKLFG--------EKGFTAFKGYQFHPHMTRVRRFYPHKHNVDGFFVAKM 476 Query: 439 RRLI 442 +++ Sbjct: 477 KKMA 480 >gi|282891223|ref|ZP_06299726.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498916|gb|EFB41232.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 417 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 172/448 (38%), Gaps = 45/448 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 ++AR + + +++ L+ L+ + L D + I ++R Sbjct: 2 PQIHAREAAFLAVYSFLKEGKFLSESLENWKQKESPSSL---DFSFAQDIAYGSVRMALA 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +D + K + LLR ++ Q + YA+ + AK+ + F+ Sbjct: 59 LDYIAKSTAERQSLSLKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYC-HPTFS 117 Query: 122 KLVNSILRR-----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 +N++LR+ + LQ ++ P E + +G E+ + + P Sbjct: 118 SFLNALLRKLGSGIPPLPEGNSLQDLSIRYSYPLPLVEAFLDDFGLEKCKQMLELGNHPA 177 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF-AEGVWWVQDASAS--IP 233 + ++ + + + + +L F ++Q+ + + Sbjct: 178 PTMVRIRPHVSLTEDEKEKLTCIPELSPHLACIKETGTLSIFSQSPHTYIQNGTPYLLME 237 Query: 234 VQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N ++LDLCA+PGGK A A + A DVS+R+L+ L+ N + L Sbjct: 238 HLRQSAENPQTILDLCASPGGKLLLAHDFYPSATLFANDVSERKLKTLQENCHKYQL-NV 296 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + + FD ++VDAPCS+TG + + P+ W + + + Q +LL Sbjct: 297 SLSCSKGEFFASDRRFDLIIVDAPCSNTGVLNKRPEARWRFSPESLKQLEETQLQLLAHA 356 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + + G + + CS+ Q++E++ QK+ + S + + Sbjct: 357 RTLLSDKGEIWYLTCSILSQENEKLAQKISQKSGLFMR---------------------- 394 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALR 439 + I + G+DG FA ALR Sbjct: 395 -------TSQTILPNALGLDGGFACALR 415 >gi|327192007|gb|EGE58988.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli CNPAF512] Length = 429 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 151/448 (33%), Gaps = 46/448 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++D Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ A +++ + + Sbjct: 67 -----DSAAAMAHAVM-------------FRQWGFTPDRLAAELADDKFAPPSLAADALA 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + IPEW + E +G + A + +DL + Sbjct: 109 AFASRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKASRD 167 Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237 + A+ ++ + F +G + VQD + I L Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 ++ +LD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LAKDDEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + D VLVDAPC+ TGT RR PD W ++ + Q+ L Q F Sbjct: 288 DDPRGLSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY-WKSIDMAMALSPEGWI 413 VKPGG +++ CS+ Q++EE V++ +P + L + D S +G Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFAADNPDFQIVSALPAWDALFGKDAPRPHSSDG-- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + S+ DGFF L+R Sbjct: 406 -----LAVTLTPASTDTDGFFFCRLQRK 428 >gi|157376427|ref|YP_001475027.1| Fmu (Sun) domain-containing protein [Shewanella sediminis HAW-EB3] gi|157318801|gb|ABV37899.1| Fmu (Sun) domain protein [Shewanella sediminis HAW-EB3] Length = 459 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 151/447 (33%), Gaps = 51/447 (11%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 VM K+ ++ + + +D+ ++R + R+ L+ Sbjct: 41 HQVMDKQQPADRVVGEYFRVNKKHG--SKDRRVIRESLFAMFRWWG----WLNKFSD--- 91 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 + + + A + A + ++ E + D + + S K Sbjct: 92 -AQSSQAWFSMLTATATM--ESHAWHDIIQAWGEFSGIDFSGSSYNQDAPSTAFPCVSSK 148 Query: 136 IELLQ------RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 E + ++P WF + +R+ + P D T Sbjct: 149 CEWMNAQFAPLTFDTDELVPGWFWQVCPIEDAAQRLAMVESLSSRPPIWSRAQNIDTTTA 208 Query: 190 AHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 +LN A + I L ++ L + EG +QD + + + N Sbjct: 209 IEQLNLVDVPATASDYFSDTINLGHKSINLNGLSLYKEGKLEIQDLGSQVIGHICAPKEN 268 Query: 243 LSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 D C+ GGK Q S + A D+ ++ LE+L R + Sbjct: 269 DLWWDTCSGAGGKSLQLRSLMLQQSSQSTGSIIASDIRRKPLEELAKRAKRAGFKGITVS 328 Query: 295 EMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + P FD VLVDAPCS TGT RR+PD+ W + + Q +L + Sbjct: 329 PWKSDELPVPHAHFDGVLVDAPCSCTGTWRRNPDMRWIDAVEVVQDKPELQLDILRRSSQ 388 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GG +V++ CSL ++EEVV L +SI + + Sbjct: 389 AVKRGGTLVYATCSLSPVENEEVVNAFLAEQSEF---------TLESITHPFTGNETEML 439 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + DG F +RR Sbjct: 440 TVFP--------FEADTDGMFVARMRR 458 >gi|237746959|ref|ZP_04577439.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS] gi|229378310|gb|EEO28401.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS] Length = 441 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 117/452 (25%), Positives = 181/452 (40%), Gaps = 52/452 (11%) Query: 8 RLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL ++ ++ V K SL L + D + + ++ I TLR L + + Sbjct: 22 RLAGAADAVTRV-AKGQSLPDALTAVFSDVSA---DAAARGAIQDIAYHTLRQLGLVSFL 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQAKRDKENRHFAK 122 + LQ LL ++A ++ L Y VD AVE A + R Sbjct: 78 TRKLTTRPPE--PVMLQSLLHCALALLIPENNTLRYEPYTTVDQAVEAAAAIRVLRKAKG 135 Query: 123 LVNSILRRVSREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 LVN++LRR RE+ Q P W+ E+ + Y I A + Sbjct: 136 LVNAVLRRFLREQPNFLKAARQDSEASWNYPGWWIEQAQQAYPVHW-KTILSAGNGVPPL 194 Query: 179 DLTVKFDIETWAHKLN-AVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASAS 231 L V T L A G + + + +PGF EG+ VQDA+A Sbjct: 195 TLRVNVRKTTVNDYLELAEAAGIGCMAIGPYAVKLIQPIPVNRIPGFMEGLVSVQDAAAQ 254 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA 290 + L G + + VLD CAAPGGK ++ + ALD +RRL ++ NL+RL L A Sbjct: 255 LAAPLLGLEDGMKVLDACAAPGGKAGHMLEMAHIDLLALDRDRRRLRMIQENLERLGLRA 314 Query: 291 -EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D+ K LFD +L D PC+++G IRRHPD+ W R D + + ++L Sbjct: 315 DIKTGDATRSDWWDKSLFDCILADVPCTASGIIRRHPDIRWLRRQSDSHELSLVSARILK 374 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +KPGG ++ + CS+ ++SE + Sbjct: 375 NLWPMLKPGGKLLLATCSIWPEESERQAEAFAA--------------------------Y 408 Query: 410 EGWIRI-TPDMLEKIDGVSSGMDGFFAVALRR 440 G +R+ P L + DG F ++ Sbjct: 409 SGALRLPAPGQLLPTVNGMNDHDGLFYALFKK 440 >gi|312377716|gb|EFR24477.1| hypothetical protein AND_10896 [Anopheles darlingi] Length = 885 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 134/335 (40%), Gaps = 28/335 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183 R L + + E+F L + + +L +A I + Sbjct: 297 PERSRCEYIDLLRKDLCLYYSYNEYFMNLLMDLFSPNELLEFLEASELQRPITIRTNSLK 356 Query: 184 FDIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L G+ + + + P + G + +Q S+ +PV Sbjct: 357 TRRRDLAQALINRGINLDPIGKWSKDGLVVYTSQVPLGATPEYFAGHYMLQGGSSMLPVL 416 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 N +LD+CAAPGGK++ + + + + D ++ RL + N RL + Sbjct: 417 ALAPEENERILDMCAAPGGKSSHIAALMKNTGVLVVNDSNRERLHAVLGNFHRLGVQNAI 476 Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 I MD + FD VL+DAPC+ +G I + P V ++ D+ K QR+LLL Sbjct: 477 ITCMDGIKFRDAMKGFDRVLLDAPCTGSGVIAKDPSVKTSKTEIDVQKCYNLQRRLLLSA 536 Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 I + K GG +V+S CS+ Q++E V+ L+ V LVPL + L Sbjct: 537 IDCLSAKSKTGGYLVYSTCSVLPQENEWVIDFALKKR--NVRLVPLGIDFGV-----EGL 589 Query: 408 SPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440 + G R M + + MDGFF L++ Sbjct: 590 TRFGVQRYHSSMKLTRRFYPHTHNMDGFFVAKLQK 624 >gi|221069396|ref|ZP_03545501.1| sun protein [Comamonas testosteroni KF-1] gi|220714419|gb|EED69787.1| sun protein [Comamonas testosteroni KF-1] Length = 461 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 113/459 (24%), Positives = 176/459 (38%), Gaps = 54/459 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L ++ S +L + QR + V+A++ LR L R A+ Sbjct: 29 AVAKALHGIL-GGQSSKAVLAQ---------VPQRLRPGVQALLFQVLRNLGRAQALQRQ 78 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++ + K +L + +V+ AVE AK + R + +N+ LR Sbjct: 79 LVSRAPAPKVSALLSTALALAWDEAQAPYPPFTLVNQAVEAAK-NGAARAQSGFINACLR 137 Query: 130 RVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 R RE+ + P W+ RL+ + ++ I A + + L V Sbjct: 138 RFLRERDALVSATDNDPVAVWNHPAWWIARLKKDHPQDW-QTILAANNAQPPMTLRVNAQ 196 Query: 186 IETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 T A +A+ E + LP F EG VQDA+A L Sbjct: 197 KSTAAQYQDALQAMGLKATAVAECGLQLEQAVPVQELPHFDEGWTSVQDAAAQAAAPLLL 256 Query: 239 TLNNL------SVLDLCAAPGGKTAQLIVSGAK----VTALDVSKRRLEKLRCNLDRLHL 288 VLD CAAPGGKTA LI VTAL++ R ++ L RL L Sbjct: 257 AGLPQPQGRPLRVLDACAAPGGKTAHLIERAVPGSIEVTALEIDPERARRIDETLSRLGL 316 Query: 289 YA-EDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 A + + A + + FDA+L+DAPC+++G +RR PDV W R D+ + A Sbjct: 317 KAKVLVADASAPKDWFESQCGAQPFDAILLDAPCTASGIVRRQPDVRWLRRESDVAQLAD 376 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +LL ++PGG +V+ CS+ K + + +Q L + L Sbjct: 377 IQSRLLDTLWPLLQPGGRMVYCTCSVFKAEGDAQMQAFLARNTTAASLPAPGHLIPGKAA 436 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++S DGFF L +L Sbjct: 437 KHDSVSDN---------------PLGDHDGFFYALLEKL 460 >gi|316967738|gb|EFV52125.1| putative RNA methyltransferase NOL1 [Trichinella spiralis] Length = 472 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 141/338 (41%), Gaps = 30/338 (8%) Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 N+ L+ S +L + + E+ E+L + + +L A S + + Sbjct: 110 TNASLKSRSYYVQKLKKYLCSFYGYNEFIMEKLIHIFKINELLEFLQANESQRPLVIRCN 169 Query: 184 F---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASI 232 + A L + + + I + P + G + +Q AS+ + Sbjct: 170 TLKIRRKDLAQSLTSRGVNLQPLGKWSKVGLVVYGSQVPIGATPEYMCGFYILQGASSFM 229 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 PV + +LDLCAAPGGK++ ++ + + A DVS+ R + + N RL + Sbjct: 230 PVLALDPQEDEKILDLCAAPGGKSSYISAMMKNTGILIANDVSRDRCKAITSNFHRLGVR 289 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + +D + FD VL+DAPCS +G I + V +++ DI + A Q++L+L Sbjct: 290 NAMVTCLDGRHFKQIL-FDRVLLDAPCSGSGVISKDVSVKVSKNLLDIQRCATLQKELIL 348 Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSID 402 I + G I+V+S CS+ +++E V+ LR + + L + + + Sbjct: 349 AAIDRLDARSPKGSILVYSTCSIFVEENEAVIDYALRKRNVKLVDTGLPFGIEGFVRFRE 408 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + R P MDGFF L++ Sbjct: 409 YRFHPTMKYCRRFYPH--------KHNMDGFFVAKLKK 438 >gi|330790279|ref|XP_003283225.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum] gi|325086906|gb|EGC40289.1| hypothetical protein DICPUDRAFT_146818 [Dictyostelium purpureum] Length = 672 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 79/331 (23%), Positives = 136/331 (41%), Gaps = 27/331 (8%) Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 L + I W + + L +A + + + Sbjct: 237 SRQVYMDRLKEDICTYFGYSSWLVDVFLKIFNAAEALEFFEANETHRPLTIRANTLKTRR 296 Query: 187 ETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + A L A + I+ + + +I + P + G + Q AS+ +PV Sbjct: 297 KDLAEALIARGVHLEPIKWSQVGLTIYDTQVAIGATPEYLAGQYIQQSASSFLPVLALAP 356 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 N VLD+CA+PGGKT ++ + + A DV+K R++ L N+ RL + + M Sbjct: 357 QPNERVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKERIKSLVANIHRLGVKNCVVSNM 416 Query: 297 DAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D +Y FD VLVDAPC G I + P + ++ D++ Q++LLL+ I V Sbjct: 417 DGREYPSVLAGFDRVLVDAPCVGLGVISKDPQIKISKSEQDVITCTHTQKELLLRAIDAV 476 Query: 356 ----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 GGI+V+S CSL +++E VV LR+ + + + + Sbjct: 477 DANSATGGIIVYSTCSLTVEENEAVVDYALRNRDVIIVDTTIEFGVDGFTSFRES----- 531 Query: 412 WIRITPD--MLEKIDGVSSGMDGFFAVALRR 440 R P + ++ + MDGF+ L++ Sbjct: 532 --RFHPSLALTKRYYPHTHNMDGFYVAKLKK 560 >gi|126340043|ref|XP_001369382.1| PREDICTED: similar to nucleolar protein 1, 120kDa [Monodelphis domestica] Length = 727 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ ++ + + ++ +A P I L A L + Sbjct: 281 ATYYSYGDFLIGKIMDIFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVN 340 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV + +LD+C A Sbjct: 341 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYILQGASSMLPVIALAPQEHERILDMCCA 400 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + RL+ + NL RL + I D + F Sbjct: 401 PGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHDDGRHFPKVVGGF 460 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V +D DI + A Q++LLL I V K GG +V+ Sbjct: 461 DRVLLDAPCSGTGVISKDPSVKTNKDDKDIKRCAHIQKELLLSAIDSVNAASKTGGYIVY 520 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV+ L+ V LVP + + + R P + Sbjct: 521 CTCSITVEENEWVVEYALKKR--NVRLVPTGLDFGQ-----EGFTHFRERRFHPTLRSTR 573 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF ++ Sbjct: 574 RFYPHTHNMDGFFIAKFKK 592 >gi|319761189|ref|YP_004125126.1| sun protein [Alicycliphilus denitrificans BC] gi|330823049|ref|YP_004386352.1| sun protein [Alicycliphilus denitrificans K601] gi|317115750|gb|ADU98238.1| sun protein [Alicycliphilus denitrificans BC] gi|329308421|gb|AEB82836.1| sun protein [Alicycliphilus denitrificans K601] Length = 455 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 118/461 (25%), Positives = 189/461 (40%), Gaps = 44/461 (9%) Query: 10 VSSHLLSCVMRKRISLTCLLDL-EYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +S LS ++ S + + G +A + V+A++ LR L R A+ Sbjct: 11 AASAALSRLLDATASALQAIRAGQSGTAALAATDAALRPAVQALLFQVLRNLGRAQALRR 70 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + P + +L + + +V+ AVE AKR A +N+ L Sbjct: 71 LLAPRKPPPRVDALLCTALALAWEPESAPYEPFTLVNQAVEAAKRSPARHGSAAFINACL 130 Query: 129 RRVSREKI----ELLQRIAGISIIPEWFKERLE-NFYGKERVLAISDACISPLYIDLTVK 183 RR RE+ + P W+ +RL + + + ++ +P+ + + + Sbjct: 131 RRFLREREGLVAATQGDETAVWNHPAWWIQRLRRDHPQCWQQILQANNAPAPMVLRVARQ 190 Query: 184 FDIETWAHKLNAVMLPT-----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--- 235 K A + G + P + LPGF EGV VQDA+A + Sbjct: 191 KSTSALYQKALAAINIESTAVGGWGVVLARPVPVQRLPGFDEGVVSVQDAAAQMAAPLLL 250 Query: 236 -LFGTLNNLSVLDLCAAPGGKTAQLIVSG------AKVTALDVSKRRLEKLRCNLDRLHL 288 +L +LD CAAPGGKTA L+ +VTAL+V R E++ NL RL L Sbjct: 251 DGLDAGKSLRLLDACAAPGGKTAHLLEWAAALQAPWQVTALEVDVVRAERIHDNLRRLGL 310 Query: 289 YAEDIIEMD-------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 A ++ D + FDA+L+DAPC+++G +RRHPDV W R D+ + A Sbjct: 311 SA-QVLVADAGRPEAWWQQASGGEPFDAILLDAPCTASGIVRRHPDVRWLRRESDVAQLA 369 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL +KPGG +++ CS+ + + + +Q L + L + S Sbjct: 370 ALQARLLAALWPLLKPGGRMLYCTCSVFRAEGDAQIQAFLAHNTDARLLPSAGHLFPGSP 429 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 D AL G DGFF L++ Sbjct: 430 DKHGALRDNG---------------PGEHDGFFYALLQKAA 455 >gi|167540287|ref|XP_001741734.1| hypothetical protein [Entamoeba dispar SAW760] gi|165893617|gb|EDR21802.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 505 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 25/320 (7%) Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKL--- 193 Q + E+ + + + +G + + +A +P + + V A KL Sbjct: 186 QDMQTYYSCNEFLAKLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQKLINR 245 Query: 194 ----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + G+ + + I + P + G + +Q +S+ + V N +LD+C Sbjct: 246 GVNVDMIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNEKILDMC 305 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KK 305 AAPGGKT + + + A D+SK RL+ + N+ RL + I D ++ Sbjct: 306 AAPGGKTTHIAALMKDTGILVANDISKDRLKAVIGNVHRLGITNTIITNYDGHEFPKVMG 365 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIV 361 FD VLVDAPC+ G I R V ++ DI Q++L+L I V P GG V Sbjct: 366 QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYV 425 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--M 419 V+S CS+ +++E V+ L+ + V + L + + R P M Sbjct: 426 VYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ-----YRFHPSVKM 480 Query: 420 LEKIDGVSSGMDGFFAVALR 439 ++ MDGFF L+ Sbjct: 481 AKRFFPHIQNMDGFFVCKLK 500 >gi|108763815|ref|YP_630153.1| RsmB/NOP family methyltransferase [Myxococcus xanthus DK 1622] gi|108467695|gb|ABF92880.1| methyltransferase, RsmB/NOP family [Myxococcus xanthus DK 1622] Length = 427 Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 92/446 (20%), Positives = 164/446 (36%), Gaps = 62/446 (13%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 V++ ++ V+ + +LD D L++ ++ ++ V + R+ +L Sbjct: 30 VAADAIAQVLA-GSAAERVLDRTLRDRR--SLTREQRLALKEAVFNVGLWRRRLGFLLGR 86 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + L L L +A V + A Sbjct: 87 EDAAPL-----FLLHALMHGLA-----GVPAV----ESAALAGLGDG------------- 119 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDI 186 +A + +P+W + +G E P I L Sbjct: 120 APPPLVSAPPPTLALRASLPDWLADHFAREFGPE-ADDFCAHLNVPGPITLRANVLRTSR 178 Query: 187 ETWAHKLNAVM-------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E A +L + + ++ ++ L EG++ VQD + + L Sbjct: 179 EALAERLRSEGVETRPGPWSPLALHIEGPRPNLYGLRSLQEGLFEVQDEGSQLLGLLVEA 238 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +VLDLCA GGKT Q + ++ A D RL++L R HL ++ Sbjct: 239 RPGETVLDLCAGAGGKTLQLGADMKDSGRLLAYDPDPERLDRLLQRSSRAHLTRVQVL-- 296 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS G++RR PD + + + + Q+ +L +G V+ Sbjct: 297 --RSLPESLDADRVLVDAPCSELGSLRRGPDQRFRIQPEVLTRFPALQQDILQRGARLVR 354 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V++ C++++ ++E+VV L S P + P + ++ A +G++ + Sbjct: 355 PGGRLVYATCTVNRAENEDVVAAFLASRPDFRLVRP------GAGWLSDACLRDGFLFVA 408 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P G D FFA L R Sbjct: 409 PH--------RHGTDAFFAAVLERTA 426 >gi|291235462|ref|XP_002737664.1| PREDICTED: NOP2 protein-like [Saccoglossus kowalevskii] Length = 628 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 30/321 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ ++ + ++ +A I + A L + Sbjct: 278 ASYYSYNDYLIGKIVELFAITELIEFLEANEVQRPITIRTNTLKTRRRDLAQALINRGVN 337 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV N +LD+CAA Sbjct: 338 LDPVGKWSKVGLVIYESSVPIGATPEYLAGHYMMQGASSFLPVMALAPQENERILDMCAA 397 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT+ + + + + A D +K R++ + N+ R+ + I D + F Sbjct: 398 PGGKTSYIASLMKNTGMLFANDANKERVKSIVGNIHRMGITNTVICNEDGRSFPKVIGNF 457 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TG I + P V +D D+ + Q++LLL I V K GG +V+ Sbjct: 458 DRVLLDAPCTGTGVISKDPSVKTNKDMLDVQRIVTIQKELLLSAIDSVDAKSKTGGYIVY 517 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 S CS+ ++E V+ L+ + + L + + + + E R P Sbjct: 518 STCSILVDENEWVIDYALKKRNVKLVSAGLDFGRPGFKRFRERRFHPTLEKTRRFYPH-- 575 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + MDGFF L+++ Sbjct: 576 ------THNMDGFFVAKLKKM 590 >gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium damselae subsp. damselae CIP 102761] gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium damselae subsp. damselae CIP 102761] Length = 308 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 83/312 (26%), Positives = 136/312 (43%), Gaps = 34/312 (10%) Query: 141 RIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML 198 AG P W + L+ Y + + ++ +P+++ + + + + L+A + Sbjct: 18 HDAGKYGHPSWLLKLLKQAYPNDVDAICAANNTKAPMWLRVNRQHHNRDEYRKLLDAEGI 77 Query: 199 PTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 T P + LPGF +G VQDA+A + ++ +LD CAAP Sbjct: 78 ATELHPQAGDALRLLSPCDVYKLPGFEQGWVSVQDAAAQLAIEYLQPQAGELILDCCAAP 137 Query: 253 GGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFD 308 GGKTA V A+V A+D + RL ++ NL RL+L A + FD Sbjct: 138 GGKTAHILEHVPSAQVVAIDCDEHRLARVHDNLQRLNLQAKVLCADARYPEKWWDGDKFD 197 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+DAPCS+TG IRRHPD+ W R +DI A Q ++ +K GG +V++ CS+ Sbjct: 198 RILLDAPCSATGVIRRHPDIKWLRRGEDIAALAQLQAEIFDAMWLQLKSGGTLVYATCSI 257 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 Q++ + V L + + + + +I P Sbjct: 258 TPQENRDQVSAFLTRTADA--------------TLVGSEATNPGRQILPG--------EE 295 Query: 429 GMDGFFAVALRR 440 MDGF+ L++ Sbjct: 296 NMDGFYYAVLQK 307 >gi|224061242|ref|XP_002300386.1| predicted protein [Populus trichocarpa] gi|222847644|gb|EEE85191.1| predicted protein [Populus trichocarpa] Length = 476 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 130/338 (38%), Gaps = 30/338 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 +L + E+ L + ++ + +A P L Sbjct: 52 EGSSRKDYVHQLKIDLCKYYGYNEFLIGALVEMFPVNELMELIEAFEKPRPTCLRTNTLK 111 Query: 185 -DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQ 235 A+ L + + I + P + G + +Q AS+ +PV Sbjct: 112 TRRRDLANVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGHYMLQSASSFMPVM 171 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 ++D+ AAPGGKT + + + + A ++ +RL L NL R+ + Sbjct: 172 ALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIYANEIKAQRLRSLTANLHRMGVTNTI 231 Query: 293 IIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D + D VL+DAPCS TG I + V ++ ++DI + A Q++LLL Sbjct: 232 VCNYDGRELPKTLGLNTVDRVLLDAPCSGTGVISKDESVKISKTSEDIEQCAHLQKQLLL 291 Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 I V K GG +V+S CS+ ++E V L+ V+LVP + + + Sbjct: 292 AAIDMVDANSKSGGYIVYSTCSIMVAENEAAVDYALKKR--NVKLVPCGLDFGRPGFVRF 349 Query: 406 ALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRL 441 R P + + MDGFF L++L Sbjct: 350 RQH-----RFHPSLEKTRRFYPHVHNMDGFFVAKLKKL 382 >gi|221201862|ref|ZP_03574899.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2M] gi|221207632|ref|ZP_03580640.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2] gi|221172478|gb|EEE04917.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2] gi|221178282|gb|EEE10692.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD2M] Length = 467 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 102/476 (21%), Positives = 176/476 (36%), Gaps = 57/476 (11%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 G ARL + + L +R+ +L L + A + + Sbjct: 11 SPGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 69 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLP--------RKKYSLQQLLRVSVAQILYLDVA 99 + + T+R L +D ++ ++ + P L + Sbjct: 70 ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAGALALLLDADGEAAY-------P 122 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155 + VVD AV +E +VN++LRR RE+ + W+ + Sbjct: 123 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 182 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208 ++ + ++ + L V + L Sbjct: 183 VKRAWPDAWQAILAAGDRQGP-LTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLAS 241 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267 + +PGFA+GV VQDA A + + G + + VLD CAAPGGKT ++ + A+V Sbjct: 242 ALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVV 301 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324 AL+ R ++ NL RL L A D+ D + + FD +L D PCS++G +RR Sbjct: 302 ALESDASRATRIGENLARLSL-AADVRVGDAGAPDTWYDGRPFDRILADVPCSASGIVRR 360 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 HPD+ W R DI QR++L +K GG +++ CS+ ++ E+ + + Sbjct: 361 HPDIRWLRREADIPALVAEQRRILSALWPLLKQGGELLYVTCSIFPEEGEQQARWFEAAC 420 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L + EG + ++ DGFF ++ Sbjct: 421 EDAVRLDA--PGQLLPRAASGGAGSEGT--------AGVPDPTTDHDGFFYARFQK 466 >gi|241765995|ref|ZP_04763917.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN] gi|241364022|gb|EER59271.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN] Length = 404 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 106/418 (25%), Positives = 172/418 (41%), Gaps = 42/418 (10%) Query: 50 RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109 ++++ LR L R A+ ++ + P +L + +V+ AVE Sbjct: 2 QSLLFHVLRALGRAQALRRKLVSRTPPPPADALLCTALALAWHADDAPYEPFTLVNQAVE 61 Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERV 165 AKR+ + A +N+ LRR RE+ P+W+ +L+ + + Sbjct: 62 AAKRNVATKAQAPFINACLRRFLRERDTLVAATDTDPVARWNHPQWWIAKLQKDHPQHWQ 121 Query: 166 LAISDAC-ISPLYIDLT-----VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + +P+ + + V + A + P + LPGFA Sbjct: 122 QILHANNGRAPMILRVNGQKSTVAQYQKALAAINIEATPVGEWGLALQHPRPVAELPGFA 181 Query: 220 EGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----KVTALD 270 +G+ VQDA+A L VLD CAAPGGKTA L+ +VTAL+ Sbjct: 182 QGLVSVQDAAAQQAAPLLLRGLDLAQPLRVLDACAAPGGKTAHLLEYAGASSPLQVTALE 241 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD-------AFDYCPKKLFDAVLVDAPCSSTGTIR 323 V R ++ LDRL L A ++ D +C FDA+L+DAPC+++G +R Sbjct: 242 VDVARSVRIHETLDRLGLRA-QVLVADAARPQEWWQPHCEGIPFDAILLDAPCTASGIVR 300 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 RHPDV W R DI + A Q +LL ++PGG +++ CS+ +++ + VQ L Sbjct: 301 RHPDVRWLRREADIAQLAVQQARLLKALWPLLRPGGRLLYCTCSVFREEGDAQVQSFLA- 359 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+P I + + DGFF L+++ Sbjct: 360 HNTDARLLPSPGHLIPGIANNGEVVRDN--------------APGDHDGFFYALLQKM 403 >gi|291288639|ref|YP_003505455.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885799|gb|ADD69499.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 379 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 104/402 (25%), Positives = 172/402 (42%), Gaps = 54/402 (13%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100 +Q L R I T R L I+ LD + L+ L + QIL++D + D Sbjct: 28 DSAEQRLYRKIYFETFRHLGFIEKCLDKLYTEMP---GPELRAALALGTCQILFMDDIPD 84 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160 YA V+ +V + +K VN++LR V R K E L PEWF +R E Sbjct: 85 YAAVNESVILVQMNKR-----SFVNAVLRNVGRRKEEFLSEYNVREDFPEWFVKRWETKL 139 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 G E + ++D P + + + Sbjct: 140 GDELDVFLTDLNQKPSFYGVDTDTMKIDKLEE--------------------------KS 173 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278 ++ D ++ +L G +S+LD CAAPGGKT A++ A++ +R EK Sbjct: 174 DDHYIMDRASYSVAKLAGECLPMSILDCCAAPGGKTFVLAKTYPDARIFAVEKYYKRFEK 233 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 L+ N+ L L D I+ D F+ + FD +++DAPCS+ GTI+RHP+V W R+ DI Sbjct: 234 LKENMTELGLGNVDCIKNDIFEMETEAEFDLIMLDAPCSALGTIKRHPEVRWFRNEKDIK 293 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 ++A Q +L + F+ GG +++S CS++ +++ +V+++ + + P + Sbjct: 294 ENARRQFGILKKVSKFLSKGGKIIYSVCSMEDEETVDVIKEFMEWDSSFKLVTPSCDEDF 353 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K D + + DGFF L + Sbjct: 354 KDGD-----------------FFRSLPYKNDADGFFGAVLTK 378 >gi|218662910|ref|ZP_03518840.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli IE4771] Length = 429 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 84/449 (18%), Positives = 151/449 (33%), Gaps = 48/449 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR +++ Sbjct: 10 AISVLADIDTRKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMND- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ A +++ +++ Sbjct: 67 -----DSAAAIAHAVM-------------FRQWGFTPDRLATELADDKFAPPPLSADALA 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + IPEW + E +G + A + +DL + Sbjct: 109 AFASRSLDDAPPHIRGDIPEWIQPSFEQAFGAAWLTEA-QALAARPTLDLRANILKASRD 167 Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237 + A+ ++ + F +G + VQD + I L Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + +LD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + D VLVDAPC+ TGT RR PD W ++ + Q+ L Q F Sbjct: 288 DDARGLSGLAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPEGW 412 VKPGG +++ CS+ Q++EE V++ + V +P A + S Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFTAGNTDFQIVSALPAWDALFGKEAPRPHSSDAQT 407 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +TP S+ DGFF ++R Sbjct: 408 VTLTP--------ASTDTDGFFFCRMQRK 428 >gi|254780634|ref|YP_003065047.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040311|gb|ACT57107.1| NOL1/NOP2/SUN family signature protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 160/450 (35%), Gaps = 48/450 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L + + +T L F D+ + IV+ LR ++D Sbjct: 8 AAAIEILKDIRTHKKPITNSLKDWGMSHRFAG--SSDRASISNIVHDVLRKYLSSAYIMD 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + ++ + D+ ++ + E + L + Sbjct: 66 S------DDPESLVYAVI------MKDWDIPWEKMLSMLKE-------DLFSPPLPKESV 106 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + + IP+W + Y K+ L + + +DL Sbjct: 107 IKSFHSRQLENAPLHIQGNIPQWLQSSF-QSYFKDTWLKEAKSLSMRAPLDLRTNTLKVN 165 Query: 189 WAHKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQ 235 + ++++ F G + +QD + I Sbjct: 166 RCKLFKNLCHYGVHHSSISRFGLRIPATKGKSRLPNVMNDITFQRGWFEIQDEGSQIVSN 225 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L N+ +LD CA GGKT + L+ + ++ A D +K R+ + + R ++ Sbjct: 226 LTAITNSSQILDFCAGGGGKTLALSMLLNNKGQIHAWDNNKSRMAPIVARIKRAGIHNVQ 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + ++ F VLVDAPCS TGT RR PD+ W ++++ Q+K+L + Sbjct: 286 LHSSWESLRNLQEHFTTVLVDAPCSGTGTWRRRPDIKWRLSQKNLIERTEEQKKILEESA 345 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPE 410 FV+P G +V+ CS+ +++ + + L +P ++ + + + Sbjct: 346 QFVRPEGYLVYITCSILPEENIQQINYFLSKNPHFSIDSIIDDWNQLYDLKNHPSLFIEN 405 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +TP + DGFF L+R Sbjct: 406 GCCVLTP--------FLTNTDGFFFCRLKR 427 >gi|257784669|ref|YP_003179886.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469] gi|257473176|gb|ACV51295.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469] Length = 463 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 93/480 (19%), Positives = 178/480 (37%), Gaps = 56/480 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-FRLLSQRDQILVRAIVNVTLRF 59 M + AR V+ R + +S F LS +D+ + Sbjct: 1 MATLTPARKVAYQAFFECRRN----NLCVRDYLRESKDFSELSAQDKAFATRLALGATLT 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D L L S + + +Q R++V ++LYL+ A + VE K ++ Sbjct: 57 KGKLDEALKNHLKSGIH-LEPKVQDAFRIAVFEVLYLETRRDAAISQGVELVKSV--SKR 113 Query: 120 FAKLVNSILRRVSRE--------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + L N++LR++S ++ S IPEW + GK + Sbjct: 114 SSGLANAVLRKISEHEANLARAKDPHTPSELSWASGIPEWICLEIIESLGKSAAQRLILN 173 Query: 172 CISPLYIDLTVKFDIETWAH----KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 +P + + + E +L +LP ++ + + D Sbjct: 174 LKNPAPVYVLQRNLSEQQLQNGSLELQKTLLPDVYEVKNPAQLNVGA--YVKKVQLVPAD 231 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKVTALDV----SKRRL 276 ++ + L + + ++L++ G K L +TA+++ S Sbjct: 232 LASQLVAFLAASYVHQNILEIGQGRGTKSLLLSHAFEVLDKKNTYITAVELLKGKSHISK 291 Query: 277 EKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 +++ R + + + FD V +DAPCS GT+RRHP++ W Sbjct: 292 RRMKAAGLRDQVTSLMFDATQFASPEIPEELNQNFDVVFIDAPCSGLGTLRRHPEIAWNL 351 Query: 333 DT---DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PV 388 D + Q KLL S V+ GG ++++ CSL ++++VV+ L SS Sbjct: 352 SANSLYDGGELTVLQTKLLRSCSSRVEVGGYLIYATCSLSNSENQQVVEDFLASSEGFDF 411 Query: 389 ELVPLNSAYWKSIDMAMA-------LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E+ L+ ++ + A ++PEG+++ S+ D F +R Sbjct: 412 EVQDLHECPARTNLIPEAQEFLDTCITPEGFLQT--------AFASADCDAHFMAVFKRK 463 >gi|121609061|ref|YP_996868.1| Fmu (Sun) domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121553701|gb|ABM57850.1| Fmu (Sun) domain protein [Verminephrobacter eiseniae EF01-2] Length = 423 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 95/451 (21%), Positives = 142/451 (31%), Gaps = 57/451 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L+ +R ++ + D L R++ + V LR + + Sbjct: 9 ACAELVRLTLRLEHPADAVVSRFFRDHR--GLGPRERATLAETVYTVLRKKLLFEHMA-- 64 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + L + A Sbjct: 65 -----PSGSGSRERCLAILG--------------------FAGTRDFLHGALTGQEKDWL 99 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENF-YGKERVLAISDACISPLYIDLTVKFDIET 188 +PEW L+ L S A +PL + + D Sbjct: 100 AQCDAVRPEDLPERHRHHLPEWLVPPLKAQLGAGFWPLVASLAQAAPLDLRVNTLKDKRA 159 Query: 189 WAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 K A + + ++ L F G VQD + + L Sbjct: 160 VVQKELAQAGIQARATPYSPWGLRIDGKPALARLEVFTRGAIEVQDEGSQLLALLLDAKR 219 Query: 242 NLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----II 294 VLDLCA GGK + S ++ A DVS RL+ L+ L R L Sbjct: 220 GEMVLDLCAGAGGKTLAIGACMRSTGRLYAFDVSAHRLDALKPRLARSGLSNVHPAAIAH 279 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E D D VLVDAPCS GT+RR+PD+ W + + + A Q +L Sbjct: 280 ERDERIGRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSDRTVQELAARQSAILHSAARL 339 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG--- 411 KPGG +V++ CSL Q++E V + P L + A L G Sbjct: 340 PKPGGRLVYATCSLLAQENEAVAAAFGAAHPDFEPLDAGALLERLKVAGAKGLCSGGASG 399 Query: 412 --WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++R+ P + DGFFA RR Sbjct: 400 SAYLRLWPHL--------HQTDGFFAAIWRR 422 >gi|238028941|ref|YP_002913172.1| Sun protein [Burkholderia glumae BGR1] gi|237878135|gb|ACR30468.1| Sun protein [Burkholderia glumae BGR1] Length = 483 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 98/413 (23%), Positives = 166/413 (40%), Gaps = 33/413 (7%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV----SVAQILYLDVADY 101 + ++ I T+R L D ++ ++ + P +L + A+ Y + Sbjct: 85 RGAIQDIAYRTMRRLGTSDWLIGTLVGKAPPEHVRALLACAFALLVDAPAEAAYT---PF 141 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLE 157 VVD V +E LVN++LRR RE+ + W+ E LE Sbjct: 142 TVVDQTVSAIGARREFAFAKGLVNAVLRRFLRERETLVAQAQADRVARWNYRPWWIEALE 201 Query: 158 NFYGKERVLAISDACISPL-YIDLT-----VKFDIETWAHKLNAVMLPTGGIRLKELPES 211 + + ++ ++ + + V + T + P Sbjct: 202 RAWPDDWQAILAAGDLAGPLTLRVNARQASVAAYLATLREQGIDAAAAGRYAVRLAAPLP 261 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALD 270 + +PGFA+G+ VQDA A + + G + + VLD CAAPGGKT L+ + +V AL+ Sbjct: 262 VERIPGFADGMVSVQDAGAQLAAEWLGATDGMRVLDACAAPGGKTGHLLELADLEVVALE 321 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 R ++ NL RL L A ++ D + + FD +L D PCS++G +RRHPD Sbjct: 322 SDASRATRIGENLARLKL-AAEVRVGDAGAPEGWHDGRPFDRILADVPCSASGIVRRHPD 380 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W R DI QR++L +KPGG +++ CS+ ++ E + + Sbjct: 381 IRWLRRETDIAALVAEQRRILQALWPLLKPGGELLYVTCSVFPEEGEAQARWFEGAVQDA 440 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L ++ + P E DGFF ++ Sbjct: 441 VRLDAPGQLLPRAAAGRLP---------YPGHDEAARQADH--DGFFYARFQK 482 >gi|162456172|ref|YP_001618539.1| Sun protein [Sorangium cellulosum 'So ce 56'] gi|161166754|emb|CAN98059.1| Sun protein [Sorangium cellulosum 'So ce 56'] Length = 496 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 99/475 (20%), Positives = 161/475 (33%), Gaps = 59/475 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 V++ +L+ V + LD E + L RD L +V LR ++A + Sbjct: 33 VAARVLARVWGSDAFASAALDAELRRAP--ALDPRDIGLATELVYGVLRAQAALEARIAE 90 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR--HFAKLVNS 126 S ++ + + + +LD V +A V AV+ A+ R FA V Sbjct: 91 FAAKSRWTADPLVRAHVLMGAYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLR 150 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKF 184 L A ++ P W + L G+ A A P + L Sbjct: 151 RLAAAVESGGRPPLASAVVASAPGWLRGALRRSLGRAAAEAFLSAGPVPPPTGLCLAPGE 210 Query: 185 DIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 D W L A + + + LPGF Q+ A Sbjct: 211 DRGAWLEALRAAAPTATFEAGHVSPAAIVARGAGDLRRLPGFGAAWI-GQEEGAQALAFA 269 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNL------------- 283 G +VLD C+ G K+ L + A+D + KL Sbjct: 270 LGARPGEAVLDACSGRGNKSWLLSRAVLPSGAVDAADLYPAKLSQLRAALGAPPASAEGA 329 Query: 284 ---------------DRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326 R + +D +D VLVDAPCS GT+RR P Sbjct: 330 GAEAGDAQAGARDGLGRAAASVRETYAVDWTVGAGDVPEGYDRVLVDAPCSGVGTLRRRP 389 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 ++ R+ DD+ + A Q + + + + GG +VF+ CS+ +++ E V ++ + Sbjct: 390 EIALRREADDLPRLADLQVAIARRAATRARDGGRLVFAVCSVLREECEAVAARLAAPADD 449 Query: 387 P--VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 V L P + ++A R+ P + G DG+FA Sbjct: 450 DLGVRLEPAPFDAELARELAGGGDA---FRLLPHV--------HGTDGYFAAMFV 493 >gi|114562387|ref|YP_749900.1| Fmu (Sun) domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333680|gb|ABI71062.1| Fmu (Sun) domain protein [Shewanella frigidimarina NCIMB 400] Length = 458 Score = 160 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 158/456 (34%), Gaps = 62/456 (13%) Query: 12 SHLLS-CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L VM + ++ + + +D+ ++R + R+ ++ + Sbjct: 39 IETLFNQVMSTNMPADRIIGQYFREHKKHG--SKDRRVIRESLFGLFRWWGWLNQL---- 92 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL------- 123 +S + QQL ++ + + A + + + Sbjct: 93 --NSSQKHTTWFQQLSTCAMLEQ-----------HEWNDVATAWNDFASWPQTRPDQVEL 139 Query: 124 -VNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N+ L + + ++P+WF + + + + + P++ Sbjct: 140 INNASLNDKLTAFMTVSGIDTCQLTQLLPQWFWQLCPIDDVDQYAVVNAMSSRPPIWARA 199 Query: 181 T------VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 V + + A + I L ++ + + +G +QD ++ + Sbjct: 200 QTLSTEKVIKSLGQAGIEAKANSYFSDAINLGHKSINLNEVNVYKQGYLEIQDLASQVIG 259 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRL 286 Q+ N+ D C+ GGKT QL + A D+ + LE+LR R Sbjct: 260 QICQPNNHDKWWDACSGAGGKTLQLYSLMLQQGSALTGSIIASDIRTKPLEELRKRAKRA 319 Query: 287 HLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + FD VLVDAPCS TGT RR+PD+ W D + Q Sbjct: 320 GFDNISVAPWKGDVLPVDANAFDGVLVDAPCSCTGTWRRNPDMRWLDDASAVTDKPMLQL 379 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L + VK GG +V++ CSL ++E++V+ L + EL P+ + + Sbjct: 380 AILRRSAVAVKSGGKLVYATCSLSPSENEQIVKDFLSET-AEFELEPVTHPFTGQLCD-- 436 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I P DG F +RR Sbjct: 437 ------MLTIWPQQA--------NSDGMFVAKMRRK 458 >gi|115668627|ref|XP_787141.2| PREDICTED: similar to Im:6893299 protein [Strongylocentrotus purpuratus] gi|115941222|ref|XP_001192218.1| PREDICTED: similar to Im:6893299 protein [Strongylocentrotus purpuratus] Length = 1076 Score = 160 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 82/404 (20%), Positives = 154/404 (38%), Gaps = 37/404 (9%) Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN-- 125 L + R K + L++S++Q + ++ + ++ +++ Sbjct: 468 SKKLDKKIKRDKKLAEDELQISISQTETFQLPSGEEIEKEDILLQHHMVHQRIKEVMEVL 527 Query: 126 -------SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 R L Q + E+ ++ + + ++ +A + Sbjct: 528 GDFKNRREEDRSRQEYVTMLRQDLMTYYSYNEFLITKIMDLFPLSELIEFLEANEVARPV 587 Query: 179 DLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQD 227 + A L + + + + P + G + +Q Sbjct: 588 TIRTNSLKTRRRDLAQALINRGVNLDPVGKWTKVGLVIYDSAVPVGATPEYMAGHYVLQG 647 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 AS+ +PV +LD+CA+PG KT + + + + A D +K+R+ L NL Sbjct: 648 ASSFLPVMALAPHEGEKILDMCASPGSKTTYIAALMKNTGMLFANDANKKRVSALVGNLH 707 Query: 285 RLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 R + I D + FD VL+DAPCS TG I + V ++D DI + + Sbjct: 708 RCGITNTVICNEDGKSFPKVMGGFDRVLLDAPCSGTGVIAKDTAVKLSKDEGDIQRCSHL 767 Query: 344 QRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q++L+L I + K GG +V+S CS+ +++E VV L+ V LVP + + Sbjct: 768 QKELILAAIDSIDANSKTGGYLVYSTCSIMVEENEWVVDYALKKR--NVRLVPTGIDFGQ 825 Query: 400 SIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 S P + +I + MDGF+ L++L Sbjct: 826 -----DGFSRFKARHFHPSLKLSRRIYPHTHNMDGFYFAKLKKL 864 >gi|67479223|ref|XP_654993.1| Proliferating-cell nucleolar antigen p120 [Entamoeba histolytica HM-1:IMSS] gi|56472094|gb|EAL49607.1| Proliferating-cell nucleolar antigen p120, putative [Entamoeba histolytica HM-1:IMSS] Length = 495 Score = 160 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 135/320 (42%), Gaps = 25/320 (7%) Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKL--- 193 Q + E+ + + +G + + +A +P + + V A KL Sbjct: 176 QDMQTYYSCNEFLATLVVDLFGPKGAVDFMEANEAPRPVTIRVNTLKSRRRELAQKLINR 235 Query: 194 ----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + G+ + + I + P + G + +Q +S+ + V N +LD+C Sbjct: 236 GVNVDMIEWSKSGLVVYDSQVPIGATPEYLAGQYILQSSSSWVSVIALAPQPNEKILDMC 295 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KK 305 AAPGGKT + + + A D+SK RL+ + N+ RL + I D ++ Sbjct: 296 AAPGGKTTHIAALMKDTGVLVANDISKDRLKAVIGNVHRLGITNTIITNCDGHEFPKVMG 355 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIV 361 FD VLVDAPC+ G I R V ++ DI Q++L+L I V P GG V Sbjct: 356 QFDRVLVDAPCTGLGIISRDAAVKLSKSEQDIKDCTRIQKELILHAIDSVNPKSKTGGYV 415 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--M 419 V+S CS+ +++E V+ L+ + V + L + + R P M Sbjct: 416 VYSTCSITVEENEAVIDYALKKRNVKVVPIALQDGVGEDGYVNHRQ-----YRFHPSVKM 470 Query: 420 LEKIDGVSSGMDGFFAVALR 439 ++ MDGFF L+ Sbjct: 471 AKRFFPHIQNMDGFFVCKLK 490 >gi|170585061|ref|XP_001897306.1| NOL1/NOP2/sun family putative RNA methylase containing protein [Brugia malayi] gi|158595285|gb|EDP33851.1| NOL1/NOP2/sun family putative RNA methylase containing protein [Brugia malayi] Length = 739 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 130/326 (39%), Gaps = 30/326 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 E+ ++ + + L + ++T +L ++ G Sbjct: 288 CSYYGYNEYLIQKFMSIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGM 347 Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + + + P + G + +Q S+ +PV ++LD+C+ Sbjct: 348 NVDPAAEWTKIGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPRPEETILDVCS 407 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306 APGGK++ + + + + A D + +R + NL RL + + +D ++ Sbjct: 408 APGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREFAKIMPQ 467 Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIV 361 FD VL+DAPCS TG I + V RD+ D+ + QR+L+L + + K GG + Sbjct: 468 GFDRVLLDAPCSGTGVIWKDGSVKTRRDSQDVQRCHTLQRELILAALDSINANSKTGGYL 527 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DM 419 V+S CS+ +++E VV LR + + L+ + R P + Sbjct: 528 VYSTCSVLVEENEAVVDYALRKRDCKLVPMGLDVGV-------QGFTKFREYRFHPSLCL 580 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445 + +DGFF ++L K Sbjct: 581 TRRYYPHVHNIDGFFVAKFKKLSNSK 606 >gi|120537962|gb|AAI29564.1| LOC100036868 protein [Xenopus laevis] Length = 744 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ E L + + ++ +AC I + A L Sbjct: 301 ATYYSYGDYMIETLSDLFPVSELVDFLEACEVHRPITIRTNTLKTRRRDLAQALINRSVN 360 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV N VLD+C A Sbjct: 361 LDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCA 420 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT+ + + + V A D++ RL + NL RL + I D F Sbjct: 421 PGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQISKILGGF 480 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V + DI + A Q++L+L I + + GG +V+ Sbjct: 481 DRVLLDAPCSGTGIISKDPAVKTNKSVQDIQRCAHIQKELVLSAIDALDAQSQTGGFLVY 540 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V+LVP + K R P + Sbjct: 541 CTCSITVEENECVVDYALKKR--NVKLVPTGLDFGK-----EGFVRFKERRFHPSLRQTR 593 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF LR+ Sbjct: 594 RFYPHTHNMDGFFIAKLRK 612 >gi|115528363|gb|AAI24994.1| LOC100036868 protein [Xenopus laevis] Length = 729 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ E L + + ++ +AC I + A L Sbjct: 287 ATYYSYGDYMIETLSDLFPVSELVDFLEACEVHRPITIRTNTLKTRRRDLAQALINRSVN 346 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV N VLD+C A Sbjct: 347 LDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCA 406 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT+ + + + V A D++ RL + NL RL + I D F Sbjct: 407 PGGKTSYIAQLMKNTGSVVANDMNAERLRSVVGNLHRLGVTNCIISNYDGRQISKILGGF 466 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V + DI + A Q++L+L I + + GG +V+ Sbjct: 467 DRVLLDAPCSGTGIISKDPAVKTNKSVQDIQRCAHIQKELVLSAIDALDAQSQTGGFLVY 526 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V+LVP + K R P + Sbjct: 527 CTCSITVEENECVVDYALKKR--NVKLVPTGLDFGK-----EGFVRFKERRFHPSLRQTR 579 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF LR+ Sbjct: 580 RFYPHTHNMDGFFIAKLRK 598 >gi|312086545|ref|XP_003145118.1| nucleolar protein [Loa loa] gi|307759717|gb|EFO18951.1| nucleolar protein [Loa loa] Length = 692 Score = 160 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 129/326 (39%), Gaps = 30/326 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 E+ ++ + L + ++T +L ++ G Sbjct: 245 CSYYGYNEYLIQKFMGIFPNGTELLEFLEANEQPRPVIIRSNSLKTRRAELARNLINRGM 304 Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + + + P + G + +Q S+ +PV ++LD+C+ Sbjct: 305 NVDPAAEWTKVGLIVYDSQVPVGATPEYLAGHYMLQGLSSFLPVMALAPQPEETILDVCS 364 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306 APGGK++ + + + + A D + +R + NL RL + + +D ++ Sbjct: 365 APGGKSSHIAALMKNTGVLYANDANMQRCRAVIGNLHRLGVNNAVVSNLDGREFAKIMPQ 424 Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIV 361 FD VL+DAPCS TG I + V RD+ D+ + QR+L+L + + K GG + Sbjct: 425 GFDRVLLDAPCSGTGVIWKDESVKTRRDSQDVQRCHTLQRELILAALDSINANSKTGGYL 484 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DM 419 V+S CS+ +++E VV LR + + L+ + R P + Sbjct: 485 VYSTCSVLVEENEAVVDYALRKRDCKLVAMGLDIGV-------QGFTKFREYRFHPSLSL 537 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445 + +DGFF ++L K Sbjct: 538 TRRYYPHVHNIDGFFVAKFKKLSNSK 563 >gi|241207260|ref|YP_002978356.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861150|gb|ACS58817.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 429 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 152/448 (33%), Gaps = 46/448 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++D Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ A +++ +++ Sbjct: 67 -----DSPAAIAHAVM-------------FRQWGFTPDRLATELADDKFAPAPLSADAVA 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE--- 187 + + IPEW + E +G + A + +DL Sbjct: 109 AFQSRSLDDAPPHIRGDIPEWVQPSFEQAFGAGWLAEA-QALAARPTLDLRANSLKASRD 167 Query: 188 ---TWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF 237 + NA ++ ++ + F +G + VQD + I L Sbjct: 168 KVVKALERANAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + VLD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LAHDGEQVLDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + D VLVDAPC+ TGT RR PD W ++ + Q+ L Q SF Sbjct: 288 DDARALAALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASSF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS-AYWKSIDMAMALSPEGWI 413 VK GG +++ CS+ Q++EE ++ +P + L + D S +G Sbjct: 348 VKSGGELIYVTCSVLPQENEEQARRFTADNPDFQIVSALPAWDQLFGKDAPRPHSSDG-- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + S+ DGFF ++R Sbjct: 406 -----LSVTLTPASTDTDGFFFCRMQRK 428 >gi|148910608|gb|ABR18374.1| unknown [Picea sitchensis] gi|224286369|gb|ACN40892.1| unknown [Picea sitchensis] Length = 641 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 131/349 (37%), Gaps = 24/349 (6%) Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 A R + + + + + P L R + Sbjct: 176 ALRQEGTTRKDYVNQLVADLSLYYGYNDYLVQTFLEMFPVAEVVELIEANEISRPTCLRT 235 Query: 171 ACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + DL V + L G+ + + I + P + G + +Q AS Sbjct: 236 NTLKTRRRDLAGVLINRGVNLDPLGK--WSKVGLIVYDSQVPIGATPEYMAGHYMLQSAS 293 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 + +PV VLD+ AAPGGKT + + + + A ++ RL+ L N+ R+ Sbjct: 294 SFLPVMALAPQEKERVLDMAAAPGGKTTYIAALMKNTGIIYANELKNSRLKSLSANIHRM 353 Query: 287 HLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + I D + D VL+DAPCS TG I + +V + +DI+K A Sbjct: 354 GVTNSIICNYDGRELPKVLGLNSLDRVLLDAPCSGTGIIWKDENVKSKKSAEDIMKCAFL 413 Query: 344 QRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q++LLL I V K GG +V+S CS+ ++E VV L + V L+ Sbjct: 414 QKQLLLAAIDMVDAGSKSGGYLVYSTCSITVAENEAVVNYALSKRDVKVVPCGLDFGQHG 473 Query: 400 SIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRL--IQP 444 + R P + + MDGFF L+++ +P Sbjct: 474 FVRFREH-------RFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNTKP 515 >gi|86355962|ref|YP_467854.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli CFN 42] gi|86280064|gb|ABC89127.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli CFN 42] Length = 429 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 86/448 (19%), Positives = 153/448 (34%), Gaps = 44/448 (9%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++D Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ Q + D DLA ++ +++ Sbjct: 67 -----DSASAIAHAVM---FRQWGF--TPDSLGADLAD--------DKFAPTPLSADALA 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + IPEW + E +G + A + +DL + Sbjct: 109 AFASRSLDDAPPHIRGDIPEWVQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKASRD 167 Query: 191 HKLNAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLF 237 + A+ ++ + F +G + VQD + I L Sbjct: 168 KAVKALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + +LD CA GGKT + + + +V A D +RRL + L R + Sbjct: 228 LAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRRRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + + D VLVDAPC+ TGT RR PD W ++ + Q+ L Q F Sbjct: 288 DDVKGLFGLAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLAERTAQQQDALAQASGF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GG +++ CS+ Q++EE V++ +P + L + A + Sbjct: 348 VKTGGELIYVTCSVLPQENEEQVRRFTADNPDFQIVSALPAWDGLFGKDAPHPHSSDGLT 407 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + S+ DGFF ++R Sbjct: 408 V------TLTPASTDTDGFFFCRMQRKA 429 >gi|78067943|ref|YP_370712.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383] gi|77968688|gb|ABB10068.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383] Length = 463 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 100/440 (22%), Positives = 170/440 (38%), Gaps = 39/440 (8%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R+ +L L + + + + + T+R L D ++ + + P Sbjct: 43 RRGTALPAALSAVFAQMPSGAQALA-RGATQDVAYRTMRRLGSADWLIGRFISKAPP--- 98 Query: 80 YSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 + +L + A +L + VVD AV +E +VN++LRR RE+ Sbjct: 99 AHVHAVLAGAFALLLDPADEAAYPAFTVVDQAVTVIGARRECAFAKGMVNAVLRRFLRER 158 Query: 136 IEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 L + W+ + ++ + ++ + L V + Sbjct: 159 DALVAALQDDVVARWNYRAWWVDSVKRAWPDAWQAILAAGERQGP-LTLRVNARRASVDA 217 Query: 192 KLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L+ + +PGFA+GV VQDA A + + G + + Sbjct: 218 YLDTLRANGIEATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGARDGMR 277 Query: 245 VLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFD 300 VLD CAAPGGKT ++ + A+V AL+ R ++ NL RL L A D+ D Sbjct: 278 VLDACAAPGGKTGHILELADAEVVALESDATRAARIGENLVRLSLEA-DVRVGDAGAPGA 336 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + + FD +L D PCS++G +RRHPD+ W R DI QR++L VKPGG Sbjct: 337 WYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVKPGGE 396 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++ CS+ ++ E + + V L + A Sbjct: 397 LLYVTCSVFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVQGGAA-------------- 442 Query: 421 EKIDGVSSGMDGFFAVALRR 440 ++ DGFF ++ Sbjct: 443 AGALDQNTDHDGFFYAQFQK 462 >gi|329120291|ref|ZP_08248959.1| RsmB/NOP family methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327462632|gb|EGF08955.1| RsmB/NOP family methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 422 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 87/445 (19%), Positives = 158/445 (35%), Gaps = 54/445 (12%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L+ ++ +L L ++D+ + +R + L Sbjct: 12 VLADILAFAQPADAVLSAYLRRHP--KLGRQDRSEIAETAFAAIRHYQK----TAAALPD 65 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + + + L + +++ + EQA + + + Sbjct: 66 PPAQARKAALAALVLG----RGFNISRLDGLADREEQAFLAALKARKNEFSDGLNT---- 117 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKF---DIETW 189 + +P+W + L + +L + P +DL + Sbjct: 118 -----------AAELPQWLTDTLRGSGFPDEDILRFGRSVARPAPLDLRANTLKARRDKI 166 Query: 190 AHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L + + P F +G VQD + + L G Sbjct: 167 LAALQQQGIQAEATPYSPWGIRLRDKAALYGHPLFLDGSIEVQDEGSQLTALLLGAKRGD 226 Query: 244 SVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII----EM 296 +V+D CA GGKT + + ++ A D +++RL KL+ + R L E Sbjct: 227 TVIDFCAGAGGKTLALGAMTANKGRIYAFDTAEKRLSKLKPRMTRAGLTNIHPERIGSEH 286 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS GT+RR+PD+ + + + + A Q +L V Sbjct: 287 DPRISRLNAKAQRVLVDAPCSGLGTLRRNPDLKYRQSPATVAQLAEQQHSILAAAARLVI 346 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V++ CS+ Q++E+ ++ L P E PL+ A + + L ++R+ Sbjct: 347 PGGRLVYATCSILPQENEQQAERFLAEHP---EFEPLDCAALLAA-QKVPLDTGKYLRL- 401 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 D + DGFFA A RR Sbjct: 402 -------DTAAHHTDGFFAAAFRRK 419 >gi|301624894|ref|XP_002941729.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Xenopus (Silurana) tropicalis] Length = 749 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 133/327 (40%), Gaps = 32/327 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 A ++ E L + ++ +AC I + A L Sbjct: 296 ATYYSYGDYMIETLSELFPVSELVDFLEACEVQRPITIRTNTLKTRRRDLAQALINRSVN 355 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + I + P + G + +Q AS+ +PV N VLD+C A Sbjct: 356 LDPLGKWSKTGLVIYDSSVPIGATPEYLAGHYMLQGASSLLPVIALAPQENERVLDMCCA 415 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT+ + + + V A D++ RL + NL RL + I D F Sbjct: 416 PGGKTSYMAQLMKNTGIVVANDMNADRLRSVVGNLHRLGVTNCIISNYDGRQISKVLGGF 475 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V + D+ + A Q++L+L I + + GG +V+ Sbjct: 476 DRVLLDAPCSGTGIISKDPAVKTNKSVQDVQRCAHIQKELILSAIDALDAQSQTGGFMVY 535 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V+LVP + K R P + Sbjct: 536 CTCSITVEENECVVDYALKKR--NVKLVPTGLDFGK-----EGFVRFKERRFHPSLRQAR 588 Query: 422 KIDGVSSGMDGFFAVALRR----LIQP 444 + + MDGFF LR+ + +P Sbjct: 589 RFYPHTHNMDGFFIAKLRKFSNTIPKP 615 >gi|221214672|ref|ZP_03587642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD1] gi|221165562|gb|EED98038.1| ribosomal RNA small subunit methyltransferase B [Burkholderia multivorans CGD1] Length = 490 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 101/476 (21%), Positives = 176/476 (36%), Gaps = 57/476 (11%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + + L +R+ +L L + A + + Sbjct: 34 SSGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 92 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLP--------RKKYSLQQLLRVSVAQILYLDVA 99 + + T+R L +D ++ ++ + P L + Sbjct: 93 ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAGALALLLDADGEAAY-------P 145 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155 + VVD AV +E +VN++LRR RE+ + W+ + Sbjct: 146 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 205 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208 + + ++ + L V + L Sbjct: 206 VRRAWPDAWQAILAAGDRQGP-LTLRVNARRASVDAYLGTLRDNGIEAAAIGRHAVRLAS 264 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267 + +PGFA+G+ VQDA A + + G + + VLD CAAPGGKT ++ + A+V Sbjct: 265 ALPVERIPGFADGIVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHILELADAEVV 324 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324 AL+ R ++ NL RL L A ++ D + + FD +L D PCS++G +RR Sbjct: 325 ALESDASRATRIGENLARLSL-AAEVRVGDAGAPDGWYDGRPFDRILADVPCSASGIVRR 383 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 HPD+ W R DI QR++L VKPGG +++ CS+ ++ E+ + + Sbjct: 384 HPDIRWLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAAC 443 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L ++ + ++ DGFF ++ Sbjct: 444 EDAVRLDAPGQLLPRAASGGAGSE----------GAAGVPDPTTDHDGFFYARFQK 489 >gi|170727779|ref|YP_001761805.1| Fmu (Sun) domain-containing protein [Shewanella woodyi ATCC 51908] gi|169813126|gb|ACA87710.1| Fmu (Sun) domain protein [Shewanella woodyi ATCC 51908] Length = 460 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 79/451 (17%), Positives = 145/451 (32%), Gaps = 57/451 (12%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L VM K+ ++ + + +D+ ++R + R+ + Sbjct: 43 YQLFHQVMDKQQPADRVVGEYFRVNKKHG--SKDRRVIRESLFALFRWWGWL-------- 92 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + Q L + L + E + + ++ Sbjct: 93 -RKFDSQSEIEQTWL-------IQLTINARLESHPWSEFISAWETFAGLVSINSAPEFSH 144 Query: 132 SREKIELLQRIAGISII------PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 ++ L P+WF E + ++R+ + P D Sbjct: 145 ISQRATWLNEQFSEHCFTTDELVPDWFWEVCPSENSEQRLALVESLSSRPPIWGRVQNID 204 Query: 186 IETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 ++ L + I L ++ L + EG +QD + + QL Sbjct: 205 LDDAIQSLQKLDIPAKGCEFFSDSINLGNKNINLNGLSLYKEGELEIQDLGSQVVGQLCQ 264 Query: 239 TLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + + D C+ GGK Q + + A D+ ++ LE+L R Sbjct: 265 PRADDNWWDTCSGAGGKSLQIRSLMLQQSQEAQGSIIASDIRRKPLEELAKRAKRAGFKK 324 Query: 291 EDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + + P FD VLVDAPCS TGT RR+PD+ W D ++ Q +L Sbjct: 325 ITTSPWKSDELPVPHAHFDGVLVDAPCSCTGTWRRNPDMRWIDTIDTVLDKPSLQLDILT 384 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + VK G +V++ CSL ++EEVV+ L + + Sbjct: 385 RSSKAVKAGATLVYATCSLSPLENEEVVKAFLAQHSDFSLEITTHPFTGAK--------- 435 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D + + + DG F + + Sbjct: 436 --------DTMHTVVPYQADTDGMFVARMLK 458 >gi|209551883|ref|YP_002283800.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537639|gb|ACI57574.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 429 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 83/447 (18%), Positives = 150/447 (33%), Gaps = 44/447 (9%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++D Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ Q + A +++ +++ Sbjct: 67 -----DSAAAIAHAVM---FRQWGFT----------PDSLAAELADDKFAPAPLSADALA 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 + IPEW + E +G + A + +DL + Sbjct: 109 AFESRSLDDAPPHIRGDIPEWVQSSFEQAFGAGWLTEA-QALAARPTLDLRANILKSSRD 167 Query: 188 TWAHKLNAVMLPTGGIRLKELP----------ESIVSLPGFAEGVWWVQDASASIPVQLF 237 L + + ++ + F +G + VQD + I L Sbjct: 168 KAVKALERAGAQAAKVARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LAHEGDQVLDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + + VLVDAPC+ TGT RR PD W ++ + Q+ L Q F Sbjct: 288 DDARGLSGLAGRCEKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VKPGG +++ CS+ Q++EE V++ +P + L + A + Sbjct: 348 VKPGGELIYVTCSVLPQENEEQVRRFTADNPDFQIVSALPAWDGLFGKDAPRPHSSDGLT 407 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + S+ DGFF ++R Sbjct: 408 V------TLTPASTDTDGFFFCRMQRK 428 >gi|91793994|ref|YP_563645.1| Fmu (Sun) [Shewanella denitrificans OS217] gi|91715996|gb|ABE55922.1| Fmu (Sun) [Shewanella denitrificans OS217] Length = 464 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 79/444 (17%), Positives = 150/444 (33%), Gaps = 45/444 (10%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + +L + ++ +D+ ++R + R+ +L + Sbjct: 44 VLISKQPADRVLGQYFRENKKHG--SKDRRIIRETLFGLFRWWG----WGQQLLSKEIQA 97 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + ++ L S A + D A + L + + Sbjct: 98 -EANIWYSLLSSTALLEQHAWQDIRSAWQAFAALDSQLIHESEQLLTQGVSVTHKLKAFS 156 Query: 138 L---LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194 + ++P WF + + + L + + PL++ + A N Sbjct: 157 SLTGVNEAKVDDLLPLWFWQHCKLDEAAKLPLIEAMSSRPPLWLRVQKHSRTAVIAELAN 216 Query: 195 ------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 A + + L ++ + + +G VQD + + Q+ + D Sbjct: 217 TEITAEASEYFSDALSLGYQSINLNEVSLYKQGHLEVQDLGSQVIGQICQPKADEHWWDT 276 Query: 249 CAAPGGKTAQLIVSGAKV-----------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 C+ GGKT QL + T+ D+ LE+L+ R I + + Sbjct: 277 CSGAGGKTLQLRSLMYQQANSSNGESGSITSSDIRSNALEELKKRAARAGFDGISIAKWN 336 Query: 298 AFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FD VLVDAPCS TGT RR+PD+ W I Q +L + VK Sbjct: 337 SDALPVEANAFDGVLVDAPCSCTGTWRRNPDMRWLDTASAIEDKPALQLDILTRSSKAVK 396 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V++ CSL +++ VV L ++ L + ++ + + Sbjct: 397 AGGQLVYATCSLADAENQAVVNDFLANNSEFELLEIEHPFNGETT---------KMLTVW 447 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P DG F + + Sbjct: 448 PQDA--------NSDGMFVAKMVK 463 >gi|60416136|gb|AAH90742.1| Si:dkey-91i17.1 protein [Danio rerio] Length = 658 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 131/320 (40%), Gaps = 28/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 ++ +L + + ++ +A + + A L + Sbjct: 268 CTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVN 327 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV S+LD+ AA Sbjct: 328 LDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGESMLDMSAA 387 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D + RL+ + N+ RL + I D + F Sbjct: 388 PGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQFPKVMGGF 447 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPCS TG I + P V +D DI++SA Q++L+L I V GG +V+ Sbjct: 448 DRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNADSQTGGYLVY 507 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 CS+ +++E VV L+ V+LVP + K + R P + Sbjct: 508 CTCSIMVEENEWVVDYALKKR--NVKLVPTGLDFGK-----EGFTRFKEKRFHPSLKLSR 560 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + S MDGFF L++L Sbjct: 561 RFYPHSHNMDGFFVAKLKKL 580 >gi|66812796|ref|XP_640577.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] gi|60468601|gb|EAL66604.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] Length = 647 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 27/331 (8%) Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 L + I +W E + L +A + + + Sbjct: 237 SRQTYMDRLREDICTYFGYSQWLAEVFLKIFNASEALEFFEANETHRPLTIRANTLKVRR 296 Query: 187 ETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + A L A + I+ + + +I + P + G + Q AS+ +PV Sbjct: 297 KDLAEALIARGVHLEPIKWSQVGLTIYDTQVAIGATPEYLAGQYIQQSASSFLPVLALAP 356 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 N VLD+CA+PGGKT ++ + + A DV+K R++ L N+ RL + + + Sbjct: 357 QPNERVLDMCASPGGKTTYIAAMMKNTGTLVANDVNKDRIKSLVANIHRLGVKNCMVSNL 416 Query: 297 DAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D Y FD VLVDAPC G I + P + ++ D++ Q++LLL+ I V Sbjct: 417 DGRQYPSVLSGFDRVLVDAPCVGLGVISKDPQIKISKSEQDVITCTHTQKELLLKAIDSV 476 Query: 356 ----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 GGI+V+S CSL +++E VV LR+ + V + + Sbjct: 477 DASSPTGGIIVYSTCSLTVEENEAVVDYALRNRDVIVVDTTIEFGVDGFTSFRES----- 531 Query: 412 WIRITPD--MLEKIDGVSSGMDGFFAVALRR 440 R P + ++ + MDGF+ L++ Sbjct: 532 --RFHPSLALTKRYYPHTHNMDGFYVAKLKK 560 >gi|172062101|ref|YP_001809753.1| sun protein [Burkholderia ambifaria MC40-6] gi|171994618|gb|ACB65537.1| sun protein [Burkholderia ambifaria MC40-6] Length = 462 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 48/444 (10%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R+ +L L + + + + + T+R L D ++ ++ + P Sbjct: 43 RRGTALPAALAAVFAQMPADAQALA-RGATQDVAYRTMRRLGSADWLIGRLVGKAPPAHV 101 Query: 80 YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + +VD AV +E LVN++LRR Sbjct: 102 QAVLAAALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154 Query: 132 SREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RE+ L W+ + ++ + ++ + L V Sbjct: 155 QRERDALVAALQDDPVARWNYRPWWIDAVKRAWPDTWQAILAAGERQGP-LTLRVNARRA 213 Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + L+ + +PGFA+GV VQDA A + + G Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273 Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 + + VLD CAAPGGKT ++ +GA+V AL+ R ++ NL RL L A D+ D Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL-AADVCVGDAG 332 Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD +L D PCS++G +RRHPD+ W R DI QR++L VK Sbjct: 333 APDAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ ++ E + + V L + Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGV--------------- 437 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + ++ DGFF ++ Sbjct: 438 PAVAAGALDQNTDHDGFFYARFQK 461 >gi|322692462|gb|EFY84371.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium acridum CQMa 102] Length = 657 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 99/444 (22%), Positives = 171/444 (38%), Gaps = 62/444 (13%) Query: 33 YGDSAFRLLSQR-DQILVRAIVNVTLRFLPR-----ID----AVLDFVLISSLPRKKYSL 82 + LS++ D+ L + ID ++D L K +L Sbjct: 164 LTAANIEGLSRKLDRKLAQEAATNAAEMAESALQTNIDGDKPHIIDDDDDDELSAKANAL 223 Query: 83 QQ----LLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 LLR + + + V+D A+ R S +L Sbjct: 224 LAPDLQLLRTRITE-------NIRVLDDFANLAE--------------DGRSRSEYTAQL 262 Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNA 195 ++ + E+ E+L N + A +A + + + ++ A L Sbjct: 263 IKDVCAYYGYSEYLAEKLYNLFTPREAFAFFEANETARPVVIRTNTLRTHRRDLAQALIN 322 Query: 196 VMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + + + P + G + +Q AS+ +P N VLD Sbjct: 323 RGVTLEPVGKWSKVGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLD 382 Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-P 303 + AAPGGKT + + + + A D +K R + L N+ RL + DA ++ P Sbjct: 383 MAAAPGGKTTYMAAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDAREFPKP 442 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGG 359 FD VL+DAPCS TG I + P V + D ++ Q++LLL I V K GG Sbjct: 443 MGGFDRVLLDAPCSGTGVIAKDPSVKTNKTELDFMQLPHTQKQLLLAAIDSVNHSSKSGG 502 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD- 418 +V+S CS+ +++E+VVQ L+ P V+LV A+ K + R P Sbjct: 503 YIVYSTCSVTIEENEQVVQYALKRRPN-VKLVDTGLAFGK-----EGFTSFMGKRFDPSL 556 Query: 419 -MLEKIDGVSSGMDGFFAVALRRL 441 + + + +DGF+ +++ Sbjct: 557 RLTRRYYPHAYNVDGFYVAKFKKI 580 >gi|121609225|ref|YP_997032.1| sun protein [Verminephrobacter eiseniae EF01-2] gi|121553865|gb|ABM58014.1| sun protein [Verminephrobacter eiseniae EF01-2] Length = 470 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 185/461 (40%), Gaps = 59/461 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + +R S T +L D + V+A++ LR R + + + Sbjct: 37 AVAVALQAIRSGQSGTAVLAAVDADL---------RPGVQALLFQVLRQAGRAELLRRQL 87 Query: 71 LISSLPRKKYSLQQLLRVSVAQILY--LDVA--DYAVVDLAVEQAKRDKENRHFAKLVNS 126 + P ++ LL V++A + + D + +V+ AVE AK R + +N+ Sbjct: 88 AARTPP---PAVDALLCVALA-LCWNPEDAPYAPFTLVNQAVEAAKHSAAARAQSAFINA 143 Query: 127 ILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYI--DL 180 LRR RE+ LL P W+ +L + + + + Sbjct: 144 CLRRFLREREALLAATDDDPLARWNHPRWWIRQLRQDHPRHWQQILQANNRHAPMVLRVN 203 Query: 181 TVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQDASASIPV-- 234 K + + L+A+ + P + +LPGFA+G VQDA+A Sbjct: 204 QRKCSLAQYLRALDAIDMQATVVADMGLALRQPVPVQALPGFAQGWVSVQDAAAQKAAPL 263 Query: 235 --QLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 Q L VLD CAAPGGKTA + +VTAL++ R ++ +L RL Sbjct: 264 LLQGLDLRQPLRVLDACAAPGGKTAHLLELAGADAPLQVTALEIDATRSARIDASLQRLG 323 Query: 288 LYAEDIIEMD-------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 L A ++ D +C FDA+L+DAPCS++G +RRHPDV W R DI Sbjct: 324 LGA-QVLVADATRPQDWWQPHCGGAPFDAILLDAPCSASGIVRRHPDVRWLRRATDIAPL 382 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q +LL ++PGG +++ +CS+ + + + VQ L L+P Sbjct: 383 AALQARLLRALWPLLRPGGRLLYCSCSVFRAEGDAPVQAFLAHH-TDARLLPSPGHLLPG 441 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 P+ DGFF L +L Sbjct: 442 NADKDGAVPDN--------------AGGDHDGFFYALLHKL 468 >gi|146185731|ref|XP_001032410.2| NOL1/NOP2/sun family putative RNA methylase containing protein [Tetrahymena thermophila] gi|146143105|gb|EAR84747.2| NOL1/NOP2/sun family putative RNA methylase containing protein [Tetrahymena thermophila SB210] Length = 759 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 75/318 (23%), Positives = 126/318 (39%), Gaps = 24/318 (7%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM 197 + + ++ ++ + + + A L Sbjct: 163 YFMQYYNYNRDLVQLFMTMFNPNELVQFFESNEQQRPLTIRTNTLKTRRKELAQILIQRG 222 Query: 198 --------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 G+++ + I + P + G + +Q AS+ +PV N +LD+ Sbjct: 223 VNLDSLAEWTKVGLKIYDSKVPIGATPEYLAGHYMLQSASSFLPVIALAPQPNEKILDMA 282 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KK 305 AAPGGKT + + + + A DV R + L N+ R+ + + D Sbjct: 283 AAPGGKTTYIAQLMKNTGVLFANDVKADRNKALIFNVQRMGINNCIVTNYDGRKLNKVIH 342 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 D VL+DAPC+ G I R P V T+ D+ K A QR+L+L I K GG VV+S Sbjct: 343 NCDRVLLDAPCTGLGIIARDPSVKATKQLIDVQKHAHLQRELILSAIDCCKKGGYVVYST 402 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKI 423 CS+ Q++E VV L++ V+LV + + + R P + +I Sbjct: 403 CSVTVQENESVVDYALKNR--FVKLVDMGIEVGE-----EGYTKYQDKRFDPQLKKTRRI 455 Query: 424 DGVSSGMDGFFAVALRRL 441 MDGF+ L++L Sbjct: 456 LPHVHNMDGFYVAKLKKL 473 >gi|145344001|ref|XP_001416528.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576754|gb|ABO94821.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 485 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 139/376 (36%), Gaps = 32/376 (8%) Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS--ILRRVSREKIELLQRIAGISI 147 V Q+ D D + DL+ Q + + R N + + L +A Sbjct: 108 VYQLPDSDEEDDGIPDLSAIQMRIQEIVRVLKDFKNRRESGKSRNDYVERLTADLATYYG 167 Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR 204 + + + + + + +A + + A L + + Sbjct: 168 YNSFLIRYFLDTFSVDETMELLEANEQQRPVTIRTNTLKVRRRELAESLINRGVNLDPVG 227 Query: 205 LKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 I + P + G + +Q AS+ +P VLD+ AAPGGKT Sbjct: 228 KWSKVGLLVYDSRVPIGATPEYMAGHYILQSASSFLPCMALAPQEGERVLDMAAAPGGKT 287 Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 L + + + A + K+RL L NL RL + D D VL+ Sbjct: 288 TYLAALMRNTGMIFANEYQKKRLNSLVANLQRLGCTNSTVCNYDGRALPKVIGHVDRVLL 347 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSL 368 DAPCS TG I + V ++ +DI K A Q++LL+ I K GG VV+S CS+ Sbjct: 348 DAPCSGTGVIAKDSSVKTSKSAEDIAKCAHLQKELLVAAIDCCDANSKTGGYVVYSTCSI 407 Query: 369 DKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 +++E VV +LR + + L + S E R P + Sbjct: 408 AVEENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYRGKNFHPSVEMARRFYPHV------ 461 Query: 426 VSSGMDGFFAVALRRL 441 MDGFF L++L Sbjct: 462 --HNMDGFFVCKLKKL 475 >gi|297620390|ref|YP_003708527.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia chondrophila WSU 86-1044] gi|297375691|gb|ADI37521.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia chondrophila WSU 86-1044] Length = 421 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 168/451 (37%), Gaps = 45/451 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 N R + L R+ L L S +D L R + T R Sbjct: 4 TKTKNPREAAYLALLSSAREESFLIDSLAQWQAKCRP---SIQDYHLAREVAYGTTRMAL 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 +D + + K + L R+ + Q Y+D + YA+VD ++ AK + F Sbjct: 61 ALDHLALQLADKKKLALKLREKILFRMGLYQFHYMDKIPLYAIVDETIKIAKIHC-HESF 119 Query: 121 AKLVNSILRRVSREKIE-----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 K +N+ LR+V + + ++ P ++ + L +G E+ I +A P Sbjct: 120 VKFLNACLRKVEEIDPQLPKGETVPELSIRYSYPAYYVQELVQNFGLEKAEEIMEAGNRP 179 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA---EGVWWVQDASASI 232 V+ + G + + + + + + Sbjct: 180 SQTMFRVRPQASRPKEANGEIDFLAGTRCGMGVIRDPSLISNISSSSDYYIQNATPAELM 239 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 ++LDLC++PGGK + A+++A DVS +L+ L N + + Sbjct: 240 SSLAQDFGAPKNILDLCSSPGGKLILAHDLYPDAELSANDVSSGKLKPLSENCAKYGIS- 298 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + ++ + FD V++D PCS+TG + + P+ W + + Q +LL + Sbjct: 299 TTLSSVRGEEFPLAQKFDLVILDVPCSNTGVLNKRPEARWRLSQKTLEQLEEIQLQLLRR 358 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 GI + GG + + CS+ K+++ ++ KV + + L Sbjct: 359 GIELLDKGGELWYLTCSVLKRENGRLIDKVCQELSLETRLKEA----------------- 401 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I P+ + G DG F ALR++ Sbjct: 402 ----ILPN--------ADGWDGGFGCALRKI 420 >gi|149200044|ref|ZP_01877070.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa HTCC2155] gi|149136917|gb|EDM25344.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa HTCC2155] Length = 407 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 97/450 (21%), Positives = 181/450 (40%), Gaps = 52/450 (11%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +++ +L + DLE + D + R Sbjct: 1 MKDNKTFKTLSLATQVLKNWTQSHN-----FDLELNRLRRSGNHESDLKRASQLCLCVFR 55 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 ++ ++ + + + LL S+A +LY+D + D AVE AK+ + Sbjct: 56 KKESLEKIVKKLSQKRPRGR---VMHLLLPSMAAMLYMDKITPQGFADSAVEAAKKI-LS 111 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +H A +NS ++ +K LL+ + ++ + + E+V + + Sbjct: 112 KHEANFLNSFFHKLVDQKENLLREAQNDLNLGSELEKNWKKSFSAEQVQSFASTLSLEAE 171 Query: 178 I-DLTVKFDIETWAHKLNAVML--PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + + +D L + P ++ + + I P + +++QD + S+ + Sbjct: 172 LNCRLINYDNHDLLSPLEDLAWDSPFQFYKINDAAKFISQTP---QENFYIQDPATSLCI 228 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L + + DLC+APGGKT + +V A D+S++RLE+LR NL Sbjct: 229 SLLKPQKDEVIADLCSAPGGKTLMISHLLEGTGQVFASDISEKRLERLRENLAHQ--SNV 286 Query: 292 DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + +DA + FDA+L+D PCS+TG +RR PD W+ + + Q ++L Q Sbjct: 287 TVQCLDARSSDYSEKFDAILLDVPCSNTGVLRRKPDARWSFSQKKVNELVELQAEILAQA 346 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG + +S CS++ ++ + V+ ++S P EL Sbjct: 347 AKMLKAGGRICYSTCSIEAAENIQQVENFIKSHP-DFELSESR----------------- 388 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ P DG FA L+R Sbjct: 389 --QLYPCPQ---------HDGAFAATLQRK 407 >gi|46581764|ref|YP_012572.1| sun protein [Desulfovibrio vulgaris str. Hildenborough] gi|46451187|gb|AAS97832.1| sun protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232323|gb|ADP85177.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1] Length = 507 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 95/505 (18%), Positives = 157/505 (31%), Gaps = 103/505 (20%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V+R + + LD LS++D L +V LR R+ Sbjct: 35 PARAGALVALDAVVRAGVDVQAALDDSLSH---ASLSRQDAALCTELVYGYLRSEIRLSW 91 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + + LL ++ ++ D V YA +D AV + ++L Sbjct: 92 LVRRFLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGT-GVSRLA 149 Query: 125 NSILRRVSREKIEL------------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 N++LR V R R+ P W + + YG+E+ A+ +A Sbjct: 150 NAVLRNVDRLGDAWRVADFYACVGDNRDRLCVRHSAPRWLVDLWCDGYGEEKTTALLEAS 209 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGI----------RLKELPESIVSLPGFAEGV 222 + + + A L ++ G +EG Sbjct: 210 LLHPAPGVRINLARADGADCLQQLLSGNAGTGRQAAGKAGVVFTSGGTPSEVTSLVSEGR 269 Query: 223 WWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280 Q ++ + D C GGKTA L+ +G V A D S RL LR Sbjct: 270 ASRQSGASQSALAALEPEVWPGPVWDCCCGRGGKTAALVETGVAVVAASDPSMSRLRGLR 329 Query: 281 CNLDRLHLY-----------------AEDIIEMDAFDYCPKKLFDA-------------- 309 + RL L A D D Sbjct: 330 RDFARLGLPVPLAVRASAVRPPFSCAASMARAGSCGDGGSPLAIDGIEVEVSRGQSATGL 389 Query: 310 --------------VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 +LVDAPCS GT+ R PD+ R T I + Q +L + Sbjct: 390 VNASGLGSGGLFGTILVDAPCSGLGTLSRRPDIKRKRTTAQIAELVALQEAILDAVWPCL 449 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 + G++ + C+ + Q++E + L + L + + Sbjct: 450 RSDGVLAYITCTRNPQENELRIAAFLERH-LDARLEIAYETPLEDVSREF---------- 498 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 F+A LR+ Sbjct: 499 -----------------FYAARLRK 506 >gi|328784827|ref|XP_001121968.2| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Apis mellifera] Length = 657 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 136/335 (40%), Gaps = 28/335 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183 I R S L + + + E+L + + +L +A + + Sbjct: 314 INRSRSEYMNLLRRDLCTYYSYNNFLMEKLMQIFSLDELLEFLEASEVQRPMTIRTNILK 373 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQ 235 A L + I + + P + G + +Q AS+ +PV Sbjct: 374 TRRRDLAEALINRGVNLDPIGKWTKVGLVVYSSQVPMGATPEYLAGHYILQGASSFLPVM 433 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 N +LD+CAAPGGK++ + + + + + DV++ R++ + N RL + Sbjct: 434 ALDPKENEKILDMCAAPGGKSSHIAALMKNTGVLFSNDVNEERIKAVVGNFHRLGITNSV 493 Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + D FD VL+DAPC+ TG + + P V +D DI + QR+LLL Sbjct: 494 VCTYDGRKLPSVIKNFDRVLLDAPCTGTGVVSKDPSVKTNKDEIDIQRCCTLQRELLLAA 553 Query: 352 ISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 I GGI+V+S CS+ +++E ++ L+ V+L+ + A Sbjct: 554 IDCANARSESGGIIVYSTCSILPEENEWIIDYALKKR--DVKLISTGLEFG-----AEGF 606 Query: 408 SPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRR 440 + R P + ++ + MDGFF L++ Sbjct: 607 TSYRQFRFHPSLKLTKRFYPHTHNMDGFFVAKLKK 641 >gi|189529666|ref|XP_001922354.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2 [Danio rerio] Length = 739 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 28/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 ++ +L + + ++ +A + + A L + Sbjct: 273 CTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVN 332 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV SVLD+ AA Sbjct: 333 LDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGESVLDMSAA 392 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D + RL+ + N+ RL + I D + F Sbjct: 393 PGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQFPKVMGGF 452 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPCS TG I + P V +D DI++SA Q++L+L I V GG +V+ Sbjct: 453 DRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNADSQTGGYLVY 512 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 CS+ +++E VV L+ V+LVP + K + R P + Sbjct: 513 CTCSIMVEENEWVVDYALKKR--NVKLVPTGLDFGK-----EGFTRFKEKRFHPSLKLSR 565 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + S MDGFF L++L Sbjct: 566 RFYPHSHNMDGFFVAKLKKL 585 >gi|134025020|gb|AAI35007.1| Si:dkey-91i17.1 protein [Danio rerio] Length = 676 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 131/320 (40%), Gaps = 28/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 ++ +L + + ++ +A + + A L + Sbjct: 273 CTYYSYNQFLISKLMDLFSLSELIDFLEANEVHRPVTIRTNTLKTRRRDLAQALINRGVN 332 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV SVLD+ AA Sbjct: 333 LDPLGKWSKVGLVIYDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGESVLDMSAA 392 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D + RL+ + N+ RL + I D + F Sbjct: 393 PGGKTTYMAQLMRNTGMIVANDANVDRLKSVVGNIHRLGVTNAVICNYDGRQFPKVMGGF 452 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPCS TG I + P V +D DI++SA Q++L+L I V GG +V+ Sbjct: 453 DRVLLDAPCSGTGVISKDPAVKTGKDEADILRSAHLQKELILSAIDSVNADSQTGGYLVY 512 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 CS+ +++E VV L+ V+LVP + K + R P + Sbjct: 513 CTCSIMVEENEWVVDYALKKR--NVKLVPTGLDFGK-----EGFTRFKEKRFHPSLKLSR 565 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + S MDGFF L++L Sbjct: 566 RFYPHSHNMDGFFVAKLKKL 585 >gi|195401394|ref|XP_002059298.1| GJ18081 [Drosophila virilis] gi|194142304|gb|EDW58710.1| GJ18081 [Drosophila virilis] Length = 840 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 17/246 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + P + G + VQ AS+ +PV N VLD+C+APGGK + + + Sbjct: 394 IFNSTVPLGATPEYLAGHYMVQGASSMLPVIALAPQENERVLDMCSAPGGKGSHIAAVMK 453 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320 + + A D ++ R++ + N RL + + DA + FD VL+DAPC+ TG Sbjct: 454 NTGVLFANDANRDRIKAVVANFHRLGIVNAVVSCEDATKFRSIMTGFDRVLLDAPCTGTG 513 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEV 376 + + P V T+ D+ + QRKLLL I V GG +V+S CS+ +++E V Sbjct: 514 VVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDAKSATGGYIVYSTCSVLPEENEWV 573 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFF 434 + L+ V+LVPL + + + R P + ++ ++ MDGF+ Sbjct: 574 IDYALKKR--NVKLVPLGIDFGEP-----GFTKFRQHRYHPSLHLSKRFYPHTNNMDGFY 626 Query: 435 AVALRR 440 L++ Sbjct: 627 VAKLKK 632 >gi|239813610|ref|YP_002942520.1| sun protein [Variovorax paradoxus S110] gi|239800187|gb|ACS17254.1| sun protein [Variovorax paradoxus S110] Length = 442 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 115/433 (26%), Positives = 173/433 (39%), Gaps = 42/433 (9%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96 AF + + V+A+ LR+L R +A+ + + P +L + Sbjct: 28 AFEAVEPAMRPGVQALGFQVLRWLGRAEALRRHLAKRTPPPLPDALLCTALALAWDAQHA 87 Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWF 152 + +VD AVE AKR+ R A +N+ LRR RE+ EL+ P W+ Sbjct: 88 PYEPFTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDELVAATDHEPVAQWNHPRWW 147 Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA-------VMLPTGGIRL 205 ERL+ + ++ + A + + L V T A A + Sbjct: 148 IERLKRDHPRDWQRVL-AADNAQPPMTLRVNLRKTTVASYQLALQAVGLTAVRVGEAGLQ 206 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT-------LNNLSVLDLCAAPGGKTAQ 258 + LPGFA+G VQDA+A + L L VLD CAAPGGKTA Sbjct: 207 LARARPVQQLPGFADGECSVQDAAAQLAAPLLLEGLLPAAGAAPLRVLDACAAPGGKTAH 266 Query: 259 LIVSG----AKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLV 312 L+ +VTAL+V R ++ L RL L A + FDA+L+ Sbjct: 267 LLEFAGPAAIEVTALEVDAARSRRIDETLGRLGLSARVVVADAARPAAWWDGTPFDAILL 326 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPC+++G +RRHPDV W R D + A Q LL V+PGG +++ CS+ +++ Sbjct: 327 DAPCTASGIVRRHPDVRWLRRESDTAQLAVQQAALLAALWPLVRPGGRLLYCTCSVFREE 386 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 + + L L P+ S DG Sbjct: 387 GSQQIDAFLA-HNTDARLGASPGHLLPQSGANARAVPDN--------------PSGDHDG 431 Query: 433 FFAVALRRLIQPK 445 FF L + +P+ Sbjct: 432 FFYALLEK--RPR 442 >gi|120601083|ref|YP_965483.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4] gi|120561312|gb|ABM27056.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4] Length = 507 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 96/505 (19%), Positives = 158/505 (31%), Gaps = 103/505 (20%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V+R + + LD LS++D L +V LR R+ Sbjct: 35 PARAGALVALDAVVRAGVDVQAALDDSLSH---ASLSRQDAALCTELVYGYLRSEIRLSW 91 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L + + + LL ++ ++ D V YA +D AV + ++L Sbjct: 92 LVRRFLKAP-SKLPPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALYGT-GVSRLA 149 Query: 125 NSILRRVSREKIEL------------LQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 N++LR V R R+ P W + + YG+E+ A+ +A Sbjct: 150 NAVLRNVDRLGDVWRVADFYACVADNRDRLCVRHSAPRWLVDLWCDGYGEEKATALLEAS 209 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPT----------GGIRLKELPESIVSLPGFAEGV 222 + L + A L ++ G+ +EG Sbjct: 210 LLHPAPGLRINLARADGADCLQQLLSGNVGTGRQAAGKAGVVFTSGGTPSEVTSLVSEGR 269 Query: 223 WWVQDASASIPVQLFGTLNNLSV-LDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLR 280 Q ++ + D C GGKTA L+ +G V A D S RL LR Sbjct: 270 ASRQSGASQSALAALEPEVWPGPVWDCCCGRGGKTAALVETGVAVVAASDPSMSRLRGLR 329 Query: 281 CNLDRLHLY-----------------AEDIIEMDAFDYCPKKLFDA-------------- 309 + RL L A D D Sbjct: 330 RDFARLGLPVPLAVRASAVRPPFSCAASMARAGSCGDGGSPLAIDGIEVEVSRGQSATGL 389 Query: 310 --------------VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 +LVDAPCS GT+ R PD+ R T I + Q +L + Sbjct: 390 VNASGLGSGGLFGTILVDAPCSGLGTLSRRPDIKRKRTTAQIAELVALQEAILDAVWPCL 449 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 + G++ + C+ + Q++E + L + L + + Sbjct: 450 RSDGVLAYITCTRNPQENELRIAAFLERH-LDARLEIAYETPLEDVSREF---------- 498 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 F+A LR+ Sbjct: 499 -----------------FYAARLRK 506 >gi|193638967|ref|XP_001943714.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Acyrthosiphon pisum] Length = 657 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 76/365 (20%), Positives = 143/365 (39%), Gaps = 28/365 (7%) Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156 + ++ + ++ K R LL+ + + E++ Sbjct: 243 KIDEHIPIPEVEQRIKDILLVLSNFNKFREENRSRQEYTELLLKDLCTYFSYNTFLMEKM 302 Query: 157 ENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE--- 210 + + E +++ +A +P + + A L + I Sbjct: 303 MHLFPLEDLMSFLEASETPRPVTIRTNSLKTRRRDLAQALINRGVNLDPIGNWSKVGLVV 362 Query: 211 -----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 I + P + G + +Q AS+ +PV N +LD+C+APGGK + + + + Sbjct: 363 YNSTVPIGATPEYLAGHYMLQAASSMLPVMALAPQENELILDMCSAPGGKASHIAAIMKN 422 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGT 321 + A DV+K R + + N R+ + I D FD VL+DAPC+ TG Sbjct: 423 TGVLIANDVNKNRAKAVIGNFHRMGIANSVISTYDGRHIPQLFKNFDRVLLDAPCTGTGV 482 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVV 377 I + V ++D D+ + QR+LLL I + GG +V+S CS+ +++E V+ Sbjct: 483 ISKDSGVKMSKDETDLQRCFTLQRELLLAAIDSLNFKSSTGGYLVYSTCSVLVEENECVI 542 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFA 435 L+ + + L+ ++ R P M ++ + MDGFF Sbjct: 543 DYALKKRDVKLVDTGLSFGTEGFTNLRQH-------RFHPTMKLTKRFYPHTHNMDGFFV 595 Query: 436 VALRR 440 L++ Sbjct: 596 AKLKK 600 >gi|94496910|ref|ZP_01303484.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. SKA58] gi|94423586|gb|EAT08613.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. SKA58] Length = 391 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 159/455 (34%), Gaps = 77/455 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ + L+ + + + RD+ VR + Sbjct: 1 MTPS--ARIQAAIELLDAIIAAARDGGPAADTLIARYFKERRYAG--SRDRRAVRDHIYD 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R + + + Q D A + A Sbjct: 57 AIRR----------AAERPDTGRAA------MIGLTQ----DQPALAALFDGSPHAPLPI 96 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 E L ++ + +++ A + P + + + Sbjct: 97 EPGEAGALARAVPGWLQPLLAAPVEQDALLGRAPVDLR---------------VNRLRAT 141 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + + D + +A+ LP G + P + +G+ VQDA + Sbjct: 142 PAQVVPLLPDAIAISGLPDALRLPEGW--------PVEQHPAWQDGLVEVQDAGSQWIAA 193 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + ++V+DLCA GGKT A + ++ A D + RL +L +R D Sbjct: 194 ACDARSGMTVVDLCAGAGGKTLALAAAMAGQGRLIAADTIRSRLARLEPRAERAGATFID 253 Query: 293 IIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + +D ++ D VLVDAPCS TGT RR+P+ W + + Q ++ Sbjct: 254 TLLLDQSHEARGLAHLQEQADVVLVDAPCSGTGTWRRNPEARWRLTPARLDRLVAEQARI 313 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L V+PGG++V++ C+L ++ + V L + + ID+ + Sbjct: 314 LDFAAPLVRPGGLLVYATCALVDREGRDQVAAFLDRHEGWI---------AEPIDLPVGR 364 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + G + +TP G DGF+ LRR Sbjct: 365 AHGGGLLLTPGH--------DGSDGFYFARLRRQA 391 >gi|332018753|gb|EGI59318.1| Putative ribosomal RNA methyltransferase NOP2 [Acromyrmex echinatior] Length = 677 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 130/322 (40%), Gaps = 28/322 (8%) Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV 196 + + E+L + + +L +A + + A L Sbjct: 346 MDLCTYYSYNNFLMEKLMQIFPLDELLEFLEASEVQRPMTIRANTLKTRRRDLAEALINR 405 Query: 197 MLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 + I + + P + G + +Q AS+ +PV N +LD+ Sbjct: 406 GVNLDPIGKWTKIGLVVYSSQVPMGATPEYLAGHYMIQGASSFLPVMALDPKENERILDM 465 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 CAAPGGK + + + + + A D++K RL+ + N RL + I D + Sbjct: 466 CAAPGGKASHIAAIMKNTGTLFANDLNKERLKAVVGNFHRLGIVNCVICSYDGRKFPTII 525 Query: 306 L-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGI 360 FD VL+DAPC+ TG + + P V + DI + QR+LLL I V G I Sbjct: 526 KGFDRVLLDAPCTGTGVVAKDPSVKANKAEVDIQRCCTLQRELLLAAIDCVNARSESGAI 585 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD-- 418 +V+S CS+ +++E ++ L+ V+L+P + + + R P Sbjct: 586 IVYSTCSILPEENEWIIDYALKKR--DVKLLPTDLEFG-----TDGFTSYRQYRFHPSLK 638 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + ++ MDGFF L++ Sbjct: 639 LTKRFYPHVHNMDGFFVAKLKK 660 >gi|42522650|ref|NP_968030.1| putative sun protein [Bdellovibrio bacteriovorus HD100] gi|39575182|emb|CAE79023.1| putative sun protein [Bdellovibrio bacteriovorus HD100] Length = 395 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 75/455 (16%), Positives = 152/455 (33%), Gaps = 76/455 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + L + + ++ ++ RD+ V +R+ Sbjct: 1 MKIHKHLVSEIVTALDEIFEQGFYADKVIQRHLKANSRWG--SRDRRFFAESVYEIVRWE 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + + D + L + + + Sbjct: 59 RLLSHLAD---DNDLWKVW---------GAY--------WVRGGNELPDW---------- 88 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + ++ + + + + + A IP+W ER E A P + L Sbjct: 89 -EELDGLDPKEVIAREKNVSSFAIAQSIPDWMHER-GTLELGEEWKDAMRALNKPAEVFL 146 Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASA 230 + L + + +++ F +G++ VQDA++ Sbjct: 147 RTNTLKTTPDELIKTLEKDGINATKVSPDLPNALRLVERKNVFITESFKQGLFEVQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + L G V+D CA GGK+ ++ + K+ +LD+ +L++L+ R Sbjct: 207 QMVAPLLGIEPGHRVIDACAGAGGKSLHMASMMKNKGKIISLDIHDWKLKELKVRARRDG 266 Query: 288 LYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + +D+ + D VL+D PCS G +RR+PD W ++I + Q Sbjct: 267 VDVIETRLIDSNKVIKRLYDTADRVLLDVPCSGMGVLRRNPDTKWKLSNEEIDRLHGLQY 326 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L + K GG +V++ CSL ++E+ ++K + L+ Sbjct: 327 EILSTYCNMTKKGGQMVYATCSLLPSENEKQIEKFMAEHGKDWTLL-------------- 372 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G DGF+A L+R Sbjct: 373 -------------KQIHVRPDKEGYDGFYAALLKR 394 >gi|332285815|ref|YP_004417726.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7] gi|330429768|gb|AEC21102.1| hypothetical protein PT7_2562 [Pusillimonas sp. T7-7] Length = 451 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 101/457 (22%), Positives = 179/457 (39%), Gaps = 55/457 (12%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP- 76 ++ ++ +L + + +++ +R L AV ++ + P Sbjct: 18 ILASAQNVQAVLAGRSLSDSLAATPASLRASAQSVAFHVMRRLGIARAVKQILVRRTPPN 77 Query: 77 ------------RKKYSLQQLLRVSVAQILYLDVAD---YAVVDLAVEQAKRDKENRHFA 121 +L+ + + + + VVD AV+ A R + Sbjct: 78 PGFDALLLVSLALLDTALEYADDAAPDPAKWRHIPVYAVHTVVDQAVKAADSQHRMRTYK 137 Query: 122 KLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR RE+ + + + P W+ ++L Y + + A + Sbjct: 138 ALLNGVLRGFIRERSAILAQAGENPEAVFNHPAWWIDQLRRSYPDQWQALLHSANVPGPM 197 Query: 178 -IDLTVKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + + + + + A + P + +PGF +G W VQD +A Sbjct: 198 TLRVNQRRSSVPQILASLAEAGIPAVHVRDEAIALLTPRPVHEVPGFEQGWWSVQDLAAQ 257 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L + VLD CAAPGGKTA L + ++ ALD + RLE++ NLDRL L + Sbjct: 258 QAGLLLPVQPGMRVLDACAAPGGKTAHLLERADVELLALDADQGRLERVTQNLDRLGLNS 317 Query: 291 -----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 D + + FDAVL D PC+++G +RRHPD+ W R + DI K+A QR Sbjct: 318 KSVSLCCADAADVPSWWDGRPFDAVLADVPCTASGVVRRHPDIRWLRRSADIAKTAALQR 377 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++ + VKPGG ++++ CS+ Q+ E+ +K + L Sbjct: 378 SIVDALWTTVKPGGHMLYATCSIFPQEGEQQAKKFATRHSDAIRLAAPG----------- 426 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P ++ DGFF + Sbjct: 427 --------QLLPLADDQAVSH----DGFFYALFAKTA 451 >gi|228472598|ref|ZP_04057358.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga gingivalis ATCC 33624] gi|228276011|gb|EEK14767.1| ribosomal RNA small subunit methyltransferase B [Capnocytophaga gingivalis ATCC 33624] Length = 408 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 85/460 (18%), Positives = 155/460 (33%), Gaps = 78/460 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + + +++ +D+ + + +R+ Sbjct: 1 MRLHRNLVDAVVDGFMQINNDGLYADKVIERLLKRDKRWG--SKDRAFIAETLYELVRYK 58 Query: 61 PRIDAVLDFVLISSLPRKKYS--LQQLLR-VSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + ++ + + +LR +++ + + + Sbjct: 59 RLYTEIAQEKAPFTVQSSRRVFAVWAVLRGITLPEWYFEGTPE----------------- 101 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 RR+ EL + A +P+W G+E A Sbjct: 102 -----------RRIKGRFDELSRVRALRESVPDWLDALGVAELGEEAWGEELHALNQQAA 150 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L V D E +L T + ++ F +G++ +QDA Sbjct: 151 VVLRVNTLKIDREALRAQLAKEGYETEPLEGYPDALQLKKRANVFLSEAFKQGLFELQDA 210 Query: 229 SASIPVQ-----LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLR 280 S+ + +L V D CA GGKT L+ K+ A+D+ ++L++L Sbjct: 211 SSQRVAPLLLGAWNPSQGSLKVADCCAGAGGKTLHLAALMGGKGKIVAMDIYPQKLDELS 270 Query: 281 CNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 R Y + ++ + FD VL+DAPCS G +RR+PD W + + + Sbjct: 271 RRAKRNGAYNIETRLIETKYLKRQRGTFDRVLIDAPCSGLGVLRRNPDTKWKLTPEFLEE 330 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q +LL Q VK GG +V++ CS+ ++E+ VQ L S Sbjct: 331 IRQTQAQLLAQYSLLVKEGGSLVYATCSILPSENEQQVQHFLAS---------------- 374 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + I + G DGF+ ALR Sbjct: 375 EAGKRFTLVEQHKI-----------SATQGYDGFYMAALR 403 >gi|261856758|ref|YP_003264041.1| Fmu (Sun) domain protein [Halothiobacillus neapolitanus c2] gi|261837227|gb|ACX96994.1| Fmu (Sun) domain protein [Halothiobacillus neapolitanus c2] Length = 430 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 89/444 (20%), Positives = 158/444 (35%), Gaps = 50/444 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +L ++ + L + A R + +RD+ ++ +V LR +D +L Sbjct: 24 QRAAAVLDVILSDGVPSDRALQHCFR--AERQMGKRDRAQLQTLVFFVLRHWRLLDELLG 81 Query: 69 ---FVLISSLPRKKYSLQ--QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + S+L R ++ LL ++A++ V +D+ A+ R + Sbjct: 82 VPPGEVASALGRVGMAVHLAGLLDETLAEL--TGVVARPQIDMVERIARSSPAKRFGLRD 139 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + + A ++ P + + + + I Sbjct: 140 EDMARLEAAFGSDAAAVAKALLARAPVDIRVNSAVTEPRALAETLLALGLESTPIPGLPN 199 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + + SL + G + +QDA + V+ + Sbjct: 200 GLR-------------------LSDNKPLTSLDAYHAGAFEIQDAGSQWIVEACQAQSGQ 240 Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCA GGK A+ + V A D RL +L R + + Sbjct: 241 HVLDLCAGAGGKSLGLAEAVGEQGHVLACDTEAERLARLPERSARAGWRNIECQPIADSA 300 Query: 301 YCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FD VL+DAPCS +GT RRHP++ D+ Q +LL G+ K Sbjct: 301 DPELQRRGPFDRVLIDAPCSGSGTWRRHPELRQI--PPDLEALCATQAQLLDDGVRLTKT 358 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G+++++ CSL ++++E + L P A + G RI P Sbjct: 359 DGLLIYATCSLWREENEMQIASFLARHPDW------RVAELPAGMTHALTVVAGMARIRP 412 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 D+ G DGFF L+R Sbjct: 413 DIQ--------GSDGFFFCVLQRK 428 >gi|255081408|ref|XP_002507926.1| predicted protein [Micromonas sp. RCC299] gi|226523202|gb|ACO69184.1| predicted protein [Micromonas sp. RCC299] Length = 592 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 78/323 (24%), Positives = 125/323 (38%), Gaps = 34/323 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199 A + + + + + + +A + + L A L + Sbjct: 166 ATYYGYNTFLIQYFLDTFSVAETMELLEANETQRPVTLRTNTLKCRRRELAASLINRGVN 225 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +P + VLD+ AA Sbjct: 226 LDPIGKWSKVGLLVYDSRVPIGATPEYMAGHYMLQSASSFLPCMALAPQDGERVLDVAAA 285 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT L + + + A + K+RL L NL R+ + D Sbjct: 286 PGGKTTYLAALMRNTGMIFANEFQKKRLSSLVANLQRMGCTNATVCNYDGRQLPKVLGHV 345 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V ++ DI K A Q++LL+ I K GG VV+ Sbjct: 346 DRVLLDAPCSGTGVIAKDSSVKVSKSEADINKCAHLQKELLVAAIDCCDANSKTGGYVVY 405 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-----DMAMALSPEGWIRITPD 418 S CS+ +++E V+ +L+ V+LVP + + S E R P Sbjct: 406 STCSITVEENEAVLDYILKKR--DVKLVPTGLEFGRPGFTSYRGKNFHPSVEKSRRFYPH 463 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + MDGFF +++L Sbjct: 464 V--------HNMDGFFVAKIKKL 478 >gi|160895962|ref|YP_001561544.1| sun protein [Delftia acidovorans SPH-1] gi|160361546|gb|ABX33159.1| sun protein [Delftia acidovorans SPH-1] Length = 462 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 108/457 (23%), Positives = 176/457 (38%), Gaps = 52/457 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 + L V+ + S +L + V+A++ LR L R A+ Sbjct: 30 AVAQCLQSVL-EGQSSRSVLARVAQPL---------RPGVQALLFQVLRQLGRAQALQKQ 79 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + + P + +L + +V+ VE AK+ R + +N+ LR Sbjct: 80 LASRNPPPRVSALLNTALALAWDESRAPYPPFTLVNQTVEAAKQ-GPTRAQSGFINACLR 138 Query: 130 RVSREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLT-VK 183 R RE+ + + P W+ RL + + P + + + Sbjct: 139 RFLRERDALVAATDDQPQAVWNHPAWWIARLRKDHPDHWQAILQANNEQPPMTLRVNRQQ 198 Query: 184 FDIETWAHKLNA----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-- 237 D +++ L A + + + SLPGF EG+ VQDA+A + L Sbjct: 199 TDRQSYQAALQAMDVPSLAVADSGLQLQQALPVQSLPGFDEGLASVQDAAAQLAAPLLLQ 258 Query: 238 ----GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT----ALDVSKRRLEKLRCNLDRLHLY 289 L VLD CAAPGGKTA L+ A T AL++ R ++ L RL L Sbjct: 259 GLEQPAGRALRVLDACAAPGGKTAHLLEYAAPQTLEVTALEIDAERAARIADTLGRLRLQ 318 Query: 290 A-EDIIEMDAFDYCPKKLF-----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 A + + D DA+L+DAPC+++G +RR PDV W R D+ + A Sbjct: 319 ARVVVADASRPDQWFDAQCGGQRFDAILLDAPCTASGIVRRQPDVRWLRRESDVRQLAEI 378 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL ++PGG +++ CS+ +++ E VQ + + L D Sbjct: 379 QARLLDTLWPLLQPGGRLLYCTCSVFREEGEAQVQAFVTRNSEARTLAAPGHLIPGKADK 438 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A L+ DGFF L++ Sbjct: 439 AGMLADN---------------ALGDHDGFFYALLQK 460 >gi|189348997|ref|YP_001944625.1| Sun protein [Burkholderia multivorans ATCC 17616] gi|189333019|dbj|BAG42089.1| Sun protein [Burkholderia multivorans ATCC 17616] Length = 467 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 101/476 (21%), Positives = 178/476 (37%), Gaps = 57/476 (11%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + + L +R+ +L L + A + + Sbjct: 11 SSGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 69 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV--------SVAQILYLDVA 99 + + T+R L +D ++ ++ + P +++ + Sbjct: 70 ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLACALALLLDADGEAAY-------P 122 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155 + VVD AV +E +VN++LRR RE+ + W+ + Sbjct: 123 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 182 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208 ++ + ++ + L V + L Sbjct: 183 VKRAWPDAWQAILAAGDRQGP-LTLRVNARRTSVDAYLGTLRDNGIEAAAIGRHAVRLAS 241 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267 + +PGFA+GV VQDA A + + G + + LD CAAPGGKT ++ + A+V Sbjct: 242 ALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRALDACAAPGGKTGHILELADAEVV 301 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324 AL+ R ++ NL RL L A D+ D + + FD +L D PCS++G +RR Sbjct: 302 ALESDASRATRIGENLARLSL-AADVRVGDAGAPDAWYDGRPFDRILADVPCSASGIVRR 360 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 HPD+ W R DI QR++L VKPGG +++ CS+ ++ E+ + + Sbjct: 361 HPDIRWLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAAC 420 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L ++ + ++ DGFF ++ Sbjct: 421 EDAVRLDAPGQLLPRAASGGAGSE----------GAAGVPDPTTDHDGFFYARFQK 466 >gi|332876864|ref|ZP_08444618.1| putative ribosomal RNA small subunit methyltransferase B [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685147|gb|EGJ57990.1| putative ribosomal RNA small subunit methyltransferase B [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 398 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 76/445 (17%), Positives = 151/445 (33%), Gaps = 69/445 (15%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 L + + +++ RD+ V + +R+ + + Sbjct: 3 AVIEGLGFIFTENQYADKVVEKLLKKDKRWG--ARDRAFVAETIYDIVRWKRLYAEIAEV 60 Query: 70 VLISSLPRKKYSLQQLLRV-SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + +S+ L R+ +V K ++ Sbjct: 61 Y-------EPFSIHNLRRLFAVW-----------------ATLKGVALPDWGNYFEDTPT 96 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 RR+ + EL + +P+W E G+ + S + L V Sbjct: 97 RRIKGKFDELSKIRKYRESVPDWLDALGEQELGEALWTDELHSLNSLAPVVLRVNTLKIS 156 Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFG- 238 + L + + ++ +I F +G++ VQDAS+ Sbjct: 157 RDRLQQLLREEGVESYPLQQYPDALQLVERSNIFKSQSFKDGLFEVQDASSQKVAPFMQI 216 Query: 239 TLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + ++D CA GGKT L + ++ A+D+ +++L++L+ R + + Sbjct: 217 DNSVKRIIDTCAGAGGKTLHLATLLQNKGQIIAMDIYEQKLQELKRRARRNGAFNIETKL 276 Query: 296 MDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 +D + D VL+DAPCS G +RR+PD W + + + Q+++L Q Sbjct: 277 IDPKQLKRMQGSADRVLIDAPCSGLGVLRRNPDAKWKLQPEFLDQIRTTQQEILQQYSKL 336 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V++ CS+ ++ + V L + +L + Sbjct: 337 LKKGGKLVYATCSVLPSENHQQVATFLASEAGKDFKLEAEEVIFA--------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVAL 438 SG DGF+ L Sbjct: 382 ------------HQSGYDGFYMARL 394 >gi|14591177|ref|NP_143253.1| proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii OT3] gi|3257797|dbj|BAA30480.1| 315aa long hypothetical proliferating-cell nucleolar protein p120 [Pyrococcus horikoshii OT3] Length = 315 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 135/302 (44%), Gaps = 17/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 W + + E+ L + + + + V G L Sbjct: 24 YFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLT 83 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 P SI S P F G+ ++Q+AS+ P V D+ AAPGGKT+ L + + Sbjct: 84 REPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRND 143 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTI 322 + A DV + RL + R NL RL + + + + FD +L+DAPC+ +GTI Sbjct: 144 GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTI 203 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 ++P+ W R DDI Q +LL +G+ +KPGGI+V+S CSL+ +++E V+Q L Sbjct: 204 HKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263 Query: 383 SSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + VEL+PL + LS E R+ PD+ GFF +R Sbjct: 264 NF--DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDV--------HETSGFFIAKIR 313 Query: 440 RL 441 +L Sbjct: 314 KL 315 >gi|291190482|ref|NP_001167121.1| RNA methyltransferase NOL1 [Salmo salar] gi|223648240|gb|ACN10878.1| RNA methyltransferase NOL1 [Salmo salar] Length = 747 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 128/319 (40%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + + ++L + + ++ +A + + A L + Sbjct: 269 STYYSYNNFLIDKLLDIFPVSELIDFLEANEIQRPVTIRTNTLKTRRRDLAQALINRGVN 328 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV +VLD+ +A Sbjct: 329 LDPLGKWSKVGLVIFDSSVPIGATPEYLAGHYMLQGASSFLPVMALSPQEGETVLDMSSA 388 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D S RL+ + N+ RL + I D + F Sbjct: 389 PGGKTTYMAQLMRNTGVIVANDASADRLKSVVGNIHRLGVTNSMICNYDGRQFPKVMGGF 448 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPCS TG I + P V ++D DI++ A Q++L+L I V GG +V+ Sbjct: 449 DRVLLDAPCSGTGVISKDPAVKTSKDESDILRLAHLQKELILAAIDSVNAESPSGGYLVY 508 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 CS+ +++E VV L+ + + L+ + R P + Sbjct: 509 CTCSIMVEENEWVVDYALKKRNVKLVQTGLDFG-------KEGFTRFKERRFHPSLKLSR 561 Query: 422 KIDGVSSGMDGFFAVALRR 440 + S MDGFF L++ Sbjct: 562 RFYPHSHNMDGFFVAKLKK 580 >gi|213405703|ref|XP_002173623.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275] gi|212001670|gb|EEB07330.1| Nop16-like protein NOP2 [Schizosaccharomyces japonicus yFS275] Length = 617 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 128/321 (39%), Gaps = 28/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + E+L + + +A +P + + + A L + Sbjct: 233 CTYYGYSRFLAEKLFEMFPVSEAIEFFEANETPRPMTIRTNTLKTNRRELAQALINRGVN 292 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I ++ + I + P + G + +Q AS+ +PV + +LD+ +A Sbjct: 293 LEPIGKWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMSSA 352 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGK + + + A D +K R++ L N+ RL + + D + + Sbjct: 353 PGGKVTYIAALQKNSGVIFANDSNKARIKALSANIHRLGVRNTIVCNYDGRKFPEEVLGG 412 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD V++DAPCS TG I + V + D QR+LLL I V K GG +V Sbjct: 413 FDRVMLDAPCSGTGVIHKDQSVKANKTAHDFDMLGHLQRQLLLSAIDSVDAESKTGGYIV 472 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--ML 420 +S CS+ + E V+Q L+ P V+LV + + + R P + Sbjct: 473 YSTCSITVDEDEAVIQYALKKRPN-VKLVSTGLEFGR-----EGFTRYREKRFHPSLKLT 526 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + +DGF+ L++L Sbjct: 527 RRYYPHVHNIDGFYVAKLKKL 547 >gi|332159596|ref|YP_004424875.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2] gi|331035059|gb|AEC52871.1| proliferating-cell nucleolar protein p120 [Pyrococcus sp. NA2] Length = 309 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 135/302 (44%), Gaps = 17/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 W + L E+ L + + + + V G L Sbjct: 18 YYQLWGERALRIAEAMEKPLPRCFRVNTLKISIQELTKRLNKKGFQFKRVPWAREGFCLT 77 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 P SI S P F G+ ++Q+AS+ P N V D+ AAPGGKT+ L + + Sbjct: 78 REPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPNEIVADMAAAPGGKTSYLAQLMENK 137 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTI 322 + A DV + RL + R NL RL + + + FD +L+DAPC+ +GTI Sbjct: 138 GIIYAFDVDEDRLRETRLNLSRLGVLNVVLFHSSSLHIDELGVEFDKILLDAPCTGSGTI 197 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 ++P+ W R +DI Q K++ + + +KPGGI+V+S CSL+ +++E V+Q VL Sbjct: 198 HKNPERKWNRTIEDIKFCQGLQMKMIEKALEVLKPGGILVYSTCSLEPEENEFVIQWVLD 257 Query: 383 SSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + VEL+PL + LS E R+ PD + GFF +R Sbjct: 258 NF--DVELLPLKYGEPALTNPFGVELSEEIRNARRLYPD--------THRTSGFFIAKIR 307 Query: 440 RL 441 +L Sbjct: 308 KL 309 >gi|161526289|ref|YP_001581301.1| sun protein [Burkholderia multivorans ATCC 17616] gi|160343718|gb|ABX16804.1| sun protein [Burkholderia multivorans ATCC 17616] Length = 488 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 101/476 (21%), Positives = 178/476 (37%), Gaps = 57/476 (11%) Query: 2 KSGMNARLVSSHL----L----------SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI 47 SG ARL + + L +R+ +L L + A + + Sbjct: 32 SSGRAARLSALRVAPDSLGFALDAAAQAVDAVRRGTALPAALSAVFAQMASGAQALA-RG 90 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV--------SVAQILYLDVA 99 + + T+R L +D ++ ++ + P +++ + Sbjct: 91 ATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLACALALLLDADGEAAY-------P 143 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE----LLQRIAGISIIPEWFKER 155 + VVD AV +E +VN++LRR RE+ + W+ + Sbjct: 144 PFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAMHADPVAQWNYRAWWIDA 203 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKEL 208 ++ + ++ + L V + L Sbjct: 204 VKRAWPDAWQAILAAGDRQGP-LTLRVNARRTSVDAYLGTLRDNGIEAAAIGRHAVRLAS 262 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVT 267 + +PGFA+GV VQDA A + + G + + LD CAAPGGKT ++ + A+V Sbjct: 263 ALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRALDACAAPGGKTGHILELADAEVV 322 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRR 324 AL+ R ++ NL RL L A D+ D + + FD +L D PCS++G +RR Sbjct: 323 ALESDASRATRIGENLARLSL-AADVRVGDAGAPDAWYDGRPFDRILADVPCSASGIVRR 381 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 HPD+ W R DI QR++L VKPGG +++ CS+ ++ E+ + + Sbjct: 382 HPDIRWLRREADIPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGEQQARWFEAAC 441 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L ++ + ++ DGFF ++ Sbjct: 442 EDAVRLDAPGQLLPRAASGGAGSE----------GAAGVPDPTTDHDGFFYARFQK 487 >gi|158292802|ref|XP_314123.4| AGAP005221-PA [Anopheles gambiae str. PEST] gi|157017164|gb|EAA44543.4| AGAP005221-PA [Anopheles gambiae str. PEST] Length = 824 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 133/335 (39%), Gaps = 28/335 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183 R L + + ++F L + +L +A + + Sbjct: 318 PNRSRCEYIDLLRRDLCLYYSYNDFFMGLLMEIFSPNELLEFLEASEIQRPVTIRTNSLK 377 Query: 184 FDIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L G+ + + + P + G + +Q S+ +PV Sbjct: 378 TRRRDLAQALINRGINLDPIGKWSKEGLVVYTSQVPLGATPEYLAGHYMLQGGSSMLPVM 437 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 N +LD+CAAPGGK++ + + + + D +K RL + N RL + Sbjct: 438 ALAPEENERILDMCAAPGGKSSHIAALMKNTGVLFVNDANKERLHAVLGNFHRLGIQNAV 497 Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 I MD Y FD VL+DAPC+ +G I + P V T++ D+ + QR+LLL Sbjct: 498 ITCMDGVKYGNIMKGFDRVLLDAPCTGSGVISKDPSVKATKNEIDVQRCFNLQRRLLLTA 557 Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 I + GG +V+S CS+ Q++E V+ L+ V LVP + + Sbjct: 558 IDCLSASSPTGGYLVYSTCSILPQENEWVIDFALKRR--NVRLVPTGLDFGV-----EGM 610 Query: 408 SPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR 440 + G R P M + + +DGFF L++ Sbjct: 611 TNFGAHRFHPTMKLTRRFYPHTHNLDGFFVAKLQK 645 >gi|11499621|ref|NP_070863.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus fulgidus DSM 4304] gi|2648496|gb|AAB89215.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus fulgidus DSM 4304] Length = 324 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 129/320 (40%), Gaps = 28/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A E+ R + + + I A + + + D + +L + Sbjct: 16 AVKYGYDEFIVRRWLH-FFGDETEDIIRAFEEGIPKYIRINTLKIDEKGLLERLESRGFK 74 Query: 200 ------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + E P SI + P + G ++V D S+ IP V+DL A+PG Sbjct: 75 LKKTEVPYCFEVVEEPYSIGATPEYLMGYYYVMDKSSCIPPLALEPKPGEVVVDLAASPG 134 Query: 254 GKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDA 309 GKT L+ + V A++ K RL+ L N++R+ +I +D D Sbjct: 135 GKTTFLSMLMENKGAVIAVEPQKERLQPLIDNINRMGAMNVAVINVDGRRVPAMGIKADR 194 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC+ G I + P R +DI+ + QR+L+L +K GG++V+S CSL Sbjct: 195 VLLDAPCTGEGIIHKDPSRKTDRGKEDILFCSSLQRELVLAAFDCLKEGGVMVYSTCSLT 254 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++E VV +L VE + + +S R P Sbjct: 255 PEENEFVVDFLLERRKGVVEEIEWGDEALALPGVKNEVSKA--RRFYPH--------RHQ 304 Query: 430 MDGFFAVALRRL----IQPK 445 GFF +R++ +P+ Sbjct: 305 CSGFFVARIRKVGDSKAKPE 324 >gi|327283575|ref|XP_003226516.1| PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Anolis carolinensis] Length = 707 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A ++ ++ + + ++ ++ P + L A L + Sbjct: 277 AAYYSYSDFLIGKMMDLFPLSELVDFLESNEVPRPVTLRTNTLKTRRRDLAQALINRGVN 336 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV N +LD+C A Sbjct: 337 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGQYMLQGASSLLPVMALAPQENERILDMCCA 396 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT+ + + + + A D + RL + NL RL + + D + F Sbjct: 397 PGGKTSYIAQLMKNTGVILANDSNADRLHSVVGNLHRLGVTNTVVSHCDGRQFPKVLGGF 456 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPCS TG I + P V +D DI++ A Q++L+L I V GG +V+ Sbjct: 457 DRVLLDAPCSGTGVISKDPTVKTNKDEKDILRCAHLQKELILSAIDSVNAASETGGYIVY 516 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++E VV L+ V LVP + K + R P + Sbjct: 517 CTCSVMVEENEWVVDYALKKR--NVRLVPTGLDFGK-----EGFTRFKERRFHPSLKSTR 569 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF L++ Sbjct: 570 RFYPHTHNMDGFFVAKLKK 588 >gi|307182612|gb|EFN69780.1| Putative RNA methyltransferase NOL1 [Camponotus floridanus] Length = 696 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 133/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + E+L + + +L +A + + A L + + Sbjct: 377 CTYYSYNNFLMEKLMQIFPLDELLEFLEASEVERPMTIRTNTLKTRRRDLAEALISRGVN 436 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I + + P + G + +Q A++ +PV + N +LD+CAA Sbjct: 437 LDPIGKWTKVGLVVYSSQVPMGATPEYLAGHYIIQGAASFLPVMVLEPRENERILDMCAA 496 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A DV+K RL+ + NL R+ + I D + F Sbjct: 497 PGGKTSHIAALMKNTGILFANDVNKDRLKAVVGNLHRIGVVNSIICNYDGRQFPTIMKGF 556 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 D VL+DAPC+ TG I + V ++ DI + QR+LLL I V GGI+V+ Sbjct: 557 DRVLLDAPCTGTGVIAKDLSVKTNKEEVDIQRCCTLQRELLLAAIDCVNARSETGGIIVY 616 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ +++E ++ L+ V+L+P + A + R P + + Sbjct: 617 STCSILPEENEWIIDYALKKR--NVKLLPTGLEFG-----ADGFTSYRQHRFHPSLKLTK 669 Query: 422 KIDGVSSGMDGFFAVALRR 440 + M GFF L++ Sbjct: 670 RYYPHVHNMYGFFVAKLKK 688 >gi|167521191|ref|XP_001744934.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776548|gb|EDQ90167.1| predicted protein [Monosiga brevicollis MX1] Length = 585 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 126/320 (39%), Gaps = 28/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + ER +G + ++ +A + + A L + Sbjct: 143 CFYYGYNDCMMERFMQLFGLDELIEALEANEVERPVTIRTNTLKTRRRDLAQALINRGVS 202 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + VQ AS+ +PV L N VLD+ AA Sbjct: 203 LDPVGKWSKVGLVIFESSVPIGATPEYLAGHYLVQSASSFLPVMALSPLPNEKVLDMAAA 262 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT + + + V D +K R + L N+ RL I D ++ F Sbjct: 263 PGGKTTHMAAMMKNTGMVVVNDFNKARTKSLFGNIHRLGCTNTVICNYDGREFPKVLGGF 322 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS +G I + P + DD ++ + Q++L+L I V K GG +V+ Sbjct: 323 DRVLLDAPCSGSGVIAKDPGAKNNKSEDDFMRCSTLQKELILSAIDSVDANSKTGGFIVY 382 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR + + L+ + R P + Sbjct: 383 STCSIMVDENESVVDYALRKRNVKLVDTGLDFGRP-------GFTNFRGKRFHPTLEKTR 435 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + + MDGF+ L++L Sbjct: 436 RYYPHAHNMDGFYVAKLQKL 455 >gi|332185131|ref|ZP_08386880.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17] gi|332014855|gb|EGI56911.1| NOL1/NOP2/sun family protein [Sphingomonas sp. S17] Length = 395 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 89/458 (19%), Positives = 153/458 (33%), Gaps = 85/458 (18%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISL----TCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ + L+ + + +D+ VR +V Sbjct: 1 MTP--AARTQAAIELLDAIIASAAAGGAAADTLIARYFATRRYAG--SKDRRAVRELVYA 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R +P + +L ++ DL A Sbjct: 57 AIRQAG------------PVPASGRA--AVLALA---------------DLDPALAVNFD 87 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + H +++ R + P W E L A I Sbjct: 88 GSPHGPAPIDAAEPRAAGGVA------------PAWLVEALGQSGL---TETQQAALIDR 132 Query: 176 LYIDLTVK---FDIETWAHKL-NAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASA 230 +D+ + E + +A P + L+ I + G+ VQD + Sbjct: 133 APLDVRINSLATTREAVLAEWPDATPTPLAPLGLRLPNGTPIEQSDLYRAGLIEVQDEGS 192 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + ++DLCA GGKT Q+ + + + A D+ + RL++L +R Sbjct: 193 QLVGAALAPQPGEWLVDLCAGAGGKTLQIGAAMDNRGALLACDIDRARLQRLAPRAERAG 252 Query: 288 LYAEDIIEMDA-----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + + ++ D VL+DAPCS TGT RR+P+ W + + + Sbjct: 253 VTIVESRLLNPGREREMLSDWIAKADGVLIDAPCSGTGTWRRNPEARWRLTPERLDRLRG 312 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q +++ G VKPGG +V+ CSL + + + L S P P Sbjct: 313 MQAQVMSVGADLVKPGGRMVYVVCSLLDAEGSDQIAAFLESHPGWSVEAPAQVIG----- 367 Query: 403 MAMALSPEGWIRITPD-MLEKIDGVSSGMDGFFAVALR 439 TP ++D + G DGFF LR Sbjct: 368 -------------TPHGTGYRLDPATHGTDGFFVACLR 392 >gi|163741069|ref|ZP_02148461.1| NOL1/NOP2/sun family protein [Phaeobacter gallaeciensis 2.10] gi|161385422|gb|EDQ09799.1| NOL1/NOP2/sun family protein [Phaeobacter gallaeciensis 2.10] Length = 403 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 84/443 (18%), Positives = 146/443 (32%), Gaps = 60/443 (13%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L ++ L S F +D+ VR V LR L A+ Sbjct: 7 RQAAIEILDHIL-TGEPAEKALTAWARRSRFAG--SKDRAAVRDHVFAALRCLRSYAALG 63 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + +Q L + L + D A + V A E A + + Sbjct: 64 GGGGAGEISDSNTTGRQ-LMLGA---LRAEGVDVAEIFNGVGHAPAPLEPAEEAAISTAP 119 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVK-FD 185 + IP+W G A ++ + + D Sbjct: 120 -----------QMQPTEALDIPDWLWPAFAASLGDAAEAAARALQQRAPVHLRVNQRKTD 168 Query: 186 IETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + L+ + + E + + + G+ +QDA++ ++ Sbjct: 169 RDAALIALSEEGILAEAHPAADTALSVTEGARKLRNSSAYLTGLVELQDAASQAVIEALP 228 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + VLD CA GGK+ + G A D++ +R++ L DR A ++ D Sbjct: 229 LADGQRVLDFCAGGGGKSLAIAARGNLAVFAHDIAPQRMKDLPARADRAGA-AITVLAPD 287 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 K FD VL DAPCS +G+ RR P+ W + Q ++L V P Sbjct: 288 DV--AAKAPFDLVLCDAPCSGSGSWRRAPEGKWRLTQARLDDLCQTQAQILHNASRLVAP 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG + ++ CS+ ++ + V L +P L + ++ Sbjct: 346 GGTLAYATCSMLNAENGDQVAAFLARNPNW------------------QLQQDHGWQVH- 386 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 G DGF+ L R Sbjct: 387 ----------GGTDGFYVAVLSR 399 >gi|283856450|ref|YP_163055.2| Fmu (Sun) domain-containing protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775454|gb|AAV89944.2| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 408 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 144/462 (31%), Gaps = 81/462 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ + + L+ + + +D+ +R++V Sbjct: 1 MIP--QARVEAAIELLDQIIQAVRDEGSAADRLISQYFKTRRYAG--SKDRAAIRSLVYR 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R + D ++ + + LL + E AK + Sbjct: 57 AIREIG--DCPINGRAAMIQLAQNDAELALLFDG-----SMRAPAPISDKEFAEAAKISQ 109 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N +P W E++ +A + Sbjct: 110 KNTSL---------------------------LPAWLAEKMAASDIDTA---EQNALLGR 139 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASA 230 +D+ + L A L + P + G +QDA + Sbjct: 140 APLDIRFNPHLTDIDTVLAAFPEGQVISGLPYAVRLPEGTKVDQSPLWKSGAIEIQDAGS 199 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCN 282 + + + V+DLCA GGK A + + A D + RL +L+ Sbjct: 200 QWASSICQAQSGMKVIDLCAGAGGKSLALASDMLANNNAAKLDLIACDTDRNRLSRLQPR 259 Query: 283 LDRLHLYAEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 +R L + ++ D VL+DAPCS +GT RR+P+ W + + Sbjct: 260 AERAKLPPIEQRLLNPKQENKALGDLAHQADLVLIDAPCSGSGTWRRNPEARWRLNPTRL 319 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q LL V+P G +V+ CS+ + + L P P A Sbjct: 320 QRVIDTQSHLLDVASQLVRPNGYLVYVVCSVLDDEGANQITAFLNRHPDWTVENPDIQA- 378 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 G +R + + DGFF LR Sbjct: 379 -------------GCLR---GDGRRFTVLQDKSDGFFVSRLR 404 >gi|39951239|ref|XP_363366.1| hypothetical protein MGG_01292 [Magnaporthe oryzae 70-15] gi|145020894|gb|EDK05023.1| hypothetical protein MGG_01292 [Magnaporthe oryzae 70-15] Length = 678 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 85/366 (23%), Positives = 150/366 (40%), Gaps = 36/366 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D V + A +E R A+ N +L+ + E+ Sbjct: 241 QMLRTRITDTVRVLE--DFANLSEEGRSRAEYSNQLLKDICAY-----------YGYSEY 287 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 ++L + + A +A +P + + ++ A L + + Sbjct: 288 LAQKLMDLFPAREAFAFFEANETPRPVVIRTNTLRTSRRDLAQALVNRGVTLEPVGKWSK 347 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ + + + P + G + +Q AS+ +PV N VLD+ AAPGGKT Sbjct: 348 VGLQIFDSNVPLGATPEYLGGHYILQAASSFLPVMALCPQENERVLDMSAAPGGKTTHCA 407 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPC 316 + + + A D +K R + L N+ RL + + DA + FD VL+DAPC Sbjct: 408 ALMKNTGVIIANDPNKARSKGLIGNIHRLGVKNSIVCNYDAREIPNLIGGFDRVLLDAPC 467 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S TG I + P V + D ++ Q++LLL I K GG +V+S CS+ +++E+V Sbjct: 468 SGTGVISKDPSVKTNKTEKDFMQLPHVQKQLLLAAIDATKVGGYIVYSTCSVTVEENEQV 527 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFF 434 V L VEL+ + K + + P M + + +DGF+ Sbjct: 528 VNYALSRRSN-VELLETGLPFGK-----EGFTSFMGKKFHPSVKMTRRYYPHTYNVDGFY 581 Query: 435 AVALRR 440 ++ Sbjct: 582 VAKFKK 587 >gi|127513667|ref|YP_001094864.1| Fmu (Sun) domain-containing protein [Shewanella loihica PV-4] gi|126638962|gb|ABO24605.1| Fmu (Sun) domain protein [Shewanella loihica PV-4] Length = 475 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 79/450 (17%), Positives = 160/450 (35%), Gaps = 46/450 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV-LDFV 70 L ++ ++ +L + +D+ ++R + R+ + + L Sbjct: 48 HQLFCQTLQSKLPGDRILADYFRAHKKHG--SKDRRVIRETLFGLFRWHGWLKLIPLKDD 105 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA----KRDKENRHFAKLVNS 126 ++ ++ QL + + +V A + ++ Sbjct: 106 SQQAITQQ--WFAQLAMTAALEAH----PWLDIVSAWRGFAELDEPAINAHTDSGSDTDA 159 Query: 127 ILRRVSREKIELLQRIAGISII-PEWFKERLENFYGKERVLAISDACISPLYIDLT---- 181 + + + + ++ ++ + P+WF + + L S + P++ L Sbjct: 160 LKFKQAILEAAFPAQVFPLTALAPDWFWAHFDQDLEIQERLVSSLSSRPPIWGRLQGISL 219 Query: 182 --VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 K + + + I L ++ ++ + EG +QD + + + Sbjct: 220 AKAKAKLAQQEIEASGSDYFKDAINLGHKSINLNAVALYNEGKLEIQDLGSQVIGNICAP 279 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAE 291 + + D C+ GGK+ QL + A D+ ++ LE+L R Sbjct: 280 KADETWWDACSGAGGKSLQLRSLMLQQDSEASGSVVASDIRRKPLEELTKRAKRAGFSQI 339 Query: 292 DIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + FD VLVDAPCS TGT RR+PD+ W D I A Q +L + Sbjct: 340 STQPWQSDALPVAAGYFDGVLVDAPCSCTGTWRRNPDMRWLDDASAITDKASLQLDILSR 399 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 V+PGG++V++ CS+ +++EVV+ L P L L + + Sbjct: 400 ACEAVRPGGVLVYATCSISPVENQEVVEAFLAKRP-DFSLQTLTHPFTNEVTQ------- 451 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 452 -MLTVLP--------YQADSDGMFVAKMIR 472 >gi|315229812|ref|YP_004070248.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] gi|315182840|gb|ADT83025.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] Length = 310 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 28/311 (9%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH----------KLNAVM 197 + F ER +G ER + I++A PL V + V Sbjct: 10 YSKTFAERYYQLWG-ERAIRIAEAMEKPLPRCFRVNTLRTEIPKLTKLLNKKGFQFKRVP 68 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 G L P SI S P + G+ ++Q+AS+ P V D+ AAPGGKT+ Sbjct: 69 WAKEGFCLTREPFSITSTPEYLSGLLYIQEASSMYPPIALEPKPGEVVADMAAAPGGKTS 128 Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313 + + +G + A DV + RL+++R NL RL + + + FD +L+D Sbjct: 129 YMAQLMKNGGIIYAFDVGEERLKEMRLNLSRLGVTNVVVFHKSSLYMGELGIEFDKILLD 188 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC+ +GTI ++P+ R DDI Q K++ + +K GG++V+S CSL+ +++ Sbjct: 189 APCTGSGTIHKNPERKSNRTLDDIKFCQNLQMKMIKVALENLKKGGVLVYSTCSLEPEEN 248 Query: 374 EEVVQKVLRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 E VVQ VL + VEL+PL A K + ++ + R PD G Sbjct: 249 EFVVQWVLDNF--EVELLPLRYGEPALVKPFGIELSEELKKARRFYPD--------KHGT 298 Query: 431 DGFFAVALRRL 441 GFF +R++ Sbjct: 299 SGFFVAKIRKI 309 >gi|302754002|ref|XP_002960425.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii] gi|300171364|gb|EFJ37964.1| hypothetical protein SELMODRAFT_437511 [Selaginella moellendorffii] Length = 579 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 130/323 (40%), Gaps = 32/323 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 A E+ E + + +A +P + L ++T L V++ G Sbjct: 175 ASYYGYNEFLAEYFMQMFPVAEAVEFLEANETPRPLSLRTNT-LKTRRRDLAGVLINRGV 233 Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + + + P + G + +Q AS+ +PV ++D+ A Sbjct: 234 NLDPIGKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQEKERIVDVAA 293 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---K 304 APGGKT + + + + A ++ +RL+ L N+ R+ + + D + + Sbjct: 294 APGGKTTYIAALMKNTGLIYANELKVQRLKSLTANIYRMGVTNSVVCNYDGRELPKVLGR 353 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGI 360 D VL+DAPCS TG + + V T+ +DI + A Q++L+L I V GG Sbjct: 354 NSVDRVLLDAPCSGTGIVGKDQSVKLTKSLEDIQRCAFLQKELILAAIDLVDANSSSGGY 413 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM- 419 +V+S CS+ ++E VV L+ + V L I R P + Sbjct: 414 LVYSTCSVTVAENEAVVDYALKKRHVKVVPSGLEFGKEGFIRFREK-------RFHPSLA 466 Query: 420 -LEKIDGVSSGMDGFFAVALRRL 441 + MDGFF L++L Sbjct: 467 NTRRFYPHVHNMDGFFVAKLKKL 489 >gi|326436780|gb|EGD82350.1| hypothetical protein PTSG_03014 [Salpingoeca sp. ATCC 50818] Length = 880 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 24/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV------ 196 E +RL + + ++ +A + + + A+ Sbjct: 299 CTYYGYNECMMQRLMDLFPLNELVDALEANEVRRPVTIRTNTLRTRQRDLMQALSNRGVS 358 Query: 197 -----MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + E I + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 359 LDSVGNWSKVGLVVFESNVPIGATPEYLCGHYIIQSASSFLPVMALAPQPNERVLDMAAA 418 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D +K R++ L N+ RL + + D + F Sbjct: 419 PGGKTTYIAALMKNTGVLFANDANKARIKSLAANISRLGVTNTVVCNYDGRSFPTVIGGF 478 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D +L+DAPCS +G I + T+D D + + Q++L+L I V K GG +V+ Sbjct: 479 DRILLDAPCSGSGVISKDASAKNTKDETDFRRCSTLQKELILAAIDSVDANSKTGGYIVY 538 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS+ ++EEVV LR + + L P+ + + Sbjct: 539 STCSIMVDENEEVVNYALRKRNVKLVDTGLTFGRPGFKSYRGKHFPDTM-----QLTRRF 593 Query: 424 DGVSSGMDGFFAVALRRL 441 MDGFF L++L Sbjct: 594 YPHVHNMDGFFVAKLKKL 611 >gi|159044194|ref|YP_001532988.1| rRNA (cytosine-C(5)-)-methyltransferase [Dinoroseobacter shibae DFL 12] gi|157911954|gb|ABV93387.1| rRNA (cytosine-C(5)-)-methyltransferase [Dinoroseobacter shibae DFL 12] Length = 392 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 81/420 (19%), Positives = 137/420 (32%), Gaps = 50/420 (11%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L + S L F +D+ +R +V LR Sbjct: 1 MTP--AARVQGAIEILEAYL-SGQSAEQALSRWCRSHRFAG--SKDRAALRDLVFDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + L V L A D N Sbjct: 56 RASYAWLGGGLSARG-----------LMVGA-----LRK---------RGLAPEDLFNGQ 90 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +++ +P W +L++ +G E L + A +D Sbjct: 91 TYAPFPVTGDEIAQFGQAENMPDDVALDMPGWLFAQLQDSFG-EAALGVCAALQQRAPVD 149 Query: 180 LTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 L V + A V +R+ E S+V F +G+ +QDA+ Sbjct: 150 LRVNTLKASVGQAEEALYEDGIATERVAGVATALRVVEGARSVVRSRAFTDGLVELQDAA 209 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHL 288 + + V + +LD CA GGK L D + +R+ L R Sbjct: 210 SQLAVLRSPVPHKGRILDFCAGGGGKALALAAGSGGCIHVHDANLKRMRDLPDRAARAGA 269 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD V DAPCS +GT RR P+ WT D + + QR +L Sbjct: 270 D------LRMWNRAEARAFDLVFCDAPCSGSGTWRRSPEAKWTLTPDRLAEYVATQRTVL 323 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 V+PGG +V++ CS+ ++ L++ P L+ + ++ Sbjct: 324 TAAAPLVRPGGFLVYATCSILTVENAAQTAWFLQAFP-AFSLLEASQMLPENPGDGFYFG 382 >gi|171696268|ref|XP_001913058.1| hypothetical protein [Podospora anserina S mat+] gi|170948376|emb|CAP60540.1| unnamed protein product [Podospora anserina S mat+] Length = 747 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 139/362 (38%), Gaps = 22/362 (6%) Query: 92 QILYLDVADYAVVDLAV-EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI-IP 149 Q+L + + V E A+ R A+ N +L+ V + P Sbjct: 235 QMLRTRITETIRVLEDFGELAEE---GRDRAEYTNQLLKDVCAYYGYNEFLAEKLMNLFP 291 Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 R + I + DL + G + + Sbjct: 292 PREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQ-VFDSN 350 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKV 266 + + P + G + +Q AS+ +PV N LD+ +APGGKT + + + + Sbjct: 351 VPLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMASAPGGKTTHMAALMKNTGVI 410 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRH 325 A D SK R + L N+ RL + + DA ++ FD VL+DAPCS TG I + Sbjct: 411 FANDPSKARAKGLIGNIHRLGVRNTIVCNYDAREFPRVMGGFDRVLLDAPCSGTGVIAKD 470 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVL 381 P V RD D + Q++L+L I V K GG +V+S CS+ +++E+VV L Sbjct: 471 PSVKTNRDEKDFQQLPHLQKQLILAAIDSVNHASKTGGYLVYSTCSVAVEENEQVVAYAL 530 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALR 439 P V LV + K + P + + +DGFF + Sbjct: 531 SRRPN-VRLVETGLPFGK-----EGFTSFMGKEFHPSLKLTRRYYPHLYNVDGFFVAKFQ 584 Query: 440 RL 441 ++ Sbjct: 585 KI 586 >gi|242010929|ref|XP_002426210.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus humanus corporis] gi|212510261|gb|EEB13472.1| Proliferating-cell nucleolar antigen p120, putative [Pediculus humanus corporis] Length = 730 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 24/338 (7%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 K R+ L + + E+ E+ N + +L +A + + Sbjct: 196 KKFRDENRKRQDYIDLLKRDLCSYYSYNEFLMEKFMNLFELNELLEFLEASEVHRPVTIR 255 Query: 182 VK---FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230 A L + + I + P + G + +Q AS+ Sbjct: 256 TNSLKTRRRDLAQALINRGVNLDPLGKWTKVGLVIFSSQVPIGATPEYLAGHYLIQGASS 315 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +PV N +LD+C+APGGK + + + + + A DV+ R + N RL Sbjct: 316 LLPVMALAPRENERILDMCSAPGGKGSHIAAVMKNTGVLVANDVNADRNRAVVGNFHRLG 375 Query: 288 LYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + I D FD VL+DAPC+ TG + + P V ++D DI + Q++ Sbjct: 376 VSNSIICSYDGRKLPTVLKGFDRVLLDAPCTGTGVVAKDPTVKTSKDEKDIQRCINLQKE 435 Query: 347 LLLQGISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 L+L I + P GG +V+S CS+ +++E VV+ L+ V+LVP + + Sbjct: 436 LILAAIDCLNPNSASGGYLVYSTCSVLVEENECVVEYALKKR--DVKLVPTGLEFGEQGF 493 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + T ++ + S MDGFF L++ Sbjct: 494 VNFRGNR---FHSTMNLTRRYYPHSHNMDGFFVAKLKK 528 >gi|255563570|ref|XP_002522787.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus communis] gi|223538025|gb|EEF39638.1| Proliferating-cell nucleolar antigen p120, putative [Ricinus communis] Length = 624 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 132/335 (39%), Gaps = 30/335 (8%) Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 R +L + ++ L + ++ + +AC P I L Sbjct: 187 RRKDYVEQLKMDLCSYYGYNDFLIGVLVEMFPVNELIELIEACEKPRPICLRTNTLKTRR 246 Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFG 238 A L + + I + P + G + +Q A++ +PV Sbjct: 247 RDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSANSFLPVMALA 306 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 ++D+ AAPGGKT + + + + A ++ RL+ L NL R+ + + Sbjct: 307 PQEKERIVDMAAAPGGKTTYIAALMKNSGIIYANEIKVPRLKSLTANLHRMGVTNTIVCN 366 Query: 296 MDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + D VL+DAPCS TG I + V ++ DDI K A Q++L+L I Sbjct: 367 YDGRELIKILGHNAVDRVLLDAPCSGTGVISKDESVKTSKSLDDIQKCAHLQKQLILAAI 426 Query: 353 SFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 V K GG +V+S CS+ ++E V+ L+ V+LVP + + + Sbjct: 427 DMVDANSKSGGYIVYSTCSMMVAENEAVIDYALKKR--DVKLVPCGLDFGRPGFIRFREH 484 Query: 409 PEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRL 441 R P + + MDGFF L+++ Sbjct: 485 -----RFHPSLEKTRRFYPHVHNMDGFFVAKLKKM 514 >gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221] gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221] Length = 421 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 157/383 (40%), Gaps = 23/383 (6%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++ L+ + LL+ +S++ + + +R R A L Sbjct: 18 LAVQLMEAYLSADNKADWLLEQL-----PDSISRQIRAASQTRFYGAIRHGHRCRAALKP 72 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L ++ +L V+ A+I +V AV++AK+ ++ L+N++LR Sbjct: 73 HLRKQPR---PRVEAILLVAGAEICTEAEKAPKIVHHAVDRAKQLVKSGEL-GLINALLR 128 Query: 130 RVSREKIELLQRIAGISI-IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 ++ + P W +R +G E + + L + + Sbjct: 129 KLPGLLDAQSANDPLSNWSHPSWLVQRWNQEFGSEHCQQLLEWNQQIPQNYLKLYQGTDA 188 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 L +PE + + G+ +++D S + +L +LDL Sbjct: 189 ---GLPESQWSPFYKLDGPVPEPLKA--ELNRGLAYIKDPSTRLAPELLAPKAGDRILDL 243 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR-----LHLYAEDIIEMDAFD 300 CAAPGGK L + ++TA+D+ R+ +LR NL + + ++ Sbjct: 244 CAAPGGKAFDLAKLMQGRGQLTAIDLPGSRINRLRENLAKLESEDFQTEIIEEDVLELNR 303 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD V++DAPCS+TG I+R DV W DI A Q +LL FVK GG Sbjct: 304 EQLPAPFDCVMLDAPCSNTGVIQRRIDVKWRLRQKDITACAKLQLQLLHSASRFVKNGGR 363 Query: 361 VVFSNCSLDKQDSEEVVQKVLRS 383 +V+S CS++ +++ EV+ K L S Sbjct: 364 LVYSTCSIEHEENTEVIDKFLAS 386 >gi|241761711|ref|ZP_04759798.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374019|gb|EER63552.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 408 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 81/467 (17%), Positives = 146/467 (31%), Gaps = 91/467 (19%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ + + L+ + + +D+ +R++V Sbjct: 1 MIP--QARVEAAIELLDQIIQAVRDEGSAADRLISQYFKTRRYAG--SKDRAAIRSLVYR 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-----LDVADYAVVDLAVEQ 110 +R + + + +Q L + A++ + + E Sbjct: 57 AIREIGDC----------PINGRAAMIQ--LAQNDAELAFLFDGSMRAPAPISDKEFAEA 104 Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 AK ++N +P W E++ + Sbjct: 105 AKISQKNTSL---------------------------LPAWLAEKMAASDIDTA---EQN 134 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWV 225 A + +D+ + L A L + P + G + Sbjct: 135 ALLGRAPLDIRFNPHLTDIDTVLAAFPEGQVISGLPYAVRLPEGTKVDQSPLWKSGAIEI 194 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLE 277 QDA + + + V+DLCA GGK A + + A D + RL Sbjct: 195 QDAGSQWASSICQAQLGMKVIDLCAGAGGKSLALASDMLANNNAAKLDLIACDTDRNRLS 254 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 +L+ +R L + ++ D VL+DAPCS +GT RR+P+ W Sbjct: 255 RLQPRAERAKLPPIEQRLLNPKQEEKALGDLAHQADLVLIDAPCSGSGTWRRNPEARWRL 314 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + + Q LL V+P G +V+ CS+ + + L P P Sbjct: 315 NPTRLQRVIDTQSHLLDVASQLVRPNGYLVYVVCSVLDDEGANQITAFLNRHPDWTVENP 374 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 A G +R + + DGFF LR Sbjct: 375 DIQA--------------GCLR---GDGRRFTVLQDKSDGFFVSRLR 404 >gi|255020224|ref|ZP_05292293.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus caldus ATCC 51756] gi|254970366|gb|EET27859.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus caldus ATCC 51756] Length = 443 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 153/357 (42%), Gaps = 41/357 (11%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI-IPEWFKERLE 157 D+AVV+ V A LVN++LRR RE+ L ++I P+W RL+ Sbjct: 91 PDFAVVNDWVG-ACALLHKEWARGLVNALLRRYLREREPLEEQIRDAHWNHPQWLVRRLQ 149 Query: 158 NFYGKERVLAISDACISPL-YIDLTVK-FDIETWAHKLNAVMLPTGGIR------LKELP 209 Y + ++ ++ + + +A +L LP + Sbjct: 150 QVYPTQWPDILAANLREAPLWLRVNPQAITPAAYAERLAEASLPAQSHAGLPEALRLDTA 209 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-A 268 + +LPG+ G +QD +A + + VLD CAAPGGKT L+ G + A Sbjct: 210 VPVRALPGWERGWVSIQDGAAQRAAHILAPRPDERVLDACAAPGGKTTHLLSFGVRQLTA 269 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 LD S+ RLE+LR L RL L + D + +FDA+L+DAPC+++G IRRH Sbjct: 270 LDRSQARLERLRRELQRLQLPLPSLHVADAADVDAWWDGMVFDAILLDAPCTASGVIRRH 329 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+L R DD+ + QR+LL +KPGG +++ CS+ +++ E + L Sbjct: 330 PDILLRRREDDVERVRHEQRRLLAALWRVLKPGGRLLYCTCSVLPEENGEQIASFLEEHD 389 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPD-MLEKIDGVSSGMDGFFAVALRRL 441 R P + GMDGFF L ++ Sbjct: 390 DA--------------------------RALPHPQCGQRLPGEEGMDGFFYALLGKI 420 >gi|288932371|ref|YP_003436431.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] gi|288894619|gb|ADC66156.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] Length = 328 Score = 157 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 21/311 (6%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT-VKFDIETWAHKLNAVMLPT 200 A E+ R N +G+E + + YI + +K + +L Sbjct: 16 AKKYGYDEFIIRRWVNIFGEEEAAKLVEGMEKVPKYIRVNTIKISEDELVERLEERGFVL 75 Query: 201 GGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + E SI + P F G ++V D S+ IP + V+D+ A+PGG Sbjct: 76 NKTEVPFCYEVVEEPYSIGATPEFLMGYYYVMDKSSCIPPIELNPKESDLVVDMAASPGG 135 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAV 310 K + + + + A++ ++ R+ L N+ R+ + ++ M++ + D + Sbjct: 136 KATMISMLMKNKGVLIAIEGNEERIPPLIDNIHRMGVMNAIVLRMNSAKFHNLGIKADKI 195 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPC+ G I + P W+R DI+ Q+++L GI +KPGG++++S CSL Sbjct: 196 LLDAPCTGEGIIHKDPTRKWSRGVKDILFCTSLQKQMLEAGIKSLKPGGVLIYSTCSLTP 255 Query: 371 QDSEEVVQKVLRSSPIPVELVPL-NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++E V+ L++ I +E V A K D+ ++ R+ P Sbjct: 256 EENEFVIDWALKNFEIRLEEVKFGEEALTKIGDVKLSSELRKAKRLYPHKHRCS------ 309 Query: 430 MDGFFAVALRR 440 GFF + + Sbjct: 310 --GFFVAKIVK 318 >gi|326387633|ref|ZP_08209239.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370] gi|326207679|gb|EGD58490.1| Fmu (Sun) [Novosphingobium nitrogenifigens DSM 19370] Length = 393 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 102/454 (22%), Positives = 160/454 (35%), Gaps = 78/454 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + +L V+ R+ S + + F + +D+ +R + Sbjct: 1 MNP--AARVQAAIDILDEVIAAARRQGASADRIAAEWFRQRRF--VGSKDRRAIRDLAWD 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R I + +LR++ Sbjct: 57 AIRACGDI----------PADGRA----AILRLA-------------------------S 77 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACI 173 N + L + R I+ +R A + P W RL +E+ + A + Sbjct: 78 GNADLSALFDG--SRYGPAPIDPSERPASGGVAPGWLVRRLTQSGLDEREQAALLDRAPL 135 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 L V D + A P S P FAEG++ VQDA + + Sbjct: 136 DLRVNRLKVTRDALLARLPVAAEPGPVPDSLRLASGTPAESWPEFAEGLFEVQDAGSQLA 195 Query: 234 VQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 +V+DLCA GGKT A + + ++ A D+ + RL +L R Sbjct: 196 CTALHAQPGETVIDLCAGAGGKTLALAAAMENRGRLVACDIDRARLSRLPERAARAGAT- 254 Query: 291 EDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +DA DAVLVDAPCS TGT RR+P+ W + IV+ A Q Sbjct: 255 VETCLLDAGREREALRGFAGKADAVLVDAPCSGTGTWRRNPEARWRLTPETIVRYARAQA 314 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +L + V+PGG + F CSL ++ + V L P VP+++ + Sbjct: 315 HVLDLAVELVRPGGRITFITCSLLDEEGADAVGAFLARYPGW-RTVPVDAPIGRGHGPGW 373 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 R+TP G DGF+ L Sbjct: 374 --------RLTPGH--------DGTDGFYFANLV 391 >gi|282891959|ref|ZP_06300438.1| hypothetical protein pah_c200o131 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498219|gb|EFB40559.1| hypothetical protein pah_c200o131 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 384 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 79/443 (17%), Positives = 150/443 (33%), Gaps = 91/443 (20%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LL M + + L ++ + L +D+ V + +R++ ID + Sbjct: 13 FSLLDFYMEQELPLDLVISRYFKLRK--SLGSKDRAFVAEAIYGMMRWITLIDFFCEENA 70 Query: 72 ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 +I LD+ Sbjct: 71 SWEKK--------------WEIYQTLDIP------------------------------- 85 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIE 187 + P+ + + +G E+ I A +P + V D E Sbjct: 86 --TLIKDTSIPEHIRFGFPKDLYDLILKSHGIEKGQEICLASNAPAPTTVRVNLLKTDRE 143 Query: 188 TWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 T + + + R + + LP F +G++ VQD + + +L Sbjct: 144 TLLSQWSEKYQISACSRSSTGIVFHKKINFFELPEFRQGLFEVQDEGSQLISELMQVEPG 203 Query: 243 LSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLD C+ GGK A + ++ D+ K+ L + + L R + I+ D Sbjct: 204 QQVLDYCSGSGGKTLAFAPKMEKRGQIFLHDIRKKILLEAKKRLRRAGVQNSQIVNPDDE 263 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 K D VL D PCS GT+RR+PD+ W + + + QR + + +S++KP Sbjct: 264 PKLKKLKKQMDWVLADVPCSGIGTLRRNPDMKWKFSEEMLTRLVGQQRTIFEKALSYMKP 323 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G +V++ CS+ +++++ + +++ + + Sbjct: 324 EGHIVYATCSILNEENQQQIDHFVKTYDLEIV---------------------------- 355 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + MDGFFA LR+ Sbjct: 356 GETFQSIPHEGRMDGFFATVLRK 378 >gi|167464610|ref|ZP_02329699.1| 16S rRNA m(5)C 967 methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 271 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 70/270 (25%), Positives = 121/270 (44%), Gaps = 22/270 (8%) Query: 184 FDIETWAHKLNAVMLPTG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 E +L + + ++ +A G + +QD S+ + +L Sbjct: 11 HCREELIERLLDEGIQAEASFLAPQGIIITGGGNMALTKEYANGDYSIQDESSMLVAELV 70 Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + VLD CAAPGGKT + + V A D+ + + + ++ +RL L + + Sbjct: 71 DPKEGMIVLDCCAAPGGKTTHLAEKMNNKGIVKAFDLYEHKEQLIQEQAERLQLTSVETA 130 Query: 295 EMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA + FD +L+DAPCS G IRR PD+ W + DI + Q+ LL Sbjct: 131 VADARKLGERFNRETFDRILLDAPCSGLGVIRRKPDLKWMKKEQDIEEIRKVQQDLLCAV 190 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +KPGGI+V+S C+++ ++E+ V + L P + ++ + ++ + L G Sbjct: 191 PGLLKPGGILVYSTCTVEIAENEDQVNRFLEKHPDFIPVLEPVPGWPP--ELNVQLMNRG 248 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P + DGFF V LR+ Sbjct: 249 MVQIFPQDYQS--------DGFFMVRLRKK 270 >gi|195442109|ref|XP_002068802.1| GK17973 [Drosophila willistoni] gi|194164887|gb|EDW79788.1| GK17973 [Drosophila willistoni] Length = 866 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 76/376 (20%), Positives = 147/376 (39%), Gaps = 35/376 (9%) Query: 92 QILYLDVADYA-----VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGIS 146 +I L + + +++ K K R S L + Sbjct: 253 EIFQLPSPEDDEEKDLTIQEVMQRIKDVTLVLSDFKKYRQADRARSEYIDLLRHDLCLYY 312 Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--- 203 E+ E+L + + ++ +A + + ++T L ++ G Sbjct: 313 SYNEFLMEKLMDMFPLNELMEYLEASEVARPLTIRTN-SLKTRRRDLAGALINRGVNLDP 371 Query: 204 ---------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + + P + G + +Q AS+ +PV N +LD+C+APGG Sbjct: 372 LGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSMLPVMALAPQENERILDMCSAPGG 431 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310 K + + + + + A D ++ R++ + N RL + + D + FD V Sbjct: 432 KGSHIAAIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGFDRV 491 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNC 366 L+DAPC+ TG + + P V T+ D+ + QRKLLL I V GG +V+S C Sbjct: 492 LLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSSGGYIVYSTC 551 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKID 424 S+ +++E V+ L+ + + L+ ++ R P ++ + Sbjct: 552 SVLPEENEWVIDYALKKRNVKLVPTGLDFGVEGFVNFRQH-------RFHPSLNLTRRYY 604 Query: 425 GVSSGMDGFFAVALRR 440 + MDGF+ L++ Sbjct: 605 PHTHNMDGFYVAKLKK 620 >gi|67902172|ref|XP_681342.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4] gi|40740505|gb|EAA59695.1| hypothetical protein AN8073.2 [Aspergillus nidulans FGSC A4] gi|259480830|tpe|CBF73828.1| TPA: nucleolar RNA methyltransferase (Nop2), putative (AFU_orthologue; AFUA_5G01760) [Aspergillus nidulans FGSC A4] Length = 788 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 23/319 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 280 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 339 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+ +A Sbjct: 340 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERILDMASA 399 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK + Sbjct: 400 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKAMGG 459 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V ++ D + QR+LLL I V K GG +V Sbjct: 460 FDRVLLDAPCTGTGVIAKDPSVKTNKNERDFLAIPHMQRQLLLAAIDSVNHASKTGGYIV 519 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VL+ P V+LV + S + ++T M + Sbjct: 520 YSTCSVTVEENEAVVQYVLKKRPN-VKLVETGLGDFGSPGFTHYMGKHFDAKMT--MTRR 576 Query: 423 IDGVSSGMDGFFAVALRRL 441 +DGFF L+++ Sbjct: 577 YFPHRENVDGFFVCKLKKI 595 >gi|297621733|ref|YP_003709870.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia chondrophila WSU 86-1044] gi|297377034|gb|ADI38864.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia chondrophila WSU 86-1044] Length = 393 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 90/440 (20%), Positives = 145/440 (32%), Gaps = 88/440 (20%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LL + I L + + ++ L +D+ + + +R+LP I+ + Sbjct: 28 LRLLKSYEGQEIPLDLCIHRYFKENR--SLGSKDRAEIAENIYGMIRWLPLINHLSGTHS 85 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 R + Sbjct: 86 SWE-KRLETW---------------------------------------------TGLNP 99 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 + P+ + GKE+ I C SP + V T Sbjct: 100 EEYRHNSSIPSHIRYSFPKVLYDLCVAAMGKEKAEEICWECNSPAPTTVRVNRLKATRDK 159 Query: 192 KLNAVMLPTGGIRLKELPESIV--------SLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L +E E I LP F G + VQD + + + L Sbjct: 160 LLKTWGKEYQVAPCEEAKEGIRFLKKINFFQLPEFQSGYFEVQDEGSQLLAAMVEALPGQ 219 Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAF 299 VLD C+ GGK AQ + ++ D+ L + + L R + + + D Sbjct: 220 KVLDYCSGSGGKTLAFAQNMDGKGQIYLHDIRTHILSEAKRRLKRAGIQNAQLLMPDDPK 279 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 KK FD VLVDAPCS TGT+RR+PD+ W + + + QR + Q +S+VKPGG Sbjct: 280 KKNLKKKFDWVLVDAPCSGTGTLRRNPDMKWKFSEEMLKRLLGQQRTIFEQALSYVKPGG 339 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CS+ KQ++++ V L + PI + Sbjct: 340 KIVYGTCSILKQENQDQVAHFLNTYPIKLH----------------------------GD 371 Query: 420 LEKIDGVSSGMDGFFAVALR 439 + + MDGFF + Sbjct: 372 IFQSYPAREKMDGFFGACFQ 391 >gi|325115470|emb|CBZ51025.1| ribosomal RNA small subunit methyltransferase F (RRNA(Cytosine-C)), related [Neospora caninum Liverpool] Length = 803 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 74/356 (20%), Positives = 130/356 (36%), Gaps = 26/356 (7%) Query: 112 KRDKENRHFAKLV-NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 +++ N+ + + + +L I E + + A + Sbjct: 245 RKNLGNQRSKDTDADGGVVTRRQLMDKLAADIVTYYQYRPELVEYFLQLFKPQEAYAFFE 304 Query: 171 ACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFA 219 A + L A L A + + + P + Sbjct: 305 ANEENRPMTLRTNSLKTRRRDLAAALIARGCNVDPLGDWTKVGLKVYESSVPVGATPEYL 364 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276 G + +Q A++ IPV V+D+ AAPGGKT + + + A D K R Sbjct: 365 AGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPGGKTTYIAQLLKNEGILFANDAKKERC 424 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL RL + + +D D L+DAPC+ +G I R P + R + Sbjct: 425 TSLMANLHRLGVTNCIVSCVDGRTLPTILPPMDRALLDAPCTGSGIIARDPSIKVKRKPE 484 Query: 336 DIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 D + + Q++LL + V GG +V+S CS+ +++E+VV +L + V+LV Sbjct: 485 DFAEHSKLQKQLLCAAVDAVNADSPTGGYIVYSTCSISVEENEQVVDYILTARK--VKLV 542 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI--QPK 445 PL + + P + + DGFF ++L +P+ Sbjct: 543 PLGVDI--GVPGLSGFRGRQFHHSIPLYTRRFYPHVNNFDGFFVAKFKKLSNKKPE 596 >gi|284161602|ref|YP_003400225.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] gi|284011599|gb|ADB57552.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] Length = 321 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 129/314 (41%), Gaps = 23/314 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A E+ R NF+G E + + +A + + V D +L Sbjct: 15 AKRYGYNEFIVRRWINFFGFEETVKLIEAMERGIPKHIRVNTIKIDENDLIERLRERGFK 74 Query: 200 TG------GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 ++ E P SI + P + G ++V + S+ IP + +N V D +APG Sbjct: 75 LEKTEVPFCYKVVEEPYSIGATPEYLMGYYYVMEKSSCIPPLVLNPKSNELVADFASAPG 134 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDA 309 GKT L + + + A++ +K R++ L N+ R+ + +I M+ D Sbjct: 135 GKTTFLAQLMNNRGVLIAIEANKERIQALIDNIHRMGVLNTAVIHMNAVRFCNLGLKVDK 194 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G I + D DI + Q++L+ + +KPGG++V+S C+L Sbjct: 195 ILLDAPCSGEGVIHKDKDRKRVSGRKDIEFCSKLQKELVESALKSLKPGGVLVYSTCTLA 254 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVS 427 +++E V+Q VL + + + I L + R P Sbjct: 255 PEENELVIQYVLDRFEVEIGEIEWGEPALTEIPNFGKLDKDIAKCRRFYPH--------K 306 Query: 428 SGMDGFFAVALRRL 441 GFF + ++ Sbjct: 307 HESSGFFVAKIVKV 320 >gi|19113319|ref|NP_596527.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe 972h-] gi|74582834|sp|O94268|NOP2_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase nop2; AltName: Full=Nucleolar protein 2 gi|3810844|emb|CAA21805.1| RNA methyltransferase Nop2 (predicted) [Schizosaccharomyces pombe] Length = 608 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 133/337 (39%), Gaps = 28/337 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 R S +LL I + E+L + + +A P + + Sbjct: 214 PGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELFSVSEAVEFFEANEMPRPVTIRTNTLK 273 Query: 185 -DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L + I ++ E I + P + G + +Q AS+ +PV Sbjct: 274 TQRRELAQALINRGVNLEPIGKWSKVGLQVFESQVPIGATPEYLAGHYILQAASSFLPVM 333 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 N +LD+ +APGGK + + + A D +K R + L N+ RL + Sbjct: 334 ALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNKARTKALSANIHRLGVRNAI 393 Query: 293 IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D + + + FD VL+DAPCS TG I + V + D + QR+LLL Sbjct: 394 VCNYDGRKFPNEVIGGFDRVLLDAPCSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLS 453 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG +V+S CS+ + E V+Q L+ P V+LV + + Sbjct: 454 AIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKKRPN-VKLVSTGLEFGR-----EG 507 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + R P + + +DGFF L+++ Sbjct: 508 FTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKI 544 >gi|24373145|ref|NP_717188.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella oneidensis MR-1] gi|24347347|gb|AAN54632.1|AE015603_6 NOL1/NOP2/sun family putative RNA methylase [Shewanella oneidensis MR-1] Length = 486 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 80/447 (17%), Positives = 151/447 (33%), Gaps = 50/447 (11%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 ++ + +L + + +D+ ++R + R+ A D Sbjct: 68 DEILSAKQPADRVLANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFKAAGDH------ 119 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSR 133 ++ +L S L + E ++ + + + N + Sbjct: 120 -QQAAHFFAMLSASA---LLEAHPWQDIAQAWHELSQSTHDYQRLQSIPVNNLTDKLALV 175 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-- 191 ++ + ++PEWF + + L + + P++ + Sbjct: 176 RQLFPQVVLELTDLLPEWFWQVCPIDAKRRPNLIEAMSSRPPIWGRAQSINSQTAVSQLQ 235 Query: 192 ----KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + I L ++ + + EG +QD ++ + Q+ D Sbjct: 236 ALGIEASLSPFFEDAINLGSKSMNLNEITLYKEGNIEIQDLASQVIGQICAPEPWQHWWD 295 Query: 248 LCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 C+ GGKT Q + + D+ LE+L R I Sbjct: 296 ACSGAGGKTLQLRSLMQTAATKQHTPLQGSIVSSDIRANALEELSKRAQRAQFDGISIAR 355 Query: 296 MDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + FD VLVDAPCS TGT RR+PD+ W D ++ A Q +L + Sbjct: 356 WRSDALPVAANYFDGVLVDAPCSCTGTWRRNPDMRWLDTLDAVMDKATLQLDILSRSSQA 415 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GG ++++ CSL ++EEVV L+ P LVP+ + + Sbjct: 416 VKAGGTLIYATCSLSPVENEEVVSAFLQQHP-EFNLVPIRHPFTGEQTE--------MLT 466 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P + DG F ++R Sbjct: 467 VWP--------FEANTDGMFVARMQRK 485 >gi|170049385|ref|XP_001855854.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus] gi|167871246|gb|EDS34629.1| proliferating-cell nucleolar antigen p120 [Culex quinquefasciatus] Length = 794 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 135/335 (40%), Gaps = 30/335 (8%) Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---F 184 R S L + + E+F + L + +L +A + + Sbjct: 279 NRSRSEYMELLQKDLCLYYSYNEFFMQLLIKLFSPNELLEFLEASEVQRPLTIRTNSLKT 338 Query: 185 DIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 A L G+ + + + P + G + +Q AS+ +PV Sbjct: 339 RRRDLAQALINRGVNLDPIGKWSKEGLVVYSSQVPLGATPEYLAGHYMIQGASSMLPVMA 398 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 N +LD+CAAPGGK++ + + + + A DV+K RL+ + N RL + + Sbjct: 399 LAPEENERILDMCAAPGGKSSHIAALMRNTGVLFANDVNKDRLQAVVGNFHRLGIQNAIV 458 Query: 294 IEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D Y FD VL+DAPC+ +G I + P V T+ DI + QRKLLL I Sbjct: 459 TSEDGTKYRDIMTGFDRVLLDAPCTGSGVISKDPSVKTTKTEIDIQRCYNLQRKLLLTAI 518 Query: 353 SFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM---AM 405 + + GG +V+S CS+ Q++E V+ LR + + L+ ++ Sbjct: 519 DCLSANSETGGYLVYSTCSILPQENEWVIDYALRKRNVKLVPTGLDFGAEGLVNFCGQKY 578 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S + R P MDGFF L++ Sbjct: 579 HPSMKLTRRFYPHTF--------NMDGFFVAKLQK 605 >gi|302335853|ref|YP_003801060.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084] gi|301319693|gb|ADK68180.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084] Length = 484 Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 97/484 (20%), Positives = 163/484 (33%), Gaps = 59/484 (12%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 AR V+ LL + LL A L +RD+ L +V + +D Sbjct: 15 TPARRVAVRLLRDQRVRDGRSRELLR---SSDALSALDERDRALATRLVLGVVASRGALD 71 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK-- 122 A +D L + ++ LR++ +++YLD A V VE + Sbjct: 72 AAIDSHL-RPHSHLEPKVRDALRLASFELMYLDTPPSAAVSQGVELVRLASRRAAALANA 130 Query: 123 ----------LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 + R L+ +A + +P W L G+ ++ + Sbjct: 131 VLRRVAERDAPSAAAARARVVADDCSLEDLALTAALPIWLVRALAASRGESFARQLALSL 190 Query: 173 ISPLYIDLTVKFDIETW--------AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 P + + E A L + P + Sbjct: 191 ADPAPVYVVGNAAREDATVTQALLSAAGLGPLPTGLPASFELAHPSGLARSDLVGGVRAV 250 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA------LDVSKRRLEK 278 D ++ + + S+L++ KT L + + A +++ +L Sbjct: 251 PADLASQLVALIAAPAPGGSLLEVGQGRATKTILLQGAALRGGASADIVSVELETGKLRL 310 Query: 279 LRCNLDRLHLYAEDII--------EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R L R L D ++ F V VDAPCS GT+RRHP++ W Sbjct: 311 ARERLARAGLSDHCRSLSLDARRLSDDDIPAELRRAFGCVFVDAPCSGAGTLRRHPEIAW 370 Query: 331 TRDTDDIVKS-ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPV 388 + D+ + + Q ++L S V GG +V+S CS + E VV+ L S + Sbjct: 371 SLDSTAALGTLPTLQLQILSAASSRVALGGSLVYSTCSPLVSEDESVVRAFLASPAGQGF 430 Query: 389 ELVPLNSAYWKSID-------MAMALSPEGWI--RITPDMLEKIDGVSSGMDGFFAVALR 439 +VP+ SA S +A ++S EG+ R P D F L Sbjct: 431 SVVPVASAPGLSNAGATAARLVAESMSAEGFFVARQLPGS----------HDAHFCARLV 480 Query: 440 RLIQ 443 R + Sbjct: 481 RKGE 484 >gi|34809569|pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 17/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 W + + E+ L + + + + V G L Sbjct: 24 YFQLWGERAIRIAEAXEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLT 83 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 P SI S P F G+ ++Q+AS+ P V D AAPGGKT+ L + Sbjct: 84 REPFSITSTPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRND 143 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTI 322 + A DV + RL + R NL RL + + + + FD +L+DAPC+ +GTI Sbjct: 144 GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTI 203 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 ++P+ W R DDI Q +LL +G+ +KPGGI+V+S CSL+ +++E V+Q L Sbjct: 204 HKNPERKWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263 Query: 383 SSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + VEL+PL + LS E R+ PD+ GFF +R Sbjct: 264 NF--DVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDV--------HETSGFFIAKIR 313 Query: 440 RL 441 +L Sbjct: 314 KL 315 >gi|322705288|gb|EFY96875.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Metarhizium anisopliae ARSEF 23] Length = 659 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 153/371 (41%), Gaps = 40/371 (10%) Query: 92 QILYLDVADYAVV-DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150 Q+L + + V D A+ R S +L++ + E Sbjct: 230 QLLRTRITENIRVLDDFANLAE--------------DGRSRSEYTAQLIKDVCAYYGYSE 275 Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKE 207 + E+L N + A +A + + + ++ A L + + Sbjct: 276 YLAEKLYNLFTPREAFAFFEANETARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWS 335 Query: 208 LPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 + + P + G + +Q AS+ +P N VLD+ AAPGGKT + Sbjct: 336 KVGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMAAAPGGKTTYM 395 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAP 315 + + + A D +K R + L N+ RL + DA ++ P FD VL+DAP Sbjct: 396 AAMMKNTGVIIANDPNKARAKGLIGNIHRLGARNVIVSNYDAREFPKPMGGFDRVLLDAP 455 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V + D ++ Q++LLL I V K GG +V+S CS+ + Sbjct: 456 CSGTGVIAKDPSVKTNKTELDFMQLPHTQKQLLLAAIDSVNHSSKSGGYIVYSTCSVTIE 515 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGM 430 ++E+VVQ LR P V+LV A+ K + + +R+T + + + Sbjct: 516 ENEQVVQYALRRRPN-VKLVDTGLAFGKEGFTSFMGKKFDPSLRLT----RRYYPHAYNV 570 Query: 431 DGFFAVALRRL 441 DGF+ +++ Sbjct: 571 DGFYVAKFKKI 581 >gi|195119298|ref|XP_002004168.1| GI19747 [Drosophila mojavensis] gi|193909236|gb|EDW08103.1| GI19747 [Drosophila mojavensis] Length = 839 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 17/246 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + P + G + +Q AS+ +PV N +LD+C+APGGK + + + Sbjct: 389 IFNSTVPLGATPEYLAGHYMIQGASSMLPVIALAPQENERILDMCSAPGGKGSHIAAVMK 448 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320 + + A D ++ R++ + N RL + + DA + FD VL+DAPC+ TG Sbjct: 449 NTGVLFANDANRDRIKAVVANFHRLGIVNAIVSCEDATKFRNIMTGFDRVLLDAPCTGTG 508 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEV 376 + + P V T+ D+ + QRKLLL I V GG VV+S CS+ +++E V Sbjct: 509 VVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDAKSSTGGYVVYSTCSVLPEENEWV 568 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFF 434 + L+ V+LVPL + + + R P ++ + ++ MDGFF Sbjct: 569 IDYALKKR--NVKLVPLGIDFGEP-----GFTKFRQHRYHPSLNLCRRFYPHTNNMDGFF 621 Query: 435 AVALRR 440 L++ Sbjct: 622 VAKLKK 627 >gi|156085270|ref|XP_001610117.1| nucleolar protein-like protein with NOL1/NOP2/sun family RNA methylase domain [Babesia bovis T2Bo] gi|154797369|gb|EDO06549.1| nucleolar protein-like protein with NOL1/NOP2/sun family putative RNA methylase domain [Babesia bovis] Length = 515 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 92/367 (25%), Positives = 142/367 (38%), Gaps = 29/367 (7%) Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156 D+ D + V +E N A ++ EL + + + + Sbjct: 58 DLTDLSAVKSRIESICGLLSNWSAASKAGIATKKRGSYLRELQEMVTAYYGYSDEMSDYF 117 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM--------LPTGGIRL 205 + + +A PL + L V + A L A G+ + Sbjct: 118 LKLFSPTEAIQFFEANERPLPMTLRVNTLKTRRKELAAALIARGANVDPVGDWSKEGLVV 177 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 I + P + G + +Q A++ IPV + VLD+ AAPGGKT ++ + Sbjct: 178 HSSQVPIGATPEYLAGHYMMQSAASLIPVLALSPKDGEKVLDIAAAPGGKTTHIAQMMNN 237 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-DAVLVDAPCSSTGT 321 G + A D +K R L N+ RL + + D D D VL DAPCS G Sbjct: 238 GGILYANDFNKERCTALVANIHRLGITNTIVTNYDGLDLKGILPPLDRVLCDAPCSGLGV 297 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVV 377 I + P V R D+ ++A Q++LLL I + K G VV+S CS+ +++E+V+ Sbjct: 298 ISKDPSVKVKRTLMDLKQNADLQKRLLLCCIDMLSVNVKKGNCVVYSTCSISVEENEQVI 357 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP---DMLEKIDGVSSGMDGFF 434 LR V+LVPL ALS P + +DGFF Sbjct: 358 DYALRMR--DVKLVPLGVEAGSP-----ALSSFRGRHFHPSIGQHARRFYPHLHNLDGFF 410 Query: 435 AVALRRL 441 L +L Sbjct: 411 VAKLVKL 417 >gi|320586046|gb|EFW98725.1| nucleolar RNA methyltransferase [Grosmannia clavigera kw1407] Length = 722 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 128/318 (40%), Gaps = 23/318 (7%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVML 198 + E+ ++L + A +A +P + L A L + Sbjct: 258 MCSYYGYSEYLADKLFRLFPPREAFAFFEANETPRPVVLRTNTLKTHRRELAQALINRGV 317 Query: 199 PTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + + P + G + +Q AS+ +PV + VLD+ A Sbjct: 318 TLEPVGRWSKVGLQVFESNVPLGATPEYLAGHYILQAASSFLPVMALAPQEHERVLDMAA 377 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306 APGGKT + + + V A D SK R + L N+ RL + DA D+ Sbjct: 378 APGGKTTHMAALMKNTGVVFANDPSKARSKGLIGNIHRLGARNVIVCNYDARDFPRVIGG 437 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPCS TG I + P V + D ++ Q++LLL I V K GG +V Sbjct: 438 FDRVLLDAPCSGTGVIAKDPSVKTNKTEKDFMQLPHVQKQLLLAAIDSVNHASKTGGYLV 497 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VV L+ P + + M + + ++ M + Sbjct: 498 YSTCSVTVEENEAVVAYALKRRPNVRLVETGLPFGKEGFTSIMGKTFDPTLK----MTRR 553 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGFF L++ Sbjct: 554 FYPHHQNVDGFFVAKLQK 571 >gi|18977629|ref|NP_578986.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM 3638] gi|18893351|gb|AAL81381.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 310 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 17/304 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 W + + E+ L + + + + V G Sbjct: 16 ERYYQLWGERAIRIAEAMEKPLPRCFRVNTLKGTISEITKRLMKKGFQFTRVPWAREGFC 75 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 L P SI S P + G+ ++Q+AS+ P V D+ AAPGGKT+ + + Sbjct: 76 LTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYMAQLME 135 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 + + A DV + RL++ R NL RL + I + + FD +L+DAPC+ +G Sbjct: 136 NKGLIFAFDVDEERLKETRLNLSRLGVLNTILIHKSSLYIDELNMSFDKILLDAPCTGSG 195 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI ++P+ R DDI Q K++ + + +KPGGI+V+S CSL+ +++E V+Q Sbjct: 196 TIHKNPERKHNRTLDDIKFCQGLQMKMIEKALEVLKPGGILVYSTCSLEPEENEFVIQWA 255 Query: 381 LRSSPIPVELVPLNSAYWKSI-DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + +EL+PL I + LSPE R PD + GFF Sbjct: 256 LDNF--DIELLPLRYGEPALINPFGIELSPEIKKARRFYPD--------THKTSGFFIAK 305 Query: 438 LRRL 441 +R+ Sbjct: 306 IRKK 309 >gi|167624219|ref|YP_001674513.1| Fmu (Sun) domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354241|gb|ABZ76854.1| Fmu (Sun) domain protein [Shewanella halifaxensis HAW-EB4] Length = 404 Score = 156 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 75/448 (16%), Positives = 141/448 (31%), Gaps = 68/448 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L V+ L + L +Q + +V LR L Sbjct: 12 ELVISILDLVLSDGKPLDRAYSQHFSGLK---LEPTEQGRITFVVGDILRRLNLYCF--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + +LL V + + + K + K++ + + Sbjct: 66 -LSDVKPEEMARLGTRLLNV------------WHLFNELP-LPKMQYSLQIDPKVLATRI 111 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDI 186 + + P+W E + G + +K Sbjct: 112 EEAKAQPVLWDGC-------PDWLNEMGQKQMGDAWAAERAALNKPAKRFLRTNILKCTR 164 Query: 187 ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 E A+ L + T ++ F +G + QDA + + Sbjct: 165 EELANALRKEGVQTVNVDGVDTALEVTSDSALFRTEAFKKGWFEQQDAGSQLVALALDAK 224 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + V+D CA GGK + + ++ A+DV + +L+ L+ R + II Sbjct: 225 PGMRVVDACAGAGGKTLSISAQMQGKGRLLAMDVEQWKLDNLKQRARRGGAHNVETRIIA 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 K D VL+D PCS G ++R+PD W + + Q+ +L V Sbjct: 285 SSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG++V++ CS+ +++ + V L + + Sbjct: 345 KVGGMLVYATCSIMPEENRDQVDAFLAENKHFKFIED----------------------- 381 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E I +G DGF+ L R+ + Sbjct: 382 -----ETISPAETGFDGFYLAKLERIAE 404 >gi|157962778|ref|YP_001502812.1| Fmu (Sun) domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847778|gb|ABV88277.1| Fmu (Sun) domain protein [Shewanella pealeana ATCC 700345] Length = 449 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 83/463 (17%), Positives = 158/463 (34%), Gaps = 51/463 (11%) Query: 2 KSGMNARLVSS-------HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54 ++G A+ + L VM +++ ++ + + +D+ ++R + Sbjct: 13 QAGTPAQKRALSYSNTIHQLFISVMNEKLPADRIVGEYFRINKKHG--SKDRRVIRESLF 70 Query: 55 VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKR 113 R+ + V + ++ + L + VA++ ++ Q+ Sbjct: 71 ALFRWWGWLKKV------HTSEQQDATWFACLSL-VAELEAHKWPQFSEAWREFANQSAE 123 Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 ++ L + R + ++PEWF + ++ I C Sbjct: 124 FSLSQASQILTSVSDRCEYLNQQFSHLSFNDAELLPEWFWT-VSQVNDADKQAVIEAMCS 182 Query: 174 SPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 P E L A + L ++ ++ + G +Q Sbjct: 183 RPPIWGRAQTLTQEQLIASLASKDIVAIASEFFDDAVSLGHKSINLNAIDAYQRGELEIQ 242 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEK 278 D + + Q+ + D C+ GGKT QL + + D+ ++ LE+ Sbjct: 243 DLGSQVIGQICAPKADEQWWDTCSGAGGKTLQLRSLMLRQDSSASGEIVSSDIRRKPLEE 302 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L R + D FD VLVDAPCS TGT RR+PD+ W + + Sbjct: 303 LLKRAKRAGFNGITTAPWKSDDLPVKASSFDGVLVDAPCSCTGTWRRNPDMRWLDEASVV 362 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +L + VK G +V++ CSL ++E+VV L + EL L + Sbjct: 363 TDKHALQLDILTRSAKAVKSQGQLVYATCSLSPIENEQVVNAFLAEN-SEFELQTLTHPF 421 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + I P + DG F +++ Sbjct: 422 TGEQTQL--------LTIWPHEAD--------TDGMFVAKMKK 448 >gi|329910997|ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae bacterium IMCC9480] gi|327546013|gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae bacterium IMCC9480] Length = 437 Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 113/451 (25%), Positives = 184/451 (40%), Gaps = 50/451 (11%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + + ++R +L L + S + + ++ I +R L R DA++ Sbjct: 16 RSAAHAV--ALVRGGTALPQALTRV---QGYADTSGQARGAIQDIAYRAMRGLGRADALV 70 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYL--DVAD----YAVVDLAVEQAKRDKENRHFA 121 + + +L LL ++ I D+ + VV+ AVE A D H Sbjct: 71 TLLTSRAPE--PAALHGLLCCALTLIDRDESDLPAPYEIFTVVNQAVEAASADPAMAHAK 128 Query: 122 KLVNSILRRVSREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 +VN++LRR RE+ E+L++ P W+ + + N Y ++ + +P Sbjct: 129 GMVNAVLRRFLRERATLLAEVLRQPVAEWNYPGWWIDTMRNAYPQQWQAILHAGNAAPPL 188 Query: 178 I------DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 I T + A + E P ++ +PGF EG+ VQDA+A Sbjct: 189 ILRVNQRRTTPDAYLALLADQQILARQVGPDAIRLERPVPVLQIPGFMEGLVSVQDAAAQ 248 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYA 290 + L + + VLD CAAPGGKT L+ ALD RRL+++ NL RL L A Sbjct: 249 LAAPLLDARDGMRVLDACAAPGGKTGHLLERAQLDLIALDSDPRRLKRIEENLQRLQLTA 308 Query: 291 EDII-EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + + A D+ K FD +L D PC+++G +RRHPD+ W R D + A ++L Sbjct: 309 RLVAGDAAATDWWDGKPFDRILADVPCTASGILRRHPDIRWLRRKADTAQLAALSSRILD 368 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + P G ++F CSL Q+SE + P Sbjct: 369 NLWRMLAPDGKLLFVTCSLWPQESEAQAAAFAMRNQAERLPAPG---------------- 412 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + + DG F R+ Sbjct: 413 ----QLLP-----MATSNEDHDGLFYALFRK 434 >gi|313225604|emb|CBY07078.1| unnamed protein product [Oikopleura dioica] Length = 700 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 28/318 (8%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPT 200 E+ ER ++++A +A + + A L + Sbjct: 187 YYYGYNEYLCERFTELIPLDQLVAFFEANEVHRPVTIRTNTLKCRRRELAQALINRGVNL 246 Query: 201 GGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + I + P + G + +Q AS+ +PV VLD+CAAP Sbjct: 247 DPVGKWSKVGLVIYDSAVPIGATPEYLAGHYMLQSASSFLPVMALAPQEGEKVLDMCAAP 306 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308 GGKT + + + V A D +K R++ L N RL D + + FD Sbjct: 307 GGKTTYISQLMKNTGMVLANDKNKLRMKALVANSHRLGCSNVATCNYDGRSFPTIQGGFD 366 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364 V+ DAPC+ TG I + P +++ D+ + Q++LLL I V K GG +++ Sbjct: 367 RVICDAPCAGTGVIAKDPSAKLSKEDKDVRRIVHIQKELLLAAIDSVDAKSKTGGYIIYC 426 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEK 422 CSL +++E VV L++ + + L + R P + ++ Sbjct: 427 TCSLLVEENEWVVDYGLKNRNVKLVETGLELGE-------EGFTKYRSWRFHPSMNKTKR 479 Query: 423 IDGVSSGMDGFFAVALRR 440 + MDGFF ++ Sbjct: 480 YYPHINNMDGFFIAKFKK 497 >gi|212634133|ref|YP_002310658.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Shewanella piezotolerans WP3] gi|212555617|gb|ACJ28071.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Shewanella piezotolerans WP3] Length = 450 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 76/447 (17%), Positives = 156/447 (34%), Gaps = 44/447 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L + V + + ++ + + +D+ ++R + R+ + V Sbjct: 30 HQLFNSVFEQEMPADRIVGEYFRANKKHG--SKDRRVIRESLFALFRWWGWLKKV----- 82 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENRHFAKLVNSILRR 130 +S + + L V+ ++ + ++ Q+ + + + + Sbjct: 83 HTSTEQDESWFAALAMVA--ELEQHNWDQFSEAWREFANQSNQYSIVSSTKTMPTVVDKC 140 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 ++ ++P WF + + + + + I P K + Sbjct: 141 QYVQQSFTDIEFNPRDLLPIWFWD-ITDINAIDELALIEAMSSRPPIWGRAQKCTAQQLC 199 Query: 191 HKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 +L + + + L ++ + + G +QD + + Q+ L++ Sbjct: 200 AQLQSESIDASTSEFFSDTVNLGHKSINLNGIKAYLNGQLEIQDLGSQVIGQICAPLSDD 259 Query: 244 SVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + D C+ GGK+ QL TA D+ ++ L +L R Sbjct: 260 NWWDTCSGAGGKSLQLRSLMLTQDDKGLGSITASDIRRKPLAELAKRAKRAGFKGISTSP 319 Query: 296 M-DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D + FD VLVDAPCS TGT RR+PD+ W D + Q +L + Sbjct: 320 WKDESLPVAAESFDGVLVDAPCSCTGTWRRNPDMRWLDDVSVVNDKQALQLDILSRSAKA 379 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK G +V++ CSL ++E+VV++ L P + + + Sbjct: 380 VKLDGQLVYATCSLSPVENEQVVKQFLCLHPHF---------TLQQLSHPFTGRAATMLT 430 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P + DG F +RR+ Sbjct: 431 VWPQDAD--------TDGMFVAKMRRV 449 >gi|213620689|ref|ZP_03373472.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 224 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 27/236 (11%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTA 268 + +LPGFAEG VQDASA N +LDLCAAPGGKT + A V A Sbjct: 11 PVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLA 70 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRH 325 +D+ ++RL ++ NL RL + A + + D +C ++ FD +L+DAPCS+TG IRRH Sbjct: 71 VDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRH 129 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+ W R DI + A Q ++L +KPGG +V++ CS+ +++ + ++ L+ +P Sbjct: 130 PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTP 189 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ EG DGFF L + Sbjct: 190 DAALSETGTPDQPGQQNLPGG--EEG-------------------DGFFYAKLIKK 224 >gi|160935586|ref|ZP_02082961.1| hypothetical protein CLOBOL_00476 [Clostridium bolteae ATCC BAA-613] gi|158441330|gb|EDP19040.1| hypothetical protein CLOBOL_00476 [Clostridium bolteae ATCC BAA-613] Length = 531 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 68/261 (26%), Positives = 106/261 (40%), Gaps = 19/261 (7%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 +P P G++++Q+ SA V+L VLDLCAAPGGK Sbjct: 115 ERIPWVKEGYYYSGSRPGKHPYHEAGLYYIQEPSAMAVVELLDPRPGERVLDLCAAPGGK 174 Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAV 310 ++ + + + ++ R L N++R+ + + DA F + Sbjct: 175 SSHIASRMKGSGFLLSNEIHPARARILSQNMERMGVRNAVVSNEDAQSLAGTFDHFFHKI 234 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 +VDAPCS G R+ D + + A Q ++L S + PGG +V+S C+ Sbjct: 235 VVDAPCSGEGMFRKDEDARSQWSEEHVKMCAARQGEILDHAASMLAPGGRMVYSTCTFAP 294 Query: 371 QDSEEVVQKVLRSSPIPV-ELVPLNSAYWKSIDMAMALSPEGW-----IRITPDMLEKID 424 +++E V LR P E VP S + K EGW RI P +LE Sbjct: 295 EENEGTVLAFLRRHPEFCTEQVPAYSGFTKGKPQWAGPEAEGWGLERTFRIMPHILEGE- 353 Query: 425 GVSSGMDGFFAVALRRLIQPK 445 G F LR+ +P+ Sbjct: 354 -------GHFMAVLRKEGEPE 367 >gi|187476742|ref|YP_784766.1| ribosomal RNA small subunit methyltransferase [Bordetella avium 197N] gi|115421328|emb|CAJ47833.1| ribosomal RNA small subunit methyltransferase [Bordetella avium 197N] Length = 442 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 115/449 (25%), Positives = 183/449 (40%), Gaps = 59/449 (13%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 + + SLT L + +A+ +R++ D + + ++ Sbjct: 26 QAVDEGRSLTEALAESEAGL---------RPATQAVSFHAMRYMGWADTIANRLVPREP- 75 Query: 77 RKKYSLQQLLRVSVAQILY---------LDV-ADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LLRV+++ + + V A + VVD AV A + F L+N Sbjct: 76 --APLAGALLRVALSLLKEAPGADPLPGMPVYAPHTVVDQAVTAAAEHRRLAGFKGLING 133 Query: 127 ILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 LRR RE+ + ++A P+W+ + L Y ++ ++ A P + L V Sbjct: 134 SLRRFLREREQFEAQLANDPVVRWNHPQWWIKTLRQAYPQQW-QSLLAAANVPAPLTLRV 192 Query: 183 KFDIETWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + L+A + P + LPGFAEG W VQDA A + Sbjct: 193 NRRRASREQVLDAFSHAGLPAREAGEWGVVVLEPRPVAQLPGFAEGWWSVQDAGAQLAAP 252 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 L + + VLD CAAPGGKTA + ++ + ALD RLE++ NL RL L ++ Sbjct: 253 LLPLADGMRVLDACAAPGGKTAHMLEIANLDLVALDSDASRLERVGQNLARLGLSGASLV 312 Query: 295 EMDA---FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 DA + K FDAVL D PC+++G +RRHPD+ W R D+ ++A Q ++ Sbjct: 313 AADAAKLDSWWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQARIADAL 372 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 V PGG +++ CS+ E A+ A+ L G Sbjct: 373 WRVVAPGGHLLYVTCSIFP-----------------AEGQAQAQAFAARHADAIVLPAPG 415 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P L+ DGFF + Sbjct: 416 --QLLPVALDATPERQH--DGFFYALFAK 440 >gi|159476732|ref|XP_001696465.1| hypothetical protein CHLREDRAFT_38989 [Chlamydomonas reinhardtii] gi|158282690|gb|EDP08442.1| predicted protein [Chlamydomonas reinhardtii] Length = 360 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 127/322 (39%), Gaps = 30/322 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A E+ + N + L + +A P + L A L + Sbjct: 42 ATYYGYNEFMIDMYLNMFSVAEALELMEANEVPRPVTLRTNTLKTRRRELAAALIQRGVS 101 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV +V+D+ AA Sbjct: 102 LDPIGPWSKVGLVVYETKVPIGATPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAA 161 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KK 305 PGGKT + + + V A +++K RL+ + NL RL + + D + ++ Sbjct: 162 PGGKTTYIAALMRNTGTVFANEINKDRLKSITGNLTRLGVTNTVVCNYDGKELPQVLGQR 221 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIV 361 D VL+DAPCS TG + + P V ++ DI + Q++LLL I V GG V Sbjct: 222 SVDRVLLDAPCSGTGVVSKDPSVKTSKSQQDIWRCGHLQKQLLLAAIDLVDANSTTGGYV 281 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--M 419 V+S CS+ ++ E VV LR + V L I R P Sbjct: 282 VYSTCSVCVEEDEAVVNYALRKRNVKVVPTGLEFGREGFIRYR-------DFRFHPSLKH 334 Query: 420 LEKIDGVSSGMDGFFAVALRRL 441 + + +DGFF L++L Sbjct: 335 ARRFYPHAHNLDGFFVCKLKKL 356 >gi|198460957|ref|XP_001361857.2| GA21153 [Drosophila pseudoobscura pseudoobscura] gi|198137190|gb|EAL26436.2| GA21153 [Drosophila pseudoobscura pseudoobscura] Length = 934 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 ++ E+L + + ++ ++ + + A L Sbjct: 333 CLYYSYNDFLMEKLMDMFPLSELMEYLESSEVARPLTIRTNTLKIRRRQLAGALINRGVN 392 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 393 LDPLGKWTKEGLVIFNSQVPLGATPEYLGGYYMIQGASSMLPVMALAPQENERILDMCSA 452 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 453 PGGKGSHIAAAMKNSGVLFANDSNRDRIKAVVANFHRLGVVNSVVSCEDGTKFRKIMTGF 512 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D +L+DAPC+ TG + + P V T+ D+ + QRKLLL I V GGI+V+ Sbjct: 513 DRILLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSTGGIIVY 572 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 573 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 625 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGF+ L++ Sbjct: 626 RYYPHTHNMDGFYVAKLKK 644 >gi|195170348|ref|XP_002025975.1| GL10113 [Drosophila persimilis] gi|194110839|gb|EDW32882.1| GL10113 [Drosophila persimilis] Length = 934 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 ++ E+L + + ++ ++ + + A L Sbjct: 333 CLYYSYNDFLMEKLMDMFPLSELMEYLESSEVARPLTIRTNTLKIRRRQLAGALINRGVN 392 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+ + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 393 LDPLGKWTKEGLVIFNSQVPLGATPEYLGGYYMIQGASSMLPVMALAPQENERILDMCSA 452 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 453 PGGKGSHIAAAMKNSGVLFANDSNRDRIKAVVANFHRLGVVNSVVSCEDGTKFRKIMTGF 512 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D +L+DAPC+ TG + + P V T+ D+ + QRKLLL I V GGI+V+ Sbjct: 513 DRILLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSTGGIIVY 572 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 573 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 625 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGF+ L++ Sbjct: 626 RYYPHTHNMDGFYVAKLKK 644 >gi|116250091|ref|YP_765929.1| methyltransferase [Rhizobium leguminosarum bv. viciae 3841] gi|115254739|emb|CAK05813.1| putative methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 429 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 152/448 (33%), Gaps = 46/448 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ + ++ + L F D+ + IV LR ++D Sbjct: 10 AISVLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD- 66 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ A +++ +++ Sbjct: 67 -----DSPAAIAHGVM-------------FRQWGFSPDSLATELADDKFAPAPLSADAVS 108 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE--- 187 + + IPEW + E +G + A + +DL Sbjct: 109 AFQSRSLDDAPPHIRGDIPEWVQPSFEQAFGAGWLAEA-QALAARPTLDLRANLLKASRD 167 Query: 188 ---TWAHKLNAVMLPTGGIRLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF 237 + NA ++ ++ + F +G + VQD + I L Sbjct: 168 KVVKALERANAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLV 227 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + VLD CA GGKT + + + +V A D ++RL + L R + Sbjct: 228 LAHDGEQVLDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVH 287 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + D VLVDAPC+ TGT RR PD W ++ + Q+ L Q SF Sbjct: 288 DDARALSALAGRCDKVLVDAPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASSF 347 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS-AYWKSIDMAMALSPEGWI 413 VK GG +++ CS+ Q++EE ++ +P + L + D S +G Sbjct: 348 VKSGGELIYVTCSVLPQENEEQARRFTADNPDFQIVSALPAWDQLFGKDAPRPHSSDG-- 405 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + S+ DGFF ++R Sbjct: 406 -----LSVTLTPASTDTDGFFFCRMQRK 428 >gi|291280368|ref|YP_003497203.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1] gi|290755070|dbj|BAI81447.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1] Length = 389 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 107/425 (25%), Positives = 177/425 (41%), Gaps = 51/425 (12%) Query: 20 RKRISLTCLLDLEYGDSAFRLL-SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 +R LL G+ + R I T + L I +L L P + Sbjct: 10 NRRRLFNLLLSFFKGELKEDFFHDSPYRKFYRKIYFETFKHLGFIQYILTSYLKKETPIE 69 Query: 79 KYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 L + AQIL+L D+ +YA V+ +V K ++ LVN++LRR++ K Sbjct: 70 S---IAALTLGTAQILFLSDIPEYAAVNESVNLVKGKQK-----SLVNAVLRRIASNKEA 121 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L++ + + PE+F +R +N + + D E + ++ Sbjct: 122 ILKQYSILYDFPEYFIDRWKNKFNNQE--------------------DFEKFLKSIHEKP 161 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F + ++ D ++ L+ N +LD CAAPGGKT Sbjct: 162 EYYLLEVDTLKPTP--YFEDFDKKRYYPMDINSQRIPLLYEVKNPQKILDCCAAPGGKTI 219 Query: 258 Q--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP 315 +K+TA+D S+ RL L+ N+ L I D DY + FD +L+DAP Sbjct: 220 ILSKKYPESKITAMDKSRERLILLKNNIKNFSLENVTPILADFLDYKFNEKFDFILLDAP 279 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 C+S GTIR+HP+V+W ++ DI K + Q++ L + +S + GI+++S CSL+K++ Sbjct: 280 CTSLGTIRKHPEVVWLKNDKDINKMSKIQKRFLDKALSLLNNNGILIYSVCSLEKEEGIN 339 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ L P + D S DGFFA Sbjct: 340 NINYIINKYKNVKLLKPTIPLNSEEKD-----------------FFYTPFHLSKGDGFFA 382 Query: 436 VALRR 440 L + Sbjct: 383 AVLTK 387 >gi|321478295|gb|EFX89252.1| hypothetical protein DAPPUDRAFT_205675 [Daphnia pulex] Length = 474 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 129/317 (40%), Gaps = 26/317 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 ++ E + ++ +A +P + + A L + Sbjct: 66 CTYYSYNDFLMEAFMETFPLGELIEFLEANETPRPMTIRTNTLKTRRRDLAQALINRGVN 125 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I + + + P + G + +Q AS+ +PV VLD+ AA Sbjct: 126 LDPIGKWSKVGLVIYNSQVPVGATPEYLAGHYILQGASSFLPVMALAPQEGDKVLDMSAA 185 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT+ + + + + A D + R + + NL RL + ++ D + Sbjct: 186 PGGKTSHIAALMKNTGMLFANDANPDRAKAVVGNLHRLGVTNAVVMTYDGKILPKMSRGY 245 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 + VL+DAPCS +G I + P ++D+ DI + + Q++L+L I GG +V+S CS Sbjct: 246 NRVLLDAPCSGSGVISKDPSAKTSKDSKDIARCSHLQKELILAAIDCADEGGYIVYSTCS 305 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMALSPEGWIRITPDMLEKID 424 + Q++E VV L+ + V L+ + + + S + R P Sbjct: 306 VLVQENEWVVDYALKKRHVKVVETGLDFGRDGFPRFQKLVFHPSVKLCKRFYPH------ 359 Query: 425 GVSSGMDGFFAVALRRL 441 + MDGFF L+++ Sbjct: 360 --THNMDGFFVAKLKKI 374 >gi|156545253|ref|XP_001604770.1| PREDICTED: similar to CG8545-PA [Nasonia vitripennis] Length = 796 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 92/428 (21%), Positives = 169/428 (39%), Gaps = 39/428 (9%) Query: 26 TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQ 83 LL +E + + ++++ L A +N ++ + + L + L + +Q Sbjct: 347 NNLLPIEKANKRLKKKQEKERKLAEAEMNESISHQQIFNFPTEEELSNPTNLKDVQQRIQ 406 Query: 84 QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143 ++ V ++ L D + +E K D + Sbjct: 407 DVIMV-LSDFKKLRQPDRSR-SEYLELLKTDL---------------CTYFSYNSFLMEK 449 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 + + P +R + I + DL + L+ + T Sbjct: 450 LMQMFPLSELLEFLESSEVQRPMTIRTNTLKTRRRDLA--HALINRGVNLDPIGKWTNVG 507 Query: 204 RLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--- 259 + + + + P + G + +Q AS+ +PV N +LD+CAAPGGK++ + Sbjct: 508 LVVYSSQVPMGATPEYLAGHYILQGASSFLPVMALEPKINERILDMCAAPGGKSSHIAAL 567 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSS 318 + + + + DV+K R++ + N RL + I D FD VL+DAPC+ Sbjct: 568 MKNTGVLFSNDVNKDRIKAVIGNFHRLGITNSVICSYDGRKLPSVIKGFDRVLLDAPCTG 627 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSE 374 TG + + P V +D DI + QR+LLL I V GGI+V+S CS+ +++E Sbjct: 628 TGVVAKDPSVKTNKDEVDIQRCCTLQRELLLAAIDSVNARSESGGIIVYSTCSILPEENE 687 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDG 432 +V LR V++VP + A + R P + ++ MDG Sbjct: 688 WIVDYALRKR--DVKVVPTGLEFG-----ADGFTNYRQHRFHPSLKLTKRFYPHMHNMDG 740 Query: 433 FFAVALRR 440 F+ L++ Sbjct: 741 FYVAKLKK 748 >gi|119182737|ref|XP_001242484.1| hypothetical protein CIMG_06380 [Coccidioides immitis RS] Length = 682 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 156/370 (42%), Gaps = 36/370 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + A + + + +LR + + Sbjct: 232 QLLRTRITDTIRI--LGDLATLGQPGKSRVDYTDLLLRDICTY-----------YGYTPY 278 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + A +A +P + + ++ + + A L + + Sbjct: 279 LAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 338 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + VLD+ AAPGGKT + Sbjct: 339 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMS 398 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + V A D +K R + L N+ RL + +DA PK + FD VL+DAP Sbjct: 399 ALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDARTAFPKAMGGFDRVLLDAP 458 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 459 CSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 518 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ VLR P V++V + S + R+ M + +D Sbjct: 519 ENEAVVQYVLRKRPN-VKIVDTGLGNFGSEGFKSYKGKQFDPRM--AMTRRYFPHRENVD 575 Query: 432 GFFAVALRRL 441 GF+ L+++ Sbjct: 576 GFYVCKLKKI 585 >gi|194752730|ref|XP_001958672.1| GF12515 [Drosophila ananassae] gi|190619970|gb|EDV35494.1| GF12515 [Drosophila ananassae] Length = 896 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 131/319 (41%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L + + ++ +A + + A L + Sbjct: 337 CLYYSYNEFLMEKLMDMFPLTELMEYLEASEVARPLTIRTNTLKTRRRDLAGALINRGVN 396 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 397 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 456 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 457 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 516 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TG + + P V T+ D+ + QRKLLL I V GG +V+ Sbjct: 517 DRVLLDAPCTGTGVVSKDPSVKTTKSDVDVQRCYNLQRKLLLTAIDCVDAKSSSGGYIVY 576 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 577 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 629 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGF+ L++ Sbjct: 630 RYYPHTHNMDGFYVAKLKK 648 >gi|259419057|ref|ZP_05742974.1| Fmu [Silicibacter sp. TrichCH4B] gi|259345279|gb|EEW57133.1| Fmu [Silicibacter sp. TrichCH4B] Length = 393 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 83/452 (18%), Positives = 138/452 (30%), Gaps = 77/452 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L ++ + + L S F +D+ VR V LR Sbjct: 5 MTPG--ARVQAAIEILDEILAGQAT-EKTLTNWGRRSRFAG--SKDRAAVRDHVYQALRC 59 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 A+ + + +D A + Sbjct: 60 RRSYAALGGTATGRGV-----------MIGAC--------RDQGIDTADLFTGQ------ 94 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + L + + A + IPEW + ++ A + + Sbjct: 95 --GHAPAPLSESEQAHAGTFESDAEKNDIPEWLWPVF-ARSLGAQTEDVAQALRARASVH 151 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDAS 229 L V D + +L + T + E + + + G +QDA+ Sbjct: 152 LRVNLLKGDRDAAISRLQQDGISTEPHEASPTALVVTEGARRVKNAESYLSGFVELQDAA 211 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V + VLD C+ GGK A + V A D RR+ + R Sbjct: 212 SQAVVDALPLQSAPRVLDYCSGGGGKALAIAALRDGTVYAHDADPRRMRDIPERAARAGA 271 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D FD VL DAPCS +G+ RR P+ W D + + Q K+L Sbjct: 272 DITCLDTAD---LSKSAPFDLVLCDAPCSGSGSWRRDPEGKWRLTPDALDEIVALQSKIL 328 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 V GG++ F+ CS+ ++ + Q L Sbjct: 329 DDAAQLVADGGVLAFATCSMLDVENHKQAQDFLTRHAG---------------------- 366 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E V +G DGF+ +R Sbjct: 367 -------WEHLSESAWHVHTGTDGFYVSVFQR 391 >gi|262037542|ref|ZP_06011001.1| putative ribosomal RNA small subunit methyltransferase B [Leptotrichia goodfellowii F0264] gi|261748472|gb|EEY35852.1| putative ribosomal RNA small subunit methyltransferase B [Leptotrichia goodfellowii F0264] Length = 442 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 88/445 (19%), Positives = 179/445 (40%), Gaps = 38/445 (8%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +LL +M L+ + + +++++ + I+N+T++ L ID +L+ + Sbjct: 19 VNLLDEIM-SGKYSNIQLNHYFKTKNYL---KKEKLFITNIINITIKNLIYIDYLLEKTV 74 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI---- 127 + RK ++QLLR+SVAQ+ + + + V+ AVE AK ++ + VN+ Sbjct: 75 KNIQKRK---IKQLLRISVAQLFFTEADNAGVLYEAVEVAKIINNHQ--SGFVNATLQSV 129 Query: 128 --LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 + E I ++ + P+WF +++ Y ++ + I + S Y+ + Sbjct: 130 LRNKDEIIENIPKDRKDGILYSYPQWFVNKMKVDYPEDY-IDIMKSYKSRSYLSVRYNSK 188 Query: 186 I------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E ++ + +L + +I + G +QDAS+ + V+ Sbjct: 189 KLTKDRFEKILSEVKSGILFSADEVYYLSNSNIFDTEEYKNGNIIIQDASSYLAVKNLNV 248 Query: 240 LNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLD CAAPGGK + A D+ + +++ L + + ++ D Sbjct: 249 EKGDVVLDACAAPGGKSLAILQNFEPELLVAEDIHEHKIKILENMKKKYNFSNLKVVLND 308 Query: 298 AFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 A FD +L+D PCS G +R+ P+ ++ + I Q+K+ + +K Sbjct: 309 ATQIESLNMKFDKILLDVPCSGLGVLRKKPEKIYDLTGEQIKSLKKLQKKIFDSAYNSLK 368 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GI+++S C+ ++ ++ L V + G Sbjct: 369 ENGIILYSTCTFSINENTNNLEYFLEKYRDLVIEEVVIPENVDIRKDQWG----GVYITH 424 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 ++ DGF+ LR+ Sbjct: 425 KNIYN---------DGFYIAKLRKK 440 >gi|196007796|ref|XP_002113764.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens] gi|190584168|gb|EDV24238.1| hypothetical protein TRIADDRAFT_26585 [Trichoplax adhaerens] Length = 389 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 138/368 (37%), Gaps = 31/368 (8%) Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 L+ D +V ++ N + R+ L +A ++ + Sbjct: 7 RLEPPDLQLVHQRIKDTIAVLGNFKR---LRDPERKRKDYLDLLRHDLANYYNYNDYLMQ 63 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPE- 210 + + + + ++ +A + + A L + I Sbjct: 64 KFTDLFDIKELIEFLEANEVERPVTIRTNTLKSRRRDLAQALINRGVNLDPIGEWSKVGL 123 Query: 211 -------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 I + P + G + +Q AS+ +PV N VLD+C+APGGKT + + Sbjct: 124 IVFDSPVPIGATPEYLAGHYMLQGASSMLPVMALAAQPNEKVLDMCSAPGGKTTYIAALM 183 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSST 319 + + A DV+K R + L N+ RL + + + + FD VL+DAPCS T Sbjct: 184 KNTGMIVANDVNKERCKALTANIHRLGVVNTIVCSENGRQFPKIVGGFDRVLLDAPCSGT 243 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEE 375 G I + V + DI++ + Q++LLL I V GG +V+ CS+ ++ E Sbjct: 244 GVISKDASVKSNKVEKDILRCSHIQKELLLSAIDSVDARSSTGGYIVYCTCSIMVEEDEW 303 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGF 433 VV L+ + + L + R P + + MDGF Sbjct: 304 VVDYALKRRSVKLVSTGLEFG-------REGFTKFKERRFHPTLKLTRRYYPHEHNMDGF 356 Query: 434 FAVALRRL 441 F ++L Sbjct: 357 FVAKFKKL 364 >gi|320040863|gb|EFW22796.1| nucleolar RNA methyltransferase [Coccidioides posadasii str. Silveira] Length = 682 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 36/370 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + A + + + +LR + + Sbjct: 232 QLLRTRITDTIRI--LGDLATLGQPGKSRVDYTDLLLRDICTY-----------YGYTPY 278 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + A +A +P + + ++ + + A L + + Sbjct: 279 LAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 338 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + VLD+ AAPGGKT + Sbjct: 339 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMS 398 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + V A D +K R + L N+ RL + +DA PK + FD VL+DAP Sbjct: 399 ALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDARTAFPKAMGGFDRVLLDAP 458 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D Q++LLL I K GG +V+S CS+ + Sbjct: 459 CSGTGVISKDPSVKTSKTERDFFALPHMQKQLLLAAIDSTTHASKTGGYIVYSTCSVTVE 518 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ VLR P V++V + S + R+ M + +D Sbjct: 519 ENEAVVQYVLRKRPN-VKIVDTGLGNFGSEGFKSYKGKQFDPRM--AMTRRYFPHRENVD 575 Query: 432 GFFAVALRRL 441 GF+ L+++ Sbjct: 576 GFYVCKLKKI 585 >gi|303319389|ref|XP_003069694.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta SOWgp] gi|240109380|gb|EER27549.1| Nucleolar protein NOP2, putative [Coccidioides posadasii C735 delta SOWgp] Length = 682 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 36/370 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + A + + + +LR + + Sbjct: 232 QLLRTRITDTIRI--LGDLATLGQPGKSRVDYTDLLLRDICTY-----------YGYTPY 278 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + A +A +P + + ++ + + A L + + Sbjct: 279 LAEKLFSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 338 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + VLD+ AAPGGKT + Sbjct: 339 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERVLDMAAAPGGKTTYMS 398 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + V A D +K R + L N+ RL + +DA PK + FD VL+DAP Sbjct: 399 ALMRNTGCVLANDANKERAKGLIGNIHRLGCKNTIVSNLDARTAFPKAMGGFDRVLLDAP 458 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D Q++LLL I K GG +V+S CS+ + Sbjct: 459 CSGTGVISKDPSVKTSKTERDFFALPHMQKQLLLAAIDSTTHASKTGGYIVYSTCSVTVE 518 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ VLR P V++V + S + R+ M + +D Sbjct: 519 ENEAVVQYVLRKRPN-VKIVDTGLGNFGSEGFKSYKGKQFDPRM--AMTRRYFPHRENVD 575 Query: 432 GFFAVALRRL 441 GF+ L+++ Sbjct: 576 GFYVCKLKKI 585 >gi|254173584|ref|ZP_04880256.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] gi|214032276|gb|EEB73106.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] Length = 309 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 17/304 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 W + L E+ L + + + + V G Sbjct: 16 ERYYELWGERALAIAEAMEKPLPRCFRVNTLRIEVPKLTKLLNKKGFQFRRVPWAREGFC 75 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 L P SI S P + G+ ++Q+AS+ P +V D+ +APGGKT+ L + Sbjct: 76 LTREPFSITSTPEYLSGLLYIQEASSMYPPVALEPKPGETVADMASAPGGKTSYLAQLME 135 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320 + + A DV + RL++ R NL RL + + + FD +L+DAPC+ +G Sbjct: 136 NEGIIYAFDVGEDRLKETRLNLSRLGVTNTVLFHRSSLYIDELGVEFDKILLDAPCTGSG 195 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI ++P+ R +D+ Q K+L + +S ++ GGI+V+S CSL+ +++E V+Q V Sbjct: 196 TIHKNPERKANRTMEDVKFCQNLQMKMLEKALSVLRKGGILVYSTCSLEPEENEFVIQWV 255 Query: 381 LRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + VEL+PL A K + ++ + R PD G GFF Sbjct: 256 LDNF--DVELLPLRYGEPALTKPFGIELSEEIKKARRFYPD--------KHGTSGFFVAK 305 Query: 438 LRRL 441 LR+L Sbjct: 306 LRKL 309 >gi|145251900|ref|XP_001397463.1| ribosomal RNA methyltransferase Nop2 [Aspergillus niger CBS 513.88] gi|134083004|emb|CAK42767.1| unnamed protein product [Aspergillus niger] Length = 762 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 146/337 (43%), Gaps = 23/337 (6%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---V 182 + + + L+ I + E+L N + A +A +P + + + Sbjct: 244 APGKSRTDYTELLIADICTYYGYTPYLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTL 303 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 + + + A L + + + + P + G + +Q AS+ +PV Sbjct: 304 RTNRRSLAQALINRGVVLEPVGKWSKVGLQVFESAVPLGATPEYLAGHYIIQAASSFLPV 363 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N VLD+ +APGGKT + + + V A D SK R + L N+ RL Sbjct: 364 MALAPQPNERVLDMASAPGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNT 423 Query: 292 DIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + MDA PK + FD VL+DAPC+ TG I + P V +++ D + QR+LLL Sbjct: 424 IVTNMDARTAFPKAMGGFDRVLLDAPCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLL 483 Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 I V K GG VV+S CS+ +++E VVQ VLR P V+LV + S M Sbjct: 484 AAIDSVDHASKTGGYVVYSTCSVTVEENEAVVQYVLRKRPN-VKLVDTGLGDFGSPGMTS 542 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++T + + +DGFF L++ Sbjct: 543 YMGKHFDPKMT--LTRRYFPHRENVDGFFVCKLKKTA 577 >gi|254477468|ref|ZP_05090854.1| NOL1/NOP2/sun family protein [Ruegeria sp. R11] gi|214031711|gb|EEB72546.1| NOL1/NOP2/sun family protein [Ruegeria sp. R11] Length = 403 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 149/449 (33%), Gaps = 70/449 (15%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L ++ L S F +D+ VR V LR L A+ Sbjct: 7 RQAAIEILDQILA-GEPAEKQLTAWARRSRFAG--SKDRAAVRDHVFDALRCLRSFAALG 63 Query: 68 D----FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 ++ + + + LR VE H Sbjct: 64 GGGRVDLIDHTTTTGRQLMLGALRA-----------------EGVEPDTLFTGEGHGPSA 106 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV- 182 +N R EL A IP+W L + + V A A S + L V Sbjct: 107 LNDDERAALARVPELSD--AERLDIPQWLWP-LFSESLGDGVEAAGRALQSRAPVHLRVN 163 Query: 183 --KFDIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDASASIP 233 D +L + + + E + + +A G+ +QDA++ Sbjct: 164 RRHPDQAEAVARLASEGILAEPHPAADTALNVTEGARKLRNSLAYAHGLVELQDAASQAV 223 Query: 234 VQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 ++ + + VLD CA GGK A + + A D++ +R++ L +R Sbjct: 224 IEALPLADGMRVLDYCAGGGGKSLALAARAKIDLYAHDIAAQRMKDLPVRAERAG---VK 280 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + ++ K +D VL DAPCS +G+ RR P+ W + Q +L + Sbjct: 281 VTLLEPRKTGAKAPYDLVLCDAPCSGSGSWRRAPEGKWRLSQSQLDTLCQTQSAILDEAA 340 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 V GG++ ++ CS+ ++ + V L L + Sbjct: 341 ELVADGGVLAYATCSMLSVENRKQVDDFLARRS------------------GWQLQSDHG 382 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ G DGF+ LRR+ Sbjct: 383 WQV-----------QGGTDGFYVAVLRRI 400 >gi|303388173|ref|XP_003072321.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon intestinalis ATCC 50506] gi|303301460|gb|ADM10961.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon intestinalis ATCC 50506] Length = 306 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 18/307 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM------- 197 E+ E++ + ++ + + + + + L Sbjct: 4 YNEYLLEKICELFPRKEAEVFIEESEKQRPTTIRINTLLKRRKDVSKLLRGRGVDIDDLS 63 Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 G + + I + P + G + +Q A++ +PV L+V+DLCAAPGGKT Sbjct: 64 WTDSGCVIFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKTT 123 Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDA 314 + + + + A D+++ R+ L+ N+ R+ + I+ MD D VLVDA Sbjct: 124 HIAALMENTGTIYANDMNEERIAGLKSNVQRMGVKNCIIMNMDGRKVNVG-KVDRVLVDA 182 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS TG I + P V R +I + Q++L+L G ++PGGI+++S CS+ +++E Sbjct: 183 PCSGTGVISKDPSVKTNRTRSEIDRMVTLQKELILHGFEMLRPGGILMYSTCSVLVKENE 242 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 EVV +L P + G ++ M +I MDGFF Sbjct: 243 EVVNYLLNKCPSARMAQCEIDIGKDGFMSFKGRNYNGSLK----MARRIYPHVHNMDGFF 298 Query: 435 AVALRRL 441 +++ Sbjct: 299 YAKIQKK 305 >gi|115443216|ref|XP_001218415.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624] gi|114188284|gb|EAU29984.1| nucleolar protein NOP2 [Aspergillus terreus NIH2624] Length = 734 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 137/319 (42%), Gaps = 23/319 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 263 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 322 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV +LD+ AA Sbjct: 323 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPEERILDMAAA 382 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK + Sbjct: 383 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKAMGG 442 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V ++ D + QR+LLL I V K GG +V Sbjct: 443 FDRVLLDAPCTGTGVISKDPGVKTNKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIV 502 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VL+ P V+LV + S + ++T + + Sbjct: 503 YSTCSVTVEENEAVVQYVLKKRPN-VKLVDTGLGDFGSPGFTNYMGKHFDPKMT--LTRR 559 Query: 423 IDGVSSGMDGFFAVALRRL 441 +DGFF +++ Sbjct: 560 YFPHRENVDGFFVSKFKKI 578 >gi|157128943|ref|XP_001661560.1| ribosomal RNA small subunit methyltransferase b (sun) [Aedes aegypti] gi|108872435|gb|EAT36660.1| ribosomal RNA small subunit methyltransferase b (sun) [Aedes aegypti] Length = 812 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 138/336 (41%), Gaps = 30/336 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK--- 183 R S L + + E+F + L + +L +A + + Sbjct: 289 PNRSRSEYMELLCKDLCIYYSYNEFFMQLLLKLFSPNELLEFLEASEVQRPLTIRTNSLK 348 Query: 184 FDIETWAHKLNAVM--------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L G+ + + + P + G + +Q AS+ +PV Sbjct: 349 TRRRDLAQALINRGVNLDPIGKWSKEGLVVYTSQVPLGATPEYLAGHYMIQGASSMLPVI 408 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 G N +LDLCAAPGGK++ + + + + A DV+K RL+ + N RL + Sbjct: 409 ALGPEENERILDLCAAPGGKSSHIAALMKNTGVLFANDVNKDRLQAVVGNFHRLGIQNAI 468 Query: 293 IIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + +D Y FD VL+DAPC+ +G I + P V T+ DI + QRKLLL Sbjct: 469 VTSIDGTKYRDVMTGFDRVLLDAPCTGSGVISKDPSVKTTKTDVDIQRCYNLQRKLLLTA 528 Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA- 406 I + + GG +V+S CS+ Q++E VV LR + + L+ ++ A Sbjct: 529 IDCLSANSETGGYLVYSTCSILPQENEWVVDYALRKRNVRLVSTGLDFGNEGFVNFAGQK 588 Query: 407 --LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S + R P MDGFF L++ Sbjct: 589 YHPSMKLTRRFYPHTF--------NMDGFFVAKLQK 616 >gi|254466156|ref|ZP_05079567.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium Y4I] gi|206687064|gb|EDZ47546.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium Y4I] Length = 390 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 147/452 (32%), Gaps = 78/452 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L V+ L S F +D+ VR V LR Sbjct: 1 MTP--AARLQAAIEILDQVLA-GEPAEKALTSWGRRSRFAG--SKDRAAVRDHVFTALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L A+ L + LR A + + Sbjct: 56 LRSHAALGGARSGRGL------ILGALR------------------EAGQDPDEVFTGQG 91 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A R+ E A IP+W + A + A S + Sbjct: 92 HAPAPLGESERLLPPPPEG----AEALDIPDWLWPAF-SASLGAGAEAAAQALRSRAPVH 146 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIR----------LKELPESIVSLPGFAEGVWWVQDAS 229 L V T A+ R + E + + +++G+ +QDA+ Sbjct: 147 LRVNTSRGTLQQAQEALAADGIATRPHPAAATALEVTEGARKLRNAKAYSDGLVELQDAA 206 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V+ + +SVLD CA GGK A + ++ A D +R++ L R Sbjct: 207 SQAVVERLPLTDGMSVLDYCAGGGGKSLAMAARARIRLHAHDADPKRMKDLPERAARAGA 266 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D P FD VL D PCS +G+ RR P+ W + + Q ++L Sbjct: 267 GVTLLTSADFARTGP---FDLVLCDVPCSGSGSWRRAPEGKWRLTPEGLRALQETQSEIL 323 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 PGG + ++ CS+ + ++ + VQ + ++P +L+ Sbjct: 324 RTAAGLTAPGGTLAYATCSMLQAENTQQVQTFIGNNPEW------------------SLA 365 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E ++ G DGF+ L R Sbjct: 366 AEQSWQV-----------QDGTDGFYVAVLTR 386 >gi|297517906|ref|ZP_06936292.1| 16S rRNA methyltransferase B [Escherichia coli OP50] Length = 259 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 19/265 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A K + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIE---LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N +LR+ R++ E + P W +RL+ Y E+ +I +A Sbjct: 115 KGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP 173 Query: 178 IDLTV---KFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + L + ++W L+ + P + +LPGF +G VQDA Sbjct: 174 MWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDA 233 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPG 253 SA + N +LDLCAAPG Sbjct: 234 SAQGCMTWLAPQNGEHILDLCAAPG 258 >gi|256043272|ref|ZP_05446209.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|256111724|ref|ZP_05452708.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis bv. 3 str. Ether] gi|326410534|gb|ADZ67598.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis M28] gi|326553825|gb|ADZ88464.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis M5-90] Length = 364 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 130/342 (38%), Gaps = 23/342 (6%) Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 +R + +++ R + + + +PEW LE +G ER ++ A + Sbjct: 28 HGDRFAPEGLDAARRAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALAT 86 Query: 175 PLYIDLTVKFDIETWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEG 221 +DL V T L A+ E++ P F +G Sbjct: 87 RPAVDLRVNSLKATPEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDG 146 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278 + VQD + + G VLD CA GGKT A + + ++ A D + RL Sbjct: 147 WFEVQDLGSQLAALFAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSP 206 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + L R + + D VL DAPC+ +GT RR PD W + + Sbjct: 207 MHERLQRAGVRNTQVYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLE 266 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q+ +L FVKPGG + + CSL +++ V + L +P E+ P Sbjct: 267 RRVQDQQDVLDSARRFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGT 326 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D + + P +S+G DGF+ L+R Sbjct: 327 VVQDDSAGKP------VFPSHGSVFSPLSTGTDGFYVSILQR 362 >gi|254461760|ref|ZP_05075176.1| Fmu [Rhodobacterales bacterium HTCC2083] gi|206678349|gb|EDZ42836.1| Fmu [Rhodobacteraceae bacterium HTCC2083] Length = 398 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 86/451 (19%), Positives = 157/451 (34%), Gaps = 68/451 (15%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + L + + L S F +D+ VR V LR Sbjct: 1 MTPG--ARISAAIECLDLIFD-GMPAEKALTGWARRSRFAG--SKDRNAVRDHVFDALRR 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + S+ + + + + D+ A+ + Sbjct: 56 RDTCATIGGELTGRSV-----------MIGLV-LFHDDLGFDALFN------GVGHAPDE 97 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + S L +V ++ + + +W ++L + + + I++A S +D Sbjct: 98 LNEEEKSRLSKVLSSEVNAAGGASTSWDLQDWCCDKLSSSHP-QNARHIAEALKSRAPVD 156 Query: 180 LTVKFDIE---TWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDAS 229 + V +L+A + RLK+ I + +G+ +QDA Sbjct: 157 VRVNLRRSMVSQAQEQLHAEAIEAETCSLAPAALRLKQNARKIARSQTYLDGIIELQDAG 216 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V + +VLD CA GGK+ + S A+V A D+S R+ + +R + Sbjct: 217 SQALVGALPLDDCKTVLDYCAGGGGKSLAICDLSDAQVFAHDISVARMADIPKRAERAGV 276 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D + P FD VL DAPCS +G+ RR PD W + + Q ++L Sbjct: 277 SITCLASEDLPKHAP---FDLVLCDAPCSGSGSWRRSPDAKWRITPEKFNELLGLQFEIL 333 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + V P G + ++ CSL +++ V++ L P Sbjct: 334 CKAQKLVVPMGYLAYATCSLFAEENGYQVRRFLEKHPNFER------------------- 374 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + DGFF ++ Sbjct: 375 ----------KSQHNWTPADECDGFFVCVMQ 395 >gi|167585080|ref|ZP_02377468.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia ubonensis Bu] Length = 465 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 171/444 (38%), Gaps = 45/444 (10%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R+ +L L + A + + + + T+R L D ++ ++ + P Sbjct: 43 RRGTALPAALATVFAGMASGAQALA-RGATQDVAYRTMRRLGSADWLIGRLVSKAPPAHV 101 Query: 80 YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + VVD AV +E +VN++LRR Sbjct: 102 QAVLACALALLLDEGDAAAY-------PAFTVVDQAVTAIGARREVAFAKGMVNAVLRRF 154 Query: 132 SREKIE----LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RE+ + W+++ ++ + ++ + L V Sbjct: 155 LRERDAQVAAMQDDPVARWNYRAWWRDAVQAAWPDGWQAMLAAGDRPGP-LTLRVNARRT 213 Query: 188 TWAHKLNAVMLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 T L+ + P + +PGFA+GV VQDA A + + G Sbjct: 214 TVDAYLDTLRSHGIDAAAIGKHAVRLASPLPVERIPGFADGVVSVQDAGAQLAAEWLGAA 273 Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 + + VLD CAAPGGKT ++ + A+V AL+ R ++ NL RL L A D+ D Sbjct: 274 DGMRVLDACAAPGGKTGHILELADAEVIALESDAARATRIGENLARLSLVA-DVRVGDAG 332 Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 ++ + FD +L D PCS++G +RRHPD+ W R DI QR++L VK Sbjct: 333 APGEWHDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIPALVAEQRRILSALWPLVK 392 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ ++ E + + V L ++ Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPRAASGGAQAG-------- 444 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF ++ Sbjct: 445 ----AAGPDQNTDHDGFFYARFQK 464 >gi|17989235|ref|NP_541868.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260564480|ref|ZP_05834965.1| hypothetical protein BAWG_1695 [Brucella melitensis bv. 1 str. 16M] gi|265989698|ref|ZP_06102255.1| fmu domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265993197|ref|ZP_06105754.1| fmu domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265999158|ref|ZP_06111585.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9] gi|17985095|gb|AAL54132.1| 16S ribosomal RNA m(5)c 967 methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260152123|gb|EEW87216.1| hypothetical protein BAWG_1695 [Brucella melitensis bv. 1 str. 16M] gi|262764067|gb|EEZ10099.1| fmu domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263000367|gb|EEZ13057.1| fmu domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|263092467|gb|EEZ16720.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9] Length = 380 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 130/342 (38%), Gaps = 23/342 (6%) Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 +R + +++ R + + + +PEW LE +G ER ++ A + Sbjct: 44 HGDRFAPEGLDAARRAAWQSRDLATAPAHIQADVPEWCIPSLEELFG-ERWVSEGKALAT 102 Query: 175 PLYIDLTVKFDIETWAHKLNAV-------MLPTGGIRLKELPESIVSLP------GFAEG 221 +DL V T L A+ E++ P F +G Sbjct: 103 RPAVDLRVNSLKATPEKTLAALEKAGAAPAPFLAQALRIPPIEALGRHPNVQGEQAFLDG 162 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278 + VQD + + G VLD CA GGKT A + + ++ A D + RL Sbjct: 163 WFEVQDLGSQLAALFAGVKPGEQVLDYCAGAGGKTLALAAAMGNSGQIHAYDAERARLSP 222 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + L R + + D VL DAPC+ +GT RR PD W + + Sbjct: 223 MHERLQRAGVRNTQVYGGLDELGPLAGKMDLVLTDAPCTGSGTWRRRPDAKWRLNEQQLE 282 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q+ +L FVKPGG + + CSL +++ V + L +P E+ P Sbjct: 283 RRVQDQQDVLDSARRFVKPGGRLAYVTCSLFAEENTRQVARFLGENPDFKEIAPQTLWGT 342 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D + + P +S+G DGF+ L+R Sbjct: 343 VVQDDSAGKP------VFPSHGSVFSPLSTGTDGFYVSILQR 378 >gi|115353229|ref|YP_775068.1| sun protein [Burkholderia ambifaria AMMD] gi|115283217|gb|ABI88734.1| sun protein [Burkholderia ambifaria AMMD] Length = 462 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 169/444 (38%), Gaps = 48/444 (10%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R+ +L L + + + + + T+R L D ++ ++ + P Sbjct: 43 RRGTALPAALAAVFAQMPADAQALA-RGATQDVAYRTMRRLGSADWLIGRLVSKAPPAHV 101 Query: 80 YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + +VD AV +E LVN++LRR Sbjct: 102 QAVLAAALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154 Query: 132 SREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RE+ L W+ + ++ + ++ + L V Sbjct: 155 QRERDALVAALRDDPVARWNYRPWWIDAVKRAWPDAWQAILAAGERQGP-LTLRVNARRA 213 Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + L+ + +PGFA+GV VQDA A + + G Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273 Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 + + VLD CAAPGGKT ++ +GA+V AL+ R ++ NL RL L A D+ D Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSLTA-DVRVGDAG 332 Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD +L D PCS++G +RRHPD+ W R DI QR++L VK Sbjct: 333 APDAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ ++ E + + V L + A + + Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAGAAGARD------ 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF ++ Sbjct: 447 ---------QTTDHDGFFYARFQK 461 >gi|157961827|ref|YP_001501861.1| Fmu (Sun) domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846827|gb|ABV87326.1| Fmu (Sun) domain protein [Shewanella pealeana ATCC 700345] Length = 405 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 74/448 (16%), Positives = 148/448 (33%), Gaps = 68/448 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L V+ + L + L +Q + +V LR L Sbjct: 12 ELVISILDLVLSEGKPLDRAYSQHFS---GLKLEPTEQGRITFVVGDILRRLNLYCY--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + +LL V + + + + ++ ++ + L Sbjct: 66 -LSDVTPEEMARLGSRLLNV------------WHLFNELP-----LPKMQYSLQVDTADL 107 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYID-LTVKFDI 186 G P+W + E G + + + ++ +K Sbjct: 108 ASRIESAKAQPVLWDG---CPDWLNQMGEAQMGDKWPAERAALNKPAKRFLRTNILKCTR 164 Query: 187 ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + A+ L + T + + ++ F +G + QDA + + Sbjct: 165 DELANALRKEGVQTASVEGVDTALEVVSDSALFRTEAFKKGWFEQQDAGSQLVALALDAK 224 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + V+D CA GGK + + ++ A+DV + +L+ L+ R + II Sbjct: 225 PGMRVVDACAGAGGKTLSISAQMQGKGRLLAMDVEQWKLDNLKQRARRAGAHNVETRIIA 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 K D VL+D PCS G ++R+PD W + + Q+ +L V Sbjct: 285 SSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GGI+V++ CS+ +++ + + L + + Sbjct: 345 KVGGILVYATCSIMPEENRDQIDAFLAENKHFRFIED----------------------- 381 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E I +G DGF+ L R+ + Sbjct: 382 -----ETISPAETGFDGFYLAKLERISE 404 >gi|321252144|ref|XP_003192304.1| nucleolar RNA m(5)C methyltransferase; Nop2p [Cryptococcus gattii WM276] gi|317458772|gb|ADV20517.1| Nucleolar RNA m(5)C methyltransferase, putative; Nop2p [Cryptococcus gattii WM276] Length = 696 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 132/338 (39%), Gaps = 25/338 (7%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 + S ++L IA + +L + + LA ++ SP + + Sbjct: 290 PGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLFAADEALAFFESNESPRPVTIRANTLR 349 Query: 185 -DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L + I ++ E P I + P + G + +Q AS+ +PV Sbjct: 350 TRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGATPEYLAGHYMLQAASSFLPVI 409 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 N VLD+ +APGGKT + + V A D +K R + L N+ R+ Sbjct: 410 ALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVV 469 Query: 293 IIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA ++ FD VL+DAPCS TG I + V + D A Q++L+L Sbjct: 470 VCNYDAREFPKVMGGFDRVLLDAPCSGTGVISKDASVKVNKTERDFQLLAHLQKQLILCA 529 Query: 352 ISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 I V P GG +V+S CS+ ++E VV LR P V L Sbjct: 530 IDSVNPNSSTGGYLVYSTCSVTVDENESVVDYALRKRPN----VKLVETGLDFGVHGFKS 585 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + MDGFF + ++P+ Sbjct: 586 FEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFK--VEPR 621 >gi|195026871|ref|XP_001986354.1| GH21314 [Drosophila grimshawi] gi|193902354|gb|EDW01221.1| GH21314 [Drosophila grimshawi] Length = 843 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 118/246 (47%), Gaps = 17/246 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + P + G + +Q AS+ +PV VLD+C+APGGK + + + Sbjct: 410 IFNSTVPLGATPEYLAGHYMIQGASSMLPVIALAPQEKERVLDMCSAPGGKGSHIAAVMK 469 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320 + + A D ++ R++ + N RL + + DA + FD VL+DAPC+ TG Sbjct: 470 NTGVLFANDANRDRIKAVVANFHRLGIVNAVVSCEDATKFRNIMTGFDRVLLDAPCTGTG 529 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEV 376 + + P V T+ D+ + QRKLLL I V GG +V+S CS+ +++E V Sbjct: 530 VVSKDPSVKTTKSEIDVQRCYNLQRKLLLTAIDCVDAKSSTGGYIVYSTCSVLPEENEWV 589 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGFF 434 + L+ V+LVPL + + + R P ++ ++ ++ MDGF+ Sbjct: 590 IDYALKKR--NVKLVPLGIDFGEP-----GFTKFRQHRYHPSLNLSKRFYPHTNNMDGFY 642 Query: 435 AVALRR 440 L++ Sbjct: 643 VAKLKK 648 >gi|291563058|emb|CBL41874.1| tRNA and rRNA cytosine-C5-methylases [butyrate-producing bacterium SS3/4] Length = 496 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 99/254 (38%), Gaps = 16/254 (6%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A + E P G +++Q+ SA + +LDLCAAPGG Sbjct: 67 AKVPWAEEGFYYEADMRPGRHPFHEAGAYYIQEPSAMSVAEAVSPKPGEQILDLCAAPGG 126 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 K+ + + ++ R + L N++RL + + MD F P FD Sbjct: 127 KSTHLAGKMGGQGLLVCNEIHPARAKILSQNIERLGVKNAVVTNMDPFQLAPAFPEFFDG 186 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 ++VDAPCS G R+ + D + + A Q +L + +K GG + +S C+ Sbjct: 187 IVVDAPCSGEGMFRKDENARNEWSPDHVKQCAGLQDGILDCAAAMLKDGGRIAYSTCTFS 246 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGV 426 +++E+ + + L P + P Y+ A E +RI P + + Sbjct: 247 PEENEQSIARFLERHPEFSVVQPELVKYFSGGHPEWADGDEELKKTVRIWPHLADGE--- 303 Query: 427 SSGMDGFFAVALRR 440 G F L + Sbjct: 304 -----GHFLALLVK 312 >gi|210633282|ref|ZP_03297747.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279] gi|210159200|gb|EEA90171.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279] Length = 495 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 94/479 (19%), Positives = 162/479 (33%), Gaps = 46/479 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + L + D+ LS RD + Sbjct: 23 MAGLTPARRATLDALMQAQESGRY---VRDIFAHGDQLGRLSSRDAAFALRLALGVTATE 79 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D L+ L + ++ LR+S + LYLD VV VE + + Sbjct: 80 GCLDDALNSHLAKP-GKVSARVRCCLRISAYEALYLDTPADVVVSQGVELVRSC--AKSA 136 Query: 121 AKLVNSILRRVSREKIEL------------LQRIAGISIIPEWFKERLENFYGKERVLAI 168 + L N++LRRV + + + A S +P W + + E + Sbjct: 137 SGLANAVLRRVCENRTQFLSAEDAVDEQRPIVSAARRSGLPVWLVRAITRAHPLESSRVL 196 Query: 169 SDACISPL---YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + +++ + +W + +L G ++ F Sbjct: 197 AAQTRPAPTAVHLNARLDGSKPSWLDQAQPALLGLAGAYRVAHVGAVAHAGAFDRADAVA 256 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK------VTALDVSKRRLEKL 279 D SA + + L++ A G KT + + ALD+ + + Sbjct: 257 SDFSAQLIATAAVAAGS--CLEIGAGRGTKTFVMQSQAIRAGLTRTHVALDLYEGKCAAN 314 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTGTIRRHPDV 328 ++ DA D + FD VLVDAPCS TGT+RRH ++ Sbjct: 315 ARRIELAEYPRVKTAFGDARDLDAVLGALDREAARRMEFDTVLVDAPCSGTGTMRRHGEI 374 Query: 329 LWTRDTDDIVK-SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-PI 386 W D+ + Q LL + V GG ++++ CS+ +++E V+++ RS Sbjct: 375 PWRLARTDVTRDLPELQLALLSAAAARVAVGGQLLYATCSIMPEENEGVLERFARSEMGS 434 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRRLIQ 443 + PL+ A ++ + IR D L DG F + R Q Sbjct: 435 AFRVEPLSQAPAFCLEPFRHAAD--VIRGHEDERGLFHTYPAPDEFDGHFCARMVRRSQ 491 >gi|163736396|ref|ZP_02143815.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107] gi|161390266|gb|EDQ14616.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107] Length = 403 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 83/443 (18%), Positives = 146/443 (32%), Gaps = 60/443 (13%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L ++ L S F +D+ VR V LR L A+ Sbjct: 7 RQAAIEILDHIL-TGEPAEKALTAWARRSRFAG--SKDRAAVRDHVFAALRCLRSYAALG 63 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + +Q L + L + D A + V A E A + + Sbjct: 64 GGGGAGEISDSNTTGRQ-LMLGA---LRAEGVDVAEIFSGVGHAPAPLEPAEEAAISTAP 119 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVK-FD 185 + + IP+W G A ++ + + D Sbjct: 120 -----------QMQPTEVLDIPDWLWPAFAASLGDAAEAAARALQQRAPVHLRVNQRKTD 168 Query: 186 IETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + L+ + + E + + + G+ +QDA++ ++ Sbjct: 169 RDAALIALSEEGILAEAHPAADTALSVTEGARKLRNSSAYLTGLVELQDAASQAVIEALP 228 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + VLD CA GGK+ + G A D++ +R++ L DR A ++ D Sbjct: 229 LADGQRVLDFCAGGGGKSLAIAARGNLAVFAHDIAPQRMKDLPARADRAGA-AITVLAPD 287 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 K FD VL DAPCS +G+ RR P+ W + Q ++L V Sbjct: 288 DV--AAKAPFDLVLCDAPCSGSGSWRRAPEGKWRLTQARLDDLCQTQAQILNDASQLVAT 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG + ++ CS+ ++ + V L +P L + ++ Sbjct: 346 GGTLAYATCSMLNAENCDQVAAFLARNPNW------------------QLQQDHGWQVH- 386 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 G DGF+ L R Sbjct: 387 ----------GGTDGFYVAVLSR 399 >gi|221484442|gb|EEE22738.1| conserved hypothetical protein [Toxoplasma gondii GT1] gi|221505587|gb|EEE31232.1| ribosomal RNA small subunit methyltransferase B, putative [Toxoplasma gondii VEG] Length = 804 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 120/322 (37%), Gaps = 25/322 (7%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG 201 E + + A +A + L A L A Sbjct: 280 YYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVD 339 Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + + + P + G + +Q A++ IPV V+D+ AAPG Sbjct: 340 PLGEWTKVGLKVYESTVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPG 399 Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDA 309 GKT + + + A D K R L NL RL + + +D D Sbjct: 400 GKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTMLPPMDR 459 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSN 365 L+DAPC+ +G I R P + R +D + + Q++LL + V GG +V+S Sbjct: 460 ALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPTGGYIVYST 519 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ +++E+VV +L + V+LVPL + + + P + Sbjct: 520 CSISVEENEQVVDYILTAR--NVKLVPLGVDI--GVPGLSGFRGQQFHNSVPLYTRRFYP 575 Query: 426 VSSGMDGFFAVALRRLI--QPK 445 + DGFF ++L +P+ Sbjct: 576 HVNNFDGFFVAKFKKLSNKKPE 597 >gi|167624961|ref|YP_001675255.1| Fmu (Sun) domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354983|gb|ABZ77596.1| Fmu (Sun) domain protein [Shewanella halifaxensis HAW-EB4] Length = 449 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 151/446 (33%), Gaps = 44/446 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L VM +++ ++ + +D+ ++R + R+ + + Sbjct: 30 YQLFVSVMNEKLPADRIVGEYFRTHKKHG--SKDRRVIRESLFALFRWWGWLKKI----- 82 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENRHFAKLVNSILRR 130 + ++ S L + VA++ ++ Q+ + LV+ R Sbjct: 83 -HTSEQQDTSWFACLSL-VAELEAHKWPQFSDAWREFANQSPEFNLSPATQALVSVSDRC 140 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + ++PEWF L ++ I C P + Sbjct: 141 AYLNQQFANISFCDTELLPEWFW-LLAEVDNSDKQAIIEAMCSRPPIWGRAQTITQQQLI 199 Query: 191 HKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L A + L + ++ + G +QD + + Q+ + Sbjct: 200 ASLANDEITAVANEYFDDAVSLGHKSVNFNAITAYQRGELEIQDLGSQVIGQICAPKADE 259 Query: 244 SVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 D C+ GGKT QL + + D+ ++ LE+L R Sbjct: 260 KWWDTCSGAGGKTLQLRSLMLRQGSSAQGSIVSSDIRRKPLEELTKRAKRAGFNGITTAP 319 Query: 296 MDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + FD VLVDAPCS TGT RR+PD+ W D + Q +L + + Sbjct: 320 WKSEALPVNANAFDGVLVDAPCSCTGTWRRNPDMRWLDDQSVVTDKHALQLDILTRSANA 379 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK G +V++ CSL ++E+VV L ++ EL L + + Sbjct: 380 VKSQGQLVYATCSLSPIENEQVVNAFLAAN-TEFELQTLTHPFTGEQTQ--------MLS 430 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 I P + DG F +++ Sbjct: 431 IWPHEAD--------TDGMFVAKMKK 448 >gi|145512139|ref|XP_001441986.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124409258|emb|CAK74589.1| unnamed protein product [Paramecium tetraurelia] Length = 554 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 130/319 (40%), Gaps = 26/319 (8%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM 197 + + + ++A DA +P I + V + A L Sbjct: 196 HLCTYYGYNSDLMSHFSSMFKPAELVAFLDANDAPRPITIRVNTLRTRRKELAQTLVQRG 255 Query: 198 LPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + I + P + G + +Q AS+ +PV N +LD+ Sbjct: 256 VNLDSVGDWTKVGLVIYESKVPIGATPEYLSGHYMLQSASSFLPVLALAPQMNERILDMA 315 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 AAPGGKT + + + + A D SK R + L NL R+ + + D + Sbjct: 316 AAPGGKTTYIAQLMKNSGVIFANDTSKDREKALFYNLQRMGVTNCIVTNYDGRKFPKVMK 375 Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD VL+DAPC+ G I + P + + DI+K + Q++L+L I K GGIVV+S Sbjct: 376 NFDRVLLDAPCTGLGIISKDPSIKAQKQMRDILKHSHLQKELILSAIDCCKKGGIVVYST 435 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEK 422 CS+ ++E V+Q L + + + L N K D S RI P + Sbjct: 436 CSVSVHENEVVLQYALNNRHVKLIETGLEVGNPGLLKFDDKKFHPSMNLARRIYPHV--- 492 Query: 423 IDGVSSGMDGFFAVALRRL 441 MDGFF L+++ Sbjct: 493 -----HNMDGFFYAKLKKI 506 >gi|307212380|gb|EFN88172.1| Putative RNA methyltransferase NOL1 [Harpegnathos saltator] Length = 778 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 67/246 (27%), Positives = 116/246 (47%), Gaps = 17/246 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + P + G + +Q AS+ +PV+ N +LD+CAAPGGK + + + Sbjct: 523 VYSSQVPMGATPEYLAGHYIIQGASSFLPVEALNPKENERILDMCAAPGGKASHIAALMK 582 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320 + + A DV++ RL+ + N RL + + D + FD VL+DAPC+ TG Sbjct: 583 NTGVLFANDVNQDRLKAVVGNFHRLGIVNSVVCSYDGRKFPTIMKGFDRVLLDAPCTGTG 642 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEV 376 + + P V +D DI + QR+LLL I V G I+V+S CS+ +++E + Sbjct: 643 VVAKDPSVKTNKDEVDIQRCCTLQRELLLAAIDCVNARSETGSIIVYSTCSILPEENEWI 702 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFF 434 + L+ V+L+P + + + R P + ++ MDGFF Sbjct: 703 IDYALKKR--DVKLLPTDLEFG-----TDGFTSYRQHRFHPSLKLTKRFYPHVHNMDGFF 755 Query: 435 AVALRR 440 L++ Sbjct: 756 VAKLKK 761 >gi|325190500|emb|CCA24999.1| ribosomal RNA methyltransferase nop2like protein put [Albugo laibachii Nc14] Length = 597 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 122/314 (38%), Gaps = 28/314 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM------- 197 E + L +A + + A L Sbjct: 189 YNRELVEMFLKIFSPAECLEFIEANEQTRPLVIRTNTLKARRRDLAQHLIQRGVNLDPLA 248 Query: 198 -LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 G+++ + P I + P + G + +Q AS+ V N VLD+ APGGKT Sbjct: 249 KWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSMCAVVALAPQLNERVLDMACAPGGKT 308 Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLV 312 + + + V A D+ K+RL+ NL RL + + D FD VL+ Sbjct: 309 TYIAQLMKNTGTVIANDLKKQRLKATVANLHRLGVRNCSVCCYDGRQLPALFKGFDRVLL 368 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSL 368 DAPC+ G I R P + + D+ + A Q++LLL I V K G +V+S CS+ Sbjct: 369 DAPCTGLGVISRDPSIKTQKTEKDVERLAHLQKELLLAAIDAVDARSKTAGYIVYSTCSV 428 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGV 426 +++E V+ L V+LV + KS + R P M ++ Sbjct: 429 MVEENEAVIDYALGKR--CVKLVDPGLDHGKS-----GFTRYQHQRFHPSLSMSKRFYPH 481 Query: 427 SSGMDGFFAVALRR 440 MDGFF L++ Sbjct: 482 VHNMDGFFVAKLKK 495 >gi|171319444|ref|ZP_02908549.1| sun protein [Burkholderia ambifaria MEX-5] gi|171095336|gb|EDT40317.1| sun protein [Burkholderia ambifaria MEX-5] Length = 462 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 48/444 (10%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R+ +L L + + + + T+R L +D ++ ++ + P Sbjct: 43 RRGTALPTALATVFAQMP-AGAQALARGATQDVAYRTMRRLGSVDWLIGRLVSKAPPAHV 101 Query: 80 YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + +VD AV +E LVN++LRR Sbjct: 102 QAVLAGALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154 Query: 132 SREKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RE+ L W+ + ++ + ++ + L V Sbjct: 155 QRERDVLVAALQDDPVARWNYRPWWIDAVKRAWPDAWQAILAAGERQGP-LTLRVNARRA 213 Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + L+ + +PGFA+GV VQDA A + + G Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273 Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 + + VLD CAAPGGKT ++ +GA V AL+ R ++ NL RL L A D+ D Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGADVVALESDATRAARIGENLARLSL-AADVRVGDAG 332 Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD +L D PCS++G +RRHPD+ W R DI QR++L VK Sbjct: 333 APGAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ ++ E + + V L + A + + Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVHAGAAGALD------ 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF ++ Sbjct: 447 ---------QNTDHDGFFYARFQK 461 >gi|147778971|emb|CAN71575.1| hypothetical protein VITISV_037193 [Vitis vinifera] Length = 741 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 34/326 (10%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 E+ L + ++ + +A P I L A L + Sbjct: 207 YYGYNEFLIGVLVEMFPVIELMELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLD 266 Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + I + P + G + +Q AS+ +PV ++D+ AAPG Sbjct: 267 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPG 326 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A ++ + RL+ L NL R+ + + D + Sbjct: 327 GKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGHNTV 386 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V ++ +DI K A Q++L+L I V K GG +V+ Sbjct: 387 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDANSKSGGYIVY 446 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 S CS+ ++E V+ L+ + + L + + + S E R P + Sbjct: 447 STCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLEKTRRFYPHV- 505 Query: 421 EKIDGVSSGMDGFFAVALRRL--IQP 444 MDGFF L+++ +P Sbjct: 506 -------HNMDGFFVAKLKKMSNSKP 524 >gi|238485520|ref|XP_002373998.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus flavus NRRL3357] gi|220698877|gb|EED55216.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus flavus NRRL3357] Length = 751 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 264 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 323 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ +A Sbjct: 324 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASA 383 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK + Sbjct: 384 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTLVTHLDARTAFPKAMGG 443 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V ++ D + QR+LLL I V K GG +V Sbjct: 444 FDRVLLDAPCTGTGVISKDPAVKTSKTERDFLAIPHMQRQLLLAAIDSVDHSSKTGGYIV 503 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VLR P V++V + S + ++T M + Sbjct: 504 YSTCSVTVEENEAVVQYVLRKRPN-VKIVDTGLGDFGSPGFKEYMGKHFDAKMT--MTRR 560 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGF+ L++ Sbjct: 561 YFPHRENVDGFYVCKLKK 578 >gi|169771881|ref|XP_001820410.1| ribosomal RNA methyltransferase Nop2 [Aspergillus oryzae RIB40] gi|83768269|dbj|BAE58408.1| unnamed protein product [Aspergillus oryzae] Length = 751 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 84/318 (26%), Positives = 138/318 (43%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 264 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 323 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ +A Sbjct: 324 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASA 383 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK + Sbjct: 384 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTLVTHLDARTAFPKAMGG 443 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V ++ D + QR+LLL I V K GG +V Sbjct: 444 FDRVLLDAPCTGTGVISKDPAVKTSKTERDFLAIPHMQRQLLLAAIDSVDHSSKTGGYIV 503 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VLR P V++V + S + ++T M + Sbjct: 504 YSTCSVTVEENEAVVQYVLRKRPN-VKIVDTGLGDFGSPGFKEYMGKHFDAKMT--MTRR 560 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGF+ L++ Sbjct: 561 YFPHRENVDGFYVCKLKK 578 >gi|328767857|gb|EGF77905.1| hypothetical protein BATDEDRAFT_1711 [Batrachochytrium dendrobatidis JAM81] Length = 445 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 143/345 (41%), Gaps = 37/345 (10%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 K + R S +L++ IA + E+L + + V+ +A + + Sbjct: 112 KTMREADRSRSEYVDQLIKDIAYYYGYNHFLAEKLFHLFDLGEVIEFFEANEVARPVVIR 171 Query: 182 VKF---DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASA 230 A L + I ++ + P I + P + G + +Q A++ Sbjct: 172 ANTLKTRRRDLAQCLINRGVNLEPIGKWSKVGIQVFDSPVPIGATPEYLAGHYMLQAAAS 231 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +PV +N +LD+CAAPGGKT + + + + A D+SK RL+ L N R+ Sbjct: 232 FLPVMSLAPQSNERILDMCAAPGGKTTYIAALMKNTGCLFANDISKDRLKSLNANCHRMG 291 Query: 288 LYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + D + FD VL+DAPCS TG I + V + +D Q++ Sbjct: 292 VRNTVVCCYDGKQFPNVIGGFDRVLLDAPCSGTGVISKDQSVKINKGDEDFQILTQIQKE 351 Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 L+L I + GG +V+S C++ +++EEV+ L P K +D Sbjct: 352 LILSAIDSIDAHSSTGGYLVYSTCAITVEENEEVINYALNRRPN-----------VKLVD 400 Query: 403 MAMALSPEGWI-----RITPDM--LEKIDGVSSGMDGFFAVALRR 440 + EG+I + P M + + MDGFF L++ Sbjct: 401 SGLDFGREGFISFRGKQFHPSMALTRRYYPHTQNMDGFFVAKLKK 445 >gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1] gi|19068511|emb|CAD24979.1| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi GB-M1] Length = 370 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 79/297 (26%), Positives = 134/297 (45%), Gaps = 11/297 (3%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 P E K+R + I + D+ L+A+ G + + Sbjct: 80 FPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGV--DLDALSWTDSGCVVFK 137 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264 I + P + G + +Q A++ +PV L+V+DLCAAPGGKT + + + Sbjct: 138 SSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAALMENTG 197 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 + A DV++ R+ L+ N+ R+ + ++ MD ++ D VL+DAPCS TG I + Sbjct: 198 VIYANDVNEERIAGLKSNIQRMGVRNCIVMNMDGRKVNVGRV-DRVLLDAPCSGTGVISK 256 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P V +R +I + Q++L+L G +KPGGI+++S CS+ +++EEVV +L Sbjct: 257 DPSVKTSRTRSEIDRMVTLQKELILHGFGMLKPGGILMYSTCSVLVKENEEVVNYLLSKC 316 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA-LRR 440 P + G ++ M +I MDGFF L++ Sbjct: 317 PSAKMAECEIDIGKDGFMSFKGKNYNGSLK----MARRIYPHVHNMDGFFYAKILKK 369 >gi|260752276|ref|YP_003225169.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551639|gb|ACV74585.1| Fmu (Sun) domain protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 408 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 81/462 (17%), Positives = 144/462 (31%), Gaps = 81/462 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ + + L+ + + +D+ +R +V Sbjct: 1 MIP--QARVEAAIELLDQIIQAVRDEGSAADRLISQYFKTRRYAG--SKDRAAIRNLVYR 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R + D ++ + + LL + E AK + Sbjct: 57 AIREIG--DCPINGRAAMIQLAQNDAELALLFDG-----SMRAPAPISDKEFAEAAKISQ 109 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 +N +P W E++ +A + Sbjct: 110 KNTSL---------------------------LPAWLAEKMAASDIDTA---EQNALLGR 139 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASA 230 +D+ + L A L + P + G +QDA + Sbjct: 140 APLDIRFNPHLTDIDTVLAAFPEGQVISGLPYAVRLREGTKVDQSPLWKSGAIEIQDAGS 199 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK--------TAQLIVSGAKVTALDVSKRRLEKLRCN 282 + + + V+DLCA GGK A + + A D + RL +L+ Sbjct: 200 QWASSICQAQSGMKVIDLCAGAGGKSLALASDMLANNNAAKLNLIACDTDRNRLSRLQPR 259 Query: 283 LDRLHLYAEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 +R L + ++ D VL+DAPCS +GT RR+P+ W ++ + Sbjct: 260 AERAKLPPIEQRLLNPKQENKALGDLAHQADLVLIDAPCSGSGTWRRNPEARWRLNSTRL 319 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q LL V+P G +V+ CS+ + + L P P A Sbjct: 320 QRVIDTQSHLLDVASQLVRPNGYLVYVVCSVLDDEGANQITAFLNRHPDWTVENPDIQA- 378 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 G +R + + DGFF LR Sbjct: 379 -------------GHLR---GDGRRFTVLQDKSDGFFVSRLR 404 >gi|330861820|emb|CBX71992.1| ribosomal RNA small subunit methyltransferase B [Yersinia enterocolitica W22703] Length = 292 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 134/297 (45%), Gaps = 19/297 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ +S V+ + SL+ +L + +S +D+ L++ + TLR L Sbjct: 1 MKNTYNLRSIAAKAISQVLDQGQSLSTVLPGL-----QKSISDKDRALLQELCFGTLRVL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ + ++ + K+ L+ V + Q++Y + +A + VE A K + Sbjct: 56 PQLEWCIQQLMARPMTGKQRVFHYLIMVGLYQLIYTRIPPHAALAETVEGATALKRPQ-L 114 Query: 121 AKLVNSILRRVSREKI---ELLQRIAGISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R+++ E + P W R++ Y + + + P+ Sbjct: 115 KGLINGVLRQFQRQQVELLERAANNDSHYLHPSWLLARIKLAYPDQWQQILDANNQKPPM 174 Query: 177 YIDL-TVKFDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDAS 229 ++ + + + L + P ++ LPGF G VQDAS Sbjct: 175 WLRVSRLHHSRIEYLGLLKQANIEALPHDFYPDAVRLITPCAVSDLPGFELGWVTVQDAS 234 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLD 284 A V L +LDLCAAPGGKT ++ A V A+D+ ++RL +++ + Sbjct: 235 AQGCVDLLDPQEGEQILDLCAAPGGKTTHILEAAPKAHVLAVDIDEQRLSRVKETYN 291 >gi|328850880|gb|EGG00040.1| hypothetical protein MELLADRAFT_45567 [Melampsora larici-populina 98AG31] Length = 468 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 84/342 (24%), Positives = 132/342 (38%), Gaps = 27/342 (7%) Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 A + + + I E+ L +G E LA +A + + Sbjct: 27 WRALGSKAGGKSRIDLVTQTCSDICEYFGYNEFLASTLWELFGPEEALAFFEANETARPV 86 Query: 179 DLT---VKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQD 227 + ++ + A L + I I + P + G + +Q Sbjct: 87 TIRTNTLRTNRRDLAQCLINRGVNLEPIGKWSKVGLQVFESSVPIGATPEYLAGQYMLQA 146 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLD 284 AS+ +PV N LD+ AAPGGKT + A D SK R + L N+ Sbjct: 147 ASSFLPVIALAPQPNERCLDMSAAPGGKTTFMSAMMQNTGVLFANDASKNRCKSLMANVT 206 Query: 285 RLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 RL + I DA ++ FD VL+DAPCS TG I + V + D++ + Sbjct: 207 RLGCHNVVICNHDAREFPKVMGGFDRVLLDAPCSGTGVISKDASVKVNKSEKDLLLLSHL 266 Query: 344 QRKLLLQGISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q++L+L I V P GG +V+S CS+ +++E VV LR P V+LV + + Sbjct: 267 QKQLILCAIDSVSPHSVKGGFLVYSTCSVTTEENESVVDYALRKRPN-VKLVESGLTFGR 325 Query: 400 SIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALR 439 + P + + +DGFF LR Sbjct: 326 -----EGFTNFRGKTFHPSLKLTRRFYPHVHNVDGFFVAKLR 362 >gi|195485322|ref|XP_002091044.1| GE12467 [Drosophila yakuba] gi|194177145|gb|EDW90756.1| GE12467 [Drosophila yakuba] Length = 902 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L + ++ +A + + A L + Sbjct: 336 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 395 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 396 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 455 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 456 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 515 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TG + + P V T+ D+ + QRKLLL I GG +V+ Sbjct: 516 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 575 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 576 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 628 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGF+ L++ Sbjct: 629 RYYPHTHNMDGFYVAKLKK 647 >gi|194883628|ref|XP_001975903.1| GG20307 [Drosophila erecta] gi|190659090|gb|EDV56303.1| GG20307 [Drosophila erecta] Length = 897 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L + ++ +A + + A L + Sbjct: 333 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 392 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 393 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 452 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 453 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 512 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TG + + P V T+ D+ + QRKLLL I GG +V+ Sbjct: 513 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 572 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 573 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 625 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGF+ L++ Sbjct: 626 RYYPHTHNMDGFYVAKLKK 644 >gi|22024126|ref|NP_610786.2| CG8545 [Drosophila melanogaster] gi|21627400|gb|AAF58504.2| CG8545 [Drosophila melanogaster] gi|254039763|gb|ACT56594.1| LD11307p [Drosophila melanogaster] Length = 891 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L + ++ +A + + A L + Sbjct: 326 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 385 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 386 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 445 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 446 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 505 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TG + + P V T+ D+ + QRKLLL I GG +V+ Sbjct: 506 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 565 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 566 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 618 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGF+ L++ Sbjct: 619 RYYPHTHNMDGFYVAKLKK 637 >gi|57640807|ref|YP_183285.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1] gi|57159131|dbj|BAD85061.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus kodakarensis KOD1] Length = 309 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 137/304 (45%), Gaps = 17/304 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 W + L ER L + + + + V G Sbjct: 16 ERYYQLWGERALAIAEAMERPLPRCFRVNTLRIEVHKLTKLLNKKGFQFKRVPWAREGFC 75 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 L P SI S P + G+ ++Q+AS+ P G V D+ AAPGGKT+ + + Sbjct: 76 LTREPFSITSTPEYLSGLLYIQEASSMYPPVALGPKPGEVVADMAAAPGGKTSYMAQLME 135 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320 +G + A DV + RL + R NL RL + + + FD +L+DAPC+ +G Sbjct: 136 NGGIIYAFDVGEDRLRETRLNLSRLGVTNTILFHSSSLHIDELGVEFDKILLDAPCTGSG 195 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI ++P+ R +D+ Q KLL +G+S +K GG++V+S CSL+ +++E V+Q V Sbjct: 196 TIHKNPERKANRTMEDVKFCQGLQMKLLEKGLSVLKKGGVLVYSTCSLEPEENEFVIQWV 255 Query: 381 LRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + VEL+PL A K + ++ + R PD G GFF Sbjct: 256 LDNF--EVELLPLRYGEPALTKPFGIELSEEIKKARRFYPD--------RHGTSGFFVAK 305 Query: 438 LRRL 441 +++L Sbjct: 306 IKKL 309 >gi|46123731|ref|XP_386419.1| hypothetical protein FG06243.1 [Gibberella zeae PH-1] Length = 678 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 40/371 (10%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + + V + AK +E R + V+ +L+ + + Sbjct: 240 QLLRTRITENIRV--LDDFAKLSEEGRSRTEYVSQLLKDICSY-----------YGYSAY 286 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L N + A +A S + + ++ A L + + Sbjct: 287 LAEKLFNLFTPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSK 346 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +P N VLD+ +APGGKT + Sbjct: 347 VGLQVFESSVPLGATPEYLAGHYILQAASSFLPCMALDPQENERVLDMASAPGGKTTYMS 406 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPC 316 + + V A D +K R + L N+ RL + DA ++ P FD VL+DAPC Sbjct: 407 AMMKNTGIVVANDPNKARAKGLIGNIHRLGCRNVIVSNYDAREFPKPMGGFDRVLLDAPC 466 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQD 372 S TG I + P V + D ++ Q++LLL I V K GG +V+S CS+ ++ Sbjct: 467 SGTGVIAKDPSVKTNKTELDFMQLPHLQKQLLLAAIDSVNHASKTGGYIVYSTCSVTVEE 526 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGM 430 +E+VV L P V LV + K + + P + + S + Sbjct: 527 NEQVVNYALSRRPN-VRLVDAGLTFGK-----EGFTSYMGKKFDPSVSLTRRFYPHSLNV 580 Query: 431 DGFFAVALRRL 441 DGF+ +++ Sbjct: 581 DGFYVAKFQKI 591 >gi|311029974|ref|ZP_07708064.1| sun protein [Bacillus sp. m3-13] Length = 275 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 17/244 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + L ++ F G +QD S+ + + G + V D CAAPGGKT + Sbjct: 43 IVSLKGNMAYSNAFKNGYMTIQDESSMLVARALGVEKDDFVYDCCAAPGGKTTHIAELLK 102 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA---FDYCPKKLFDAVLVDAPCSS 318 +V + D+ + +++ ++ +RL L + +D+ + ++ FD +LVDAPCS Sbjct: 103 DSGRVISTDLHEHKVKLIKDQAERLQLSNIEAQALDSRKAQEIFKEEQFDKILVDAPCSG 162 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G IRR PD+ +T+ DI + A Q +L + VK GG +V+S C++DK+++ +VVQ Sbjct: 163 FGVIRRKPDLKYTKSMQDIKQLASIQLAILKEVAPLVKKGGTLVYSTCTIDKEENADVVQ 222 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L ++ + + ++ + EG +++ P G DGFF V L Sbjct: 223 AFLEANKEFEIDFNIKELLPEKVN---SYVKEGMLQLLPHYF--------GTDGFFIVRL 271 Query: 439 RRLI 442 +R + Sbjct: 272 KRQV 275 >gi|328874823|gb|EGG23188.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum] Length = 713 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 128/319 (40%), Gaps = 27/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 A + E + L +A + + + + A L + Sbjct: 285 ATYFGYNTFLIEVFLKLFRVSECLEFLEANETQRPLTIRTNTLKARRKDLADALGGRGVH 344 Query: 200 TGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 I+ + + +I + P + G + Q AS+ +PV +LDLCA+P Sbjct: 345 LEPIKWSPVGLTIYDTQVAIGATPEYLAGHYIQQSASSFLPVVALEPQPGERILDLCASP 404 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FD 308 GGKT + + + + A D+++ R+ L N+ RL + + +D +Y FD Sbjct: 405 GGKTTYVAALMKNTGTLVANDINEERMRSLVANIHRLGVKNTIVSNLDGREYPKTMGGFD 464 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364 LVDAPC G I + + ++ D+ Q++L+L I V GGI+V+S Sbjct: 465 RCLVDAPCVGLGVIAKDQQIKLSKSQRDVDLCVNMQKELILHAIDSVDAKSPTGGIIVYS 524 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEK 422 CSL +++E VV LR+ V L+ + + R P + ++ Sbjct: 525 TCSLTVEENEGVVDYALRNR--DVILLDTGVEFGV-----QGFTAYRHHRFHPSVALTKR 577 Query: 423 IDGVSSGMDGFFAVALRRL 441 + MDGF+ +++ Sbjct: 578 YYPHTHNMDGFYVAKFKKI 596 >gi|326468870|gb|EGD92879.1| nucleolar protein NOP2 [Trichophyton tonsurans CBS 112818] Length = 690 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + + + + A + +L + + Sbjct: 238 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + + +A SP I + ++ + + A L + + Sbjct: 285 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + A D SK R + L N+ RL + MDA PK + FD VL+DAP Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 464 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHTSKTGGYIVYSTCSVTVE 524 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + ++ + R P + + +D Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMNKKFDDR-MP-LTRRYYPHRENVD 581 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 582 GFFVCKLKK 590 >gi|237837991|ref|XP_002368293.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii ME49] gi|211965957|gb|EEB01153.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii ME49] Length = 804 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 120/322 (37%), Gaps = 25/322 (7%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG 201 E + + A +A + L A L A Sbjct: 280 YYQYRPELVEYFLQLFKPQEAYAFFEANEENRPMTLRTNSLKTRRRDLAAALIARGCNVD 339 Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + + + P + G + +Q A++ IPV V+D+ AAPG Sbjct: 340 PLGEWTKVGLKVYESTVPVGATPEYLAGHYMLQSAASLIPVMALAPQPGEKVVDMAAAPG 399 Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDA 309 GKT + + + A D K R L NL RL + + +D D Sbjct: 400 GKTTYIAQLLKNEGILFANDAKKERCTSLMANLHRLGVTNCIVSCVDGRTLPTMLPPMDR 459 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSN 365 L+DAPC+ +G I R P + R +D + + Q++LL + V GG +V+S Sbjct: 460 ALLDAPCTGSGIIARDPSIKVKRKPEDFAEHSKLQKQLLCAAVDAVNADSPTGGYIVYST 519 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ +++E+VV +L + V+LVPL + + + P + Sbjct: 520 CSVSVEENEQVVDYILTAR--NVKLVPLGVDI--GVPGLSGFRGQQFHNSVPLYTRRFYP 575 Query: 426 VSSGMDGFFAVALRRLI--QPK 445 + DGFF ++L +P+ Sbjct: 576 HVNNFDGFFVAKFKKLSNKKPE 597 >gi|225461969|ref|XP_002266863.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 633 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 34/326 (10%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 E+ L + ++ + +A P I L A L + Sbjct: 205 YYGYNEFLIGVLVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLLNRGVNLD 264 Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + I + P + G + V AS+ +PV ++D+ AAPG Sbjct: 265 PLSKWSKVGLVVYDSQVPIGATPEYMAGFYMVSGASSFLPVMALAPQEKERIVDMAAAPG 324 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A ++ + RL+ L NL R+ + + D + Sbjct: 325 GKTTYIAALMKNSGMIFANEMKEPRLKSLTANLHRMGVTNTVVCNYDGKELPKVLGHNTV 384 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V ++ +DI K A Q++L+L I V K GG +V+ Sbjct: 385 DRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAHLQKQLILAAIDMVDANSKSGGYIVY 444 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 S CS+ ++E V+ L+ + + L + + + S E R P + Sbjct: 445 STCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFTRFREHRFHQSLEKTRRFYPHV- 503 Query: 421 EKIDGVSSGMDGFFAVALRRL--IQP 444 MDGFF L+++ +P Sbjct: 504 -------HNMDGFFVAKLKKMSNSKP 522 >gi|156383674|ref|XP_001632958.1| predicted protein [Nematostella vectensis] gi|156220021|gb|EDO40895.1| predicted protein [Nematostella vectensis] Length = 415 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 76/319 (23%), Positives = 123/319 (38%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199 E+ E+ + ++ +A + + A L + Sbjct: 93 CTYYSYGEFLMEKFLEMFQLNELIEFLEANEVHRPVTIRTNSLKTRRRDLAQALINRGVN 152 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q +S+ +PV VLD+CAA Sbjct: 153 LDPVGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGSSSMLPVMALAPQEKERVLDMCAA 212 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT L + + V A D K R + L N+ RL + + D + F Sbjct: 213 PGGKTTYLAALMKNTGIVVANDAKKERTKALVANIHRLGVTNTVVCNYDGRAFPKVMGGF 272 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D L+DAPCS TG I + P V + DI++ + Q++L+L I V GG +V+ Sbjct: 273 DRTLLDAPCSGTGVISKDPSVKTNKTEKDILRCSHVQKELILAAIDSVDAKSPTGGYIVY 332 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ ++ E VV L V+LVP + + S P + Sbjct: 333 STCSIMVEEDEWVVDYALSKR--HVKLVPTGLDFGR-----EGFSKFRGRHFHPSLKLTR 385 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + MDGFF L++ Sbjct: 386 RFYAHAHNMDGFFVAKLKK 404 >gi|119499195|ref|XP_001266355.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya fischeri NRRL 181] gi|119414519|gb|EAW24458.1| nucleolar RNA methyltransferase (Nop2), putative [Neosartorya fischeri NRRL 181] Length = 750 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 271 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 330 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 331 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK Sbjct: 391 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGG 450 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V +++ D + QR LLL I V K GG +V Sbjct: 451 FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHASKTGGYIV 510 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VLR P V+LV + S + + ++T + + Sbjct: 511 YSTCSVTVEENEAVVQYVLRKRPN-VKLVDTGLGDFGSPGFTSYMGKKFDPKMT--LTRR 567 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGFF L++ Sbjct: 568 YFPHRENVDGFFVCKLKK 585 >gi|70985320|ref|XP_748166.1| nucleolar RNA methyltransferase (Nop2) [Aspergillus fumigatus Af293] gi|66845794|gb|EAL86128.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus fumigatus Af293] gi|159125911|gb|EDP51027.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus fumigatus A1163] Length = 751 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 137/318 (43%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 271 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 330 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 331 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK Sbjct: 391 PGGKTTYISALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGG 450 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V +++ D + QR LLL I V K GG +V Sbjct: 451 FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHASKTGGYIV 510 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ LR P V+LV + S + + ++T + + Sbjct: 511 YSTCSVTVEENEAVVQYALRKRPN-VKLVDTGLGDFGSPGFTSYMGKKFDPKMT--LTRR 567 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGFF L++ Sbjct: 568 YFPHRENVDGFFVCKLKK 585 >gi|85708834|ref|ZP_01039900.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1] gi|85690368|gb|EAQ30371.1| tRNA and rRNA methylase [Erythrobacter sp. NAP1] Length = 393 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 148/453 (32%), Gaps = 77/453 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ K L+ + + +D+ VR +V Sbjct: 1 MTP--AARVQAAIELLDAIIEGARNKGAPADRLISEYFKARRYAG--SKDRRAVRELVYR 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R L +P S L Sbjct: 57 AVR------------LCGPVPADGRSAMLAL----------------------------- 75 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 NR + + + I + A + P W ERL G E A++ +P Sbjct: 76 SNRDESLVPLFDGSTHGPQTIAPNETSAETGVAPHWLIERLSIS-GIESDEAMALLDRAP 134 Query: 176 LYIDLTV-KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 L I + K D T L + + +G+ +QD + Sbjct: 135 LDIRVNALKADRGTIELPEEGEPLIASQGLRFASGTQVEQWREWRDGLVEIQDHGSQWVC 194 Query: 235 QLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + +V+DLCA GGKT A + + A D KRRL L R + Sbjct: 195 EAVLAQPGDAVIDLCAGAGGKTLALAARFGNAVSLIAADTDKRRLGNLAPRASRAGAQVD 254 Query: 292 DIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + ++ D VLVDAPCS +GT RR+P+ W D ++V+ Q Sbjct: 255 HTVLLNPGREIEALEPWVGKADHVLVDAPCSGSGTWRRNPESRWRLDKAELVRFTKLQAH 314 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L V+PGG + F CSL ++ V L + +++ + Sbjct: 315 VLDIAAKLVRPGGSITFVTCSLLDEEGSGQVDAFLDRHSGW---------EAEGLELPVG 365 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 IR+TP G DGFF LR Sbjct: 366 RRRGKGIRLTP--------YHDGTDGFFVANLR 390 >gi|99081068|ref|YP_613222.1| Fmu (Sun) [Ruegeria sp. TM1040] gi|99037348|gb|ABF63960.1| Fmu (Sun) [Ruegeria sp. TM1040] Length = 391 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 92/452 (20%), Positives = 150/452 (33%), Gaps = 77/452 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L ++ ++ L S F +D+ VR V LR Sbjct: 1 MTPG--ARVQAAIEILDEILA-GQAVEKTLTNWARRSRFAG--SKDRAAVRDHVYQALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + L + D ++QA H Sbjct: 56 RRSYAVLGGSETGRG-----------LMLGA------------CKDQGLDQAVLFHGEGH 92 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +++ + ++ E A IPEW G E +A + A S + Sbjct: 93 APSPLSAAEQSIAPEFHSD----AERHDIPEWLWPVFSRSLGTE-AIAAATALRSRAAVH 147 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDAS 229 L V D + +L + T + E I + + +G +QDA+ Sbjct: 148 LRVNLLKGDRDNAIKRLTREGIATEPHPASPTALTVTEGARRIKNAESYLQGFVELQDAA 207 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V N +LD C+ GGK A + A+V A D RR+ + R Sbjct: 208 SQAVVDKLPVQNAPRILDYCSGGGGKALAIAAQTQAEVYAHDADPRRMRDIPERAMRAGA 267 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I + + + + FD VL DAPCS +G+ RR P+ W D + + Q ++L Sbjct: 268 D---IRCLTSEELVTQAPFDLVLCDAPCSGSGSWRRDPEGKWRLTQDTLDDTVALQARIL 324 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + V PGG++ F+ CS+ ++ Q+ Sbjct: 325 DEAAQRVAPGGVLAFATCSMLDVENSLQTQRFQERHTGWA-------------------- 364 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + E V SG DGF+ RR Sbjct: 365 ---------HLSETAWHVHSGTDGFYVSVFRR 387 >gi|212275840|ref|NP_001130579.1| hypothetical protein LOC100191678 [Zea mays] gi|194689536|gb|ACF78852.1| unknown [Zea mays] Length = 718 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 125/318 (39%), Gaps = 26/318 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E L + ++ + +A L A L Sbjct: 235 YYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKSRRRDLAAALIPRGFNLD 294 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 295 PIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 354 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + I D + Sbjct: 355 GKTTYIGALMKNTGIIYANEFNEKRLHGLMGNIHRMGVTNTIICNYDGKELPKVLGMNSV 414 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TGTI + + ++D +DI A Q++LLL I V K GG +V+ Sbjct: 415 DRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDANSKTGGYIVY 474 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS+ ++E V+ L+ V+LVP + + E + + + Sbjct: 475 STCSIMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRYREHRFHTSLEKTRRF 529 Query: 424 DGVSSGMDGFFAVALRRL 441 + MDGFF L++L Sbjct: 530 YPHVNNMDGFFVAKLKKL 547 >gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] gi|151281196|gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] Length = 437 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 108/442 (24%), Positives = 180/442 (40%), Gaps = 51/442 (11%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + ++L L + + + + + ++ + +R + R +A+L+ + Sbjct: 26 RGVALPQALAQIFAQTHA---TPQARGAIQDLSYHCMRHIGRAEALLNAMTTKQTE--PA 80 Query: 81 SLQQLLRVSVAQILYLDVA-------DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 L LL ++A I D A + VVD AV A D + H +VN++LRR R Sbjct: 81 ILHGLLCCALALISDPDEAESEARYSAFTVVDQAVTAAAADPDMAHAKGMVNAVLRRFLR 140 Query: 134 EKI----ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET- 188 E+ P+W+ +R+ + Y + AI +A + + L V T Sbjct: 141 ERDALLKSAGGTQFARWNYPDWWIDRMRSAYPQNW-QAILEAGNAAPPLTLRVNRRKTTV 199 Query: 189 ------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 A + A P + +PGF EG+ VQDA+A + L + Sbjct: 200 DAYLALLAEQSVAATRIGPDAVKLAQPTPVGQIPGFNEGLVSVQDAAAQLAASLLDLRDG 259 Query: 243 LSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFD 300 + VLD CAAPGGK+ + + ++ ALD RR+ ++ NL+RL L A + A D Sbjct: 260 MRVLDACAAPGGKSGHILESADVELIALDNEARRMPRIAENLERLQLQATLLTGDASATD 319 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + K FD +L D PC+++G +RRHPD+ W R D + A +L ++P G Sbjct: 320 WWDGKPFDRILADVPCTASGIVRRHPDIRWLRRKGDTTQLAAISATILDNLWQMLQPDGK 379 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 ++F CSL Q+SE + P ++ P Sbjct: 380 LLFVTCSLWPQESEAQAAAFAVRNNATRLPAPG--------------------QLLP--- 416 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 S DG F ++ + Sbjct: 417 --TANAESDHDGLFYALFQKTV 436 >gi|328955666|ref|YP_004372999.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2] gi|328455990|gb|AEB07184.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2] Length = 470 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 165/459 (35%), Gaps = 54/459 (11%) Query: 19 MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK 78 ++ + + LLD D R L +RD + +D V+D L R Sbjct: 22 YQRGVHVRELLDGVARD---RHLDRRDAAFAMRLALGATVTSGALDEVIDMHLDHP-RRV 77 Query: 79 KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 ++ LR++ +++YL+ V VE R L N++LRRV+ + Sbjct: 78 SARVRIALRIAAFELIYLERPPAVAVSQGVELVGSI--ARSATGLANAVLRRVATSRRSY 135 Query: 139 ------------LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 + +A + +P W +E G E + D ++ I + + Sbjct: 136 LAAADAPLKDRRVVSLARCAGMPVWLAGAIEGSLGPELAGRLFDTQLTAAPIAIHLNPLR 195 Query: 187 ETWA-HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 E+ K+ + G PE + S + I + Sbjct: 196 ESADFAKVLGSIELPGCAGPVPGPELLASSALERGDAVVSDAVAQLIATAATAV---GTC 252 Query: 246 LDLCAAPGGKTAQLIVSGAK------VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA 298 L++ + G KT + + ALD+ RR E L R L + D Sbjct: 253 LEIGSGRGTKTFVMASQAHRAGFARHHVALDIDSRRAESCGQRLRRAGLDEGVRTLVADG 312 Query: 299 FD-------YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS-ACFQRKLLLQ 350 D ++LF+ V VDAPCS TGT+RRHP++ W D+ + QR LL Sbjct: 313 CDLEGALGDSDRRRLFETVFVDAPCSGTGTMRRHPEICWRLRPCDVERGLPDLQRALLAS 372 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVL------RSSPIPVELVPLNSAYWKSIDMA 404 S V GG +++S CS+ ++++V+ L V P+ + + Sbjct: 373 AASRVAMGGQLLYSTCSVLSSENDDVIDDFLGGETGRAFRLDRVSAAPILRSAGFADAKR 432 Query: 405 MALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A + E G ++ + DG F L R Sbjct: 433 FAETLESARGTLQ--------SVPRTGDFDGHFCARLIR 463 >gi|241173797|ref|XP_002410886.1| nucleolar protein, putative [Ixodes scapularis] gi|215495039|gb|EEC04680.1| nucleolar protein, putative [Ixodes scapularis] Length = 420 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 19/247 (7%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + P + G + +Q A++ +PV N +LD+CAAPGGKT + + Sbjct: 33 VYNSQVPVGATPEYLAGHYVLQGAASMLPVMALAPQENERILDMCAAPGGKTTHIAAIMK 92 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTG 320 + + A ++ + R + + NL RL + + D + FD VL+DAPCS TG Sbjct: 93 NTGLLFANELHQERCKAIIGNLHRLGVNNTIVCSYDGRKFPEVVKGFDRVLLDAPCSGTG 152 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV-----KPGGIVVFSNCSLDKQDSEE 375 + + P V ++ DI++ + Q++L+L I KP G +V+S CS+ +++E Sbjct: 153 VVSKDPAVKTNKEEKDILRCSQLQKQLILAAIDCADCSDNKP-GYIVYSTCSVMPEENEW 211 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSSGMDGF 433 V+ L+ V+LVP + + L+ R P + + + M+GF Sbjct: 212 VIDYALKKR--NVKLVPTGLDFGR-----EGLTRYREYRFHPSLNRTRRFYPHAHNMEGF 264 Query: 434 FAVALRR 440 F L++ Sbjct: 265 FVAKLKK 271 >gi|229544321|ref|ZP_04433380.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1] gi|229325460|gb|EEN91136.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1] Length = 458 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 19/248 (7%) Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--- 259 E + P A G++++Q+ SA G VLDLCAAPGGK+ Q+ Sbjct: 63 YYFDEEKDKPGKHPYHAAGLYYIQEPSAMFIAGQLGLEKGDKVLDLCAAPGGKSTQIASG 122 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCS 317 I + A ++ +R+ L N++RL + + + FD +LVDAPCS Sbjct: 123 IGENGFLLANEIHPKRVRALSENIERLGFSNTVVTNETPEKLSRHFENYFDKILVDAPCS 182 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P+ + + A QR +L +KPGG +V+S C+ +++E+ + Sbjct: 183 GEGMFRKDPEAARFWSQEHVEACAQKQRAILEHAWKMLKPGGTLVYSTCTFSPEENEQTI 242 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGMDG 432 + L + LVP+ + + + R+ P L+ G Sbjct: 243 EAFLARH-EDMALVPIPHEHGVGPGKPEWATEKRQDLSNAARLWPHRLKGE--------G 293 Query: 433 FFAVALRR 440 FA +R+ Sbjct: 294 HFAAKMRK 301 >gi|58263482|ref|XP_569151.1| nucleolus protein [Cryptococcus neoformans var. neoformans JEC21] gi|134108332|ref|XP_777117.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259802|gb|EAL22470.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223801|gb|AAW41844.1| nucleolus protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 695 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 132/338 (39%), Gaps = 25/338 (7%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 + S ++L IA + +L + + LA ++ SP + + Sbjct: 289 PGKSRSDHMLQLQHDIATYFGYNTFLVGKLMKLFAADEALAFFESNESPRPVTIRANTLR 348 Query: 185 -DIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L + I ++ E P I + P + G + +Q AS+ +PV Sbjct: 349 TRRRDLAQALINRGVTLEPIGKWSKVGLQVFESPVPIGATPEYLAGHYMLQAASSFLPVI 408 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 N VLD+ +APGGKT + + V A D +K R + L N+ R+ Sbjct: 409 ALAPQPNERVLDMASAPGGKTTYISALLQNTGIVFANDSNKARTKSLTANVHRMGCKNVV 468 Query: 293 IIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + DA ++ FD VL+DAPCS TG I + V + D A Q++L+L Sbjct: 469 VCNYDAREFPKVMGGFDRVLLDAPCSGTGVISKDASVKVNKTERDFQLLAHLQKQLILCA 528 Query: 352 ISFVKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 I V P GG VV+S CS+ ++E VV LR P V L Sbjct: 529 IDSVNPNSSTGGYVVYSTCSVTVDENESVVDYALRKRPN----VKLVETGLDFGVHGFKS 584 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + + MDGFF + ++P+ Sbjct: 585 FEGKNFHSSVSLTRRFYPHKHNMDGFFVAKFK--VEPR 620 >gi|326334933|ref|ZP_08201134.1| sun protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692970|gb|EGD34908.1| sun protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 405 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 159/459 (34%), Gaps = 77/459 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ N + + + +++ +D+ + + +R+L Sbjct: 1 MRLHRNLVDAVVDGFMQINNEGLYADKVIERLLKRDKRWG--SKDRAFIAETLYELVRYL 58 Query: 61 PRIDAVLDFVLISSLPRKKYS--LQQLLR-VSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 + + ++ + + +LR +S+ + + + Sbjct: 59 RLYSEIATEKVPYTVQSSRRVFAVWAVLRGISLPEWYFEGTPE----------------- 101 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 RR+ EL +P+W + G+E A A Sbjct: 102 -----------RRIKGRFDELSHERKYRESVPDWLDTLGASELGEEAWSAELHALNQIAP 150 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDA 228 + L E L A T +R + ++ F +G++ +QDA Sbjct: 151 VVLRANTLKTTPEELQKILLAQGYETERLRGIPDALVLAKRANLFLTDAFKQGLFELQDA 210 Query: 229 SASIPVQLFGTLNNL----SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRC 281 S+ L + + D CA GGKT L+ ++ A+D+ ++L++L Sbjct: 211 SSQRVAPLLLQDLDKGKSLKIADCCAGAGGKTLHLAALMQGKGRLVAMDLYPQKLQELSR 270 Query: 282 NLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R + + ++ + FDAVL+DAPCS G +RR+PD W + + + Sbjct: 271 RAKRNGAFNIETRLIEPKYLKRHRGAFDAVLIDAPCSGLGVLRRNPDAKWKLTPEFLDQI 330 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QR++L Q S V GG +V++ CS+ ++ VQ L+SS Sbjct: 331 RTTQREILQQYSSLVGEGGTLVYATCSVLPSENHLQVQAFLQSSK--------------- 375 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L E I + G DGF+ ++ Sbjct: 376 -GSDFSLVEERMI-----------SATEGFDGFYIAKMK 402 >gi|326480150|gb|EGE04160.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Trichophyton equinum CBS 127.97] Length = 690 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + + + + A + +L + + Sbjct: 238 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + + +A SP I + ++ + + A L + + Sbjct: 285 LAEKLFSLFTPMEASSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + A D SK R + L N+ RL + MDA PK + FD VL+DAP Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 464 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHTSKTGGYIVYSTCSVTVE 524 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + ++ + R P + + +D Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMNKKFDDR-MP-LTRRYYPHRENVD 581 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 582 GFFVCKLKK 590 >gi|261214774|ref|ZP_05929055.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260916381|gb|EEX83242.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 252 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 1/224 (0%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + G+ ARL ++ LL V+ K SL L D +G + L RD+ LVRAI+ LR Sbjct: 26 RPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGHPQYLALEPRDRALVRAILGSALRNRG 85 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I+ ++ L LP +L+ LL V+VAQI YLD+ D++ VDLAVE A D NR +A Sbjct: 86 SIERAINKRLDRPLPENAVALKHLLHVAVAQIFYLDLPDHSAVDLAVEAANSDPRNRKYA 145 Query: 122 KLVNSILRR-VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR ++ L + +PEWF + + + YG E+ I ID Sbjct: 146 GLVNALLRRLARNKERALAHTFEPEANVPEWFAKSITDAYGTEKAATILAMHAYEPPIDF 205 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 TVK D + WA KL V LP G +RL+ + ++ LPGFAEG WW Sbjct: 206 TVKGDAKAWAEKLGGVALPNGSVRLQTVEGNLTDLPGFAEGEWW 249 >gi|330818681|ref|YP_004362386.1| Sun protein [Burkholderia gladioli BSR3] gi|327371074|gb|AEA62430.1| Sun protein [Burkholderia gladioli BSR3] Length = 476 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 99/412 (24%), Positives = 171/412 (41%), Gaps = 30/412 (7%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSV----AQILYLDVADY 101 + ++ I +R L + ++ ++ + P +L + A+ Y + Sbjct: 77 RGAIQDIAYRAMRRLGTAEWLVGALVSKAPPEHVRALLACALALLLDDEAEAAYT---PF 133 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG----ISIIPEWFKERLE 157 VVD AV +E LVN++LRR RE+ + W+ + +E Sbjct: 134 TVVDQAVTAVGARREFAFAKGLVNAVLRRFLRERETFAAQWQADRGARWNYRGWWIDAVE 193 Query: 158 NFYGKERVLAISDACISPL-YIDLTVKF-DIETWAHKLNAVMLPTGGIRLKE----LPES 211 + + ++ A + + + D++ + L + + P Sbjct: 194 RAWPEHWQSILAAAERPGPLTLRVNARHTDVDAYLATLREHGIEADAVGRHAVRLASPLP 253 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALD 270 + +PGFA+GV VQDA A + + G + + VLD CAAPGGKT L+ + +V AL+ Sbjct: 254 VDRIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHLLELADVEVVALE 313 Query: 271 VSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 R E++ NL RL L AE + + FD +L D PCS++G +RRHPD+ Sbjct: 314 SDATRAERIGENLARLKLAAEVRVGDAGAPEAWHDGRAFDRILADVPCSASGIVRRHPDI 373 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W R DI QR++LL +KPGG +++ CS+ ++ E+ + + V Sbjct: 374 RWLRREADIAALVAEQRRILLALWPLLKPGGELLYVTCSIFPEEGEQQARWFEDAVQDAV 433 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L ++ R+ D + DGFF ++ Sbjct: 434 RLDAPGQLLPRAAAS----------RLPGDAGHDEAARQADHDGFFYARFQK 475 >gi|222423014|dbj|BAH19490.1| AT5G55920 [Arabidopsis thaliana] Length = 625 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 21/250 (8%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + I + P + G + +Q AS+ +PV N ++D+ AAPGGKT + + Sbjct: 323 IYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMK 382 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 + + A ++ RL+ L NL R+ + + D + + D VL+DAPCS Sbjct: 383 NTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSG 442 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374 TG I + V T+ D+I K A Q++LLL I V K GG +V+S CS+ ++E Sbjct: 443 TGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENE 502 Query: 375 EVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 V+ L+ + + L + + + S + R P + MD Sbjct: 503 AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHV--------HNMD 554 Query: 432 GFFAVALRRL 441 GFF L+++ Sbjct: 555 GFFVAKLKKM 564 >gi|30696661|ref|NP_850927.1| nucleolar protein, putative [Arabidopsis thaliana] gi|9758212|dbj|BAB08657.1| nucleolar protein-like [Arabidopsis thaliana] gi|332009316|gb|AED96699.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] Length = 682 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 21/250 (8%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + I + P + G + +Q AS+ +PV N ++D+ AAPGGKT + + Sbjct: 323 IYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMK 382 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 + + A ++ RL+ L NL R+ + + D + + D VL+DAPCS Sbjct: 383 NTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSG 442 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374 TG I + V T+ D+I K A Q++LLL I V K GG +V+S CS+ ++E Sbjct: 443 TGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENE 502 Query: 375 EVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 V+ L+ + + L + + + S + R P + MD Sbjct: 503 AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHV--------HNMD 554 Query: 432 GFFAVALRRL 441 GFF L+++ Sbjct: 555 GFFVAKLKKM 564 >gi|156936862|ref|YP_001434658.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I] gi|156565846|gb|ABU81251.1| ribosomal RNA methyltransferase NOP2 [Ignicoccus hospitalis KIN4/I] Length = 326 Score = 153 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 67/261 (25%), Positives = 123/261 (47%), Gaps = 13/261 (4%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +E+ L V+ + P S+ S P +G +++QD ++++P + G +V Sbjct: 74 LESRGFVLKQVLWCPHAYEVLREPFSLSSTPEHLDGWFYIQDKASTLPPLVLGPKPGETV 133 Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 DL +APGGK L + + ++ ++ + R + L NL+R+ + ++I DA++ Sbjct: 134 ADLASAPGGKATHLAQLMGNSGRLILIERRRDRAKALMSNLERMEILNANVIIDDAYNAS 193 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD L+DAPC+ G I R P +R +D+ Q LL + + +KPGG +V Sbjct: 194 KYGPFDKALLDAPCTGEGVIARDPSRKRSRRPEDLALMHKVQAMLLNRALDSLKPGGELV 253 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDML 420 +S CS+ +++E V++ +L++ L + + P R+ P + Sbjct: 254 YSTCSIAPEENELVIETILKTRDDVEVLDGGEAGSPGIEEYLGWEFPFAYKCRRLWPHV- 312 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G +GFF LR+L Sbjct: 313 -------HGSEGFFVCKLRKL 326 >gi|310794553|gb|EFQ30014.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001] Length = 741 Score = 153 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 81/319 (25%), Positives = 135/319 (42%), Gaps = 27/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 E+ E+L N + A +A S + + ++ A L + + Sbjct: 268 CAYYGYSEYLAEKLFNLFSPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALISRGVT 327 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + ++ E + + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 328 LEPVGKWSKVGLQIFESNVPLGATPEYLAGYYILQAASSFLPVMALEPQENERVLDMAAA 387 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLF 307 PGGKT + + + + A D SK+R + L N+ RL + DA ++ P F Sbjct: 388 PGGKTTHMAAMMKNTGVIVANDPSKQRAKGLIGNIHRLGARNVVVSNYDAREFPKPMGGF 447 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V + D + Q++L+L I V K GG +V+ Sbjct: 448 DRVLLDAPCSGTGVIAKDASVKTNKTERDFMLLPHMQKQLILAAIDSVNHHSKTGGYIVY 507 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ +++E VVQ L P V LV N + + + + P + Sbjct: 508 STCSVTVEENEAVVQYALSRRPN-VRLVDTNLPFGR-----EGFTSYMGKKFDPSLKLTR 561 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + +DGFF ++ Sbjct: 562 RYYPHTYNVDGFFVAKFQK 580 >gi|170697712|ref|ZP_02888799.1| sun protein [Burkholderia ambifaria IOP40-10] gi|170137327|gb|EDT05568.1| sun protein [Burkholderia ambifaria IOP40-10] Length = 462 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 98/444 (22%), Positives = 168/444 (37%), Gaps = 48/444 (10%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 R+ +L L + + + + T+R L D ++ ++ + P Sbjct: 43 RRGTALPAALAAVFAQMP-AGAQALARGATQDVAYRTMRRLGSADWLIGRLVGKAPPAHV 101 Query: 80 YSLQQLLR--------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + +VD AV +E LVN++LRR Sbjct: 102 QAVLAGALALLLDPEETAAY-------PAFTIVDQAVTVIGARREFAFAKGLVNAVLRRF 154 Query: 132 SREKIEL----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 RE+ L W+ + ++ + ++ + L V Sbjct: 155 QRERDALVAALQDDPVARWNYRPWWIDAVKRAWPDAWQAILAAGERQGP-LTLRVNARRA 213 Query: 188 TWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + L+ + +PGFA+GV VQDA A + + G Sbjct: 214 SVDAYLDTLRANGIDATAIGRHAVRLASALPVDRIPGFADGVVSVQDAGAQLAAEWLGAR 273 Query: 241 NNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 + + VLD CAAPGGKT ++ +GA+V AL+ R ++ NL RL L A D+ D Sbjct: 274 DGMRVLDACAAPGGKTGHILELAGAEVVALESDATRAARIGENLARLSL-AADVRVGDAG 332 Query: 298 -AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD +L D PCS++G +RRHPD+ W R DI QR++L VK Sbjct: 333 APDAWYDGRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILTALWPLVK 392 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ ++ E + + V L + A + + Sbjct: 393 PGGELLYVTCSIFPEEGELQARWFEAACEDAVRLDAPGQLLPGGVPAGAAGALD------ 446 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 ++ DGFF ++ Sbjct: 447 ---------QNTDHDGFFYARFQK 461 >gi|83951869|ref|ZP_00960601.1| NOL1/NOP2/sun family protein [Roseovarius nubinhibens ISM] gi|83836875|gb|EAP76172.1| NOL1/NOP2/sun family protein [Roseovarius nubinhibens ISM] Length = 384 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 79/443 (17%), Positives = 132/443 (29%), Gaps = 62/443 (13%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR ++ +L ++ ++ L + F +D+ VR V LR Sbjct: 1 MTP--AARYQTAAEILDEIL-GGVAAEKALTNWARRARFAG--SKDRAAVRDHVFDVLRQ 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 P + + LLR +D Sbjct: 56 R-------QSCAARGGPDGRGLILGLLR-------------GDGIDPDTVFTGDGYGPAV 95 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ + + E F + V+ + S Sbjct: 96 LSEAEREAGDAGDVLDLPAWIVAPMREALGEDFDRTEHALRERAPVMLRVNLAKSDPAAA 155 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 D A + + + E I + +G+ +QD S+ V Sbjct: 156 RAALADEGVIAEPVAGSAT---ALVVTEGARRIRLGRAYLDGLVELQDGSSQAAVAALAG 212 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD CA GGK+ L A++ A D R+ L R I +D Sbjct: 213 RAPARVLDYCAGGGGKSLALAALCSAEIYAHDADPARMSDLPERAARAGAD---ITRLDR 269 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + +D V+ D PCS +GT RR P++ W D+ Q ++L + + V PG Sbjct: 270 EEIAGHAPYDLVICDVPCSGSGTWRRTPEMKWRFSEADLAALVQTQAEILDEAAAHVAPG 329 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G + + CS+ +++E + P G R Sbjct: 330 GYLAYMTCSILAEENEAQAEGFGARHPGFALR--------------------GTRR---- 365 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 VS+ DGFF R+ Sbjct: 366 -----WPVSASGDGFFLAQFERV 383 >gi|134297372|ref|YP_001121107.1| sun protein [Burkholderia vietnamiensis G4] gi|134140529|gb|ABO56272.1| sun protein [Burkholderia vietnamiensis G4] Length = 494 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 163/437 (37%), Gaps = 34/437 (7%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRK 78 R+ +L L + + + + + T+R L D ++ ++ Sbjct: 75 RRGTALPAALATVFAQMP-ADVRAFARGATQDVAYRTMRRLGSADWLIGRLVSKAPPAHV 133 Query: 79 KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 L L + + + VVD AV +E LVN++LRR RE+ L Sbjct: 134 HAVLAGALALLLDPADAAAYPAFTVVDQAVTVIGARREYAFAKGLVNAVLRRFERERDTL 193 Query: 139 ----LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194 W+ + ++ + ++ + L V + L+ Sbjct: 194 VAALQDDPVARWNYRPWWIDAVKRAWPDAWQAVLAAGDRQGP-LTLRVNARRASVDAYLD 252 Query: 195 -------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + +PGF +GV VQDA A + + G + + VLD Sbjct: 253 TLRANGIDATAIGRHAVRLASALPVDRIPGFGDGVVSVQDAGAQLAAEWLGARDGMRVLD 312 Query: 248 LCAAPGGKTAQLIV-SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCP 303 CAAPGGKT ++ + V AL+ R E++ NL RL L A D+ D + Sbjct: 313 ACAAPGGKTGHILELADVDVVALESDAARAERIGENLARLSLSA-DVRVGDAGAPQAWYD 371 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD +L D PCS++G +RRHPD+ W R DI QR++L VKPGG +++ Sbjct: 372 GRPFDRILADVPCSASGIVRRHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGELLY 431 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 CS+ + E + + V L G +R Sbjct: 432 VTCSIFPDEGELQARWFEAACEDAVRLDAPGQLLP------------GGVR---GATAGA 476 Query: 424 DGVSSGMDGFFAVALRR 440 ++ DGFF ++ Sbjct: 477 LDPTTDHDGFFYARFQK 493 >gi|301119835|ref|XP_002907645.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora infestans T30-4] gi|262106157|gb|EEY64209.1| ribosomal RNA methyltransferase nop2-like protein [Phytophthora infestans T30-4] Length = 645 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 123/319 (38%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM-- 197 AG + + + +A P + + A L Sbjct: 204 AGYFGYNRELIDMFLKMFSPAECVEFVEANEQPRPLVIRTNTLKARRRDLAQALIQRGVN 263 Query: 198 ------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 G+++ + P I + P + G + +Q AS+ V N VLD+ A Sbjct: 264 LDPLAKWSKVGLKIYDSPVPIGATPEYLAGHYMLQSASSICAVMALAPQMNERVLDMACA 323 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGKT + + + V A D+ K+RL+ NL RL + + D F Sbjct: 324 PGGKTTYIAQLMKNTGTVIANDLKKQRLKATVANLHRLGVKNTSVSCYDGRKVPSLFKGF 383 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ G I R P + + D+ + A Q++LLL I V K GG +++ Sbjct: 384 DRVLLDAPCTGMGVIARDPSIKTQKGEKDVQRLAHLQKELLLAAIDAVDAKSKTGGYILY 443 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR V+LV + K + R P + Sbjct: 444 STCSVMVDENESVVDYALRKR--CVKLVDTGLDHGKP-----GFTRYQQQRFHPSVQLTR 496 Query: 422 KIDGVSSGMDGFFAVALRR 440 + MDGF+ ++ Sbjct: 497 RFYPHVHNMDGFYVAKFKK 515 >gi|289620653|emb|CBI52784.1| unnamed protein product [Sordaria macrospora] Length = 744 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 151/372 (40%), Gaps = 42/372 (11%) Query: 92 QILYLDVADYAVV-DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150 Q+L + D V D A+ K + +L++ I E Sbjct: 225 QMLRTRITDAIRVLDDFSSLAEEGK--------------SRAEYTSQLIKDICAYYGYNE 270 Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI---- 203 + E+L N + A +A S + + ++ A L + + Sbjct: 271 FLAEKLFNLFPPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWS 330 Query: 204 ----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 ++ + + + P + G + +Q AS+ +PV VLD+ +APGGKT + Sbjct: 331 KVGLQVFDSNVPLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASAPGGKTTHM 390 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAP 315 + + + A D SK+R + L N+ RL + DA ++ FD VL+DAP Sbjct: 391 AALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMGGFDRVLLDAP 450 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V RD D ++ Q++LLL I V K GG VV+S CS+ + Sbjct: 451 CSGTGVIAKDPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVYSTCSVAVE 510 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSG 429 ++E+VV L P V+LV A+ K + P + + Sbjct: 511 ENEQVVAYALSRRPN-VKLVETGLAFGK-----EGFTSFMGKSFHPSLKLTRRYYPHLYN 564 Query: 430 MDGFFAVALRRL 441 +DGFF ++L Sbjct: 565 VDGFFVAKFQKL 576 >gi|302915517|ref|XP_003051569.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI 77-13-4] gi|256732508|gb|EEU45856.1| hypothetical protein NECHADRAFT_38896 [Nectria haematococca mpVI 77-13-4] Length = 673 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 27/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 E+ E+L N + A +A S + + ++ A L + Sbjct: 274 CAYYGYSEYLAEKLFNLFTPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVT 333 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + ++ E + + P + G + +Q AS+ +P N VLD+ AA Sbjct: 334 LEPVGKWSKVGLQVFESNVPLGATPEYLAGHYILQAASSFLPCMALEPQENERVLDMAAA 393 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLF 307 PGGKT + + + + A D +K R + L N+ RL + DA ++ P F Sbjct: 394 PGGKTTYMAAMMKNTGVIVANDPNKARAKGLIGNIHRLGTRNVVVSNYDAREFPKPMGGF 453 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V + D ++ Q++L+L I V K GG +V+ Sbjct: 454 DRVLLDAPCSGTGVIAKDPSVKTNKTERDFMQLPHIQKQLVLAAIDSVNHASKTGGYIVY 513 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ +++E+VVQ L P V LV + K + + P Sbjct: 514 STCSVTVEENEQVVQYALSRRPN-VRLVESGLPFGK-----EGFTSYMGKKFDPSMRHTR 567 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + + +DGFF ++ Sbjct: 568 RYYPHTYNVDGFFVAKFHKI 587 >gi|85119485|ref|XP_965642.1| hypothetical protein NCU02511 [Neurospora crassa OR74A] gi|28927454|gb|EAA36406.1| hypothetical protein NCU02511 [Neurospora crassa OR74A] Length = 746 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 27/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 E+ E+L N + A +A S + + ++ A L + Sbjct: 271 CAYYGYNEYLAEKLFNLFPPREAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVT 330 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + ++ + + + P + G + +Q AS+ +PV VLD+ +A Sbjct: 331 LEPVGKWSKVGLQVFDSNVPLGATPEYLAGHYILQAASSFLPVMALCPQEGERVLDMASA 390 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D SK+R + L N+ RL + DA ++ F Sbjct: 391 PGGKTTHMAALMKNTGVIFANDPSKQRAKGLIGNIHRLGARNVIVCNYDAREFPRVMGGF 450 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V RD D ++ Q++LLL I V K GG VV+ Sbjct: 451 DRVLLDAPCSGTGVIAKDPSVKTNRDEKDFLQLPHLQKQLLLAAIDSVDHASKTGGYVVY 510 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ +++E+VV L P V+LV A+ K + P + Sbjct: 511 STCSVAVEENEQVVAYALSRRPN-VKLVETGLAFGK-----EGFTSFMGKSFHPSLKLTR 564 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + +DGFF ++L Sbjct: 565 RYYPHLYNVDGFFVAKFQKL 584 >gi|315049127|ref|XP_003173938.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS 118893] gi|311341905|gb|EFR01108.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS 118893] Length = 696 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 141/319 (44%), Gaps = 23/319 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L + + + +A SP I + ++ + + A L + Sbjct: 276 CVYYGYTPYLAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVV 335 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + ++ E P + + P + G + +Q AS+ +PV + +LD+ AA Sbjct: 336 LEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAA 395 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGKT + + + A D SK R + L N+ RL + MDA PK + Sbjct: 396 PGGKTTYASALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGG 455 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPCS TG I + P V ++ D + Q++LLL I K GG +V Sbjct: 456 FDRVLLDAPCSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIV 515 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ LR P V++V + + ++ + + P + + Sbjct: 516 YSTCSVTVEENEGVVQYALRKRPN-VKIVDTGLGSFGTPGFKSYMNKKFDDK-MP-LTRR 572 Query: 423 IDGVSSGMDGFFAVALRRL 441 +DGFF L+++ Sbjct: 573 YYPHRENVDGFFVCKLKKI 591 >gi|240103453|ref|YP_002959762.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239911007|gb|ACS33898.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 309 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 17/304 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 W + L E+ L + + + + + G Sbjct: 16 ERYYELWGERALSIAEAMEKPLPRCFRVNTLRIEIPKLTKLLNKKGFQFRRIPWAREGFC 75 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 L P SI S P + G+ ++Q+AS+ P V D+ AAPGGKT+ L + Sbjct: 76 LTREPFSITSTPEYLSGLLYIQEASSMYPPVALEPKPGEVVADMAAAPGGKTSYLAQLME 135 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320 + + A DV + RL++ R NL RL + + + FD +L+DAPC+ +G Sbjct: 136 NEGIIYAFDVGEERLKETRLNLSRLGVTNTVLFHRSSLYIDELGVEFDKILLDAPCTGSG 195 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI ++P+ R +D+ Q K+L +G+S ++ GGI+V+S CSL+ +++E V+Q V Sbjct: 196 TIHKNPERKANRTIEDVKFCQNLQMKMLEKGLSVLRKGGILVYSTCSLEPEENEFVIQWV 255 Query: 381 LRSSPIPVELVPLNSAYWK-SIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + VEL+PL + + LS E R PD G GFF Sbjct: 256 LDNF--DVELLPLRYGEPALTRPFGIELSEEIKKARRFYPD--------RHGTSGFFVAK 305 Query: 438 LRRL 441 LR+L Sbjct: 306 LRKL 309 >gi|242770399|ref|XP_002341972.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces stipitatus ATCC 10500] gi|218725168|gb|EED24585.1| nucleolar RNA methyltransferase (Nop2), putative [Talaromyces stipitatus ATCC 10500] Length = 770 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D V + A + + A + +L + + Sbjct: 251 QLLRTRITDTLRV--LGDLATLGQPGQSRADYMQLLLDDICTY-----------YGYTPY 297 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L + + A +A P + + ++ + T A L + + Sbjct: 298 LAEKLMSLFTPMEAFAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSK 357 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N VLD+ +APGGKT + Sbjct: 358 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYIS 417 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL + +A + PK FD VL+DAP Sbjct: 418 ALMRNTGIVVANDASKARTKGLIGNIHRLGCKNTIVCNYNAQEAFPKILGGFDRVLLDAP 477 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 C+ TG I + P V + D + QR+LLL I K GG +V+S CS+ + Sbjct: 478 CTGTGVISKDPSVKTNKTERDFLAIPHLQRQLLLAAIDSTDHHSKTGGYIVYSTCSVTVE 537 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E+VVQ VLR P V++V + S + + ++T + + +D Sbjct: 538 ENEQVVQYVLRKRPN-VKIVDTGLGSFGSEGFTSYMGKKFDEKMT--LTRRYFPHRENVD 594 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 595 GFFVCKLKK 603 >gi|212223580|ref|YP_002306816.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212008537|gb|ACJ15919.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 371 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 84/301 (27%), Positives = 131/301 (43%), Gaps = 11/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 W + L E+ L + T+ + + V G Sbjct: 78 ERYYQLWGERALAIAEAMEKPLPRCFRVNTLRVEIPTLTKLLNKKGFQFRRVPWAREGFC 137 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 L P SI S P + G+ ++Q+AS+ P V D+ AAPGGKT+ L + Sbjct: 138 LTREPFSITSTPEYLSGLLYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMK 197 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 + + A DV + RL++ R NL RL + I + FD +L+DAPC+ +G Sbjct: 198 NEGIIYAFDVGEERLKETRLNLSRLGITNTILIHKSSLHMGELGIEFDKILLDAPCTGSG 257 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI ++P+ R +DI Q +++ + +KPGGI+V+S CSL+ +++E V+Q Sbjct: 258 TIHKNPERKSNRTMEDIKFCQGLQMQMIKVALENLKPGGILVYSTCSLEPEENEFVIQWT 317 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L S VEL+PL I + G I+ + G GFF LR+ Sbjct: 318 LDSF--DVELLPLRYGEPALI-KPFGVKLSGEIK----KARRFYPDRHGTSGFFVAKLRK 370 Query: 441 L 441 L Sbjct: 371 L 371 >gi|327400250|ref|YP_004341089.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6] gi|327315758|gb|AEA46374.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6] Length = 319 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 21/311 (6%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT-VKFDIETWAHKLNAVMLPT 200 A E+ R +G E V I YI + +K + + +L Sbjct: 16 AECYGYDEFIIRRWFGIFGDEAVELIEAMEKGVPKYIRVNTLKIEEKELIRRLEKRKFVV 75 Query: 201 GGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + SI + P + G ++V D ++ IP + V+D A+PGG Sbjct: 76 EQTEVPFCYKVVGEPYSIGATPEYLMGYYYVMDKASCIPPLALSPSSRDVVVDFAASPGG 135 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT L + + + A++ + R++ L N+ R+ + +++M+A + D + Sbjct: 136 KTTFLAQLMGNRGVLLAIEANPDRIQPLIDNIHRMGVLNAAVVQMNAAKFHKIGIKPDKI 195 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS G I + P +R +DI+ + QR L+ I +K GG +V+S CSL Sbjct: 196 LLDAPCSGEGIIHKDPSRKTSRGEEDILFCSGLQRDLIDSAIRSLKSGGALVYSTCSLTP 255 Query: 371 QDSEEVVQKVLRSSPIPVE-LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++E V+Q L + P+ +E + + A K D+ + + R P Sbjct: 256 EENEMVIQWALDNHPVRLEKIEWGDPALTKVGDIRFSNEMKKARRFYPH--------RHE 307 Query: 430 MDGFFAVALRR 440 GFF L + Sbjct: 308 CSGFFVAKLVK 318 >gi|50546513|ref|XP_500726.1| YALI0B10560p [Yarrowia lipolytica] gi|49646592|emb|CAG82971.1| YALI0B10560p [Yarrowia lipolytica] Length = 609 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L N + + +A P + + A L + Sbjct: 221 CSYYGYNEYLAEKLFNLFTPSEAIEFFEANEVPRPVTIRANTLKTRRRDLAQSLVNRGVN 280 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV VLD+ A+ Sbjct: 281 LQPIGKWTKVGLQIFDSAVPIGATPEYLCGHYILQAASSFLPVMAMDPQEGERVLDMAAS 340 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A DVSK R++ L N+ RL + DA ++ F Sbjct: 341 PGGKTTYISALMKNTGMVFANDVSKPRIKSLIANIHRLGCKNTVVCNYDAREFPKVIGGF 400 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D +L+DAPCS TG I + V R D ++ Q++LLL I V GG++V+ Sbjct: 401 DRILLDAPCSGTGVISKDQAVKTNRSEKDFIQLPHLQKQLLLSAIDSVDANSATGGVIVY 460 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E VV LR P V LV K + +P + Sbjct: 461 STCSVMVEENEAVVDYALRKRPN-VRLVETGLEIGK-----EGFTSFRGKTFSPKLKLTR 514 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 515 RYYPHTYNVDGFYVAKFQKIA 535 >gi|212541847|ref|XP_002151078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium marneffei ATCC 18224] gi|210065985|gb|EEA20078.1| nucleolar RNA methyltransferase (Nop2), putative [Penicillium marneffei ATCC 18224] Length = 764 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 150/369 (40%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D V + A + + A + +L + + Sbjct: 249 QLLRTRITDTLRV--LGDLATLGQPGKSRADYMQLLLDDICTY-----------YGYTPY 295 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L + + A +A P + + ++ + T A L + + Sbjct: 296 LAEKLMSLFTPMEAFAFFEANEIPRPVVIRTNTLRTNRRTLAQALINRGVVLQPVGKWSK 355 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N VLD+ +APGGKT + Sbjct: 356 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASAPGGKTTYIS 415 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL + + + PK FD VL+DAP Sbjct: 416 ALMRNTGIVVANDASKVRTKGLIGNIHRLGCKNTIVCNYNGQEAFPKILGGFDRVLLDAP 475 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 C+ TG I + P V + D + QR+LLL I K GG +V+S CS+ + Sbjct: 476 CTGTGVISKDPSVKTNKTERDFLAIPHMQRQLLLAAIDSTDHHSKTGGYIVYSTCSVTVE 535 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E+VVQ VLR P V++V + S + + ++T + + +D Sbjct: 536 ENEQVVQYVLRKRPN-VKIVDTGLGSFGSEGFTSYMGKKFDEKMT--LTRRYFPHRENVD 592 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 593 GFFVCKLKK 601 >gi|124027641|ref|YP_001012961.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus butylicus DSM 5456] gi|123978335|gb|ABM80616.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus butylicus DSM 5456] Length = 424 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 77/444 (17%), Positives = 160/444 (36%), Gaps = 35/444 (7%) Query: 9 LVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 V++ +L+ +R+R SL + + + + +VR + R +D VL Sbjct: 6 EVAARILAETVRRRASLRDVAVGFFSRNPELDYM----KPIVRVLTLGVARHYLLLDRVL 61 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + + RV V + L + + A++ + + Sbjct: 62 VSLGYGPPSHSQRWMLA--RVLVYEALSGKLKPTRA----RKLAEKAGLDPDKLLELRGA 115 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKFDI 186 R + + L R++ + P W E L + + P+ +I + D Sbjct: 116 DPREFVKGLSGLDRLSVLYSFPRWMLEELLEARIPDLPKLLEVLNSDPVRWIRIRPGVDR 175 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI-------VSLPGFAEGVWWVQDASASIPVQLFGT 239 + A +L + + I + EG++ +QD ++++ + Sbjct: 176 KWLAERLQEQGVVIEPDKDLPDVARIVKGASEATRTREYQEGLYTIQDKASTLVGWVASP 235 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 D A K + + GA+ V A DV +RL++ + L RL L + + Sbjct: 236 RGR-VAADPTAGAAIKASHMAWLGARYVVAGDVKPQRLQEAKRTLSRLGLGHIVDLAVGD 294 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + D V+VD PC+ G ++ P+V D+ Q ++L + G Sbjct: 295 ARMPYWRKLDVVIVDPPCTDIGRLQYEPEVKLWLTRGDLHYYRRLQLRILASVAKSLPRG 354 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 +V+S C+L + ++ V++++L + P + P + + A R+ P Sbjct: 355 ATIVYSVCTLTRSETVWVLRRLLETHPDVEIVEPEPVLGERPQGLPKAQ------RMLPH 408 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + GFF L ++ Sbjct: 409 L--------HKTQGFFIAKLAKIA 424 >gi|327301379|ref|XP_003235382.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892] gi|326462734|gb|EGD88187.1| nucleolar protein NOP2 [Trichophyton rubrum CBS 118892] Length = 690 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + + + A + +L + + Sbjct: 238 QLLRTRITDTIRI--LGDLTTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + + +A SP I + ++ + + A L + + Sbjct: 285 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + A D SK R + L N+ RL + MDA PK + FD VL+DAP Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 464 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 524 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + ++ + + P + + +D Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSFMNKKFDDK-MP-LTRRYYPHRENVD 581 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 582 GFFVCKLKK 590 >gi|325108338|ref|YP_004269406.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305] gi|324968606|gb|ADY59384.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305] Length = 495 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 107/475 (22%), Positives = 183/475 (38%), Gaps = 60/475 (12%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGD----SAFRLLSQRDQILVRAIVNVTLRFLPR 62 +R + LL ++ + L L D + ++ ++ Sbjct: 24 SRQWTYRLLEGWRTEQQLIRDQLQLFRQDQITSDTHQGAGWAERAII---------RQRT 74 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 ID VL + + + L LLR+ A++L+ A YA + VE A R + + Sbjct: 75 IDRVLREAVSRARENVQNELWTLLRMGAAELLFGPRDAQYAAISETVELA-RWVGHSEWT 133 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEW------------------------------ 151 +N +LR V R E G P Sbjct: 134 GFLNGVLRGVQRMLSEEESDTVGKDCFPVADNIYRKLNKPIFPDPETQTVDYIGLAFSLP 193 Query: 152 --FKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRLK 206 + + Y + + + + +SP + L + D + W + A + G Sbjct: 194 GTLAKAWASRYSHDELWPVVWSTLSPPPLGLRINRVATDPQEWLARCEAAGVEIGTTEFP 253 Query: 207 ELPE-----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-- 259 E + + +PGF EG VQD +A V+L VLDLCA PG KT Q+ Sbjct: 254 EAFQLLSKTRLHDIPGFTEGEVVVQDLTAMHAVRLLNPYPKDDVLDLCAGPGTKTTQMAE 313 Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCS 317 ++ +TA DV++ RL+++ N +RL + ++ FDAVL D PCS Sbjct: 314 LMLDQGSITATDVTQARLDQISENAERLSFSCIHPMWIERTKPEIDNGPFDAVLADVPCS 373 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 +TG + + P+ W +DIV+ QR+LL S V+ G +V+S CS++ ++E+ + Sbjct: 374 NTGVLGKRPEARWRYSPEDIVELNKLQRRLLDVAASQVEEDGRIVYSTCSIEPAENEQFI 433 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 + LR+ P E V + + + + E + + DG Sbjct: 434 VEWLRAHP-EFECVEMKTVLPSPEHDGGFCARLEYRETDEADGENAEADETAGDG 487 >gi|302501985|ref|XP_003012984.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371] gi|291176545|gb|EFE32344.1| hypothetical protein ARB_00867 [Arthroderma benhamiae CBS 112371] Length = 689 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + + + + A + +L + + Sbjct: 237 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 283 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + + +A SP I + ++ + + A L + + Sbjct: 284 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 343 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT Sbjct: 344 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 403 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + A D SK R + L N+ RL + MDA PK + FD VL+DAP Sbjct: 404 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNMDARTAFPKAIGGFDRVLLDAP 463 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 464 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 523 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + ++ + + P + + +D Sbjct: 524 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMNKKFDEK-MP-LTRRYYPHRENVD 580 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 581 GFFVCKLKK 589 >gi|24373769|ref|NP_717812.1| sun protein, putative [Shewanella oneidensis MR-1] gi|24348152|gb|AAN55256.1|AE015663_6 sun protein, putative [Shewanella oneidensis MR-1] Length = 404 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 81/447 (18%), Positives = 139/447 (31%), Gaps = 70/447 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++L+ V+ + L + L +Q + + LR L Sbjct: 12 ELVINILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARITTVTGDILRRLNLYCF--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + +LL V + + +E K + + + Sbjct: 66 -LADIKPEEMERLGSKLLNV------------WHLFHE-LELPKMQYSLPVDPDDLVARI 111 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + PEW G A P L V Sbjct: 112 EQAKTNPVLWDGC-------PEWLDTMGREQLGASW-EKERAALNRPPKRFLRVNGLKVS 163 Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + KL + T + + ++ F EG++ QDA + Sbjct: 164 RDELVQKLATEFVSTQVVDSVDSALEVTSDSALFRTNSFKEGLFEQQDAGSQRVAAALDA 223 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V+D CA GGKT + ++ A+DV + +L+ L+ R + + Sbjct: 224 KPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRLI 283 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D VL+D PCS G ++R+PD W D + Q+ +L Sbjct: 284 VGSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDAKWRDTADRLPVLMELQKHILSSYSRM 343 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GGIVV++ CS+ ++ V L +P L Sbjct: 344 VKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED---------------------- 381 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I +G DGF+ L R+ Sbjct: 382 ------ETISPADTGFDGFYLAKLERI 402 >gi|302385720|ref|YP_003821542.1| RNA methylase, NOL1/NOP2/sun family [Clostridium saccharolyticum WM1] gi|302196348|gb|ADL03919.1| RNA methylase, NOL1/NOP2/sun family [Clostridium saccharolyticum WM1] Length = 466 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 22/308 (7%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLY-IDLT-VKFDIETWAHKLN---AVMLPTG 201 +P+ F+E+++ +E + + + + +K E + + Sbjct: 3 QLPDGFREKMKGLLEEEYDSFMESYHKERVQGLRINPLKISRENFMEICPFQLKKIPWAE 62 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 E P G++++Q+ SA V+L +LDLCAAPGGKT + Sbjct: 63 EGYYYPADERPGKHPYHEAGLYYIQEPSAMAVVELLDPRPGERILDLCAAPGGKTTHIAG 122 Query: 262 S---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPC 316 + + ++ R L N++RL + + D+ + FD ++VDAPC Sbjct: 123 RLKGNGFLLSNEIHPARARILSQNVERLGIGNCVVSNEDSQSLSRRFPSFFDRIVVDAPC 182 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G R+ + A Q ++L +KPGG +V+S C+ +++E+V Sbjct: 183 SGEGMFRKDETARQEWTPGHVTVCAARQEEILSNAAVMLKPGGTMVYSTCTFSPEENEQV 242 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDG 432 ++ L S P + + G + RI PD E G Sbjct: 243 IEAFLFSHPDFSIKDEGKRPGLSPGRPEWSRTGLGDLKKTFRIWPDRSEGE--------G 294 Query: 433 FFAVALRR 440 F L++ Sbjct: 295 HFLAVLKK 302 >gi|303273764|ref|XP_003056234.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462318|gb|EEH59610.1| predicted protein [Micromonas pusilla CCMP1545] Length = 353 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 119/319 (37%), Gaps = 30/319 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLP 199 A + + + + +A + + L A L + Sbjct: 43 ATYYGYNTFLTRYFIETFSVAETMELLEANETQRPVTLRTNTLKCRRRELAAALINRGVN 102 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +P + VLD+ AA Sbjct: 103 LDPIGKWSKVGLLVYDSRVPIGATPEYMAGHYMLQSASSFLPCMALAPQDGERVLDMAAA 162 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLF 307 PGGKT + + + ++ A + K+RL L NL R+ + D Sbjct: 163 PGGKTTYVAALMRNTGQIFANEFQKKRLSSLVANLQRMGCTNAVVCNYDGRQLPKVLGRV 222 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V ++ DI K A Q++LL+ + K GG VV+ Sbjct: 223 DRVLLDAPCSGTGVIAKDSSVKVSKSEADIAKCAHLQKELLVAAVDCCDATSKTGGYVVY 282 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 S CS+ +++E VV +L+ + + L A+ S R P + Sbjct: 283 STCSVTVEENEAVVDYLLKKRDVKLVSTGLEFGREAFASYRGKNFHPSVTKARRFYPHV- 341 Query: 421 EKIDGVSSGMDGFFAVALR 439 MDGFF ++ Sbjct: 342 -------HNMDGFFVAKIK 353 >gi|89054474|ref|YP_509925.1| Fmu (Sun) [Jannaschia sp. CCS1] gi|88864023|gb|ABD54900.1| Fmu (Sun) [Jannaschia sp. CCS1] Length = 387 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 126/389 (32%), Gaps = 31/389 (7%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M+ AR + +L +++ L + + +D+ VR V LR Sbjct: 1 MQP--AARYAAAIEVLDAWCD-GLAVEQALTRWARGARYAG--SKDRAAVRDHVYDVLRQ 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +A L L + LLR+ D V V A R Sbjct: 56 KGSCEA-LGNGTGRGL------ILGLLRI--------QGRDAEAVFSGVGHAPDPLSERE 100 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + S+ I S +P+ L + + + Sbjct: 101 KSSPQTSLD---PPMNIPDWTLPHLRSRVPDALPVLLSSLTHRA---PLWLRVNLSRTTR 154 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 V + + A + + + P + + G+ QD S +Q Sbjct: 155 AAVADALADDGIETRAHEAVPTALEVTDGPRKLRQSAAYLSGLVEPQDLSVQWAMQRVDW 214 Query: 240 LNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 + +LD CA GGK A +GA + A D +R+ L R + D Sbjct: 215 PADGRILDYCAGGGGKALAIADRTGADLFAHDALPQRMADLGPRAGRAGAKITTLESDDF 274 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 P FD VL D PCS +GT RR P+ W + + Q +L V PG Sbjct: 275 GQEDP---FDLVLTDVPCSGSGTWRRDPEAKWRLTSQGLEDLVKTQSAILDAAADLVLPG 331 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 G +V+ CSL + ++E + L P Sbjct: 332 GRLVYMTCSLFEVENEAQITAFLARHPDW 360 >gi|240277116|gb|EER40626.1| nucleolar protein NOP2 [Ajellomyces capsulatus H143] gi|325096756|gb|EGC50066.1| nucleolar protein NOP2 [Ajellomyces capsulatus H88] Length = 670 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 151/369 (40%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L +A+ + + K + A N +L + + Sbjct: 221 QLLRTRIAETTRI--LGDLPSLGKPTKSRADYTNLLLSDICTY-----------YGYTPF 267 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L + A +A SP + + ++ + + A L + + Sbjct: 268 LAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 327 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N VLD+ AAPGGKT + Sbjct: 328 VGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 387 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL I +DA PK FD VL+DAP Sbjct: 388 ALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILGGFDRVLLDAP 447 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVVFSNCSLDKQ 371 CS TG I + P++ ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 448 CSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVYSTCSVTVE 507 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR+ P V++V + + + + ++ + + +D Sbjct: 508 ENEAVVQYALRNRPN-VKIVDTGLGNFGTPGFKSYMGKKFDDKM--SLSRRYFPHRENVD 564 Query: 432 GFFAVALRR 440 GF+ L++ Sbjct: 565 GFYVCKLKK 573 >gi|170739290|ref|YP_001767945.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46] gi|168193564|gb|ACA15511.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46] Length = 437 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 100/461 (21%), Positives = 158/461 (34%), Gaps = 61/461 (13%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L+ + +R L F D+ + +V LR Sbjct: 1 MTPS--ARLSAAIEVLADIAARRRPAADALKDWGLAHRFAG--SGDRAAIAGLVYDALRR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRV--SVAQILYLDVADYAVVDLAVEQAKRDKEN 117 ++D L LR+ +A A Sbjct: 57 RASAAWIMDDDAPR------AVLIGSLRLQRGLA---------------GATIAGLCSGE 95 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 R + R + +PEW L G + +L A Sbjct: 96 RFAPAPLTEAERARLDTATLADAPLHVAGDVPEWVLPSLVAALGDD-LLPELKALARRAP 154 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSL---------PGFAEGVWWV 225 +D+ V D + A L + L + P F EG++ + Sbjct: 155 LDIRVNTLKADRDRVAAALAHLNPAPTPHAPDGLRIPVPDDGRGPALHVEPEFLEGLFEI 214 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCN 282 QD + + +L G +V+DLCA GGKT A LI + ++ A D RRL + Sbjct: 215 QDEGSQLAARLTGARPGETVIDLCAGGGGKTLALAALIANRGRLVATDGDPRRLAPIHER 274 Query: 283 LDRLHLYAEDIIE-----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L R AE D VLVDAPC+ +GT RR+PD W + Sbjct: 275 LRRAGAVAEVRTPRGGRGAPDALADLAGAADLVLVDAPCTGSGTWRRNPDAKWRLRPGSL 334 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +L + ++PGG +V+ CSL ++++ V +L L + A Sbjct: 335 AARRAEQEAVLDRAAGLIRPGGRIVYVTCSLLPEENDGAVAGLLARRS---SLRAVPLAL 391 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 ++ A+ + G I++TP +G DGF+ L Sbjct: 392 APDLEPALRRTAHG-IQMTP--------ARTGTDGFYVALL 423 >gi|225011697|ref|ZP_03702135.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A] gi|225004200|gb|EEG42172.1| Fmu (Sun) domain protein [Flavobacteria bacterium MS024-2A] Length = 403 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 78/451 (17%), Positives = 146/451 (32%), Gaps = 68/451 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L L + +I L L + RD+ L+ ++ +R+ Sbjct: 1 MKLHRNIALGVVEGLQNIFTNKIPLRVELQRLLKLNRKWG--SRDRRLLGEVLLDCIRWK 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 A L + L L + ++ + +E Sbjct: 59 TTY-AFLGNFDDKTKHFNWKLLGVWLLLKEYEL------------------PKWEELIDL 99 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 KL N++ + + IP+W + + +G+ + L Sbjct: 100 KKLQNTLPLEPKKTTRVI------RHSIPDWLDKVGMDAFGEVIWEKELSKQNEGGPLVL 153 Query: 181 TVKF---DIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASA 230 V E L + + E + L + +G++ +QDA++ Sbjct: 154 RVNTLKTTPEKLQKLLEKKFGILSNLNESYPEALILEKHSKLTHLEPYQKGLFEIQDANS 213 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + ++D CA GGKT + + + + A+D ++LE+L R Sbjct: 214 QLVSHWVNPKPGMKIIDACAGAGGKTLHMAALMENKGNIIAIDNYPKKLEQLIKRAHRNR 273 Query: 288 LYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + D VL+DAPCS G +RR+P W + + + Q Sbjct: 274 INIIQTNDASEITVFESNLEKADVVLIDAPCSGLGILRRNPAAKWHMTPERMEELQKLQL 333 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L + VK GG ++++ CS+ ++ +Q L + Sbjct: 334 QILKKNAPLVKKGGRLIYATCSIFPSENSLQIQSFLNT---------------------- 371 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 E R E +G DGFF Sbjct: 372 ----ESGKRFNLKKEETFLAYKTGFDGFFIA 398 >gi|291617715|ref|YP_003520457.1| YebU [Pantoea ananatis LMG 20103] gi|291152745|gb|ADD77329.1| YebU [Pantoea ananatis LMG 20103] Length = 488 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 20/268 (7%) Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + +L V G + E + S+ G++++Q+AS+ +PV Sbjct: 68 TQTAHYGWQLTPVPWCAEGFWINREDESLPLGSVAEHLSGLFYIQEASSMLPVTALFEAQ 127 Query: 242 N--LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +SV+D+ AAPG KT Q + + + A + S R++ L N+ R + + Sbjct: 128 PDAMSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLHANITRCGVTNSALTHF 187 Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 DA + P FDA+L+DAPCS G +R+ D L A QR L+ Sbjct: 188 DARVFGPALPEQFDAILLDAPCSGEGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHA 247 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +KPGG +V+S C+L++ ++++VV +L P VE+ PLN + A +PEG++ Sbjct: 248 LKPGGTLVYSTCTLNQIENQQVVAWLLARYPDAVEIAPLNGLF---AGAERAATPEGYLH 304 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + + GFF LR+ Sbjct: 305 VFPHLFDSE--------GFFVACLRKTA 324 >gi|330915499|ref|XP_003297055.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1] gi|311330482|gb|EFQ94850.1| hypothetical protein PTT_07336 [Pyrenophora teres f. teres 0-1] Length = 745 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 146/363 (40%), Gaps = 24/363 (6%) Query: 92 QILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI-SIIP 149 Q+L V+D A+ R A+ + S+L+ V + ++ P Sbjct: 227 QLLRTRLTDTIRVLDDFKNLAEE---GRSRAEYMASLLKDVCAYYGYSEFLADKLLNLFP 283 Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI-RLKEL 208 + R + I + + + +L V + ++ + Sbjct: 284 PREAQAFFEANETPRPIVIRT--NTLRTHRRELAQTLINRGVQLEPVGKWSKVGLQIFDT 341 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265 + + P + G + +Q AS+ +PV N VLD+ AAPGGKT L + + Sbjct: 342 QVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGC 401 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRR 324 + A D +K R + L N+ RL + A ++ FD VL+DAPCS TG I + Sbjct: 402 IFANDANKDRAKGLIGNIHRLGARNVIVSHYSALEFPRVMGGFDRVLLDAPCSGTGVIAK 461 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKV 380 V + D +K Q++LLL I V K GG +V+S CS+ +++E+VVQ Sbjct: 462 DASVKTNKTEADFMKLPHLQKQLLLAAIDSVNHSSKTGGYIVYSTCSVTLEENEQVVQYA 521 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVAL 438 L P V+LV + K + P M + + +DGFF Sbjct: 522 LNKRPN-VKLVETGLTFGK-----EGFTKIQGKIFHPSMKMTRRYYPHTYNVDGFFVAKF 575 Query: 439 RRL 441 +++ Sbjct: 576 KKI 578 >gi|189190438|ref|XP_001931558.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973164|gb|EDU40663.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 739 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 146/363 (40%), Gaps = 24/363 (6%) Query: 92 QILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI-SIIP 149 Q+L V+D A+ R A+ + S+L+ V + ++ P Sbjct: 227 QLLRTRLTDTIRVLDDFKNLAEE---GRSRAEYMASLLKDVCAYYGYSEFLADKLLNLFP 283 Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI-RLKEL 208 + R + I + + + +L V + ++ + Sbjct: 284 PREAQAFFEANETPRPIVIRT--NTLRTHRRELAQTLINRGVQLEPVGKWSKVGLQIFDT 341 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265 + + P + G + +Q AS+ +PV N VLD+ AAPGGKT L + + Sbjct: 342 QVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMAAAPGGKTTHLAALMKNTGC 401 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRR 324 + A D +K R + L N+ RL + A ++ FD VL+DAPCS TG I + Sbjct: 402 IFANDANKDRAKGLIGNIHRLGARNVIVSHYSALEFPRVMGGFDRVLLDAPCSGTGVIAK 461 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKV 380 V + D +K Q++LLL I V K GG +V+S CS+ +++E+VVQ Sbjct: 462 DASVKTNKTEADFMKLPHLQKQLLLAAIDSVNHSSKTGGYIVYSTCSVTLEENEQVVQYA 521 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVAL 438 L P V+LV + K + P M + + +DGFF Sbjct: 522 LNKRPN-VKLVETGLTFGK-----EGFTKIQGKIFHPSMKMTRRYYPHTYNVDGFFVAKF 575 Query: 439 RRL 441 +++ Sbjct: 576 KKI 578 >gi|114562965|ref|YP_750478.1| Fmu (Sun) domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334258|gb|ABI71640.1| Fmu (Sun) domain protein [Shewanella frigidimarina NCIMB 400] Length = 404 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 73/448 (16%), Positives = 148/448 (33%), Gaps = 68/448 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++L+ V+ + L + L+ +Q + + LR L ++D Sbjct: 12 ELVLNVLTMVLTRGKPLDRAYSEHFS---GLTLNPSEQARITQVTGDILRRLNLYCFLVD 68 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +LL + V ++ K + + L Sbjct: 69 I----KPEEFDRLGSKLL-------------NGWHVFHGLDLPKMQYSLQLEQAAFEANL 111 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLT-VKFDI 186 + + + PEW E + G + + A Y+ + +K + Sbjct: 112 EQAKTDPVLWDGC-------PEWLNELGQVQLGDKWPAERAALAEQPKRYLRVNELKCNR 164 Query: 187 ETWAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + +L + ++ F +G + QDA + + Sbjct: 165 DALIERLKKEGVTAIEVSDVASAIEVTSDSALFRTDAFKDGWFEQQDAGSQLVANAVDAK 224 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + V+D CA GGKT + ++ A+D+ + +L+ L+ R + II Sbjct: 225 PGMRVVDACAGAGGKTLHIAAQMQGKGRLLAMDIEQWKLDNLKTRAKRAGAHNVETRIIA 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 K D VL+D PCS G ++R+PD W + + Q+ +L V Sbjct: 285 SSKTIKRLKLTADRVLLDVPCSGLGVLKRNPDSKWRDTPERLPVLVELQKHILQSYSRMV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GGI++++ CS+ +++ + + L +P + N + Sbjct: 345 KVGGILIYATCSIMPEENRDQIDAFLADNPQFTLIEDENILVSER--------------- 389 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G DGF+ + R+ + Sbjct: 390 -------------GFDGFYLAKMERIAE 404 >gi|242066150|ref|XP_002454364.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor] gi|241934195|gb|EES07340.1| hypothetical protein SORBIDRAFT_04g029465 [Sorghum bicolor] Length = 640 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 26/318 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E L + ++ + +A L A L Sbjct: 172 YYGYNDFLVEALIEMFPAVELVELLEAFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 231 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 232 PIGKWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 291 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + + D + Sbjct: 292 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVSNYDGKELPKVLGMNSV 351 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TGTI + + ++D +DI A Q++LLL I V K GG +V+ Sbjct: 352 DRVLLDAPCTGTGTIWKDLQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDANSKTGGYIVY 411 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS+ ++E V+ L+ V+LVP + + E + + + Sbjct: 412 STCSIMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRYREHRFHTSLEKTRRF 466 Query: 424 DGVSSGMDGFFAVALRRL 441 + MDGFF L++L Sbjct: 467 YPHVNNMDGFFVAKLKKL 484 >gi|71408722|ref|XP_806747.1| nucleolar protein [Trypanosoma cruzi strain CL Brener] gi|70870582|gb|EAN84896.1| nucleolar protein, putative [Trypanosoma cruzi] Length = 538 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 119/311 (38%), Gaps = 20/311 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGG 202 E+ + + + + +A P + V L + Sbjct: 162 YEYNEFLTDAVLLLFPPAEAVEFFEAMEKPRPTTIRVNTLKAKRRDLVQALLKRGMHVEP 221 Query: 203 IRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + I + G + +Q A + +PV VLD+ AAPGG Sbjct: 222 LEKWSKVGLQVFESNVPIAGTIEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGG 281 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310 KT + + + + A DVS+ R + L NL RL + + D Y FD V Sbjct: 282 KTTYIAQLMKNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKNFDRV 341 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPC+ +G I R + ++ +D+ +++ QR LLL I VK GG VV+S CS Sbjct: 342 LLDAPCTGSGIISRDKSIKSSKHYEDVQRASQQQRTLLLSAIDAVKVGGYVVYSTCSFLV 401 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 +++E VV+ +R + + + L E + M Sbjct: 402 EENEAVVEFAVRRRHVEIVEMGLPFGRPGLTKYRHHRFQEKM-----QCSRRFFPHVHNM 456 Query: 431 DGFFAVALRRL 441 DGFF L++L Sbjct: 457 DGFFVCKLKKL 467 >gi|320581196|gb|EFW95417.1| RNA m(5)C methyltransferase, putative [Pichia angusta DL-1] Length = 608 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + E+L N + + +A + + A L + Sbjct: 223 CEYFGYTPFLAEKLFNLFSPSEAIEFFEANEIHRPVTIRTNTLVTRRRELAQTLVNKGVN 282 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 283 LQPIGPWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERILDMAAA 342 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 343 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCTNTVVCNYDAREFPKVIGGF 402 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + +V R D ++ Q++LLL I V GG++V+ Sbjct: 403 DRVLLDAPCSGTGVIAKDQNVKVNRTEKDFIQIPHLQKQLLLSAIDSVDAHSATGGVIVY 462 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E VV LR P V+LV A K + + P + Sbjct: 463 STCSVAVEENEAVVDYALRKRPN-VKLVETGLAIGKP-----GFTSYRGKQFNPKVSLTR 516 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGFF +++ Sbjct: 517 RYYPHAYNVDGFFVAKFQKVA 537 >gi|154277144|ref|XP_001539413.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1] gi|150412998|gb|EDN08381.1| nucleolar protein NOP2 [Ajellomyces capsulatus NAm1] Length = 1980 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 152/369 (41%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L +A+ + + K ++ A N +L + + Sbjct: 1583 QLLRTRIAETTRI--LGDLPSLGKPSKSRADYTNLLLSDICNY-----------YGYTPF 1629 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L + A +A SP + + ++ + + A L + + Sbjct: 1630 LAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 1689 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N VLD+ AAPGGKT + Sbjct: 1690 VGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 1749 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL I +DA PK FD VL+DAP Sbjct: 1750 ALMRNTGCVIANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILGGFDRVLLDAP 1809 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVVFSNCSLDKQ 371 CS TG I + P++ ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 1810 CSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIVYSTCSVTVE 1869 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR+ P V++V + + + + ++ + + +D Sbjct: 1870 ENEAVVQYALRNRPN-VKIVDTGLGNFGTPGFKSYMGKKFDDKM--SLSRRYFPHRENVD 1926 Query: 432 GFFAVALRR 440 GF+ L++ Sbjct: 1927 GFYVCKLKK 1935 >gi|152999908|ref|YP_001365589.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS185] gi|151364526|gb|ABS07526.1| Fmu (Sun) domain protein [Shewanella baltica OS185] Length = 453 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 152/449 (33%), Gaps = 50/449 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 32 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQAS 89 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 ++ S LL Q + + E ++ + + L L Sbjct: 90 -AVYFASLSASALLEAHAWQ---------EIANAWHELSQSPIDYQQAQALTVESLDDKL 139 Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188 L + +P+WF + ++ L + + P++ D T Sbjct: 140 ALIQYLFPATECKAQDLLPDWFWQVCPVDAAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 199 Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L L ++ + + +G +QD ++ + Q+ + Sbjct: 200 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDDH 259 Query: 245 VLDLCAAPGGKTAQLIVSG------------AKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D C+ GGKT QL + + D+ LE+L R H Sbjct: 260 WWDACSGAGGKTLQLHSLMLAKAADNQTSSAGSIISSDIRSNALEELTKRAQRAHFNGIS 319 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 320 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 379 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK GGI+V++ CSL ++++VV L+ P L P+ + Sbjct: 380 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 430 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 431 MLTVWP--------FEANSDGMFVARMLR 451 >gi|121719340|ref|XP_001276369.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus clavatus NRRL 1] gi|119404567|gb|EAW14943.1| nucleolar RNA methyltransferase (Nop2), putative [Aspergillus clavatus NRRL 1] Length = 755 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 137/318 (43%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 273 CTYYGYTPFLAEKLFNLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 332 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 333 LEPVGKWSKVGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 392 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGKT + + + V A D SK R + L N+ RL + +DA PK Sbjct: 393 PGGKTTYISALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGG 452 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V +++ D + QR LLL I V K GG VV Sbjct: 453 FDRVLLDAPCTGTGVISKDPSVKTSKNERDFLAIPHMQRNLLLAAIDSVDHTSKTGGYVV 512 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VLR P V+LV + + + + ++T + + Sbjct: 513 YSTCSVTVEENEAVVQYVLRKRPN-VKLVDTGLGDFGTPGFTAYMGKKFDPKMT--LTRR 569 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGFF ++ Sbjct: 570 YFPHRENVDGFFVSKFKK 587 >gi|45735882|dbj|BAD12915.1| putative proliferating cell nuclear protein P120 [Oryza sativa Japonica Group] gi|45736012|dbj|BAD13040.1| putative proliferating cell nuclear protein P120 [Oryza sativa Japonica Group] Length = 682 Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 124/318 (38%), Gaps = 26/318 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E + ++ + ++ L A L Sbjct: 229 YYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 288 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 289 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 348 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + + D + Sbjct: 349 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 408 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TGTI + P + ++ +DI A Q++LLL I V K GG +V+ Sbjct: 409 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVY 468 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CSL ++E VV L+ V+LVP + + E + D + Sbjct: 469 STCSLMIPENEAVVDYALKKR--NVKLVPCGLDFGRP---GFIRFREHRFHTSLDKTRRF 523 Query: 424 DGVSSGMDGFFAVALRRL 441 + MDGFF L++L Sbjct: 524 YPHVNNMDGFFVAKLKKL 541 >gi|296817387|ref|XP_002849030.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480] gi|238839483|gb|EEQ29145.1| nucleolar protein NOP2 [Arthroderma otae CBS 113480] Length = 683 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + + + + A + +L + + Sbjct: 241 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 287 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + + +A SP I + ++ + + A L + + Sbjct: 288 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 347 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT Sbjct: 348 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 407 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + A D SK R + L N+ RL + +DA PK + FD VL+DAP Sbjct: 408 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNLDARTAFPKAVGGFDRVLLDAP 467 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 468 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 527 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + ++ + + P + + +D Sbjct: 528 ENEGVVQYALRKRPN-VKIVDTGLGSFGTPGFKSYMNKKFDDK-MP-LTRRYYPHRENVD 584 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 585 GFFVCKLKK 593 >gi|310767840|gb|ADP12790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia sp. Ejp617] Length = 472 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 E + L + G + + S G++++Q+AS+ +PV Sbjct: 53 EPYQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGHM 112 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q+ + A + S R++ L NL R + + D Sbjct: 113 PQRVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDG 172 Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + P + FDAVL+DAPCS G +R+ D L + A QR L+ ++ Sbjct: 173 RVFGPALPECFDAVLLDAPCSGEGVVRKDADALRNWSETSTAEIAATQRDLINSAFHALR 232 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+ ++++V++ +L P VE+ PL++ + + ++A + EG++ + Sbjct: 233 PGGTLVYSTCTLNLSENQQVIRWLLEQYPDAVEIEPLDTLFNGAKEVA---TAEGFLHVF 289 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF LR++ Sbjct: 290 PHIFDSE--------GFFVARLRKVA 307 >gi|255955391|ref|XP_002568448.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255] gi|211590159|emb|CAP96330.1| Pc21g14330 [Penicillium chrysogenum Wisconsin 54-1255] Length = 733 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 142/320 (44%), Gaps = 23/320 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A +P + + ++ + + A L + Sbjct: 251 CTYYGYTRFLAEKLFNLFTPREAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVV 310 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + ++ E P + + P + G + +Q AS+ +PV N VLD+ +A Sbjct: 311 LEPVGKWSKVGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMASA 370 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGKT + + + V A D SK R + L N+ RL + MDA PK + Sbjct: 371 PGGKTTYMSALMRNTGCVVANDASKPRAKGLIGNIHRLGCKNTIVTNMDARTAFPKAMGG 430 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPC+ TG I + P V +++ D + QR+LLL I V K GG +V Sbjct: 431 FDRVLLDAPCTGTGVISKDPGVKTSKNERDFLAIPHMQRQLLLAAIDSVDHASKTGGYIV 490 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ VLR P V++V + S + ++ + + Sbjct: 491 YSTCSVTVEENEAVVQYVLRKRPN-VKIVDTGLGGFGSPGFLSYMGKTFDPKM--ALTRR 547 Query: 423 IDGVSSGMDGFFAVALRRLI 442 +DGF+ L++ Sbjct: 548 YFPHRENVDGFYVCKLKKTA 567 >gi|258571405|ref|XP_002544506.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704] gi|237904776|gb|EEP79177.1| nucleolar protein NOP2 [Uncinocarpus reesii 1704] Length = 1027 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 40/371 (10%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + A + + + + +L+ + + Sbjct: 188 QLLRTRITDTIRI--LGDLATLGQPRKSRSDYTDLLLQDICTY-----------YSYTPY 234 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + A +A +P + + ++ + + A L + + Sbjct: 235 LAEKLYSLFTPMEAFAFFEANETPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 294 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT + Sbjct: 295 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYMS 354 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D +K R + L N+ RL + +DA PK FD VL+DAP Sbjct: 355 ALMRNTGCVMANDANKERAKGLIGNIHRLGCKNTIVTNLDARTAFPKALGGFDRVLLDAP 414 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 415 CSGTGVISKDPSVKTSKTERDFMAIPHTQKQLLLAAIDSTNHASKTGGYIVYSTCSVAVE 474 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSG 429 ++E VVQ VLR P V +V + S + P M + Sbjct: 475 ENEAVVQYVLRKRPN-VRIVDTGLGTFGSEGFKSYKGK----QFDPKMALTRRYFPHREN 529 Query: 430 MDGFFAVALRR 440 +DGF+ L++ Sbjct: 530 VDGFYVCKLKK 540 >gi|302652446|ref|XP_003018073.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517] gi|291181678|gb|EFE37428.1| hypothetical protein TRV_07909 [Trichophyton verrucosum HKI 0517] Length = 690 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + D + + + + + A + +L + + Sbjct: 238 QLLRTRITDTIRI--LGDLSTLGQPGKSRADYTDLLLNDICVY-----------YGYTPY 284 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGI----- 203 E+L + + + +A SP I + ++ + + A L + + Sbjct: 285 LAEKLFSLFTPMEAFSFFEANESPRPIVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 344 Query: 204 ---RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 ++ E P + + P + G + +Q AS+ +PV + +LD+ AAPGGKT Sbjct: 345 VGLQVFESPVPLGATPEYLAGHYILQAASSFLPVMALAPQPHERILDMAAAPGGKTTYAS 404 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + A D SK R + L N+ RL + +DA PK + FD VL+DAP Sbjct: 405 ALMRNTGSILANDASKTRAKGLIGNIHRLGCKNTIVSNLDARTAFPKAIGGFDRVLLDAP 464 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 465 CSGTGVISKDPKVKTSKTERDFLALPHMQKQLLLAAIDSTNHASKTGGYIVYSTCSVTVE 524 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + ++ + + P + + +D Sbjct: 525 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKTYMNKKFDDK-MP-LTRRYYPHRENVD 581 Query: 432 GFFAVALRR 440 GFF L++ Sbjct: 582 GFFVCKLKK 590 >gi|222642043|gb|EEE70175.1| hypothetical protein OsJ_30252 [Oryza sativa Japonica Group] Length = 688 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 26/318 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E + ++ + ++ L A L Sbjct: 234 YYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 293 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 294 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 353 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + + D + Sbjct: 354 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 413 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TGTI + P + ++ +DI A Q++LLL I V K GG +V+ Sbjct: 414 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVY 473 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CSL ++E V+ L+ V+LVP + + E + D + Sbjct: 474 STCSLMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRFREHRFHTSLDKTRRF 528 Query: 424 DGVSSGMDGFFAVALRRL 441 + MDGFF L++L Sbjct: 529 YPHVNNMDGFFVAKLKKL 546 >gi|115480547|ref|NP_001063867.1| Os09g0551300 [Oryza sativa Japonica Group] gi|50726314|dbj|BAD33889.1| putative nucleolar protein [Oryza sativa Japonica Group] gi|113632100|dbj|BAF25781.1| Os09g0551300 [Oryza sativa Japonica Group] gi|218202587|gb|EEC85014.1| hypothetical protein OsI_32305 [Oryza sativa Indica Group] Length = 699 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 124/318 (38%), Gaps = 26/318 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E + ++ + ++ L A L Sbjct: 234 YYGYNDFLVEAFIEMFPAVELVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 293 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 294 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 353 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + + D + Sbjct: 354 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 413 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TGTI + P + ++ +DI A Q++LLL I V K GG +V+ Sbjct: 414 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLAAIDLVDANSKTGGYIVY 473 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CSL ++E V+ L+ V+LVP + + E + D + Sbjct: 474 STCSLMIPENEAVIDYALKKR--NVKLVPCGLDFGRP---GFIRFREHRFHTSLDKTRRF 528 Query: 424 DGVSSGMDGFFAVALRRL 441 + MDGFF L++L Sbjct: 529 YPHVNNMDGFFVAKLKKL 546 >gi|149184704|ref|ZP_01863022.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21] gi|148832024|gb|EDL50457.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter sp. SD-21] Length = 393 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 150/453 (33%), Gaps = 81/453 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR S LL ++ K +L + ++ F +D+ +R Sbjct: 1 MTP--AARVQTSIELLDAIIEAARSKGAPADRILAEWFRNNRFAG--SKDRRAIR----- 51 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +++Y + V + A Sbjct: 52 ------------------------------------ELVYSAIRACGPVPESGRAAMLRL 75 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + + I+ + A + P W +RL ++A + Sbjct: 76 SESDASLVPLFDGSNYGPAPIDAGEESAEGGVAPAWLAQRLAQSGIDGE---EAEALLGR 132 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 ++L V D T + + E + + EG + VQD + Sbjct: 133 APLELRVNTLKADRATLSLPVETANTAAPHGLRLEPGTQVEQWAEWREGTFEVQDTGSQF 192 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 +V+DLCA GGKT A + + ++ A D + RL +L +R Sbjct: 193 ACLAADANPGETVIDLCAGGGGKTLALAAAMDNLGRLIASDADRGRLSRLAPRAERAGAT 252 Query: 290 AEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + ++ + DAV++DAPCS TGT RR+P+ W D ++ + Q Sbjct: 253 IIETRLLNPKREFEALADLEGQADAVMIDAPCSGTGTWRRNPEARWRLDEAELARLTALQ 312 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +LL VKPGG +++ CSL ++ + L+ +N+ + I + Sbjct: 313 SELLDLATRLVKPGGRIIYVTCSLLDEEGAGQFEAFLKR---------VNTFSSQEISLP 363 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 IR+TP G DGFF Sbjct: 364 AGRPRGNGIRLTP--------YHDGTDGFFIAR 388 >gi|224000816|ref|XP_002290080.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973502|gb|EED91832.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 494 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 129/325 (39%), Gaps = 30/325 (9%) Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNA- 195 Q +A + + + + +G L +A P + + V + A L Sbjct: 118 QDMAELFGYLQELVDYFLSMFGPNECLEFLEASDKPRPLVVRVNTLKARRKDLAAALMKR 177 Query: 196 -------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 G+++ E I + P + G + +Q A++ PV G VLD+ Sbjct: 178 GVRLDPLAPWSKVGLKIYESTVPIGATPEYLAGHYMLQSAASMCPVMALGPQPGDRVLDM 237 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK- 304 AAPGGKT+ + + + V A D+ R + NL RL + D + Sbjct: 238 SAAPGGKTSYVSQLMKNKGVVIANDLKPERQKATVANLHRLGVRNVVTCVYDGRKIGNQL 297 Query: 305 -KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV-----KPG 358 FD +L+DAPCS G I R P V R D+ + A Q++LLL I + K G Sbjct: 298 RNSFDRILLDAPCSGLGVISRDPSVKVQRTIPDVQRCAHLQKELLLAAIDALNAKSKKGG 357 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S CS+ ++EEVV +L + + L+ R P Sbjct: 358 GCMVYSTCSVAVAENEEVVNYLLSKRDVKLVETGLDFGKPGFTRFEHK-------RFHPS 410 Query: 419 --MLEKIDGVSSGMDGFFAVALRRL 441 + + MDGF+ +++L Sbjct: 411 LALTRRFYPHVHNMDGFYVAKIQKL 435 >gi|254569392|ref|XP_002491806.1| Probable RNA m(5)C methyltransferase [Pichia pastoris GS115] gi|238031603|emb|CAY69526.1| Probable RNA m(5)C methyltransferase [Pichia pastoris GS115] gi|328351694|emb|CCA38093.1| Putative ribosomal RNA methyltransferase Nop2 [Pichia pastoris CBS 7435] Length = 608 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 133/320 (41%), Gaps = 27/320 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + E+L N + + +A + + A KL + Sbjct: 228 CTYFGYTPFLAEKLFNLFSPSEAIEFFEANEIARPVTVRTNTLKARRRDLAQKLVNKGVN 287 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I ++ + I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 288 LQPIGKWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERILDMAAA 347 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT ++ + V A D +K R + L N+ RL + DA ++ F Sbjct: 348 PGGKTTFISAMMKNTGCVFANDSNKARTKSLIANIHRLGCRNTVVSNYDAREFPKVIGGF 407 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + +V R D ++ QR+LLL I V + GGI+V+ Sbjct: 408 DRVLLDAPCSGTGVIAKDSNVKVARTEKDFIQIPYLQRQLLLSAIDSVNANSRSGGIIVY 467 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E VV L+ P V LV K + ++ P ++ Sbjct: 468 STCSVAVEENEAVVNYALKKRPN-VRLVDTGLTIGKP-----GFTSYRGMKYHPSVNLTR 521 Query: 422 KIDGVSSGMDGFFAVALRRL 441 + + +DGFF +++ Sbjct: 522 RYYPHTYNVDGFFVAKFKKI 541 >gi|50291427|ref|XP_448146.1| hypothetical protein [Candida glabrata CBS 138] gi|49527457|emb|CAG61097.1| unnamed protein product [Candida glabrata] Length = 619 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 138/342 (40%), Gaps = 37/342 (10%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R S LL+ I + E+L N + L +A I + Sbjct: 222 AEGRSRSEYTDRLLKDICEYFGYTPFLAEKLFNLFSPAEALEFFEANEIARPITIRTNTL 281 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 282 KTSRRDLAQALVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGNYILQAASSFLPV 341 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N VLD+ +APGGKT + + + V A D +K+R + L N+ RL Sbjct: 342 VALDPQENERVLDMASAPGGKTTYISALMKNTGCVFANDANKKRTKSLIANIHRLGCTNT 401 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD VL+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 402 IVCNYDAREFPKVIGGFDRVLLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 461 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E VV LR P K +D + Sbjct: 462 AIDSVDANSKKGGVIVYSTCSVAVEEDEAVVDYALRKRPN-----------VKLVDTGLQ 510 Query: 407 LSPEGWI-----RITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + EG++ + P + + + +DGFF +++ Sbjct: 511 IGKEGFVSFRGKKFHPSLKLTRRYYPHTYNVDGFFVAKFQKI 552 >gi|302691038|ref|XP_003035198.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8] gi|300108894|gb|EFJ00296.1| hypothetical protein SCHCODRAFT_84537 [Schizophyllum commune H4-8] Length = 422 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 122/318 (38%), Gaps = 27/318 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE---TWAHKLNAVMLP 199 A E+ +L + + +A P + + A L + Sbjct: 33 ASYYGYNEFLATKLFQLFSVPEAIEFFEANEVPRPVTIRTNTLRTRRRDLAQTLINRGVN 92 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV + VLD+ +A Sbjct: 93 LEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPHERVLDMASA 152 Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + V A D +K+R + L N+ R+ + D ++ F Sbjct: 153 PGGKTTHIAALLQNTGVVFANDANKQRTKSLTANVHRMGCKNVVVCSYDGREFPKVIGGF 212 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V + D A Q++L+L + V K GG VV+ Sbjct: 213 DRVLLDAPCSGTGVISKDASVKINKSERDFTLLAHLQKQLILCALDSVTPNSKTGGYVVY 272 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E V+ LR P V+LV + + A + P + Sbjct: 273 STCSVTVDENEAVIDYALRKRPN-VKLVDTGLEFGRP-----AYTSFRGKTFHPSVGLAR 326 Query: 422 KIDGVSSGMDGFFAVALR 439 + MDGFF + Sbjct: 327 RFYPHVHNMDGFFVAKFK 344 >gi|260575597|ref|ZP_05843595.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2] gi|259022240|gb|EEW25538.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2] Length = 388 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 90/452 (19%), Positives = 143/452 (31%), Gaps = 78/452 (17%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L V+ S L S F D++ VR +V +R Sbjct: 1 MTP--AARLSAAIDILDRVLA-GNSAEQALTNWGRASRFAG--SGDRLAVRDLVFAAIRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 A+ L + LR A VD + Sbjct: 56 RRSFAALGGAETGRGL------VLGGLR-------------DAGVDPGPLFTGQGHAPPP 96 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + P+W L G + + A + + Sbjct: 97 LTEADSLPPTELPDLVALDC---------PDWLAPPLRAALGADFA-PVMAALRARASVF 146 Query: 180 LTVK---FDIETWAHKLNAVMLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDAS 229 L V E L + + + E I S + G+ +QDA+ Sbjct: 147 LRVNSARISREGAIAALASEGIAAQPHGLSSFALEVTENARKIQSSQTYLTGLVELQDAA 206 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL 288 + VQ + VLD CA GGKT + +G A D + RR+ L +R + Sbjct: 207 SQAVVQALPLRSGQRVLDYCAGGGGKTLAMAAAGGLQLFAHDANPRRMRDLPARAERAGV 266 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D + P FD VL D PCS +G+ RR P+ W + + Q +L Sbjct: 267 RLRLLETADLPRHAP---FDLVLTDVPCSGSGSWRRAPEAKWALTPARLAELCRIQAGIL 323 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + V PGG + ++ CS+ + ++ + L SP + Sbjct: 324 DRVAPLVAPGGHLAYATCSMLQAENSAQIAAFLARSPGWLL------------------- 364 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ G DGFF LRR Sbjct: 365 ----------QSSRLFTPLDGGDGFFVAILRR 386 >gi|162148166|ref|YP_001602627.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter diazotrophicus PAl 5] gi|161786743|emb|CAP56326.1| putative ribosomal RNA small subunit methyltransferase B [Gluconacetobacter diazotrophicus PAl 5] Length = 433 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 133/437 (30%), Positives = 200/437 (45%), Gaps = 29/437 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ ++ V+ R L LD + + A V LR + Sbjct: 23 PTRDIAFDIVQGVLEHRRMLETSLDQSAAARDADARDRAAAHRLAATV---LRHMGTAGM 79 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 VL+ L P ++ +L + VAQIL+LD +A V AV A+R + FA LVN Sbjct: 80 VLEPFLKKEPP---LPVRTVLLIGVAQILFLDTPAHAAVGTAVSLARR-RGLVPFAGLVN 135 Query: 126 SILRRVSREKIELLQRIAGIS-IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LRRV++ L+ + +P W + +++A +DLT++ Sbjct: 136 AVLRRVAQAGAGALEGLDQARLDVPPWLWGAWGSL-----ARPVAEALGQEAPLDLTLRP 190 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + VMLPTG +RL + LPG+A+G +WVQDA+A++P +L Sbjct: 191 GLPEAERPPGGVMLPTGTLRLPAGT-RVADLPGYAQGAFWVQDAAAALPARLLAPRAGER 249 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYCP 303 + DLCAAPGGKTAQL V+GA+VTA++ RL +L+ N +++ DA + P Sbjct: 250 IADLCAAPGGKTAQLAVAGAEVTAIEREPGRLARLKENWTASDWPTGCKLVQGDAATWRP 309 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 DAVL+DAPCS+TGT RHPDVLW + + R+ + P G+ Sbjct: 310 DAPLDAVLLDAPCSATGTAHRHPDVLWIKRPRLTALTEGQDRRRATCCVPC--PAGL--- 364 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 C + + R+ L P + + AL+ EGW+R P + Sbjct: 365 --CGVLA---PARRRAGTRTRGRGDGLEPDPFTAEELAVLPEALTKEGWLRTHPGLW--- 416 Query: 424 DGVSSGMDGFFAVALRR 440 GMDGFFA RR Sbjct: 417 -TEQGGMDGFFAARFRR 432 >gi|304409500|ref|ZP_07391120.1| Fmu (Sun) domain protein [Shewanella baltica OS183] gi|307303858|ref|ZP_07583611.1| Fmu (Sun) domain protein [Shewanella baltica BA175] gi|304352018|gb|EFM16416.1| Fmu (Sun) domain protein [Shewanella baltica OS183] gi|306912756|gb|EFN43179.1| Fmu (Sun) domain protein [Shewanella baltica BA175] Length = 463 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 150/449 (33%), Gaps = 50/449 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 42 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQ-E 98 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S++ S LL Q + E ++ + + L L Sbjct: 99 SAIYFASLSASALLEAHAWQ---------DIASAWHELSQSPIDYQQAQALAVESLDDKL 149 Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188 L + +P+WF + ++ L + + P++ D T Sbjct: 150 ALIQHLFPATEFKAQDLLPDWFWQVCPVDTAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 209 Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L L ++ + + +G +QD ++ + Q+ Sbjct: 210 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPYAH 269 Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D C+ GGKT S + + D+ LE+L R H Sbjct: 270 WWDACSGAGGKTLQLRSLMLAKAADNQTSSAGSIISSDIRSNALEELTKRAQRAHFNGIS 329 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 330 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 389 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK GGI+V++ CSL ++++VV L+ P L P+ + Sbjct: 390 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 440 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 441 MLTVWP--------FEANSDGMFVARMLR 461 >gi|261214775|ref|ZP_05929056.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260916382|gb|EEX83243.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya] Length = 252 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 102/220 (46%), Positives = 136/220 (61%), Gaps = 9/220 (4%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 QD +AS+P +L G + V DLCAAPGGKTAQL++ GA VTALD+S+ RL++L NL+R Sbjct: 38 QDVAASLPARLMGDIKGKRVADLCAAPGGKTAQLVLQGADVTALDLSENRLKRLNANLER 97 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L A+ + + D+ P +LFDAVL+DAPCSSTGT+RRHPDV WT+ DI K A Q Sbjct: 98 LGFEAKTV-ATNLMDFKPDELFDAVLLDAPCSSTGTVRRHPDVPWTKTPQDIAKLAELQG 156 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 KLL + VKPGG++VFSNCSL + EE+ +K P L P + Sbjct: 157 KLLAHAATLVKPGGVIVFSNCSLHPLEGEEMARKA----PENPLLEPFPITEQDCPGLEG 212 Query: 406 ALSPEGWIRITPDMLE----KIDGVSSGMDGFFAVALRRL 441 ++ EG++R TP L + +GMDGFFA +R+ Sbjct: 213 LVTAEGFLRSTPADLPPDRLDGNPHMAGMDGFFAARFKRV 252 >gi|282163719|ref|YP_003356104.1| NOL1/NOP2/sun family putative RNA methylase [Methanocella paludicola SANAE] gi|282156033|dbj|BAI61121.1| NOL1/NOP2/sun family putative RNA methylase [Methanocella paludicola SANAE] Length = 320 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 20/309 (6%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML--- 198 A PE+ R E F S YI + ++ + +L Sbjct: 18 AKKYRYPEYMVARFERFVPDLEKFLASMEAPPRTYIRVNTLRINANALTKRLTDKGFTLR 77 Query: 199 ---PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + + P SI + + G ++VQD S+ IP V+D+ A+PGGK Sbjct: 78 ETDIPDCLEVTAEPYSIGASAEYLLGYFYVQDKSSVIPPLALAPQPGDVVIDMAASPGGK 137 Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311 T Q ++ + + A++V R+ LR NL R + + MDA D + D +L Sbjct: 138 TTQLAQMMDNKGLLIAIEVEIARIAGLRSNLGRCGVMNTALFHMDARDIKKLEVKADKIL 197 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 +DAPC+ G I + +R DI + Q +L+ + +KPGG++V+S CS + Sbjct: 198 LDAPCTGEGVIAKDRTRKTSRGESDIQFCSGLQEELIDAAYACMKPGGVLVYSTCSFAPE 257 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E +V +++ + VE VP +S DM + R+ P + G Sbjct: 258 ENERIVDHLIKKYGMKVEPVPYGEPGIESFGDMKFDPQVKNARRLYPHL--------HGT 309 Query: 431 DGFFAVALR 439 GFF L+ Sbjct: 310 SGFFVARLK 318 >gi|323702581|ref|ZP_08114243.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans DSM 574] gi|323532400|gb|EGB22277.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans DSM 574] Length = 448 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 122/311 (39%), Gaps = 25/311 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM---L 198 ++ +P F +R+ +E + + L + D + ++ + Sbjct: 1 MTQLPVQFIQRMRETMTEEEFTSFMASYQERPRQGLRLNPLKIDRAEFVARMPFSLTPVP 60 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + P A G++++Q+ SA V++ VLDLCAAPGGK Sbjct: 61 WCDTGFYYSEADRPGKHPYHAAGLYYIQEPSAMAVVEVLQPEAGDKVLDLCAAPGGKATH 120 Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVD 313 + + A +++ +R L NL+R + FD ++VD Sbjct: 121 IAGCLGHTGLLVANEINAKRARALSENLERWGARHILVTNEQPEKLAGRFAGFFDKIVVD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ P+ + + A Q+ +L +KPGG++V+S C+ + ++ Sbjct: 181 APCSGEGMFRKLPEACTDWSEAKVAQCAVIQKDILPLAGRMLKPGGLMVYSTCTFSRAEN 240 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE ++ L + P +++++ D+ +R+ P + G Sbjct: 241 EEQIENFLGNHPEFTLEPVPKASFFQPGDLPD------TVRLWPHKISGE--------GH 286 Query: 434 FAVALRRLIQP 444 F LR+ +P Sbjct: 287 FIARLRKSGEP 297 >gi|296283759|ref|ZP_06861757.1| tRNA and rRNA cytosine-C5-methylase [Citromicrobium bathyomarinum JL354] Length = 396 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 93/454 (20%), Positives = 145/454 (31%), Gaps = 79/454 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + +L V+ + ++ + + +D+ VR Sbjct: 1 MTP--AARVQAAIAILDKVIEAAKGQGAPADRIVADWAKANRYAG--SKDRRAVR----- 51 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +++Y + V + A Sbjct: 52 ------------------------------------ELVYDAIRHCGPVPESGRAAMLAL 75 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 R + I+ + +A P W +RL K A + Sbjct: 76 AKRDTTISALFDGSQYGPAAIQPEEPVAKSGFAPAWLAKRLSASDVKGA---EGAALMGR 132 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 +D+ V D + L E I P + EG VQD + I Sbjct: 133 APLDVRVNALKADRASIDLPEPGEPLAAPHALRFEAGTQIEQWPAYREGRIEVQDHGSQI 192 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 +V+DLCA GGKT A + + ++ A D KRRL +L +R Sbjct: 193 ACLAAEARAGETVIDLCAGAGGKTLALAAAMENRGRLIASDTDKRRLSQLGPRAERAGAS 252 Query: 290 AEDIIEMDAFDYCPK-----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + +D D VL+DAPCS TGT RR P+ W D + + + Q Sbjct: 253 NVEQRLLDPGKEMEALGDLAGQADCVLIDAPCSGTGTWRRKPEAKWRLTPDRLARFSATQ 312 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDM 403 LL G VKPGG +VF CSL ++ + + L S +L PL + + Sbjct: 313 DALLALGAKLVKPGGRLVFITCSLLDEEGADRFARFLDSHDGWRADLPPLPLGRPRGGEN 372 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 A + ++ G DGFF Sbjct: 373 AQGI--------------RMSPFHDGTDGFFVAR 392 >gi|297803436|ref|XP_002869602.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] gi|297315438|gb|EFH45861.1| hypothetical protein ARALYDRAFT_492148 [Arabidopsis lyrata subsp. lyrata] Length = 650 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 19/249 (7%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + I + P + G + +Q AS+ +PV V+D+ AAPGGKT + + Sbjct: 285 VYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMK 344 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 + + A ++ RL+ L NL R+ + + D + + D VL+DAPCS Sbjct: 345 NTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELPKVLGQNSVDRVLLDAPCSG 404 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374 TG I + V ++ DDI K A Q++L+L I V K GG +V+S CS+ ++E Sbjct: 405 TGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSIMIPENE 464 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDG 432 V+ L++ V+LVP + + + R P + + MDG Sbjct: 465 AVIDYALKNR--DVKLVPCGLDFGRPGFSSFIEH-----RFHPSLEKTRRFYPHIHNMDG 517 Query: 433 FFAVALRRL 441 FF L+++ Sbjct: 518 FFVAKLKKM 526 >gi|294139860|ref|YP_003555838.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella violacea DSS12] gi|293326329|dbj|BAJ01060.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella violacea DSS12] Length = 459 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 81/463 (17%), Positives = 155/463 (33%), Gaps = 43/463 (9%) Query: 1 MKSGMNARLVSS-------HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53 M + A+ + L + +M K+ ++ + + +D+ ++R + Sbjct: 15 MNAETPAQKRALSYANTILQLFTQIMAKKQPADRIVGEYFRVNKKHG--SKDRRVIRESL 72 Query: 54 NVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 R+ ++ S+ + +L ++ ++ + + Sbjct: 73 FALFRWWGWLNKFSTSTGTSTANTGTQAWFTMLTLNA-RLESHSWEPFIAAWTGFSGQGK 131 Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 + + L N + + ++P WF + ++R+ + Sbjct: 132 NLTLEAGSALENVSEKCDWLTRQFPTISFTTDDLVPAWFWQTCPIQDAEQRLAMVQALSS 191 Query: 174 SPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 P + KL A + I L ++ L + EG +Q Sbjct: 192 RPPIWARVQNIETNEAIEKLAKLDITTTASEYFSDSISLGHKSINLNGLSLYREGELEIQ 251 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEK 278 D + + Q+ N + D C+ GGK+ Q + + A DV ++ LE+ Sbjct: 252 DLGSQVVGQVCNPSPNDNWWDTCSGAGGKSLQLRSLMLAKDKQATGTIIASDVRRKPLEE 311 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L R + D FD VLVDAPCS TGT RR+PD+ W + + Sbjct: 312 LAKRAKRAGFKGITASPWKSDDLPVAHNHFDGVLVDAPCSCTGTWRRNPDMRWIDAIETV 371 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q +L + VK G +V++ CSL ++E+VV L V + Sbjct: 372 LDKPGLQLDILSRSSQAVKAGATLVYATCSLSPLENEDVVNAFLAKHTDFSLEVTTHPFT 431 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 M + L + DG F ++R Sbjct: 432 GIEASMHLIL-----------------PYQADTDGMFVARMKR 457 >gi|212635464|ref|YP_002311989.1| Sun protein [Shewanella piezotolerans WP3] gi|212556948|gb|ACJ29402.1| Sun protein, putative [Shewanella piezotolerans WP3] Length = 417 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 148/448 (33%), Gaps = 68/448 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L V+++ L + L +Q + +V + + L Sbjct: 24 ELVISILDLVLKEGKPLDRAYSQHFS---GLQLEPSEQGRIT-LVTGAILRRLNLYCFLS 79 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 V + R L + + Q+ + VD E A R + + L + Sbjct: 80 DVKPEEMARMGSRLLNVWHL-FHQLPLPKMKYALQVDEQ-ELATRIETAKQKPVLWDGC- 136 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLT-VKFDI 186 P+W E + G + + ++ + +K Sbjct: 137 --------------------PDWLDEMGQAQMGDRWPAERAALNKPAKRFLRVNTLKCTR 176 Query: 187 ETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + A KL + T ++ F +G + QDA + + + Sbjct: 177 DELAKKLRNERVQTVEVEGVETALEVVSDSALFRTECFKKGWFEQQDAGSQLIAKALDAK 236 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + V+D CA GGK + + ++ A+DV + +L+ L+ R + II Sbjct: 237 PGMRVVDACAGAGGKTLSISAQMEGKGRLLAMDVEQWKLDNLKQRARRAAAHNVETRIIA 296 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 K D VL+D PCS G ++R+PD W + + Q+ +L V Sbjct: 297 SSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 356 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GGI++++ CS+ +++ V L + + N Sbjct: 357 KVGGILIYATCSIMPEENRHQVDAFLAENKHFRFIEDEN--------------------- 395 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I +G DGF+ L R+ + Sbjct: 396 -------ISPAETGFDGFYYAKLERIAE 416 >gi|332978163|gb|EGK14897.1| NOL1/NOP2/sun family protein [Desmospora sp. 8437] Length = 459 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 73/307 (23%), Positives = 123/307 (40%), Gaps = 22/307 (7%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY------IDLTVKFDIETWAHKLNAVMLPTG 201 +PE +++++ +E + I P + L+V + +L V Sbjct: 4 LPEDYQKQMRELLKEEYPVFIRTYDDPPHRGLRINTLKLSVAEGRQRLPFRLEPVPWCDT 63 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258 G + A G++++QD SA PV+ +LDLCAAPGGKT Q Sbjct: 64 GFFYDHDRDRPGKHVYHAAGLYYIQDPSAMAPVEALQPRPGEKILDLCAAPGGKTTQIAA 123 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPC 316 + + A ++SK R + L NL+R + I+ D FD VL+DAPC Sbjct: 124 HMKGKGILVANEISKERRKTLVENLERCGVPNALILGEDPRHLSTRFTGWFDRVLIDAPC 183 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G R+ PD +A Q +L ++PGG +V+S C+ + +++E V Sbjct: 184 SGEGMFRKDPDTRERWSHRSTEAAAELQLSILEAAAPMLRPGGRLVYSTCTFNPRENEGV 243 Query: 377 VQKVLRSSPIPV---ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 +Q+ L P + + + + + R+ P L+ G Sbjct: 244 LQRFLHQHPHFTPGQVPQAAHYRPARPDWIDASPTLAKGARLWPHHLKGE--------GH 295 Query: 434 FAVALRR 440 F L + Sbjct: 296 FVAVLEK 302 >gi|269859444|ref|XP_002649447.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi H348] gi|220067210|gb|EED44677.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi H348] Length = 311 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 22/303 (7%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 P+ E + K+R + + + D+ ++ + GI Sbjct: 21 FPKKEVEVFLDANEKKRPIILRVNTMLKRRKDILNLLYQRKV--EMEKLEWCEEGIIAFS 78 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264 + + P + G + VQ A++ +PV N+L+V+DLCAAPGGKT + + + Sbjct: 79 SAVPLGATPEYLAGYYIVQSANSFLPVLNLELNNDLTVVDLCAAPGGKTTHIAAIMNNTG 138 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 V A ++ K R LR N+ R+ I MDA + D VL+DAPCS TG I + Sbjct: 139 IVYANEICKERTYALRSNIQRMGFTNCIITNMDAKLFNIG-KVDRVLLDAPCSGTGVISK 197 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + ++ D+I K Q+ L+L +KP GI+++S CS +++EE+V+ ++R+ Sbjct: 198 DMSIKTSKSLDEIKKLQREQKILILHAFDMLKPNGILMYSTCSFLVEENEEIVEHLIRNR 257 Query: 385 PI------PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 V + +K D + L RI P + MDGFF + Sbjct: 258 KNAKIQNLDVNIGKDGFMSFKGQDFSNELRKAK--RIYPHV--------HNMDGFFYCKI 307 Query: 439 RRL 441 +++ Sbjct: 308 KKI 310 >gi|84994868|ref|XP_952156.1| nucleolar protein [Theileria annulata strain Ankara] gi|65302317|emb|CAI74424.1| nucleolar protein, putative [Theileria annulata] Length = 463 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 148/368 (40%), Gaps = 25/368 (6%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 ++ D + E+ + K +NS R EL Q + E Sbjct: 102 ELTGNKSVDLMDLSTVKERIENICGILSKWKSLNSTTRNRESYINELKQLVTVYYGYSEE 161 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM--------LPT 200 + + + DA PL + + + A L Sbjct: 162 LSDYFFKLFNPLEAIQFFDANEQPLPLTIRTNTLKTKRKDLAVNLINRGANVDPIGDWTK 221 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 G+ + I + P + G + +Q AS+ IPV N +LD+CAAPGGKT + Sbjct: 222 EGLVVHSSKVPIGATPEYLAGHYILQSASSLIPVLSLSPKPNEMILDMCAAPGGKTTHIG 281 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPC 316 + + + A D +K+R + L N+ RL + + + D +L+DAPC Sbjct: 282 QLMNNTGILFANDSNKQRCKSLVSNIHRLGILNSIVCNYKGEELLKVLPKMDRILLDAPC 341 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G I R P + R+ D+ +++ Q++LL I+ VKP GI+V+S CSL +++E+V Sbjct: 342 SGLGVISRDPSIKIKRNLKDLQRNSNLQKQLLSVSINLVKPNGIIVYSTCSLSIEENEQV 401 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML---EKIDGVSSGMDGF 433 + L+ ++L+PL A+S + P + + +DGF Sbjct: 402 LHYCLKKF--NIKLLPLGLEIGSP-----AISNFRGKKFHPSISKFARRFYPHKHNLDGF 454 Query: 434 FAVALRRL 441 F + +L Sbjct: 455 FIAKIIKL 462 >gi|168051136|ref|XP_001778012.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670660|gb|EDQ57225.1| predicted protein [Physcomitrella patens subsp. patens] Length = 492 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 32/374 (8%) Query: 77 RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 + L +LR + D V + + A R + + Sbjct: 117 KGPPDLPNILR---------RIKDIVRVLSSFK-ALRPEGAARADYVKQLSSDLSLYYGY 166 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 + + P K R +++ + DL Sbjct: 167 NDFLISTFLQMFPPAEVLEFLESNEKPRPISLRTNTLKSRRRDLAQVLINRGVNLDPLGK 226 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 G + + E + + P + G + +Q S+ +PV V+D+ AAPGGKT Sbjct: 227 WTKVGLV-VYESQVPVGATPEYMAGHYMLQSGSSFLPVMALAPQEKERVVDMAAAPGGKT 285 Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAV 310 + + + + A ++ + R++ L NL R+ + I D K + D V Sbjct: 286 TYIAALMKNTGVIYANELKEPRIKSLSANLHRMGVTNTIICNYDGRQLPHKLGLRSVDRV 345 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNC 366 L+DAPCS TG + + V T+ +DI + A Q++L+L I V K GG +V+S C Sbjct: 346 LLDAPCSGTGVVGKDESVKVTKSAEDIQRCAFLQKELILAAIDMVDANSKTGGYLVYSTC 405 Query: 367 SLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S+ ++E VV LR + + L + K + + + R P + Sbjct: 406 SVMVAENEAVVDYALRKRDVKIVPTGLEFGREGFTKFRESRFHHTLKNTRRFYPHV---- 461 Query: 424 DGVSSGMDGFFAVA 437 MDGFF Sbjct: 462 ----HNMDGFFVAK 471 >gi|50310429|ref|XP_455234.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644370|emb|CAG97942.1| KLLA0F03399p [Kluyveromyces lactis] Length = 619 Score = 150 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 129/336 (38%), Gaps = 27/336 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + + + LL+ I + E+L N + + +A + + Sbjct: 216 AEGKSRTEYVDRLLKDICHYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPVTIRTNTL 275 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 276 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 335 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 336 IALDPQENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNT 395 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 396 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFMQIPHLQKQLLLS 455 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++E VV LR P + K Sbjct: 456 AIDSVDSNSKTGGVIVYSTCSVAVDENEAVVDYALRKRPN------VKLVETKLAIGKEG 509 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRR 440 + P M + + +DGFF ++ Sbjct: 510 FTSYRGKTFHPSVKMTRRYYPHTYNVDGFFVAKFQK 545 >gi|315266772|gb|ADT93625.1| Fmu (Sun) domain protein [Shewanella baltica OS678] Length = 463 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 153/449 (34%), Gaps = 50/449 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 42 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQ--- 96 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 ++ L S +L + + E ++ + + L L Sbjct: 97 ----QESAVYFASLSASA--LLEAHT-WQDIANAWHELSQTPIDYQQAQALAVESLDDKL 149 Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188 L + +P+WF + ++ L + +C P++ D T Sbjct: 150 ALIQYLFPATEFKAQDLLPDWFWQVCPVDAAQQTQLIAAMSCRPPIWGRAQGITSQDAAT 209 Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L L ++ + + +G +QD ++ + Q+ + Sbjct: 210 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 269 Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D C+ GGKT +S + + D+ LE+L R + Sbjct: 270 WWDACSGAGGKTLQLRSLMLAKAADNQTLSAGSIISSDIRSNALEELTKRAQRANFNGIS 329 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 330 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 389 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK GGI+V++ CSL ++++VV L+ P L P+ + Sbjct: 390 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 440 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 441 MLTVLP--------FEANSDGMFVARMLR 461 >gi|302828600|ref|XP_002945867.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f. nagariensis] gi|300268682|gb|EFJ52862.1| hypothetical protein VOLCADRAFT_120224 [Volvox carteri f. nagariensis] Length = 829 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 31/325 (9%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV-------- 196 ++ + N + L + +A P I L A+ Sbjct: 223 YYGYNDFMIDMYLNMFSVAEALELMEANEVPRPITLRTNTLRTRRRELAAALIQRGVSLD 282 Query: 197 ---MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 G+ + E I + P + G + +Q AS+ +PV +V+D+ AAPG Sbjct: 283 PIGPWSKVGLVVYESKVPIGATPEYMAGHYMLQGASSFMPVMALAPQPEETVVDMAAAPG 342 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A ++SK RL+ + NL RL + + D + ++ Sbjct: 343 GKTTYIAALMRNTGTIFANEISKDRLKSITGNLTRLGVTNTIVCNYDGRELPGVLGERSV 402 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG + + P V ++ DI + Q++LLL I V GG +V+ Sbjct: 403 DRVLLDAPCSGTGVVSKDPTVKTSKSQQDIWRCGHLQKELLLAAIDMVDANSPTGGYIVY 462 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLE 421 S CS+ ++ E ++ LR + V L + R P Sbjct: 463 STCSVCVEEDEVIINYALRKRNVKVVPTGLEFGREGFVRYR-------DFRFHPSLKHAR 515 Query: 422 KIDGVSSGMDGFFAVALRRLI-QPK 445 + + +DGFF L++L +PK Sbjct: 516 RFYPHAHNLDGFFVCKLKKLSNEPK 540 >gi|297796467|ref|XP_002866118.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp. lyrata] gi|297311953|gb|EFH42377.1| hypothetical protein ARALYDRAFT_495674 [Arabidopsis lyrata subsp. lyrata] Length = 674 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 21/250 (8%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + I + P + G + +Q AS+ +PV N ++D+ AAPGGKT + + Sbjct: 314 IYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMK 373 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 + + A ++ RL+ L NL R+ + + D + + D VL+DAPCS Sbjct: 374 NTGLIYANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSG 433 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374 TG I + V T+ D+I K A Q++LLL I V K GG VV+S CS+ ++E Sbjct: 434 TGIISKDESVKITKTVDEIKKFAHLQKQLLLGAIDMVDANSKTGGYVVYSTCSIMVTENE 493 Query: 375 EVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 V+ L+ + + L + + + S + R P + MD Sbjct: 494 AVIDYALKKRDVKLVTCGLDFGRKGFTRFREHRFQPSLDKTRRFYPHV--------HNMD 545 Query: 432 GFFAVALRRL 441 GFF L+++ Sbjct: 546 GFFVAKLKKM 555 >gi|225554205|gb|EEH02543.1| nucleolar protein NOP2 [Ajellomyces capsulatus G186AR] Length = 704 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 136/318 (42%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L + A +A SP + + ++ + + A L + Sbjct: 258 CTYYGYTPFLAEKLFKLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVV 317 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 318 LEPVGKWSKVGLQIFESAIPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAA 377 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGKT + + + V A D SK R + L N+ RL I +DA PK Sbjct: 378 PGGKTTYISALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIISNLDARQAFPKILGG 437 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS----FVKPGGIVV 362 FD VL+DAPCS TG I + P++ ++ D + Q++LLL I K GG +V Sbjct: 438 FDRVLLDAPCSGTGVISKDPNIKTSKSERDFLALPHMQKQLLLAAIDSTNHLSKTGGYIV 497 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ LR+ P V++V + + + + ++ + + Sbjct: 498 YSTCSVTVEENEAVVQYALRNRPN-VKIVDTGLGNFGTPGFKSYMGKKFDDKM--SLSRR 554 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGF+ L++ Sbjct: 555 YFPHKENVDGFYVCKLKK 572 >gi|262089596|gb|ACY24694.1| Sun protein [uncultured organism] Length = 301 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 132/309 (42%), Gaps = 32/309 (10%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHKLNAVMLPTGGIR 204 P W +++L+ F+ E AI A + + L V + + ++L V Sbjct: 7 HPRWLQKQLKAFWP-EHWQAICAANNAHPPLILRVNRRHGSRDEYLNELRTVGFDAEACP 65 Query: 205 LKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + +LPGFAEG VQD +A + L VLD C APGGKT Sbjct: 66 FSRDGIRLLAACDVTTLPGFAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCH 125 Query: 259 LIVSGA---KVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVD 313 L+ + V A+D+ ++RL ++R NL RL L A + + F +L+D Sbjct: 126 LLEAEPALAGVVAVDLEQKRLVRVRENLQRLGLEAELIAADARAVDAWWDGQAFQRILLD 185 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+TG IRRHPD+ TR +DI A Q ++L + GGI++++ CS ++ Sbjct: 186 APCSATGVIRRHPDIKLTRQPEDITALAQLQGEMLDALWPTLAVGGILLYATCSTLPTEN 245 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EV++ L + EL ++ +G DGF Sbjct: 246 TEVIEAFLARTSGARELDIAGPFGLPQP-----------------HGRQLLAQENGHDGF 288 Query: 434 FAVALRRLI 442 + L ++ Sbjct: 289 YYAKLIKIA 297 >gi|260426055|ref|ZP_05780034.1| Fmu [Citreicella sp. SE45] gi|260420547|gb|EEX13798.1| Fmu [Citreicella sp. SE45] Length = 384 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 85/454 (18%), Positives = 126/454 (27%), Gaps = 82/454 (18%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR ++ +L + L S F +D+ VR V LR Sbjct: 1 MTP--AARIQAAAEILDRI-ASGTPAEQALLGWSRASRFAG--SKDRAAVRDHVFDVLRR 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 AV R + + LLR D D + A Sbjct: 56 WRSTAAV------GGGERGRARMLGLLR--------QDGIDPDTLFTGEGHAPSPLSEDE 101 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A + A +P+W + + ++A + Sbjct: 102 RAAG--------------RVPEGAEALDMPDWLWPGF-SANLGAEAVPAAEALRHRAPVF 146 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKE----------LPESIVSLPGFAEGVWWVQDAS 229 L V T A+ G R I F EG+ +QDA+ Sbjct: 147 LRVNTLRNTLDEAQAALATEGIGTRPHPLADTALEVIAGARGIARSAAFTEGLVELQDAA 206 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHL 288 + V VLD CA GGK + A D R+ L R Sbjct: 207 SQAVVAQLPLGPGQRVLDYCAGGGGKALAMAARLRGAVEAHDADPGRMSDLPARAARAGA 266 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + P +D VL D PCS +G+ RR P+ W D + + Q +L Sbjct: 267 EIVRTAK-------PSGRYDLVLCDVPCSGSGSWRRAPEGKWRLTEDGLTRLLSVQAGIL 319 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 V GG + ++ CS+ ++ V+ L + Sbjct: 320 DTVAPLVADGGTLAYATCSMLAPENAAQVEGFLGRHAGWQVVT----------------- 362 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P G DGFF L R Sbjct: 363 ---QRQFLP---------RDGGDGFFMACLTRTA 384 >gi|288932862|ref|YP_003436922.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] gi|288895110|gb|ADC66647.1| RNA methylase, NOL1/NOP2/sun family [Ferroglobus placidus DSM 10642] Length = 306 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 19/275 (6%) Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + + VK +E + + +P E I P FA G+ ++Q+AS+ IP + Sbjct: 43 LKIDVKSVVERLSEEFELERVPWCKEGFFVYGEGITKTPEFALGLIFMQEASSMIPPVVM 102 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 NL VLD+ AAPG K +Q + + V A DV RL L N+ + + Sbjct: 103 DLKENLFVLDMAAAPGAKTTQISQYMNNTGCVIANDVKYSRLNILISNVQKYGCINVVVT 162 Query: 295 EMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 E D + + FD VL+DAPCS+ G IR++ L ++ + Q+ L+L Sbjct: 163 EKDGRYFGRFRDTFDRVLLDAPCSNVGMIRKNYKYLKLWRQMEVEALSRLQKSLILAAYK 222 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE- 410 +KP G++V+S C+LD +++EEV+ +L ++ +E + P+ S S E Sbjct: 223 ALKPKGVLVYSTCTLDPEENEEVIDYLLYNTDAKLEKIKLPVKSTEPILEFNGKRYSEEV 282 Query: 411 -GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +RI P + +GFF ++++P Sbjct: 283 KKCLRIHPQD--------NDTEGFFVA---KVVKP 306 >gi|126726573|ref|ZP_01742414.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium HTCC2150] gi|126704436|gb|EBA03528.1| NOL1/NOP2/sun family protein [Rhodobacterales bacterium HTCC2150] Length = 390 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 151/453 (33%), Gaps = 76/453 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L +M + L F D+ +R I LR Sbjct: 1 MTP--PARHAAAIQILDLIM-SGQDVEKALKDWARGHRFAG--SGDRAAIRDICFEVLRK 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + A+ SL + LLR D + + + Sbjct: 56 KRSVAALGSGETGRSL------VLGLLR-----------------DQQRDPSDIFTGATY 92 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ ++ + + P W + G + + + + Sbjct: 93 APPVL--TDDELATGDDVGILAEDVAADCPAWLWPIVNKSLG-DECGDVFQILRNRAPLT 149 Query: 180 LTVKFDIETWAHKLNAVMLP----------TGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + T + A+ I L + P ++ +LP + EG+ +QD + Sbjct: 150 MRANLRKSTRKQAMTALADHGINAVENPISPAAIDLPDYPRNLKNLPPYLEGLVELQDGA 209 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT-AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V+L L + +LD CA GGKT A TA D +R++ + +R + Sbjct: 210 SQAIVELLPDLVDADILDFCAGGGGKTLAIAGKLSGTFTAHDAFVQRMKDIPARAERAGI 269 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 E + + ++ FD V DAPCS +G+ RR P W + QRK+L Sbjct: 270 EVEILDAL----PDEERKFDLVFCDAPCSGSGSWRRDPAGKWNISPTSLTDVCDLQRKIL 325 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +Q FV G + ++ CS ++ + V+ L + P L+ Sbjct: 326 VQAAEFVAADGYLAYATCSFLPDENTDQVKAFLEADP------------------KWRLT 367 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + P DGF+ L+RL Sbjct: 368 TEK--QFLPTPQ---------GDGFYIAILKRL 389 >gi|311109240|ref|YP_003982093.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310763929|gb|ADP19378.1| ribosomal RNA small subunit methyltransferase B [Achromobacter xylosoxidans A8] Length = 445 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 108/441 (24%), Positives = 178/441 (40%), Gaps = 47/441 (10%) Query: 25 LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQ 84 + +LD A + + +A+ +R+L DAV ++ SL Sbjct: 25 VEGVLDGRSLTDALSDVESALRPATQAVSFHAMRYLGWADAVGREMVQRYPSVLFESLLL 84 Query: 85 LLRV-------SVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 + + + + + V A + VVD AV A R +E F ++N+ LRR RE+ Sbjct: 85 VSLTLLKEEGEAASALPGMPVYAPHTVVDQAVTAASRSRELASFKGMLNACLRRFLRERA 144 Query: 137 ELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 L +A P W+ ++L Y +E ++ A + + L V + Sbjct: 145 ALEAAVADSPEAQWNHPGWWVKQLSVAYPREWREILAAANLPAP-LTLRVNRRRASREQV 203 Query: 193 LNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L A + P+ + LPGFAEG W VQDA A + +L + + V Sbjct: 204 LAAFQAAGLAAEPVGQSGLVLATPKPVTQLPGFAEGWWSVQDAGAQLAAELLAPADGMRV 263 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE-KLRCNLDRLHLYAEDII-----EMDAF 299 LD C+APGGKTA L+ + ++ NLDRL L ++ + D Sbjct: 264 LDACSAPGGKTAHLLELADIDLLALDADADRLVRVGQNLDRLGLASDRVQLKAADAADLD 323 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + K FDAVL D PC+++G +RRHPD+ W R +D+ ++A Q +L V PGG Sbjct: 324 AWWDGKPFDAVLADVPCTASGIVRRHPDIRWLRRENDVRRTATLQSSILDALWRTVAPGG 383 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++ CS+ + + ++ P L ++ P Sbjct: 384 RLLYVTCSIFPIEGARQALEFMQRHPDAQRLEAPG-------------------QLLPVA 424 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 ++ DGFF + Sbjct: 425 VDATPAAQH--DGFFYALFAK 443 >gi|255535827|ref|YP_003096198.1| ribosomal RNA small subunit methyltransferase B [Flavobacteriaceae bacterium 3519-10] gi|255342023|gb|ACU08136.1| ribosomal RNA small subunit methyltransferase B [Flavobacteriaceae bacterium 3519-10] Length = 401 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 81/441 (18%), Positives = 156/441 (35%), Gaps = 70/441 (15%) Query: 12 SHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L R +++ + D+ +V I +R+ R++ + Sbjct: 13 HDALQETFFEDRKYADKVIERLLKANRKWG--SEDRKVVSQIFYDIIRWKKRLEYYMGEG 70 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +L + K+ F + N+ + Sbjct: 71 VK-----PNNIYKLIL---TYCL---------------WTKTHYKKFEEFDGIKNAEILN 107 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIET 188 ++ + + IPEW E +E G ++ I T+K + Sbjct: 108 KLKKNTVPTK--SIEHSIPEWLAETMEKELGPTWEREMNALNEQAPTILRANTLKTTTKE 165 Query: 189 WAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L + + IR +++ F +G++ VQDAS+ +L Sbjct: 166 LISDLKDENVESSTIRNYPDAVQLVEKKNVFLTSAFKDGLFEVQDASSQKIGELLDVQEG 225 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + V+D CA GGKT L +++ ++ ALD+ +L +L+ R + + +D Sbjct: 226 MRVIDACAGAGGKTLHLAALMINKGQIIALDIYAWKLAELKRRAKRAGAHNIEARLIDDN 285 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + D VL+DAPCS G ++R+PD W D D I + Q+++L +K Sbjct: 286 KVIKRLHGTADRVLIDAPCSGLGVLKRNPDSKWKIDQDFIDRIKKEQQQILQDYSKMLKK 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V++ CS+ ++ E V L+++ + E + Sbjct: 346 GGKMVYATCSILPSENSEQVGIFLKNNEEF-----------------TLIREEKVM---- 384 Query: 418 DMLEKIDGVSSGMDGFFAVAL 438 S G DGF+ + Sbjct: 385 --------PSDGFDGFYMALI 397 >gi|71404146|ref|XP_804805.1| nucleolar protein [Trypanosoma cruzi strain CL Brener] gi|70867957|gb|EAN82954.1| nucleolar protein, putative [Trypanosoma cruzi] Length = 328 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 9/242 (3%) Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 ++ E I + G + +Q A + +PV VLD+ AAPGGKT + + Sbjct: 21 QVFESNVPIAGTIEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLM 80 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSST 319 + + A DVS+ R + L NL RL + + D Y FD VL+DAPC+ + Sbjct: 81 KNTGVLFANDVSEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKNFDRVLLDAPCTGS 140 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G I R + ++ +D+ +++ QR LLL I VK GG VV+S CS +++E VV+ Sbjct: 141 GIISRDKSIKSSKHYEDVQRASQQQRTLLLSAIDAVKVGGYVVYSTCSFLVEENEAVVEF 200 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +R + + + L E + MDGFF L+ Sbjct: 201 AVRRRHVEIVEMGLPFGRPGLTKYRHHRFQEKM-----QCSRRFFPHVHNMDGFFVCKLK 255 Query: 440 RL 441 +L Sbjct: 256 KL 257 >gi|217974125|ref|YP_002358876.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS223] gi|217499260|gb|ACK47453.1| Fmu (Sun) domain protein [Shewanella baltica OS223] Length = 463 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 82/449 (18%), Positives = 152/449 (33%), Gaps = 50/449 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 42 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQ-E 98 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S++ + LL Q + + E ++ + + L L Sbjct: 99 SAVYFASLNASALLEAHAWQ---------DIANAWHELSQSPIDYQQAQALAVESLDDKL 149 Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188 L + +P+WF + ++ L + + P++ D T Sbjct: 150 ALIQHLFPATEFKAQDLLPDWFWQVCPVDAAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 209 Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L L ++ + + +G +QD ++ + Q+ + Sbjct: 210 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 269 Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D C+ GGKT S + + D+ LE+L R H Sbjct: 270 WWDACSGAGGKTLQLRSLMLAKAADNQTSSAGSIISSDIRSNALEELTKRAQRAHFNGIS 329 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 330 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 389 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK GGI+V++ CSL ++++VV L+ P L P+ + Sbjct: 390 CRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 440 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 441 MLTVWP--------FEANSDGMFVARMLR 461 >gi|327355493|gb|EGE84350.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 692 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 36/370 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + + + + + + ++ A N ++ + + Sbjct: 213 QLLRSRITETIRI--LGDLSTLGRPSKSRADYTNLLISDICTY-----------YGYTPY 259 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L N + A +A SP + + ++ + + A L + + Sbjct: 260 LAEKLFNLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 319 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N VLD+ AAPGGKT + Sbjct: 320 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 379 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL + +DA + PK FD +L+DAP Sbjct: 380 ALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIVSNLDAREAFPKILGGFDRILLDAP 439 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P + ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 440 CSGTGVISKDPSIKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVE 499 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + S + + + P + + +D Sbjct: 500 ENEGVVQYALRKRPN-VKIVDTGLGNFGSPGFKSYMGKKFDDK-MP-LTRRYYPHRENVD 556 Query: 432 GFFAVALRRL 441 GF+ L+++ Sbjct: 557 GFYVCKLKKM 566 >gi|261200155|ref|XP_002626478.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239593550|gb|EEQ76131.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239607570|gb|EEQ84557.1| nucleolar RNA methyltransferase [Ajellomyces dermatitidis ER-3] Length = 654 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 36/370 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + + + + + + ++ A N ++ + + Sbjct: 213 QLLRSRITETIRI--LGDLSTLGRPSKSRADYTNLLISDICTY-----------YGYTPY 259 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L N + A +A SP + + ++ + + A L + + Sbjct: 260 LAEKLFNLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 319 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N VLD+ AAPGGKT + Sbjct: 320 VGLQVFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERVLDMAAAPGGKTTYIS 379 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL + +DA + PK FD +L+DAP Sbjct: 380 ALMRNTGCVLANDASKPRAKGLIGNIHRLGCKNTIVSNLDAREAFPKILGGFDRILLDAP 439 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P + ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 440 CSGTGVISKDPSIKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVE 499 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + S + + + P + + +D Sbjct: 500 ENEGVVQYALRKRPN-VKIVDTGLGNFGSPGFKSYMGKKFDDK-MP-LTRRYYPHRENVD 556 Query: 432 GFFAVALRRL 441 GF+ L+++ Sbjct: 557 GFYVCKLKKM 566 >gi|218191489|gb|EEC73916.1| hypothetical protein OsI_08757 [Oryza sativa Indica Group] Length = 695 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 125/325 (38%), Gaps = 40/325 (12%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E + ++ + ++ L A L Sbjct: 229 YYGYNDFLVEAFIEMFPAVELVELLESFEKKPPECLRTNTLKTRRRDLAAALIPRGFNLD 288 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 289 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 348 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + + D + Sbjct: 349 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 408 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TGTI + P + ++ +DI A Q++LLL I V K GG +V+ Sbjct: 409 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKQLLLSAIDLVDANSKTGGYIVY 468 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML--- 420 S CSL ++E VV L+ V+LVP + + G+IR Sbjct: 469 STCSLMIPENEAVVDYALKKR--NVKLVPCGLDFGRP----------GFIRFREHRFDTS 516 Query: 421 ----EKIDGVSSGMDGFFAVALRRL 441 + + MDGFF L++L Sbjct: 517 LDKTRRFYPHVNNMDGFFVAKLKKL 541 >gi|13435750|gb|AAH04733.1| Nop2 protein [Mus musculus] Length = 432 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 21/224 (9%) Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + +LD+C APGGKT+ + + + + A D + RL+ + NL RL + Sbjct: 1 MALAPQEHERILDMCCAPGGKTSYIAQLMENTGVILANDANADRLKSVVGNLHRLGVTNT 60 Query: 292 DIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 I D + FD VL+DAPCS TG I + P V +D DI + A Q++LLL Sbjct: 61 IISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDIQRCAHLQKELLLS 120 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG +V+ CS+ +++E VV L+ V LVP + + Sbjct: 121 AIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLDFGQ-----EG 173 Query: 407 LSPEGWIRITPDM--LEKIDGVSSGMDGFFAVALRR----LIQP 444 + R P + + + MDGFF ++ + QP Sbjct: 174 FTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQP 217 >gi|67619571|ref|XP_667654.1| nucleolar protein-like [Cryptosporidium hominis TU502] gi|54658807|gb|EAL37423.1| nucleolar protein-like [Cryptosporidium hominis] Length = 542 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 138/339 (40%), Gaps = 29/339 (8%) Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL---T 181 NS S +L I+ + + N + + L +A + + + Sbjct: 107 NSKKASRSELMDKLADDISILYGYNTELTNYILNLFSPKEALDFFEANENKRPLTIRTNM 166 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIP 233 +K A KL + I + P + G + +Q AS+ IP Sbjct: 167 LKSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGATPEYLAGHYMIQSASSLIP 226 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD+ AAPGGKT + + + + A D+ K R L NL R+ + Sbjct: 227 VMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMGINN 286 Query: 291 EDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 ++ MD + D VL+DAPC+ G I R P V R ++ + + Q++LL Sbjct: 287 SIVVNMDGKELGSFLPKLDRVLLDAPCTGLGIIARDPSVKVKRSIKELAQHSLLQKELLK 346 Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 + V K GG +V+S CS+ +++E VV +LR+ V+LVPL + Sbjct: 347 AAVDMVDANSKTGGYIVYSTCSISIEENEMVVDYILRTR--HVKLVPLGVEIG-----SN 399 Query: 406 ALSPEGWIRITP---DMLEKIDGVSSGMDGFFAVALRRL 441 +S R P +I + MDGFF L+++ Sbjct: 400 GISKFREHRFNPTISTYTRRIYPHLNNMDGFFVAKLKKI 438 >gi|157375527|ref|YP_001474127.1| Fmu (Sun) domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317901|gb|ABV36999.1| Fmu (Sun) domain protein [Shewanella sediminis HAW-EB3] Length = 419 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 76/449 (16%), Positives = 141/449 (31%), Gaps = 70/449 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L V+ + L + + L+ +Q + + LR L Sbjct: 27 ELVISVLDMVLSEGKPLDRAYSVHFS---GLQLAPSEQARITKVAGDILRRLNLYCF--- 80 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + R+ + + + + + Sbjct: 81 -LSDVKPEEMS-------RLGT-----RLINAWHLFHELE--------LPKLQYSLPLVE 119 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185 E ++ A PEW E ++ G+ A + + Sbjct: 120 AEYFARLEEAKKQPALWDGCPEWLDEMGQSQLGEAWAK-ERAALNTQPKRFIRTNLLKCT 178 Query: 186 IETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E A KL + T + + ++ F +G + QDA + + Sbjct: 179 REELAKKLRNEQVQTQEVEGVDTALEVTSDSALFRTESFKKGWFEQQDAGSQLVAAAVDA 238 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DII 294 + V+D CA GGK A + ++ A+DV + +L+ L+ R + II Sbjct: 239 KPGMRVIDACAGAGGKTLSIASQMKGKGRLLAMDVEQWKLDSLKQRARRANADNIETRII 298 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 299 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRM 358 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GG++V++ CS+ +++ V L + + Sbjct: 359 VKVGGMLVYATCSIMPEENRNQVDAFLAENDHFKFIED---------------------- 396 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E I SG DGF+ L R+ + Sbjct: 397 ------ETISVADSGFDGFYLAKLERIAE 419 >gi|255261330|ref|ZP_05340672.1| Fmu [Thalassiobium sp. R2A62] gi|255103665|gb|EET46339.1| Fmu [Thalassiobium sp. R2A62] Length = 391 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 79/450 (17%), Positives = 139/450 (30%), Gaps = 73/450 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + L ++ +L F +D+ +R V LR Sbjct: 1 MTPS--ARVAAAIECLDAILVGGA-AEKVLTTWARTHRFAG--SKDRAAIRDHVFGALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 A+ + + LD D + Sbjct: 56 RRSYAAIGGAETGRGI-----------MIGAC----LDT----GGDSDAWFDGKGYGAAI 96 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--- 176 + + + + + + +W E+ + G + Sbjct: 97 LTQDEQDGIGTFASQDR------SVQMDVQDWMVEQFDTSLGAQATDIALKLRERAPVFV 150 Query: 177 --YIDLTVKFDIETWAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASA 230 + L D + ++ + + + P + + G+ +QDA++ Sbjct: 151 RVNLRLGTVDDAVVQLGLDDIEVVRHPDVATALEVTKNPRRVQLSSAYLGGLIELQDAAS 210 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 V +LD CA GGK A ++ A++ A D + R++ L DR Sbjct: 211 QAVVAAIPLPEQGRILDYCAGGGGKSLAMAALTKAEIFAHDSAPERMKDLWTRADRAG-- 268 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +I D + F+ VL DAPCS +G RR P W +D+ Q +L Sbjct: 269 -VNIANFDTNNAPQGADFNVVLCDAPCSGSGAWRRAPAGKWAFTPEDLSAFCQTQAGILD 327 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +V PGG++ ++ CSL ++ + V L +P + Sbjct: 328 DAKKWVMPGGLLAYATCSLFAVENADQVDAFLGKNPSW--------------------TC 367 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 E I+ TP DGFF LR Sbjct: 368 ESQIQFTP---------LDHGDGFFVALLR 388 >gi|226290863|gb|EEH46291.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb18] Length = 660 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 151/369 (40%), Gaps = 36/369 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + + + + + + + A N +L + + Sbjct: 227 QLLRSRI--MESIRILSDLSTLGQTGKSRADYTNLLLADICTY-----------YGYTPF 273 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L N + A +A SP + + ++ + + A L + + Sbjct: 274 LAEKLFNLFPPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 333 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 + + P + G + +Q AS+ +PV N +LD+ AAPGGKT + Sbjct: 334 VGLQVFESSVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGGKTTYIS 393 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAP 315 + + V A D SK R + L N+ RL + +DA + PK FD +L+DAP Sbjct: 394 ALMRNTGCVLANDASKHRAKGLIGNIHRLGCKNTIVSHLDAGEAFPKILGGFDRILLDAP 453 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + P V ++ D + Q++LLL I K GG +V+S CS+ + Sbjct: 454 CSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVE 513 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VVQ LR P V++V + + + + ++ + + +D Sbjct: 514 ENEGVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMGKKFDEKM--ALTRRYYPHRENVD 570 Query: 432 GFFAVALRR 440 GF+ L++ Sbjct: 571 GFYVCKLKK 579 >gi|126173630|ref|YP_001049779.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS155] gi|125996835|gb|ABN60910.1| Fmu (Sun) domain protein [Shewanella baltica OS155] Length = 453 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 151/449 (33%), Gaps = 50/449 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 32 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQQ-E 88 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 S++ S LL Q + E ++ + + L L Sbjct: 89 SAIYFASLSASALLEAHAWQ---------DIASAWHELSQSPIDYQQAQALAVESLDDKL 139 Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188 L + +P+WF + ++ L + + P++ D T Sbjct: 140 ALIQHLFPATEFKAQDLLPDWFWQVCPVDTAQQTQLIAAMSSRPPIWGRAQGITSQDAAT 199 Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L L ++ + + +G +QD ++ + Q+ + Sbjct: 200 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 259 Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D C+ GGKT S + + D+ LE+L R H Sbjct: 260 WWDACSGAGGKTLQLRSLMLAKAADNQTSSAGSIISSDIRSNALEELMKRAQRAHFNGIS 319 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 320 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 379 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK GGI+V++ CSL ++++VV L+ P L P+ + Sbjct: 380 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 430 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 431 MLTVWP--------FEANSDGMFVARMLR 451 >gi|66475704|ref|XP_627668.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa II] gi|32398900|emb|CAD98365.1| nucleolar protein-like, probable [Cryptosporidium parvum] gi|46229100|gb|EAK89949.1| Nop2p family of SUN/fmu RNA methylase [Cryptosporidium parvum Iowa II] gi|323508963|dbj|BAJ77374.1| cgd6_3230 [Cryptosporidium parvum] Length = 542 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 29/339 (8%) Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL---T 181 NS S +L I+ + + N + + L +A + + + Sbjct: 107 NSKKASRSELMDKLADDISILYGYNTELTNYILNLFSPKEALDFFEANENKRPLTIRTNM 166 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIP 233 +K A KL + I + P + G + +Q AS+ IP Sbjct: 167 LKSRRRDLAQKLISRGANVDPTGEWTKVGLTIYSSSVPIGATPEYLAGHYMIQSASSLIP 226 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V +LD+ AAPGGKT + + + + A D+ K R L NL R+ + Sbjct: 227 VMALAPQPGEKILDMAAAPGGKTTYIGQLMKNSGILYANDLRKDRCTGLIANLHRMGINN 286 Query: 291 EDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 ++ MD + D VL+DAPC+ G I R P V R ++ + + Q++LL Sbjct: 287 SIVVNMDGKELGSFLPKLDRVLLDAPCTGLGIIARDPSVKVKRSIKELAQHSLLQKELLK 346 Query: 350 QGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 + V K GG +V+S CS+ +++E V+ +LR+ V+LVPL + Sbjct: 347 AAVDMVDANSKTGGYIVYSTCSISIEENEMVIDYILRTR--HVKLVPLGVEIG-----SN 399 Query: 406 ALSPEGWIRITP---DMLEKIDGVSSGMDGFFAVALRRL 441 +S R P +I + MDGFF L+++ Sbjct: 400 GISKFREHRFNPTISTYTRRIYPHLNNMDGFFVAKLKKI 438 >gi|219112587|ref|XP_002178045.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410930|gb|EEC50859.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 528 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 144/394 (36%), Gaps = 38/394 (9%) Query: 76 PRKKYSLQQLLRVSVAQI-----LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + +++ L SV + L DV + E K R Sbjct: 140 EEMRRTVR--LHTSVYHLPTTEELQRDVDRVVPPSEIRSHIESILEVLADFKTRREPGRA 197 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIE 187 +L +A I E +G + +A + + + Sbjct: 198 RKEYIDQLGLFLAEIQGYLPELIEYFLTMFGPAETVEFVNASDKTRPLVIRANTLKTRRK 257 Query: 188 TWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 A L G+++ E P I + P + G++ +Q A++ PV Sbjct: 258 DLAAALMKRGVTLDPLANWSKVGLKIMESPVPIGATPEYLSGMYMLQSAASMCPVLALAP 317 Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 VLD+ AAPGGKT+ + + + + A D+ R + N+ RL + Sbjct: 318 EPKERVLDMSAAPGGKTSYIAQLMRNTGTIVANDLKPERQKATVANMHRLGVKNVIACAH 377 Query: 297 DAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D K FD +L+DAPCS G I R P V R D+ + A Q++LLL I Sbjct: 378 DGRKMGVMFKNRFDRILLDAPCSGLGVISRDPSVKVQRTIADVNQCAHLQKELLLAAIDA 437 Query: 355 VKP----GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMAL 407 +K GG +V+S CS+ ++EEVV L I + L+ + + + Sbjct: 438 LKSKGTSGGFMVYSTCSVAVAENEEVVNYALSKRDIKIVDTGLDFGKPGFTRYMQKRFHS 497 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S R P + MDGFF +++L Sbjct: 498 SVALTRRFYPHV--------HNMDGFFVCKIQKL 523 >gi|3288669|dbj|BAA31227.1| Fmv [Vibrio alginolyticus] Length = 225 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 26/237 (10%) Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAK 265 P ++ LPGF +G VQDA+A + + + +LD CAAPGGKTA SG++ Sbjct: 8 APCDVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSE 67 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 V A+D RL+++ NL RL+L A + ++ + FD +L+DAPCS+TG IR Sbjct: 68 VVAIDCDDTRLKRVHENLKRLNLQAKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIR 127 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 RHPD+ W R DDI A Q ++ + +KPGG +V++ CS+ Q++ E V+ L Sbjct: 128 RHPDIKWLRRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLAR 187 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L + +I P MDGF+ L + Sbjct: 188 TADAQLLDSDPDQPGR--------------QILPG--------EEDMDGFYYAVLTK 222 >gi|152970898|ref|YP_001336007.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955747|gb|ABR77777.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 462 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L V G ++ + + S G++++Q+AS+ +PV Sbjct: 45 YGWQLAPVPWCAEGFWIEREDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNRQPE 104 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 105 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 164 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ D L + + A QR+L+ ++PG Sbjct: 165 FGAALPETFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++ V++ +L P VE++PL + + D AL+ EG++ + P Sbjct: 225 GTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFPGAAD---ALTAEGFLHVFPQ 281 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 282 IYDCE--------GFFVARLRKTA 297 >gi|238895411|ref|YP_002920146.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella pneumoniae NTUH-K2044] gi|330001320|ref|ZP_08303939.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS 92-3] gi|257096809|sp|A6TB06|RSMF_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|238547728|dbj|BAH64079.1| putative methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328537743|gb|EGF63946.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Klebsiella sp. MS 92-3] Length = 477 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L V G ++ + + S G++++Q+AS+ +PV Sbjct: 60 YGWQLAPVPWCAEGFWIEREDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNRQPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ D L + + A QR+L+ ++PG Sbjct: 180 FGAALPETFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++ V++ +L P VE++PL + + D AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFPGAAD---ALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|261327715|emb|CBH10692.1| nucleolar protein, putative [Trypanosoma brucei gambiense DAL972] Length = 579 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 26/314 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E+ + + + + +A P + V + A Sbjct: 204 YGYNEFLTDSILLLFSPTEAVEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEP 263 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A + +PV N VLD+ AAPGG Sbjct: 264 LEKWSKVGLQVFESNVPISGTVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGG 323 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310 KT + + + + A DVS+ R + L NL RL + + D + FD + Sbjct: 324 KTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKVMKNFDRI 383 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPC+ +G I R + ++ +D+ +++ QR LLL I V+ GG +V+S CS Sbjct: 384 LLDAPCTGSGIISRDKSIKTSKQYEDVQRASQLQRSLLLSAIDAVRVGGYIVYSTCSFLV 443 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVS 427 +++E VV VL + + L + R+ P + Sbjct: 444 EENEAVVDFVLHRRDVAIVEAGLPFGRPGLTKYRHHRFHDKLQNARRLFPHV-------- 495 Query: 428 SGMDGFFAVALRRL 441 MDGFF L++L Sbjct: 496 HNMDGFFVCKLKKL 509 >gi|331226503|ref|XP_003325921.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309304911|gb|EFP81502.1| Yna1p [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 601 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 28/257 (10%) Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 ++ E I + P + G + +Q AS+ +PV LD+ AAPGGKT + + Sbjct: 229 QVFESSVPIGATPEYLAGHYMLQAASSFLPVIALDPQPGEKCLDMSAAPGGKTTFMSAMM 288 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 + K+ A D SK R + L N+ R+ + I DA D+ F+ VL+DAPCS T Sbjct: 289 KNTGKLFANDSSKARCKSLMANVSRMGCHNVIISNHDARDFPKVMGGFNRVLLDAPCSGT 348 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVFSNCSLDKQDSEE 375 G I + V + D++ + Q++L+L I V P GG +V+S CS+ +++E Sbjct: 349 GVISKDASVKNNKSEKDLLLLSHLQKQLILSAIDSVSPHSTNGGYLVYSTCSVTVEENES 408 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT-----PD--MLEKIDGVSS 428 VV L+ P K ++ + EG++R P M + Sbjct: 409 VVDYALKKRPN-----------VKLVETGIGFGKEGFVRFRGKIFNPSLKMTRRFYPHVH 457 Query: 429 GMDGFFAVALRRLIQPK 445 +DGFF L+ + PK Sbjct: 458 NVDGFFVAKLK--VNPK 472 >gi|160874533|ref|YP_001553849.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS195] gi|160860055|gb|ABX48589.1| Fmu (Sun) domain protein [Shewanella baltica OS195] Length = 453 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 153/449 (34%), Gaps = 50/449 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 32 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRLGDQ--- 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 ++ L S +L + + E ++ + + L L Sbjct: 87 ----QESAVYFASLSASA--LLEAHT-WQDIANAWHELSQTPIDYQQAQALAVESLDDKL 139 Query: 133 REKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLT--VKFDIET 188 L + +P+WF + ++ L + +C P++ D T Sbjct: 140 ALIQYLFPATEFKAQDLLPDWFWQVCPVDAAQQTQLIAAMSCRPPIWGRAQGITSQDAAT 199 Query: 189 WAHKLNAVMLPTGGI----RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L L ++ + + +G +QD ++ + Q+ + Sbjct: 200 QLQALGIEASYGHYFSDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAH 259 Query: 245 VLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 D C+ GGKT +S + + D+ LE+L R + Sbjct: 260 WWDACSGAGGKTLQLRSLMLAKAADNQTLSAGSIISSDIRSNALEELTKRAQRANFNGIS 319 Query: 293 IIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 320 VARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRS 379 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 VK GGI+V++ CSL ++++VV L+ P L P+ + Sbjct: 380 SRAVKAGGILVYATCSLSPIENQDVVTAFLQQHP-EFTLTPIRHPFSGEQTE-------- 430 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 431 MLTVLP--------FEANSDGMFVARMLR 451 >gi|114047702|ref|YP_738252.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-7] gi|113889144|gb|ABI43195.1| Fmu (Sun) domain protein [Shewanella sp. MR-7] Length = 404 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 82/448 (18%), Positives = 143/448 (31%), Gaps = 72/448 (16%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + LR L Sbjct: 12 ELVISILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARIATVTGDILRRLNLYCF--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + +LL V + + L++ + Sbjct: 66 -LAEIKPEEMERLGSKLLNV--WHLFHKLELPKMQ-------------------YSLPVD 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 R++ + + PEW + G A +P L V Sbjct: 104 ADRLAERIEQAQNQPVLWDGCPEWLDTMGQAQLGTSW-EKERAALSTPPKRFLRVNGLKV 162 Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + A KL A + T + + ++ F +G++ QDA + Sbjct: 163 SRDELAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTDCFKDGLFEQQDAGSQRVAAALD 222 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294 + V+D CA GGKT + ++ A+DV + +L+ L+ R + + Sbjct: 223 AKPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRL 282 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 283 IVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSR 342 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GGIVV++ CS+ ++ V L +P L Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED--------------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I SG DGF+ L R+ Sbjct: 382 -------ETISPADSGFDGFYLAKLERI 402 >gi|303326115|ref|ZP_07356558.1| sun protein [Desulfovibrio sp. 3_1_syn3] gi|302864031|gb|EFL86962.1| sun protein [Desulfovibrio sp. 3_1_syn3] Length = 464 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 90/414 (21%), Positives = 149/414 (35%), Gaps = 45/414 (10%) Query: 20 RKRISLTCLLDLEYGDSAFRL------LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +S L L Q+++ L +V LR RI +L VL Sbjct: 30 DSGLSAQEALADALSGPLGEGGKAVAVLPQQERHLCSELVYGCLRAEIRIAYLLGRVLPK 89 Query: 74 SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 R L+ +L ++V +L+ V D+A V AV QA+R R A++ N LR + Sbjct: 90 P-ERLPLPLRHILELAVYALLFQERVPDHAAVHSAVAQAERLFG-RSLARVTNGALRSIQ 147 Query: 133 REKI-----------------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 R + + +P W + + YG+E L + + Sbjct: 148 RFGTAVDTREFYVVGKEGALADEWGGLCRYYSLPRWLGDLWHDAYGREAALCLMRRSFAR 207 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPESIVSLPGF-----------A 219 + + V E L + + + LP + Sbjct: 208 PWSGVRVNARHEAAEELLAGLRHCAKEGCGEAVGRWGVAFAPGELPAHVLGQSLSLWRAS 267 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEK 278 + S L + V D CA GGK+ L+ G VT D S RL Sbjct: 268 GALSLQSAGSQLAVQALELDCWDAPVWDACAGFGGKSFALLEQGIDVTLCTDRSWSRLRH 327 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW--TRDTDD 336 L LHL + DA + +L+DAPCS G + R PD+ R D Sbjct: 328 LPGVCRELHLPRPAVCLADACAPPLRGWNGHILLDAPCSGLGVLARRPDIRKDSRRTPAD 387 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + + A Q ++LL+ + ++ G + + C+L+ ++E V ++L + + L Sbjct: 388 LKQLAALQDRMLLRLSALLQQGRELAYITCTLNPTENELAVARLLAARSELMLL 441 >gi|319425708|gb|ADV53782.1| Fmu (Sun) domain protein [Shewanella putrefaciens 200] Length = 463 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 77/447 (17%), Positives = 155/447 (34%), Gaps = 46/447 (10%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 L + ++ +L + + +D+ ++R + R+ + + Sbjct: 42 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRIGEQQAS 99 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 ++ S LL Q D A + Q+ D + + + + Sbjct: 100 ATYFA-NLSASALLEAHAWQ-------DIATAWHELSQSPIDYQLAQALAVDSLDDKLTL 151 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 + + ++ ++P+WF + ++ L + P++ + Sbjct: 152 MQHLFPAAKLKPQDLLPDWFWQVCPVDAAQQTQLIEVMSSRPPIWGRAQGITSQDAATQL 211 Query: 193 LNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + + G + ++ + + +G +QD ++ + Q+ + Sbjct: 212 QALDIDASYGHYFNDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAHWW 271 Query: 247 DLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 D C+ GGKT S + + D+ LE+L R H + Sbjct: 272 DACSGAGGKTLQLRSLMLAKAADNQTPSAGSIISSDIRSNALEELTKRAQRAHFNNISVA 331 Query: 295 EMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 332 RWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGVEAVADKAALQLDILSRSSR 391 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GG++V++ CSL ++++VV L+ P L P+ + + Sbjct: 392 AVKAGGVLVYATCSLSPLENQDVVTAFLQQHP-EFMLTPIRHPFTGEQTE--------ML 442 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + DG F + R Sbjct: 443 TVWP--------FEANSDGMFVARMLR 461 >gi|170726563|ref|YP_001760589.1| Fmu (Sun) domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811910|gb|ACA86494.1| Fmu (Sun) domain protein [Shewanella woodyi ATCC 51908] Length = 404 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 78/449 (17%), Positives = 139/449 (30%), Gaps = 70/449 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L V+ + L + + L +Q + +V LR L Sbjct: 12 ELVISILDMVLSEGKPLDRAYSVHFS---GLQLIPSEQARITKVVGDILRRLNLYCF--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + ++ + + L++ + Sbjct: 66 -LSDVKPEEISR--LGSRLMNAWHLFHELELP-------------------KLQYSLPLA 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFD 185 E + A PEW + G+ + P +K Sbjct: 104 EAEYFARLEEAKLQPALWDGCPEWLDTMGQAQLGEAWAKERAALNTQPKRFIRTNILKCT 163 Query: 186 IETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E A KL + T ++ F +G + QDA + + Sbjct: 164 REELAKKLRNEQVQTTEVDGVDTALEVVSDSALFRTESFKKGWFEQQDAGSQLVAAAVDA 223 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DII 294 + V+D CA GGK A + ++ A+DV + +L+ L+ R + II Sbjct: 224 KPGMRVIDACAGAGGKTLSIAAQMKGKGRLLAMDVEQWKLDNLKQRARRANASNVETRII 283 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D +L+D PCS G ++R+PD W D + Q+ +L Sbjct: 284 ASSKTIKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTPDRLPVLVELQKHILQSYSRM 343 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GGI++++ CS+ +++ + V L + L Sbjct: 344 VKVGGILIYATCSIMPEENRDQVDAFLAENEHFTFLED---------------------- 381 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E I SG DGF+ L R+ + Sbjct: 382 ------ETISVADSGFDGFYMARLERIAE 404 >gi|197120707|ref|YP_002132658.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K] gi|196170556|gb|ACG71529.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K] Length = 436 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 104/451 (23%), Positives = 160/451 (35%), Gaps = 50/451 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + V + L+ L ++ V V LR ++D +L Sbjct: 18 ALVLEVHGLVHDQGWLADRALERVLRRER--ALWANERRAVAEAVYGILRAQGQLDFLLG 75 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 S P L+R A V A A+ R A L + Sbjct: 76 ----GSPPLATRYAAWLVR-------------SAGVAPAQAAARLGAAPRALAGLAEADA 118 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK----- 183 R + L R A + +P W ERL + G+ A++ + + Sbjct: 119 R--IAAIPDPLDRFAVEASLPRWIAERLVSELGEAEARALAAVLNRRAPLTVRANALAGD 176 Query: 184 ---FDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 A + A L + ++ +L F G + +QD + + G Sbjct: 177 REALRAALAAEGVPAEPTHFSPWGLTLDGHQNAFALEAFRTGGFEIQDEGSQLIALACGA 236 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--- 293 V+D CA GGK A + + + ALD RLE R R H++ Sbjct: 237 RPGQVVVDACAGAGGKSLALAAEMHNKGSLHALDSDAGRLEDARRRARRAHVHNLRTRVV 296 Query: 294 ---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 E +A D VLVDAPCS GT+RR PD W D + A QR+LL + Sbjct: 297 PAGPEAEAAVADLAGKADVVLVDAPCSGLGTLRRKPDARWRLQPGDPERFAAIQRELLGR 356 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +PGG VV++ C++ + +++E V + L P A + + A AL Sbjct: 357 FARLARPGGRVVYATCAMGRTENDE-VADFAER---ELGLAPAPLAPFLGAERARALGA- 411 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G R + G DGFF A R++ Sbjct: 412 GESRC------ALYPHRHGTDGFFFAAFRKV 436 >gi|72388220|ref|XP_844534.1| nucleolar protein [Trypanosoma brucei TREU927] gi|62359769|gb|AAX80199.1| nucleolar protein, putative [Trypanosoma brucei] gi|70801067|gb|AAZ10975.1| nucleolar protein, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 525 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 125/314 (39%), Gaps = 26/314 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E+ + + + + +A P + V + A Sbjct: 150 YGYNEFLTDSILLLFSPTEAVEFFEAMEKPRPTTIRVNTIKAKRRDLVQALVKRGMNVEP 209 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A + +PV N VLD+ AAPGG Sbjct: 210 LEKWSKVGLQVFESNVPISGTVEYLAGHYMLQSAVSFLPVMALAPQINERVLDMAAAPGG 269 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310 KT + + + + A DVS+ R + L NL RL + + D + FD + Sbjct: 270 KTTYIAQLMKNTGVIFANDVSEPRTKSLNANLQRLGVTNTVVTNYDGVGFEKVMKNFDRI 329 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPC+ +G I R + ++ +D+ +++ QR LLL I V+ GG +V+S CS Sbjct: 330 LLDAPCTGSGIISRDKSIKTSKQYEDVQRASQLQRSLLLSAIDAVRVGGYIVYSTCSFLV 389 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVS 427 +++E VV VL + + L + R+ P + Sbjct: 390 EENEAVVDFVLHRRDVAIVETGLPFGRPGLTKYRHHRFHDKLQNARRLFPHV-------- 441 Query: 428 SGMDGFFAVALRRL 441 MDGFF L++L Sbjct: 442 HNMDGFFVCKLKKL 455 >gi|22328952|ref|NP_194390.2| nucleolar protein, putative [Arabidopsis thaliana] gi|17979390|gb|AAL49920.1| unknown protein [Arabidopsis thaliana] gi|22136852|gb|AAM91770.1| unknown protein [Arabidopsis thaliana] gi|332659825|gb|AEE85225.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] Length = 671 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 19/249 (7%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + I + P + G + +Q AS+ +PV V+D+ AAPGGKT + + Sbjct: 306 VYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMK 365 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSS 318 + + A ++ RL+ L NL R+ + + D + + D VL+DAPCS Sbjct: 366 NTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRELTKVLGQSSVDRVLLDAPCSG 425 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374 TG I + V ++ DDI K A Q++L+L I V K GG +V+S CS+ ++E Sbjct: 426 TGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPENE 485 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDG 432 V+ L++ V+LVP + + S R P + + MDG Sbjct: 486 AVIDYALKNR--DVKLVPCGLDFGRP-----GFSSFREHRFHPSLEKTRRFYPHVHNMDG 538 Query: 433 FFAVALRRL 441 FF L+++ Sbjct: 539 FFVAKLKKM 547 >gi|300121088|emb|CBK21470.2| unnamed protein product [Blastocystis hominis] Length = 690 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 127/333 (38%), Gaps = 28/333 (8%) Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DI 186 L A E + + + DA S + + Sbjct: 156 SREEYMDRLRSYCARFYGYNPNLVEYFFYMFSPQECVEWFDANESDRPLVIRTNTLKTRR 215 Query: 187 ETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 A L + + ++ + P I + P + G + +Q AS+ +PV Sbjct: 216 RDLAQVLINRGINLDPLGEWSRLGLKIYDTPVPIGATPEYLAGHYMLQSASSMLPVMALN 275 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 N +LD+CAAPGGKT + + + + A D+ K RL NL RL + + Sbjct: 276 PQPNERILDMCAAPGGKTTHIAQLMKNTGVLVANDLKKERLIATVANLHRLGVTNTIVTN 335 Query: 296 MDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + FD VL+DAPC+ G I R P V +R D+V++A Q+ L+L I Sbjct: 336 YHGCKFPKVMGGFDRVLLDAPCTGLGVISRDPSVKMSRTVKDMVQNAFVQKLLILAAIDS 395 Query: 355 V----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + K GG++V+S CS+ ++E VV LR + + L + Sbjct: 396 IDANSKSGGVLVYSTCSVSVYENEAVVNYALRKRHVKLVDTGLTFGTP-------GFTSF 448 Query: 411 GWIRITP--DMLEKIDGVSSGMDGFFAVALRRL 441 + P M + MDGFF L +L Sbjct: 449 RQFKYHPSMSMTRRYYPHVHNMDGFFVAKLVKL 481 >gi|182415654|ref|YP_001820720.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1] gi|177842868|gb|ACB77120.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1] Length = 451 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 160/444 (36%), Gaps = 75/444 (16%) Query: 39 RLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV 98 R RD+ L R ++ TLR+LP I+ P + +Q +R+ I +L Sbjct: 40 RRFGSRDRRLYRELIYTTLRYLPWIE-----------PELERDAEQAVRL----IAWLAA 84 Query: 99 ADYAVVDLAVEQAKRDK-ENRHFAKLVNSILRR-VSREKIELLQRIAGISIIPEWFKERL 156 A E A+ + +R + + R A +++P WF E Sbjct: 85 DAPATAHFRHELIGEWPPCPAPLAEKAAMLAQRVGAADTAAGAGRFAPEALLPRWFHEHC 144 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----S 211 + + ++ + +PL++ L A L + Sbjct: 145 ADAFAPVQLDPL--LARAPLWLRLQTDEPRSVTAEFEQLGWTACSSAVLPGALQLLDEVD 202 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTA 268 + F G+ VQD + + + LD CA GGKT QL G V A Sbjct: 203 VTRTDAFQNGLIEVQDLGSQLLLAAAQVAAGGHWLDACAGAGGKTLQLAALLGPGGTVDA 262 Query: 269 LDVSKRRLEKLRCNLDRLHLY------------AEDIIEMDAFDYC-------------- 302 DV + L++L R + I Sbjct: 263 HDVRRAALDELALRARRAGIPLTRSSSRSDVGRDIPIPAGAPVSDRSSPRAAPKRPAATV 322 Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 P+ L+D VLVDAPCS +GT RR P + WT I ++A QR+LL Q V+ Sbjct: 323 RILSTIPETLYDGVLVDAPCSGSGTWRRAPHLKWTTTPAHIDQAAGRQRELLEQFAQRVR 382 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG ++++ CSL ++++++VV L S P A + G + + Sbjct: 383 PGGRLIYATCSLSRRENQDVVAGFLASRPEFA-------AEPPPATFGAPVDAFG-LTLL 434 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + DGFF +RR Sbjct: 435 PGL--------HNTDGFFVACMRR 450 >gi|256823370|ref|YP_003147333.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Kangiella koreensis DSM 16069] gi|256796909|gb|ACV27565.1| RNA methylase, NOL1/NOP2/sun family [Kangiella koreensis DSM 16069] Length = 479 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 132/274 (48%), Gaps = 22/274 (8%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVS----LPGFAEGVWWVQDASASIPVQLF 237 V + + +KL+ + G + E + + L G +++Q++S+ +PV Sbjct: 49 VVNEWQQAGYKLDPIPWCDDGFWIDETYKPLADGFGKLLPHLAGQFYIQESSSMLPVSAL 108 Query: 238 GTLNNL--SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + VLD+ AAPG KT Q+ + + V A ++S RL+ L NL+R + Sbjct: 109 FAAHPDPTMVLDVAAAPGSKTTQISAAMNNDGLVVANELSSSRLKVLYANLERTGVSNTI 168 Query: 293 IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D + FDA+L+DAPC GT+R+ P+ L ++ + Q++L++ Sbjct: 169 LCHHDGRQFGEATKQTFDAILLDAPCGGEGTVRKDPEALSNWSLASVLSISELQKELIMS 228 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + +KPGG +V+S C+L K++++ V Q +L + VE+ PLN+ + +PE Sbjct: 229 AFNALKPGGTLVYSTCTLSKEENQLVCQHLLDTHSNSVEIFPLNALF---AGADKVATPE 285 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 G++ + P + + GFF ++ P Sbjct: 286 GYLHLYPHLFDSE--------GFFVACFKKKPTP 311 >gi|332524650|ref|ZP_08400849.1| Sun protein [Rubrivivax benzoatilyticus JA2] gi|332107958|gb|EGJ09182.1| Sun protein [Rubrivivax benzoatilyticus JA2] Length = 436 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 117/455 (25%), Positives = 177/455 (38%), Gaps = 56/455 (12%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + + V R+ SLT +L + + V+A+ +R+L + Sbjct: 11 ADAVHAV-RQGRSLTDVLAR---------VPPDARPGVQALSFHVMRWLGSAGEARALMA 60 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA--KRDKENRHFAKLVNSILR 129 S P ++ LL ++A + V+QA + A +N++LR Sbjct: 61 PKSPP---PHVESLLLTALALLWPTGEPSPYADHTLVDQAVHAAHQRTPVAAGFINAVLR 117 Query: 130 RVSREKIELLQRIAGIS----IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 R RE+ +L P W+ ER+ + + + A+ A L V Sbjct: 118 RFVRERDKLAAAARHQPLGAFNHPLWWIERVRHDWPTQW-QALLQASNVHPPFTLRVNRR 176 Query: 186 I---ETWAHKLNAVMLPT---------GGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 E + +L A G + P + LPGFAEG VQDA+A Sbjct: 177 RGSGEAYVQRLAAQGRAATLVDDAALGGQAVVLAEPCPVTQLPGFAEGEVSVQDAAAQRA 236 Query: 234 VQ---LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289 G VLD CAAPGGKT L+ ALD RL +++ NL+RL L Sbjct: 237 APLLVGDGLPAGARVLDACAAPGGKTGHLLELADLDVLALDSDPVRLARVQENLNRLQLQ 296 Query: 290 AEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 A D + + FDA+L+DAPCS+ G +RRHPDV W R DDI A Q ++ Sbjct: 297 ATLRAGDARDTARWWDGRPFDAILLDAPCSAAGIVRRHPDVRWLRRPDDITALARLQGEI 356 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSA-YWKSIDMAM 405 L + PGG +V++ CSL + + E + L+ L PL+ D Sbjct: 357 LDALWPLLAPGGRLVYATCSLFRSEGAEQIDAFLQRHADSGASLDPLSPGHLLPLADNPS 416 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S + DGF+ + + Sbjct: 417 QPSARQAL----------------HDGFYYALVHK 435 >gi|322823742|gb|EFZ29411.1| nucleolar protein, putative [Trypanosoma cruzi] Length = 538 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 122/298 (40%), Gaps = 10/298 (3%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 P K R I + DL V+ ++ H G+++ E Sbjct: 176 FPPAEAVEFFEAMEKPRPTTIRVNTLKAKRRDL-VQALLKRGMHVEPLEKWSKVGLQVFE 234 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGA 264 I + G + +Q A + +PV VLD+ AAPGGKT + + + Sbjct: 235 SNVPIAGTVEYLAGQYMLQSAVSFLPVMALAPQEKERVLDMAAAPGGKTTYIAQLMKNTG 294 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIR 323 + A D+S+ R + L NL RL + + D Y FD VL+DAPC+ +G I Sbjct: 295 VLFANDMSEPRTKALNANLQRLGVTNTVVTNYDGAGYNKIMKNFDRVLLDAPCTGSGIIS 354 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R + ++ +D+ +++ QR LLL I VK GG VV+S CS +++E VV+ +R Sbjct: 355 RDKSIKSSKHYEDVQRASQQQRTLLLSAIDAVKVGGYVVYSTCSFLVEENEAVVEFAVRR 414 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + L E + MDGFF L++L Sbjct: 415 RHVEIVEMGLPFGRPGLTKYRHHRFHEKM-----QCSRRFFPHVHNMDGFFVCKLKKL 467 >gi|115378451|ref|ZP_01465611.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca DW4/3-1] gi|115364557|gb|EAU63632.1| tRNA and rRNA cytosine-C5-methylase [Stigmatella aurantiaca DW4/3-1] Length = 448 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 93/458 (20%), Positives = 164/458 (35%), Gaps = 40/458 (8%) Query: 4 GMNARLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G +R ++ + + + L L ++ L +++ V R Sbjct: 7 GRPSRRAATAAIEAHVAVLRGEPLKASLATALREAE--GLGGQERRFAALAVRELSRHQR 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL---AVEQAKRDKENR 118 +DA + Q L+R ++ + ++ + R ++ Sbjct: 65 LLDAAARALGHPPGKVGLTEDQALVRYALWRRIFCGEGWARIGPEVRLPGPVRPRTIKDD 124 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-- 176 A +V L + + + A P W ERL + + A+ A Sbjct: 125 LLAGVVEKPLPDMPLPESATERL-AMRYSFPTWLVERLAALHTPPILEALLAALDEEPAL 183 Query: 177 YIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + +L AV L +R+ + + G VQD Sbjct: 184 HFRVRPSGTRDEVLARLTEEGVAAEAVALAPDAVRIADSSHRVFETRAMKTGRLQVQDVG 243 Query: 230 ASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282 + + ++ +V D+CA GGKT L +V A D S+RRL + Sbjct: 244 SQLIAEVCRPPGGSLEGRTVADVCAGAGGKTLALADMVGSAGRVLAGDRSRRRLAQA--- 300 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + + P D +LVDAPCS TG++ R PD W I + Sbjct: 301 --RERVRELSVRNVAFPHPLPLSEADVLLVDAPCSGTGSLGREPDQKWKLTAKAISEFQA 358 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q LL + +PG ++V++ CSL ++++EVV+ L +P L P+ + Sbjct: 359 TQLTLLEEVGREARPGALIVYATCSLLPEENDEVVRGFLAKAPG-FTLEPVAPVL--GAE 415 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A AL ++R P + GFFA LR+ Sbjct: 416 RAEALCDGPFLRPIPPRVPGG--------GFFAARLRK 445 >gi|288934704|ref|YP_003438763.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22] gi|288889413|gb|ADC57731.1| RNA methylase, NOL1/NOP2/sun family [Klebsiella variicola At-22] Length = 477 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243 + +L V G ++ + + S G++++Q+AS+ +PV N Sbjct: 60 YGWQLTPVPWCEEGFWIERDGDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNPQPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ D L + + A QR+L+ ++PG Sbjct: 180 FGAALPETFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++ VVQ +L P VE++PL + + D AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGDLFSGAAD---ALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|110636611|ref|YP_676818.1| tRNA/rRNA cytosine-C5-methylase [Cytophaga hutchinsonii ATCC 33406] gi|110279292|gb|ABG57478.1| tRNA/rRNA cytosine-C5-methylase (sun family protein) [Cytophaga hutchinsonii ATCC 33406] Length = 416 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 79/457 (17%), Positives = 149/457 (32%), Gaps = 75/457 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N L + ++ + RD+ + + + +R+ Sbjct: 19 MKLHPNNIQSIIQALKKIFLDGAYADDVVRNLLQSNPKWG--SRDRRFIASSIYSIVRWW 76 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD---VADYAVVDLAVEQAKRDKEN 117 R + D + L L+ Y D ++ + ++ Sbjct: 77 KRYVFIADT-TKKDSDCFEKVLSAYLKE-----TYGDGLLTPLPVELNEEIFASRIKAAT 130 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 A + IP+W GKE Sbjct: 131 AD----------------------RAVQASIPDWMDALGVKELGKELWERELHFSNLEAD 168 Query: 178 IDLTVK---FDIETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDA 228 + + V +LNA + + + L + G + +QD+ Sbjct: 169 VFIRVNTLKHTSAEIIKQLNAEGIEATQFGPYPETLKLAERKPLQRLHSYLNGGYEIQDS 228 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDR 285 + + N V+D CA GGKT L+ + K+ ++D+ +L++L +R Sbjct: 229 GSQVIAHYLKPSPNAFVIDACAGAGGKTLHLSALMGNKGKIVSMDIEAFKLKELERRAER 288 Query: 286 LHLYAEDIIEM-DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + K D +L+D PCS G +RR+PD W + I + Q Sbjct: 289 AGTTIIQTKVIREGVITSLKNKADYLLLDVPCSGIGVLRRNPDDKWKLSAERIQELTQIQ 348 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +++L + S VKPGG++V++ CS+ +++ +++ L+S+ Sbjct: 349 QQILQEYSSMVKPGGVLVYATCSILPIENDNQIEQFLKSN-------------------- 388 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I P S G DG+F L + Sbjct: 389 TGFQLEKKQTIYP---------SEGGDGYFMARLIKK 416 >gi|323335828|gb|EGA77107.1| Nop2p [Saccharomyces cerevisiae Vin13] Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|323331975|gb|EGA73387.1| Nop2p [Saccharomyces cerevisiae AWRI796] Length = 485 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 74 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 133 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 134 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 193 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 194 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 253 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 254 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 313 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 314 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 367 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 368 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 404 >gi|323307446|gb|EGA60720.1| Nop2p [Saccharomyces cerevisiae FostersO] Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|259149299|emb|CAY82541.1| Nop2p [Saccharomyces cerevisiae EC1118] Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|256273278|gb|EEU08219.1| Nop2p [Saccharomyces cerevisiae JAY291] Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|151944473|gb|EDN62751.1| nucleolar protein [Saccharomyces cerevisiae YJM789] Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|51013571|gb|AAT93079.1| YNL061W [Saccharomyces cerevisiae] Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|603587|emb|CAA58502.1| Yna1p [Saccharomyces cerevisiae] Length = 473 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 74 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 133 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 134 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 193 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 194 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 253 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 254 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 313 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 314 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 367 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 368 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 404 >gi|6324268|ref|NP_014338.1| Nop2p [Saccharomyces cerevisiae S288c] gi|730166|sp|P40991|NOP2_YEAST RecName: Full=Putative ribosomal RNA methyltransferase Nop2; AltName: Full=Nucleolar protein 2 gi|576442|emb|CAA57979.1| Nop2p [Saccharomyces cerevisiae] gi|1098483|gb|AAA99650.1| Ynl2428p [Saccharomyces cerevisiae] gi|1301934|emb|CAA95934.1| NOP2 [Saccharomyces cerevisiae] gi|190409050|gb|EDV12315.1| nucleolar protein NOP2 [Saccharomyces cerevisiae RM11-1a] gi|207341676|gb|EDZ69664.1| YNL061Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi|285814591|tpg|DAA10485.1| TPA: Nop2p [Saccharomyces cerevisiae S288c] gi|1093321|prf||2103264A nuclear protein Length = 618 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 135/337 (40%), Gaps = 27/337 (8%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ ++ E V+ LR P V+LV A K A Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPN-VKLVDTGLAIGK-----EA 512 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + + P + + + +DGFF +++ Sbjct: 513 FTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKI 549 >gi|71030964|ref|XP_765124.1| nuclear protein [Theileria parva strain Muguga] gi|68352080|gb|EAN32841.1| nuclear protein, putative [Theileria parva] Length = 428 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 129/315 (40%), Gaps = 25/315 (7%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM---- 197 E + + + DA PL + + + A L Sbjct: 106 YYGYSEELSDYFFKLFNPLEAIQFFDANEQPLPLTIRTNTLKTKRKDLAVSLINRGANVD 165 Query: 198 ----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 G+ + I + P + G + +Q AS+ IPV N VLD+CAAPG Sbjct: 166 PIGDWTKEGLVVHSSKVPIGATPEYLAGHYILQSASSLIPVLSLAPRPNELVLDMCAAPG 225 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDA 309 GKT + + + + A D +K R + L N+ RL + + + D Sbjct: 226 GKTTHIGQLMNNTGILFANDSNKSRCKSLVSNIHRLGILNSIVCNYKGDELVRVLPKMDR 285 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G I R P + R D+ +++ Q++LL I+ VKP GI+V+S CSL Sbjct: 286 ILLDAPCSGLGVISRDPSIKVKRGLKDLQRNSNLQKQLLTASINLVKPNGIIVYSTCSLS 345 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM---LEKIDGV 426 +++E+V+ +R V+LVPL A S + P + + Sbjct: 346 IEENEQVIHYAIRKF--NVKLVPLGLEIGTP-----AFSSFRGRKFHPSIAKFARRFYPH 398 Query: 427 SSGMDGFFAVALRRL 441 +DGFF L +L Sbjct: 399 KHSLDGFFVAKLIKL 413 >gi|209881801|ref|XP_002142338.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66] gi|209557944|gb|EEA07989.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66] Length = 539 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 29/318 (9%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDL---TVKFDIETWAHKLNAVMLPTGG 202 E L N + + + DA + + + +K AHKL + Sbjct: 121 YGYNVELAEYLLNLFSPKEAIEFFDANENQRPLTIRTNMLKTRRRDLAHKLISRGANVDP 180 Query: 203 IRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 I I + P + G + +Q AS+ IPV +LD+ AAPGG Sbjct: 181 IGEWTKVGLIVYSSSVPIGATPEYLSGYYMIQSASSLIPVMALAPQPGEKILDMAAAPGG 240 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAV 310 KT + + + + A D+ + R L NL R+ + +I MD + D + Sbjct: 241 KTTYIGQLMKNSGILYANDLRRDRCTALIANLHRMGICNSVVINMDGKELGKYLPKLDRI 300 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNC 366 L+DAPC+ G I R P V R ++ + + Q++LL I + K GG VV+S C Sbjct: 301 LLDAPCTGLGIISRDPSVKVKRTIKELNEYSLLQKELLKSAIDMIDANSKTGGFVVYSTC 360 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD---MLEKI 423 S+ +++E VV +L+ + + + + R+ P +I Sbjct: 361 SISFEENEAVVDYILKVRNVKLVPLGIEIGSPGLSKFREN-------RLNPTISKYSRRI 413 Query: 424 DGVSSGMDGFFAVALRRL 441 + MDGFF +++ Sbjct: 414 YPHKNNMDGFFVAKFKKI 431 >gi|290508835|ref|ZP_06548206.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp. 1_1_55] gi|289778229|gb|EFD86226.1| ribosomal RNA small subunit methyltransferase F [Klebsiella sp. 1_1_55] Length = 477 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243 + +L V G ++ + + S G++++Q+AS+ +PV N Sbjct: 60 YGWQLTPVPWCEEGFWIERDGDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNPQPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ D L + + A QR+L+ ++PG Sbjct: 180 FGAALPEAFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++ VVQ +L P VE++PL + + D AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGDLFSGAAD---ALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|11498459|ref|NP_069687.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus fulgidus DSM 4304] gi|2649749|gb|AAB90385.1| proliferating-cell nucleolar antigen P120, putative [Archaeoglobus fulgidus DSM 4304] Length = 317 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 16/261 (6%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 +L +P + +P G+ + Q+A++ IP + ++VLD Sbjct: 64 ENLKELITGRVPWCEEGFYLSIDEFSRIPEHQLGLIFSQEAASMIPPLVMELEPKMTVLD 123 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CP 303 + A+PG KT Q + + + A DV R+ L NL R + + D + Sbjct: 124 IAASPGAKTTQIAQYLQNEGCIVANDVKHSRINILISNLQRCGVLIAKVTVKDGRYFGRF 183 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVLVDAPCS+ G IR++ + D + Q+ LL+ VKPGG+VV+ Sbjct: 184 RNRFDAVLVDAPCSNMGMIRKNYRNIRLWKMRDCYGLSKLQKSLLMAAYKAVKPGGVVVY 243 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE--GWIRITPDM 419 S C+L+ ++EEVV +LR++ +E V P+ + S E +R+ P Sbjct: 244 STCTLEPIENEEVVDYILRNTDAEIEEVNLPVKGVEPFTKFDGKEYSEEVRKCLRLHPQ- 302 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 SS +GFF LR+ Sbjct: 303 -------SSDTEGFFVAKLRK 316 >gi|255718325|ref|XP_002555443.1| KLTH0G09460p [Lachancea thermotolerans] gi|238936827|emb|CAR25006.1| KLTH0G09460p [Lachancea thermotolerans] Length = 637 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 86/338 (25%), Positives = 139/338 (41%), Gaps = 27/338 (7%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK-- 183 + R S LL+ I ++ E+L N + L +A + + Sbjct: 230 AEGRSRSEYVDRLLKDICEYFGYSQFLAEKLFNLFSPTEALEFFEANEVSRPVTIRTNSL 289 Query: 184 -FDIETWAHKL--------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 A L G+++ + I + P + G + +Q AS+ +PV Sbjct: 290 KTRRRDLAQTLVNRGVNLKPIGPWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 349 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 350 VALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNT 409 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 410 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIAKDQSVKVSRTDKDFMQIPHLQKQLLLS 469 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG++V+S CS+ +++E VV LR P V+LV A K A Sbjct: 470 AIDSVDANSKTGGVIVYSTCSVAVEENEAVVDYALRKRPN-VKLVDAGLAIGK-----EA 523 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRLI 442 + P + + +DGFF +++ Sbjct: 524 FVSYRGKKFHPSVKLARRYYPHVYNVDGFFVAKFQKIA 561 >gi|325845413|ref|ZP_08168708.1| NOL1/NOP2/sun family protein [Turicibacter sp. HGF1] gi|325488563|gb|EGC90977.1| NOL1/NOP2/sun family protein [Turicibacter sp. HGF1] Length = 464 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 119/312 (38%), Gaps = 24/312 (7%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDA-CISPLYIDLTVKFDIETWAHKLNAVM----LP 199 + +P+ F ++++ G+E I + L + + N + Sbjct: 9 MMSLPQDFLDKMQQLLGEEFDEFIKSYDHEKSHGLRLNLLKTSMESFKEKNKLTLDSIPW 68 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258 + E P GV+++Q+ SA VLDLCAAPGGK+ Sbjct: 69 VEEGFFYKGEERPGKHPYHEAGVYYIQEPSAMSVGAFVEAKPGEKVLDLCAAPGGKSTHV 128 Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314 + + A ++ +R + L N++R+ + ++ FD ++VDA Sbjct: 129 ASQLGQKGLLVANEIYPQRAKILSQNIERMGVKNAIVLNETPARLAKHFPLYFDRIVVDA 188 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ +++ A Q ++L + +KPGG +V+S C+ +++E Sbjct: 189 PCSGEGMFRKDVVAQEEWSLENVKLCAARQNEILEEAAKMLKPGGRLVYSTCTFAPEENE 248 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVSSG 429 + + + + P E+ +N+ E R+ P + Sbjct: 249 QAIAQFISHHP-EFEIESINAYESFKPGRGEWSQIAVEGIEKTYRLWPHYI--------N 299 Query: 430 MDGFFAVALRRL 441 +G + LR++ Sbjct: 300 GEGHYLAVLRKV 311 >gi|206579412|ref|YP_002237778.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae 342] gi|226725340|sp|B5XQ35|RSMF_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|206568470|gb|ACI10246.1| NOL1/NOP2/sun family protein [Klebsiella pneumoniae 342] Length = 477 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243 + +L V G ++ + + S G++++Q+AS+ +PV N Sbjct: 60 YGWQLTPVPWCEEGFWIERDGDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNPQPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ D L + + A QR+L+ ++PG Sbjct: 180 FGAALPEAFDAILLDAPCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++ VVQ +L P VE++PL + + D AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENQSVVQWLLSRYPQAVEILPLGDLFSGAAD---ALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|50425343|ref|XP_461265.1| DEHA2F21054p [Debaryomyces hansenii CBS767] gi|49656934|emb|CAG89654.1| DEHA2F21054p [Debaryomyces hansenii] Length = 611 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 128/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ ++L N + + +A I + A L + Sbjct: 234 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVN 293 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 294 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAA 353 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT ++ + V A D +K R + L N+ RL + DA ++ F Sbjct: 354 PGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 413 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D +L+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 414 DRILLDAPCSGTGVIAKDETVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSATGGVIVY 473 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E VV LR P V+LV K + +P + Sbjct: 474 STCSVAVEENESVVDYALRKRPN-VKLVDAGLQIGK-----EGFTSYRGKHFSPSISLTR 527 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 528 RYYPHTYNVDGFYVAKFKKIA 548 >gi|293374841|ref|ZP_06621143.1| NOL1/NOP2/sun family protein [Turicibacter sanguinis PC909] gi|292646510|gb|EFF64518.1| NOL1/NOP2/sun family protein [Turicibacter sanguinis PC909] Length = 455 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 24/311 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDA-CISPLYIDLTVKFDIETWAHKLNAVM----LPT 200 +P+ F ++++ G+E I + L + + N + Sbjct: 1 MSLPQDFLDKMQQLLGEEFDEFIKSYDHEKSHGLRLNLLKTSMESFKEKNKLTLDSIPWV 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + E P GV+++Q+ SA VLDLCAAPGGK+ Sbjct: 61 EEGFFYKGEERPGKHPYHEAGVYYIQEPSAMSVGAFVEAKPGEKVLDLCAAPGGKSTHVA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + A ++ +R + L N++R+ + ++ FD ++VDAP Sbjct: 121 SQLGQKGLLVANEIYPQRAKILSQNIERMGVKNAIVLNETPARLAKHFPLYFDRIVVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ +++ A Q ++L + +KPGG +V+S C+ +++E+ Sbjct: 181 CSGEGMFRKDVVAQEEWSLENVKLCATRQNEILEEAAKMLKPGGRLVYSTCTFAPEENEQ 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEKIDGVSSGM 430 + + + P E+ +N+ E R+ P + Sbjct: 241 AIAQFISHHP-EFEIESVNAYESFKPGRGEWSQIAVGGIEKTYRLWPHYI--------NG 291 Query: 431 DGFFAVALRRL 441 +G + LR++ Sbjct: 292 EGHYLAVLRKV 302 >gi|212639278|ref|YP_002315798.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized domain [Anoxybacillus flavithermus WK1] gi|212560758|gb|ACJ33813.1| Sun, tRNA and rRNA cytosine-C5-methylase fused to uncharacterized domain [Anoxybacillus flavithermus WK1] Length = 457 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 23/314 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDAC----ISPLYIDLTVKFDIETWAHKLNAVMLPTG 201 +P+ F ++ E + L V +P Sbjct: 7 CHLPKEFVTKMNALLQDEAERFFATYNEEKVNGLRINSLKVSPSTFLNISPWELEPIPFC 66 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-- 259 P A G++++Q+ SA ++ VLDLCAAPGGKT QL Sbjct: 67 PTGFYYYNAQPGKHPYHAAGLYYIQEPSAMFVAEVLAPSPGERVLDLCAAPGGKTTQLAA 126 Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPC 316 + + + A ++ +R++ L N++RL + + + FD +LVDAPC Sbjct: 127 LMNNEGFLLANEIHPKRVKALSENIERLGITNAVVTNETPEKLSETFEGFFDKILVDAPC 186 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G R+ + + + + K A QR +L + GG +V+S C+ +++E++ Sbjct: 187 SGEGMFRKDEEAIQFWSLEHVQKCAQTQRHILSCAYKMLSEGGTLVYSTCTFSPEENEQI 246 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGMD 431 + L + +EL+P+ + ++ + R+ P L+ Sbjct: 247 IDWFLATY-EDMELIPIEKKHGIQPGVSHWTNTHRGNIAHTARLWPHHLKGE-------- 297 Query: 432 GFFAVALRRLIQPK 445 G F +R+ K Sbjct: 298 GHFVAKMRKRGSTK 311 >gi|125975638|ref|YP_001039548.1| NOL1/NOP2/sun family RNA methylase [Clostridium thermocellum ATCC 27405] gi|256003627|ref|ZP_05428616.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM 2360] gi|281416646|ref|ZP_06247666.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20] gi|125715863|gb|ABN54355.1| putative RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum ATCC 27405] gi|255992418|gb|EEU02511.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM 2360] gi|281408048|gb|EFB38306.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum JW20] gi|316939755|gb|ADU73789.1| RNA methylase, NOL1/NOP2/sun family [Clostridium thermocellum DSM 1313] Length = 456 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 16/252 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 T E+ P + G++++Q+ SA +P + VLDLCAAPGGKT Sbjct: 59 PWTKDGFYYNEGENPGKHPYYHAGLYYIQEPSAMLPGAVINAEEGDYVLDLCAAPGGKTV 118 Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 Q+ + + A D+S R++ L N++ + + D FD +LV Sbjct: 119 QMAAGMKGKGLLIANDISSDRVKALVKNIELCGITNAIVTNESPDRLAKKLCAFFDRILV 178 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ D + K QR++L +KPGG +V+S C+ ++ Sbjct: 179 DAPCSGEGMFRKDEDAAKSWGKFKCDKCCAMQREILESADVMLKPGGYLVYSTCTFSPEE 238 Query: 373 SEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429 +E ++ + L + +P + E RI P + Sbjct: 239 NEGMISEFLSRHKNYDILEIPKAYGIDNGRPEWWDNNKELLKTARIWPHKVRGE------ 292 Query: 430 MDGFFAVALRRL 441 G F L++ Sbjct: 293 --GHFVALLKKK 302 >gi|307294658|ref|ZP_07574500.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1] gi|306879132|gb|EFN10350.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1] Length = 395 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 88/459 (19%), Positives = 144/459 (31%), Gaps = 81/459 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL ++ + L+ + + + RD+ VR V Sbjct: 1 MTPS--ARVQAAIELLDAIIASARDGGPAADTLIARYFKERRYAG--SRDRRAVRDHVYD 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R V + V +A E A Sbjct: 57 AVRR----------VAERPESGRAA------MVGLA-------------RERAELAALFD 87 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + H + A I+P W + L ER + A + Sbjct: 88 GSAHGPAPIVDGEA------------GAPAGIVPGWIEPLL--AAPVERDALLGRAPVDL 133 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L D + A + + + G VQDA + + Sbjct: 134 RVNRLKADPDRVAQHYPEAARIAGLPDALRLPEGSPVEQSDPWKWGQVEVQDAGSQLISA 193 Query: 236 LFGTLNNLSVLDLCAAPGGKT-------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 ++V+DLCA GGKT + A D + RL +L +R Sbjct: 194 ACNAAPGMTVIDLCAGAGGKTLALASALGGNGGGKGVLIAADTIRSRLARLDPQAERAGA 253 Query: 289 YAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + +D D VLVDAPCS TGT RR+P+ W + + Sbjct: 254 TFIETLLLDQGHEAGALESLNGRADIVLVDAPCSGTGTWRRNPEARWRLTPARLDRLVAE 313 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q ++L + PGG +V++ C+L ++ + V+ L + I+ Sbjct: 314 QARILDFAAPLLAPGGALVYAVCALTDREGRDQVRAFLERHDGWAV---------ERIEA 364 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 AM + + +TP G DGF+ LRR + Sbjct: 365 AMGRAHGDGLLLTPGH--------DGTDGFYVARLRRTV 395 >gi|289579009|ref|YP_003477636.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus Ab9] gi|289528722|gb|ADD03074.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter italicus Ab9] Length = 459 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G++++Q+ +A V++ +LD+ AAPGGKT I + A ++ K+R++ Sbjct: 83 GLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRIK 142 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N++RL + I + + FD +LVDAPCS G R+ P + Sbjct: 143 ALVENVERLGIRNIVITNETPEKLTTAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLN 202 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 +++ + Q+ +L +KPGGI+V+S C+ +++E V++K L P S Sbjct: 203 NVISCSITQKNILRNVAPLLKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKVEKSEMS 262 Query: 396 AYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ PE +R+ P + G F LR+ Sbjct: 263 KFFDRGYPEWVEGPEDLKKCMRLWPHKVRGE--------GHFIAKLRKK 303 >gi|117920752|ref|YP_869944.1| Fmu (Sun) domain-containing protein [Shewanella sp. ANA-3] gi|117613084|gb|ABK48538.1| Fmu (Sun) domain protein [Shewanella sp. ANA-3] Length = 404 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 80/448 (17%), Positives = 143/448 (31%), Gaps = 72/448 (16%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + LR L Sbjct: 12 ELVISILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARIATVTGDILRRLNLYCF--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + +LL V + + L++ + Sbjct: 66 -LAEIKPEEMERLGSKLLNV--WHLFHNLELPKMQ-------------------YSLPVD 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 R++ + + PEW + + A +P L V Sbjct: 104 AERLAERIEQAKNQPVLWDGCPEWL-DAMGQAQLAASWEKERAALSTPPKRFLRVNGLKV 162 Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + A KL A + T + + ++ F +G++ QDA + Sbjct: 163 TRDDLAQKLAAEFVTTQAVEGVDSALEVTSDSALFRTNCFKDGLFEQQDAGSQRVAAALD 222 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294 + V+D CA GGKT + ++ A+DV + +L+ L+ R + + Sbjct: 223 AKPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRL 282 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 283 IVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSR 342 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GGIVV++ CS+ ++ V L +P L Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED--------------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I +G DGF+ L R+ Sbjct: 382 -------ETISPAETGFDGFYLAKLERI 402 >gi|259908244|ref|YP_002648600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia pyrifoliae Ep1/96] gi|224963866|emb|CAX55368.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae Ep1/96] gi|283478175|emb|CAY74091.1| Ribosomal RNA small subunit methyltransferase F [Erwinia pyrifoliae DSM 12163] Length = 462 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 67/266 (25%), Positives = 118/266 (44%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 E + L + G + + S G+ ++Q+AS+ +PV Sbjct: 43 EPYQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLLYIQEASSMLPVSALFAGGHM 102 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q+ + A + S R++ L NL R + + D Sbjct: 103 PQRVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDG 162 Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FDAVL+DAPCS G +R+ D L + A QR L+ ++ Sbjct: 163 RVFGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSETSTAEIAATQRDLINSAFHALR 222 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+ ++++V++ +L P VE+ PL++ + + EG++ + Sbjct: 223 PGGTLVYSTCTLNLSENQQVIRWLLEQYPDAVEIEPLDTLF---NGAEQVATAEGFLHVF 279 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF LR++ Sbjct: 280 PHIFDSE--------GFFVARLRKVA 297 >gi|169626371|ref|XP_001806586.1| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15] gi|160705823|gb|EAT76170.2| hypothetical protein SNOG_16472 [Phaeosphaeria nodorum SN15] Length = 725 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 32/334 (9%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VK 183 R + + ++L+ I E+ ++L N + A +A +P I + ++ Sbjct: 247 PGRSRTEYRAQMLKDICAYYGYSEFLADKLLNLFPAREAFAFFEANETPRPIVIRTNTLR 306 Query: 184 FDIETWAHKLNAVMLPTGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 A L + + ++ E + + P + G + +Q AS+ +PV Sbjct: 307 THRRELAQSLINRGVQLEPVGKWSKVGLQIFESQVPLGATPEYLAGHYILQAASSFLPVM 366 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + VLD+ AAPGGKT + + + + A D +K R + L N+ RL + Sbjct: 367 ALAPQEHERVLDMTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNSV 426 Query: 293 IIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 + A ++ FD VL+DAPCS TG I + V + D +K Q++L+L Sbjct: 427 VCHYSALEFPRVMGGFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLILSA 486 Query: 352 ISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 I V K GG +V+S CS+ +++E+V+Q L P V+LV + K +A Sbjct: 487 IDSVDHHSKTGGYIVYSTCSVTVEENEQVIQYALNKRPN-VKLVETGLTFGKEGFTNIA- 544 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +R P +DGFF +++ Sbjct: 545 ---GKVRYYPHTY--------NVDGFFVAKFKKI 567 >gi|146094454|ref|XP_001467280.1| nucleolar protein [Leishmania infantum JPCM5] gi|134071645|emb|CAM70335.1| putative nucleolar protein [Leishmania infantum JPCM5] Length = 628 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 124/314 (39%), Gaps = 24/314 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E+ + + + + +A + V + A Sbjct: 230 YEYSEFLMDSILQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 289 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A++ +PV N VLD+ AAPGG Sbjct: 290 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGG 349 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT + + + + A DVS+ R + L NL RL + + D Y + FD V Sbjct: 350 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 409 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS TG I R + ++ +DI +++ QR LLL I K GG VV+S CS Sbjct: 410 LLDAPCSGTGIISRDKSIKTSKQHEDIQRASQLQRALLLSAIDACKIGGYVVYSTCSFLV 469 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSS 428 ++ E +V LR + V + L + R + + Sbjct: 470 EEDEAIVDFALRRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLEFSRRYFPHVH 522 Query: 429 GMDGFFAVALRRLI 442 MDGFF L++L Sbjct: 523 NMDGFFICKLKKLT 536 >gi|255721331|ref|XP_002545600.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404] gi|240136089|gb|EER35642.1| nucleolar protein NOP2 [Candida tropicalis MYA-3404] Length = 623 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L N + + +A + + A L + Sbjct: 245 CEYFGYSEFLAEKLFNLFSPAEAMEFFEANEIARPVTIRTNTLKTRRRDLAQALVNKGVN 304 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 305 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALEPQENERILDMAAA 364 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 365 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 424 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 425 DRVLLDAPCSGTGVIAKDASVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSPTGGVIVY 484 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + P + Sbjct: 485 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKIALTR 538 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 539 RYYPHTYNVDGFYVAKFKKIA 559 >gi|45187619|ref|NP_983842.1| ADL254Wp [Ashbya gossypii ATCC 10895] gi|44982357|gb|AAS51666.1| ADL254Wp [Ashbya gossypii ATCC 10895] Length = 603 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 136/338 (40%), Gaps = 23/338 (6%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 K + + R S LL+ I + E+L N + + +A + + Sbjct: 202 KHMAAEGRSRSEYIDRLLKDICQYFGYTPFLAEKLFNLFSPAEAMEFFEANEVARPVTIR 261 Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASA 230 A L + I + + P + G + +Q AS+ Sbjct: 262 TNTLKTRRRDLAQNLVNRGVNLQPIGSWTKVGLQIFDSQVPVGATPEYLAGHYILQAASS 321 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 +PV N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 322 FLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLG 381 Query: 288 LYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + DA ++ FD +L+DAPCS TG I + V R D ++ Q++ Sbjct: 382 CTNTIVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQ 441 Query: 347 LLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 L+L I V K GG++V+S CS+ +++E VV LR P V+LV A K Sbjct: 442 LILSAIDSVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPN-VKLVETGLAIGKE-G 499 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + I ++ + + +DGFF ++ Sbjct: 500 FTSYRGKKFHHTI--NLTRRYYPHTYNVDGFFVAKFQK 535 >gi|146292408|ref|YP_001182832.1| Fmu (Sun) domain-containing protein [Shewanella putrefaciens CN-32] gi|145564098|gb|ABP75033.1| Fmu (Sun) domain protein [Shewanella putrefaciens CN-32] Length = 463 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 78/450 (17%), Positives = 147/450 (32%), Gaps = 52/450 (11%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF-VL 71 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 42 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRIGDQQAS 99 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + S LL Q + E ++ + + L L Sbjct: 100 ATYFASLSAS--ALLEAHAWQ---------DIATAWHELSQSPIDYQQAQALAVDSLDDK 148 Query: 132 SREKIELLQRIAGISI--IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 L +P WF + + + + P++ + Sbjct: 149 LTLMQHLFPAAKLKPQDLLPNWFWQVCPIDAALQTQSIEAMSSRPPIWGRAQGITSQDAA 208 Query: 190 AHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + + G + ++ + + +G +QD ++ + Q+ + Sbjct: 209 TQLQALGIDASYGHYFNDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDA 268 Query: 244 SVLDLCAAPGGKT------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 D C+ GGKT I S + + D+ LE+L R H Sbjct: 269 HWWDACSGAGGKTLQLRSLMLAKAADNQIPSAGSIISSDIRSNALEELTKRAQRAHFNNI 328 Query: 292 DIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 329 SVARWKSDALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDGIEAVADKAALQLDILSR 388 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 VK GG++V++ CSL ++++VV L+ P L P+ + Sbjct: 389 SSRAVKAGGVLVYATCSLSPLENQDVVTAFLQQHP-EFTLTPIRHPFTGEQTE------- 440 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F + R Sbjct: 441 -MLTVWP--------FEANSDGMFVARMLR 461 >gi|310821489|ref|YP_003953847.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309394561|gb|ADO72020.1| Methyltransferase, RsmB/NOP family [Stigmatella aurantiaca DW4/3-1] Length = 456 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 93/458 (20%), Positives = 164/458 (35%), Gaps = 40/458 (8%) Query: 4 GMNARLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 G +R ++ + + + L L ++ L +++ V R Sbjct: 15 GRPSRRAATAAIEAHVAVLRGEPLKASLATALREAE--GLGGQERRFAALAVRELSRHQR 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL---AVEQAKRDKENR 118 +DA + Q L+R ++ + ++ + R ++ Sbjct: 73 LLDAAARALGHPPGKVGLTEDQALVRYALWRRIFCGEGWARIGPEVRLPGPVRPRTIKDD 132 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-- 176 A +V L + + + A P W ERL + + A+ A Sbjct: 133 LLAGVVEKPLPDMPLPESATERL-AMRYSFPTWLVERLAALHTPPILEALLAALDEEPAL 191 Query: 177 YIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + +L AV L +R+ + + G VQD Sbjct: 192 HFRVRPSGTRDEVLARLTEEGVAAEAVALAPDAVRIADSSHRVFETRAMKTGRLQVQDVG 251 Query: 230 ASIPVQLFGTL----NNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCN 282 + + ++ +V D+CA GGKT L +V A D S+RRL + Sbjct: 252 SQLIAEVCRPPGGSLEGRTVADVCAGAGGKTLALADMVGSAGRVLAGDRSRRRLAQA--- 308 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + + P D +LVDAPCS TG++ R PD W I + Sbjct: 309 --RERVRELSVRNVAFPHPLPLSEADVLLVDAPCSGTGSLGREPDQKWKLTAKAISEFQA 366 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q LL + +PG ++V++ CSL ++++EVV+ L +P L P+ + Sbjct: 367 TQLTLLEEVGREARPGALIVYATCSLLPEENDEVVRGFLAKAPG-FTLEPVAPVL--GAE 423 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 A AL ++R P + GFFA LR+ Sbjct: 424 RAEALCDGPFLRPIPPRVPGG--------GFFAARLRK 453 >gi|304316052|ref|YP_003851197.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777554|gb|ADL68113.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 466 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 110/252 (43%), Gaps = 18/252 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + + G++++Q+ SA V+ + VLDL AAPGGK+ Sbjct: 72 PWCDTGFYYDQNDKPGKHYYHDAGLFYIQEPSAMAVVEALNPVPGDIVLDLSAAPGGKST 131 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 + + + +++ +R++ L N++R+ + I+ + + K FD +LV Sbjct: 132 HIASKLNGEGLLVSNEINSKRVKVLAENIERIGIRNAVILNESPEKLEKTFKDYFDKILV 191 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ ++++ A Q+K+L +KPGGI+V+S C+ ++ Sbjct: 192 DAPCSGEGMFRKDETARDEWSLENVLSCAYRQKKILDSASCMLKPGGIMVYSTCTFSPEE 251 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSS 428 +E V+ L++ EL+ + + ++ +R+ P +L+ Sbjct: 252 NEGVIDHFLKNH-SDFELIEIYKHEGFDNGHSEWVNGCSDLRKCVRLWPHLLKGE----- 305 Query: 429 GMDGFFAVALRR 440 G F LR+ Sbjct: 306 ---GHFIAKLRK 314 >gi|126140362|ref|XP_001386703.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054] gi|126093987|gb|ABN68674.1| nucleolar RNA methyltransferase [Scheffersomyces stipitis CBS 6054] Length = 625 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 81/321 (25%), Positives = 127/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L N + + +A I + A L + Sbjct: 247 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEIARPITIRTNTLKTRRRDLAQTLVNRGVN 306 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 307 LQPIGSWTKVGLQVFDSQVPIGATPEYLAGHYILQAASSFLPVIALAPQENERVLDMAAA 366 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 367 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 426 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GGI+V+ Sbjct: 427 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSATGGIIVY 486 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+L+ K + P ++ Sbjct: 487 STCSIAVDENESVVDYALRKRPN-VKLIEAGLEIGK-----EGFTSYRGKHFNPSLNLTR 540 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGFF +++ Sbjct: 541 RYYPHTYNVDGFFVAKFKKIA 561 >gi|297545215|ref|YP_003677517.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842990|gb|ADH61506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 459 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 16/229 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G++++Q+ +A V++ +LD+ AAPGGKT I + A ++ K+R++ Sbjct: 83 GLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKIGDEGLIVANEIDKKRMK 142 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N++R+ + I + + FD +LVDAPCS G R+ P + Sbjct: 143 ALVENVERMGIRNIVITNETPEKLTTAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLN 202 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 +++ + Q+ +L +KPGGI+V+S C+ +++E V++K L P S Sbjct: 203 NVISCSITQKNILRNVAPLLKPGGILVYSTCTFSPEENEGVIKKFLEEYPEFKVEKSEMS 262 Query: 396 AYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ PE +R+ P + G F LR+ Sbjct: 263 KFFDRGYPEWVEGPEDLKKCMRLWPHKVRGE--------GHFIAKLRKK 303 >gi|149915201|ref|ZP_01903729.1| Fmu (Sun) [Roseobacter sp. AzwK-3b] gi|149810922|gb|EDM70761.1| Fmu (Sun) [Roseobacter sp. AzwK-3b] Length = 388 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 140/455 (30%), Gaps = 81/455 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L V+ L S F +D+ VR V LR Sbjct: 1 MTP--EARIQAAIEVLDGVLAGDA-AEKALTSWGRRSRFAG--SKDRAAVRDHVFQALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVS--VAQILYLDVADYAVVDLAVEQAKRDKEN 117 + L + LR + ++ V E A Sbjct: 56 RRSYACLGGAETGRGL------MLGALRAGGVAPETVFTGQGHAPEVLSQHEAA------ 103 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 A + +P+W L + A + Sbjct: 104 AGAAPVTVGD-----------------RLDLPDWMVP-LFEAALGDGAEAAAVMLRERAP 145 Query: 178 IDLTVKFDIETWAHKLNA----------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + L V + + + + + + + E + +A G +QD Sbjct: 146 VCLRVNIRMNSVSEVIEYMMESGISVRRTEVAEEALIVTEGARKVAQSELYARGGIELQD 205 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++ + VLD CA GGK A A D RR+ L R Sbjct: 206 GASQAAMAALEITPGARVLDYCAGGGGKVLALAARHDAMWFAHDADPRRMADLPARGARA 265 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + D P FD VL D PCS +GT RR PD W + + QR+ Sbjct: 266 GVEVTQLEVGDLAAAGP---FDLVLCDVPCSGSGTWRRAPDAKWRLTPERLDALCAIQRE 322 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + V PGG +V + CS+ + ++E+ L+S P A+ +++ Sbjct: 323 ILESAAALVAPGGQLVLTTCSVFRCENEDQSAAFLQSYP----------AWGETLRRRWP 372 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +S EG DGFF +R+ Sbjct: 373 VSAEG-------------------DGFFLSVFKRI 388 >gi|295658139|ref|XP_002789632.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb01] gi|226283185|gb|EEH38751.1| Nop16-like protein NOP2 [Paracoccidioides brasiliensis Pb01] Length = 677 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 137/318 (43%), Gaps = 23/318 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + A +A SP + + ++ + + A L + Sbjct: 265 CTYYGYSPFLAEKLFNLFTPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVV 324 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 325 LEPVGKWSKVGLQVFESSVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAA 384 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGKT + + + V A D SK R + L N+ RL + +DA + PK Sbjct: 385 PGGKTTYISALMRNTGCVLANDASKLRAKGLIGNIHRLGCKNTIVSHLDAREAFPKILGG 444 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD +L+DAPCS TG I + P V ++ D + Q++LLL I K GG +V Sbjct: 445 FDRILLDAPCSGTGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIV 504 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ +++E VVQ LR P V++V + + + + ++T + + Sbjct: 505 YSTCSVTVEENESVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMGKKFDEKMT--LTRR 561 Query: 423 IDGVSSGMDGFFAVALRR 440 +DGF+ L++ Sbjct: 562 YFPHRENVDGFYVCKLKK 579 >gi|160875201|ref|YP_001554517.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS195] gi|160860723|gb|ABX49257.1| Fmu (Sun) domain protein [Shewanella baltica OS195] gi|315267394|gb|ADT94247.1| Fmu (Sun) domain protein [Shewanella baltica OS678] Length = 404 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 81/448 (18%), Positives = 139/448 (31%), Gaps = 72/448 (16%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + LR L L Sbjct: 12 ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALTTGDILRRLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + R L + + L++ + Sbjct: 68 EISPDEMERFGSKLLN-----AWHLFHGLELPKMQ-------------------YSLQVD 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 R++ + + PEW + + E A + L Sbjct: 104 EARLAERTEQAKTKPVLWDGCPEWL-DAMGREQLGESWEKERAALSTAPKRFLRANGLKV 162 Query: 185 DIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 E A KL A + ++ F +G++ QDA + Sbjct: 163 TREELAAKLAAEFVSTLSVDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALD 222 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293 + V+D CA GGKT + ++ A+DV + +L+KL+ R + + Sbjct: 223 AKPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRV 282 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 I K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 283 IVSSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILTSYSR 342 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GGIVV++ CS+ ++ V L +P + Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLIED--------------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I SG DGF+ L R+ Sbjct: 382 -------ESISPADSGFDGFYLAKLERI 402 >gi|311279266|ref|YP_003941497.1| RNA methylase, NOL1/NOP2/sun family [Enterobacter cloacae SCF1] gi|308748461|gb|ADO48213.1| RNA methylase, NOL1/NOP2/sun family [Enterobacter cloacae SCF1] Length = 499 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + +L V G ++ E + S G++++Q+AS+ +PV Sbjct: 81 YGWQLTPVPWCEEGFWIERNDEEDVPLGSTAEHLSGLFYIQEASSMLPVTALFADGNRPQ 140 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 141 RVMDVAAAPGSKTTQIAARMGNQGAILANEYSASRVKVLHANISRCGISNAALTHFDGRV 200 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + A QR+L+ ++PG Sbjct: 201 FGAALPETFDAILLDAPCSGEGVVRKDPDALKNWSPESNQAIAATQRELIDSAFHALRPG 260 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++EEV+ ++ P +E++PLN+ + D A AL+PEG++ + P Sbjct: 261 GTLVYSTCTLNREENEEVLAWLMARFPQALEILPLNALFP---DAAKALTPEGFLHVFPQ 317 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 318 IYDCE--------GFFVARLRKTA 333 >gi|322501342|emb|CBZ36420.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 628 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 124/313 (39%), Gaps = 24/313 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E+ + + + + +A + V + A Sbjct: 230 YEYSEFLMDSILQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 289 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A++ +PV N VLD+ AAPGG Sbjct: 290 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGG 349 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT + + + + A DVS+ R + L NL RL + + D Y + FD V Sbjct: 350 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 409 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS TG I R + ++ +DI +++ QR LLL I K GG VV+S CS Sbjct: 410 LLDAPCSGTGIISRDKSIKTSKQHEDIQRASQLQRALLLSAIDACKIGGYVVYSTCSFLV 469 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSS 428 ++ E +V LR + V + L + R + + Sbjct: 470 EEDEAIVDFALRRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLEFSRRYFPHVH 522 Query: 429 GMDGFFAVALRRL 441 MDGFF L++L Sbjct: 523 NMDGFFICKLKKL 535 >gi|113970468|ref|YP_734261.1| Fmu (Sun) domain-containing protein [Shewanella sp. MR-4] gi|113885152|gb|ABI39204.1| Fmu (Sun) domain protein [Shewanella sp. MR-4] Length = 404 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 81/448 (18%), Positives = 143/448 (31%), Gaps = 72/448 (16%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + LR L Sbjct: 12 ELVISILAMVLSEGKPLDRAYSQHFSGLK---LVPAEQARIATVTGDILRRLNLYCF--- 65 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + +LL V + + L++ + Sbjct: 66 -LAEIKPEEMERLGSKLLNV--WHLFHKLELPKMQ-------------------YSLPVD 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 R++ + ++ PEW + G A +P L V Sbjct: 104 AERLAERIEQAQRQPVLWDGCPEWLDTMGQAQLGTSW-EKERAALSTPPKRFLRVNGLKV 162 Query: 185 DIETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + A KL + T + + ++ F +G++ QDA + Sbjct: 163 SRDELAQKLATEFVTTQAVEDVDSALEVTSDSALFRTNSFKDGLFEQQDAGSQRVAAALD 222 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII- 294 + V+D CA GGKT + ++ A+DV + +L+ L+ R + + Sbjct: 223 AKPGMRVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKERARRNGAHNIETRL 282 Query: 295 -EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 283 IVGSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILSSYSR 342 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GGIVV++ CS+ ++ V L +P L Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLLED--------------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I SG DGF+ L R+ Sbjct: 382 -------ETISPADSGFDGFYLAKLERI 402 >gi|261419971|ref|YP_003253653.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC61] gi|319766785|ref|YP_004132286.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC52] gi|261376428|gb|ACX79171.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC61] gi|317111651|gb|ADU94143.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y412MC52] Length = 454 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 24/310 (7%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +PE F +++ + A+ + +K D WA + P Sbjct: 1 MRLPEAFVAKMKKLLDEEADEFFAVYENEKINGLRVNPLKTDPGAWAKTAPFSLSPVPFC 60 Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 E P A G++++Q+ SA + +VLDLCAAPGGKT Q Sbjct: 61 PTGFYYEPDEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLG 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 ++ + + A ++ +R++ L N++R L ++ + FD +LVDAP Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERFGLTNTVVVNETPEALAERFPGFFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + + A QR++L + +K GGI+V+S C+ +++E+ Sbjct: 181 CSGEGMFRKDEEAASFWSPAYVEECAARQRRILESAYAMLKEGGILVYSTCTFSPEENEQ 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGM 430 ++ +L + + L+P+ A R+ P L+ Sbjct: 241 TIEWLLEAH-DDLRLLPIAKAGGLEPGQPEWTKTNRSDLIHAARLWPHRLKGE------- 292 Query: 431 DGFFAVALRR 440 G F L++ Sbjct: 293 -GHFVAKLQK 301 >gi|294086051|ref|YP_003552811.1| tRNA/rRNA cytosine-C5-methylase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665626|gb|ADE40727.1| tRNA/rRNA cytosine-C5-methylase [Candidatus Puniceispirillum marinum IMCC1322] Length = 448 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 86/460 (18%), Positives = 152/460 (33%), Gaps = 37/460 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+ + + M L + D+ + + R Sbjct: 1 MTP--AARIAAVIEILQDMPDGQLAGQGLRAGMQRRRYAG--SGDRAAISTLFWQVQRAR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRV-----SVAQILYLDV----ADYAVVDLAVEQA 111 RID LD + + + + L+ + ++A + + D + A Sbjct: 57 ARIDWHLDAIAA-DISPRNQVIAALVMIDQQHENLAHL-FTDTITHAPPALNDNEQAMAA 114 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + AK+ + +E + I + E E + Sbjct: 115 NLAERTLDDAKMPVDVALEWPEFLLEDARTAISRVIDDKQSVEAELAALLDEAPTDLRIN 174 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 I L + P G K L + +G + +QD + Sbjct: 175 PIKLDDRRLLRDRLAGRGIKCYATSLSPWGVRLAKRTRTD--ELQEWKKGQFDIQDEGSQ 232 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 I L + V D+CA GGK A + + +V A+D S RLE+ L R + Sbjct: 233 IAALLCDARPGMQVADVCAGAGGKSLVMAARMQNKGRVLAIDSSAERLERSGERLRRAGI 292 Query: 289 YAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D + FD V++DAPCS +GT RR D W D + + Q+ Sbjct: 293 HNVERKAVDDKWGTRKWRAKFDRVVIDAPCSGSGTWRRQVDARWRLTPDILARYQATQQG 352 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-------IPVELVPLNSAYWK 399 LL + + V PGG +++ CSL + E + + +P + + Sbjct: 353 LLEKARAMVLPGGRIIYITCSLLASECEAQIAAFMADAPELEMADIGDIWDDTIGRLNGG 412 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + L+ G +R+ P DGFF ++ Sbjct: 413 ACPQTATLNASGMLRLLP--------RRDNTDGFFIAIIQ 444 >gi|213419467|ref|ZP_03352533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 207 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 27/229 (11%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRR 275 FAEG VQDASA N +LDLCAAPGGKT + A V A+D+ ++R Sbjct: 1 FAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAVDIDEQR 60 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L ++ NL RL + A + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R Sbjct: 61 LSRVYDNLKRLGMKAT-VKQGDGRYPAQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLR 119 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DI + A Q ++L +KPGG +V++ CS+ +++ + ++ L+ +P Sbjct: 120 RDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSET 179 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ EG DGFF L + Sbjct: 180 GTPDQPGQQNLPGG--EEG-------------------DGFFYAKLIKK 207 >gi|315648477|ref|ZP_07901576.1| Fmu (Sun) domain protein [Paenibacillus vortex V453] gi|315276171|gb|EFU39517.1| Fmu (Sun) domain protein [Paenibacillus vortex V453] Length = 537 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 27/266 (10%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L + + G +++ P + G++++Q+ SA PV+L G VLDLCAA Sbjct: 55 ELEPIPWCSTGFYIRDGERP-GRHPYYHAGLYYIQEPSAMAPVELLGVAPGDIVLDLCAA 113 Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGK+ Q+ + + D+ R + L NL+ + ++ D Sbjct: 114 PGGKSTQIAAKLKGEGVLVSNDLHPDRTKALAKNLEMYGVRNAVVLNEDPERIAGAFPRF 173 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 F +L+DAPCS G R+ +L + +K A QR++L + PGG +V+S C Sbjct: 174 FTKILIDAPCSGEGMFRKDESMLKYWEESSPLKFAEMQREILTSAAKMLTPGGRLVYSTC 233 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------R 414 + +++E ++ + L + LVP+ + + S L+ +G + R Sbjct: 234 TFSPEENEGMIAEFLNNH-QDFRLVPVEHSDYFSPGETKWLTGQGHVGDDVLIQLTGTAR 292 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + P ++ G F L+R Sbjct: 293 LWPHKVKGE--------GHFMAVLQR 310 >gi|294887892|ref|XP_002772268.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus marinus ATCC 50983] gi|239876343|gb|EER04084.1| Proliferating-cell nucleolar antigen p120, putative [Perkinsus marinus ATCC 50983] Length = 658 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 126/323 (39%), Gaps = 29/323 (8%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVML 198 A E + + + + + +A P + + +K A +L A Sbjct: 229 CANYYGYNEELAAYILDMFAPGEAVQLFEANDRPRPMTIRANTIKTRRRLLAQQLIARGC 288 Query: 199 PTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 I + P + G + +Q AS+ +PVQ +VLD+ A Sbjct: 289 QVEPTGEWTKVGLTVKESKVPIGATPEYLSGRYMLQSASSFVPVQALNAQPGETVLDMSA 348 Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KL 306 APGGKT ++ + + A D+ + R L N+ RL L + MD Sbjct: 349 APGGKTTYIGQMMQNQGVLFANDLREDRCTALIANVHRLGLSNVVVTAMDGRKLKDMLPK 408 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-------PGG 359 D VL+DAPCS +G I R P + R+ + + A QR+LLL I V GG Sbjct: 409 LDRVLLDAPCSGSGIIARDPKIKVKRNVKEFTEHAALQRELLLSAIDMVDADTKTTGEGG 468 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD- 418 +VV+S CS+ ++ E V+ +L++ + V + + + + P Sbjct: 469 VVVYSTCSMAVEEDEMVIDAILKARNVRVVAFDDVVNFG-----SEGFTSFRGKQFHPSL 523 Query: 419 -MLEKIDGVSSGMDGFFAVALRR 440 + MDGFF L++ Sbjct: 524 KHSRRFFPHVHNMDGFFVCKLQK 546 >gi|190344542|gb|EDK36232.2| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC 6260] Length = 641 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L N + + +A + + A +L + Sbjct: 266 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVN 325 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 326 LQPIGAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALQPQENERILDMAAA 385 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 386 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 445 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 446 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVY 505 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + +P + Sbjct: 506 STCSVAVDENEAVVDYALRKRPN-VKLVDTELQIGK-----EGFTSYRGKNFSPKLSLTR 559 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGFF +++ Sbjct: 560 RYYPHTYNVDGFFVAKFKKIA 580 >gi|146422021|ref|XP_001486953.1| hypothetical protein PGUG_00331 [Meyerozyma guilliermondii ATCC 6260] Length = 641 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L N + + +A + + A +L + Sbjct: 266 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEIARPVTIRTNTLKSRRRDLAQRLVNRGVN 325 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 326 LQPIGAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALQPQENERILDMAAA 385 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 386 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 445 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 446 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDANSSTGGVIVY 505 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + +P + Sbjct: 506 STCSVAVDENEAVVDYALRKRPN-VKLVDTELQIGK-----EGFTSYRGKNFSPKLSLTR 559 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGFF +++ Sbjct: 560 RYYPHTYNVDGFFVAKFKKIA 580 >gi|126090208|ref|YP_001041689.1| hypothetical protein Sbal_4571 [Shewanella baltica OS155] gi|126174501|ref|YP_001050650.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS155] gi|217973468|ref|YP_002358219.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS223] gi|125997706|gb|ABN61781.1| Fmu (Sun) domain protein [Shewanella baltica OS155] gi|125999864|gb|ABN63934.1| hypothetical protein Sbal_4571 [Shewanella baltica OS155] gi|217498603|gb|ACK46796.1| Fmu (Sun) domain protein [Shewanella baltica OS223] Length = 404 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 81/448 (18%), Positives = 139/448 (31%), Gaps = 72/448 (16%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + LR L L Sbjct: 12 ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALTTGDILRRLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + R L + + L++ + Sbjct: 68 EISPDEMERFGSKLLN-----AWHLFHGLELPKMQ-------------------YSLQVD 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 R++ + + PEW + + E A + L Sbjct: 104 EARLAERTEQAKTKPVLWDGCPEWL-DAMGREQLGESWEKERAALSTAPKRFLRANGLKV 162 Query: 185 DIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 E A KL A + ++ F +G++ QDA + Sbjct: 163 TREELAAKLAAEFVSTLSVDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALD 222 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293 + V+D CA GGKT + ++ A+DV + +L+KL+ R + + Sbjct: 223 AKPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRV 282 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 I K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 283 IASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILTSYSR 342 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GGIVV++ CS+ ++ V L +P + Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLIED--------------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I SG DGF+ L R+ Sbjct: 382 -------ESISPADSGFDGFYLAKLERI 402 >gi|297530072|ref|YP_003671347.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. C56-T3] gi|297253324|gb|ADI26770.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. C56-T3] Length = 454 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 24/310 (7%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +PE F +++ + A+ + +K D WA + P Sbjct: 1 MRLPEAFVAKMKKLLDEEADEFFAVYENEKINGLRVNPLKTDPGAWAKTAPFSLSPVPFC 60 Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 E P A G++++Q+ SA + +VLDLCAAPGGKT Q Sbjct: 61 LTGFYYEPDEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLG 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 ++ + + A ++ +R++ L N++R L ++ + FD +LVDAP Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERFGLTNTVVVNETPEALAERFPGFFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + + A QR++L + +K GGI+V+S C+ +++E+ Sbjct: 181 CSGEGMFRKDEEAASFWSPAYVEECAARQRRILESAYAMLKEGGILVYSTCTFSPEENEQ 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGM 430 ++ +L + + L+P+ A R+ P L+ Sbjct: 241 TIEWLLEAH-DDLRLLPIAKAGGLEPGRPEWTKTNRSDLVHAARLWPHRLKGE------- 292 Query: 431 DGFFAVALRR 440 G F L++ Sbjct: 293 -GHFVAKLQK 301 >gi|260944772|ref|XP_002616684.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720] gi|238850333|gb|EEQ39797.1| hypothetical protein CLUG_03925 [Clavispora lusitaniae ATCC 42720] Length = 599 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L N + + +A I + A L + Sbjct: 224 CEYFGYSEFLAEKLFNLFSPSEAMEFFEANEVARPITIRTNTLKTRRRDLAQTLVNRGVN 283 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N VLD+ AA Sbjct: 284 LQPIGAWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVMALDPQENERVLDMAAA 343 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 344 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIQRLGCKNTIVCHYDAREFPKVIGGF 403 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 404 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVY 463 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + R P M Sbjct: 464 STCSIAVDENEAVVDYALRKRPN-VKLVETGLQIGK-----EGFTSYRGKRFNPKISMTR 517 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 518 RYYPHTYNVDGFYVAKFKKIA 538 >gi|238879878|gb|EEQ43516.1| nucleolar protein NOP2 [Candida albicans WO-1] Length = 618 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ ++L N + + +A I + A L + Sbjct: 240 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVN 299 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 300 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAA 359 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 360 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 419 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 420 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVY 479 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + P + Sbjct: 480 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKISLTR 533 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 534 RYYPHTYNVDGFYVAKFKKIA 554 >gi|241958522|ref|XP_002421980.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36] gi|223645325|emb|CAX39981.1| RNA m(5)C methyltransferase, putative [Candida dubliniensis CD36] Length = 620 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ ++L N + + +A I + A L + Sbjct: 242 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVN 301 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 302 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAA 361 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 362 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 421 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 422 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVY 481 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + P + Sbjct: 482 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKISLTR 535 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 536 RYYPHTYNVDGFYVAKFKKIA 556 >gi|68476951|ref|XP_717453.1| hypothetical protein CaO19.8131 [Candida albicans SC5314] gi|68477142|ref|XP_717364.1| hypothetical protein CaO19.501 [Candida albicans SC5314] gi|46439073|gb|EAK98395.1| hypothetical protein CaO19.501 [Candida albicans SC5314] gi|46439166|gb|EAK98487.1| hypothetical protein CaO19.8131 [Candida albicans SC5314] Length = 618 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 126/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ ++L N + + +A I + A L + Sbjct: 240 CEYFGYSEFLADKLFNLFSPAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVNKGVN 299 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 300 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALEPQENERILDMAAA 359 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D +K R + L N+ RL + DA ++ F Sbjct: 360 PGGKTTYISALMKNTGCVFANDANKARTKSLIANIHRLGCKNTIVCNYDAREFPKVIGGF 419 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 420 DRVLLDAPCSGTGVIAKDESVKVSRTEKDFMQIPHLQKQLLLSAIDSVDAHSSTGGVIVY 479 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV K + P + Sbjct: 480 STCSIAVDENEAVVDYALRKRPN-VKLVDTGLTIGK-----EGFTSYRGKHFNPKISLTR 533 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 534 RYYPHTYNVDGFYVAKFKKIA 554 >gi|154303546|ref|XP_001552180.1| hypothetical protein BC1G_09344 [Botryotinia fuckeliana B05.10] gi|150854655|gb|EDN29847.1| hypothetical protein BC1G_09344 [Botryotinia fuckeliana B05.10] Length = 718 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 134/322 (41%), Gaps = 33/322 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 E+ E+L N + + A +A +P + + ++ A L + Sbjct: 273 CAYYGYSEFLAEKLFNLFPPKEAYAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVV 332 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ +A Sbjct: 333 LEPVGKWSKVGLQIFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASA 392 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D +K R + L N+ RL + DA ++ F Sbjct: 393 PGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNVIVCNYDAREFPRVIGGF 452 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V + D + Q++LLL I V K GG +V+ Sbjct: 453 DRVLLDAPCSGTGVIAKDASVKTNKTERDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVY 512 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS-----IDMAMALSPEGWIRITPD 418 S CS+ +++E+VVQ VL P V+LV A+ K + + + + R P Sbjct: 513 STCSVTVEENEQVVQYVLNKRPN-VKLVETGLAFGKEGFTSYMGKSFDKNMKMTRRYYPH 571 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 +DGFF ++ Sbjct: 572 AY--------NVDGFFVSKFKK 585 >gi|323706599|ref|ZP_08118147.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534054|gb|EGB23857.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacterium xylanolyticum LX-11] Length = 455 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 53/253 (20%), Positives = 113/253 (44%), Gaps = 18/253 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + G++++Q+ SA V+ + VLDL AAPGGK+ Sbjct: 60 PWCDTGFYYNQDDKPGKHYYHDVGLYYIQEPSAMAVVEALNPMPGDMVLDLSAAPGGKST 119 Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 + + + +++ +R++ L N++R+ + I+ + + ++FD +LV Sbjct: 120 HIASKLKGEGLLVSNEINSKRVKVLAENIERMGIRNVVILNESPERLENKFARVFDKILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + ++++ + Q+K+L + +KPGGI+V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDEIAINEWSLENVLSCSLRQKKILDSAANMLKPGGIMVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSS 428 +E V+ L++ EL+ + + ++ + +R+ P +++ Sbjct: 240 NEGVIDYFLKNH-SDFELIEIYNHEGFDNGHPEWVNGCSDLKKCVRLWPHLIKGE----- 293 Query: 429 GMDGFFAVALRRL 441 G F LR+ Sbjct: 294 ---GHFITKLRKK 303 >gi|94502186|ref|ZP_01308683.1| sun protein [Oceanobacter sp. RED65] gi|94425689|gb|EAT10700.1| sun protein [Oceanobacter sp. RED65] Length = 234 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 22/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVT 267 ++ LPGF+ G VQD +A + Q+ +LD C APGGKT L+ + K+T Sbjct: 15 NVSELPGFSLGSCSVQDEAAQLAAQIMKPKEGELILDACCAPGGKTGHLLEASQGLAKIT 74 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 ALD +RL+++ NL+RL A+ + ++ + FD +L+D PCS+TG IRRH Sbjct: 75 ALDSDAKRLQRVHENLERLGYTAKVLQGEAQAPENWWDGQAFDGILLDVPCSATGVIRRH 134 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+ R +DI A Q+ +L + + +KPGG ++++ CS+ + +++ ++ L++ P Sbjct: 135 PDIKLLRQREDIDNLAQLQQAILSKAWTLLKPGGRLLYATCSVTQAENQNNIEAFLQTHP 194 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L + + PD + DGFF LR+ Sbjct: 195 D---------SELVQLHFNTGLDTKYGWQFFPDKNAQ--------DGFFYALLRK 232 >gi|146296789|ref|YP_001180560.1| NOL1/NOP2/sun family RNA methylase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410365|gb|ABP67369.1| putative RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 14/253 (5%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + P + G+ ++Q+ SA PV+ VLDLCAAPGG Sbjct: 55 EKVPWCEDGFYINDEIRLSKHPYYFAGLIYIQEPSAMFPVEALDVKEGEKVLDLCAAPGG 114 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDA 309 KT Q I + + DV R++ L N++ L L I+ + FD Sbjct: 115 KTIQIAAKIGPNGMLVSNDVKPTRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDK 174 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +LVDAPCS G R+ P ++ K QR ++ + +K GG +V+S C+ + Sbjct: 175 ILVDAPCSGEGMFRKDPTSAKKWTSNHPQKYVNLQRSIMTEVDELLKVGGEIVYSTCTFE 234 Query: 370 KQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 +++E ++ L+ V + + +++ L + +RI P ++ Sbjct: 235 PEENEGIIDWFLKKHKNYEVVEIKKYPGFSDGLEINGNLELKKTVRIYPHKVKGE----- 289 Query: 429 GMDGFFAVALRRL 441 G F L+++ Sbjct: 290 ---GHFVCKLKKV 299 >gi|188533653|ref|YP_001907450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia tasmaniensis Et1/99] gi|254766866|sp|B2VJ83|RSMF_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|188028695|emb|CAO96557.1| Conserved hypothetical protein YebU [Erwinia tasmaniensis Et1/99] Length = 478 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 E + L + G + + S G++++Q+AS+ +PV Sbjct: 59 EPYQWALTPIPWCQEGFWISRDDADTLPLGSTAEHLAGLFYIQEASSMLPVSALFDGGDM 118 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q + + + A + S R++ L NL R + + D Sbjct: 119 PQRVMDMAAAPGSKTTQIAAHMGNRGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDG 178 Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + P + FDAVL+DAPCS G +R+ D L + A Q+ L+ ++ Sbjct: 179 RVFGPALPECFDAVLLDAPCSGEGVVRKDADALRNWSQSSTEEIAATQQALINSAFHALR 238 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+ +++++VV +L P V++ PL++ + + A + EG++ + Sbjct: 239 PGGTLVYSTCTLNTRENQQVVNGLLEQYPDAVKVEPLDTLF---MGAERATTAEGYLHVF 295 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF LR++ Sbjct: 296 PHIFDSE--------GFFVARLRKVA 313 >gi|167629053|ref|YP_001679552.1| nol1/nop2/sun family putative RNA methylase [Heliobacterium modesticaldum Ice1] gi|167591793|gb|ABZ83541.1| nol1/nop2/sun family putative RNA methylase [Heliobacterium modesticaldum Ice1] Length = 503 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 118/305 (38%), Gaps = 25/305 (8%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PT 200 +P F R+ + A ++ S L + + A L + Sbjct: 3 PLPPPFINRMTALLLESERNAFFESYESGPVQGLRLNPLKLSRAEFLAIMPFRLDPVAWC 62 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + E P A G++++Q+ SA V+ VLDLCAAPGGK Q+ Sbjct: 63 PTGFYVDGEERPGKHPFHAAGLYYIQEPSAMAVVEALDPQPGERVLDLCAAPGGKATQIA 122 Query: 261 VS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAP 315 + A ++ +R++ L NL+R + + + FD ++VDAP Sbjct: 123 GRLAGRGLLVANEIHPKRVKALSENLERWGARNILVTQESPERLAGRFIADFDRIVVDAP 182 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P+ + + + + A QR+LL ++PGG++V+S C+ +++E Sbjct: 183 CSGEGMFRKLPEAMDDWSEEKVFRCAAMQRELLPLAARMLRPGGVLVYSTCTFAPEENER 242 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 ++ LR E + + E R+ P L G F Sbjct: 243 QIEAFLRDH-REFERESFPAMEHFATGYL-----EKTARLWPHRLRGE--------GHFI 288 Query: 436 VALRR 440 LR+ Sbjct: 289 ARLRK 293 >gi|257096808|sp|A7MKH5|RSMF_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 480 Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + +L V G ++ E + S G +++Q+AS+ +PV Sbjct: 61 YGWQLTPVPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPA 120 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q+ + + + A + S R++ L N+ R ++ + D Sbjct: 121 RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHNVGLTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + A QR+L+ + PG Sbjct: 181 FGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWSPQSDQEIAATQRELIDSAFHALAPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++E V+ +L P VE++ L + + AL+ EG++ + P Sbjct: 241 GTLVYSTCTLNREENQETVRWLLARYPQAVEVLSLEALFP---GADAALTEEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDCE--------GFFVARLRKTA 313 >gi|262041948|ref|ZP_06015131.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040754|gb|EEW41842.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 477 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 124/264 (46%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L V G ++ + + S G++++Q+AS+ +PV Sbjct: 60 YGWQLAPVPWCAEGFWIEREDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADNRQPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DA CS G +R+ D L + + A QR+L+ ++PG Sbjct: 180 FGAALPETFDAILLDATCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++ V++ +L P VE++PL + + D L+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENQSVIEWLLSRYPQAVEILPLGELFPGAADT---LTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|119774800|ref|YP_927540.1| tRNA and rRNA cytosine-C5-methylase [Shewanella amazonensis SB2B] gi|119767300|gb|ABL99870.1| tRNA and rRNA cytosine-C5-methylase [Shewanella amazonensis SB2B] Length = 416 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 78/449 (17%), Positives = 144/449 (32%), Gaps = 70/449 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + +R L + D Sbjct: 24 ELVLGILNQVLMEGSPLDRA---YSRHFSGLKLESEEQARIATVTGELIRRLNLFCFLAD 80 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + R+ + + + L + E ++ R A+ + Sbjct: 81 T-TPERIEREGSRVLN----AWHRFHGLPIPRLRYTLDIEEAVFAERLERAKAEPL---- 131 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FD 185 P+W ++L + A A L Sbjct: 132 ---------------LWDGCPDWL-DKLGQAELGDTWAAERAALSLAPKRYLRTNGLKCT 175 Query: 186 IETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + A +L A + T ++ FA+G + QDA + + Sbjct: 176 RDELATRLAAEGVQTVPVDGVESALEVTSNAALFRTKAFADGWFEQQDAGSQLVAAALDV 235 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V+D CA GGKT + ++ A+DV + +L+ L+ R + + Sbjct: 236 KPGMRVIDACAGAGGKTLHLAAAMTGKGRLLAMDVEQWKLDNLKERARRAGAHNVETRLI 295 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D +L+D PCS G ++R+PD W + + Q +L Sbjct: 296 AGSKTIKRLKLSADRLLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILGSYSRM 355 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GGI+V++ CS+ ++ V L ++P L N Sbjct: 356 VKVGGILVYATCSIMPCENRGQVDAFLAANPNFRLLEDEN-------------------- 395 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I +SG DGF+ L R+ + Sbjct: 396 --------ITPATSGFDGFYLAKLERIAE 416 >gi|153000565|ref|YP_001366246.1| Fmu (Sun) domain-containing protein [Shewanella baltica OS185] gi|304408637|ref|ZP_07390258.1| Fmu (Sun) domain protein [Shewanella baltica OS183] gi|307305466|ref|ZP_07585214.1| Fmu (Sun) domain protein [Shewanella baltica BA175] gi|151365183|gb|ABS08183.1| Fmu (Sun) domain protein [Shewanella baltica OS185] gi|304352458|gb|EFM16855.1| Fmu (Sun) domain protein [Shewanella baltica OS183] gi|306911769|gb|EFN42194.1| Fmu (Sun) domain protein [Shewanella baltica BA175] Length = 404 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 80/448 (17%), Positives = 139/448 (31%), Gaps = 72/448 (16%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + LR L L Sbjct: 12 ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALTTGDILRRLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + R L + + L++ + Sbjct: 68 EISPDEMERFGSKLLN-----AWHLFHGLELPKMQ-------------------YSLQVD 103 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF--- 184 R++ + + PEW + + E A + L Sbjct: 104 EARLAERTEQAKTKPVLWDGCPEWL-DAMGREQLGESWEKERAALSTAPKRFLRANGLKV 162 Query: 185 DIETWAHKLNAV------MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + A KL A + ++ F +G++ QDA + Sbjct: 163 TRDELAAKLAAEFVSTLSVDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALD 222 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DI 293 + V+D CA GGKT + ++ A+DV + +L+KL+ R + + Sbjct: 223 AKPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRV 282 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 I K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 283 IASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILTSYSR 342 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 VK GGIVV++ CS+ ++ V L +P + Sbjct: 343 MVKVGGIVVYATCSIFPCENRGQVDAFLAENPNFRLIED--------------------- 381 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I SG DGF+ L R+ Sbjct: 382 -------ESISPADSGFDGFYLAKLERI 402 >gi|332530506|ref|ZP_08406447.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624] gi|332040075|gb|EGI76460.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624] Length = 469 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 119/459 (25%), Positives = 173/459 (37%), Gaps = 64/459 (13%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRK 78 R S + ++ + V+A+ LR L R +A+ + +P Sbjct: 34 RAGRSASDAIEAVAAGL---------RPGVQALAYAALRGLGRAEALRALLAPRKPVPAV 84 Query: 79 KYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD--KENRHFAKLVNSILRRVSREKI 136 L L ++ Q D + +V+ AVE AKR + + A +N+ LRR RE++ Sbjct: 85 DALLCLALALASTQAQ--DYDAHTLVNQAVEAAKRHGSRSVSNSAGFLNACLRRFLRERV 142 Query: 137 ELLQRIAG--------ISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTVKFDI- 186 +LL I P W+ ERL + P + + + Sbjct: 143 DLLADIDEDPATALVARWNHPRWWIERLRQEAPAHWQAVLDANNNPPPLTLRVNLAQGPV 202 Query: 187 ETWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD--------ASASIPV 234 ET+ L A E P + +PGFA+G VQD Sbjct: 203 ETYLADLQVAGLAAWRNGAQGVTLEQPLPVHRIPGFAQGRVSVQDAAAQLAAPLLLDDLP 262 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + VLD CAAPGGKTA A+V ALDV R ++ NL RL L Sbjct: 263 AARTPGRPIRVLDACAAPGGKTAHLLELIAARGLDAEVIALDVDAERCRRIDENLQRLGL 322 Query: 289 YAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 A+ + FDA+L+DAPC+++G +RRHPDV W R DI A Sbjct: 323 RAQVVAADAGQAAAWRAAGLGDDLRFDAILLDAPCTASGIVRRHPDVRWLRRESDIANLA 382 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q +LL + PGG +++ CS+ K + EE V L L P W Sbjct: 383 RQQARLLAALWPRLLPGGRMLYCTCSVFKAEGEEQVLAFLA-HNKEASLRPAPGHLWPHS 441 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + IR G DGF+ L + Sbjct: 442 AIQSEALTDNAIR--------------GHDGFYYALLSK 466 >gi|156933592|ref|YP_001437508.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii ATCC BAA-894] gi|156531846|gb|ABU76672.1| hypothetical protein ESA_01414 [Cronobacter sakazakii ATCC BAA-894] Length = 464 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + +L V G ++ E + S G +++Q+AS+ +PV Sbjct: 45 YGWQLTPVPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPA 104 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q+ + + + A + S R++ L N+ R ++ + D Sbjct: 105 RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHNVGLTHFDGRV 164 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + A QR+L+ + PG Sbjct: 165 FGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWSPQSDQEIAATQRELIDSAFHALAPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++E V+ +L P VE++ L + + AL+ EG++ + P Sbjct: 225 GTLVYSTCTLNREENQETVRWLLARYPQAVEVLSLEALFP---GADAALTEEGFLHVFPQ 281 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 282 IYDCE--------GFFVARLRKTA 297 >gi|56420302|ref|YP_147620.1| hypothetical protein GK1767 [Geobacillus kaustophilus HTA426] gi|56380144|dbj|BAD76052.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 454 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 24/310 (7%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +PE F +++ + A+ + +K D WA + P Sbjct: 1 MRLPEAFVAKMKKLLDEEADEFFAVYENEKINGLRVNPLKTDPGAWAKTAPFSLSPVPFC 60 Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 E P A G++++Q+ SA + VLDLCAAPGGKT Q Sbjct: 61 PTGFYYEPDEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGERVLDLCAAPGGKTTQLG 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 ++ + + A ++ +R++ L N++R L ++ + FD +LVDAP Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERFGLTNTVVVNETPEALAEQFPGFFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + + A QR++L + +K GGI+V+S C+ +++E+ Sbjct: 181 CSGEGMFRKDEEAASFWSPAYVEECAARQRRILESAYAMLKEGGILVYSTCTFSPEENEQ 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLEKIDGVSSGM 430 ++ +L + + L+P+ A R+ P L+ Sbjct: 241 TIEWLLETY-DDLRLLPIAKAGGLEPGRPEWTKTNRSDLVHAARLWPHRLKGE------- 292 Query: 431 DGFFAVALRR 440 G F L++ Sbjct: 293 -GHFVAKLQK 301 >gi|308187115|ref|YP_003931246.1| rRNA methyltransferase F [Pantoea vagans C9-1] gi|308057625|gb|ADO09797.1| putative rRNA methyltransferase F [Pantoea vagans C9-1] Length = 460 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 124/265 (46%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + +L V G + E + S+ G++++Q+AS+ +PV Sbjct: 43 AGYDWQLTPVPWCDEGFWISREDESLPLGSVAEHLSGLFYIQEASSMLPVTALFDAQPEV 102 Query: 245 --VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + DA Sbjct: 103 SAVMDMAAAPGSKTTQIAARMGNQGVILANEFSSSRVKVLHANISRCGVSNSALTHFDAR 162 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + P FDA+L+DAPCS G IR+ D L + A QR LL +KP Sbjct: 163 VFGPALPEQFDAILLDAPCSGEGVIRKDADALKNWSLASTEEIAATQRDLLDSAFHALKP 222 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G +V+S C+L++ ++++V+ +L+ P VE+VPL+ + A +PEG++ + P Sbjct: 223 SGTLVYSTCTLNQIENQQVIDWLLQRYPDAVEVVPLDGLFE---GAERAATPEGYLHVFP 279 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 M + GFF LR+ Sbjct: 280 QMFDSE--------GFFVARLRKTA 296 >gi|309363032|emb|CAP27286.2| CBR-NOL-1 protein [Caenorhabditis briggsae AF16] Length = 678 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 18/258 (6%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A G+ + + + + P + G + +Q ++ +PV VLD+C+APGG Sbjct: 271 AAEWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 330 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 KT+ + + + + A D S R + NL RL + + + ++ K FD Sbjct: 331 KTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGEEFSKIKPNGFDR 390 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365 +L+DAPCS TG I + V ++D+ D+ + QR+L+L + + GG +V+S Sbjct: 391 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLDANSPNGGYLVYST 450 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423 CS+ +++E VV +L ELVP A + R P M ++ Sbjct: 451 CSVLVEENEAVVNFLLERRHC--ELVPTGLAIGV-----DGYTRFRDYRFHPSLSMTKRY 503 Query: 424 DGVSSGMDGFFAVALRRL 441 +DGF+ +++L Sbjct: 504 YPHVHNIDGFYVAKIKKL 521 >gi|268534138|ref|XP_002632199.1| C. briggsae CBR-NOL-1 protein [Caenorhabditis briggsae] Length = 664 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 18/258 (6%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A G+ + + + + P + G + +Q ++ +PV VLD+C+APGG Sbjct: 258 AAEWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 317 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 KT+ + + + + A D S R + NL RL + + + ++ K FD Sbjct: 318 KTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGEEFSKIKPNGFDR 377 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365 +L+DAPCS TG I + V ++D+ D+ + QR+L+L + + GG +V+S Sbjct: 378 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLDANSPNGGYLVYST 437 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423 CS+ +++E VV +L ELVP A + R P M ++ Sbjct: 438 CSVLVEENEAVVNFLLERRHC--ELVPTGLAIGV-----DGYTRFRDYRFHPSLSMTKRY 490 Query: 424 DGVSSGMDGFFAVALRRL 441 +DGF+ +++L Sbjct: 491 YPHVHNIDGFYVAKIKKL 508 >gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 323 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 135/325 (41%), Gaps = 11/325 (3%) Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ + R + ++ + ERL R ++ + Sbjct: 3 LPEIDDRCHELAERYGVRPYMVARYLTFLGRSETERLLKHMEDIRPAIRTNTILIDPEEL 62 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 V + + K + G L + P SI + + G + QDA++ +P + Sbjct: 63 RRVLEEKRGFELKRCPEPVDVGFWILNDPPISIGATLEYMMGYYVPQDAASMLPPVVLDP 122 Query: 240 LNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 VLD CAAPGGKT L + + + A+DV R+ L+ NL R + + M Sbjct: 123 KPGDRVLDACAAPGGKTTHLAQLMDNEGTLIAIDVDPDRMRALKSNLARCGVANAVALRM 182 Query: 297 DAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 +A D FD +L+DAPC+ GTI + P +RD +DI A QR+L+ + + Sbjct: 183 NALDLPSTDWEFDRILLDAPCTGEGTIHKDPSRKTSRDPEDIATCARLQRRLIDAVVDVL 242 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 +PGG++V+S C+ +++E +VQ + + E V + W + + R Sbjct: 243 RPGGVLVYSTCTFSPEENELIVQYAVDEHGLEPEPVDVG---WADRGLRVPGVEPKVRRT 299 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 ++ GM FF LR+ Sbjct: 300 ----CARLYPHRHGMGIFFVARLRK 320 >gi|323487165|ref|ZP_08092470.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163] gi|323692320|ref|ZP_08106559.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673] gi|323399517|gb|EGA91910.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163] gi|323503645|gb|EGB19468.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673] Length = 461 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 120/309 (38%), Gaps = 22/309 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAHK---LNAVMLPT 200 +P F+ER++ G E + + L + K E + K + + Sbjct: 1 MELPLPFRERMKQMLGDEYGEFLESYDRERSQGLRLNLLKTGREEFLAKTSFMLEPIPWA 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + + P GV+++Q+ SA V VLDLCAAPGGKT Q+ Sbjct: 61 ESGFYYQPQDRPGRHPYHEAGVYYIQEPSAMAVVSFLDPQPGEKVLDLCAAPGGKTTQIA 120 Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + ++ R L N++R+ + + D+ FD + VDAP Sbjct: 121 SRLQGKGFLLSNEIHPARARILSQNVERMGVRNAVVTNEDSGRLAEYFPEFFDRIAVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + T+++ A Q+++L +K GG +V+S C+ Q++E Sbjct: 181 CSGEGMFRKDEEAVREWSTENVEHCALRQQEILANAARMLKAGGRLVYSTCTFAPQENEM 240 Query: 376 VVQKVLRSSPIP-VELVPLNSAYWKSI---DMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 V+ + P +E P+ + A E +RI P Sbjct: 241 AVETFIAGHPEFTIEETPVYEGLSSGVREWGNGSAAGIENTVRIWPHRTRGE-------- 292 Query: 432 GFFAVALRR 440 G F LR+ Sbjct: 293 GHFIAVLRK 301 >gi|295400402|ref|ZP_06810381.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus thermoglucosidasius C56-YS93] gi|294977677|gb|EFG53276.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus thermoglucosidasius C56-YS93] Length = 463 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 110/253 (43%), Gaps = 19/253 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E P A G++++Q+ SA ++ +VLDLCAAPGGKT Sbjct: 66 PFCPTGFYYDGGEQPGKHPYHAAGLYYIQEPSAMFVAEVLAPNPGETVLDLCAAPGGKTT 125 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q ++ + + A ++ +R++ L N++R + + FD +LV Sbjct: 126 QLAAMMKNQGLIVANEIHPKRVKALSENIERFGITNALVTNETPEKLAKYFPGFFDKILV 185 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + + + A QR +L S +K GG++V+S C+ ++ Sbjct: 186 DAPCSGEGMFRKDEEAVRFWSQAHVEQCASKQRHILDCAYSMLKEGGVLVYSTCTFSPEE 245 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVS 427 +E++++ L++ +EL+ + + + E R+ P L+ Sbjct: 246 NEQMIEAFLQTY-DDLELLSIEKVHGIQPGRREWTNTGLEEIERTARLWPHCLKGE---- 300 Query: 428 SGMDGFFAVALRR 440 G F +++ Sbjct: 301 ----GHFVAKMKK 309 >gi|86138310|ref|ZP_01056884.1| NOL1/NOP2/sun family protein [Roseobacter sp. MED193] gi|85824835|gb|EAQ45036.1| NOL1/NOP2/sun family protein [Roseobacter sp. MED193] Length = 389 Score = 146 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 75/449 (16%), Positives = 134/449 (29%), Gaps = 75/449 (16%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L ++ + L + + +D+ VR V LR Sbjct: 1 MTP--AARQQAAIEILDLILD-GEAAEKALTSWGRRNRYAG--SKDRAAVRDHVFTALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + L + LR VD + + Sbjct: 56 RRSFAVLGGAQTGRGL------VLGSLR-------------AEGVDPETVFSGQGYGPSP 96 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178 + ++ + + A IP+W G A ++ Sbjct: 97 LTEAESAEPADFASD--------AERLDIPDWVWPSFSESIGLAAEAAGLALQERAPVHL 148 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASA 230 + ++ + L + + + I + FA+G+ +QDA++ Sbjct: 149 RVNLLRSNRSDAIEALAEESILCEPHPASETALEVTQGGRKIRNSDCFADGLVELQDAAS 208 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 V + + VLD CA GGK A + + A D + R+ L R Sbjct: 209 QAVVDKLPLEDGMRVLDFCAGGGGKSLAMAGRAKIDLFAYDANTSRMNDLPLRAQRAGAD 268 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + + FD VL D PCS +G+ RR P+ W + + Q ++L Sbjct: 269 ---ITCLSEDELENAAAFDLVLCDVPCSGSGSWRRAPEGKWRLTRAMLDEIRLSQGQILQ 325 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V+ GG + ++ CS+ +++ +Q L Sbjct: 326 DAAQLVREGGHLAYATCSMLDEENSAQIQGFLDRHDGWKVAE------------------ 367 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + V G DGFF L Sbjct: 368 -----------QASWQVQDGTDGFFVTVL 385 >gi|157872965|ref|XP_001685003.1| nucleolar protein [Leishmania major strain Friedlin] gi|68128074|emb|CAJ08197.1| putative nucleolar protein [Leishmania major strain Friedlin] Length = 629 Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 123/313 (39%), Gaps = 24/313 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E+ + + + + +A + V + A Sbjct: 231 YEYSEFLMDSILQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMSVEP 290 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A++ +PV N VLD+ AAPGG Sbjct: 291 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENERVLDMSAAPGG 350 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT + + + + A DVS+ R + L NL RL + + D Y + FD V Sbjct: 351 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 410 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS TG I R + ++ DI +++ QR LLL I K GG VV+S CS Sbjct: 411 LLDAPCSGTGIISRDKSIKTSKQYKDIQRASQLQRALLLSAIDACKIGGYVVYSTCSFLV 470 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSS 428 ++ E +V LR + V + L + R ++ Sbjct: 471 EEDEAIVDFALRRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLELSRHYFPHVH 523 Query: 429 GMDGFFAVALRRL 441 MDGFF L++L Sbjct: 524 NMDGFFICKLKKL 536 >gi|170087176|ref|XP_001874811.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650011|gb|EDR14252.1| predicted protein [Laccaria bicolor S238N-H82] Length = 561 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 123/322 (38%), Gaps = 27/322 (8%) Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE---TWAHKLNA 195 + IA ++ E+ + + +A + + A L Sbjct: 179 MADIASYYGYNDFLVEKFFQLFPVAEAIEFFEANEVSRPVTIRTNTLRTRRRDLAQALVN 238 Query: 196 VMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + I I + P + G + +Q AS+ +PV N VLD Sbjct: 239 RGVNLEPIGKWTNVGLQVFESSVPIGATPEYLAGHYMLQAASSLLPVIALSPQPNERVLD 298 Query: 248 LCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP- 303 + +APGGKT + + V A D +K R + L N+ RL + D ++ Sbjct: 299 MASAPGGKTTHIAALLQNTGVVFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKV 358 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGG 359 FD VL+DAPCS TG I + V + D + Q++L+L I V K GG Sbjct: 359 MGGFDRVLLDAPCSGTGVISKDSSVKLNKSDRDFTLLSHLQKQLILCAIDSVSPESKTGG 418 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP-- 417 +V+S CS+ ++E VV LR P V+LV ++ + + P Sbjct: 419 YLVYSTCSVTVDENEAVVDYALRKRPN-VKLVDTGLSFGR-----EGFTKYRGKTFNPSL 472 Query: 418 DMLEKIDGVSSGMDGFFAVALR 439 ++ + MDGFF + Sbjct: 473 NLTRRFYPHVHNMDGFFVSKFK 494 >gi|163751727|ref|ZP_02158945.1| sun protein, putative [Shewanella benthica KT99] gi|161328379|gb|EDP99538.1| sun protein, putative [Shewanella benthica KT99] Length = 404 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 79/448 (17%), Positives = 147/448 (32%), Gaps = 68/448 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++L V+ + L + L+ +Q + + LR L L Sbjct: 12 ELVINVLDMVLSEGKPLDRAYSHHFS---GLQLAPSEQARITVVAGDILRKLNLYCY-LS 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 V + R L + + ++ + VD + +K A Sbjct: 68 DVKSEEMSRMGTRLLNVWHM-FHELELPKMQYALQVDEREYFDRLEKAKAQPALWD---- 122 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV-KFDI 186 PEW + G + + Y+ + + K Sbjct: 123 ------------------GCPEWLDTMGQAQLGDAWARERAALSTQPKRYLRVNLLKCTR 164 Query: 187 ETWAHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 E KL + T + + ++ F +G + QDA + + Sbjct: 165 EDLGKKLRNEQVQTKEVEGVDTALEVTSDSALFRTESFKKGWFEQQDAGSQLVAAAVDAK 224 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + V+D CA GGK A + ++ A+DV + +L+ L+ R + + II Sbjct: 225 PGMRVIDACAGAGGKTLSIAAQMQGKGRLLAMDVEQWKLDSLKQRARRANAHNVETRIIA 284 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 K D VL+D PCS G ++R+PD W + + Q+ +L V Sbjct: 285 SSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVELQKHILQSYSRMV 344 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GGI++++ CS+ +++ + + L + + N Sbjct: 345 KVGGILIYATCSIMPEENRDQIDAFLAENEHFKLIEDEN--------------------- 383 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I SG DGF+ L R+ + Sbjct: 384 -------ISVADSGFDGFYLAKLERISE 404 >gi|284921753|emb|CBG34826.1| conserved hypothetical protein [Escherichia coli 042] Length = 481 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 ++ L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 ASYGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 119 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 PQRVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGIRNVALTHFDG 179 Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ Sbjct: 180 RVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR 239 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + Sbjct: 240 PGGTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVF 296 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF LR+ Sbjct: 297 PQIYDCE--------GFFVARLRK 312 >gi|126729799|ref|ZP_01745612.1| possible NOL1/NOP2/sun family protein [Sagittula stellata E-37] gi|126709918|gb|EBA08971.1| possible NOL1/NOP2/sun family protein [Sagittula stellata E-37] Length = 386 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 133/451 (29%), Gaps = 83/451 (18%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR ++ L+ ++ + L S F +D+ VR V LR Sbjct: 1 MTP--AARIQAAAELIDRIVA-GEAAEKALTTWGRTSRFAG--SKDRAAVRDHVFDVLRM 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + + LLR+ D + A Sbjct: 56 WR------STAVKGGGEHGRARMLGLLRL--------RGIDPDTLFDGKGHAPAPLTEAE 101 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG----------KERVLAIS 169 A + A +P+W +R + G +ER Sbjct: 102 RAA--------------GRMPDGADAWDLPDWLADRFRSDLGEAAGPTALALRERAPVFL 147 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + PT L +V F +G +QDA+ Sbjct: 148 RVNTLKCALAAARDRLAAEGVETAPHTLSPTALEVLSCARG-LVRTGAFTDGWVELQDAA 206 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + V L VLD CA GGKT + GA + A D R+ L R Sbjct: 207 SQAVVDLIPPEGAGRVLDFCAGGGGKTLALAARLPGAALFAHDADPGRMSDLPQRAARAG 266 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + P+ FD V+ D PCS +G RR P+ W D + Q + Sbjct: 267 AKVTVTRQ-------PEGAFDLVIADVPCSGSGAWRRAPEGKWRLTEDRLTDLQSIQADI 319 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L SFV PGG + ++ CS+ ++E V + L P Sbjct: 320 LATCASFVAPGGCLAYATCSVLAAENEAQVARFLAERPGWRRGPS--------------- 364 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + P S G DGFF L Sbjct: 365 -----RQFLP---------SDGGDGFFVCCL 381 >gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. avium ATCC 25291] Length = 390 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 82/379 (21%), Positives = 133/379 (35%), Gaps = 37/379 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + +L V + L + R ++ RD + T R +DA Sbjct: 18 PARGAAFEVLRAVSERDAYANLALPALLRE---RGITGRDAAFATELTYGTCRTRGLLDA 74 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 75 VIGAAAGRPPEAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAAIEFGSAR-AGFVN 133 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKE--RLENFYGKERVLAISD 170 +LRR++ A + P W + + A+ Sbjct: 134 GVLRRIAGRDERSWVQELAPDPARDPIGHAAFVHAHPRWIAQAFADALGAAAAELDAVLA 193 Query: 171 ACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + A + + + L +G+ VQD Sbjct: 194 SDDERPQVHLAARPGALTAAELADAVGGTVGRHSPFAVYLAGGDPGRLAPVRDGLALVQD 253 Query: 228 ASASIPVQ----LFGTLNNLSVLDLCAAPGGKT--------AQLIVSGAKVTALDVSKRR 275 + + + + LDLCA PGGKT + +VTA++ + RR Sbjct: 254 EGSQLVARALTLAPVDGDCGRWLDLCAGPGGKTALLASLGAQRFSGPQFRVTAVEPAPRR 313 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + + N L +++ +D + FD VLVDAPC+ G +RR P+ W R Sbjct: 314 ADLVVENT--RGLP-VEVLRVDGRHTGLQPAFDRVLVDAPCTGLGALRRRPEARWRRQPG 370 Query: 336 DIVKSACFQRKLLLQGISF 354 D+ QR+LL I+ Sbjct: 371 DVPTLTKLQRELLGAAIAL 389 >gi|312111072|ref|YP_003989388.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1] gi|311216173|gb|ADP74777.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. Y4.1MC1] Length = 463 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 110/253 (43%), Gaps = 19/253 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E P A G++++Q+ SA ++ +VLDLCAAPGGKT Sbjct: 66 PFCPTGFYYDGGEQPGKHPYHAAGLYYIQEPSAMFVAEVLAPNPGETVLDLCAAPGGKTT 125 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q ++ + + A ++ +R++ L N++R + + FD +LV Sbjct: 126 QLAAMMKNQGLIVANEIHPKRVKALSENIERFGITNALVTNETPEKLAKYFPGFFDKILV 185 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + + + A QR +L S +K GG++V+S C+ ++ Sbjct: 186 DAPCSGEGMFRKDEEAVRFWSQAHVEQCASKQRHILDCAYSMLKEGGVLVYSTCTFSPEE 245 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVS 427 +E++++ L++ +EL+ + + + E R+ P L+ Sbjct: 246 NEQMIEAFLQTY-DDLELLSIEKVHGIQPGRREWTNTGLEEIERTARLWPHCLKGE---- 300 Query: 428 SGMDGFFAVALRR 440 G F +++ Sbjct: 301 ----GHFVAKMKK 309 >gi|331701427|ref|YP_004398386.1| RNA methylase, NOL1/NOP2/sun family [Lactobacillus buchneri NRRL B-30929] gi|329128770|gb|AEB73323.1| RNA methylase, NOL1/NOP2/sun family [Lactobacillus buchneri NRRL B-30929] Length = 454 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 112/304 (36%), Gaps = 20/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + + GK + P + + L+ Sbjct: 1 MNLPTDFVNKYQQLMGKSEAAQFIASFDEPTTPGFRLNPLKASQPIDLDLSEPTEHCQFG 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 S G + Q+ SA ++ VLDLCAAPGGKT + + Sbjct: 61 YHGQVS-GKTVDHQSGAVYSQEPSAMYVGEVAHPNLGERVLDLCAAPGGKTTHLGSYLQN 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++ +R + L N++R + + D + FD +LVDAPCS G Sbjct: 120 TGLLIANEIDSKRAKALVENVERFGMTNTIVTNTDPDHLAAQLPEFFDRILVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D ++ A QR +L Q + +KPGG +++S C+ ++ E+++ + Sbjct: 180 MFRKDPDAVQYWSVDYPIECAARQRTILTQAVKNLKPGGELIYSTCTFAPEEDEQIIAWL 239 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAV 436 + + E+ P+ +RI P +G F Sbjct: 240 VDTYG--FEIQPIKKFAGMDDGQPDWADGNQDLTNCVRIFPHHF--------NGEGHFIA 289 Query: 437 ALRR 440 L++ Sbjct: 290 KLKK 293 >gi|156063948|ref|XP_001597896.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980] gi|154697426|gb|EDN97164.1| hypothetical protein SS1G_02092 [Sclerotinia sclerotiorum 1980 UF-70] Length = 713 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 133/322 (41%), Gaps = 33/322 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLP 199 + E+L N + + A +A +P + + ++ A L + Sbjct: 274 CAYYGYSGFLAEKLFNLFPPKEAFAFFEANETPRPVVIRTNTLRTHRRDLAQALINRGVV 333 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N VLD+ +A Sbjct: 334 LEPVGKWSKVGLQIFESAVPLGATPEYLAGHYILQAASSFLPVMALAPQENERVLDMASA 393 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + + A D +K R + L N+ RL + DA ++ F Sbjct: 394 PGGKTTHIAALMKNTGCIFANDSNKSRAKGLIGNIHRLGAKNVIVCNYDAREFPKVIGGF 453 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + V + D + Q++LLL I V K GG +V+ Sbjct: 454 DRVLLDAPCSGTGVIAKDASVKTNKTERDFLMLPHLQKQLLLSAIDSVDHASKTGGYIVY 513 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS-----IDMAMALSPEGWIRITPD 418 S CS+ +++E+VVQ VL P V+LV A+ K + + + + R P Sbjct: 514 STCSVTVEENEQVVQYVLNKRPN-VKLVETGLAFGKEGFTSYMGKSFDKNMKMTRRYYPH 572 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 +DGFF ++ Sbjct: 573 AY--------NVDGFFVSKFKK 586 >gi|149239082|ref|XP_001525417.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239] gi|146450910|gb|EDK45166.1| nucleolar protein NOP2 [Lodderomyces elongisporus NRRL YB-4239] Length = 637 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 128/321 (39%), Gaps = 27/321 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ ++L N + + +A I + A L + Sbjct: 253 CEYFGYSEFLADKLFNLFSPAEAIEFFEANEIARPITIRTNTLKTRRRDLAQSLVNRGVN 312 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 313 LQPIGSWTKVGLQIFDSQVPIGATPEYLAGQYILQAASSFLPVMALDPQENERILDMAAA 372 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT ++ + + A D +K R + L N+ RL + DA ++ F Sbjct: 373 PGGKTTYISAMMKNTGCIFANDANKARTKSLIANIHRLGCRNTIVCNYDAREFPKVIGGF 432 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D +L+DAPCS TG I + V +R D ++ Q++LLL I V GG++V+ Sbjct: 433 DRILLDAPCSGTGVIAKDESVKVSRTEKDFIQIPHLQKQLLLSAIDSVDANSPTGGVIVY 492 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ ++E VV LR P V+LV A K + P ++ Sbjct: 493 STCSVAVDENEAVVDYALRKRPN-VKLVETGLAIGK-----EGFTSYRGKHFNPKLNLTR 546 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + +DGF+ +++ Sbjct: 547 RYYPHTYNVDGFYVAKFKKIA 567 >gi|116181006|ref|XP_001220352.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51] gi|88185428|gb|EAQ92896.1| hypothetical protein CHGG_01131 [Chaetomium globosum CBS 148.51] Length = 722 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 140/363 (38%), Gaps = 29/363 (7%) Query: 92 QILYLDVADYAVVDL-AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150 Q+L + + V A+ R A+ N +L+ V ++ P Sbjct: 242 QMLRTRITETIRVLEDFSNLAED---GRSRAEYTNQLLKDVCAYYGYN------ENLFPP 292 Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210 R + I + DL + G + E Sbjct: 293 REAFAFFEANESARPVVIRTNTLRTHRRDLAQALINRGVTLEPVGKWSKVGLQ-VFESTV 351 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + + P + G + +Q AS+ +PV N LD+ AAPGGKT + + + V Sbjct: 352 PLGATPEYLAGHYILQAASSFLPVMALCPQENERCLDMAAAPGGKTTHMSALMKNTGVVF 411 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A D SK R + L N+ RL + DA ++ FD VL+DAPCS TG I + P Sbjct: 412 ANDPSKSRAKGLIGNIHRLGARNVIVCNYDAREFPRVMGGFDRVLLDAPCSGTGVIAKDP 471 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDS--EEVVQKV 380 V RD D ++ Q++LLL I V K GG VV+S CS+ +++ E+VV Sbjct: 472 SVKTNRDEKDFIQLPHTQKQLLLAAIDSVNHASKTGGYVVYSTCSVAIEENFSEQVVAYA 531 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSGMDGFFAVAL 438 L P V+LV + K + P + + +DGFF Sbjct: 532 LSRRPN-VKLVETGLPFGK-----EGFTSYMGKAFHPSLKLTRRYYPHLYNVDGFFVAKF 585 Query: 439 RRL 441 +++ Sbjct: 586 QKV 588 >gi|282850876|ref|ZP_06260250.1| putative ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri 224-1] gi|282557828|gb|EFB63416.1| putative ribosomal RNA small subunit methyltransferase B [Lactobacillus gasseri 224-1] Length = 308 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 128/306 (41%), Gaps = 32/306 (10%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML--------P 199 P+W E L + +G+++ I P + + + + + A+ Sbjct: 17 FPKWLVEYLLDNFGEDQTKEILVRSNQPAANSIRMAVEEDKFEEIKEALKKDGFDFKESC 76 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 L + F +G +QDA+AS+ V F + VLD C+APGGKT Q+ Sbjct: 77 LTAHNLNLNKGGVAQTNLFKDGKITIQDAAASLAVDAFKFTGDEQVLDACSAPGGKTVQI 136 Query: 260 IVS--GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKK---LFDAVLVD 313 V ALD+ + +L ++ RLH+ +DA FD +LVD Sbjct: 137 AEKLTTGNVIALDIHENKLRLVKNAAKRLHVSDKVKTKALDARKAQEYFTAGQFDKILVD 196 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G IRR P++ + +DI A Q +L + GG +V+S C++ ++ Sbjct: 197 APCSGLGLIRRKPEIRCEKSLNDIKNLARIQLSILENISGLLTAGGELVYSTCTISLEED 256 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E VV + L+ P ELVP+ + +RI P + G DGF Sbjct: 257 EGVVNQFLKLHP-DFELVPVQVGKLP---------KQNMVRIFPS--------ADGSDGF 298 Query: 434 FAVALR 439 F L+ Sbjct: 299 FIAKLK 304 >gi|260598310|ref|YP_003210881.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter turicensis z3032] gi|260217487|emb|CBA31639.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter turicensis z3032] Length = 480 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 125/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243 + +L V G ++ E + S G +++Q+AS+ +PV NN Sbjct: 61 YGWQLTPVPWCPEGFWIEREDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADNNAPA 120 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q+ + + + A + S R++ L N+ R + + D Sbjct: 121 RVMDVAAAPGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRNVGLTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + A QR+L+ + PG Sbjct: 181 FGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWSPQSNQEIAATQRELIDSAFHALAPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++++++E V+ +L P VE++ L + + AL+ EG++ + P Sbjct: 241 GTLVYSTCTLNREENQETVRWLLARYPQAVEVLSLEALFP---GADAALTEEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDCE--------GFFVARLRKTA 313 >gi|148553330|ref|YP_001260912.1| Fmu (Sun) domain-containing protein [Sphingomonas wittichii RW1] gi|148498520|gb|ABQ66774.1| Fmu (Sun) domain protein [Sphingomonas wittichii RW1] Length = 389 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 88/457 (19%), Positives = 150/457 (32%), Gaps = 86/457 (18%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISL----TCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M G A + LL ++R L+ + + +D+ +R ++ Sbjct: 1 MTPGARA-QAAIELLDGIVRAAREGGAAADTLIARYFKTRRYAG--SKDRRAIRELIYRA 57 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 +R S + L V +A A Sbjct: 58 IRRTGE---------------VPASGRAAL-VGLA-------------REDAALAAAFDG 88 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 H + + + +P W +R++ A + Sbjct: 89 APHTPAPIAADEE------------GSPAGALPRWLADRIDPS--------EHAALLERA 128 Query: 177 YIDLTVKFDIET----WAHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASAS 231 +DL V A +A P L+ I + + +G+ +QD + Sbjct: 129 PLDLRVNHSRADRDAIAALLPDAQPTPFAPHGLRLPEGTPIEASAPWVDGLVEIQDEGSQ 188 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + ++VLDLCA GGKT A + G ++ A D ++ RL++L R Sbjct: 189 LIALAGQAAGGMTVLDLCAGAGGKTLALADDMGGGGRLIASDTNRARLDRLAPRAQRSGF 248 Query: 289 YAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + +D + D VLVDAPCS TGT RR+P+ W D + + Sbjct: 249 GGIETRLLDPGREMATLGDLRDACDVVLVDAPCSGTGTWRRNPEARWRLTPDRLARLVET 308 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +LL V+PGG +V++ CSL ++ ++ L + Sbjct: 309 QARLLDLAADLVRPGGALVYAVCSLLDEEGAGQLRAFLGRRSSFA---------AAQLPF 359 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +G ++P G DGFF L R Sbjct: 360 SAGRYQDGGTLLSPGH--------DGTDGFFVARLVR 388 >gi|17536757|ref|NP_493742.1| NucleOLar protein family member (nol-1) [Caenorhabditis elegans] gi|14574242|gb|AAC78177.2| Hypothetical protein W07E6.1 [Caenorhabditis elegans] Length = 664 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A G+ + + + + P + G + +Q ++ +PV VLD+C+APGG Sbjct: 259 AADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 318 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 KT+ + + + + A D + R + NL RL + + + ++ + FD Sbjct: 319 KTSHIAALMKNSGVLFANDANFTRCRAIIGNLHRLGVNNTVVCNLGGEEFSKIRPNGFDR 378 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365 +L+DAPCS TG I + V ++D+ D+ + QR+L+L + + GG +V+S Sbjct: 379 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTMQRQLILSALDSLDANSPNGGYLVYST 438 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423 CS+ +++E VV +L ELVP + + R P M ++ Sbjct: 439 CSVLVEENEAVVNFLLERRHC--ELVPTGLSIGV-----DGYTRFRDYRFHPSLSMTKRY 491 Query: 424 DGVSSGMDGFFAVALRRL 441 +DGF+ +++L Sbjct: 492 YPHVHNIDGFYVAKIKKL 509 >gi|308456988|ref|XP_003090900.1| CRE-NOL-1 protein [Caenorhabditis remanei] gi|308260037|gb|EFP03990.1| CRE-NOL-1 protein [Caenorhabditis remanei] Length = 677 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A G+ + + + + P + G + +Q ++ +PV VLD+C+APGG Sbjct: 270 AADWTKVGLVVYDSQVPVGATPEYLAGHYMIQGLNSLLPVMALAPQPGDRVLDMCSAPGG 329 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 KT+ + + + + A D S R + NL RL + + + ++ + FD Sbjct: 330 KTSHIAALMKNSGTLFANDASFDRCRAIIGNLHRLGVNNAVVCNLGGEEFAKIRPNGFDR 389 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSN 365 +L+DAPCS TG I + V ++D+ D+ + QR+L+L + + GG +V+S Sbjct: 390 ILLDAPCSGTGVIWKDQSVKTSKDSQDVQRRHTVQRQLILSALDSLDANSPNGGYLVYST 449 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKI 423 CS+ +++E VV +L ELVP + + R P M ++ Sbjct: 450 CSVLVEENEAVVNFLLERRHC--ELVPTGLSIGV-----DGYTRFRDYRFHPSLSMTKRY 502 Query: 424 DGVSSGMDGFFAVALRRL 441 +DGF+ +++L Sbjct: 503 YPHVHNIDGFYVAKIKKL 520 >gi|163746276|ref|ZP_02153634.1| NOL1/NOP2/sun family protein, putative [Oceanibulbus indolifex HEL-45] gi|161380161|gb|EDQ04572.1| NOL1/NOP2/sun family protein, putative [Oceanibulbus indolifex HEL-45] Length = 386 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 88/451 (19%), Positives = 146/451 (32%), Gaps = 77/451 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L + ++ L S F +D+ VR V LR Sbjct: 1 MTPG--ARVSAAIEVLDAI-AGGLAAEQALTRWARQSRFAG--SKDRAAVRDHVFDVLRQ 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + V L+ AD + A + Sbjct: 56 RRTAAHYGCGETGR-----------ALMIGV---LHGQGADLDTLFTGEGHAPTPLSDE- 100 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI- 178 R+ + + A + +P+W + + Sbjct: 101 ------------ERQVPDAPEDRATKNNLPDWLLPLFDAALADKADAVAVALQARGPICL 148 Query: 179 -----DLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + V A + A L + + E I + F++G +QDA++ Sbjct: 149 RVNTARIEVPAAQALLAEDGVQTCANPLADAALTVTEGARRIRNSRAFSDGYVELQDAAS 208 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289 V VLD CA GGK L + ++ A D+ RR+ L +R Sbjct: 209 QAVVAALPL--GGRVLDYCAGGGGKALALAMDPSREITAHDIDPRRMSDLTPRAERAG-- 264 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I DA +D VL DAPCS +G RR + WT D + + Q ++L Sbjct: 265 -VSITLADAEQAKAGGPYDLVLCDAPCSGSGAWRRAAEGKWTLTPDRLAELTGIQDQILD 323 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + P G++ ++ CSL ++++E V+ L P A+ + ++P Sbjct: 324 TAAALTAPQGVLAYATCSLFREENEARVEAFLTRHP----------AWKIARMDRYDVTP 373 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G DGFF+ L R Sbjct: 374 DG-------------------DGFFSAQLTR 385 >gi|225028078|ref|ZP_03717270.1| hypothetical protein EUBHAL_02348 [Eubacterium hallii DSM 3353] gi|224954548|gb|EEG35757.1| hypothetical protein EUBHAL_02348 [Eubacterium hallii DSM 3353] Length = 485 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 124/309 (40%), Gaps = 22/309 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-----KLNAVMLPT 200 +PE ++ +++ G + L D+ L V + A L+ + Sbjct: 1 MNLPEDYQNKMQKMLGGDEYLQYLDSFNYSYGQTLRVNQLKKEPADFIRRFLLDGQVSWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 E + + + P + GV+++Q+ SA P VLDLCAAPGGK+ Sbjct: 61 STGFYYEGEQKLSAHPYYYAGVYYLQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKSTALA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAP 315 + + + D+S R + L N++ + + FD +LVDAP Sbjct: 121 AKLQGEGFLLSNDISASRCKPLLKNMEMAGVKNSVITCESPEKLAGRFAGYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G RR P ++ + +++ + A QR++L +KPGG +++S C+ K++ E+ Sbjct: 181 CSGEGMFRREPSMVKSWSPEEVERYAKLQREILTSAAQMIKPGGYLLYSTCTFAKEEDEQ 240 Query: 376 VVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMD 431 V+ L ++ +PL + E R P ++ Sbjct: 241 TVEYFLEQHRDFSLQELPLCDGIEEGKPEWTIRGREDVKNCRRFLPHKVKGE-------- 292 Query: 432 GFFAVALRR 440 G FA R+ Sbjct: 293 GHFAALFRK 301 >gi|163749486|ref|ZP_02156734.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella benthica KT99] gi|161330895|gb|EDQ01822.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella benthica KT99] Length = 458 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 80/446 (17%), Positives = 150/446 (33%), Gaps = 36/446 (8%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 HL + VM K+ ++ + + +D+ ++R + R+ ++ Sbjct: 33 LHLFTQVMEKKQPADRVVGEYFRVNKKHG--SKDRRVIRESLFALFRWWGWLNKFSTHTG 90 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ S +L ++ ++ + K+ L + Sbjct: 91 TCTVNTGTQSWFTMLTLNA-RLESHSWEPFIAAWTGFSGQKQALILDADTPLETVSAKCD 149 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 ++PEWF + ++R+ + P Sbjct: 150 WLASQFPAISFTTDDLVPEWFWQTCPIQDAEQRLAMVQALSSRPPIWARVQNIATNEAIA 209 Query: 192 KLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 KL A + I L ++ + + EG +QD + + Q+ N + Sbjct: 210 KLAKLDITATASEYFSDSISLGHKSINLNGMSLYREGELEIQDLGSQVVGQICNPSPNDN 269 Query: 245 VLDLCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 D C+ GGK+ Q + + DV ++ LE+L R Sbjct: 270 WWDTCSGAGGKSLQLRSLMLAKDKQARGTIIVSDVRRKPLEELAKRAKRAGFKGITASPW 329 Query: 297 DAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + D P FD VLVDAPCS TGT RR+PD+ W + + Q ++ + V Sbjct: 330 KSDDLPVPHNHFDGVLVDAPCSCTGTWRRNPDMRWIDGIEAVQDKPDLQLDIISRSSQAV 389 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GG +V++ CSL ++E+VV L +V + E + + Sbjct: 390 KIGGTLVYATCSLSPLENEDVVNAFLAKHADFTLVVTRHP----------FTGVEACMHL 439 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + + DG F ++R Sbjct: 440 -------VLPYQADTDGMFVARMKRK 458 >gi|218673656|ref|ZP_03523325.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli GR56] Length = 389 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 80/413 (19%), Positives = 139/413 (33%), Gaps = 42/413 (10%) Query: 45 DQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 D+ + IV LR ++D ++ Sbjct: 2 DRAAIGNIVYDALRMRLSHAWLMDD------DSAAAIAHAVM-------------FRQWG 42 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 A +++ +++ + IPEW + E +G Sbjct: 43 FTPDRLAAELADDKFAPPPLSADALAAFASRSLDDAPPHIRGDIPEWIQPSFERAFGAGW 102 Query: 165 VLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELP----------ES 211 + A + +DL + L I + + Sbjct: 103 LAEA-QALAARPTLDLRANILKSSRDKAVKALERAGAQAAKIARYGIRIAAGEGASRLPN 161 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268 + + F +G + VQD + I L + +LD CA GGKT + + + +V A Sbjct: 162 VTAELSFQKGWFEVQDEGSQIVADLVLAKDGEQILDYCAGGGGKTLAMAAAMQNKGQVHA 221 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 D ++RL + L R + + D VLVDAPC+ TGT RR PD Sbjct: 222 YDADRKRLAPIIERLKRAGTRNVQVHDDARGLSGLAGRCDKVLVDAPCTGTGTWRRRPDT 281 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W ++ + Q+ L Q FVKPGG +++ CS+ Q++EE V++ +P Sbjct: 282 KWRLTAKNLDERTAQQQDALAQAGGFVKPGGELIYVTCSVLPQENEEQVRRFAADNPDFQ 341 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L + A + + + S+ DGFF ++R Sbjct: 342 IVGALPAWDALFGRDAPRPHSSDGLTV------TLTPASTDTDGFFFCRMQRK 388 >gi|84686867|ref|ZP_01014751.1| possible NOL1/NOP2/sun family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665064|gb|EAQ11544.1| possible NOL1/NOP2/sun family protein [Rhodobacterales bacterium HTCC2654] Length = 390 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 85/449 (18%), Positives = 143/449 (31%), Gaps = 75/449 (16%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L + +L + + +D+ +R IV +R Sbjct: 1 MTP--AARLSAAIEILDNWLAGAAP-EQVLTRWGRANRYAG--SKDRAAIRDIVYDAVRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + L + LR + A D + A Sbjct: 56 RRSFATLGGGETGRGL------VLGGLRAAGA--------DPDGLFTGDRFAPSPLTEE- 100 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-RVLAISDACISPLYI 178 A +P+W +++ G + +A S +P+++ Sbjct: 101 -----------ERTVLDLRNAPPAVRLDLPDWVLPLMQDSLGADCEAVAHSLRHRAPVFL 149 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDASA 230 + K L + T L + + + +G+ +QDA++ Sbjct: 150 RVNTAKVSRAGAQAALADEGIGTTEHTLSDTALEVTSGARRVHISRVYQDGLVELQDAAS 209 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V L + VLD CA GGK L GA VTA D+ R+ L R + Sbjct: 210 QAVVDLLDVTPGMRVLDYCAGGGGKALALAAQGAAVTAHDIDAGRMRDLPERARRAGVDI 269 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + FD V DAPCS +G+ RR P W+ D + Q +L + Sbjct: 270 DI-----SAPGQSGDGFDLVFADAPCSGSGSWRRAPQGKWSLTRDGLDALCLMQATILDE 324 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 V+PGG + ++ CSL +++ ++ + P + Sbjct: 325 IADHVRPGGRIAYATCSLFDEENMSQIKAFVARRPEW--------------------TLT 364 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 R TP G DGFF L Sbjct: 365 ASRRFTP---------LDGGDGFFVAILE 384 >gi|323968602|gb|EGB64008.1| NOL1/NOP2/sun family protein [Escherichia coli M863] Length = 481 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERNDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|292488502|ref|YP_003531386.1| ribosomal RNA small subunit methyltransferase F [Erwinia amylovora CFBP1430] gi|291553933|emb|CBA20978.1| Ribosomal RNA small subunit methyltransferase F [Erwinia amylovora CFBP1430] Length = 462 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G + + S G++++Q+AS+ +PV Sbjct: 45 YQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQ 104 Query: 244 SVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q+ + A + S R++ L NL R + + D Sbjct: 105 RVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRV 164 Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + + FDAVL+DAPCS G +R+ D L + A QR L+ ++PG Sbjct: 165 FGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++++VV+ +L P V + PLN+ + + EG++ + P Sbjct: 225 GTLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLF---NGAEQVATAEGFLHVFPH 281 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 282 IFDSE--------GFFVARLRKV 296 >gi|304396187|ref|ZP_07378069.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB] gi|304356556|gb|EFM20921.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. aB] Length = 547 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + +L V G + E + S+ G++++Q+AS+ +PV Sbjct: 130 AGYGWQLTPVPWCEEGFWISREDESLPLGSVAEHLSGLFYIQEASSMLPVTALFDTQPEV 189 Query: 245 --VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + DA Sbjct: 190 SAVMDMAAAPGSKTTQIAARMGNQGVILANEFSSSRVKVLHANISRCGVSNSALTHFDAR 249 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + P FDA+L+DAPCS G IR+ D L A QR LL +K Sbjct: 250 VFGPALPEQFDAILLDAPCSGEGVIRKDADALKNWSLASTEAIADTQRDLLDSAFHALKA 309 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C+L++ ++++V+ +L+ P VE+VPL + A +PEG++ + P Sbjct: 310 GGTLVYSTCTLNQIENQQVIDWLLQRYPDAVEVVPLEGLF---SGAEKAATPEGYLHVFP 366 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 M + GFF LR+ Sbjct: 367 QMFDSE--------GFFVARLRKTA 383 >gi|120599595|ref|YP_964169.1| Fmu (Sun) domain-containing protein [Shewanella sp. W3-18-1] gi|120559688|gb|ABM25615.1| Fmu (Sun) domain protein [Shewanella sp. W3-18-1] Length = 463 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 80/448 (17%), Positives = 156/448 (34%), Gaps = 48/448 (10%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF-VL 71 L + ++ +L + + +D+ ++R + R+ + D Sbjct: 42 QLFDEIQSSKMPADRILANYFREHKKHG--SKDRKVIRESLFSLFRWWGWFQRIGDQQAS 99 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + S LL Q D A + Q+ D + + + + Sbjct: 100 ATYFASLSAS--ALLEAHAWQ-------DTATAWHELSQSPIDYQLAQALAVDSLDGKLT 150 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 + + ++ ++P+WF + + L + + P++ + Sbjct: 151 LMQHLFPAAKLKPQDLLPDWFWQVCPIDAALQTQLIEAMSSRPPIWGRAQGITSQDAATQ 210 Query: 192 KLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + + G + ++ + + +G +QD ++ + Q+ + Sbjct: 211 LQAIGIDASYGHYFNDAINLGSKSMNLNEIALYKDGNIEIQDLASQVIGQICAPEPDAHW 270 Query: 246 LDLCAAPGGKTAQ------------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 D C+ GGKT Q S + + D+ LE+L R H + Sbjct: 271 WDACSGAGGKTLQLRSLMLTKAADTQTPSTGSIISSDIRSNALEELTKRAQRAHFNGISV 330 Query: 294 IEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + P FD VLVDAPCS TGT RR+PD+ W + + A Q +L + Sbjct: 331 ARWKSVALPVPADHFDGVLVDAPCSCTGTWRRNPDMRWLDSVEAVADKAALQLDILSRSS 390 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 VK GG++V++ CSL ++++VV L+ P L P+ + Sbjct: 391 HAVKAGGVLVYATCSLSPLENQDVVTAFLQQHP-EFTLTPIRHPFTGEQTE--------M 441 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P + DG F V + R Sbjct: 442 LTVWP--------FEANSDGMFVVRMLR 461 >gi|117926743|ref|YP_867360.1| Fmu (Sun) domain-containing protein [Magnetococcus sp. MC-1] gi|117610499|gb|ABK45954.1| Fmu (Sun) domain protein [Magnetococcus sp. MC-1] Length = 404 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 31/312 (9%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTG 201 +P+W + YG++ ++ A + +DL V E A +L + + Sbjct: 107 YYSLPDWLWQAWCEQYGQDAAQMLAAAMLEQAPVDLRVNRQRASREGVAQRLLESGVESA 166 Query: 202 GIRLKELPESIV------SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + + + P F EG+ +QD + L + ++D CA GGK Sbjct: 167 PLAISADGLRLTKRHLLRDHPVFLEGLAEIQDGGSQCIAPLLQPVAGQLLVDFCAGGGGK 226 Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLFD 308 T L + + ++ ALD + RL++L L R + E D + D Sbjct: 227 TVHLAALMQNKGRILALDTQEHRLKRLAPRLKRNQIKMVQSHTIRHERDPWLSRWYGKAD 286 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS +GT+RRHP++ W + + A Q LL VK GG +V++ CSL Sbjct: 287 GVLVDAPCSGSGTLRRHPEIKWQLEPGQVGSLAIQQGALLEGAAHLVKRGGRLVYATCSL 346 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 Q++EEVV+ LR++ + G ++ K+ + Sbjct: 347 LAQENEEVVEAFLRTNRGF---------------RLEEIQGLGDLQRLATPYLKVMPQQA 391 Query: 429 GMDGFFAVALRR 440 DGFF+ L R Sbjct: 392 QTDGFFSAVLIR 403 >gi|312172646|emb|CBX80902.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Erwinia amylovora ATCC BAA-2158] Length = 478 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G + + S G++++Q+AS+ +PV Sbjct: 61 YQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQ 120 Query: 244 SVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q+ + A + S R++ L NL R + + D Sbjct: 121 RVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRV 180 Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + + FDAVL+DAPCS G +R+ D L + A QR L+ ++PG Sbjct: 181 FGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++++VV+ +L P V + PLN+ + + EG++ + P Sbjct: 241 GTLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLF---NGAEQVATAEGFLHVFPH 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 298 IFDSE--------GFFVARLRKV 312 >gi|218281184|ref|ZP_03487710.1| hypothetical protein EUBIFOR_00271 [Eubacterium biforme DSM 3989] gi|218217630|gb|EEC91168.1| hypothetical protein EUBIFOR_00271 [Eubacterium biforme DSM 3989] Length = 435 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 64/288 (22%), Positives = 116/288 (40%), Gaps = 19/288 (6%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 K+ A ++ PLY + + + + + + + P Sbjct: 10 MKELLKDEYDAYMESLSKPLYRGMRINLKKAELNEFDHLESPSQFCKESYYVDKPLGNHP 69 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKR 274 G +++Q+ SAS V++ + VLDLCAAPGGK+ Q+ + + + ++ + Sbjct: 70 YHICGCFYLQEPSASSAVEILDVQEDDYVLDLCAAPGGKSTQIASHLKSGYLVSNEIDAK 129 Query: 275 RLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R+ + + D FD +LVDAPCS G I++H L Sbjct: 130 RAQILLSNIERMGVKNVAVTNSSVDKLAKVFDCCFDKILVDAPCSGEGMIKKHDIALNHW 189 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++I A Q+++L S +KPGG +V+S C+ ++ E+VV L Sbjct: 190 SIENIELCAARQKEILEYAYSMLKPGGTLVYSTCTYALEEDEDVVLSFLEKH------ED 243 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + RI P G +G F ++ Sbjct: 244 IQLVDPEVLWGRKGFKDLNVRRIFP---------MDGGEGHFIAKFKK 282 >gi|331683339|ref|ZP_08383940.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli H299] gi|331079554|gb|EGI50751.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli H299] Length = 479 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|319426572|gb|ADV54646.1| Fmu (Sun) domain protein [Shewanella putrefaciens 200] Length = 404 Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 80/447 (17%), Positives = 138/447 (30%), Gaps = 70/447 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + LR L L Sbjct: 12 ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALVTGDILRRLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + R L A L+ D+ + Sbjct: 68 EISPDEMERYGSKLLN------AWHLFHDLP-----------------LPKMQYSLPVDE 104 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 +R++ + ++ PEW GK A + L Sbjct: 105 QRLAERIEQAKTQLVLWDGCPEWLDTMGREQLGKSW-EKERAALSTAPKRFLRANGLKVT 163 Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + KL A ++ F EG++ QDA + Sbjct: 164 RDELIAKLAAEYVSTLPVDTVNSALEVTSDSALFRTQSFKEGLFEQQDAGSQRVAAALDA 223 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V+D CA GGKT + ++ A+DV + +L+KL+ R Y + Sbjct: 224 KPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAYNVETRLI 283 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 284 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILNSYSRM 343 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GGI+V++ CS+ ++ V L +P + Sbjct: 344 VKVGGILVYATCSIFPCENRGQVDAFLAENPNFRLIED---------------------- 381 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I +G DGF+ + R+ Sbjct: 382 ------ETISPADTGFDGFYLAKIERI 402 >gi|292899688|ref|YP_003539057.1| hypothetical protein EAM_1978 [Erwinia amylovora ATCC 49946] gi|291199536|emb|CBJ46653.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] Length = 478 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 118/263 (44%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G + + S G++++Q+AS+ +PV Sbjct: 61 YQWALTPIPWCPEGFWISRDDADKLPLGSTAEHLAGLFYIQEASSMLPVSALFAGGNMPQ 120 Query: 244 SVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q+ + A + S R++ L NL R + + D Sbjct: 121 RVMDMAAAPGSKTTQIAACMGDRGAILANEYSASRVKVLHANLSRCGISNTAMTHFDGRV 180 Query: 301 YCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + + FDAVL+DAPCS G +R+ D L + A QR L+ ++PG Sbjct: 181 FGSALPECFDAVLLDAPCSGEGVVRKDADALRNWSATSTAEIAATQRDLINSAFHALRPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++++VV+ +L P V + PLN+ + + EG++ + P Sbjct: 241 GTLVYSTCTLNRSENQQVVRWLLEQYPDAVAIEPLNTLF---NGAEQVATAEGFLHVFPH 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 298 IFDSE--------GFFVARLRKV 312 >gi|296423329|ref|XP_002841207.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637442|emb|CAZ85398.1| unnamed protein product [Tuber melanosporum] Length = 643 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 127/326 (38%), Gaps = 31/326 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L + + + +A + A L + Sbjct: 253 CAYYGYSEFLAEKLFHLFSPHEAFSFFEANEKERPHVIRTNTLKTGRRELAQALINRGVT 312 Query: 200 TGGI--------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + ++ E + + P + G + +Q AS+ +PV N +LD+ AA Sbjct: 313 LEPVGKWSKVGLQIFESQVPLGATPEYLAGHYILQAASSFLPVMALAPQENERILDMAAA 372 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGKT + + + V A D ++ R + L N+ RL + + DA ++ F Sbjct: 373 PGGKTTYISALMKNTGCVFANDSNRARTKGLIGNIHRLGVKNTIVCNYDAKEFPKVIGGF 432 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPCS TG I + P V ++ D + Q++LLL I V GG +V+ Sbjct: 433 DRVLLDAPCSGTGVISKDPSVKTNKNAKDFMLLPHLQKQLLLCAIDSVDYASPTGGYLVY 492 Query: 364 SNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGW---IRITPDM 419 S CS+ +++E VV+ LR P + L E R P M Sbjct: 493 STCSVTVEENESVVEYALRKRPNVKLVETGLTFGREGFTSYRGKTFNEKMKWARRFYPHM 552 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445 +DGFF +++ K Sbjct: 553 Y--------NVDGFFVAKFKKIGPTK 570 >gi|303242957|ref|ZP_07329415.1| RNA methylase, NOL1/NOP2/sun family [Acetivibrio cellulolyticus CD2] gi|302589506|gb|EFL59296.1| RNA methylase, NOL1/NOP2/sun family [Acetivibrio cellulolyticus CD2] Length = 457 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 118/310 (38%), Gaps = 22/310 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------P 199 +P F ++++N + P + L V + L Sbjct: 1 MKLPVEFLDKIKNLLDAAEYEDFIKSYDLPRFYGLRVNTLKISVEEFLKISPFKLEPIPW 60 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 T E+ P + G++++Q+ SA +P + ++LDLCAAPGGKT Q+ Sbjct: 61 TKDGFYYNEGENPGKHPYYYAGLYYIQEPSAMLPGAVIDAKPGENILDLCAAPGGKTVQI 120 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDA 314 + + A D++ R++ L N++ + + + FD +L+DA Sbjct: 121 AAGMKGKGLLVANDINSDRVKALVKNIELCGITNAVVTNDSPQNLSAKFNHFFDKILIDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ D + + QR +L +KPGG +V+S C+ +++E Sbjct: 181 PCSGEGMFRKDEDAAKSWGKYKCDLCSGMQRDILGHVDGMLKPGGYLVYSTCTFSPEENE 240 Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMD 431 +++ L S P + VP + E R+ P ++ Sbjct: 241 QMIAAFLESHPDYELFEVPKTGGIDDGRPQWSDNNSELKKTARLWPHKIKGE-------- 292 Query: 432 GFFAVALRRL 441 G F L + Sbjct: 293 GHFVALLHKK 302 >gi|119774223|ref|YP_926963.1| Fmu (Sun) [Shewanella amazonensis SB2B] gi|119766723|gb|ABL99293.1| Fmu (Sun) [Shewanella amazonensis SB2B] Length = 454 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 83/458 (18%), Positives = 158/458 (34%), Gaps = 67/458 (14%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI-------DA----- 65 + ++R +L + + +D+ L+R + R+ + DA Sbjct: 28 IFKQREGADRVLANYFREHKKHG--SKDRKLIRETLFGLFRWWGWLKNLPAADDANANIE 85 Query: 66 -------VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 + + + L ++ + D+ + E Sbjct: 86 DSGFSSGLGEAHSPRWFTQLS------LVAAIENHQWQDIRSG----WLSQANLSQLEIP 135 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 F ++ + + A +++P+W E + +++ + C P Sbjct: 136 AFGDTPENLNIICAALIKQFGGEFAPPNLLPDWAWEHISVAGS-DKLAFVDALCRRPPLW 194 Query: 179 DLTVKFDIETWAHKLNA-------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 E +L A + I L ++ ++ + G VQD ++ Sbjct: 195 TRAQGTSREQVLKQLEADDIGAVPSKVFADAIELASQSINLDAVTAYTSGKLEVQDLASQ 254 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------KVTALDVSKRRLEKLRCNLDR 285 ++ D CA GGK+ QL ++ A D+ + LE+L D+ Sbjct: 255 AIGEVAAPKAGERWWDACAGAGGKSLQLFSLMQKRGGVGELVASDIRPKALEELLRRADK 314 Query: 286 LHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + + FD VLVDAPCS TGT RR+PD+ W D I+ Q Sbjct: 315 AGVAPIQLSPWRSDKLPVKADYFDGVLVDAPCSCTGTWRRNPDMRWIDDASAILDKPALQ 374 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L + + V+ GG++V++ CSL + ++E VV+ L + ++ A Sbjct: 375 LDILRRASAAVRSGGVLVYATCSLARAENEAVVEAFLA-----------SDEDFELDTTA 423 Query: 405 MALSPEGW--IRITPDMLEKIDGVSSGMDGFFAVALRR 440 S E + + P DG F +RR Sbjct: 424 HPFSGEHCAVMTLWPQQA--------NADGMFVARMRR 453 >gi|323977982|gb|EGB73068.1| NOL1/NOP2/sun family protein [Escherichia coli TW10509] Length = 479 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|301026587|ref|ZP_07190010.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 69-1] gi|300395420|gb|EFJ78958.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 69-1] Length = 481 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGNLFP---GADKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|170769367|ref|ZP_02903820.1| ribosomal RNA small subunit methyltransferase F [Escherichia albertii TW07627] gi|170121691|gb|EDS90622.1| ribosomal RNA small subunit methyltransferase F [Escherichia albertii TW07627] Length = 479 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ + + S G++++Q+AS+ +PV + Sbjct: 60 YGWTLTPIPWCEEGFWIERSDDDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNSPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + ++ A QR+L+ ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ I P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLF---SGADKALTEEGFLHIFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|300938813|ref|ZP_07153523.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 21-1] gi|300456246|gb|EFK19739.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 21-1] Length = 481 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANICRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTKEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|127512819|ref|YP_001094016.1| Fmu (Sun) domain-containing protein [Shewanella loihica PV-4] gi|126638114|gb|ABO23757.1| Fmu (Sun) domain protein [Shewanella loihica PV-4] Length = 418 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 79/448 (17%), Positives = 149/448 (33%), Gaps = 68/448 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++L+ V+ + L + L+ +Q + + LR L L Sbjct: 24 ELVINVLAMVLEEGKPLDRAYSHHFSGLK---LAPSEQARITYVTGDLLRRLNFYCY-LA 79 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + R L + + + + Sbjct: 80 DISTDEIARMGSRLLN---------------AWHMANELPI--------PKLQYTLAIEE 116 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLT-VKFDI 186 + Q+ A PEW + G + + A Y+ + +K + Sbjct: 117 DDFYQRLEAAKQQAALFDGCPEWLDTLGQEQLGDDWAKERAALAQAPKRYLRVNPLKTNS 176 Query: 187 ETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 E A +L + T + ++ F +G++ QDA + G Sbjct: 177 EDLAKRLAKEGVETREVPGVPSALEVISDAALFRTECFKQGLFEQQDAGSQHVAAAVGAE 236 Query: 241 NNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIE 295 + V+D CA GGK A + ++ A+DV + +L+ L+ R + II Sbjct: 237 PGMRVIDACAGAGGKTLAIAAQMQGKGRLLAMDVEQWKLDNLKQRARRAGAHNVETRIIA 296 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 K D VL+D PCS G ++R+PD W D + QR++L V Sbjct: 297 SSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTPDRLPVLVELQREILQSYSRMV 356 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K GI++++ CS+ Q++ + V L ++P + Sbjct: 357 KVDGILIYATCSIMPQENRQQVDAFLAANPHFSFIDD----------------------- 393 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E + +G DGF+ ++R + Sbjct: 394 -----ETVSVADTGFDGFYLARMKRTAE 416 >gi|331673368|ref|ZP_08374136.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA280] gi|331069566|gb|EGI40953.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA280] Length = 481 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|126737808|ref|ZP_01753538.1| NOL1/NOP2/sun family protein [Roseobacter sp. SK209-2-6] gi|126721201|gb|EBA17905.1| NOL1/NOP2/sun family protein [Roseobacter sp. SK209-2-6] Length = 392 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 84/451 (18%), Positives = 140/451 (31%), Gaps = 75/451 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L ++ S L S F +D+ VR V +LR Sbjct: 1 MTP--AARLQAAIEILDQILV-GKSAEQQLTAWGRRSRFAG--SKDRAAVRDHVFQSLRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + L + LLR + ++ R Sbjct: 56 LRSYAVLGGAKTGRGL------ILGLLR------HKGEDPSAFFTGEGHAPSELTLSERG 103 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178 A +S A IPEW G++ LA + ++ Sbjct: 104 AAGQFSSE---------------AEELDIPEWLWNSFSQSLGQDAPLAAAALQGRAPVHL 148 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIR--------LKELPESIVSLPGFAEGVWWVQDASA 230 + A K A + + + + G+ +QDA++ Sbjct: 149 RVNRLKGTVEAAQKALAEEGIDSAAHPASPWALEVTSNARRLRNSQAYLCGLVELQDAAS 208 Query: 231 SIPVQLFGTLNNLSVLDLC-AAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + + L+VLDLC G A + K+ A D+ ++R++ + R Sbjct: 209 QAVIDVLPLEDGLNVLDLCAGGGGKSLAMAAAAKLKLFAHDIEQKRMKDIPDRAKRAGAR 268 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + P +D VL DAPCS +G+ RR P+ W D + + Q +L Sbjct: 269 IALLATEQLARTGP---YDLVLCDAPCSGSGSWRRAPEGKWNLSRDRLDEIKALQAGILD 325 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 Q + G + ++ CS+ +++E+ VQ L E Sbjct: 326 QATQLISATGTLAYATCSMLAEENEDQVQAFLARHSGWSETA------------------ 367 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K G DGFF L R Sbjct: 368 -----------RKSWKTHEGTDGFFVSVLTR 387 >gi|123446653|ref|XP_001312075.1| NOL1/NOP2/sun family RNA methylase containing protein [Trichomonas vaginalis G3] gi|121893909|gb|EAX99145.1| NOL1/NOP2/sun family putative RNA methylase containing protein [Trichomonas vaginalis G3] Length = 476 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 124/312 (39%), Gaps = 20/312 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGG 202 + E++ + ++ DA + + ++ L+ + G Sbjct: 116 YGYNRYLLEQIASLVPVAEIIDFIDANEHQRPVVIRTNTLRTRRNELERVLSERGVRLGP 175 Query: 203 IRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + I + P + G + +Q S+ +PV + LD+CAAPGG Sbjct: 176 VDKWTKLGLIVYDSQVPIGATPEYLSGHYMIQSPSSFLPVMALNPQPGMRTLDMCAAPGG 235 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT + + + + A D+++ R + L N+ RL + ++ D + FDAV Sbjct: 236 KTTHMAQLMKNQGVIIANDINRTRAQALIANIHRLGVTNTIVVNYDGRAFPTVMGGFDAV 295 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVVFSNCSLD 369 + DAPCS TG I R P V ++ D+ Q++++L + GG + + CSL Sbjct: 296 MCDAPCSGTGVISRDPSVKTSKSEQDLKVLTQNQKEIILHAYDSISSKGGKLCYCTCSLL 355 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVS 427 +++E VV ++ + V +P D+A + P + ++ Sbjct: 356 VEENEAVVDYLINNRKCKV--IPSGLDSDFDQDLAEGIVNYKGHHFHPSVQLSRRVYPHR 413 Query: 428 SGMDGFFAVALR 439 MDGF+ + Sbjct: 414 LNMDGFYFALIE 425 >gi|120599031|ref|YP_963605.1| Fmu (Sun) domain-containing protein [Shewanella sp. W3-18-1] gi|120559124|gb|ABM25051.1| Fmu (Sun) domain protein [Shewanella sp. W3-18-1] Length = 404 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 80/447 (17%), Positives = 138/447 (30%), Gaps = 70/447 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + LR L L Sbjct: 12 ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALVTGDILRRLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + R L A L+ D+ + Sbjct: 68 EISPDEMERYGSKLLN------AWHLFHDLP-----------------LPKMQYSLPVDE 104 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 +R++ + ++ PEW GK A + L Sbjct: 105 QRLAERIEQAKTQLVLWDGCPEWLDTMGREQLGKSW-EKERAALSTAPKRFLRANGLKVT 163 Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + KL A ++ F EG++ QDA + Sbjct: 164 RDELMAKLAAEYVSTLPVDTVNSALEVTSDSALFRTQSFKEGLFEQQDAGSQRVAAALDA 223 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V+D CA GGKT + ++ A+DV + +L+KL+ R Y + Sbjct: 224 KPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAYNVETRLI 283 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 284 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILNSYSRM 343 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GGI+V++ CS+ ++ V L +P + Sbjct: 344 VKVGGILVYATCSIFPCENRGQVDAFLAENPNFRLIED---------------------- 381 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I +G DGF+ + R+ Sbjct: 382 ------ETISPADTGFDGFYLAKIERI 402 >gi|327394137|dbj|BAK11559.1| Sun protein YebU [Pantoea ananatis AJ13355] Length = 372 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 16/205 (7%) Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +SV+D+ AAPG KT Q + + + A + S R++ L N+ R + + DA Sbjct: 15 MSVMDMAAAPGSKTTQIAACMHNRGVILANEFSASRVKVLHANITRCGVTNSALTHFDAR 74 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + P FDA+L+DAPCS G +R+ D L A QR L+ +KP Sbjct: 75 VFGPALPEQFDAILLDAPCSGEGVMRKDADALKNWSLTSTQTIAQTQRDLIESAFHALKP 134 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C+L++ ++++VV +L P VE+ PLN + A +PEG++ + P Sbjct: 135 GGTLVYSTCTLNQIENQQVVAWLLARYPDAVEIAPLNGLF---AGAERAATPEGYLHVFP 191 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 192 HLFDSE--------GFFVACLRKTA 208 >gi|134093422|ref|YP_001098497.1| putative S-adenosyl-L-methionine-dependent RNA methyltransferase [Herminiimonas arsenicoxydans] Length = 449 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 191/450 (42%), Gaps = 52/450 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ ++ V + I+L L + A + + + ++ I +R + R +A+L+ + Sbjct: 29 AAQAVADV-GRGIALPQSLARIF---AQTNATPQARGAIQDISYHCMRHIGRAEALLNAM 84 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-------YLDVADYAVVDLAVEQAKRDKENRHFAKL 123 L LL ++A I + + VVD AV A D + H + Sbjct: 85 TTKQTE--PPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAAADTDMAHAKGM 142 Query: 124 VNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 VN+ILRR RE+ L++ AG P+W+ +R+ + Y ++ AI +A + + Sbjct: 143 VNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDW-QAILEAGNAAPPLT 201 Query: 180 LTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 L V A + A L P + +PGF++G+ VQDA+A + Sbjct: 202 LRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAAAQL 261 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA- 290 L + + VLD CAAPGGK+ ++ + ++TALD +RRL ++ NL RL L A Sbjct: 262 AAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQLNAS 321 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + K F+ +L D PC+++G +RRHPD+ W R D V+ A ++L Sbjct: 322 LLVGDATGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQILDN 381 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ G ++F CSL Q+SE + P Sbjct: 382 LWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNRAIRLPAPG----------------- 424 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P DG F ++ Sbjct: 425 ---QLLP-----TANAEDDHDGLFYALFQK 446 >gi|218510626|ref|ZP_03508504.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein [Rhizobium etli Brasil 5] Length = 418 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 77/445 (17%), Positives = 144/445 (32%), Gaps = 45/445 (10%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L+ + ++ + L F D+ + IV LR ++D Sbjct: 1 MLADIDARKRPVADALKDWGLAHRFAG--SGDRAAIGNIVYDALRMRLSHAWLMDD---- 54 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 ++ A +++ + + Sbjct: 55 --DSAAAIAHAVM-------------FRQWGFTPDRLAAELADDKFAPPPLAADALAAFA 99 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 + IPEW + E +G + A + +DL + + Sbjct: 100 GRSLDDAPPHIRGDIPEWIQPSFEQAFGAGWLAEA-QALAARPTLDLRANILKASRDKAV 158 Query: 194 NAVMLPTGGIRLKELPE-------------SIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 A+ ++ + F +G + VQD + I L Sbjct: 159 KALERAGAHAAKIARYGIRIAAGEGASRLPNVTAELSFQKGWFEVQDEGSQIVADLVLAK 218 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + +LD CA GGKT + + + +V A D ++RL + L R + + Sbjct: 219 DGEQILDYCAGGGGKTLAMAAAMQNKGQVHAYDADRKRLAPIIERLKRAGTRNVQVHDDA 278 Query: 298 AFDYCPKKLFD-AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + P + PC+ TGT RR PD W ++ + Q+ L Q FVK Sbjct: 279 RGLFGPCRALRQRCWSMRPCTGTGTWRRRPDTKWRLTAKNLDERTAQQQDALAQASGFVK 338 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +++ CS+ Q++EE V++ +P + L + A + + Sbjct: 339 PGGELIYVTCSVLPQENEEQVRRFTTGNPDFQIVSALPAWDALFGKDAPRPHSCDALTV- 397 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 + S+ DGFF ++R Sbjct: 398 -----TLTPASTDTDGFFFCRMQRK 417 >gi|114319781|ref|YP_741464.1| Fmu (Sun) domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226175|gb|ABI55974.1| Fmu (Sun) domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 474 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 14/306 (4%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201 ++ +W + A I+ + + V Sbjct: 11 FRYRDVVDDWPAFETAVASPLPATIWAHPARITREALR----SLLAEAGIDARPVAWQPS 66 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI- 260 +RL G A G++ Q+ ++ +PV L VLDLCAAPG KTAQ Sbjct: 67 ALRLPAGLRPGAHW-GQAAGLYHAQEEASMVPVTLLDPQPGHRVLDLCAAPGNKTAQAAL 125 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCS 317 + V A DV+K RL +R + RL L + A DY P FD V+ D PCS Sbjct: 126 ALGNRGTVVANDVAKGRLAAIRHLIKRLGLMNVSVTCRPAQDYSPHAGGFDRVIADVPCS 185 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 GT+R+ + + Q +L + + +PGG +V+S C+ +++E+VV Sbjct: 186 CEGTVRKSSQPSAQALCETRERLVARQTAILDKAVRLCRPGGRIVYSTCTFAPEENEQVV 245 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFA 435 +LR P + L+P++ + +A L+ P++ + ++ + GFF Sbjct: 246 DALLRRYPDELRLLPVS---LPGLYLAPGLTGWRGRTFLPELAQAVRLWPHHNNTGGFFI 302 Query: 436 VALRRL 441 L R+ Sbjct: 303 ALLERV 308 >gi|194467993|ref|ZP_03073979.1| Fmu (Sun) domain protein [Lactobacillus reuteri 100-23] gi|194452846|gb|EDX41744.1| Fmu (Sun) domain protein [Lactobacillus reuteri 100-23] Length = 457 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 115/304 (37%), Gaps = 20/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISD-ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 +P F + + G E +S A S + + A A Sbjct: 1 MQLPNEFVTKYKKLMGTEADEFLSALAQSSYSGFRENPLKNGQPVATIEKATGKVPYVPT 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + SL G + Q+ SA ++ VLDLCAAPGGKT + Sbjct: 61 GYYGQVNGKSLDHV-TGWVYSQEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTHLIAKMN 119 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319 + + A ++ +R + L NL+R + D + FD +LVDAPCS Sbjct: 120 NQGLLIANEIFPKRAKILAENLERWGAKNAVVTSESPADLEKQFPQYFDRILVDAPCSGE 179 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P + + + A Q+K+L + +KPGG +V+S C+ ++ E+ + Sbjct: 180 GMFRKEPAGIEYWSPEYPAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEEDEQNISW 239 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFA 435 +L + P ++L+P+ A +R+ P L+ G F Sbjct: 240 LLNNYP-DLKLIPIEKATGMDDGRPEWADGNEELKKTVRLFPHHLKGE--------GHFI 290 Query: 436 VALR 439 L Sbjct: 291 AKLV 294 >gi|283795445|ref|ZP_06344598.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1] gi|291077106|gb|EFE14470.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1] Length = 489 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 20/269 (7%) Query: 184 FDIETWAHKLNAVM---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 D E + + + + P GV+++Q+ SA V L Sbjct: 41 TDRERFREETEFSLKPIPWAEEGYYYGAKDRPGRHPYHEAGVYYIQEPSAMAVVSLLDPK 100 Query: 241 NNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLDLCAAPGGKT+ + + + ++ R L N +R+ + + D Sbjct: 101 PGDRVLDLCAAPGGKTSHIASRLQGKGFLLSNEIHPARARILSQNAERMGIANGAVFNED 160 Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + FD ++VDAPCS G R+ D + A Q ++L + + Sbjct: 161 SARLSAAFPEYFDKIVVDAPCSGEGMFRKDEGARAEWSPDKVRLCAQRQAEILENASAML 220 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEG 411 KPGG + +S C+ ++ E+ V+ L++ P V+ P S + Sbjct: 221 KPGGTMAYSTCTFSPEEDEQAVEAFLKAHPEFKIKKVKKYPGMSDGVPGWALEGREELSC 280 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +RI P +G +G F L + Sbjct: 281 AVRIWPH--------RTGGEGHFIAILEK 301 >gi|325497021|gb|EGC94880.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia fergusonii ECD227] Length = 479 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 T+ L + G ++ E + S G++++Q+AS+ +PV Sbjct: 58 ATYNWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 117 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 118 PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG 177 Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ Sbjct: 178 RVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR 237 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+++++E V + + P VE +PL + + AL+ EG++ + Sbjct: 238 PGGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGNLFP---GANKALTEEGFLHVF 294 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF LR+ Sbjct: 295 PQIYDCE--------GFFVARLRK 310 >gi|225679156|gb|EEH17440.1| Yna1p [Paracoccidioides brasiliensis Pb03] Length = 664 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 146/366 (39%), Gaps = 43/366 (11%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q+L + + + + + + + A N +L + + Sbjct: 227 QLLRSRI--MESIRILSDLSTLGQTGKSRADYTNLLLADICTY-----------YGYTPF 273 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTGGIRLKEL 208 E+L N + A +A SP + + ++ + + A L + + Sbjct: 274 LAEKLFNLFPPREAFAFFEANESPRPVVIRTNTLRTNRRSLAQALINRGVVLEPVGKWSK 333 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + + P + G + +Q AS+ +PV N +LD+ AAPGG Sbjct: 334 VGLQVFESSVPLGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMAAAPGG------ 387 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSS 318 V A D SK R + L N+ RL + +DA + PK FD +L+DAPCS Sbjct: 388 ----CVLANDASKHRAKGLIGNIHRLGCKNTIVSHLDAREAFPKILGGFDRILLDAPCSG 443 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSE 374 TG I + P V ++ D + Q++LLL I K GG +V+S CS+ +++E Sbjct: 444 TGVISKDPSVKTSKTERDFLALPHMQKQLLLAAIDSTDHASKTGGYIVYSTCSVTVEENE 503 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 VVQ LR P V++V + + + + ++ + + +DGF+ Sbjct: 504 GVVQYALRKRPN-VKIVDTGLGNFGTPGFKSYMGKKFDEKM--ALTRRYYPHRENVDGFY 560 Query: 435 AVALRR 440 L++ Sbjct: 561 VCKLKK 566 >gi|225389450|ref|ZP_03759174.1| hypothetical protein CLOSTASPAR_03198 [Clostridium asparagiforme DSM 15981] gi|225044485|gb|EEG54731.1| hypothetical protein CLOSTASPAR_03198 [Clostridium asparagiforme DSM 15981] Length = 495 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 101/263 (38%), Gaps = 23/263 (8%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + P G +++Q+ SA V+L + VLDLCAAPGGKT Sbjct: 76 PWVRDGFYYREEDRPGKHPYHEAGAYYIQEPSAMAVVELADPIPGDRVLDLCAAPGGKTT 135 Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 + + + ++ R + L N++R+ + + P+ FD ++V Sbjct: 136 HIASRLKGKGFLLSNEIHPARAKILSQNVERMGVQNAVVTNEAPERLSPRFPEFFDKIVV 195 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P D + A Q +L Q +KPGG +V+S C+ ++ Sbjct: 196 DAPCSGEGMFRKDPQAADQWSPDHVAMCAARQGDILDQAAGMLKPGGRMVYSTCTFAPEE 255 Query: 373 SEEVVQKVLRSSPIP-------VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKI 423 +E V L P E W +D L + R+ P LE Sbjct: 256 NEGTVLHFLERHPDFEVEAVNGYEGFDCGKPRWAGVDPETDLGRQLARTFRLFPHRLEGE 315 Query: 424 DGVSSGMDGFFAVALRRLIQ-PK 445 G + L++ + P+ Sbjct: 316 --------GHYMAVLKKRGEAPE 330 >gi|110641953|ref|YP_669683.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 536] gi|110343545|gb|ABG69782.1| hypothetical protein YebU [Escherichia coli 536] Length = 481 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + L + G ++ E + S G++++Q+AS+ +PV N Sbjct: 62 YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|146292898|ref|YP_001183322.1| Fmu (Sun) domain-containing protein [Shewanella putrefaciens CN-32] gi|145564588|gb|ABP75523.1| Fmu (Sun) domain protein [Shewanella putrefaciens CN-32] Length = 404 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 79/447 (17%), Positives = 138/447 (30%), Gaps = 70/447 (15%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + +L+ V+ + L + L +Q + + LR L L Sbjct: 12 ELVISILTMVLSQGKPLDRAYSQHFS---GLQLVPAEQARIALVTGDILRRLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + R L A L+ D+ + Sbjct: 68 EISPDEMERYGSKLLN------AWHLFHDLP-----------------LPKMQYSLPVDE 104 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 +R++ + ++ PEW GK A + L Sbjct: 105 QRLAERIEQAKTQLVLWDGCPEWLDTMGREQLGKSW-EKERAALSTAPKRFLRANGLKVT 163 Query: 186 IETWAHKLNAVM------LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + KL A ++ F +G++ QDA + Sbjct: 164 RDELMAKLAAEYVSTLPVDTVNSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALDA 223 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-- 294 + V+D CA GGKT + ++ A+DV + +L+KL+ R Y + Sbjct: 224 KPGMKVIDACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAYNVETRLI 283 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 K D VL+D PCS G ++R+PD W + + Q+ +L Sbjct: 284 ASSKTIKRLKLSADRVLLDVPCSGLGVLKRNPDAKWRDTAERLPVLMELQKHILNSYSRM 343 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VK GGI+V++ CS+ ++ V L +P + Sbjct: 344 VKVGGILVYATCSIFPCENRGQVDAFLAENPNFRLIED---------------------- 381 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 E I +G DGF+ + R+ Sbjct: 382 ------ETISPADTGFDGFYLAKIERI 402 >gi|222033584|emb|CAP76325.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli LF82] gi|312946433|gb|ADR27260.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O83:H1 str. NRG 857C] Length = 481 Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|193222202|emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas arsenicoxydans] Length = 453 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 111/450 (24%), Positives = 191/450 (42%), Gaps = 52/450 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ ++ V + I+L L + A + + + ++ I +R + R +A+L+ + Sbjct: 33 AAQAVADV-GRGIALPQSLARIF---AQTNATPQARGAIQDISYHCMRHIGRAEALLNAM 88 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-------YLDVADYAVVDLAVEQAKRDKENRHFAKL 123 L LL ++A I + + VVD AV A D + H + Sbjct: 89 TTKQTE--PPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAAADTDMAHAKGM 146 Query: 124 VNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 VN+ILRR RE+ L++ AG P+W+ +R+ + Y ++ AI +A + + Sbjct: 147 VNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDW-QAILEAGNAAPPLT 205 Query: 180 LTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 L V A + A L P + +PGF++G+ VQDA+A + Sbjct: 206 LRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGLVSVQDAAAQL 265 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYA- 290 L + + VLD CAAPGGK+ ++ + ++TALD +RRL ++ NL RL L A Sbjct: 266 AAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITENLQRLQLNAS 325 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + + K F+ +L D PC+++G +RRHPD+ W R D V+ A ++L Sbjct: 326 LLVGDATGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQLAAISAQILDN 385 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 ++ G ++F CSL Q+SE + P Sbjct: 386 LWQMLQADGKLLFVTCSLWPQESEAQAAAFAVRNRAIRLPAPG----------------- 428 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P DG F ++ Sbjct: 429 ---QLLP-----TANAEDDHDGLFYALFQK 450 >gi|312129034|ref|YP_003996374.1| fmu (sun) domain protein [Leadbetterella byssophila DSM 17132] gi|311905580|gb|ADQ16021.1| Fmu (Sun) domain protein [Leadbetterella byssophila DSM 17132] Length = 395 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 78/443 (17%), Positives = 144/443 (32%), Gaps = 75/443 (16%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L K+ + +L RD+ V +R I +L Sbjct: 15 LEALQSAETKK--VDHVLPALLKAQPKWG--SRDRNFVAENTYEVVRNKRFIQFLLGG-- 68 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + IL ++ + V Sbjct: 69 DATPSKM---------LGAWLIL-------------------KGLYDPEEEIFRYLDPEV 100 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIET 188 ++ + +P+ +R + G +R ++A + L V + Sbjct: 101 IQDNARSDMPLEIRFSLPDELSQRAKRELGDDRWAKEAEAMHGQAPVYLRVNERWITRDK 160 Query: 189 WAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L + + + + L + +G + +QDA + Sbjct: 161 LVSVLLSKDIAVEPVASVPSAIKVLKRAGLNQLEEYKKGFFEIQDAGSQEIAHFLDPQAG 220 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 ++D CA GGKT L + AK+ ALDV + +LE+L R + + + Sbjct: 221 EFIVDTCAGAGGKTLHLADLSRNKAKILALDVEEGKLEELEKRAARNRVSQVETSLWNND 280 Query: 300 DYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + DAVL+D PCS G +RR+PD I Q ++L + + V+ G Sbjct: 281 ILDQYRGQADAVLMDVPCSGLGVLRRNPDAKELLTEAYIDSIRDVQAEILQKYSALVRKG 340 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V++ CSL ++E V++ L + EL+ +I P Sbjct: 341 GRLVYATCSLLPSENEGQVKRFLENH-GDFELI-------------------KDKQIWPS 380 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + DGF+ LR+ Sbjct: 381 --------ETDFDGFYMALLRKK 395 >gi|148544131|ref|YP_001271501.1| Fmu (Sun) domain-containing protein [Lactobacillus reuteri DSM 20016] gi|184153502|ref|YP_001841843.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227364558|ref|ZP_03848619.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|325682327|ref|ZP_08161844.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri MM4-1A] gi|148531165|gb|ABQ83164.1| Fmu (Sun) domain protein [Lactobacillus reuteri DSM 20016] gi|183224846|dbj|BAG25363.1| putative rRNA methylase [Lactobacillus reuteri JCM 1112] gi|227070395|gb|EEI08757.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri MM2-3] gi|324978166|gb|EGC15116.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri MM4-1A] Length = 455 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 115/310 (37%), Gaps = 32/310 (10%) Query: 146 SIIPEWFKERLENFYGKERVLAI-------SDACISPLYIDLTVKFDIETWAHKLNAVML 198 +P F + + G E + + IE K+ V Sbjct: 1 MQLPNEFVTKYKKLMGAEADEFLSALAQSSYSGFRENPLKNGQPVATIEKATEKVPYVPT 60 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 G + + + G + Q+ SA ++ VLDLCAAPGGKT Sbjct: 61 GYYGQVNGKSLDHVT-------GWVYSQEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTH 113 Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVD 313 + + + A ++ +R + L NL+R + D + FD +LVD Sbjct: 114 LIAKMNNQGLLVANEIFPKRAKILAENLERWGAKNAVVTSESPADLEKQFPQYFDRILVD 173 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ P + + + A Q+K+L + +KPGG +V+S C+ ++ Sbjct: 174 APCSGEGMFRKEPAGIEYWSPEYPAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEED 233 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSG 429 E+ + +L S P ++L+P+ A +R+ P L+ Sbjct: 234 EQNISWLLNSYP-DLKLIPIEKASGMDDGRPEWADGNEELKKTVRLFPHHLKGE------ 286 Query: 430 MDGFFAVALR 439 G F L Sbjct: 287 --GHFIAKLV 294 >gi|146325692|sp|Q0TGZ7|RSMF_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + L + G ++ E + S G++++Q+AS+ +PV N Sbjct: 60 YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|300982043|ref|ZP_07175862.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 200-1] gi|300307345|gb|EFJ61865.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 200-1] gi|324011607|gb|EGB80826.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 60-1] Length = 481 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|117619085|ref|YP_855944.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560492|gb|ABK37440.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 437 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 56/421 (13%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLL-------RVSVA------QIL 94 LV AIV+ L +D + + + L R+S+ Q+ Sbjct: 47 LVVAIVDDVLGQGLTLDRAYARHFSGIELKPQEQARIALVTGDLLRRLSLYCALTGIQVR 106 Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 + + ++ K + N N R + + + + P W ++ Sbjct: 107 QAEKNVWPLLHSWHAFHKIAQPNHPTLDRFNEEAFRRRLTEAKKNPVL--MDGCPTWLEK 164 Query: 155 RLENFYGKER-VLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT------GGIRLK 206 G+ + A + Y+ + +K E L + T Sbjct: 165 LGSEQLGEAWPAERAALAWMPKRYLRVNSLKCTREELQAALAKEQVTTIPVEGVDSALQV 224 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263 ++ FA+G + QDA + + V+D CA GGKT ++ Sbjct: 225 TSDAALFRTKAFADGWFEQQDAGSQQVAAALEVSPGMRVIDACAGAGGKTLHLAAMMEGK 284 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 ++ A+DV + +LE L+ R + +I K+ D VL+D PCS G Sbjct: 285 GRLLAMDVEEWKLENLKQRARRAGAHNVETRVITSSKTVKRLKESADRVLLDVPCSGLGV 344 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 ++R+PD W + + Q ++L + VK GG++V++ CS+ +++ + V K L Sbjct: 345 LKRNPDAKWRDTAERLPVLVALQAEILQRYSQMVKVGGLLVYATCSILPEENRQQVDKFL 404 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ R+ D + ++G DGF+ + R+ Sbjct: 405 AANEN--------------------------YRLRDDH--TVSPAATGFDGFYMARIERI 436 Query: 442 I 442 Sbjct: 437 A 437 >gi|226329513|ref|ZP_03805031.1| hypothetical protein PROPEN_03422 [Proteus penneri ATCC 35198] gi|225202699|gb|EEG85053.1| hypothetical protein PROPEN_03422 [Proteus penneri ATCC 35198] Length = 206 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 34/232 (14%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVS 272 LPGFA+G VQD SA +L N +LDLCAAPGGKT I A+V A+D+ Sbjct: 4 LPGFADGWVTVQDRSAQRCAELLAPENKEQILDLCAAPGGKTTHILEIAPQAQVLAIDID 63 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 ++RL++++ NL RL L A + D +C FD +L+DAPCS+TG IRRHPD+ Sbjct: 64 EQRLKRVKENLTRLKLNAV-VKSGDGRYPEKWCAGMQFDRILLDAPCSATGVIRRHPDIK 122 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 W R DDI + A Q+++L ++K GG +V++ CS+ +++++ ++ L S+ Sbjct: 123 WLRRNDDIEQLAQIQKEILHAIWPYLKSGGTLVYATCSILPEENKQQIEAFLASTKDAQC 182 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D + G DGFF ++++ Sbjct: 183 ----------------------------DYQHQCLPEEEGGDGFFYALIKKI 206 >gi|77464024|ref|YP_353528.1| NOL1/NOP2/sun family protein [Rhodobacter sphaeroides 2.4.1] gi|77388442|gb|ABA79627.1| possible NOL1/NOP2/sun family protein [Rhodobacter sphaeroides 2.4.1] Length = 387 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 87/451 (19%), Positives = 143/451 (31%), Gaps = 77/451 (17%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L ++ L S F D+ VR +V LR Sbjct: 1 MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + LR++ + + A Sbjct: 56 RRSFARAGGAETGRGL------VLGGLRMAGQE--------VGDLFTGEGHAPAPPAGSE 101 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYI 178 + L + P+W L + G + + +P+++ Sbjct: 102 LKPQAPAELEALD---------------CPDWLAPALRDSLGADFAPVMEALRHRAPVFL 146 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASA 230 + + D A +L A + T L E + P + EG +QDA++ Sbjct: 147 RVNLARTDRAAAAAELAAEGIVTQPHPLAETALEVTENPRRLQASAAYREGRVELQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289 V VLD CA GGK+ + A D RR+ L R + Sbjct: 207 QAIVAALPLAPGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGVK 266 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D P FD VL D PCS +G+ RR P+ W+ + + + Q +L Sbjct: 267 VRRLAPGDPARRGP---FDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILD 323 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + V+PGG + ++ CSL ++ + L + + Sbjct: 324 EVAPLVRPGGHLAYATCSLLASENAGQTEAFLERTSGWTRV------------------- 364 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+TP G DGFF L+R Sbjct: 365 -HQLRLTP---------LDGGDGFFLDLLQR 385 >gi|315299940|gb|EFU59178.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 16-3] Length = 481 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|260868356|ref|YP_003234758.1| putative methyltransferase [Escherichia coli O111:H- str. 11128] gi|257764712|dbj|BAI36207.1| predicted methyltransferase [Escherichia coli O111:H- str. 11128] Length = 481 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL+ + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLDDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|332089959|gb|EGI95059.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii 5216-82] Length = 325 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|191172977|ref|ZP_03034511.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli F11] gi|190906688|gb|EDV66293.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli F11] Length = 479 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERYNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626] gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626] Length = 480 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 164/456 (35%), Gaps = 47/456 (10%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVS 89 D +L ++D+ L ++ ++ + +D VL L + L+ LR++ Sbjct: 27 DFLRTSHRMDVLGEKDRALATRLLLGSVSAVGELDRVLASYLPKR-RHLEPKLRDALRLA 85 Query: 90 VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA------ 143 +ILYL + V VE A+R + L N+ILRR++ + + + Sbjct: 86 TFEILYLHTPKHVAVSQGVEMARR--ASAQATGLANAILRRIATDVSPRVDKAYARLRAG 143 Query: 144 ----------GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI-ETWAHK 192 +S P+W ++L G + + P + + ++ + + Sbjct: 144 NDECLLEDLVCVSGQPDWLCQKLVASMGVSVATPLLLHVLEPAPVYVALREGLSQDVLSA 203 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + E P + + A D S+ + L + ++L++ Sbjct: 204 FDPYTSIAPQSFFLESPAGLAASDLVARAKVLPADISSQLVALLALSGREKTLLEIGQGR 263 Query: 253 GGKTAQLIVSGA------KVTALDVSKRRLEKLRCNLDRLHLYAEDII------------ 294 G KT L + A +TA+D+ +++E R L + + Sbjct: 264 GTKTILLQQNAALLNHVLHITAIDIDPQKVEIARKRLVEAAVDNQVTSVVFNAAELGARE 323 Query: 295 -EMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT---DDIVKSACFQRKL 347 + P FD V +DAPCS GT+RRHP++ W+ D Q+ + Sbjct: 324 ANSEPPCKLPGELAHTFDTVFIDAPCSGAGTLRRHPEIGWSLDEGAVCSDGILPKVQKDI 383 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPL-NSAYWKSIDMAM 405 L+ V G +V++ CS ++ E VV+ L E + SA +K + A Sbjct: 384 LVAASRKVAAHGTLVYATCSPLYEEDEAVVEAFLATEEGSSFEPEDIVESAVFKLLSDAG 443 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + T D F LRR+ Sbjct: 444 KQVVQKAQTKTGYAHFGYQLDILDADQHFLAKLRRI 479 >gi|170683942|ref|YP_001743410.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli SMS-3-5] gi|170521660|gb|ACB19838.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli SMS-3-5] Length = 481 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|323186840|gb|EFZ72159.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli RN587/1] Length = 479 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|324007208|gb|EGB76427.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 57-2] Length = 481 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|221056324|ref|XP_002259300.1| methyltransferase [Plasmodium knowlesi strain H] gi|193809371|emb|CAQ40073.1| methyltransferase, putative [Plasmodium knowlesi strain H] Length = 641 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 75/315 (23%), Positives = 126/315 (40%), Gaps = 22/315 (6%) Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKL--- 193 E + L + + + + P I L VK + + L Sbjct: 218 FYYTYFYEYSEELIKYLYYLFDLKELYWFLEMNNLPKEIHLRTNTVKITRKNLMNILKSQ 277 Query: 194 -----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 GI + ++ ++ SL + G + +Q AS+ IPV + +VLD+ Sbjct: 278 NINAEEGENWNNVGIVINDVNSNVGSLNEYMYGYYMIQSASSLIPVLELNVQPDDTVLDM 337 Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCP 303 CAAPGGK + + V A D++K R + + N R+ ++ I D Sbjct: 338 CAAPGGKCTFICALQKNRGFVYANDINKMRCKAIEANASRMGIHNLVITSFDALKVGQKW 397 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 LFD +++DAPCS TG + ++ + +I + A QRKLL IS VK GGIVV+ Sbjct: 398 NFLFDKIILDAPCSGTGVVNKNKGAR-RKTLKEIRELAQKQRKLLNNAISLVKNGGIVVY 456 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS+ +++E+V+ +L+ + + + + +I Sbjct: 457 STCSITVEENEQVINYILKKRDVNILPLDTQIGDPGITHYRKKEFSSKV-----SLCRRI 511 Query: 424 DGVSSGMDGFFAVAL 438 D FF L Sbjct: 512 YLHKHNYDNFFVAKL 526 >gi|299753547|ref|XP_001833346.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea okayama7#130] gi|298410351|gb|EAU88451.2| tRNA (cytosine-5-)-methyltransferase NSUN2 [Coprinopsis cinerea okayama7#130] Length = 576 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 20/314 (6%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 L +R+ + E+L + + +A + + A Sbjct: 207 HTLQRRMPSYYGYNYYLAEKLFLLFPVAEAIEFFEANEVSRPVTIRTNTLRTRRRDLAQA 266 Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 ++ + P + G + +Q AS+ +PV N VLD+ +APGGK Sbjct: 267 LINRGSSKVPSPSC----ATPEYLAGHYMLQAASSFLPVIALSPQPNERVLDMASAPGGK 322 Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311 T + + + + A D +K R + L N+ RL + D ++ FD +L Sbjct: 323 TTHMAALMQNTGVIFANDANKARTKSLTANVHRLGCKNVVVCSYDGREFPKVMGGFDRIL 382 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCS 367 +DAPCS TG I + V + D + + Q++L+L I V K GG V+S CS Sbjct: 383 LDAPCSGTGVISKDSSVKVNKSDRDFILLSHLQKQLILCAIDSVSPDSKTGGYFVYSTCS 442 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDG 425 + +++E VV L+ P V LV ++ + + P + + Sbjct: 443 VTVEENEAVVDYALKKRPN-VRLVDTGLSFGR-----EGFTQYRGKTFHPSVKLTRRFYP 496 Query: 426 VSSGMDGFFAVALR 439 MDGF+ + Sbjct: 497 HVHNMDGFYVAKFK 510 >gi|323180615|gb|EFZ66160.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli 1180] Length = 479 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL+ + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLDDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|218689772|ref|YP_002397984.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli ED1a] gi|254766865|sp|B7MVW5|RSMF_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218427336|emb|CAR08231.2| putative RNA AdoMet-dependent methyltransferase [Escherichia coli ED1a] Length = 479 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|110805371|ref|YP_688891.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella flexneri 5 str. 8401] gi|110614919|gb|ABF03586.1| putative nucleolar proteins [Shigella flexneri 5 str. 8401] Length = 481 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S ++ L N+ R + + Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 181 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|85374245|ref|YP_458307.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis HTCC2594] gi|84787328|gb|ABC63510.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis HTCC2594] Length = 393 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 142/453 (31%), Gaps = 81/453 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMR----KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + +L V+ + ++ ++ + +D+ VR Sbjct: 1 MTP--AARVQAAIDILDRVIDAARSEGAPADRIIADWARNNRYAG--SKDRRAVR----- 51 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +++Y + V A Sbjct: 52 ------------------------------------ELVYSAIRICGEVPETGRAALLAL 75 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + + E+I + +A I P W E L + +A + Sbjct: 76 AEEDTSLRECFDGSQYGPERIGEEEGVASRGIAPGWLTEALAHSGVSHE---EREALLGR 132 Query: 176 LYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 +D+ + ET + L + P + +G VQD + + Sbjct: 133 APLDIRINTLKASTETVELPQDGEPLALPNALRFASGTQVEQWPAYRDGKIEVQDLGSQL 192 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + +VLDLCA GGKT A + ++ A D RR +L +R Sbjct: 193 ACRAADARPGETVLDLCAGAGGKTLALAASMELRGRLIASDTDLRRGRQLLPRAERAGAA 252 Query: 290 AEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + +D D VLVDAPCS TGT RR P+ W + + A Q Sbjct: 253 GIETRLLDPGRELEVLGDLTGQVDCVLVDAPCSGTGTWRRKPEAKWRLTPHALQRYADLQ 312 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 LL VKPGG VVF CSL + + + L + +P ++ Sbjct: 313 DHLLDVAARLVKPGGRVVFVTCSLLDAEGPDRFEAFLVGNSRWEADIP---------ELP 363 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + IR++P G DGFF Sbjct: 364 LGRQRGKGIRLSP--------FHDGTDGFFIAR 388 >gi|257096807|sp|B1LD37|RSMF_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|91793095|ref|YP_562746.1| Fmu (Sun) [Shewanella denitrificans OS217] gi|91715097|gb|ABE55023.1| Fmu (Sun) [Shewanella denitrificans OS217] Length = 404 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 79/442 (17%), Positives = 147/442 (33%), Gaps = 56/442 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + ++LS V+ + L + L +Q V +V LR L L Sbjct: 12 ELVINILSMVLSQHKPLDRAYSQHFS---GLTLPPSEQARVTQVVGDILRKLNLYCY-LA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + R L I + L++ + A + +L ++ Sbjct: 68 DIQPEEFERLGSKLLN-----AWHIFHGLELPNMQ-------YALQVNLEDFETRLAHAK 115 Query: 128 LRRVSREKIELLQRIAGISIIPE-WFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 + + G + + W ER +R + +++ + + + Sbjct: 116 TQAPLWDGCPQWLDELGSEQLGDAWPLERAALSLAPKRFIRVNELKCTKAQL-----IER 170 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + ++ F G + QDA + + + V+ Sbjct: 171 LAKEAVEAIEVEGVDSALEVISDSALFRTETFKAGWFEQQDAGSQLVAAALDAKPGMRVV 230 Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDY 301 D CA GGKT + ++ A+DV + +L+ L+ R + II Sbjct: 231 DACAGAGGKTLHIAAQMQGKGRLLAMDVEQWKLDNLKIRARRAGAHNVETRIIASSKTIK 290 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 K D VL+D PCS G ++R+PD W + + Q+++L VK GI+ Sbjct: 291 RMKLTADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPILMALQKQILQSYSRMVKVDGIL 350 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CS+ ++ V L +P V L+ N Sbjct: 351 VYATCSIMPAENRLQVDAFLAENPQFVLLMDEN--------------------------- 383 Query: 422 KIDGVSSGMDGFFAVALRRLIQ 443 I SG DGF+ ++R+ + Sbjct: 384 -ITVADSGFDGFYLAKMQRVSE 404 >gi|156121251|ref|NP_001095773.1| NOL1/NOP2/Sun domain family, member 5 [Bos taurus] gi|151556204|gb|AAI49961.1| NSUN5 protein [Bos taurus] gi|296472990|gb|DAA15105.1| NOL1/NOP2/Sun domain family, member 5 [Bos taurus] Length = 462 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 87/455 (19%), Positives = 175/455 (38%), Gaps = 42/455 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 M ++ +L+ V ++ SL + + + + A+V T R+ + Sbjct: 1 MAVYSAAAAVLAGVESRQGSLKGLVYASNFQNVKQ----------LYALVCETQRYSAVL 50 Query: 64 DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD--KENRHF 120 DAV+ L+ + + + L ++L V +L L +R + Sbjct: 51 DAVIANAGLLRAEKKLRPHLAKVL---VYDLL-LGKGFRGRGGRWKPLLERHQARLKAEL 106 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 A+L + + +E+ + S +P + + + ++ + S Sbjct: 107 ARLKVRQGVSRNEDLLEVGSKPGSASQVPRFVRVNILKTCAEDAIDYFKRQGFSYQG-RA 165 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + DI K + + + + + P + G +QD ++ +P L Sbjct: 166 SSLNDIRALKGKCFLLDPLLPELLVFPAQTDLHNHPLYQAGHLILQDKASCLPAMLLAPP 225 Query: 241 NNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 V+D CAAPG KT+ L + K+ A D +RL + L R + ++ E D Sbjct: 226 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDQDAKRLASMATLLARAGVSCCELAEQD 285 Query: 298 AFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQG 351 P +L+D CS +G R + + + + A FQ++ L Sbjct: 286 FLAVSPSDQRYCQVQYILLDPSCSGSGMPSRQLEEPKSCTPSPERLRALAAFQQRALSHA 345 Query: 352 ISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 ++F ++ +V+S CS+ ++++E+VV+ L+ SP L P+ + W ++ Sbjct: 346 LTFPALR---RLVYSTCSVCQEENEDVVRAALQQSPGAFRLAPVLPS-WPHRGLSAFPGA 401 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 E +R +P+ GFF L R+ +P Sbjct: 402 EHCLRASPETTL--------TGGFFIAVLERVEEP 428 >gi|254443830|ref|ZP_05057306.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235] gi|198258138|gb|EDY82446.1| NOL1/NOP2/sun family protein [Verrucomicrobiae bacterium DG1235] Length = 419 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 103/452 (22%), Positives = 159/452 (35%), Gaps = 62/452 (13%) Query: 5 MNARLVSSHLLSC---VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 N R +S L+ +++ T L + +D+ L R ++ LR+LP Sbjct: 16 HNQRRISYSLIERSRTLLQPGTPFTRELHELFRS--QGKFGSKDRRLYRELIYTYLRYLP 73 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + Q ++D ++ LA A+ Sbjct: 74 WLDPIYKE----------------------QQKFMDT----LICLAAPTAEIQSLYPTLP 107 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI------SDACISP 175 + R K+ + ++P+WF + +L + Sbjct: 108 DKQPPEIPADQRFKLLGREAHEISELLPDWFGKHTNRPVSSRSLLHLLTRPPLWLRVQKD 167 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIP 233 DL + + + P + LP F EG+ +QD S+ I Sbjct: 168 PNNDLLAQLRAAATPEQAEQITKHPLIPDCIHAPADFSLGELPCFLEGLVEIQDISSQIL 227 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 +QL + LD CA GGKT QL KV A D + +L+ L R L Sbjct: 228 LQLLKDRPTGNWLDACAGAGGKTLQLAKALQPSGKVAAYDPRPSAIRELQSRLKRSGLRN 287 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 ++ + +D VLVDAPCS +GT RRHP +L D++K A Q +L Sbjct: 288 ASVL----DRRPTEGAYDGVLVDAPCSGSGTWRRHPYLLRQTRERDVLKYAETQLDILKN 343 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 V GGI+V+S CSL + ++EEV QK L S P + PL S Y Sbjct: 344 YAPLVAQGGILVYSTCSLSRHENEEVAQKFLESRP-EFQRQPLASRYGYEDT-------- 394 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + DG + RR Sbjct: 395 -------GHGITVYPEDHNGDGLYVTTFRRTT 419 >gi|157157684|ref|YP_001463137.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli E24377A] gi|253773210|ref|YP_003036041.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260844181|ref|YP_003221959.1| putative methyltransferase [Escherichia coli O103:H2 str. 12009] gi|297517982|ref|ZP_06936368.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli OP50] gi|300924905|ref|ZP_07140836.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 182-1] gi|300928863|ref|ZP_07144369.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 187-1] gi|301327598|ref|ZP_07220815.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 78-1] gi|157079714|gb|ABV19422.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli E24377A] gi|253324254|gb|ACT28856.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257759328|dbj|BAI30825.1| predicted methyltransferase [Escherichia coli O103:H2 str. 12009] gi|300418923|gb|EFK02234.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 182-1] gi|300463153|gb|EFK26646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 187-1] gi|300845847|gb|EFK73607.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 78-1] gi|323961889|gb|EGB57488.1| NOL1/NOP2/sun family protein [Escherichia coli H489] Length = 481 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|331657881|ref|ZP_08358843.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA206] gi|320194451|gb|EFW69082.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli WV_060327] gi|331056129|gb|EGI28138.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA206] Length = 479 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|218699594|ref|YP_002407223.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli IAI39] gi|226725335|sp|B7NS84|RSMF_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218369580|emb|CAR17349.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli IAI39] Length = 479 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|215487048|ref|YP_002329479.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O127:H6 str. E2348/69] gi|312967035|ref|ZP_07781253.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli 2362-75] gi|254766863|sp|B7USL2|RSMF_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|215265120|emb|CAS09508.1| predicted methyltransferase [Escherichia coli O127:H6 str. E2348/69] gi|312288499|gb|EFR16401.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli 2362-75] Length = 479 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|24051702|gb|AAN42992.1| putative nucleolar proteins [Shigella flexneri 2a str. 301] Length = 406 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 45 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 104 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S ++ L N+ R + + Sbjct: 105 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 164 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 165 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 225 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 281 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 282 IYDCE--------GFFVARLRK 295 >gi|146325706|sp|Q0T529|RSMF_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|146325707|sp|Q83RJ3|RSMF_SHIFL RecName: Full=Putative ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|332762420|gb|EGJ92685.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri 4343-70] gi|333004220|gb|EGK23751.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri K-218] Length = 479 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S ++ L N+ R + + Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 179 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|254488907|ref|ZP_05102112.1| rRNA small subunit methyltransferase B [Roseobacter sp. GAI101] gi|214045776|gb|EEB86414.1| rRNA small subunit methyltransferase B [Roseobacter sp. GAI101] Length = 386 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 130/399 (32%), Gaps = 50/399 (12%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L+ + + + + S F +D+ VR V LR Sbjct: 1 MTPG--ARVSAAIEILNAM-AEGLPAEQAMTRWARSSRFAG--SKDRAAVRDYVFDVLRQ 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + +L AD + A + + Sbjct: 56 RRTAAYFGGGETGR-----------ALMIG---LLRAQGADLETLFTGEGHAPQPLADA- 100 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + A + +P+W G ++ A++ A S I Sbjct: 101 ------------EQTVPDAPTDTATLWNLPDWIIPDFNESLG-DQAEAVAFALQSRAPIT 147 Query: 180 LTVK----------FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 L V + A + + E I + P + EG +QDAS Sbjct: 148 LRVNLAQSNPGSVSAQLSDLGIDTRANPRAPSALTVVEGERKIRNSPLYLEGKVELQDAS 207 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V VLD CA GGK + G +V A D+ RR+ L R Sbjct: 208 SQAIVAAMP--KAGRVLDYCAGGGGKALGIAMYPGTEVFAHDIDPRRMSDLPARAARAGC 265 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I D K FD VL DAPCS +G RR + WT + + Q +L Sbjct: 266 VIPQIETED---LPAKAPFDVVLCDAPCSGSGAWRRSAEGKWTLTAARLEELTHIQDSIL 322 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 G +V++ CS+ K ++E+ ++ L P Sbjct: 323 DAAAELTTENGCLVYATCSVLKFENEDRIKAFLTRHPDW 361 >gi|281178902|dbj|BAI55232.1| conserved hypothetical protein [Escherichia coli SE15] Length = 481 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|191168496|ref|ZP_03030283.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B7A] gi|193066047|ref|ZP_03047104.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli E22] gi|194429657|ref|ZP_03062175.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B171] gi|218695401|ref|YP_002403068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 55989] gi|254161895|ref|YP_003045003.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli B str. REL606] gi|254766864|sp|B7L7N7|RSMF_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|257096803|sp|A7ZMV8|RSMF_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|190901449|gb|EDV61211.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B7A] gi|192926284|gb|EDV80921.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli E22] gi|194412299|gb|EDX28603.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B171] gi|218352133|emb|CAU97871.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli 55989] gi|242377556|emb|CAQ32311.1| 16S rRNA m[5]C1407 methyltransferase [Escherichia coli BL21(DE3)] gi|253973796|gb|ACT39467.1| predicted methyltransferase [Escherichia coli B str. REL606] gi|253977990|gb|ACT43660.1| predicted methyltransferase [Escherichia coli BL21(DE3)] gi|320198015|gb|EFW72623.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli EC4100B] gi|323158681|gb|EFZ44695.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli E128010] gi|323186416|gb|EFZ71764.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli 1357] gi|332343560|gb|AEE56894.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 479 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|323972658|gb|EGB67861.1| NOL1/NOP2/sun family protein [Escherichia coli TA007] Length = 481 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|126462869|ref|YP_001043983.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|126104533|gb|ABN77211.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029] Length = 387 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 90/451 (19%), Positives = 141/451 (31%), Gaps = 77/451 (17%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L ++ L S F D+ VR +V LR Sbjct: 1 MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + LR++ E A+ H Sbjct: 56 RRSFARAGGAETGRGL------VLGGLRMA-----------------GQEVAELFTGEGH 92 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYI 178 P+W L + G + + +P+++ Sbjct: 93 APAPPAGSELEPQAPAELDALDC------PDWLAPALRDSLGADFAPVMEALRHRAPVFL 146 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASA 230 + + D A +L A + T L E + P + EG +QDA++ Sbjct: 147 RVNLARTDRAAAAAELAAEGIATQPHPLAETALEVTENPRRLQASAAYREGRVELQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289 V + VLD CA GGK+ + A D RR+ L R Sbjct: 207 QAIVAALPLASGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGAE 266 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D P FD VL D PCS +G+ RR P+ W+ + + + Q +L Sbjct: 267 VRRLAPGDPARRGP---FDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILD 323 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + V+PGG + ++ CSL ++ L SP + Sbjct: 324 EVAPLVRPGGHLAYATCSLLASENAGQTDAFLERSPGWARV------------------- 364 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+TP G DGFF L+R Sbjct: 365 -HQLRLTP---------LDGGDGFFLDLLQR 385 >gi|317131030|ref|YP_004090344.1| RNA methylase, NOL1/NOP2/sun family [Ethanoligenens harbinense YUAN-3] gi|315469009|gb|ADU25613.1| RNA methylase, NOL1/NOP2/sun family [Ethanoligenens harbinense YUAN-3] Length = 471 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 99/234 (42%), Gaps = 16/234 (6%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTAL 269 P GV+++Q+ SA V VLDLCAAPGGK+ Q+ + A Sbjct: 87 GRHPWHHAGVFYLQEPSAMSAVTALDPRPGQRVLDLCAAPGGKSTQIAARLGGQGLLVAN 146 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++ R + L NL+R + + + FDAVLVDAPCS G RR P Sbjct: 147 EIVPGRAKILLSNLERFGVRNACVYNETPERLCAAFPGFFDAVLVDAPCSGEGMFRREPA 206 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + A QR +L + ++PGG++V+S C+ +++E VV L+ +P Sbjct: 207 AAAEWTPETPAACARRQRAILDWAKTALRPGGVLVYSTCTFAPEENECVVAAFLKENPDF 266 Query: 388 -VELVPLNSAYWKSIDMAMA-LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +E +P D S E RI P G +G F LR Sbjct: 267 SMEPIPCAFGRPARPDWGGGEPSLELARRIFPQ---------DGGEGHFVARLR 311 >gi|331647332|ref|ZP_08348426.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli M605] gi|331044115|gb|EGI16251.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli M605] Length = 481 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|301025409|ref|ZP_07188961.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 196-1] gi|299880085|gb|EFI88296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 196-1] Length = 464 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 45 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 104 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 105 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 164 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 165 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 225 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 281 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 282 IYDCE--------GFFVARLRK 295 >gi|194439069|ref|ZP_03071152.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli 101-1] gi|194422028|gb|EDX38032.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli 101-1] Length = 479 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|74311854|ref|YP_310273.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sonnei Ss046] gi|73855331|gb|AAZ88038.1| putative nucleolar proteins [Shigella sonnei Ss046] Length = 481 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|294012545|ref|YP_003546005.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S] gi|292675875|dbj|BAI97393.1| tRNA/rRNA cytosine-C5-methylase [Sphingobium japonicum UT26S] Length = 391 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 90/455 (19%), Positives = 146/455 (32%), Gaps = 77/455 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL +M + L+ + + + RD+ VR V Sbjct: 1 MTPS--ARVQAAIELLDAIMASARDGGPAADTLIARYFKERRYAG--SRDRRAVRDHVYD 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R V + V +A E A Sbjct: 57 AVRR----------VAERPESGRAA------MVGLA-------------RERAELAALFD 87 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + H + A ++P W + L ER + A + Sbjct: 88 GSAHGPAPIAHSEA------------GAPAGVVPGWIEPLL--AAPVERDALLGRAPVDL 133 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L D + + + + G VQDA + + Sbjct: 134 RVNRLKGAPDRVAQHYPDAVRIAGLPDALRLPEGAPVEQSDPWKWGQVEVQDAGSQLISA 193 Query: 236 LFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 ++V+DLCA GGKT A + + A D + RL +L DR + Sbjct: 194 ACAAAPGMTVIDLCAGAGGKTLALAAAMGGKGVLIAADTIRSRLARLDPRADRAGATFIE 253 Query: 293 IIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + +D K D VLVDAPCS TGT RR+P+ W + + A Q ++ Sbjct: 254 TLLLDQGHEAGALESLKGRADVVLVDAPCSGTGTWRRNPEARWRLTPARLDRLAAEQARI 313 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + PGG ++++ C+L ++ + V+ L + I+ AM Sbjct: 314 LDFAAPLLAPGGALIYAVCALTDREGRDQVRAFLERHDGWTV---------ERIEAAMGR 364 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + +TP G DGF+ LRR Sbjct: 365 AHGDGLLLTPGH--------DGTDGFYFARLRRTA 391 >gi|161485915|ref|NP_707285.2| putative nucleolar proteins [Shigella flexneri 2a str. 301] gi|332760448|gb|EGJ90737.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri 2747-71] gi|332767094|gb|EGJ97289.1| ribosomal RNA small subunit methyltransferase F [Shigella flexneri 2930-71] Length = 421 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S ++ L N+ R + + Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 179 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|331653241|ref|ZP_08354246.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli M718] gi|331049339|gb|EGI21411.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli M718] Length = 481 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDIAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|260855695|ref|YP_003229586.1| putative methyltransferase [Escherichia coli O26:H11 str. 11368] gi|300904700|ref|ZP_07122533.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 84-1] gi|301304407|ref|ZP_07210519.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 124-1] gi|257754344|dbj|BAI25846.1| predicted methyltransferase [Escherichia coli O26:H11 str. 11368] gi|300403367|gb|EFJ86905.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 84-1] gi|300840258|gb|EFK68018.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 124-1] gi|315257353|gb|EFU37321.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 85-1] Length = 481 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|323449480|gb|EGB05368.1| hypothetical protein AURANDRAFT_59367 [Aureococcus anophagefferens] Length = 373 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 126/308 (40%), Gaps = 26/308 (8%) Query: 156 LENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLK------- 206 L F E V + + T+K + A L + + Sbjct: 64 LTIFSPSECVEFMDANDKPRPVVIRTNTLKTRRKDLAQTLIKRGVHLEPMAAWSKVALKI 123 Query: 207 -ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 E + + P + G + +Q A++ PV G VL+L AAPGGK++ + + Sbjct: 124 TESSVPVGATPEYLAGHYMLQSAASQCPVLALGPEPGERVLELAAAPGGKSSYCAQLMKN 183 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGT 321 + D+ K R + NL RL + + D + FD VL+DAPC+ G Sbjct: 184 SGTLVCNDLKKERHKATVANLHRLGVSNAVVCCHDGRAFPGVMGGFDRVLLDAPCTGLGV 243 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV--KPGGIVVFSNCSLDKQDSEEVVQK 379 I R + TR +D+ K A Q++L+L I V K G+VV+S CS+ ++E+VVQ Sbjct: 244 ISRDQSIKGTRTLEDVKKLAHLQKELILAAIDSVDDKKAGVVVYSTCSVAVLENEDVVQY 303 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAVA 437 L + + L A A G R P M + + MDGFF Sbjct: 304 ALDKRNVKLVDAGLPFA-------CDAFVRCGQKRYHPSMALARRFYPHTHNMDGFFVAK 356 Query: 438 LRRLIQPK 445 L++L PK Sbjct: 357 LQKLS-PK 363 >gi|330911643|gb|EGH40153.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli AA86] Length = 479 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|301645651|ref|ZP_07245579.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 146-1] gi|301076080|gb|EFK90886.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 146-1] Length = 481 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCGEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|146325708|sp|Q3Z2H4|RSMF_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|323166480|gb|EFZ52243.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella sonnei 53G] Length = 479 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|147921688|ref|YP_684492.1| tRNA/rRNA cytosine-C5-methylase [uncultured methanogenic archaeon RC-I] gi|110619888|emb|CAJ35166.1| putative tRNA/rRNA cytosine-C5-methylase (Nop2/Sun family) [uncultured methanogenic archaeon RC-I] Length = 316 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 119/309 (38%), Gaps = 20/309 (6%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML--- 198 A E+ R S YI + +K +L Sbjct: 14 AKKYKYNEYMVARFARLVPDLEKFLESMEAPPATYIRVNTLKIAPNALLKRLTDKGFTLK 73 Query: 199 ---PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + P SI + G ++VQD S+ IP +V+D+ A+PGGK Sbjct: 74 PADIPDCFEVTGEPYSIGASAEHLLGYFYVQDKSSMIPPLALAPNPGDTVIDMAASPGGK 133 Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311 T + + + + A++ R+ LR N+ R + I MDA + D +L Sbjct: 134 TTHIAQLMNNEGLIVAIEKEPGRIPSLRTNIGRCGVMNTAIYNMDALEADKIGVKADKIL 193 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 +DAPC+ G I R +R+ DI + Q +L+ + +KPGG +V+S CS + Sbjct: 194 LDAPCTGEGVIARDRSRKTSREEADIQFCSTVQHELIDAALKVLKPGGTLVYSTCSYAPE 253 Query: 372 DSEEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E ++ ++ + V+ VP K + A + R+ P + Sbjct: 254 ENELIIDYAVKKYGLKVDPVPYGVPGIEKFGSLTFAPEVKNARRMYPHI--------HNT 305 Query: 431 DGFFAVALR 439 GFF LR Sbjct: 306 TGFFVARLR 314 >gi|256022501|ref|ZP_05436366.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp. 4_1_40B] gi|300951450|ref|ZP_07165288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 116-1] gi|300956658|ref|ZP_07168934.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 175-1] gi|331642446|ref|ZP_08343581.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli H736] gi|260449044|gb|ACX39466.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli DH1] gi|300316536|gb|EFJ66320.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 175-1] gi|300449302|gb|EFK12922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 116-1] gi|315136478|dbj|BAJ43637.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli DH1] gi|331039244|gb|EGI11464.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli H736] Length = 481 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|323948280|gb|EGB44268.1| NOL1/NOP2/sun family protein [Escherichia coli H120] Length = 479 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|323153088|gb|EFZ39356.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli EPECa14] Length = 479 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|193069919|ref|ZP_03050868.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli E110019] gi|192956819|gb|EDV87273.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli E110019] Length = 479 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|188494314|ref|ZP_03001584.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli 53638] gi|188489513|gb|EDU64616.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli 53638] Length = 481 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|254511064|ref|ZP_05123131.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11] gi|221534775|gb|EEE37763.1| NOL1/NOP2/sun family protein [Rhodobacteraceae bacterium KLH11] Length = 387 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 82/453 (18%), Positives = 140/453 (30%), Gaps = 80/453 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L ++ + L S F +D+ +R V LR Sbjct: 1 MTP--AARVQAAIGILDDIL-SGAPVEKALTGWARRSRFAG--SKDRAAIRDHVFDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118 R + L + + + + + ++ Sbjct: 56 KRSF-----------AARGGAGTGRGLMIGA--LRSSGIDPALIFTGEGYAPTQLTERDQ 102 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-Y 177 A ++ IPEW + + A + + Sbjct: 103 GRALQTDAE-----------------RLDIPEWLWPAFQASLAEAAEPAAVASQSRAPVH 145 Query: 178 IDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDAS 229 + + K D+ L A + + + FA G+ +QDA+ Sbjct: 146 LRVNLAKTDVPAAIRALAAEGIQAQPHPACDTALEVVEGARKLSQGAAFAAGLVELQDAA 205 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + + VLD CA GGKT SG +V A D + R+ L R Sbjct: 206 SQAVIAALDLQPGMRVLDYCAGGGGKTLALAARGSGVQVFAHDANPGRMRDLPARAQRAG 265 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + + + FD VLVD PCS +G+ RR P W D + + Q + Sbjct: 266 ADIAILTQ---DQVAARAPFDIVLVDVPCSGSGSWRRAPAGKWALTQDRLHELTEIQASI 322 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L V GG + ++ CS+ + +++ VV L++ P Sbjct: 323 LTNVAPLVAGGGTLAYATCSMLRVENDAVVDGFLQAHPDW-------------------- 362 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G+ + VS G DGF+ L R Sbjct: 363 -KSGFRKTW--------LVSHGTDGFYTAHLTR 386 >gi|89108675|ref|AP_002455.1| predicted methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|90111341|ref|NP_416349.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|170081491|ref|YP_001730811.1| methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|238901050|ref|YP_002926846.1| putative methyltransferase [Escherichia coli BW2952] gi|307138495|ref|ZP_07497851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli H736] gi|3915994|sp|P76273|RSMF_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|226725337|sp|B1XHA3|RSMF_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|259495488|sp|C4ZZJ2|RSMF_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|85675140|dbj|BAA15648.2| predicted methyltransferase [Escherichia coli str. K12 substr. W3110] gi|87081985|gb|AAC74905.2| 16S rRNA m(5)C1407 methyltransferase, SAM-dependent [Escherichia coli str. K-12 substr. MG1655] gi|169889326|gb|ACB03033.1| predicted methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|238862668|gb|ACR64666.1| predicted methyltransferase [Escherichia coli BW2952] gi|323940499|gb|EGB36690.1| NOL1/NOP2/sun family protein [Escherichia coli E482] Length = 479 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|257871095|ref|ZP_05650748.1| NOL1/NOP2/sun family protein [Enterococcus gallinarum EG2] gi|257805259|gb|EEV34081.1| NOL1/NOP2/sun family protein [Enterococcus gallinarum EG2] Length = 454 Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 13/226 (5%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I + VLDLCAAPGGKT Q + + + ++ + Sbjct: 76 HQAGYVYSQEPSAMIVATIADAQPGEKVLDLCAAPGGKTTQLASQMQGKGLLVSNEIFTK 135 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P + Sbjct: 136 RAKILSENVERWGISNVVVTNHAPQELTPHFPQFFDKIVVDAPCSGEGMFRKDPVAIAEW 195 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D ++ A Q+++L + ++ +KPGG +++S C+ +++E +++ ++ + P +E + Sbjct: 196 QADSPLQCAQRQKEILAEAVAMLKPGGQLIYSTCTFAPEENEAIIEWLVSAYPFSIEPIE 255 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + D A E IR+ P + G FA L Sbjct: 256 LENVSHGRHDWAPMNDIEKTIRLWPHKNQGE--------GHFAAKL 293 >gi|323175088|gb|EFZ60702.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli LT-68] Length = 479 Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|209919201|ref|YP_002293285.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli SE11] gi|256017977|ref|ZP_05431842.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9] gi|300824225|ref|ZP_07104343.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 119-7] gi|307314087|ref|ZP_07593699.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W] gi|331677714|ref|ZP_08378389.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli H591] gi|332279011|ref|ZP_08391424.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9] gi|209912460|dbj|BAG77534.1| conserved hypothetical protein [Escherichia coli SE11] gi|300523296|gb|EFK44365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 119-7] gi|306906225|gb|EFN36742.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli W] gi|315061138|gb|ADT75465.1| predicted methyltransferase [Escherichia coli W] gi|323378285|gb|ADX50553.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli KO11] gi|324018025|gb|EGB87244.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 117-3] gi|331074174|gb|EGI45494.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli H591] gi|332101363|gb|EGJ04709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella sp. D9] Length = 481 Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|322493784|emb|CBZ29073.1| putative nucleolar protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 625 Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 125/313 (39%), Gaps = 24/313 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E+ + + + + +A + V + A Sbjct: 227 YEYSEFLMDAVLQLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 286 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A++ +PV N VLD+ AAPGG Sbjct: 287 LEKWSKVGLQVFESNVPIAGTIEYLAGHYMLQAAASFLPVMALAPQENDRVLDMSAAPGG 346 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT + + + + A DVS+ R + L NL RL + + D Y + FD V Sbjct: 347 KTTYIAQLMKNTGVLFANDVSEPRCKSLNANLQRLGVTNCIVTNYDGTGYERVMRNFDRV 406 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS TG I R + ++ +DI +++ QR LLL I K GG VV+S CS Sbjct: 407 LLDAPCSGTGIISRDKSIKTSKQYEDIQRASQLQRALLLGAIDACKIGGYVVYSTCSFLV 466 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PDMLEKIDGVSS 428 ++ E +V LR + V + L + R ++ + Sbjct: 467 EEDEAIVDFALRRRDLQVVEMGLPFGRP-------GFTKYRHHRYHNSLELSRRYFPHVH 519 Query: 429 GMDGFFAVALRRL 441 MDGFF +++L Sbjct: 520 NMDGFFICKMKKL 532 >gi|218509188|ref|ZP_03507066.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil 5] Length = 250 Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 104/205 (50%), Positives = 136/205 (66%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ +++ L LD E+G+ A++ L + D+ LVRAI+N TLR LPRIDA + +L S LP Sbjct: 46 VVDRKLPLDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASLLESPLPE 105 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 +L +L + AQILYLDV D++ VDLAVEQA +D NR FAKLVN++LRR+ REK Sbjct: 106 GARALHHVLSIGAAQILYLDVPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDA 165 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVM 197 +L I ++ +P WF RLE YG++ LAIS + + P IDLTVK D E WA +LN V Sbjct: 166 VLAEIGKVAPMPSWFLARLEKAYGRDAALAISRSQLEPAAIDLTVKSDAEGWAKRLNGVA 225 Query: 198 LPTGGIRLKELPESIVSLPGFAEGV 222 LPTGG+RL I SL GF EG Sbjct: 226 LPTGGVRLAAFDGGIPSLEGFDEGA 250 >gi|320183016|gb|EFW57882.1| Ribosomal RNA small subunit methyltransferase F [Shigella flexneri CDC 796-83] Length = 479 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|56696906|ref|YP_167268.1| NOL1/NOP2/sun family protein [Ruegeria pomeroyi DSS-3] gi|56678643|gb|AAV95309.1| NOL1/NOP2/sun family protein [Ruegeria pomeroyi DSS-3] Length = 391 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 89/454 (19%), Positives = 146/454 (32%), Gaps = 82/454 (18%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L ++ L S F +D+ +R V LR Sbjct: 1 MTP--AARLQSAIEVLDEILA-GKPAEQALTGWARRSRFAG--SKDRAALRDHVFDALRA 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLR---VSVAQILYLDVADYAVVDLAVEQAKRDKE 116 A L + L R ++VA + + + EQA Sbjct: 56 RRSFAARGGAETGRGL------ILGLCRAQGLAVADL-FTGIGHAPAPLTPEEQAGGRDP 108 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF-YGKERVLAISDACISP 175 A + IP+W R E + +P Sbjct: 109 APG-----------------------AEAADIPDWLWPRFEASLGARAEAAGQVMQSRAP 145 Query: 176 LYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQD 227 +++ + + D + L + + I + +G+ +QD Sbjct: 146 VHLRVNTARTDRASAIAALAGEGIVAQPHPACDTALEVTEGARGIARSAAYLDGLVELQD 205 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 A++ V + VLD CA GGKT V G +V A D + +R+ L R Sbjct: 206 AASQAIVAALPLAPGMRVLDYCAGGGGKTLALAAVPGIEVFAHDAAPQRMRDLPARAARA 265 Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + +D + FD VL DAPCS +G+ RR P W + QR+ Sbjct: 266 GA---QVRLLDTAEAARMAPFDLVLADAPCSGSGSWRRAPAGKWELSEEKFAALLAVQRE 322 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + PGG++ ++ CS+ ++++ VQ L + + Sbjct: 323 ILHCAAALTAPGGVLAYATCSMLSEENDGAVQAFLDTGGWKL------------------ 364 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + R V SG DGFF L R Sbjct: 365 ---DDCHR---------WDVLSGTDGFFLALLTR 386 >gi|218554409|ref|YP_002387322.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli IAI1] gi|293446207|ref|ZP_06662629.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B088] gi|331668527|ref|ZP_08369375.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA271] gi|226725336|sp|B7M2B1|RSMF_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|257096806|sp|B6IBR3|RSMF_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218361177|emb|CAQ98760.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli IAI1] gi|291323037|gb|EFE62465.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B088] gi|324118895|gb|EGC12784.1| NOL1/NOP2/sun family protein [Escherichia coli E1167] gi|331063721|gb|EGI35632.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA271] Length = 479 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|320181122|gb|EFW56041.1| Ribosomal RNA small subunit methyltransferase F [Shigella boydii ATCC 9905] Length = 479 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|300917592|ref|ZP_07134245.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 115-1] gi|300415192|gb|EFJ98502.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 115-1] Length = 481 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|82543759|ref|YP_407706.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii Sb227] gi|81245170|gb|ABB65878.1| putative nucleolar proteins [Shigella boydii Sb227] Length = 481 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|187732363|ref|YP_001880634.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella boydii CDC 3083-94] gi|187429355|gb|ACD08629.1| ribosomal RNA small subunit methyltransferase F [Shigella boydii CDC 3083-94] Length = 481 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|328950272|ref|YP_004367607.1| RNA methylase, NOL1/NOP2/sun family [Marinithermus hydrothermalis DSM 14884] gi|328450596|gb|AEB11497.1| RNA methylase, NOL1/NOP2/sun family [Marinithermus hydrothermalis DSM 14884] Length = 450 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 119/313 (38%), Gaps = 21/313 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISD--ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 P+ F R+ + G+E + A + + L+ L Sbjct: 1 MRFPKAFLHRMHDLLGEEYPAFLKALTAQDRSYGLRVNTLKLEPRAFQALSPWPLEPIPW 60 Query: 204 RLKELPESIVS----LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258 + + P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 61 CPEGFYYPPEARPGPHPYFYAGLYYIQEPSAQAVGVLAAPKPGERVLDLAAAPGGKTTHL 120 Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAP 315 + + A +V RR+ L N++R A ++ FD V++DAP Sbjct: 121 AARMQGQGLLIANEVDGRRVRGLLENVERWGARLAVVSARVEQLAQAWGGYFDRVVLDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P+ + +++ QR+L+L + V+PGG++V++ C+ +++E Sbjct: 181 CSGEGMFRKDPEAVRHWGPGSPARASRIQRRLILAAAALVRPGGVLVYATCTFAPEENEA 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSGMDG 432 VV +L + P + A E R+ P L G Sbjct: 241 VVAALLEAHPEFEVEDARFHPAFAPGVPAWGGGEVRLERTARLWPHRLRGE--------G 292 Query: 433 FFAVALRRLIQPK 445 + LRR P+ Sbjct: 293 HYLARLRRTDGPE 305 >gi|171060673|ref|YP_001793022.1| sun protein [Leptothrix cholodnii SP-6] gi|170778118|gb|ACB36257.1| sun protein [Leptothrix cholodnii SP-6] Length = 453 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 136/350 (38%), Gaps = 36/350 (10%) Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIA-----GISIIPEWFKERLENFYGKERV 165 A A VN++LRR RE+ L+ R P W+ ++L+ + K+ Sbjct: 118 ACAHVRAPASASFVNAVLRRFLRERDALVPRWEAADPVVRHQHPRWWIDQLQRDWPKQWQ 177 Query: 166 LAISDACISPLY-IDLTVKFD-----IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + A + + + A + + + P + +LPGF Sbjct: 178 ALLGAANQHAPMALRVNARQTDAAGYRAELAAIGIEAQVVSSHALVLHKPAPVQALPGFE 237 Query: 220 EGVWWVQDASASIPVQL------FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD-VS 272 G VQD SA + L VLD CAAPGGKTA L+ V Sbjct: 238 RGRVSVQDLSAQVAAPLLIGSGPDRLAPGARVLDACAAPGGKTAHLLELAELDLLALDVD 297 Query: 273 KRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 RL ++ L R+ L A + + + FDA+L+DAPCS++G +RRHPDV W Sbjct: 298 ATRLARVEQTLQRVGLRAALAVADAGEPSRWWDGQPFDAILLDAPCSASGIVRRHPDVRW 357 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 R DI A Q +LL +KPGG +V++ CS+ + + V L+ +P + Sbjct: 358 LRRASDIKALAATQSRLLDALWGLLKPGGRLVYATCSVFRAEGSGQVAAFLQRTPGAIAR 417 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P +D S DGFF L + Sbjct: 418 -PSPGHLLGVVDNPAQAGE---------------VASVAGDGFFYARLDK 451 >gi|300816275|ref|ZP_07096497.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 107-1] gi|300530965|gb|EFK52027.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 107-1] Length = 481 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + L + G ++ E + S G++++Q+AS+ +PV N Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAAQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|333003634|gb|EGK23170.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri VA-6] Length = 479 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFGGRV 179 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGASVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|261408370|ref|YP_003244611.1| Fmu (Sun) domain-containing protein [Paenibacillus sp. Y412MC10] gi|261284833|gb|ACX66804.1| Fmu (Sun) domain protein [Paenibacillus sp. Y412MC10] Length = 534 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 26/260 (10%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E P + G++++Q+ SA PV+L VLDLCAAPGGK+ Sbjct: 60 PWCPTGYYIQEGERPGRHPYYHAGLYYIQEPSAMAPVELLDVTPGDRVLDLCAAPGGKST 119 Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q+ + + D+ R + L NL+ + ++ + F +L+ Sbjct: 120 QIAAKLKGQGMLISNDLHPDRTKALAKNLEMYGVRNAVVLNEEPERIAGAFPEFFTKILI 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ +L + +K A QR +L + + PGG +V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDESMLKYWEESSPLKFAEMQRDILKSAAAMLCPGGRLVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------RITPDML 420 +E ++ + L P +VP++ + + S ++ +G + R+ P + Sbjct: 240 NEGMIAEFLSEHP-DFRVVPVDHSEFFSPGETDWMAGQGNVKDDVLGQLAGTARLWPHKV 298 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G F L+R Sbjct: 299 RGE--------GHFMAVLQR 310 >gi|320177052|gb|EFW52072.1| Ribosomal RNA small subunit methyltransferase F [Shigella dysenteriae CDC 74-1112] Length = 479 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|196249240|ref|ZP_03147939.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. G11MC16] gi|196211469|gb|EDY06229.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. G11MC16] Length = 454 Score = 143 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 129/310 (41%), Gaps = 24/310 (7%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +PE F +++ + A+ + + +K ++WA + P Sbjct: 1 MRLPEAFVAKMKKLLHEEADEFFAVYENEKTNGLRVNPLKTSPDSWAKMAPFSLTPVPFC 60 Query: 204 RLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P A G++++Q+ SA + +VLDLCAAPGGKT Q Sbjct: 61 PTGFYYDRSEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLG 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 ++ + + A ++ +R++ L N++RL L ++ + FD +LVDAP Sbjct: 121 AMMENKGLLVANEIHPKRVKALAENVERLGLTNTVVVNETPEALAERFPGFFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + + A QR++L + +K GGI+V+S C+ +++E+ Sbjct: 181 CSGEGMFRKEEEAASFWSQAYVEECAARQRRILQSAYAMLKEGGILVYSTCTFSPEENEQ 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGM 430 ++ +L++ + +VP+ E R+ P ++ Sbjct: 241 TIEWLLQTY-DDLRMVPIEKTGGIEPGRPEWTKTNRAELEHAARLWPHRVKGE------- 292 Query: 431 DGFFAVALRR 440 G F L++ Sbjct: 293 -GHFIAKLQK 301 >gi|227524487|ref|ZP_03954536.1| tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088357|gb|EEI23669.1| tRNA/rRNA methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 467 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 18/303 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ FK + G++ L + + + +N + Sbjct: 1 MQLPDDFKNKYTKLLGQQEALQFLASFSKTANHGFRLNPLKQN--QPVNIDLSHPTAHCQ 58 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + G + Q+ SA ++ VLDLCAAPGGKT + Sbjct: 59 LGYYGDVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKPGERVLDLCAAPGGKTTHVGSYMA 118 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319 + + A ++ +R + L N++R L + + FD +LVDAPCS Sbjct: 119 NLGLLIANEIDHKRSKVLMENVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGE 178 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A QR++L + + +KPGG +++S C+ ++ E+++ Sbjct: 179 GMFRKDPDAVSYWSLDYPEECATRQRQILNETVKNLKPGGELIYSTCTFAPEEDEQIIAW 238 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 +++ + V +P+ +RI P+ +G F Sbjct: 239 LVKQYHFDILPVKKFPGMDSGRPDWADGNPDLVNCVRIFPNHF--------NGEGHFIAK 290 Query: 438 LRR 440 L++ Sbjct: 291 LKK 293 >gi|242398230|ref|YP_002993654.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sibiricus MM 739] gi|242264623|gb|ACS89305.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sibiricus MM 739] Length = 310 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 17/257 (6%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + G L P SI S P + G+ ++Q+AS+ P + D+ AA Sbjct: 63 QFKRISWAREGFCLTREPFSITSTPEYLGGLIYIQEASSMYPPVALEPKPGEIIADMAAA 122 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLF 307 PGGKT+ + + + + A DV + RL++ R NL RL + I + + F Sbjct: 123 PGGKTSYMAQLMKNKGVIYAFDVGRDRLKETRLNLSRLGVTNTILIHKSSLYMGELGIEF 182 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L+DAPC+ +GTI ++P+ R +D+ Q +++ + +K GG++V+S CS Sbjct: 183 DKILLDAPCTGSGTIHKNPERKADRTIEDVKFCQNLQMQMIKVALENLKVGGVLVYSTCS 242 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK---SIDMAMALSPEGWIRITPDMLEKID 424 L+ +++E V+Q L + + L+PL D+ ++ R PD Sbjct: 243 LEPEENEFVIQWALDNF--DIALLPLRFGEPALTSPFDIELSSELAKARRFYPD------ 294 Query: 425 GVSSGMDGFFAVALRRL 441 GFF +++ Sbjct: 295 --EHNTSGFFVAKIQKK 309 >gi|222529210|ref|YP_002573092.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor bescii DSM 6725] gi|222456057|gb|ACM60319.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor bescii DSM 6725] Length = 455 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 19/307 (6%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200 +PE F ++ ++ + I D + T K ++ + K+ + Sbjct: 1 MNLPEEFLSKMREILNDEFDQFIKIYDFDSYKGFRVNTAKVSVKEFIDKMGIEFERIPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P + G+ ++Q+ SA PV+ VLDLCAAPGGK+ Q Sbjct: 61 KDGFFYTEELRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 + + + DV R++ L N++ L L I+ + FD +LVDAP Sbjct: 121 ARLGQNGLLISNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P ++ K QR ++ + +K GG +V+S C+ + +++E Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240 Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ L+ V + + I++ + + +RI P + G F Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292 Query: 435 AVALRRL 441 LR++ Sbjct: 293 ICKLRKV 299 >gi|170290689|ref|YP_001737505.1| RNA methylase [Candidatus Korarchaeum cryptofilum OPF8] gi|170174769|gb|ACB07822.1| RNA methylase, NOL1/NOP2/sun family [Candidatus Korarchaeum cryptofilum OPF8] Length = 329 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 28/311 (9%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA--------HKLNAVMLPT 200 PE+ + E + A I + W +L+ + Sbjct: 26 PEFERRYRELLGDEYETFLSFMAKRPVPSIRVNPMKIDPEWLLSVLRANGWELSQIPWYG 85 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 G R+ PE + + G+++VQ+A++ +P L VLDL A+PG K Q Sbjct: 86 YGYRVIRGPERLGNTEWHQLGLYYVQEAASMVPPVLLSPKPGERVLDLAASPGSKATQIS 145 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDA 314 +++ V A DVS R++ L N+ R+ + D ++ FD VL+D+ Sbjct: 146 EMMLYKGLVVANDVSPERVDSLSSNVQRMGSMNVVVTMFDGRRAPDVLGRESFDKVLLDS 205 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCSS G +RR L ++ K + Q L +KPGG++V+S C+ + +++E Sbjct: 206 PCSSLGEVRRSWGALARWSPRNVEKISRLQVSLAKAAYETLKPGGLMVYSTCTFEPKENE 265 Query: 375 EVVQKVLR-----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 VV K+L P LV K +D E +RI P + Sbjct: 266 WVVYKLLEIGAVIEEPEVKGLVW-RKGLRKWMDWDFGNEMEKCMRIYPQD--------ND 316 Query: 430 MDGFFAVALRR 440 GFF LR+ Sbjct: 317 TIGFFIAVLRK 327 >gi|257096822|sp|B2U477|RSMF_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|146325704|sp|Q321Y0|RSMF_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|332096600|gb|EGJ01594.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella boydii 3594-74] Length = 479 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|309794215|ref|ZP_07688639.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 145-7] gi|308122120|gb|EFO59382.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 145-7] Length = 481 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P+ VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNQEENEAVCLWLKETYPVAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|221639886|ref|YP_002526148.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131] gi|221160667|gb|ACM01647.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131] Length = 387 Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 87/451 (19%), Positives = 144/451 (31%), Gaps = 77/451 (17%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L ++ L S F D+ VR +V LR Sbjct: 1 MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + LR++ + + A Sbjct: 56 RRSFARAGGAETGRGL------VLGGLRMAGQE--------VGDLFTGEGHAPAPPAGSE 101 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPLYI 178 + L + P+W L + G + + +P+++ Sbjct: 102 LKPQAPAELEALD---------------CPDWLAPALRDSLGADFAPVMEALRHRAPVFL 146 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASA 230 + + D A +L A + T L E + P + EG +QDA++ Sbjct: 147 RVNLARTDRAAAAAELAAEGIVTQPHPLAETALEVTENPRRLQASAAYREGRVELQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289 V + VLD CA GGK+ + A D RR+ L R Sbjct: 207 QAIVAALPLASGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGA- 265 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 ++ + + FD VL D PCS +G+ RR P+ W+ + + + Q +L Sbjct: 266 --EVRRLAPGAPERRGPFDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILD 323 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + V+PGG + ++ CSL ++ L SP + Sbjct: 324 EVAPLVRPGGHLAYATCSLLASENAGQTDAFLERSPGWARV------------------- 364 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+TP G DGFF L+R Sbjct: 365 -HQLRLTP---------LDGGDGFFLDLLQR 385 >gi|138895319|ref|YP_001125772.1| tRNA and rRNA cytosine-C5-methylase [Geobacillus thermodenitrificans NG80-2] gi|134266832|gb|ABO67027.1| tRNA and rRNA cytosine-C5-methylase [Geobacillus thermodenitrificans NG80-2] Length = 457 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 129/308 (41%), Gaps = 24/308 (7%) Query: 148 IPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +PE F +++ + A+ + + +K ++WA + P Sbjct: 6 LPEAFVAKMKKLLHEEADEFFAVYENEKTNGLRVNPLKTSPDSWAKMAPFSLTPVPFCPT 65 Query: 206 KELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + P A G++++Q+ SA + +VLDLCAAPGGKT Q + Sbjct: 66 GFYYDRSEQPGKHPYHAAGLYYIQEPSAMAVAEALRPAPGETVLDLCAAPGGKTTQLGAM 125 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCS 317 + + + A ++ +R++ L N++RL L ++ + FD +LVDAPCS Sbjct: 126 MENKGLLVANEIHPKRVKALAENVERLGLTNTVVVNETPEALAERFPGFFDKILVDAPCS 185 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ + + + A QR++L + +K GGI+V+S C+ +++E+ + Sbjct: 186 GEGMFRKEEEAASFWSQAYVEECAARQRRILQSAYAMLKEGGILVYSTCTFSPEENEQTI 245 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGMDG 432 + +L++ + +VP+ E R+ P ++ G Sbjct: 246 EWLLQTY-DDLRMVPIEKTGGIEPGRPEWTKTNRAELEHAARLWPHRVKGE--------G 296 Query: 433 FFAVALRR 440 F L++ Sbjct: 297 HFIAKLQK 304 >gi|308068497|ref|YP_003870102.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus polymyxa E681] gi|305857776|gb|ADM69564.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus polymyxa E681] Length = 558 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 129/314 (41%), Gaps = 32/314 (10%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLY-------IDLTVKFDIETWAHKLNAVMLP 199 +P F +R + A A + + + ++ E +L + Sbjct: 8 QLPTAFVKR-MEQLLGDEFEAFMTAYDHTPHAGIRVNTLKIPMEDFKERSPFELRPIPWC 66 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 G + + P + G+++VQ+ SA PV+L + +VLDLCAAPGGK+ Q+ Sbjct: 67 ATGFYIPHGTKP-GLHPYYHAGLYYVQEPSAMSPVELLNVAQDEAVLDLCAAPGGKSTQI 125 Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDA 314 + D+S R + L N++ + ++ D FD +L+DA Sbjct: 126 AAKLQGSGVLVTNDISADRTKALAKNVELYGVRNAVVLNESPDRIAAAFPHFFDKILIDA 185 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ D+ +T + K QR +L S + GG +V+S C+ +++E Sbjct: 186 PCSGEGMFRKDEDMAKQWETHSVDKCVVMQRDILRVAASMLSAGGRIVYSTCTFAPEENE 245 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---------GWIRITPDMLEKIDG 425 ++ + L + P ++VP+ S + +S E G R+ P ++E Sbjct: 246 GMIAEFLEAHP-DFDVVPVPSEAGFAPGHPEWMSEEVAAAHPELRGTARLWPHLVEGE-- 302 Query: 426 VSSGMDGFFAVALR 439 G F L+ Sbjct: 303 ------GHFIAVLQ 310 >gi|145298386|ref|YP_001141227.1| Fmu (Sun)/ nucleolar NOL1/Nop2p [Aeromonas salmonicida subsp. salmonicida A449] gi|142851158|gb|ABO89479.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Aeromonas salmonicida subsp. salmonicida A449] Length = 403 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 81/420 (19%), Positives = 150/420 (35%), Gaps = 56/420 (13%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFV---LISSLPRKKYSLQ---QLLR-VSVA------QIL 94 LV AIV+ L +D + + LLR +S+ Q+ Sbjct: 13 LVVAIVDDVLGQGLTLDRAYARHFSGIEIKPQEQARIALVTGDLLRRLSLYCALTGIQVR 72 Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 + + ++ K + N N R + + + + P W ++ Sbjct: 73 QAEKNVWPLLHSWHAFHKIVQSNHPTLDRFNEEAFRRRLTEAKKNPVL--MDGCPAWLEK 130 Query: 155 RLENFYGKER-VLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT------GGIRLK 206 G+ + A + Y+ + +K E L + T Sbjct: 131 LGSEQLGEAWPAERAALAWMPKRYLRVNTLKCTREQLQAALAKEQVNTIPVEGVATALQV 190 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263 ++ FA+G + QDA + + + V+D CA GGKT ++ Sbjct: 191 TSDAALFRTKAFADGWFEQQDAGSQLVAAALEVTPGMRVIDACAGAGGKTLHIAAMMQGK 250 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 ++ A+DV + +LE L+ R + +IE K D VL+D PCS G Sbjct: 251 GRLLAMDVEEWKLENLKQRARRAGAHNVETRVIESSKTVKRLKGTADRVLLDVPCSGLGV 310 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 ++R+PD W + + Q ++L + VK GG++V++ CS+ Q++ + V K L Sbjct: 311 LKRNPDAKWRDTAERLPVLVALQEEILQRYSQMVKVGGLLVYATCSILPQENRQQVDKFL 370 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ R+ D + ++G DGF+ + R+ Sbjct: 371 AANDN--------------------------YRLRDDH--TVSPSATGFDGFYMARIERI 402 >gi|256811186|ref|YP_003128555.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens AG86] gi|256794386|gb|ACV25055.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus fervens AG86] Length = 265 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 25/255 (9%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + P SI S P + G + Q S+ IP + +LD+CAAPGG Sbjct: 28 KETFLDYAFEVIKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPKEQDFILDMCAAPGG 87 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKL 306 KT L + + + A+++SK R++ L+ N++R+ + II D Y + Sbjct: 88 KTTHLAQLMKNNGTIVAVEISKTRVKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF 147 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS + +V +DI + Q++L+ GI +K GG +V+S C Sbjct: 148 FDKILLDAPCSGNIIKDKDRNV----SKEDIKYCSLRQKELIDIGIDLLKEGGELVYSTC 203 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S++ +++EEV++ +L+ VEL+ +N +K I++ EG +R+ P Sbjct: 204 SMEIEENEEVIRYILQKR-DDVELIKINKDEFKGINVKSGYI-EGTLRVFPPNEP----- 256 Query: 427 SSGMDGFFAVALRRL 441 FF LR++ Sbjct: 257 ------FFIAKLRKI 265 >gi|333006730|gb|EGK26227.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri K-272] gi|333018648|gb|EGK37941.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri K-227] Length = 479 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFGGRV 179 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|218548605|ref|YP_002382396.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia fergusonii ATCC 35469] gi|226725339|sp|B7LPL0|RSMF_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218356146|emb|CAQ88763.1| putative RNA AdoMet-dependent methyltransferase [Escherichia fergusonii ATCC 35469] Length = 479 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 122/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GADKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|194434523|ref|ZP_03066782.1| ribosomal RNA small subunit methyltransferase F [Shigella dysenteriae 1012] gi|194417235|gb|EDX33345.1| ribosomal RNA small subunit methyltransferase F [Shigella dysenteriae 1012] gi|332093311|gb|EGI98370.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella dysenteriae 155-74] Length = 479 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|227513344|ref|ZP_03943393.1| tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227083217|gb|EEI18529.1| tRNA/rRNA methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 467 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 18/303 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ FK + G++ L + + + +N + Sbjct: 1 MQLPDDFKNKYTKLLGQQETLQFLASFSKTANHGFRLNPLKQN--QPVNIDLSHPTAHCQ 58 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 ++ G + Q+ SA ++ VLDLCAAPGGKT + Sbjct: 59 LGYYGNVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKPGERVLDLCAAPGGKTTHVGSYMA 118 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319 + + A ++ +R + L N++R L + + FD +LVDAPCS Sbjct: 119 NLGLLIANEIDHKRSKVLMGNVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGE 178 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A QR++L + + +KPGG +++S C+ ++ E+++ Sbjct: 179 GMFRKDPDAVSYWSLDYPEECATRQRQILNETVKNLKPGGELIYSTCTFAPEEDEQIIAW 238 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 +++ + V +P+ +RI P+ +G F Sbjct: 239 LVKQYHFDILPVKKFPGMDSGRPDWADGNPDLVNCVRIFPNHF--------NGEGHFIAK 290 Query: 438 LRR 440 L++ Sbjct: 291 LKK 293 >gi|124804351|ref|XP_001347976.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|23496230|gb|AAN35889.1| RNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 634 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 11/252 (4%) Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 GI +K++ ++ SL + G + +Q +S+ +PV + VLD+CAAPG Sbjct: 257 EGESWNHVGITIKDVNTNVGSLNEYLYGYYIIQSSSSLMPVLELNIQEDDMVLDMCAAPG 316 Query: 254 GKTAQLIVSGAK---VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFD 308 GK + V A D++K R + + + R+ + + +DA FD Sbjct: 317 GKCTFMCTLKKNRGVVYANDINKLRCKAIEAHASRMGINNLIVTCIDALKIQKHLTFQFD 376 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+DAPCS TG + ++ + +I A Q+ LL I+ +K GGIVV+S CS+ Sbjct: 377 KILLDAPCSGTGVVNKNKTAR-RKTIKEIRDLAQKQKILLNNAINLLKNGGIVVYSTCSI 435 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 +++E+V+ +L+ + + +N + ++I Sbjct: 436 SVEENEQVINYILKKRDVNLLPTNINIGDPGITQYRKKQFSSKI-----SLCKRIYLHKH 490 Query: 429 GMDGFFAVALRR 440 D FF L + Sbjct: 491 NHDNFFIAKLIK 502 >gi|254576911|ref|XP_002494442.1| ZYRO0A01562p [Zygosaccharomyces rouxii] gi|238937331|emb|CAR25509.1| ZYRO0A01562p [Zygosaccharomyces rouxii] Length = 617 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 26/253 (10%) Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 ++ + I + P + G + +Q AS+ +PV N +LD+ AAPGGKT + + Sbjct: 309 QIFDSQVPIGATPEYLAGNYILQAASSFLPVIALDPQENERILDMAAAPGGKTTYISALM 368 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 + V A D +K R + L N+ RL + DA ++ FD +L+DAPCS T Sbjct: 369 KNTGCVFANDANKSRTKSLVANIHRLGCTNTIVCNYDAREFPRVIGGFDRILLDAPCSGT 428 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEE 375 G I + V +R D ++ Q++LLL I V K GGI+V+S CS+ ++ E+ Sbjct: 429 GVIGKDQSVKVSRTEKDFMQIPHLQKQLLLSAIDSVDSHSKTGGIIVYSTCSVAVEEDEQ 488 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-----IRITPD--MLEKIDGVSS 428 VV LR P K I+ +A+ EG+ + P + + + Sbjct: 489 VVDYALRKRPN-----------IKLIETGLAIGKEGFASYRGKKFHPSLKLTRRYYPHTY 537 Query: 429 GMDGFFAVALRRL 441 +DGFF ++L Sbjct: 538 NVDGFFVAKFQKL 550 >gi|156842997|ref|XP_001644568.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM 70294] gi|156115214|gb|EDO16710.1| hypothetical protein Kpol_1003p15 [Vanderwaltozyma polyspora DSM 70294] Length = 633 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 148/372 (39%), Gaps = 32/372 (8%) Query: 92 QILYLDVADYAVVDLAV-EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150 +++ D V + E K ++ R+ A + R + LL+ I Sbjct: 203 ELMADQPPDLTAVRTRILEIVKVLEDFRNLA----AEGRSRTEYIDRLLKDICSYFGYSP 258 Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKE 207 + E++ N + L +A P I + A L + I Sbjct: 259 FLAEKIFNLFSPAEALEFFEANEVPRPISIRTNTLKTRRRDLAQALVNKGVNLQPIGAWT 318 Query: 208 LPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 I + + G + +Q AS+ +PV N VLD+ AAPGGKT + Sbjct: 319 KVGLQIFDSQVPIGATSEYLAGQYILQAASSFLPVVALDPQENERVLDMAAAPGGKTTYI 378 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAP 315 + + V A D +K R + L N+ RL + DA ++ FD +L+DAP Sbjct: 379 SALMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRILLDAP 438 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQ 371 CS TG I + V +R D ++ Q++LLL I V K GG++V+S CS+ + Sbjct: 439 CSGTGVIGKDQSVKSSRTEKDFIQIPHLQKQLLLSAIDSVDANSKTGGVIVYSTCSVAVE 498 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKIDGVSSG 429 + E VV LR P V+LV A K + + P + + + Sbjct: 499 EDEAVVDYALRKRPN-VKLVESGLAIGK-----EGFTSFRGKKFHPSLKLTRRYYPHTYN 552 Query: 430 MDGFFAVALRRL 441 +DGF+ +++ Sbjct: 553 VDGFYVAKFQKI 564 >gi|293415150|ref|ZP_06657793.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B185] gi|291432798|gb|EFF05777.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B185] Length = 479 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 123/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAALSEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|309702059|emb|CBJ01373.1| conserved hypothetical protein [Escherichia coli ETEC H10407] gi|323937093|gb|EGB33373.1| NOL1/NOP2/sun family protein [Escherichia coli E1520] Length = 479 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGVILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEVVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|114793858|pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli gi|114793859|pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli gi|114793860|pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli gi|114793861|pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V D+ AAPG KT Q + + A + S R++ L N+ R + + D Sbjct: 120 RVXDVAAAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEXFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|312135035|ref|YP_004002373.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor owensensis OL] gi|311775086|gb|ADQ04573.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor owensensis OL] Length = 455 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 19/307 (6%) Query: 146 SIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200 +PE F +++ E+ + I + + T K +E + K+ + Sbjct: 1 MNLPEEFLSKMKEILKEEFEQFIKIYEFDSYKGFRVNTAKVSVEEFVDKMGIEFEKVPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P + G+ ++Q+ SA PV+ VLDLCAAPGGK+ Q Sbjct: 61 KDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 + + + DV R++ L N++ L L ++ + FD +LVDAP Sbjct: 121 ARLGQNGLLVSNDVKPTRIKALVKNVENLGLTNVVVLNNKPKEIAESYGAYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P ++ K QR ++ + +K GG +V+S C+ + +++E Sbjct: 181 CSGEGMFRKDPTTAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240 Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ L+ V + + I++ + + +RI P + G F Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292 Query: 435 AVALRRL 441 L+++ Sbjct: 293 ICKLKKV 299 >gi|329929423|ref|ZP_08283171.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Paenibacillus sp. HGF5] gi|328936510|gb|EGG32955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Paenibacillus sp. HGF5] Length = 534 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 26/260 (10%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E P + G++++Q+ SA PV+L VLDLCAAPGGK+ Sbjct: 60 PWCPTGYYIQEGERPGRHPYYHAGLYYIQEPSAMAPVELLDVTPGDRVLDLCAAPGGKST 119 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q+ + + D+ R + L NL+ + ++ + F +L+ Sbjct: 120 QIAAKLQGQGVLISNDLHPDRTKALAKNLEMYGVRNAVVLNEEPERIAGAFPEFFTKILI 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ +L + +K A QR +L + + PGG +V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDESMLKYWEESSPLKFAEMQRDILKSAAAMLCPGGRLVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------RITPDML 420 +E ++ + L P +VP++ + + S ++ +G + R+ P + Sbjct: 240 NEGMIAEFLSEHP-DFRVVPVDHSEFFSPGETDWMASQGNVKDDVLGQLAGTARLWPHKV 298 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G F L+R Sbjct: 299 RGE--------GHFMAVLQR 310 >gi|218281416|ref|ZP_03487880.1| hypothetical protein EUBIFOR_00445 [Eubacterium biforme DSM 3989] gi|218217428|gb|EEC90966.1| hypothetical protein EUBIFOR_00445 [Eubacterium biforme DSM 3989] Length = 444 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 18/248 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG---G 254 T + P + G++++Q+ SA +P Q+ N VLD CAAPG Sbjct: 58 PWTNDGFYYSSEDKPSKHPYYYAGLYYLQEPSAMLPAQVLPVDENDIVLDTCAAPGGKST 117 Query: 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 K A + + + D+S R + L N++ + D + FD +LV Sbjct: 118 KLATKLNHTGLLISNDISSSRCQGLLKNVELFGCDNAWVTSEDLTNMEQHYPETFDKILV 177 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ PD++ + D Q+ +L +S +KPGG +V+S C+ + Sbjct: 178 DAPCSGEGMFRKEPDLIKSWIEKDDTFYPPIQKNILNAAVSMLKPGGSIVYSTCTFSIHE 237 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +EEV+Q VL P + LVP+ M ++ E +R+ P ++ G Sbjct: 238 NEEVIQDVLDKHP-DLHLVPIEKID----GMMPGINMEECVRLYPHKIKGE--------G 284 Query: 433 FFAVALRR 440 F L + Sbjct: 285 HFVALLVK 292 >gi|146278411|ref|YP_001168570.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145556652|gb|ABP71265.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 399 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 90/454 (19%), Positives = 147/454 (32%), Gaps = 81/454 (17%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L ++ L S F D+ VR +V LR Sbjct: 13 MTP--AARLSAAIGILDRIL-TGAPAEQALTNWARASRFAG--SGDRAAVRDLVFDALRC 67 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKEN 117 + L + LR S +I L+ A E A + Sbjct: 68 RRSFARLGGAGTGRGL------ILGGLRASGQEIAALFTGEAHAPAPPEGPELAPQAASE 121 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA-CISPL 176 P+W L+ G + + +P+ Sbjct: 122 LEALDC-------------------------PDWLAPDLQASLGADFAPVMEALRHRAPV 156 Query: 177 YIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDA 228 ++ + + D T A L + T L + I + + +G+ +QDA Sbjct: 157 FLRVNLARGDRPTVAAGLAIEGIATRSHPLADTALEVTGNARRIQTSAAYRDGLVELQDA 216 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 ++ V+ VLD CA GGK A + ++ A D RR+ L R Sbjct: 217 ASQAVVEALPLEEGARVLDFCAGGGGKSLAMAGRARLRLWAHDADPRRMRDLPARAARAG 276 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 D+ + + FD VL D PCS +G+ RR P+ W+ + + Q + Sbjct: 277 ---VDVRLLAPGEPARHGPFDLVLADVPCSGSGSWRRAPEGKWSLTPERLQALLGIQSGI 333 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + + V+PGG + ++ CSL ++ L S + Sbjct: 334 LDETAALVRPGGHLAYATCSLLGCENGLQTDAFLARSGGWRRVR---------------- 377 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R+TP G DGFF L R+ Sbjct: 378 ----QLRLTP---------LDGGDGFFLDLLERI 398 >gi|300899079|ref|ZP_07117364.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 198-1] gi|300357288|gb|EFJ73158.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 198-1] Length = 481 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 ++ L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 ASYGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 119 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDG 179 Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ + Sbjct: 180 RVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALC 239 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + Sbjct: 240 PGGTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVF 296 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF LR+ Sbjct: 297 PQIYDCE--------GFFVARLRK 312 >gi|56807939|ref|ZP_00365759.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Streptococcus pyogenes M49 591] Length = 320 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 17/304 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + ++ + + L+ + + A LS +D+ L+ IV T+ ++ Sbjct: 9 TRGKALLVIEAIFDQGAYTNIALNQQLSNKA---LSAKDRALLTEIVYGTVSRKISLEWY 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + + + LL +S+ Q+ YLD + +A+V+ AV AK + K VN Sbjct: 66 LAHYV-KDRDKLDKWVYYLLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVN 124 Query: 126 SILRRVSREKIELL-------QRIAGISIIPEWFKERLENFYGKERVLAISDAC--ISPL 176 +ILR+ + + + + + +P W ++LE+ +G +R +AI ++ S Sbjct: 125 AILRQFTSHPLPDMETIKRRNKYYSVKYSLPVWLVKKLEDQFGSDRSVAIMESLFVRSKA 184 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 I +T +E A L+A L + + F G +QD S+ + Sbjct: 185 SIRVTDPLKLEEVAEALDAERSLLSATGLTKASGHFAASDYFTNGDITIQDESSQLVAPT 244 Query: 237 FGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDI 293 + +LD C+APGGKT+ + + KV ALD+ +LE ++ N +RL + + Sbjct: 245 LNIDGDDIILDACSAPGGKTSHIASYLKTGKVIALDLYDHKLELVKENANRLGVADNIET 304 Query: 294 IEMD 297 ++D Sbjct: 305 RKLD 308 >gi|149202698|ref|ZP_01879670.1| NOL1/NOP2/sun family protein [Roseovarius sp. TM1035] gi|149143980|gb|EDM32014.1| NOL1/NOP2/sun family protein [Roseovarius sp. TM1035] Length = 383 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 148/453 (32%), Gaps = 83/453 (18%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L + R L + + +D+ +R V LR Sbjct: 1 MTPG--ARVAAAIEVLERI-RAGEPAEKALTNWARTARYAG--SKDRAALRDHVFSVLRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 A L + ++ +D A Sbjct: 56 WRSCAAWGGGEDGR-----------ALMLGSLRLQGID-------------ADTVFTGEG 91 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A + + RVS + +P+W ER A +A I Sbjct: 92 HAPAPLTEVERVSAVPDAT-----AVRDLPDWLWERF-EASLGANAEAAVEALRVRAPIM 145 Query: 180 LTVKFDIETWAHKL----------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 L V T A V + +++ + I + +AEG +QD S Sbjct: 146 LRVNARRATRAAAQARLASEGIVAQPVEIARHALQVIDGERKITTSQCYAEGWVELQDGS 205 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + ++ + VLD CA GGK A D + +R+ L R + Sbjct: 206 SQAAMEALDLPDGARVLDYCAGGGGKVLALAARVTGAFFAHDAAPQRMRDLPVRAARAGV 265 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + P+ FD VL DAPCS +GT RR P+ W + + + Q +L Sbjct: 266 DVGLLTQ-------PEGEFDLVLCDAPCSGSGTWRRTPEAKWALTPERLEELTRLQLGIL 318 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + V P G +V++ CS+ K+++++V+ + +P Sbjct: 319 SEAAPLVAPAGRLVYATCSVLKEENQDVIARFASENPEWTVR------------------ 360 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ P +S DGFF L R+ Sbjct: 361 ---YMQHWP--------ISETGDGFFLSQLERV 382 >gi|157161302|ref|YP_001458620.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli HS] gi|170019820|ref|YP_001724774.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli ATCC 8739] gi|157066982|gb|ABV06237.1| putative RNA methylase, NOL1/NOP2/sun family [Escherichia coli HS] gi|169754748|gb|ACA77447.1| RNA methylase, NOL1/NOP2/sun family [Escherichia coli ATCC 8739] Length = 481 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFPAA---NKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|266623221|ref|ZP_06116156.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479] gi|288865004|gb|EFC97302.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479] Length = 474 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 19/253 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + + P G++++Q+ SA V+L VLDLCAAPGGKT Sbjct: 59 PWAREGYYYDSSDRPGKHPYHEAGLYYIQEPSAMAVVELLDPKPGDCVLDLCAAPGGKTT 118 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q+ + + + ++ R + L N++R+ + + + FD ++V Sbjct: 119 QIAGRLMGEGFLLSNEIHPARAKILSQNVERMGIRNAVVANETPERLAERFPEFFDGMVV 178 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + D +V A QR++L +K GG +V+S C+ ++ Sbjct: 179 DAPCSGEGMFRKDEEACRQWSPDHVVMCAARQRQILDSAARMLKAGGRMVYSTCTFSPEE 238 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVS 427 E+ ++ L P E+ + S + G RI P + E Sbjct: 239 DEQTIEMFLSEHP-EFEIEDMGVREGLSPGKPEWGISAAETLRGTYRIWPHLSEGE---- 293 Query: 428 SGMDGFFAVALRR 440 G + LR+ Sbjct: 294 ----GHYLAVLRK 302 >gi|312127718|ref|YP_003992592.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor hydrothermalis 108] gi|311777737|gb|ADQ07223.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor hydrothermalis 108] Length = 455 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 19/307 (6%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200 +PE F +++ ++ + + D + T K +E + K+ + Sbjct: 1 MNLPEEFLSKMKEILNDEFDQFIKVYDFDSYKGFRVNTAKVSVEEFIEKMGIEFEKVPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P + G+ ++Q+ SA PV+ VLDLCAAPGGK+ Q Sbjct: 61 KDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 + + + DV R++ L N++ L L I+ + FD +LVDAP Sbjct: 121 ARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P ++ K QR ++ + +K GG +V+S C+ + +++E Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240 Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ L+ V + + I++ + + +RI P + G F Sbjct: 241 IIDWFLKKHKNYEVIEIKKYEGFSDGIEINGNKNLKKAVRIYPHRVRGE--------GHF 292 Query: 435 AVALRRL 441 L+++ Sbjct: 293 ICKLKKV 299 >gi|312622543|ref|YP_004024156.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor kronotskyensis 2002] gi|312203010|gb|ADQ46337.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor kronotskyensis 2002] Length = 455 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 19/306 (6%) Query: 146 SIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200 +PE F +++ ++ + I D + T K +E + K+ + Sbjct: 1 MNLPEEFLSKMKEILNDEFDQFIKIYDFDSYKGFRVNTAKVSVEEFIDKIGIEFERIPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P + G+ ++Q+ SA PV+ VLDLCAAPGGK+ Q Sbjct: 61 KDGFYYTEELRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 + + + DV R++ L N++ L L I+ + FD +LVDAP Sbjct: 121 ARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P ++ K QR ++ + +K GG +V+S C+ + +++E Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEVEENEG 240 Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ L+ V + + I++ + + +RI P + G F Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292 Query: 435 AVALRR 440 LR+ Sbjct: 293 ICKLRK 298 >gi|218887132|ref|YP_002436453.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758086|gb|ACL08985.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 530 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 87/411 (21%), Positives = 142/411 (34%), Gaps = 68/411 (16%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96 +S++D L +V LR RI +L L + + L V+ +I++L Sbjct: 85 RHAGISRQDAALATELVYGYLRSEIRISWLLRRFLTAP-EKLPQEALLTLGVAAHEIVHL 143 Query: 97 D-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE----- 150 D + DYA VD AV ++ KL N++LR V+R + + +PE Sbjct: 144 DRIPDYAAVDWAVTHIRQRFGP-GLGKLANAVLRNVARLGDDARNAEMYHADLPEPRDFL 202 Query: 151 --------WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 W + + YG R + A + V W + ++ GG Sbjct: 203 SVHHAAPRWLVDLWCDAYGPGRAADLLAASAQAPAPAVRVNAARSGWQALRDQLIADHGG 262 Query: 203 IRLKELPE--SIVSLPG-----FAEGVWWVQDASASIPVQLFGTLNNLSV-LDLCAAPGG 254 + P G+ Q A++ + D C GG Sbjct: 263 TACGHAGVVFPVGGFPAEVAALERAGLLSRQGAASQEVLDALLPDTWEGPVWDACCGRGG 322 Query: 255 KTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--------- 304 K L+ G V D + RL LR + +RL L I+ A Sbjct: 323 KALALLERGVDVRLCSDPNAGRLRGLRADAERLGLTVPAIVRASATQPPCATDSPSAAGG 382 Query: 305 ----------------------------------KLFDAVLVDAPCSSTGTIRRHPDVLW 330 +L+DAPCS GT+ R PD+ Sbjct: 383 PAGPALPVQPVQPVTPDTSGTPHTPGTNDGTTSSCALRTILIDAPCSGLGTLSRRPDIKL 442 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R D+ A Q ++L +S + GG +V+ C+L+ ++E V+++L Sbjct: 443 RRSPADLDALAALQGRILDAALSVLPTGGRLVYITCTLNPAENEAQVERLL 493 >gi|160933800|ref|ZP_02081188.1| hypothetical protein CLOLEP_02661 [Clostridium leptum DSM 753] gi|156867677|gb|EDO61049.1| hypothetical protein CLOLEP_02661 [Clostridium leptum DSM 753] Length = 526 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 21/254 (8%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L+ + + + + S P G ++VQ+ SA+ V + VLDLCAA Sbjct: 130 RLSPAPFCSESYYIDPAAQGVGSHPLHHAGAYYVQEPSAAGAVTVLDPKPGDRVLDLCAA 189 Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306 PGGK+ Q+ + + + K R L N++R+ L + + Sbjct: 190 PGGKSTQIGTALRGKGLLWSNEFVKSRTGSLLSNVERMGLRNCVVSSCYPETLCKRLAGW 249 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VLVDAPCS G RR+PD + + A Q +L VKPGG++V+S C Sbjct: 250 FDKVLVDAPCSGEGMFRRNPDAVKEWSLNHTKACAQRQEAILQTASGAVKPGGVLVYSTC 309 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + ++E VV+ L+ + EL+ ++ + + A RI P Sbjct: 310 TFSPLENEGVVETFLKRN-RDFELIDCGVSFGRPSGLPEA------RRIFP--------- 353 Query: 427 SSGMDGFFAVALRR 440 G +G F LR+ Sbjct: 354 MDGGEGHFIAKLRK 367 >gi|260433751|ref|ZP_05787722.1| NOL1/NOP2/sun family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417579|gb|EEX10838.1| NOL1/NOP2/sun family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 387 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 79/452 (17%), Positives = 138/452 (30%), Gaps = 77/452 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L ++ L S F +D+ +R V +R Sbjct: 1 MTP--AARVQAAIEILDEIL-SGTPAEKALTGWARRSRFAG--SKDRAAIRDHVFDAVRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + A + L + EQ + Sbjct: 56 MRSYAARGGAMTGRG-----------LMLGA----------LRATGEDPEQVFTGDRHAP 94 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178 + + R + A IPEW E G++ A + ++ Sbjct: 95 APVQDHEVGRAFATV--------AEAHDIPEWLWPIFERSLGEDATAAAAALQKRAPVHL 146 Query: 179 DLT-----VKFDIETWAHKLNAVMLPTGGIR---LKELPESIVSLPGFAEGVWWVQDASA 230 + V ++ + V + + + + + +G+ +QDA++ Sbjct: 147 RVNLAKTDVTGAVDALWREGIGVRSHPACQTALEVIQGTRKVSASKAYKDGLVELQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLY 289 V + VLD CA GGK L + A DV+ R+ L R Sbjct: 207 QAVVAELDLQPGMRVLDYCAGGGGKALALAAAKGVQVFAHDVNPARMRDLPVRAQRAG-- 264 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + + FD VL DAPCS +G RR P W D + + Q ++L Sbjct: 265 -VSITILGPHEVSTSGPFDVVLTDAPCSGSGAWRRAPAGKWALSPDRLDQLPRLQLEILH 323 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 Q + V G + ++ CS+ +++ VV L+ Sbjct: 324 QASNLVAQTGTLAYATCSVLDVENDRVVDAFLQECAE----------------------- 360 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + V+ G DGF++ L R+ Sbjct: 361 ------WRQVFRNAWQVAHGTDGFYSAHLTRM 386 >gi|312969872|ref|ZP_07784055.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli 1827-70] gi|257096804|sp|A8A133|RSMF_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|257096805|sp|B1J0Q3|RSMF_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|310338157|gb|EFQ03246.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli 1827-70] Length = 479 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 Y--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGVAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCMWLKETYPDAVEFLPLGELFPAA---NKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|218705334|ref|YP_002412853.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli UMN026] gi|293405330|ref|ZP_06649322.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli FVEC1412] gi|298380972|ref|ZP_06990571.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli FVEC1302] gi|331663326|ref|ZP_08364236.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA143] gi|226725338|sp|B7NBI3|RSMF_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218432431|emb|CAR13323.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli UMN026] gi|291427538|gb|EFF00565.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli FVEC1412] gi|298278414|gb|EFI19928.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli FVEC1302] gi|331059125|gb|EGI31102.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) (16S rRNA m5C1407methyltransferase) [Escherichia coli TA143] Length = 479 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 122/264 (46%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 ++ L + G ++ E + S G++++Q+AS+ +PV Sbjct: 58 ASYGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 117 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 118 PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDG 177 Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ + Sbjct: 178 RVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALC 237 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + Sbjct: 238 PGGTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVF 294 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF LR+ Sbjct: 295 PQIYDCE--------GFFVARLRK 310 >gi|320159374|ref|YP_004191752.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O] gi|319934686|gb|ADV89549.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus MO6-24/O] Length = 404 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 75/441 (17%), Positives = 141/441 (31%), Gaps = 64/441 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V+ + L + + L +Q + + LR L + D + Sbjct: 17 ILDLVLNEGSPLDRAYSRHFSE---LNLISAEQARITMVTGDVLRRLNLYCFLADIDASN 73 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 ++ +R+ + + + K + L + + Sbjct: 74 -------ISRESMRL---------IHIWHKFH-GLALPKTNYAEAIEDDLFQAKMEEAKA 116 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 + + ++ E L L +K D + A +L Sbjct: 117 QPALWDGCPEWLDVLGERELGELWAAERSALAKPAKRYLRVNL-----LKCDRDDLAKRL 171 Query: 194 NAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 N + T ++ FA+G + QDA + + V+D Sbjct: 172 NKEGVSTVPVDGVESALEVTSNSALFKTQSFADGWFEQQDAGSQKVAAALDVKPGMRVID 231 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYC 302 CA GGKT ++ ++ A+DV + +L L+ R + + Sbjct: 232 ACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAGAHNVETRLITSSKTIKR 291 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K D VL+D PCS G ++R+PD W + + Q +L VK GG++V Sbjct: 292 LKLSADRVLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILASYSRMVKVGGMLV 351 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++ V L ++P + N Sbjct: 352 YATCSIMPCENRGQVDAFLAANPHFRLIDDEN---------------------------- 383 Query: 423 IDGVSSGMDGFFAVALRRLIQ 443 I +SG DGF+ L R+ + Sbjct: 384 ITPANSGFDGFYLARLERIAE 404 >gi|319938161|ref|ZP_08012559.1| RNA methylase [Coprobacillus sp. 29_1] gi|319806682|gb|EFW03331.1| RNA methylase [Coprobacillus sp. 29_1] Length = 440 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 118/294 (40%), Gaps = 24/294 (8%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPES 211 K A P + + LN + Sbjct: 9 MQDILKNEYPDFMKALEQPAVKAFYLNPHKKEAIKYLNKEFIQPHVVVKDGYYFNYEKYP 68 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTA 268 + P F+ G++++Q+ SA + + +LD+CAAPGGKT + + A Sbjct: 69 LGKSPFFSCGLYYIQEPSAMLVTHFLNIQKDDYILDMCAAPGGKTCAAASQLSEDGLMIA 128 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326 D+ R + L N++R L + D + + FD +++DAPCS G R+ Sbjct: 129 NDIVPLRAKILSENVERFGLKNTIVTNCDPLVFENQLKGFFDKIILDAPCSGEGMFRKSD 188 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + T + + + A QR+LL ++ +KP G +++S C+ + ++EE +Q +L Sbjct: 189 AAIETWSLEKVHECAHIQRQLLDAAMNLLKPEGQLIYSTCTYNTIENEEQIQYLLNHYNC 248 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+PL KS M+ ++ E +R+ P + G F +++ Sbjct: 249 --SLIPLK----KSHGMSPGMNMEEAVRLYPHHYQGE--------GHFIALIQK 288 >gi|330828844|ref|YP_004391796.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas veronii B565] gi|328803980|gb|AEB49179.1| tRNA and rRNA cytosine-C5-methylase [Aeromonas veronii B565] Length = 403 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 56/421 (13%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFV---LISSLPRKKYSLQ---QLLR-VSVA------QIL 94 LV AIV+ L +D + + LLR +S+ Q+ Sbjct: 13 LVVAIVDDVLGQGLTLDRAYARHFSGIELKPQEQARIALVTGDLLRRLSLYCFLTGIQVR 72 Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 + + ++ K + N N R + + + + P W ++ Sbjct: 73 QAEKNVWPLLHSWHAFHKIAQPNNPTLDRFNEEAFRRRLTEAKKNPVL--MDGCPSWLEK 130 Query: 155 RLENFYGKER-VLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT------GGIRLK 206 G+ + A + Y+ + +K + L + T Sbjct: 131 LGSEQLGEAWPAERAALAWMPKRYLRVNTLKCTRDELQAMLAKEQVTTIPVEAVETALQV 190 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263 ++ FA+G + QDA + + + V+D CA GGKT ++ Sbjct: 191 TSDAALFRTKAFADGCFEQQDAGSQLVAAALEVAPGMRVIDACAGAGGKTLHIAAMMQGK 250 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 ++ A+DV + +LE L+ R + +I K+ D VL+D PCS G Sbjct: 251 GRLLAMDVEEWKLENLKQRARRAGAHNVETRVITSSKTVKRLKESADRVLLDVPCSGLGV 310 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 ++R+PD W + + Q ++L + VK GG++V++ CS+ +++ + V K L Sbjct: 311 LKRNPDAKWRDTAERLPVLVALQEEILQRYSQMVKVGGLLVYATCSILPEENRQQVDKFL 370 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ R+ D + +G DGF+ + R+ Sbjct: 371 AANENF--------------------------RLRDDH--TVSPSETGFDGFYMARIERI 402 Query: 442 I 442 Sbjct: 403 A 403 >gi|237731873|ref|ZP_04562354.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2] gi|226907412|gb|EEH93330.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter sp. 30_2] Length = 473 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTL--NNL 243 + L V G ++ E + S G++++Q+AS+ +PV Sbjct: 56 YNWSLTPVPWCAEGFWIERDDEESVPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPE 115 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 116 RVMDVAAAPGSKTTQIAAKMNNRGAILANEFSASRVKVLHANISRCGIANVALTHFDGRV 175 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + ++ A QR+LL ++PG Sbjct: 176 FGAALPESFDAILLDAPCSGEGVVRKDPDALKNWSVESNLEIAATQRELLDSAFHALRPG 235 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++E ++Q ++ + P VE +PL+ + ++ AL+PEG++ + P Sbjct: 236 GTLVYSTCTLNRDENENIMQWLIETYPDAVEFLPLDDLFPQA---ERALTPEGFLHVFPQ 292 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 293 IYDCE--------GFFVARLRKTA 308 >gi|300717051|ref|YP_003741854.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae Eb661] gi|299062887|emb|CAX60007.1| ribosomal RNA small subunit methyltransferase F [Erwinia billingiae Eb661] Length = 478 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 68/263 (25%), Positives = 122/263 (46%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243 + +L + G + + S G++++Q+AS+ +PV Sbjct: 61 YQWQLTPIPWCEEGFWISRDDADTLPLGSTAEHLSGLFYIQEASSMLPVSALFAGCPTPE 120 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +V+D+ AAPG KT Q + + + A + S R++ L NL R + + D Sbjct: 121 TVMDVAAAPGSKTTQIAAKMGNQGAILANEYSASRVKVLHANLSRCGVSNTAMTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G IR+ D L + + A Q L+ +KPG Sbjct: 181 FGAALPEIFDAILLDAPCSGEGVIRKDADALRNWSVESTAEIAATQHDLIDSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +++S C+L++ ++++V+ + + P VE+ PLN + A++PEG++ + P Sbjct: 241 GTLIYSTCTLNRAENQQVIAWLQQQYPGAVEIEPLNELFP---GAEQAVTPEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR+L Sbjct: 298 IFDSE--------GFFVARLRKL 312 >gi|257866908|ref|ZP_05646561.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC30] gi|257872575|ref|ZP_05652228.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC10] gi|257800866|gb|EEV29894.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC30] gi|257806739|gb|EEV35561.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC10] Length = 455 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I + VLDLCAAPGGKT Q + + A ++ + Sbjct: 76 HQAGYVYSQEPSAMIVATIAAAQPGERVLDLCAAPGGKTTQLASQLQGKGLLVANEIFPK 135 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + FD ++VDAPCS G R+ P L Sbjct: 136 RAKILSENVERWGFPNVVVTNQAPQELSRHFPQFFDKIVVDAPCSGEGMFRKDPVALEEW 195 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + A Q+ +L Q ++ +KPGG +++S C+ +++E ++ ++ P +E + Sbjct: 196 QADTPDQCAIRQKDILAQAVAMLKPGGQLIYSTCTFAPEENEAMMAWLMEEYPFTIEAID 255 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L++ + A E IR+ P + + G FA L Sbjct: 256 LDNVSHGRSEWGAAPGIEKTIRLWPHLNQGE--------GHFAAKL 293 >gi|293410145|ref|ZP_06653721.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B354] gi|291470613|gb|EFF13097.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli B354] Length = 479 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEVVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|83944497|ref|ZP_00956950.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. EE-36] gi|83844699|gb|EAP82583.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. EE-36] Length = 386 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 85/452 (18%), Positives = 142/452 (31%), Gaps = 79/452 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L+ + + L S + +D+ VR V LR Sbjct: 1 MTPG--ARISAAIEILNTM-ADGVPAEQALTRWARGSRYAG--SKDRAAVRDHVFDVLRQ 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L L + + +LR ++ A Sbjct: 56 RR-----LAAHLGGGDTGRALMI-GVLRA-----------------QGIDLAPLFNG--- 89 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L + +A + +P+W + G + A++ A S I Sbjct: 90 -QGHAPLPLSDAEATPPDAPSDMATLWNLPDWIIPLFQASLGAD-AEAVAQALQSRAPIS 147 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDAS 229 + V + A L + T L + + + G +QDA+ Sbjct: 148 VRVNTAQATVADVAEALAEAGIETRTNDLCTTALTVTEGERKLRNSDSYLHGDIELQDAA 207 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V +LD CA GGK A A V A D+ RR+ L DR Sbjct: 208 SQAVVAALPEAE--RMLDYCAGGGGKALAMAARRDATVFAHDIDPRRMVDLPARADRAGA 265 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD VL DAPCS +G+ RR P+ WT + + Q K+L Sbjct: 266 T---VRQVTTDELDGAGPFDVVLCDAPCSGSGSWRRSPEGKWTFTAGRLEELTQIQDKIL 322 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + G + ++ CS+ + ++E+ L +P Sbjct: 323 DHAATLTAKNGTLAYATCSVLQTENEDRAAAFLVRNPD---------------------- 360 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + K V + DGFF +R Sbjct: 361 -------WTQVFTKRFHVDAQGDGFFTAHFKR 385 >gi|227544261|ref|ZP_03974310.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300910237|ref|ZP_07127697.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri SD2112] gi|227185753|gb|EEI65824.1| tRNA/rRNA methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892885|gb|EFK86245.1| NOL1/NOP2/sun family protein [Lactobacillus reuteri SD2112] Length = 455 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 19/234 (8%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G + Q+ SA ++ VLDLCAAPGGKT + + + A ++ +R + Sbjct: 76 GWVYSQEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTHLIAKMNNQGLLVANEIFPKRAK 135 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ P + + Sbjct: 136 ILAENLERWGAKNAVVTSESPADLEKQFPQYFDRILVDAPCSGEGMFRKEPAGIEYWSPE 195 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A Q+K+L + +KPGG +V+S C+ ++ E+ + +L P ++LVP+ Sbjct: 196 YSAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEEDEQTISWLLGDYP-ALKLVPIEK 254 Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 A +R+ P L+ G F L +P+ Sbjct: 255 AVGMDDGRPEWADGNEELKKTVRLFPHHLKGE--------GHFIAKLV-NGKPE 299 >gi|82596191|ref|XP_726160.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23481450|gb|EAA17725.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 647 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 64/260 (24%), Positives = 110/260 (42%), Gaps = 11/260 (4%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + I L + ++ SL + G + +Q +S+ IPV N V Sbjct: 273 KNKNIAIQDGPTWNNVDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNVKENELV 332 Query: 246 LDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300 LD+CAAPGGK + A D++K R + + + R+ + + D + Sbjct: 333 LDMCAAPGGKCTFICTIQKNKGIVYANDINKLRCKAIEAHAARMGINNLIVTSFDSLKIN 392 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 K FD +L+DAPCS TG + ++ + + +I A QRKLL I VK GGI Sbjct: 393 KYFKFKFDKILLDAPCSGTGVVNKNKNAR-RKTIKEIRDLAQKQRKLLNNAIDLVKNGGI 451 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 V++S CS+ +++E+V+ +L+ + + + +N + Sbjct: 452 VIYSTCSITVEENEQVINYILKKRDVNLLPIDINIGDPGITHYRKKQFSSKV-----SLC 506 Query: 421 EKIDGVSSGMDGFFAVALRR 440 ++I D FF L + Sbjct: 507 KRIYLHKHNHDNFFVAKLVK 526 >gi|332558898|ref|ZP_08413220.1| NOL1/NOP2/sun family protein [Rhodobacter sphaeroides WS8N] gi|332276610|gb|EGJ21925.1| NOL1/NOP2/sun family protein [Rhodobacter sphaeroides WS8N] Length = 387 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 87/447 (19%), Positives = 140/447 (31%), Gaps = 69/447 (15%) Query: 1 MKSGMNARL-VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M ARL + +L ++ L S F D+ VR +V LR Sbjct: 1 MTP--AARLSAAIGILDRIL-GGTPAEQALTNWGRASRFAG--SGDRAAVRDLVFDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI--LYLD---VADYAVVDLAVEQAKRD 114 L + LR++ ++ L+ QA + Sbjct: 56 RRSFARAGGAETGRGL------VLGGLRMAGQEVGDLFTGEGHAPAPPAGSELKPQAPAE 109 Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 E + + R S A P + + L ++ I+ Sbjct: 110 LEALDCPDWL-APALRESLGADFAPVMEALRHRAPVFLRVNLARTDRTAAAAELAAEGIA 168 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 L ET + E P + + + EG +QDA++ V Sbjct: 169 TRPHPL-----AETALE-------------VTENPRRLQASAAYREGRVELQDAASQAVV 210 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYAEDI 293 VLD CA GGK+ + A D RR+ L R + + Sbjct: 211 AALPLAPGDRVLDYCAGGGGKSLAMAARAPIDLSAHDADPRRMRDLPERAARAGVEVRRL 270 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D P FD VL D PCS +G+ RR P+ W+ + + + Q +L + Sbjct: 271 APGDTARRGP---FDLVLADVPCSGSGSWRRAPEGKWSLTPERLAELRAIQSTILDEVAP 327 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 V+PGG + ++ CSL ++ + L + + + Sbjct: 328 LVRPGGHLAYATCSLLASENAGQTEAFLERTSGWTRV--------------------HQL 367 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 R+TP G DGFF L+R Sbjct: 368 RLTP---------LDGGDGFFLDLLQR 385 >gi|118431884|ref|NP_148630.2| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1] gi|116063207|dbj|BAA81481.2| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1] Length = 451 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 90/426 (21%), Positives = 158/426 (37%), Gaps = 42/426 (9%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK---KYSLQQLLRVSVAQILYLDV 98 S+ D++ AI+ R +D + L + L+Q LR+S + + Sbjct: 41 SKYDRVF-TAIMYKMFRMQGVLDRAVAHALGVRPEDVIGFEPMLRQALRLSAYLAQFDET 99 Query: 99 ADYAVVDLAVEQ------AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWF 152 D ++ + ++ V L + + ++P Sbjct: 100 RDRRLISALLRHGLPLLASRYGWRKARLVHKVLERLIDEPWKPSTREEEFMARYMVPIDI 159 Query: 153 KERLENFYG-KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 + + + DA P + V ++ A+ + E Sbjct: 160 VIMARRVVAGDDELEKLLDAINRPPVNSVRVNTLKASFDEVYKAIRSSGLYAWPSDRVEG 219 Query: 212 IVSLPG---------FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 ++ G AEG QD S++ L VLD+CAAPGGKT L Sbjct: 220 VIRYRGPFNDTLARLLAEGKIVPQDESSAAAAPLLQPRPGEIVLDMCAAPGGKTTHLAEL 279 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAP 315 A++ D+ RL +++ ++ A + PK D +L+D P Sbjct: 280 SRLQARILGFDIYWDRLRRMKTLVEATASEAAVAVVKADAANAPKILGRGSVDKILLDPP 339 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS+TG + ++ D W I++ Q+ LL + VKPGG+++++ CS+ ++ E+ Sbjct: 340 CSTTGGLHKNVDARWRLTRRKIMELQELQKTLLDAAVETVKPGGLILYTVCSILAEEGED 399 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 VV L +E+VPLN Y +S + G +R P G+ GFF Sbjct: 400 VVLHALEK-WGNLEIVPLNGPYDESPILP------GTMRAWPH--------RHGVTGFFY 444 Query: 436 VALRRL 441 LR+ Sbjct: 445 ALLRKK 450 >gi|292659864|pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 58 PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V +R+ L N++R A A F VL+D Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + + A Q+ LL Q + PGG++V+S C+ +++ Sbjct: 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E VV L++ P +E L+ + + +PE R+ P LE Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290 Query: 431 DGFFAVALRR 440 G F R+ Sbjct: 291 -GHFLARFRK 299 >gi|68067801|ref|XP_675834.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56495242|emb|CAI04459.1| conserved hypothetical protein [Plasmodium berghei] Length = 533 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 11/260 (4%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + I L + ++ SL + G + +Q +S+ IPV N V Sbjct: 238 KNKNIAIQDGSNWNNVDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNIKENELV 297 Query: 246 LDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300 LD+CAAPGGK + A D++K R + + + R+ + I D + Sbjct: 298 LDMCAAPGGKCTFICTIQKNKGIVYANDINKLRCKAIEAHAARMGINNLIITSFDSLKIN 357 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 K FD +L+DAPCS TG + ++ + + +I + QRKLL I VK GGI Sbjct: 358 KYFKFKFDKILLDAPCSGTGVVNKNKNAR-RKTIKEIRDLSQKQRKLLNNAIDMVKNGGI 416 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 V++S CS+ +++E+V+ +L+ + + + +N I + Sbjct: 417 VIYSTCSITVEENEQVINYILKKRDVNLLPIDINIGDPGIIHYRKKQFSSKI-----SLC 471 Query: 421 EKIDGVSSGMDGFFAVALRR 440 ++I D FF L + Sbjct: 472 KRIYLHKHNHDNFFVAKLVK 491 >gi|254478823|ref|ZP_05092189.1| NOL1/NOP2/sun family putative RNA methylase protein [Carboxydibrachium pacificum DSM 12653] gi|214035230|gb|EEB75938.1| NOL1/NOP2/sun family putative RNA methylase protein [Carboxydibrachium pacificum DSM 12653] Length = 460 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 16/251 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 E E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYEKEEKAGNHLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ ++R+ L N+ R+ + ++ + + FD ++V Sbjct: 120 HIASKIGDEGLIVANEIDRKRIRALEENVARMGIRNIVLLNERPERLIQAFEGYFDKIVV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + QR +L +K GG++V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPAARRIWSLNNVLSCSITQRNILRSVAPLLKRGGVLVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSG 429 +E V++K L +P + S ++ P E +R+ P + Sbjct: 240 NEGVIKKFLEENPEFEVVESELSHFFDKGHPEWVDGPKELEKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRR 440 G F L++ Sbjct: 294 --GHFIAKLKK 302 >gi|20808537|ref|NP_623708.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter tengcongensis MB4] gi|20517161|gb|AAM25312.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter tengcongensis MB4] Length = 460 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 106/251 (42%), Gaps = 16/251 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 E E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYEKEEKAGNHLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ ++R+ L N+ R+ + ++ + + FD ++V Sbjct: 120 HIASKIGDEGLIVANEIDRKRIRALEENVARMGIRNIVLLNERPERLIQAFEGYFDKIVV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + QR +L +K GG++V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPAARRIWSLNNVLSCSITQRNILRSVAPLLKRGGVLVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSG 429 +E V++K L +P + S ++ P E +R+ P + Sbjct: 240 NEGVIKKFLEENPEFEVVESELSHFFDKGHPEWVDGPKELEKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRR 440 G F L++ Sbjct: 294 --GHFIAKLKK 302 >gi|325518100|gb|EGC97891.1| 16S rRNA methyltransferase B [Burkholderia sp. TJI49] Length = 362 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 143/357 (40%), Gaps = 27/357 (7%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL----LQRIAGISIIPEWFKE 154 + VVD AV +E +VN++LRR RE+ L W+ + Sbjct: 17 PPFTVVDQAVTAIGARRECAFAKGMVNAVLRRFLRERDALVAALQADPVARWNYRAWWID 76 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKE 207 ++ + ++ + L V T L+ Sbjct: 77 AVKRAWPDAWQAILAAGDRQGP-LTLRVNARRSTVDAYLDTLRANGIEAAAIGRHAVRLA 135 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKV 266 + +PGFA+GV VQDA A + + G + + VLD CAAPGGKT L+ + +V Sbjct: 136 SALPVERIPGFADGVVSVQDAGAQLAAEWLGARDGMRVLDACAAPGGKTGHLLELADVEV 195 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIR 323 AL+ R ++ NL RL L A D+ D + + FD +L D PCS++G +R Sbjct: 196 VALESDATRATRIGENLARLSL-AADVRVGDAGSPDAWHDGRPFDRILADVPCSASGIVR 254 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 RHPD+ W R DI QR++L VKPGG +++ CS+ ++ E + + Sbjct: 255 RHPDIRWLRREADIAALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGELQARWFEAA 314 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L +++ + ++ DGFF ++ Sbjct: 315 CEDAVRLDAPGQLLPRAVPDG----------VRGGAAVGALDQNTDHDGFFYARFQK 361 >gi|292659860|pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 gi|292659861|pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 gi|292659862|pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P2 In Complex With S-Adenosyl-L- Methionine gi|292659863|pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P2 In Complex With S-Adenosyl-L- Methionine Length = 464 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 58 PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V +R+ L N++R A A F VL+D Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + + A Q+ LL Q + PGG++V+S C+ +++ Sbjct: 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E VV L++ P +E L+ + + +PE R+ P LE Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290 Query: 431 DGFFAVALRR 440 G F R+ Sbjct: 291 -GHFLARFRK 299 >gi|110679930|ref|YP_682937.1| NOL1/NOP2/sun family protein, putative [Roseobacter denitrificans OCh 114] gi|109456046|gb|ABG32251.1| NOL1/NOP2/sun family protein, putative [Roseobacter denitrificans OCh 114] Length = 386 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 79/435 (18%), Positives = 133/435 (30%), Gaps = 75/435 (17%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 V+ + + L S F +D+ VR V LR + A+ Sbjct: 15 DVIAQGAAAEQALTRWARLSRFAG--SKDRAAVRDHVFDVLRLRDTVAALGGGASGR--- 69 Query: 77 RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 L + + + Y + A + + L Sbjct: 70 --------ALMLGL--LRYNGLDPSAFFN--------------GQGYAPAALSAQELAYS 105 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-- 194 G+ +P+W E AI+ A + L V ++ Sbjct: 106 ADRDTACGLWNLPDWLVPEF-ERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTAMHSL 164 Query: 195 --------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + + + E + + F G VQDA++ V L Sbjct: 165 ATDGVVTTANPVCATALTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQ--RCL 222 Query: 247 DLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 D CA GGK A G +V A D R+ + R I ++ Sbjct: 223 DYCAGGGGKALAMAAQDGRRVFAHDRDPDRMRDIAPRAKRAGA---VIKQLATDRLHAHG 279 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD VL DAPCS +G RR P+ W + + + Q+ +L + V G +V++ Sbjct: 280 PFDLVLCDAPCSGSGAWRRSPEAKWRFTSARLQELQAMQQDILREAAPLVDAQGWLVYAT 339 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ + ++E+ + L +P L++ Sbjct: 340 CSVLRAENEDQITAFLSQNPD-----------------------------WRCTLQRRWP 370 Query: 426 VSSGMDGFFAVALRR 440 +S DGF+ L R Sbjct: 371 LSENCDGFYTAHLTR 385 >gi|55981356|ref|YP_144653.1| rRNA methylase [Thermus thermophilus HB8] gi|55772769|dbj|BAD71210.1| probable rRNA methylase [Thermus thermophilus HB8] Length = 456 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 58 PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V +R+ L N++R A A F VL+D Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + + A Q+ LL Q + PGG++V+S C+ +++ Sbjct: 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E VV L++ P +E L+ + + +PE R+ P LE Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290 Query: 431 DGFFAVALRR 440 G F R+ Sbjct: 291 -GHFLARFRK 299 >gi|256847337|ref|ZP_05552783.1| fmu domain-containing protein [Lactobacillus coleohominis 101-4-CHN] gi|256716001|gb|EEU30976.1| fmu domain-containing protein [Lactobacillus coleohominis 101-4-CHN] Length = 461 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 18/227 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G + Q+ SA ++ VLDLCAAPGGK+ + + A ++ K+R + Sbjct: 76 GWVYSQEPSAMYVGEVVDPQPGERVLDLCAAPGGKSTHLIAKMHDQGLLVANEIFKKRAQ 135 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R ++ D+ + FD +LVDAPCS G R+ P + + D Sbjct: 136 ILASNLERWGTKNTVVLNERPDSLEQHFPAFFDRILVDAPCSGEGMFRKEPAGITYWNPD 195 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A QRK+L + +K GG +V+S C+ ++ E+ + +L+ P +E+V + Sbjct: 196 YPAECANRQRKILQSALKMLKAGGTLVYSTCTFAPEEDEQNIAWLLKEYPG-LEMVDIRK 254 Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +R+ P G F L Sbjct: 255 FPGMDNGRPDWADGNPELAKAVRLFPHHYRGE--------GHFIAKL 293 >gi|197248818|ref|YP_002146175.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226725341|sp|B5F3P3|RSMF_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|197212521|gb|ACH49918.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 479 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 126/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++EEV + + VE +PL+ + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLDDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKI 311 >gi|332663955|ref|YP_004446743.1| Fmu (Sun) domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332769|gb|AEE49870.1| Fmu (Sun) domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 401 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 72/434 (16%), Positives = 134/434 (30%), Gaps = 69/434 (15%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 V++ ++ + + ++ V V +R+ + AV + Sbjct: 22 QVLQDNRFADHAIERQLKAHPHWSIEEQ--GFVAEQVYALVRYYRMLCAVAG---KTPAS 76 Query: 77 RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 + + +L K F L + + Sbjct: 77 MLDWEDL----LGAWLML-----------------KNHPLGAQFKFLTRNEINN---AYH 112 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 + + A IP+W + L E+ A + L V A + Sbjct: 113 TIYKVRAVRESIPDWL-DELGFQELGEQWEPTLKALNESPSLVLRVNRLKTDVATLQQQL 171 Query: 197 MLPT-------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + E + F G + VQD S+ + V+D C Sbjct: 172 QQTDIIGKAIAEDTLVIEQRGKLYHTAAFRHGWFEVQDYSSQQVAPFLEVEPGMRVIDAC 231 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPK 304 A GGK L + + ++ ALD ++LE+LR R + + E Sbjct: 232 AGNGGKALHLASLMQNKGRIIALDTDDKKLEQLRVRARRAGVSIIETRLIESTKTIKRLA 291 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 + D +L+D PCS G +RR+PD W + + + Q++LL +P G +V++ Sbjct: 292 QSADRLLLDVPCSGLGVLRRNPDTRWRLSPEHLQELIALQKQLLSSYAKMCRPDGKMVYA 351 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS+ +++ + + + E I P Sbjct: 352 TCSILPSENQLQIDAYIN-------------------GVGSNYKVEASKHIFPQ------ 386 Query: 425 GVSSGMDGFFAVAL 438 +G DGF+ L Sbjct: 387 --EAGFDGFYMARL 398 >gi|195333786|ref|XP_002033567.1| GM21395 [Drosophila sechellia] gi|194125537|gb|EDW47580.1| GM21395 [Drosophila sechellia] Length = 865 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 E+ E+L + ++ +A + + A L + Sbjct: 319 CLYYSYNEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVN 378 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + P + G + +Q AS+ +PV N +LD+C+A Sbjct: 379 LDPLGKWTKVGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSA 438 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-F 307 PGGK + + + + + A D ++ R++ + N RL + + D + F Sbjct: 439 PGGKGSHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGF 498 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVF 363 D VL+DAPC+ TG + + P V T+ D+ + QRKLLL I GG +V+ Sbjct: 499 DRVLLDAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVY 558 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLE 421 S CS+ +++E V+ L+ V+LVP + + R P ++ + Sbjct: 559 STCSVLPEENEWVIDYALKKR--NVKLVPTGLDFGV-----EGFTKFRQHRFHPSLNLTK 611 Query: 422 KIDGVSSGMDGFF 434 + + MDGF+ Sbjct: 612 RYYPHTHNMDGFY 624 >gi|41615318|ref|NP_963816.1| hypothetical protein NEQ536 [Nanoarchaeum equitans Kin4-M] gi|40069042|gb|AAR39377.1| NEQ536 [Nanoarchaeum equitans Kin4-M] Length = 332 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 17/266 (6%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 +E ++ + G ++ ESI + F G + Q+A++ IP NL Sbjct: 74 SLEEEGWEIEPIPFYKYGFWVRHESESIGNTWQFQMGYIYSQEAASMIPPLALDLEENLL 133 Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +LD+ AAPG KT + + + A D+S R+ L N+ R ++ Sbjct: 134 ILDMAAAPGSKTTQIAMHTQNNSYIIANDISLDRISALAENVQRTGSLVTITMQDGRNFK 193 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 K FD +L+DAPCS G +R+ L + + I + + QR+L+ +KP GI+ Sbjct: 194 KYKNTFDRILLDAPCSGVGALRKSYKTLQMWNPNMIERLSKLQRQLIQAAFEALKPNGIL 253 Query: 362 VFSNCSLDKQDSEEVVQKVLRSS------PIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 V+S C+L+ ++E VV +L PI +E + + + + + +RI Sbjct: 254 VYSTCTLEPLENEFVVNWLLERYENAKIEPIRIENLKSSEPILEWENYKFFDDIKYTLRI 313 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P + +GF+ +R+L Sbjct: 314 YP--------WDNDTEGFYIAKIRKL 331 >gi|239827028|ref|YP_002949652.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70] gi|239807321|gb|ACS24386.1| RNA methylase, NOL1/NOP2/sun family [Geobacillus sp. WCH70] Length = 454 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 124/310 (40%), Gaps = 24/310 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVM---LPT 200 +P F E++E E S +K D ET+ + + Sbjct: 1 MKLPSEFIEKMERLLEDEASRFFSTYHEEKANGLRFNPLKIDRETFLTLVPFALSPVPFC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + E P A G++++Q+ SA ++ VLDLCAAPGGKT Q Sbjct: 61 PTGFYYDAHEQPGKHPYHAAGLYYIQEPSAMFVAEVLKPNPGEFVLDLCAAPGGKTTQLA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 ++ + + A ++ +R++ L N++R + + FD +LVDAP Sbjct: 121 AMMKNQGLIIANEIHPKRVKALSENIERFGITNALVTNETPEKLAKYFPGFFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + + + A QR +L +K GGI+V+S C+ +++E+ Sbjct: 181 CSGEGMFRKDEEAVQFWSQAHVEQCAIKQRHILDCAYEMLKEGGILVYSTCTFSPEENEQ 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGM 430 ++ L++ +EL+ + + + E R+ P L+ Sbjct: 241 TIEAFLQTY-DDLELLSIEKVHGIQPGRREWTNTNFEEMERTARLWPHSLKGE------- 292 Query: 431 DGFFAVALRR 440 G F +++ Sbjct: 293 -GHFVAKIKK 301 >gi|257096810|sp|A9MNH4|RSMF_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWLLTPIPWCDEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L NL R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNHGAILANEFSASRVKILHANLCRCGVANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLESAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PLN + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKI 311 >gi|326204453|ref|ZP_08194311.1| RNA methylase, NOL1/NOP2/sun family [Clostridium papyrosolvens DSM 2782] gi|325985485|gb|EGD46323.1| RNA methylase, NOL1/NOP2/sun family [Clostridium papyrosolvens DSM 2782] Length = 470 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 17/253 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 T + ++ P + G++++Q+ SA +P + G VLDLCAAPGGKT Sbjct: 58 PWTKDGFYYQEGDNPGRHPYYYAGLYYIQEPSAMLPGAVIGVKPGDKVLDLCAAPGGKTV 117 Query: 258 QL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 Q+ + + A D++ R++ L N++ + ++ + + FD ++V Sbjct: 118 QMATQMQGQGLLVANDINSERVKALVKNVELAGVRNAIVLNETPNKLAVNFENYFDKIMV 177 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ D + + + K Q +L + + +KPGGI+++S C+ ++ Sbjct: 178 DAPCSGEGMFRKDEDAIKSWEKYKCEKCCTMQWDILQKVDTMLKPGGIILYSTCTFSPEE 237 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSS 428 E ++++ + ELV + A R+ P L Sbjct: 238 DELMIERFMDEHKGNYELVEIPKAGGIEGGRTHWSKGGYDFGKAARLWPHRL-------- 289 Query: 429 GMDGFFAVALRRL 441 +G FA LR+ Sbjct: 290 NGEGHFAALLRKK 302 >gi|302767744|ref|XP_002967292.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii] gi|300165283|gb|EFJ31891.1| hypothetical protein SELMODRAFT_86634 [Selaginella moellendorffii] Length = 505 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 125/319 (39%), Gaps = 35/319 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 A E+ E + + +A +P + L ++T L V++ G Sbjct: 187 ASYYGYNEFLAEYFMQMFPVAEAVEFLEANETPRPVSLRTNT-LKTRRRDLAGVLINRGV 245 Query: 203 I------------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + + + P + G + +Q AS+ +PV ++D+ A Sbjct: 246 NLDPIGKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQEKERIVDVAA 305 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---K 304 APGGKT + + + + A ++ +RL+ L N+ R+ + + D + + Sbjct: 306 APGGKTTYIAALMKNTGLIYANELKVQRLKSLTANIYRMGVTNSVVCNYDGRELPKVLGR 365 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGI 360 D VL+DAPCS TG + + V T+ +DI + A Q++L+L I V GG Sbjct: 366 NSVDRVLLDAPCSGTGIVGKDQSVKLTKSLEDIQRCAFLQKELILAAIDLVDANSSSGGY 425 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM- 419 +V+S CS+ +E VV L+ + V L I R P + Sbjct: 426 LVYSTCSVT---NEAVVDYALKKRHVKVVPTGLEFGKEGFIRFREK-------RFHPSLA 475 Query: 420 -LEKIDGVSSGMDGFFAVA 437 + MDGFF Sbjct: 476 NTRRFYPHVHNMDGFFVAK 494 >gi|161503027|ref|YP_001570139.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864374|gb|ABX20997.1| hypothetical protein SARI_01091 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 513 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWLLTPIPWCDEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L NL R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNHGAILANEFSASRVKILHANLCRCGVANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLESAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PLN + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKI 345 >gi|297565757|ref|YP_003684729.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus silvanus DSM 9946] gi|296850206|gb|ADH63221.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus silvanus DSM 9946] Length = 457 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 63 PWCAEGFYYPPDARPGPHPFFYAGLYYIQEPSAQAVGVLADPRPGERVLDLAAAPGGKTT 122 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V +R L N++R A ++ FD V++D Sbjct: 123 HLAARMGGQGLLIANEVDSKRTRGLLENVERWGARLAVVGAPVERLAEVWGAYFDRVVLD 182 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ P+ + +SA QR L+ V+PGG++V+S C+ +++ Sbjct: 183 APCSGEGMFRKEPEAMRHWGPTAPERSARVQRSLIDHAGRLVRPGGVLVYSTCTFAPEEN 242 Query: 374 EEVVQKVLRSSPIPV-ELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E+V+ L +P V E L+ ++ + E R+ P L Sbjct: 243 EQVIAHFLSRNPEFVLESAQLHPSFAPGVPAWGGGDLELAKTARLWPHRLRGE------- 295 Query: 431 DGFFAVALRR 440 G F LR+ Sbjct: 296 -GHFLAKLRK 304 >gi|291085245|ref|ZP_06352509.2| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Citrobacter youngae ATCC 29220] gi|291072453|gb|EFE10562.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Citrobacter youngae ATCC 29220] Length = 462 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L V G ++ E + S G++++Q+AS+ +PV Sbjct: 45 YNWSLTPVPWCAEGFWIERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNTPE 104 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 105 RVMDVAAAPGSKTTQIAARMNNHGAILANEFSASRVKVLHANISRCGIANVALTHFDGRV 164 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDAVL+DAPCS G IR+ PD L + + A QR LL ++PG Sbjct: 165 FGAALPETFDAVLLDAPCSGEGVIRKDPDALKNWSVESNLDIAATQRDLLDSAFHALRPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 GI+V+S C+L++ ++E ++Q ++ + P VE +PL + ++ AL+PEG++ + P Sbjct: 225 GILVYSTCTLNRDENENIMQWLIETYPDAVEFLPLGDLFPQA---ERALTPEGFLHVFPQ 281 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 282 IYDCE--------GFFVARLRKTA 297 >gi|257876507|ref|ZP_05656160.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC20] gi|257810673|gb|EEV39493.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus EC20] Length = 455 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 13/226 (5%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I + VLDLCAAPGGKT Q + + A ++ + Sbjct: 76 HQAGYVYSQEPSAMIVATIAAAQPGERVLDLCAAPGGKTTQLASQLQGKGLLVANEIFPK 135 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + FD ++VDAPCS G R+ P L Sbjct: 136 RAKILSENVERWGFPNVVVTNQAPQELSRHFPQFFDKIVVDAPCSGEGMFRKDPVALEEW 195 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + A Q+ +L Q ++ +KPGG +++S C+ +++E ++ ++ P +E + Sbjct: 196 QADTPDQCAIRQKDILAQAVAMLKPGGQLIYSTCTFAPEENEAMMAWLMEEYPFTIEAID 255 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L++ + A E IR+ P + + G FA L Sbjct: 256 LDNVSHGRSEWEAAPGIEKTIRLWPHLNQGE--------GHFAAKL 293 >gi|253741386|gb|EES98257.1| Nucleolar protein NOP2 [Giardia intestinalis ATCC 50581] Length = 497 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 137/375 (36%), Gaps = 35/375 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ------RIAGI 145 ++ + D+ VD ++ R + + I+ Sbjct: 128 ELRHADI-YDPRVDEVTNIEGIRNRILRVVGVLADFKSRRHPDLSRMFYLELLKKDISAA 186 Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM----- 197 + + L +G + AC P + + V A L A Sbjct: 187 YGYSDGVIDILMGLFGPIDFHSFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDP 246 Query: 198 ---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ I + P + G + +QDA++ +P +LD+ AAPGG Sbjct: 247 LGDWCKDGLQIFSSQVPIGATPEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGG 306 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAV 310 KT L + + A D+++ R+ L+ NL R+ + I DA + FD V Sbjct: 307 KTTHLGALMQDSGMILANDMNRDRIPALQANLARMGVTCAVISCSDARELAQCTGNFDRV 366 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP---GGIVV-FSNC 366 L+DAPCS G + + + R +DI + + Q++LL + +V +S C Sbjct: 367 LLDAPCSGLGVVSKDASIKANRTFEDIHRLSHLQKELLNHAFDLLAKHPSNPRLVCYSTC 426 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKID 424 S+ ++E V+ +L VE+V L ++ K ++ + P + Sbjct: 427 SVTLSENEAVIDYIL--HKRNVEVVDLPFSFGKP-----GITKFNGMSYHPSIQKARRFY 479 Query: 425 GVSSGMDGFFAVALR 439 GFF LR Sbjct: 480 PHIHNTHGFFICLLR 494 >gi|220929585|ref|YP_002506494.1| RNA methylase, NOL1/NOP2/sun family [Clostridium cellulolyticum H10] gi|219999913|gb|ACL76514.1| RNA methylase, NOL1/NOP2/sun family [Clostridium cellulolyticum H10] Length = 471 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 130/311 (41%), Gaps = 24/311 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+++ G E + ++ I P + L V + L + Sbjct: 1 MKLPIEFVEKMQGLMGDEFASYL-ESYIKPRFYGLRVNTLKISVEEFLKIAPFHLEPVPW 59 Query: 206 ------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 + ++ P + G++++Q+ SA +P + G VLDLCAAPGGKT Q+ Sbjct: 60 ARDGFYYQEGDNPGRHPYYYAGLYYIQEPSAMLPGAVIGVKPGERVLDLCAAPGGKTVQM 119 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDA 314 + + A D++ R++ L N++ + ++ D + FD ++VDA Sbjct: 120 AAQMKGQGLLVANDINSDRVKALVKNVELAGVRNALVLNEPPDKLAARFQNYFDRIMVDA 179 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ D + + + K Q +L + +KPGG++++S C+ ++ E Sbjct: 180 PCSGEGMFRKDEDAIKSWEKFKCEKCCGMQWNILEKVDMMLKPGGVILYSTCTFSPEEDE 239 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDM----AMALSPEGWIRITPDMLEKIDGVSSGM 430 ++++ + EL+ + A + + R+ P L Sbjct: 240 LMIERFMDEHKGMYELLEIPKAGSVEGGRTQWSKGGYNFDKAARLWPHKL--------NG 291 Query: 431 DGFFAVALRRL 441 +G FA L++ Sbjct: 292 EGHFAALLQKK 302 >gi|154342166|ref|XP_001567031.1| nucleolar protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064360|emb|CAM42450.1| putative nucleolar protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 625 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 122/313 (38%), Gaps = 24/313 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA---------- 195 E + + + + +A + V + A Sbjct: 222 YEYNELLMDSVLRLFPPAEAVDFLEAMEKTRPTTIRVNTLKAKRRDLVQALVKRGMNVEP 281 Query: 196 -VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ E I + G + +Q A++ +PV + VLD+ AAPGG Sbjct: 282 LEKWSKVGLQVFESNVPIAGTIEYLAGQYMLQAAASFLPVMALAPQEHERVLDMSAAPGG 341 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 KT + + + + A DVS+ R + L NL RL + + D Y + FD V Sbjct: 342 KTTYIAQLMKNTGVLFANDVSEPRCKSLNSNLQRLGVTNCIVTNYDGTGYERVMRNFDRV 401 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS TG I R + + +DI +++ QR LLL I + G VV+S CS Sbjct: 402 LLDAPCSGTGIISRDKSIKMGKQYEDIQRASQLQRALLLSAIDACRVAGYVVYSTCSFLV 461 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKIDGVSS 428 ++ E +V L+ + V + L + R ++ + Sbjct: 462 EEDEAIVDFALKRRDVQVVEMGLPFGRP-------GFTKYRHHRYHDSLELSRRYFPHVH 514 Query: 429 GMDGFFAVALRRL 441 MDGFF L++L Sbjct: 515 NMDGFFVCKLKKL 527 >gi|327252957|gb|EGE64611.1| NOL1/NOP2/sun family RNA methylase domain protein [Escherichia coli STEC_7v] Length = 479 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERNDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGIRNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNQEENEAVCRWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|223933469|ref|ZP_03625453.1| Fmu (Sun) domain protein [Streptococcus suis 89/1591] gi|302023879|ref|ZP_07249090.1| NOL1/NOP2/sun family protein [Streptococcus suis 05HAS68] gi|330832922|ref|YP_004401747.1| Fmu (Sun) domain-containing protein [Streptococcus suis ST3] gi|223897842|gb|EEF64219.1| Fmu (Sun) domain protein [Streptococcus suis 89/1591] gi|329307145|gb|AEB81561.1| Fmu (Sun) domain protein [Streptococcus suis ST3] Length = 433 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 31/311 (9%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F ++ + G E A ++ E+ +L+ Sbjct: 1 MQLPQDFIDKYNHLLGSE-AQAFFESFEQDPISGFRTNPLKES---QLDFEQPIPNMTWS 56 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 S P G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 57 YYGKVS-GKSPEHVTGLVYSQEPAAQVVGQIAAPEKGMKVLDLAAAPGGKSTHLLSYLEN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D FD +++DAPCS G Sbjct: 116 TGLLVSNEISNKRAKILAENIERFGARNVVVTNESADRLAKVFPGYFDMIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + + A QR++L ++ + PGG +++S C+ +++EEVV + Sbjct: 176 MFRKDPDAIQYWSKHYPAQCASLQREILESALNMLAPGGQLIYSTCTWSPEENEEVVTWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR- 439 L + + +P + + + R+ P F R Sbjct: 236 LEQYDLELIDIPKINGMVEGVGYPEVA------RMYPHHFAGEGQ--------FVAKFRF 281 Query: 440 ------RLIQP 444 + ++P Sbjct: 282 LGEVSQKKLKP 292 >gi|87199770|ref|YP_497027.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444] gi|87135451|gb|ABD26193.1| Fmu (Sun) [Novosphingobium aromaticivorans DSM 12444] Length = 395 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 96/456 (21%), Positives = 155/456 (33%), Gaps = 76/456 (16%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISL----TCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + LL V+ + + + F + +D+ +R +V Sbjct: 1 MTPS--ARVQAAIDLLDAVIAAAKAQGASADRIAADWFRSRRF--VGSKDRRAIRELVWS 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R +P + +LRV+VA Sbjct: 57 AIRVCGE------------VPESGRA--AMLRVAVA------------------------ 78 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY--GKERVLAISDACI 173 + A L + I + A P W ERL E+ + A + Sbjct: 79 -DPGIAALFDG--STYGPAPIRAGEVAAEGGNAPAWLSERLRQSGLGEDEQAALLGRAPL 135 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 L + D + + + S P F EG++ VQD+ + I Sbjct: 136 DIRANTLRITRDELRLRLPVELEVTAAPDALRLPSGTAAESWPEFQEGLFEVQDSGSQIA 195 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 +V+DLCA GGKT + + ++ A D+ + RL +L R + A Sbjct: 196 CMALDVKPGEAVVDLCAGGGGKTLSLGAAMANTGELLACDIDRARLSRLPDRAARAGVLA 255 Query: 291 ----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + DAV+VDAPCS TGT RR+P+ W D I + Q Sbjct: 256 QTRLLNPGKEAEMLADWAGRADAVMVDAPCSGTGTWRRNPEARWRLDPRSIERYCTMQAN 315 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L G V+PGG + + CSL + + ++ L + P +P A + Sbjct: 316 VLEIGAGLVRPGGRLTYVVCSLIDAEGRDRIEAFLAAHPDWSVAMPPLPA-GRPHGKGWR 374 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L+P G G DGFF + R + Sbjct: 375 LTPLG----------------DGTDGFFFATIVRRV 394 >gi|307265300|ref|ZP_07546858.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919744|gb|EFN49960.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter wiegelii Rt8.B1] Length = 469 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 16/252 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ K+R++ L N++R+ + I + + FD +LV Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLTTAFEGYFDKILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + Q+ +L S +KPGGI+V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVISCSIIQKNILRNVASLLKPGGILVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSG 429 +E V++K L P S Y+ P + +R+ P + Sbjct: 240 NEGVIKKFLEERPEFEVEESELSKYFDRGHPEWVTGPLELKKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRRL 441 G F LR+ Sbjct: 294 --GHFIAKLRKK 303 >gi|26248098|ref|NP_754138.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli CFT073] gi|227885738|ref|ZP_04003543.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 83972] gi|300994213|ref|ZP_07180770.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 45-1] gi|301050816|ref|ZP_07197670.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 185-1] gi|306814337|ref|ZP_07448503.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli NC101] gi|26108501|gb|AAN80703.1|AE016761_278 Hypothetical protein yebU [Escherichia coli CFT073] gi|227837311|gb|EEJ47777.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli 83972] gi|300297505|gb|EFJ53890.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 185-1] gi|300406341|gb|EFJ89879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 45-1] gi|305852496|gb|EFM52947.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli NC101] gi|307553852|gb|ADN46627.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli ABU 83972] gi|315290364|gb|EFU49740.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 153-1] Length = 481 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + VE +PL + AL+ +G++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|124265465|ref|YP_001019469.1| Sun protein [Methylibium petroleiphilum PM1] gi|124258240|gb|ABM93234.1| Sun protein [Methylibium petroleiphilum PM1] Length = 449 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 105/445 (23%), Positives = 169/445 (37%), Gaps = 52/445 (11%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 SLT L + +A+ LR L A+ ++ + P + Sbjct: 28 GRSLTDALATVPAAP---------RPGTQALAFRVLRGLGLARALRCQLVPKAPPAWVDA 78 Query: 82 LQQLLRVSVAQ-ILYLDVAD---YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 L Q D + +V AVE + R A VN++LRR RE+ Sbjct: 79 LLLSALALSHQDAESADTPPYAPHTLVSQAVEA--AKQRARAQAGFVNAVLRRHLREQAT 136 Query: 138 LLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTV-KFDIETWAH 191 A + P W+ E L+ + + + + + + D ++ Sbjct: 137 QAAAAAKDPVAVWNHPRWWIETLQRDWPGQWAELLRANDRRAPMTLRVNQRQQDRASYLL 196 Query: 192 KLNAVMLPTGGIRLKEL----------PESIVSLPGFAEGVWWVQDASASIPVQ---LFG 238 +L + + P ++ +LPGFA+G VQD +A + G Sbjct: 197 RLEQAGIAAHAVTRPGAIDAQAIELATPCAVSALPGFADGAVSVQDLAAQVAAPLLLGAG 256 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS-KRRLEKLRCNLDRLHLYAED--IIE 295 VLD CAAPGGKTA L+ + RRL K+ L RL L A Sbjct: 257 LAPGARVLDACAAPGGKTAHLLELAELDLLALDADPRRLVKVSETLQRLGLRARTQAADA 316 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 D + + +DA+L+DAPCS++G +RRHPDV W R D+ A Q +LL + Sbjct: 317 RDVVAWWDGRPYDAILLDAPCSASGIVRRHPDVRWLRRASDLDALASTQAELLDALWPLL 376 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 +PGG ++++ CS+ K + + L+ +P + P +D +S Sbjct: 377 RPGGRLLYATCSVFKAEGAHQIDAFLQRAPDAI-AQPSPGYLLPVVDNPGQVSE------ 429 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + DGF+ L + Sbjct: 430 --------GPLRPSTDGFYYALLEK 446 >gi|258512029|ref|YP_003185463.1| Fmu (Sun) domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478755|gb|ACV59074.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 479 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 112/312 (35%), Gaps = 26/312 (8%) Query: 146 SIIPEWFKERLENFYGKE---RVLAISDACISPLYIDLTV------KFDIETWAHKLNAV 196 P + + A + L ++ Sbjct: 1 MRFPPDIPKAFVQQMEHWLGAEARDLVAALSDKPWRGLRYASVAKPHGELPKSLAPFLGD 60 Query: 197 MLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 +P + G +++QD SA +LDLCAAPGGK Sbjct: 61 GVPWAADGFYLAHGPSLGYTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGK 120 Query: 256 TAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-MDAFDYCPKKLFDA 309 T GA++ A D+ + R+ L N +R+ E A + FDA Sbjct: 121 TTHAALLAARRGGAQIVANDIHRDRVLALAENAERVGAPCAITNESPAALAEAWPQAFDA 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 ++VDAPCS G R+ P V D + Q+ +L ++ ++PGG +V+S C+L+ Sbjct: 181 MVVDAPCSGEGMFRKDPAVRAEWRPDAPERFQALQKDILHHALTMLRPGGRLVYSTCTLN 240 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGVS 427 ++E+VV +L P+ +E +P + + A + + R+ P + Sbjct: 241 PLENEQVVLWLLDHYPVELEPLPDWPEWRPARSDWAADREDIRLAKRLWPHVGRGE---- 296 Query: 428 SGMDGFFAVALR 439 G F R Sbjct: 297 ----GHFVARFR 304 >gi|103486517|ref|YP_616078.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256] gi|98976594|gb|ABF52745.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256] Length = 396 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 145/451 (32%), Gaps = 72/451 (15%) Query: 1 MKSGMNAR-LVSSHLLSCV----MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M AR + +L + +L + +D+ +RA+V Sbjct: 1 MTP--AARIQTAIEILDAIAAAAREGGAPADAILAEAMRARRYAG--SKDRRAIRALVYD 56 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +R + S P + +L ++ AQ A Sbjct: 57 VIR------------AVRSAPESGRA--AMLALADAQ---------------PGLAALFD 87 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 + + + + R ++ E + L + + A + Sbjct: 88 GSAYGPAPIAADEPRAQTGVAAEALIDLFDPLVGEEEHDSLLARAPLDLRVNRIKAGRA- 146 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 D+ET + + G RL + P +AEG + VQDA++ Sbjct: 147 ---------DLETLFPEGAPIPGAPDGWRLPPETAA-AQHPAYAEGAFEVQDAASQYASA 196 Query: 236 LFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 +++DLCA GGK A L + A + A D ++ RL++L +R Sbjct: 197 ALAAAPGQAIVDLCAGGGGKTLAIASLTGNAADILACDTNRARLQQLPRRAERAGATRIA 256 Query: 293 IIEMDA-----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 ++ + D V VDAPCS +GT RR P++ W + + Q KL Sbjct: 257 TRLLNPGQEVAMLADWQGRADRVFVDAPCSGSGTWRRSPELRWRLTPARLDRHLGDQAKL 316 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + G V PGG ++++ CS+ ++ V L P A L Sbjct: 317 IDLGADLVAPGGKLLYAVCSIIAREGRAQVADFLNRHPGWTADADYLPGGVGRAAGAGFL 376 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + G DGFF L Sbjct: 377 ---------------LTPAHDGCDGFFLARL 392 >gi|323339816|ref|ZP_08080085.1| NOL1/NOP2/sun family protein [Lactobacillus ruminis ATCC 25644] gi|323092689|gb|EFZ35292.1| NOL1/NOP2/sun family protein [Lactobacillus ruminis ATCC 25644] Length = 458 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 118/303 (38%), Gaps = 19/303 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F E+ G + + ++ + + + + + P + Sbjct: 1 MNLPDEFIEKYTKLLG-DEAESFFESFDTEPQKGFRLNPLKSNYQNVALNLEHPVDYSSV 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 + + G + QD SA ++ G +LDLCAAPGGK++ L + + Sbjct: 60 GYVGSVNGNSLEHQTGYVYSQDLSAMYVGEVCGPRPGEKILDLCAAPGGKSSHLASLMNN 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + +++++R L N++R+ + D ++ FD ++VDAPCS G Sbjct: 120 EGLLVSNEINRKRALILAENMERIGARNVIVTNEDPTGLLKTFEQFFDKIVVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ D + A Q+ +L + +K GG +V+S C+ ++ E+++ + Sbjct: 180 MFRKDHAATKYWHKDYPNECAARQKLILADAMKMLKQGGTLVYSTCTFAPEEDEQIITWL 239 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAV 436 L P +ELVP+ G +R+ + G F Sbjct: 240 LNEYPY-LELVPIKKYSGMDEGRPAFSDGNEELRGCVRLMMHHFKGE--------GHFIA 290 Query: 437 ALR 439 L+ Sbjct: 291 KLK 293 >gi|146325693|sp|Q8FGS9|RSMF_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + VE +PL + AL+ +G++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|160943941|ref|ZP_02091171.1| hypothetical protein FAEPRAM212_01442 [Faecalibacterium prausnitzii M21/2] gi|158444617|gb|EDP21621.1| hypothetical protein FAEPRAM212_01442 [Faecalibacterium prausnitzii M21/2] Length = 545 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 126/331 (38%), Gaps = 14/331 (4%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV---K 183 + + + L +P + E+ E +R + A +TV + Sbjct: 13 PSQSIVWPQPAALYIPWEEKNMPTEYFEQRERALLGQRYEQLYAAPQQTAERGVTVSALR 72 Query: 184 FDIETWAHK----LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 E +A + L + + P GV++ Q+ SAS L G Sbjct: 73 TTPEQFAQRADFPLEPSPFCKAAFVVHQPDFKPGRHPYHHAGVFYSQEPSASSAAPLLGV 132 Query: 240 LNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + VLDLCAAPGGK++QL + + + R E L+ NL+R+ + ++ Sbjct: 133 QPGMRVLDLCAAPGGKSSQLAAALQGRGVLVSNEYVAARAEILKSNLERMGVSNAVVLNE 192 Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 FD VLVDAPCS G R+ P L + + A ++L + Sbjct: 193 TPARIAEALPEFFDRVLVDAPCSGEGMFRKEPVALQQHCEALVKQCAELGAQILDCAAAA 252 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 + PGG +V+S C+ ++ E V L+ P L + + A + G + Sbjct: 253 LAPGGQLVYSTCTFAPEEDEGQVAAFLQRHP-EFVLADVLGNVDYTFGSAGEENRTGGLP 311 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + +I G +G F L + P+ Sbjct: 312 LDVSKVRRIWPCQGG-EGHFMARLVKAGTPR 341 >gi|297526389|ref|YP_003668413.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255305|gb|ADI31514.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 465 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 80/461 (17%), Positives = 158/461 (34%), Gaps = 44/461 (9%) Query: 8 RLVSSHLLSCVMRKRI--SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R + ++ V + + D+ V IV R+ +D Sbjct: 22 RRIVYAVIESVGLGFRVKPVQEAIRRVVSRYRISD-PIVDRR-VSGIVYSIYRYQGLLDK 79 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVA--QILYL------DVADYAVVDLAVEQAKRDKEN 117 ++ + + Y+++ L V+ Q+ ++ E+ Sbjct: 80 IVSDIAGFNPSSLPYNVRAALLVAAYVSQLDEKMSSSMKKTFKRYILRYLGEKIGDKAVR 139 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + + + PE ++ L + Sbjct: 140 EKIIGKTKLLFSNKWSPNSGEDRVLLKYRVSPELYRALARALRELGENLDDFLNSTMKIK 199 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGI--------RLKELPESIVS--LPGFAEGVWWVQD 227 + ++ + + +G R + SI + G+ QD Sbjct: 200 YRVFRVNSLKAKPEAVYKFLKDSGYRVELGKYSRRAIRVYGSIGKEIIRFIETGILVPQD 259 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLD 284 S+ + V++ + DLCAAPGGKT L +++ + ++ + R +LR L+ Sbjct: 260 ESSIVAVEILDPKPGSRIGDLCAAPGGKTTYLAEYTGLKSRIYSFEIYRDRARRLRLMLE 319 Query: 285 RLHL-YAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R + + DA + D VL+D PCSSTG + R+PDV W +D K Sbjct: 320 RTGTDKSVQVFVRDAREAPSILGNNSMDYVLLDPPCSSTGALARNPDVRWRYSVEDAEKL 379 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QR+LL ++ G ++++ CS+ + E +++ L L+ LN + +S Sbjct: 380 VVLQRELLDSAWKILRKDGKLLYTVCSVLPWEGEHIIKDFLEKH-WDAMLISLNKPFKQS 438 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + G +R P + G GF+ L++ Sbjct: 439 PILP------GTMRAWPHI--------HGTIGFYYALLKKK 465 >gi|326804037|ref|YP_004321855.1| NOL1/NOP2/sun family protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650301|gb|AEA00484.1| NOL1/NOP2/sun family protein [Aerococcus urinae ACS-120-V-Col10a] Length = 480 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 105/301 (34%), Gaps = 21/301 (6%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL----NAVMLPTGGIRLKE 207 F ++ G E + + + P Sbjct: 7 FIDKFNQLLGDEAADFFAALNKGESQKAFRINPLKAKAQAICQSYFEEELTPCPYSPWGY 66 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264 L + P G+ + Q+ASA + +LDLCAAPGGK+ Q + Sbjct: 67 LGQVDGHSPLHQAGLVYSQEASAMAVASVVQAQPGEKILDLCAAPGGKSTQIAADMQGQG 126 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++ +R + L N++R+ + + D FD VLVDAPCS G Sbjct: 127 LLVANEIIPKRAKILAENIERMGISNALVTNHDPESLATYFPGFFDKVLVDAPCSGEGMF 186 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 + + + Q+++L Q + +K GG +++S C+ +++EEV+ +L Sbjct: 187 TKSQAAREGWSKETPLLCQERQKEILGQAVRMLKAGGQLIYSTCTFSPEENEEVIAWLLD 246 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDMLEKIDGVSSGMDGFFAVAL 438 +E + S + + +RI P G F L Sbjct: 247 QGDFDLEWIDNFPPETVSRGRSDWSRSDYDLSPCVRIWPHRSIGE--------GHFIARL 298 Query: 439 R 439 + Sbjct: 299 K 299 >gi|253573323|ref|ZP_04850666.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846851|gb|EES74856.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 513 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 124/323 (38%), Gaps = 38/323 (11%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNAVMLPT 200 +P+ F ER+ G+E + SP + + V D + + Sbjct: 4 QLPKEFIERMRGLLGEEEFANFYASYDSPKFAGIRVNTLKIDPIDFKAVVPFDLRPIPWC 63 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 E P + G++++Q+ SA PV+L VLDLCAAPGGK+ Q+ Sbjct: 64 QTGYYVEEQAKPGKHPYYHAGLYYIQEPSAMAPVELLDVTPGERVLDLCAAPGGKSTQIA 123 Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAP 315 + D++ R + L N++ + + + FD +L+DAP Sbjct: 124 AKLCGRGMLVTNDINPERTKALAKNIELYGVRNAVVLGESPERIARAFPSFFDKILIDAP 183 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ D+ + + + K A Q+++L + + PGG +V+S C+ +++E Sbjct: 184 CSGEGMFRKDEDMARHWEPNWVRKYADMQQEILKSAAAMLAPGGRIVYSTCTFAPEENEA 243 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS------------------PEGWIRITP 417 + + L P +VPL Y + L+ G R+ P Sbjct: 244 TIAEFLLEHP-EFRVVPLGLDYGIAPGRPEWLTWLADRGEGKMYPPEIAEQTAGCGRLWP 302 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 +E G F L R Sbjct: 303 HQVEGE--------GHFLAVLER 317 >gi|205359812|ref|ZP_03224420.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342570|gb|EDZ29334.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085643|emb|CBY95421.1| Ribosomal RNA small subunit methyltransferase F rRNA (cytosine-C(5)-)-methyltransferase rsmF; 16S rRNA m5C1407 methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 513 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNREENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|324113570|gb|EGC07545.1| NOL1/NOP2/sun family protein [Escherichia fergusonii B253] Length = 479 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YNWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE + L + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLTLGDLFP---GADKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|83955440|ref|ZP_00964071.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. NAS-14.1] gi|83840084|gb|EAP79259.1| NOL1/NOP2/sun family protein [Sulfitobacter sp. NAS-14.1] Length = 386 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 87/452 (19%), Positives = 143/452 (31%), Gaps = 79/452 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L+ + + L S + +D+ VR V LR Sbjct: 1 MTPG--ARISAAIEILNTM-ADGVPAEQALTRWARGSRYAG--SKDRAAVRDHVFDVLRQ 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L L + + +LR ++ A Sbjct: 56 RR-----LAAHLGGGDTGRALMI-GVLRA-----------------QGIDLAPLFNG--- 89 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 L + +A + +P+W + G + A++ A S I Sbjct: 90 -QGHAPLPLSDAEATTPDAPSDMATLWNLPDWIIPLFQASLGAD-AEAVAQALQSRAPIS 147 Query: 180 LTVKF---DIETWAHKLNAVMLPTGGIRLK-------ELPESIVSLPGFAEGVWWVQDAS 229 + V + A L + T L E + + + G +QDA+ Sbjct: 148 VRVNTAQATVADVAEALAEAGIETRTNDLCATALTVTEGERKLRNSDSYLHGDVELQDAA 207 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + V +LD CA GGK A A V A D+ RR+ L DR Sbjct: 208 SQAVVAALPEAE--RMLDYCAGGGGKALAMAARRDATVFAHDIDPRRMVDLPARADRAGA 265 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ + FD VL DAPCS +G+ RR P+ WT + + Q K+L Sbjct: 266 T---VRQVTTDELDGAGPFDVVLCDAPCSGSGSWRRSPEGKWTFTAGRLEELTQIQDKIL 322 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + G + ++ CS+ + ++E+ L +P Sbjct: 323 DHAATLTAESGTLAYATCSVLQYENEDRAAAFLARNPD---------------------- 360 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + K V + DGFF RR Sbjct: 361 -------WTQVFAKRFHVDAQGDGFFTAHFRR 385 >gi|302525884|ref|ZP_07278226.1| fmu protein [Streptomyces sp. AA4] gi|302434779|gb|EFL06595.1| fmu protein [Streptomyces sp. AA4] Length = 371 Score = 140 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 133/384 (34%), Gaps = 40/384 (10%) Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141 + LR+ Q+L + ++A V V+ + + + N+ILR VS + Sbjct: 2 VLDALRLGAYQLLRTRIPEHASVGSTVDLVRAEAGS-WATGFANAILRAVSTKDEAQWLD 60 Query: 142 -------------IAGISIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKF-- 184 A + P W + A +A + + L + Sbjct: 61 ELSPDEATDPIGAYALRTAHPRWVARSFAEALGDKGAELKAALEADDARPAVHLVARPGE 120 Query: 185 -DIETWAHKLNA--VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + A G+ L E + VQD + + + Sbjct: 121 ISADELAAITGGDPAPYSPYGVHLPAGAGDPADAEPVRERLAAVQDEGSQLCAIAVTKVP 180 Query: 242 ----NLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + LDLCA PGGK A L A D ++ + R + + Sbjct: 181 LEGSDERWLDLCAGPGGKAALLGALAKISGAHVDAVEKAPHRARLIENATEGLPATVHVA 240 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D + + +D +LVDAPCS G +RR P+ W R D+ Q +LL+ + V+ Sbjct: 241 DGRESGLEPGYDRILVDAPCSGLGALRRRPEARWRRKPSDVADLTKLQGELLMAALDLVR 300 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGGIV + CS ++E VV + R + E+V + + ++++ Sbjct: 301 PGGIVTYVVCSPHLAETEGVVGETARRTKS--EIVDAREFFPDVPQLGDGP----YVQLW 354 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P G D F LR+ Sbjct: 355 PH--------RHGTDAMFCAVLRK 370 >gi|310641379|ref|YP_003946137.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus polymyxa SC2] gi|309246329|gb|ADO55896.1| tRNA (Cytosine-5-)-methyltransferase [Paenibacillus polymyxa SC2] Length = 555 Score = 140 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 30/313 (9%) Query: 147 IIPEWFKERLENFYGKE-RVLAISDACISPLYIDLT-----VKFDIETWAHKLNAVMLPT 200 +P F +R+E G E + I + V+ E +L + Sbjct: 4 QLPTAFVKRMEQLLGDEFEAFMAAYDHTPHAGIRVNTLKIPVEDFKERSPFELRPIPWCA 63 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 G + + P + G+++VQ+ SA PV+L +VLDLCAAPGGK+ Q+ Sbjct: 64 TGFYIPHGTKP-GLHPYYHAGLYYVQEPSAMSPVELLNVAQGEAVLDLCAAPGGKSTQIA 122 Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAP 315 + D+S R + L N++ + ++ D F+ +L+DAP Sbjct: 123 AKLQGSGILVTNDISVDRTKALAKNVELYGVRNAVVLNESPDRIADAFPHFFNKILIDAP 182 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ D+ +T + K QR +L S + GG +V+S C+ +++E Sbjct: 183 CSGEGMFRKDEDMAKQWETHSVEKCVVMQRDILRVAASMLSDGGRIVYSTCTFAPEENEG 242 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---------GWIRITPDMLEKIDGV 426 ++ + L + P +VP+ S + ++ E G R+ P ++E Sbjct: 243 MIAEFLDAHP-DFNVVPVPSEAGFAPGHPEWMNEEIASAHPELRGTARLWPHLVEGE--- 298 Query: 427 SSGMDGFFAVALR 439 G F L+ Sbjct: 299 -----GHFIAVLQ 306 >gi|82777228|ref|YP_403577.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shigella dysenteriae Sd197] gi|81241376|gb|ABB62086.1| putative nucleolar proteins [Shigella dysenteriae Sd197] Length = 481 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDIAAAPGSKTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GTNKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|213615624|ref|ZP_03371450.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 418 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|309788247|ref|ZP_07682851.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella dysenteriae 1617] gi|146325705|sp|Q32F19|RSMF_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|308923629|gb|EFP69132.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella dysenteriae 1617] Length = 479 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDIAAAPGSKTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP---GTNKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|254452165|ref|ZP_05065602.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 238] gi|198266571|gb|EDY90841.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 238] Length = 387 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 83/455 (18%), Positives = 150/455 (32%), Gaps = 81/455 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L + + + L F +D+ +R V LR Sbjct: 1 MTP--AARVAAAIEVLDLIF-EGATPEKSLTGWGRRHRFAG--SKDRAAIRDHVFQALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVS--VAQILYLDVADYAVVDLAVEQAKRDKEN 117 + + +R + V ++ + +A + E A+ ++ Sbjct: 56 RASYAWLGGAQSGRG------VMLGAMRAAGQVDEM-FSGIAHAPRLVEDGEDARAIEDA 108 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 A + IPEW + G + + + + Sbjct: 109 DR-----------------------ATQNDIPEWLLPHFDGALGAD-SDGVMETLKTRAG 144 Query: 178 IDLTVKFDIETWAHKLNAVMLP----------TGGIRLKELPESIVSLPGFAEGVWWVQD 227 + L V ++ + +++ + + + G+ +QD Sbjct: 145 VFLRVNAARTDTMETIDVLAHDGVTVVLVRDIKNALQVTDNERRVAQTDAYLTGLIELQD 204 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 AS+ + G VLDLCA GGK + GA V A D+ RR+ L DR Sbjct: 205 ASSQHAMISLGLTAGQRVLDLCAGGGGKALAMAALGADVVAHDIDPRRMVDLAPRADRAG 264 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + E ++ P FD VLVDAPCS +GT RR P W + +++ Q + Sbjct: 265 VVIETVLTDALATLAP---FDVVLVDAPCSGSGTWRRTPAAKWDLTPERLLELNQIQADV 321 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L+Q V GG + ++ CS+ ++ + + + + + Sbjct: 322 LVQAAPLVGVGGTLAYATCSVFDVENGDRIDEFTEKNGDFEVI----------------- 364 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + DGFF V LRR Sbjct: 365 ------------SKSLRRPRADGDGFFFVQLRRTT 387 >gi|260663067|ref|ZP_05863960.1| RNA methylase [Lactobacillus fermentum 28-3-CHN] gi|260552688|gb|EEX25688.1| RNA methylase [Lactobacillus fermentum 28-3-CHN] Length = 457 Score = 140 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G + Q+ SA + + + VLDLCAAPGGK+ + + A ++ K R + Sbjct: 77 GWVYSQEPSAMLVGEFADPQPDERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQ 136 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ P + + D Sbjct: 137 VLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNED 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A QR +L + +KPGG +V+S C+ ++ E++ +L + + + + Sbjct: 197 YPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAP 256 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +PE +R+ P + G F + Sbjct: 257 GMDAGRPEWADGNPELTKALRLFPHHFKGE--------GHFIAKFVK 295 >gi|62128049|gb|AAX65752.1| paral putative rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 513 Score = 140 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGTILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|225165744|ref|ZP_03727537.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] gi|224800014|gb|EEG18450.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] Length = 430 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 83/443 (18%), Positives = 147/443 (33%), Gaps = 31/443 (6%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ ++ + +L G+ R LS ++ + V R+L ++ Sbjct: 6 QRAALIIDQI-TPDHPADSVLRRALGE--LRHLSPAERRDISHAVFSYHRWLRWVEE--- 59 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 S PR L Q + ++ +A D Sbjct: 60 -----SGPRTAQVAAALEL----QRRFDADPASIKIEALAARAVPDWVLDAIDFPDAPPA 110 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + + P W + + E R L + ++ + Sbjct: 111 PANAGVSARAAWLRSLQTPAPLWLRVQREFADKLPRALGHCEPQPPVPSASPPSSANLAS 170 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 + L A P+ + F +G++ +QD ++ + + D Sbjct: 171 FYSALRAPTAFRYT-----GPKDLYRTDEFKQGLFEIQDLASQLVGHACNPQPGETWWDT 225 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-K 304 C GGKT L + + + A D RL LR R H Y + + + P K Sbjct: 226 CCGEGGKTLHLSDLMDNRGLIWATDRHTGRLATLRKRAARAHAYNYRAVTWNGGPFLPTK 285 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FD +L+DAPCS TGT +R+P WT DD+ + A Q +LL +KPGG ++++ Sbjct: 286 TKFDGILIDAPCSGTGTWQRNPHARWTTTQDDVSELAEIQLQLLNHASPALKPGGRLIYA 345 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPL-------NSAYWKSIDMAMALSPEGWIRITP 417 C+L + ++ + + E V L NS + T Sbjct: 346 VCTLTRAETTAIANAFTAARTADFEPVALPFFSNAENSGEPGGARSGKTDTAHATSSATA 405 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + +G F A RR Sbjct: 406 PSQLTLWPHEHNANGMFIAAWRR 428 >gi|46446031|ref|YP_007396.1| putative 16S rRNA m5C967 SAM-dependent methyltransferase [Candidatus Protochlamydia amoebophila UWE25] gi|46399672|emb|CAF23121.1| putative 16S rRNA m5C967 SAM-dependent methyltransferase [Candidatus Protochlamydia amoebophila UWE25] Length = 377 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 79/441 (17%), Positives = 151/441 (34%), Gaps = 89/441 (20%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LL R+ + L + + + + L +D+ + + +R+ ++ + Sbjct: 13 FSLLEAYDRQTLPLDLFISHYFREHS--SLGSKDRGFLAETIYALIRWKGLLEYLAPSSS 70 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 Q Y +V + +K Sbjct: 71 -------------------WQEKY-------IVYQTTDLSKMQARED------------- 91 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIET 188 + P E E YG E+ + + + + V ++ Sbjct: 92 --------IPLHARVSFPSHLFELFEECYGVEKAVNLCLINNTTAPTTIRVNRIKTTRDS 143 Query: 189 WAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + + + + SLP F EG++ VQD + + QL Sbjct: 144 LFKRWEGQYKISHTRYSSEGIIFHKKINFFSLPEFKEGLFEVQDEGSQLLAQLVRPKPGD 203 Query: 244 SVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD CA GGK A + ++ D+ L++ + L R + I+ ++ Sbjct: 204 QVLDYCAGSGGKTLAFAPHMEHRGQIYLHDIRPFALQEAKKRLKRAGIQNSQILLPNSPQ 263 Query: 301 YCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 KK + +LVDAPC+ TGT+RR+PD+ W D + + QR + + +SF+ P G Sbjct: 264 LSKLKKKMNWILVDAPCTGTGTLRRNPDMKWKFDETVLPRLIGQQRTIFEKALSFLHPEG 323 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+ CS+ +++ ++ +++ + VE Sbjct: 324 HIVYGTCSMLNAENQNQLEHFIKTYSLEVE----------------------------GE 355 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + + MDGFF V L+R Sbjct: 356 IFQTIPAQGEMDGFFGVVLKR 376 >gi|292659865|pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 58 PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + A +V +R+ L N++R A A F VL+D Sbjct: 118 HLAARXGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLD 177 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + + A Q+ LL Q + PGG++V+S C+ +++ Sbjct: 178 APCSGEGXFRKDREAARHWGPSAPKRXAEVQKALLAQASRLLGPGGVLVYSTCTFAPEEN 237 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E VV L++ P +E L+ + + +PE R+ P LE Sbjct: 238 EGVVAHFLKAHPEFRLEDARLHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 290 Query: 431 DGFFAVALRR 440 G F R+ Sbjct: 291 -GHFLARFRK 299 >gi|229829979|ref|ZP_04456048.1| hypothetical protein GCWU000342_02085 [Shuttleworthia satelles DSM 14600] gi|229791277|gb|EEP27391.1| hypothetical protein GCWU000342_02085 [Shuttleworthia satelles DSM 14600] Length = 543 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 113/324 (34%), Gaps = 21/324 (6%) Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + + R G+ + P + P +VK Sbjct: 31 MGSDFDAFMKSYQRQDRYHGLRLNPLAISAFWPVQGETPPTDISHLSDSQPARHPSSVKA 90 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + + L+ + + P G++++Q+ SA P Sbjct: 91 LLASVISDLSDPIPWAKDAYYYGEEDRPGKHPYHEAGLYYIQEPSAMAPAVYLDARPGEY 150 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDLCAAPGGK++Q + + + ++ R L N++RL + + D Sbjct: 151 VLDLCAAPGGKSSQIAACMQGQGLLISNEIVPNRAAVLSENMERLGVVNAIVTNEDPDGL 210 Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD ++VDAPCS G R++ L +++ A +L +K GG Sbjct: 211 ADHFPLFFDKIMVDAPCSGEGMFRKNAIALLEWSPENVQVCADRDDLILDAADRMLKEGG 270 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 +VFS C+ + E +++ L P +E VPL + EG IR+ P Sbjct: 271 RLVFSTCTFAPAEDEGSIERFLDRHPNYQIERVPLYPGMTPA-------DLEGTIRLWPH 323 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 L G + L + Sbjct: 324 KLRGE--------GHYIAVLCKKT 339 >gi|226313940|ref|YP_002773836.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis NBRC 100599] gi|226096890|dbj|BAH45332.1| probable ribosomal RNA small subunit methyltransferase [Brevibacillus brevis NBRC 100599] Length = 470 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 19/256 (7%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + P P + G++++Q+ SA + G +LDLCAAPGG Sbjct: 57 EAVPWCENGFRYKEPARPGKHPFHSAGMYYLQEPSAMSAAEALGAQPGERILDLCAAPGG 116 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 K+ Q + + A ++ R + L NL+R + + + FD Sbjct: 117 KSTQLAAFLHGQGMLVANEIHPVRAKALSENLERCGVTNAVVTNETPERLQERFPQFFDR 176 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +LVDAPCS G R+ P+ + + + Q +L + +KPGG +V+S C+ Sbjct: 177 ILVDAPCSGEGMFRKLPEAIEDWSPAKVTECHVMQGDILEAAAAMLKPGGTLVYSTCTFA 236 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-----WIRITPDMLEKID 424 ++E+ + L P E+VPL A S SP+ R+ P L+ Sbjct: 237 PLENEQSLVNFLGRHP-EFEIVPLPHADCFSAGQPEWASPQNEQLTQTARLWPHRLQGE- 294 Query: 425 GVSSGMDGFFAVALRR 440 G + L++ Sbjct: 295 -------GHYLAKLQK 303 >gi|15802248|ref|NP_288272.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 EDL933] gi|15831799|ref|NP_310572.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. Sakai] gi|195939736|ref|ZP_03085118.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. EC4024] gi|12515885|gb|AAG56825.1|AE005406_4 putative nucleolar proteins [Escherichia coli O157:H7 str. EDL933] gi|13362013|dbj|BAB35968.1| putative rRNA methylase [Escherichia coli O157:H7 str. Sakai] gi|209767728|gb|ACI82176.1| putative rRNA methylase [Escherichia coli] gi|209767730|gb|ACI82177.1| putative rRNA methylase [Escherichia coli] gi|209767732|gb|ACI82178.1| putative rRNA methylase [Escherichia coli] gi|209767736|gb|ACI82180.1| putative rRNA methylase [Escherichia coli] Length = 481 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|227515722|ref|ZP_03945771.1| tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] gi|227085922|gb|EEI21234.1| tRNA/rRNA methyltransferase [Lactobacillus fermentum ATCC 14931] Length = 469 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G + Q+ SA + + VLDLCAAPGGK+ + + A ++ K R + Sbjct: 89 GWVYSQEPSAMLVGEFADPQPGERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQ 148 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ P + + D Sbjct: 149 VLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNED 208 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A QR +L + +KPGG +V+S C+ ++ E++ +L + + + + Sbjct: 209 YPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAP 268 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +PE +R+ P + G F + Sbjct: 269 GMDAGRPEWADGNPELTKALRLFPHHFKGE--------GHFIAKFVK 307 >gi|145299018|ref|YP_001141859.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas salmonicida subsp. salmonicida A449] gi|167012765|sp|A4SMI9|RSMF_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|142851790|gb|ABO90111.1| Sun/nucleolar protein family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 476 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 22/263 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIP----VQLFGTLNN 242 + +AV G L ES+ + G++++Q+AS+ +P + Sbjct: 59 LGWQFDAVPWCETGFWLTRADESVPLGNTAEHLSGLFYIQEASSMLPVTALFASDQVKRD 118 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 +LD AAPG KT Q+ + + + A + S RL+ L N+ R + + D Sbjct: 119 GMLLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAK 178 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 F + FDA+L+DAPCS GT+R+ D L + I + A Q+ LL +KP Sbjct: 179 VFGQWLPETFDAILLDAPCSGEGTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKP 238 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +Q+++ V Q +L + L L + + A +PEG++ + P Sbjct: 239 GGVLVYSTCTLSQQENQAVCQSLLEKFGDALTLDSLADLFP---NAEQACTPEGYLHVWP 295 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 296 QIFDSE--------GFFVARLRK 310 >gi|187776449|ref|ZP_02802778.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4196] gi|189010611|ref|ZP_02808140.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4076] gi|189402623|ref|ZP_02783593.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4401] gi|189404116|ref|ZP_02787380.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4501] gi|189405107|ref|ZP_02813260.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC869] gi|208816841|ref|ZP_03257961.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4045] gi|208821320|ref|ZP_03261640.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4042] gi|209399709|ref|YP_002270917.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4115] gi|254793459|ref|YP_003078296.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. TW14359] gi|261227667|ref|ZP_05941948.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. FRIK2000] gi|261258167|ref|ZP_05950700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. FRIK966] gi|146325690|sp|Q8XCL9|RSMF_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|226725334|sp|B5YQX9|RSMF_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|187767061|gb|EDU30905.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4196] gi|188999444|gb|EDU68430.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4076] gi|189354637|gb|EDU73056.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4401] gi|189367398|gb|EDU85814.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4501] gi|189372082|gb|EDU90498.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC869] gi|208731184|gb|EDZ79873.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4045] gi|208741443|gb|EDZ89125.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4042] gi|209161109|gb|ACI38542.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4115] gi|254592859|gb|ACT72220.1| predicted methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|320188535|gb|EFW63197.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC1212] gi|320641687|gb|EFX11075.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. G5101] gi|320647046|gb|EFX15879.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H- str. 493-89] gi|320652329|gb|EFX20627.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H- str. H 2687] gi|320657930|gb|EFX25692.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658503|gb|EFX26197.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O55:H7 str. USDA 5905] gi|320668402|gb|EFX35229.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli O157:H7 str. LSU-61] Length = 479 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|156098789|ref|XP_001615410.1| proliferating-cell nucleolar antigen p120 [Plasmodium vivax SaI-1] gi|148804284|gb|EDL45683.1| proliferating-cell nucleolar antigen p120, putative [Plasmodium vivax] Length = 615 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 121/315 (38%), Gaps = 22/315 (6%) Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKL--- 193 E + L + + + + P I L VK + L Sbjct: 195 FYYTYFYEYSEQLIKYLYYLFDLKELYMFLEMNNLPKEIHLRTNTVKITRNNLLNILKSQ 254 Query: 194 -----NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 GI + + ++ SL + G + +Q AS+ IPV ++LD+ Sbjct: 255 NINAEEGANWNNVGIVINDANSNVGSLNEYLYGYYMLQSASSLIPVLELNVNPEDTILDM 314 Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCP 303 CAAPGGK + + V A DV+K R + + N RL + I D Sbjct: 315 CAAPGGKCTFICALQKNRGHVYANDVNKMRCKAIEANASRLGIQNLIITSFDALKIGKKW 374 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FD +++DAPCS TG + ++ + +I + A QRKLL IS VK GGIVV+ Sbjct: 375 TFQFDKIILDAPCSGTGVVNKNKGAR-RKTLKEIRELAQKQRKLLSNAISLVKNGGIVVY 433 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS+ +++E+V+ +L+ + V + + +I Sbjct: 434 STCSITVEENEQVINYILKKRDVNVLPTDIQIGDPGITHYRKKEFSSKV-----ALCRRI 488 Query: 424 DGVSSGMDGFFAVAL 438 D FF L Sbjct: 489 YLHKHNQDNFFVAKL 503 >gi|162139578|ref|YP_216833.2| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583660|ref|YP_002637458.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|146325698|sp|Q57NF9|RSMF_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|254766867|sp|C0Q2Y5|RSMF_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|224468187|gb|ACN46017.1| hypothetical protein SPC_1879 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714889|gb|EFZ06460.1| paral putative rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 479 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGTILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|218291354|ref|ZP_03495308.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218238758|gb|EED05973.1| Fmu (Sun) domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 479 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 111/312 (35%), Gaps = 26/312 (8%) Query: 146 SIIPEWFKERLENFYGKE---RVLAISDACISPLYIDLTV------KFDIETWAHKLNAV 196 P + + A + L ++ Sbjct: 1 MRFPPDIPKAFVQQMEHWLGAEARDLVAALSDKPWRGLRYASVAKPHGELPKSLAPFLGD 60 Query: 197 MLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 +P + G +++QD SA +LDLCAAPGGK Sbjct: 61 GVPWAADGFYLAHGPSLGYTVLHQAGAFYLQDPSAMAVAVALDPQPGERILDLCAAPGGK 120 Query: 256 TAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-MDAFDYCPKKLFDA 309 T GA++ A D+ + R+ L N +R+ E A + FDA Sbjct: 121 TTHAALLAARRGGAQIVANDIHRDRVLALAENAERVGAPCAITNESPAALAEAWPQAFDA 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 ++VD PCS G R+ P V D + Q+ +L ++ ++PGG +V+S C+L+ Sbjct: 181 MVVDTPCSGEGMFRKDPAVRAEWRPDAPERFQALQKDILHHALTMLRPGGRLVYSTCTLN 240 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGVS 427 ++E+VV +L P+ +E +P + + A + + R+ P + Sbjct: 241 PLENEQVVLWLLDHYPVELEPLPDWPEWRPARSDWAADREDIRLAKRLWPHVGRGE---- 296 Query: 428 SGMDGFFAVALR 439 G F R Sbjct: 297 ----GHFVARFR 304 >gi|213161347|ref|ZP_03347057.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424193|ref|ZP_03357058.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 513 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|70945403|ref|XP_742525.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56521557|emb|CAH82175.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 511 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 11/260 (4%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + I L + ++ SL + G + +Q +S+ IPV N V Sbjct: 254 KNKNIAIQDGSTWNNVDITLTDTSSNVGSLNEYLYGYYIIQSSSSLIPVLELNIKENELV 313 Query: 246 LDLCAAPGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300 LD+CAAPGGK + A D++K R + + + R+ + I D + Sbjct: 314 LDMCAAPGGKCTYICTIKKNKGIVYANDINKMRCKAIEAHAARMGINNLIITSFDSLKIN 373 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 K FD +L+DAPCS TG + ++ + +I A QRKLL I VK GGI Sbjct: 374 KYFKFKFDKILLDAPCSGTGVVNKNKTAR-RKTIKEIRDLAQKQRKLLNNAIDIVKNGGI 432 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 V++S CS+ +++E+V+ +L+ + + +N I + Sbjct: 433 VIYSTCSITVEENEQVINYILKKRDVNLLPTDINIGDPGIIHYRKKQFSSKI-----ALC 487 Query: 421 EKIDGVSSGMDGFFAVALRR 440 ++I D FF L + Sbjct: 488 KRIYLHKHNHDNFFVAKLVK 507 >gi|184155675|ref|YP_001844015.1| RNA methylase [Lactobacillus fermentum IFO 3956] gi|183227019|dbj|BAG27535.1| RNA methylase [Lactobacillus fermentum IFO 3956] Length = 457 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G + Q+ SA + + VLDLCAAPGGK+ + + A ++ K R + Sbjct: 77 GWVYSQEPSAMLVGEFADPQPGERVLDLCAAPGGKSTHLIAKMNDEGLLVANEIFKNRAQ 136 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ P + + D Sbjct: 137 VLAENLERWGAKHVVVANESPDQLEKQFPAFFDRILVDAPCSGEGMFRKEPAGIEYWNED 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A QR +L + +KPGG +V+S C+ ++ E++ +L + + + + Sbjct: 197 YPAECANRQRHILTSALKMLKPGGTLVYSTCTFAPEEDEQMAAWLLNNYDLTMVELEKAP 256 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +PE +R+ P + G F + Sbjct: 257 GMDAGRPEWADGNPELTKALRLFPHHFKGE--------GHFIAKFVK 295 >gi|326627545|gb|EGE33888.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 513 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|213419894|ref|ZP_03352960.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 371 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|46199323|ref|YP_004990.1| putative rRNA methyl transferase [Thermus thermophilus HB27] gi|46196948|gb|AAS81363.1| putative rRNA methyl transferase [Thermus thermophilus HB27] Length = 447 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 49 PWCQEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 108 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V +R+ L N++R A A F VL+D Sbjct: 109 HLAAHMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGAYFHRVLLD 168 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + + + A Q+ LL Q V PGG++V+S C+ +++ Sbjct: 169 APCSGEGMFRKDREAVRHWGPSAPKRMAEVQKALLAQAARLVGPGGVLVYSTCTFAPEEN 228 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E VV L++ P +E + + + +PE R+ P LE Sbjct: 229 EGVVVHFLKAHPEFRLEDARFHPLFAPGVPEWGEGNPELLKTARLWPHRLEGE------- 281 Query: 431 DGFFAVALRR 440 G F R+ Sbjct: 282 -GHFLARFRK 290 >gi|195873256|ref|ZP_02696581.2| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634470|gb|EDX52822.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 513 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|295091132|emb|CBK77239.1| tRNA and rRNA cytosine-C5-methylases [Clostridium cf. saccharolyticum K10] Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 103/267 (38%), Gaps = 20/267 (7%) Query: 184 FDIETWAHKLNAVM---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 D E + + + + P GV+++Q+ SA V L Sbjct: 31 TDRERFREETEFSLKPIPWAEEGYYYGAKDRPGRHPYHEAGVYYIQEPSAMAVVSLLDPK 90 Query: 241 NNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLDLCAAPGGKT+ + + + ++ R L N +R+ + + D Sbjct: 91 PGDRVLDLCAAPGGKTSHIASRLQGKGFLLSNEIHPARARILSQNAERMGIANGAVFNED 150 Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + FD ++VDAPCS G R+ +D + A Q ++L + + Sbjct: 151 SARLSAAFPEYFDKIVVDAPCSGEGMFRKDEGARAEWSSDKVRLCAQRQAEILENASAML 210 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEG 411 KPGG + +S C+ ++ E+ V+ L++ P V+ P S + Sbjct: 211 KPGGTMAYSTCTFSPEEDEQAVEAFLKAHPEFKIKKVKKYPGMSDGVPGWTLEGREELSC 270 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVAL 438 +RI P +G +G F L Sbjct: 271 AVRIWPH--------RTGGEGHFIAIL 289 >gi|194444109|ref|YP_002041104.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200391079|ref|ZP_03217690.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194402772|gb|ACF62994.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199603524|gb|EDZ02070.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 513 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|320451132|ref|YP_004203228.1| tRNA and rRNA cytosine-C5-methylase [Thermus scotoductus SA-01] gi|320151301|gb|ADW22679.1| tRNA and rRNA cytosine-C5-methylase [Thermus scotoductus SA-01] Length = 455 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 99/250 (39%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 58 PWCPEGFYYPKEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPQPGERVLDLAAAPGGKTT 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V +R+ L N++R A + F VL+D Sbjct: 118 HLLARMGGRGLLLANEVDGKRIRGLLENVERWGGRLAVVQAPPRSLAEAFGPYFHRVLLD 177 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ P+ + +++ Q+ LL Q + PGG++V+S C+ +++ Sbjct: 178 APCSGEGMFRKDPEAIRHWGPGAPRRASEVQKGLLSQAARLLGPGGVLVYSTCTFAPEEN 237 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGM 430 E VV LR P +E + + + +P E R+ P LE Sbjct: 238 EGVVAHFLREHPEFHLEDARYHPLFAPGVPEWGDGNPELEKTARLWPHRLEGE------- 290 Query: 431 DGFFAVALRR 440 G F LR+ Sbjct: 291 -GHFLARLRK 299 >gi|229552298|ref|ZP_04441023.1| tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|258539707|ref|YP_003174206.1| tRNA and rRNA cytosine-C5-methylases [Lactobacillus rhamnosus Lc 705] gi|229314280|gb|EEN80253.1| tRNA/rRNA methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|257151383|emb|CAR90355.1| tRNA and rRNA cytosine-C5-methylases [Lactobacillus rhamnosus Lc 705] Length = 443 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 15/226 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277 G+ + Q+ SA + VLDLCAAPGGK+ QL + + +++ R + Sbjct: 73 GLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGLLVSNEINGPRSK 132 Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ PD + D Sbjct: 133 VLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFRKDPDAIQYWHRD 192 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A Q+ +L I ++PGG +++S C+ ++ E+++ +L + +E + + Sbjct: 193 YPAECAARQKVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAHYDLTLEPIKKSP 252 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +PE +R+ P ++ G F LR Sbjct: 253 GMVAGRPEWADGNPELAKTVRLFPHLVRGE--------GHFVAKLR 290 >gi|56413232|ref|YP_150307.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362157|ref|YP_002141794.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81821455|sp|Q5PHN5|RSMF_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|226725345|sp|B5BHA6|RSMF_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|56127489|gb|AAV76995.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093634|emb|CAR59104.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E+V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEDVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|161613635|ref|YP_001587600.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362999|gb|ABX66767.1| hypothetical protein SPAB_01359 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 513 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|322649242|gb|EFY45680.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 436 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDNAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|16760738|ref|NP_456355.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141504|ref|NP_804846.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|81853268|sp|Q8Z662|RSMF_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|25511826|pir||AB0729 conserved hypothetical protein STY1981 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503035|emb|CAD05532.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137131|gb|AAO68695.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|225389039|ref|ZP_03758763.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme DSM 15981] gi|225044897|gb|EEG55143.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme DSM 15981] Length = 532 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 67/258 (25%), Positives = 110/258 (42%), Gaps = 16/258 (6%) Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 +L V G P + G++++Q+ SA PV+L VLDL Sbjct: 54 LPWRLEPVPWVKTGFYYDGDQARPSRHPAYYAGLYYLQEPSAMTPVELLPVEPGDRVLDL 113 Query: 249 CAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 CAAPGGK+ QL + + D+S R L NL+ + + Sbjct: 114 CAAPGGKSTQLGARLLGEGLLVSNDISNSRARALLKNLELAGIPNICVTSESPERLSQVF 173 Query: 306 L--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FD +LVDAPCS G RR +++ A QR++L ++ ++PGG +++ Sbjct: 174 PLYFDKILVDAPCSGEGMFRRDGEMVKDWALKGPAYYAPLQREILAAAVTMLRPGGTILY 233 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+ +++ E V+ L P +EL PL++ + L +G +R+ P ++ Sbjct: 234 STCTFSREEDEGTVEYALNRFP-DLELKPLDTGLVPGACGGIGL--DGCMRLFPHRIKGE 290 Query: 424 DGVSSGMDGFFAVALRRL 441 G F LR+ Sbjct: 291 --------GHFLALLRKK 300 >gi|237807375|ref|YP_002891815.1| Fmu (Sun) domain-containing protein [Tolumonas auensis DSM 9187] gi|237499636|gb|ACQ92229.1| Fmu (Sun) domain protein [Tolumonas auensis DSM 9187] Length = 403 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 89/442 (20%), Positives = 157/442 (35%), Gaps = 71/442 (16%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI--VNVTLRFLPRIDAVLDFVL 71 +LS V+ ++ + E+ + + I V LR L +L F+ Sbjct: 17 ILSAVLNEKSPVDRATAQEFKMEPMP-----EAAQIHVIGAVGDILRHLN----LLAFLA 67 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + ++Q L + R N A L + + Sbjct: 68 DVPMAQAGIAVQSL------------------ICQWHLLRNRQLPNLRAADLCDVKMFEA 109 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKER-VLAISDACISPLYIDLTVKFDIET-W 189 RE Q+ A PEW ++ + G++ + + YI + ET Sbjct: 110 RRE--LAQQQPALWDGCPEWLEQLGQEQLGEQWPAEREALTHAAKRYIRVNTLKCNETQL 167 Query: 190 AHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 H+L + T + S+ P F +G + QDA + G + Sbjct: 168 QHRLQQEHIETRAVPDVPGALEVTSNGSLFRTPAFKDGWFEQQDAGSQHIAPFLGVEPGM 227 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDA 298 V+D CA GGKT L + ++ A+DV + +++ LR R + +IE Sbjct: 228 RVIDACAGTGGKTLHLAALMAGKGRLLAMDVEQWKVDNLRLRARRAGAHNIEPRLIESSK 287 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 K+ D VL+D PCS G ++R+PD W + + Q +L + VK G Sbjct: 288 TIKRLKESADRVLLDVPCSGLGVLKRNPDTKWRDTAERLPVLLELQADILRRYSKMVKVG 347 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V++ CSL ++++ V + + L+ Sbjct: 348 GQLVYATCSLLPAENQDQVARFINECDGQFTLL--------------------------- 380 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + I +G DGF+ L+R Sbjct: 381 REQTISPAETGFDGFYMALLQR 402 >gi|167553462|ref|ZP_02347211.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322100|gb|EDZ09939.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|227510336|ref|ZP_03940385.1| tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189988|gb|EEI70055.1| tRNA/rRNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 467 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 18/303 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ FK + G++ L + + + +N + Sbjct: 1 MQLPDDFKNKYTKLLGQQEALQFLASFSKTANHGFRLNPLKQN--QPVNIDLSHPTAHCQ 58 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + G + Q+ SA ++ VLDLCAAPGGKT + Sbjct: 59 LGYYGDVSGKTVAHQSGAVYSQEPSAMYVGEVAAPKAGERVLDLCAAPGGKTTHVGSYMA 118 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319 + + A ++ +R + L N++R L + + FD +LVDAPCS Sbjct: 119 NSGLLIANEIDHKRSKVLMENVERFGLTNTIVTNSTPEIIAKQLPNFFDRILVDAPCSGE 178 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + + A QR++L + + +K GG +++S C+ ++ E+++ Sbjct: 179 GMFRKDPDAVSYWSLGYPEECATRQRQILSETVKNLKHGGELIYSTCTFAPEEDEQIIAW 238 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 +++ + V +P+ +RI P+ +G F Sbjct: 239 LVKQYHFDILPVKKFPGMDNGRPDWADGNPDLVNCVRIFPNHF--------NGEGHFIAK 290 Query: 438 LRR 440 L++ Sbjct: 291 LKK 293 >gi|194449925|ref|YP_002045895.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408229|gb|ACF68448.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 513 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|168234498|ref|ZP_02659556.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205331591|gb|EDZ18355.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTL 240 IE + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 57 IEPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDN 116 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + L V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 117 HPLRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFD 176 Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + FDA+L+DAPCS G +R+ PD L + + A QR+LL + Sbjct: 177 GRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHAL 236 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 +PGG +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + Sbjct: 237 RPGGTLVYSTCTLNRQENEEVCLWLQETYADAVEFLPLGDLFP---DADRALTPEGFLHV 293 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P + + GFF LR++ Sbjct: 294 FPQIYDCE--------GFFVARLRKM 311 >gi|327401876|ref|YP_004342715.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6] gi|327317384|gb|AEA48000.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6] Length = 308 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 16/252 (6%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 G + SI + G+ + Q+AS+ IP + + VLD+ AAPG KT Sbjct: 63 WCREGFFIDIDEDSSIGTSIEHQLGLIFSQEASSMIPPVVLDVKPGMLVLDMAAAPGAKT 122 Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 Q + + + A DV RL L NL R + + MD + + FDAVL+ Sbjct: 123 TQIAQYMQNEGCIIANDVKVGRLNILISNLQRCGVLIARVTMMDGRSFRKYENTFDAVLL 182 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS+ G IR++ L D+ + Q++L++ + +KPGG++V+S C+LD + Sbjct: 183 DAPCSNAGMIRKNYKYLKIWRLKDVESLSRLQKQLIMAAYAALKPGGVLVYSTCTLDPAE 242 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVSS 428 +E+VV +L ++ +E + L K + + +RI P + Sbjct: 243 NEDVVDHLLANTDARLEEIDLPVKRHKPFTSFDGKEFSSEVKKCLRIHPQD--------N 294 Query: 429 GMDGFFAVALRR 440 +GFF + + Sbjct: 295 DTEGFFVAKIVK 306 >gi|168259905|ref|ZP_02681878.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205351006|gb|EDZ37637.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPKSNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEEVCLWLQETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|194469686|ref|ZP_03075670.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456050|gb|EDX44889.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 513 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 128/266 (48%), Gaps = 21/266 (7%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTL 240 IE + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 91 IEPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDN 150 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + L V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 151 HPLRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFD 210 Query: 298 AFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + FDA+L+DAPCS G +R+ PD L + + A QR+LL + Sbjct: 211 GRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHAL 270 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 +PGG +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + Sbjct: 271 RPGGTLVYSTCTLNRQENEEVCLWLQETYADAVEFLPLGDLFP---DADRALTPEGFLHV 327 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P + + GFF LR++ Sbjct: 328 FPQIYDCE--------GFFVARLRKM 345 >gi|308049577|ref|YP_003913143.1| 16S rRNA m(5)C-1407 methyltransferase [Ferrimonas balearica DSM 9799] gi|307631767|gb|ADN76069.1| 16S rRNA m(5)C-1407 methyltransferase [Ferrimonas balearica DSM 9799] Length = 470 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 20/259 (7%) Query: 193 LNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDL 248 L V G L+ ES + + G++++Q+AS+ +P + VLD+ Sbjct: 60 LTPVPWCEEGFWLERDDESQTLGNTAEHLAGLFYIQEASSMMPPTALFTHSHAPQRVLDV 119 Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 +APG KT Q+ + + A + S RL+ L NL RL + + D + P Sbjct: 120 ASAPGSKTTQIAARLDNQGLLLANEYSSSRLKGLHANLSRLGIRNVVMTHFDGRVFGPAL 179 Query: 306 L--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FDA+L+DAPCS GTIR+ PD D + + + A QR L+ + +KPGG++V+ Sbjct: 180 PEQFDAILLDAPCSGEGTIRKDPDAFANWDPESVEEIAELQRGLIESAFAALKPGGLLVY 239 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+L+ +++++V Q +L P VE+ L + A + EG++ + P + + Sbjct: 240 STCTLNHRENQDVCQHLLDQYPDAVEVENLADLFP---GADRATTDEGYLHVWPQIYDSE 296 Query: 424 DGVSSGMDGFFAVALRRLI 442 GFF ALR+ Sbjct: 297 --------GFFVAALRKTA 307 >gi|256751534|ref|ZP_05492411.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus CCSD1] gi|256749618|gb|EEU62645.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus CCSD1] Length = 460 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 16/256 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPRPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ K+R++ L N++R+ + I + + FD +LV Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + Q+ +L +S +KPGGI+V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQKNILRNVVSLLKPGGILVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429 +E V++ L P S ++ PE +R+ P + Sbjct: 240 NEGVIKNFLEEYPEFEVEESEMSKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRRLIQPK 445 G F LR+ + + Sbjct: 294 --GHFIAKLRKKEEEE 307 >gi|257096812|sp|B4SV89|RSMF_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|197264965|ref|ZP_03165039.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243220|gb|EDY25840.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 513 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|319943233|ref|ZP_08017516.1| rRNA small subunit methyltransferase B [Lautropia mirabilis ATCC 51599] gi|319743775|gb|EFV96179.1| rRNA small subunit methyltransferase B [Lautropia mirabilis ATCC 51599] Length = 476 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 80/444 (18%), Positives = 143/444 (32%), Gaps = 58/444 (13%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 L L RD+ + V LR ++ L+ + + ++ Sbjct: 56 APADQQLGAWLRRHP--SLGARDRRWLSDRVYDVLRHGRAYESFLEEGGRADADGQASAV 113 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 + + + A+ N+ + + Q Sbjct: 114 R------------ERLPGLMRLSEALR--------------TNAGPEAAAYRQWLEQQPP 147 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPT 200 A +P+W E L +G++ + + +K KL + Sbjct: 148 AVRFSLPDWLWEGLAATHGEQAEALAATLLLPAAIEIRSNLLKGKATALQKKLAEAGVAA 207 Query: 201 GGIRLKELPESIV------SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + LP F G + +QDA + + V+D CA GG Sbjct: 208 ETVPEAPAALRVTGRPALIRLPLFENGWFELQDAGSQAIAECGAARRGERVIDFCAGAGG 267 Query: 255 KT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM----DAFDYCPKKLF 307 KT A + + +V A D + RL +L L R + + + DA + Sbjct: 268 KTLALAARMRNQGQVLAFDTDEARLSRLGPRLKRAGVDIVTQMRLKDSLDARLARYQGWA 327 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VLVDAPCS +GT+RRHPD+ W ++ QR+++ ++PGG +V++ CS Sbjct: 328 DLVLVDAPCSGSGTLRRHPDLKWRLQPQEVAHYRQLQRQIMAAAARLLRPGGRLVYATCS 387 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS---------------PEGW 412 L ++E + + + + A + A Sbjct: 388 LLADENEAQMAWLAHKAGGVSAVGGAAGAAGAAERAADPTGSGGAVGAGGVQATDPAWPA 447 Query: 413 IRITPDMLEKIDGVSSGMDGFFAV 436 + + P G D FF Sbjct: 448 VSLQPVAQRYWLPQPEGGDVFFMA 471 >gi|291529390|emb|CBK94976.1| tRNA and rRNA cytosine-C5-methylases [Eubacterium rectale M104/1] Length = 462 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 117/296 (39%), Gaps = 36/296 (12%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 EW + + L + + + + ++T + + + Sbjct: 18 EWDDFLYSYDNNRFQALRFNTLKVQSPEERMRI---LKTLKISSDKKVSWANEAYYFDEN 74 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKV 266 P G++++Q+ SA L + VLDLCAAPGGK+ QL + Sbjct: 75 VRPGKHPYHEMGLYYIQEPSAMSAAALLAPKPGMRVLDLCAAPGGKSTQLATYLGDSGLL 134 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324 + +++ +R L N++R+ + + D+F F+A+ VDAPCS G R+ Sbjct: 135 VSNEINTQRSRILSQNIERMGIKNAIVTNEDSFVLASHFPGFFNAIQVDAPCSGEGMFRK 194 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P+ + +++ A Q+++L +KPGG++V+S C+ K+++E+V++ L Sbjct: 195 LPEAIEQWSMENVAICAARQKEILDNAAVMLKPGGVIVYSTCTFSKEENEDVIECFLERH 254 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + E R P ++ G F L R Sbjct: 255 PD--------------------FTLEEMERFWPHKVDGE--------GHFVAKLVR 282 >gi|284161697|ref|YP_003400320.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] gi|284011694|gb|ADB57647.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM 5631] Length = 305 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 123/301 (40%), Gaps = 23/301 (7%) Query: 157 ENFYGKERVLAISDACISPLYIDLTV----KFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + A + D+ + + + + Sbjct: 16 YERIDDSEEFWMYMAKPLRPSFRVNTLKASVEDVVSSLSDRFKLEPIPWCKEGFFSDKEV 75 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 GV + Q+AS+ IP + N+ VLD+CA+PGGKT Q + + + A Sbjct: 76 GRTIEHQIGVIFSQEASSMIPAIVLDPKPNMLVLDMCASPGGKTTQIAQYMKNEGCIVAN 135 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 DV R+ L NL R + + D F K FD VL+DAPCS+ G IR++ Sbjct: 136 DVKYDRINILISNLQRCGVTIARVTMKDGRFFKRFKDTFDRVLIDAPCSNVGMIRKNYRY 195 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 L ++ + Q++L++ G +KP GI+V+S C+LD ++EEVV +L ++ + Sbjct: 196 LKMWSLKEVYSLSRLQKELVMAGYRALKPNGIMVYSTCTLDPLENEEVVDYLLSNTDAKL 255 Query: 389 ELV--PLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + P+N + E +RI P + +GFF ++ +P Sbjct: 256 LEIDLPVNRTEPITEFEGKVYDEEVKKCLRIHPQD--------NDTEGFFIA---KITKP 304 Query: 445 K 445 + Sbjct: 305 E 305 >gi|238912085|ref|ZP_04655922.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 513 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|322616846|gb|EFY13754.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618085|gb|EFY14977.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625756|gb|EFY22575.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626206|gb|EFY23016.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633812|gb|EFY30552.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638966|gb|EFY35659.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640784|gb|EFY37434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644171|gb|EFY40716.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322655402|gb|EFY51710.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660842|gb|EFY57073.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662861|gb|EFY59068.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668045|gb|EFY64204.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674193|gb|EFY70287.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675452|gb|EFY71526.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683133|gb|EFY79149.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686827|gb|EFY82805.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195281|gb|EFZ80461.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199174|gb|EFZ84269.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203806|gb|EFZ88825.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207430|gb|EFZ92378.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217413|gb|EGA02132.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220550|gb|EGA05001.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224660|gb|EGA08933.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231436|gb|EGA15549.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235876|gb|EGA19955.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240445|gb|EGA24488.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245338|gb|EGA29338.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246705|gb|EGA30677.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253560|gb|EGA37388.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323266811|gb|EGA50297.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269017|gb|EGA52473.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 513 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDNAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|167039631|ref|YP_001662616.1| NOL1/NOP2/sun family RNA methylase [Thermoanaerobacter sp. X514] gi|307725043|ref|YP_003904794.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X513] gi|166853871|gb|ABY92280.1| putative RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X514] gi|307582104|gb|ADN55503.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X513] Length = 460 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 16/256 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPRPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ K+R++ L N++R+ + I + + FD +LV Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + Q+ +L +S +KPGGI+V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQKNILRNVVSLLKPGGILVYSTCTFSPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429 +E V++ L P S ++ PE +R+ P + Sbjct: 240 NEGVIKNFLEEYPEFEVEESEMSKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRRLIQPK 445 G F LR+ + + Sbjct: 294 --GHFIAKLRKKEEEE 307 >gi|168241450|ref|ZP_02666382.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|198244837|ref|YP_002215291.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352487|ref|YP_002226288.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856644|ref|YP_002243295.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226725342|sp|B5FTI4|RSMF_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|226725343|sp|B5R2S1|RSMF_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|226725344|sp|B5R8V2|RSMF_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|257096811|sp|B4TKI0|RSMF_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|197939353|gb|ACH76686.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272268|emb|CAR37145.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205339225|gb|EDZ25989.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206708447|emb|CAR32768.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326623036|gb|EGE29381.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 479 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLNSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++EEV + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEEVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|289826537|ref|ZP_06545617.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 510 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|205358008|ref|ZP_02574896.2| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328183|gb|EDZ14947.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|312912840|dbj|BAJ36814.1| 16S rRNA methyltransferase F [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323130126|gb|ADX17556.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 513 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|257096813|sp|A9MV57|RSMF_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 479 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|37677324|ref|NP_937720.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016] gi|37201870|dbj|BAC97690.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus YJ016] Length = 415 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 75/441 (17%), Positives = 141/441 (31%), Gaps = 64/441 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V+ + L + + L +Q + + LR L + D + Sbjct: 28 ILDLVLNEGSPLDRAYSRHFSE---LNLISAEQARITMVTGDLLRRLNLYCFLADIDASN 84 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 ++ +R+ + + + K + L + + Sbjct: 85 -------ISRESMRL---------IHIWHKFH-GLALPKTNYAEAIEDDLFQAKMEEAKA 127 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 + + ++ E L L +K D + A +L Sbjct: 128 QPALWDGCPEWLDVLGERELGELWAAERSALAKPAKRYLRVNL-----LKCDRDDLAKRL 182 Query: 194 NAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 N + T ++ FA+G + QDA + + V+D Sbjct: 183 NKEGVSTVPVEGVESALEVTSNSALFKTQSFADGWFEQQDAGSQKVAAALDVKPGMRVID 242 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYC 302 CA GGKT ++ ++ A+DV + +L L+ R + + Sbjct: 243 ACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAGAHNVETRLITSSKTIKR 302 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K D VL+D PCS G ++R+PD W + + Q +L VK GG++V Sbjct: 303 LKLSADRVLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILASYSRMVKVGGMLV 362 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++ V L ++P + N Sbjct: 363 YATCSIMPCENRGQVDAFLAANPHFRLIDDEN---------------------------- 394 Query: 423 IDGVSSGMDGFFAVALRRLIQ 443 I +SG DGF+ L R+ + Sbjct: 395 ITPANSGFDGFYLARLERIAE 415 >gi|320528347|ref|ZP_08029509.1| NOL1/NOP2/sun family protein [Solobacterium moorei F0204] gi|320131261|gb|EFW23829.1| NOL1/NOP2/sun family protein [Solobacterium moorei F0204] Length = 438 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 16/234 (6%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTA 268 + P G +++Q+ SAS V + + VLD+CAAPG K+ Q+ + A Sbjct: 70 VGFTPEHMSGFFYIQEPSASSAVTILEPKPGMKVLDMCAAPGSKSTQISELLHQCGLLVA 129 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326 ++ R L N++R ++ D D FD VL DAPCS G R+ Sbjct: 130 NEIHPTRARVLLENVERCGSANTIVLNNDPKDISKAFPEFFDMVLCDAPCSGEGMFRKED 189 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +++ A Q +L + +KPGGI+V+S C+ +++E +QK ++ + Sbjct: 190 QAVEQWSLENVQACAVRQIAILNEAYKCLKPGGIMVYSTCTFAMEENELCIQKFIQEH-L 248 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + LVP+N + + + + RI P G +G F L++ Sbjct: 249 DMHLVPINVEFGRKA-FDLGSHTDYARRIFP---------MDGGEGHFIAKLKK 292 >gi|114766380|ref|ZP_01445362.1| possible NOL1/NOP2/sun family protein [Pelagibaca bermudensis HTCC2601] gi|114541413|gb|EAU44460.1| possible NOL1/NOP2/sun family protein [Roseovarius sp. HTCC2601] Length = 384 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 128/449 (28%), Gaps = 80/449 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR ++ +L + L S F +D+ VR V +R Sbjct: 1 MTP--AARVQAAAEVLDRI-AAGTPAEQALLGWSRASRFAG--SKDRAAVRDHVFDVMRR 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + + LLR D + A + + Sbjct: 56 WR------STAASGGGESGRARMLGLLR--------QQGTDPDTLFTGQGHAPKPLGDAE 101 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI- 178 A + A +P+W + G E Sbjct: 102 RAA--------------GRVPEGAEALDLPDWLWSDWQASLGAEAAATAEQLRHRAPVFL 147 Query: 179 ---DLTVKFDIETWAHKLNAVMLPTGGI-----RLKELPESIVSLPGFAEGVWWVQDASA 230 L A + + + + E + F +G+ +QDA++ Sbjct: 148 RINTLRATQAAAIAALSADGIATRPAPLADTALEVIEGARKVARSKAFTDGLVELQDAAS 207 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 V VLD CA GGK A V A D + R+ L R Sbjct: 208 QAVVAALPLAPGQRVLDYCAGGGGKALAMASRLSGLVEAHDANPARMSDLPARAIRAGAE 267 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 E P+ +D VL D PCS +G+ RR P+ W D + + Q ++L Sbjct: 268 IAITQE-------PRGPYDLVLCDVPCSGSGSWRRAPEGKWRLTADGLAELTAIQGRILD 320 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V GG + ++ CS+ ++ V L P +L+ Sbjct: 321 TVAPLVARGGTLAYATCSMLATENGARVAAFLAGHP------------------GWSLAR 362 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 E + P S G DGF+ L Sbjct: 363 E--RQFLP---------SDGGDGFYVACL 380 >gi|16765191|ref|NP_460806.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|81522670|sp|Q8ZNZ2|RSMF_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|16420383|gb|AAL20765.1| putative rRNA methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261247032|emb|CBG24849.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993815|gb|ACY88700.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158374|emb|CBW17873.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321224484|gb|EFX49547.1| Ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332988737|gb|AEF07720.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 479 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|296101829|ref|YP_003611975.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056288|gb|ADF61026.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 480 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + +L V G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YHWQLTPVPWCEEGFWIEREDEASLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMANRGAILANEFSASRVKVLHANISRCGIQNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAALPEAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIASTQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++EEV + P VE +PLN + + D A++PEG++ + P Sbjct: 240 GTLVYSTCTLNRDENEEVCLWLKAQYPDAVEFLPLNDLFASAED---AITPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|204931095|ref|ZP_03221921.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320139|gb|EDZ05344.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 513 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|194734489|ref|YP_002114882.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709991|gb|ACF89212.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 513 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 331 IYDCE--------GFFVARLRKM 345 >gi|325566947|ref|ZP_08143725.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus ATCC 12755] gi|325159119|gb|EGC71264.1| NOL1/NOP2/sun family protein [Enterococcus casseliflavus ATCC 12755] Length = 510 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 13/226 (5%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I + VLDLCAAPGGKT Q + + A ++ + Sbjct: 131 HQAGYVYSQEPSAMIVATIAAAQPGERVLDLCAAPGGKTTQLASQLQGKGLLVANEIFPK 190 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + FD ++VDAPCS G R+ P L Sbjct: 191 RAKILSENVERWGFPNVVVTNQAPQELSRHFPQFFDKIVVDAPCSGEGMFRKDPVALEEW 250 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + A Q+ +L Q ++ +KPGG +++S C+ +++E ++ ++ P +E + Sbjct: 251 QAETPDQCAIRQKDILAQAVAMLKPGGQLIYSTCTFAPEENEAMMAWLMEEYPFTIEAID 310 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + + A E IR+ P + + G FA L Sbjct: 311 LANVSHGRSEWGAASGIEKTIRLWPHLNQGE--------GHFAAKL 348 >gi|295104774|emb|CBL02318.1| tRNA and rRNA cytosine-C5-methylases [Faecalibacterium prausnitzii SL3/3] Length = 512 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 73/310 (23%), Positives = 122/310 (39%), Gaps = 14/310 (4%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTV---KFDIETWAHK----LNAVMLPT 200 +P + E+ E +R + A +TV + E +A + L Sbjct: 1 MPTEYFEQRERALLGQRYEQLYAAPQQTAERGVTVSALRTTPEQFAQRADFPLEPSPFCK 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + + P GV++ Q+ SAS L G + VLDLCAAPGGK++QL Sbjct: 61 AAFVVHQPDFKPGRHPYHHAGVFYSQEPSASSAAPLLGVQPGMRVLDLCAAPGGKSSQLA 120 Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + + R E L+ NL+R+ + ++ FD VLVDAP Sbjct: 121 AALQGRGVLVSNEYVAARAEILKSNLERMGVSNAVVLNETPARIAEALPEFFDRVLVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P L + + A ++L + + PGG +V+S C+ ++ E Sbjct: 181 CSGEGMFRKEPVALQQHCEALVKQCAELGAQILDCAAAALAPGGQLVYSTCTFAPEEDEG 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V L+ P L + + A + G + + + +I G +G F Sbjct: 241 QVAAFLQRHP-EFVLADVLGNVDYTFGSAGEENRTGGLPLDVSKVRRIWPCQGG-EGHFM 298 Query: 436 VALRRLIQPK 445 L + P+ Sbjct: 299 ARLVKAGTPR 308 >gi|27367523|ref|NP_763050.1| tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus CMCP6] gi|27359095|gb|AAO08040.1|AE016812_22 tRNA and rRNA cytosine-C5-methylase [Vibrio vulnificus CMCP6] Length = 404 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 75/441 (17%), Positives = 141/441 (31%), Gaps = 64/441 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +L V+ + L + + L +Q + + LR L + D + Sbjct: 17 ILDLVLNEGSPLDRAYSRHFSE---LNLISAEQARITMVTGDLLRRLNLYCFLADIDASN 73 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 ++ +R+ + + + K + L + + Sbjct: 74 -------ISRESMRL---------IHIWHKFH-GLALPKTNYAEAIEDDLFQAKMEEAKA 116 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 + + ++ E L L +K D + A +L Sbjct: 117 QPALWDGCPEWLDVLGERELGELWAAERSALAKPAKRYLRVNL-----LKCDRDDLAKRL 171 Query: 194 NAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 N + T ++ FA+G + QDA + + V+D Sbjct: 172 NKEGVSTVPVDGVESALEVTSNSALFKTQSFADGWFEQQDAGSQKVAAALEVKPGMRVID 231 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYC 302 CA GGKT ++ ++ A+DV + +L L+ R + + Sbjct: 232 ACAGAGGKTLHLAAMMAGKGRLLAMDVEEWKLNNLKERARRAGAHNVETRLITSSKTIKR 291 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K D VL+D PCS G ++R+PD W + + Q +L VK GG++V Sbjct: 292 LKLSADRVLLDVPCSGLGVLKRNPDAKWRDTEERLPVLMELQAHILASYSRMVKVGGMLV 351 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++ V L ++P + N Sbjct: 352 YATCSIMPCENRGQVDAFLAANPHFRLIDDEN---------------------------- 383 Query: 423 IDGVSSGMDGFFAVALRRLIQ 443 I +SG DGF+ L R+ + Sbjct: 384 ITPANSGFDGFYLARLERIAE 404 >gi|163731783|ref|ZP_02139230.1| NOL1/NOP2/sun family protein, putative [Roseobacter litoralis Och 149] gi|161395237|gb|EDQ19559.1| NOL1/NOP2/sun family protein, putative [Roseobacter litoralis Och 149] Length = 386 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 79/436 (18%), Positives = 137/436 (31%), Gaps = 74/436 (16%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 L V + + L S F +D+ VR V LR + A+ V Sbjct: 14 LDAV-SQGRAAEQALTRWARQSRFAG--SKDRAAVRDHVFDVLRLKDTVAALGGGVSGR- 69 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 L + + + Y + + L + Sbjct: 70 ----------ALMLGL--LRYNGLDPSEFFN--------------AQGYAPDPLSDEEQS 103 Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVK-FDIETWAHK 192 + + +PEW E G E + + + +K D+ T Sbjct: 104 RGTDRDTACALWNLPEWLVPEFERSLGAEAGAVAAALTHRGPVSLRVNLKEADVATAMQN 163 Query: 193 LNAVMLPTGGIRLKE-------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L + + T + + + + + G +QDA++ + L+ Sbjct: 164 LQSDGVVTTANPVAQTALTVIEGARRVRNTTAYLTGQVELQDAASQAVIDALP--QALTC 221 Query: 246 LDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 LD CA GGK A +V A D R+ L +R I E+ Sbjct: 222 LDYCAGGGGKALAMAAQPNRRVYAHDSDPARMRDLSPRAERAG---VGIQELSTDQLRTH 278 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FD VL DAPCS +G RR P+ W+ + + Q+ +L Q + G ++++ Sbjct: 279 MPFDLVLCDAPCSGSGAWRRSPEAKWSFTAARLEELQAIQQDILQQAAVLLSENGWLIYA 338 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS+ K ++E+ V+ L +P ++ Sbjct: 339 TCSVLKAENEDQVETFLSRNPD-----------------------------WQCRYQRRW 369 Query: 425 GVSSGMDGFFAVALRR 440 +S DGF+ L R Sbjct: 370 PLSENCDGFYTAHLTR 385 >gi|168238457|ref|ZP_02663515.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|257096814|sp|B4TY18|RSMF_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|197288700|gb|EDY28075.1| ribosomal RNA small subunit methyltransferase F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 479 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 124/263 (47%), Gaps = 21/263 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 60 YGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 180 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 240 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 297 IYDCE--------GFFVARLRKM 311 >gi|209767734|gb|ACI82179.1| putative rRNA methylase [Escherichia coli] Length = 481 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 182 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 242 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLNVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|57642057|ref|YP_184535.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein [Thermococcus kodakarensis KOD1] gi|57160381|dbj|BAD86311.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing RNA-binding PUA domain [Thermococcus kodakarensis KOD1] Length = 383 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 S+ L F EG+++ Q + + ++ ++D+ AAPGGKT+ + + + ++ Sbjct: 168 SLSELESFKEGLFYAQSLPSMVASRVLEPSEEDLIIDMAAAPGGKTSHIAQLMQNRGEII 227 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D S+ RL K+ L RL + +I MDA D +L+DAPC++ G P Sbjct: 228 AIDKSRNRLRKMEEELKRLGVKNVRLIHMDARKLPELGIEADKILLDAPCTALGI---RP 284 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + TR DI +A +QR + I ++ GG +V+S C++ +++E V+ +L+ Sbjct: 285 KLWETRTPKDIEATARYQRAFIWAAIKSLRKGGTLVYSTCTISYEENEANVKYMLQK--- 341 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + EG R P+ GFF LR++ Sbjct: 342 -----GLKLEEQSVFIASHGIDMEGVQRFYPN--------RHLTQGFFIAKLRKV 383 >gi|288549761|ref|ZP_05968079.2| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Enterobacter cancerogenus ATCC 35316] gi|288317737|gb|EFC56675.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Enterobacter cancerogenus ATCC 35316] Length = 487 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 70/262 (26%), Positives = 126/262 (48%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + +L V G ++ E + S G++++Q+AS+ +PV N Sbjct: 67 YRWQLTPVPWCEEGFWIERDDEEALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNLPA 126 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R ++ + D Sbjct: 127 RVMDVAAAPGSKTTQIAARMGNQGAILANEFSASRVKVLHANISRCGIHNVALTHFDGRV 186 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 187 FGAALPETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPG 246 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++E+V + P VE +PL+ + + + A +PEG++ + P Sbjct: 247 GTLVYSTCTLNRDENEDVCLWLKAQYPDAVEFLPLDDLFNAAKESA---TPEGFLHVFPQ 303 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 304 IYDCE--------GFFVARLRK 317 >gi|157145396|ref|YP_001452715.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Citrobacter koseri ATCC BAA-895] gi|167012766|sp|A8AFL6|RSMF_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|157082601|gb|ABV12279.1| hypothetical protein CKO_01138 [Citrobacter koseri ATCC BAA-895] Length = 479 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTL--NNL 243 + L V G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWSLTPVPWCEEGFWIERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 ++D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RIMDVAAAPGSKTTQIAARMNNQGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAALPETFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTCTLNREENESVCLWLKETYPEAVEFLPLGDLFP---GAERALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRKTA 312 >gi|222623587|gb|EEE57719.1| hypothetical protein OsJ_08204 [Oryza sativa Japonica Group] Length = 713 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 123/338 (36%), Gaps = 46/338 (13%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTG 201 ++ E + +++ + ++ L A L Sbjct: 229 YYGYNDFLVEAFIEIFPAVKLVELLESFEKRPPECLRTNTLKTRRRDLAAALIPRGFNLD 288 Query: 202 GIRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I + + + G + Q AS+ +PV ++D+ AAPG Sbjct: 289 PIGKWSKVGLVVYDSTISAGATVEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPG 348 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLF 307 GKT + + + + A + +++RL L N+ R+ + + D + Sbjct: 349 GKTTYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMNSV 408 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG-------------ISF 354 D VL+DAPC+ TGTI + P + ++ +DI A Q+ L + + Sbjct: 409 DRVLLDAPCTGTGTIWKDPQIKTSKGIEDIRDCAFVQKFFLNRAVILYWLSTSITLKLQL 468 Query: 355 V-----------KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 + K GG +V+S CSL ++E VV L+ V+LVP + + Sbjct: 469 LLAAIDLVDANSKTGGYIVYSTCSLMIPENEAVVDYALKKR--NVKLVPCGLDFGRP--- 523 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E + D + + MDGFF L++L Sbjct: 524 GFIRFREHRFHTSLDKTRRFYPHVNNMDGFFVAKLKKL 561 >gi|317048471|ref|YP_004116119.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. At-9b] gi|316950088|gb|ADU69563.1| RNA methylase, NOL1/NOP2/sun family [Pantoea sp. At-9b] Length = 472 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-- 242 + +L + G + E + S+ G++++Q+AS+ +PV Sbjct: 55 ADYGWRLTPIPWCAEGFWIDRDDESLPLGSVAEHLSGLFYIQEASSMLPVAALFDAAPDA 114 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 V+D+ AAPG KT Q+ + + + A + S R++ L N+ R + + D Sbjct: 115 HQVMDVAAAPGSKTTQIAALMHNQGAILANEYSASRVKVLHANISRCGVSNVALTHFDGR 174 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FDA+L+DAPCS G +R+ PD L + A QR L+ ++P Sbjct: 175 VFGAALPEQFDAILLDAPCSGEGVVRKDPDALRNWTLASTEEIAATQRDLIDSAFHALQP 234 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +++S C+L++ ++++V+ + + P VE++ L + AL+PEG++ + P Sbjct: 235 GGTLIYSTCTLNQIENQQVISWLQQRYPGTVEILSLAGLFE---GAEQALTPEGYLHVFP 291 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 292 HIFDSE--------GFFVARLRKTA 308 >gi|323143378|ref|ZP_08078065.1| putative ribosomal RNA small subunit methyltransferase B [Succinatimonas hippei YIT 12066] gi|322416844|gb|EFY07491.1| putative ribosomal RNA small subunit methyltransferase B [Succinatimonas hippei YIT 12066] Length = 452 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 86/440 (19%), Positives = 154/440 (35%), Gaps = 64/440 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +LS V+ L + + L +Q + +N R L + L Sbjct: 66 ILSSVLVDGKPLDKAYAYWFAKVKIQAL---EQGFLIKQINAMFRRLSF--YAIVCCLKR 120 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L+ A+ + + ++A + R+ Sbjct: 121 P-SDLSRHINWLILAYCAE---QEWPLPDIDAEGFDRA--------------GLKERIKI 162 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL 193 K + L + E + L + + +ER + L E H L Sbjct: 163 AKEDELLNEGCPVWLNELCTKELSDKWPQERKALAKEPSRYIRANALK--TTRENLGHVL 220 Query: 194 NAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + T ++ ++ F EG++ QDA + + + V+D Sbjct: 221 SEEGVVTRPVKGVYSALEVTSNAALFRTAAFKEGLFEQQDAGSQLIPPFLDAQPGMRVID 280 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 CA GGKT Q ++ + + ALD +L+ L+ R + + +D+ + Sbjct: 281 ACAGSGGKTLQLAAIMENKGVIIALDTEGWKLDDLKKRSRRAGAFNIETRVIDSTKVIKR 340 Query: 305 --KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 D VL+DAPCS G +RR PD W I++ Q+ +L + VK GGIVV Sbjct: 341 LYDHADRVLIDAPCSGLGVLRRTPDSKWRDLRPRIIELKKIQQDILSRYSQMVKVGGIVV 400 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S CS+ ++E V++ + +S EL+ + + P Sbjct: 401 YSTCSILPSENELQVKEFIANSNGAFELLEDKT-------------------LYP----- 436 Query: 423 IDGVSSGMDGFFAVALRRLI 442 S G DGF+ + R Sbjct: 437 ----SEGFDGFYMAKIIRKA 452 >gi|254585637|ref|XP_002498386.1| ZYRO0G08998p [Zygosaccharomyces rouxii] gi|238941280|emb|CAR29453.1| ZYRO0G08998p [Zygosaccharomyces rouxii] Length = 683 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 123/344 (35%), Gaps = 49/344 (14%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 + + + + + ++L + W + ++ K Sbjct: 72 HAQEVLDLFQQRHLANLTGIEFEGEPVKPPVELPWYPNHLAWQIDVPKSVIRKNPQFAKM 131 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV- 266 +V A G Q+A + IP L + +VLD+CAAPG KTAQ+I + Sbjct: 132 QRFLVVEN---AVGNISRQEAVSMIPPTLLDVQPHHTVLDMCAAPGSKTAQMIEYLHRDN 188 Query: 267 -------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLF 307 A D +R L L RL+ ++ DA + F Sbjct: 189 DEPSGFVVANDADAKRSHMLVHQLKRLNSANLIVVNHDAQFFPRVKAHPDHTNKKDILRF 248 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL D PCS GT+R++ +V T + + Q +L +G+ +K GG +V+S CS Sbjct: 249 DRVLCDVPCSGDGTMRKNVNVWRDWTTQNGLALHNVQLNILNRGLHLLKSGGRLVYSTCS 308 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-------------------------- 401 ++ ++E VV + LR V LV + + Sbjct: 309 MNPIENEAVVAEALRKWGGKVRLVDCSDKLPGLVRSNGINQWPVLNRNMETKEKGEDGTN 368 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 D + E R D ++ GFF L ++ +P+ Sbjct: 369 DSWFPPTDEEAARFHLDYCVRVYPHQQNTGGFFITVLEKVEEPE 412 >gi|15668197|ref|NP_246989.1| proliferating cell nuclear antigen [Methanocaldococcus jannaschii DSM 2661] gi|2500953|sp|Q60343|TRM4_METJA RecName: Full=tRNA (cytosine-5-)-methyltransferase Trm4; AltName: Full=aTrm4 gi|299856663|pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin gi|299856664|pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin gi|299856676|pdb|3AJD|A Chain A, Crystal Structure Of Atrm4 gi|1592257|gb|AAB98007.1| proliferating-cell nucleolar antigen, FMU/NOL1/NOP2 family [Methanocaldococcus jannaschii DSM 2661] Length = 274 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 25/249 (10%) Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 +K+ P SI S P + G + Q S+ IP + + +LD+CAAPGGKT L Sbjct: 43 YAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLA 102 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLV 312 + + + A+++SK R + L+ N++R+ + II D Y + FD +L+ Sbjct: 103 QLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL 162 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS ++ +V +DI + Q++L+ GI +K G +V+S CS++ ++ Sbjct: 163 DAPCSGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEE 218 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +EEV++ +L+ VEL+ + + +K I++ G +R+ P Sbjct: 219 NEEVIKYILQKR-NDVELIIIKANEFKGINIKEGYIK-GTLRVFPPNEP----------- 265 Query: 433 FFAVALRRL 441 FF LR++ Sbjct: 266 FFIAKLRKI 274 >gi|258508496|ref|YP_003171247.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus GG] gi|257148423|emb|CAR87396.1| tRNA and rRNA cytosine-C5-methylases [Lactobacillus rhamnosus GG] gi|259649806|dbj|BAI41968.1| RNA methyltransferase [Lactobacillus rhamnosus GG] Length = 443 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 15/226 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277 G+ + Q+ SA + VLDLCAAPGGK+ QL + + +++ R + Sbjct: 73 GLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGLLVSNEINGPRSK 132 Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ PD + D Sbjct: 133 VLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFRKDPDAIQYWHRD 192 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A Q +L I ++PGG +++S C+ ++ E+++ +L + +E + + Sbjct: 193 YPAECAARQEVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAHYDLTLEPIKKSP 252 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +PE +R+ P ++ G F LR Sbjct: 253 GMVAGRPEWADGNPELAKTVRLFPHLVRGE--------GHFVAKLR 290 >gi|199598407|ref|ZP_03211826.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001] gi|199590726|gb|EDY98813.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001] Length = 443 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 15/226 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277 G+ + Q+ SA + VLDLCAAPGGK+ QL + + +++ R + Sbjct: 73 GLVYSQEPSAQFVGTVAAPQKGERVLDLCAAPGGKSTQLASYLGETGLLVSNEINGPRSK 132 Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D + FD +LVDAPCS G R+ PD + D Sbjct: 133 VLSGNLERWGSRNILVTNNDPDTLAAAWPQTFDRILVDAPCSGEGMFRKDPDAIQYWHRD 192 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A Q +L I ++PGG +++S C+ ++ E+++ +L + +E + + Sbjct: 193 YPAECAARQEVILQAAIKMLRPGGSLIYSTCTFSPEEDEQIIAWLLAHYDLTLEPIKKSP 252 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +PE +R+ P ++ G F LR Sbjct: 253 GMVAGRPEWADGNPELAKTVRLFPHLVRGE--------GHFVAKLR 290 >gi|189403504|ref|ZP_03007106.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4486] gi|217328807|ref|ZP_03444888.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. TW14588] gi|189360318|gb|EDU78737.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4486] gi|217318154|gb|EEC26581.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. TW14588] gi|326343764|gb|EGD67526.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. 1125] Length = 514 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 95 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 154 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 155 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 214 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 215 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 274 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 275 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 331 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 332 IYDCE--------GFFVARLRK 345 >gi|300309418|ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1] gi|300072203|gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum seropedicae SmR1] Length = 424 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 108/447 (24%), Positives = 170/447 (38%), Gaps = 71/447 (15%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 +L L + S + + ++ + +R L +++L + Sbjct: 18 GHALPQALAQIFSRSDAPAPA---RGAIQDLSYRAMRSLGLTESLLGLLANKPPQP---- 70 Query: 82 LQQLLRVSVAQILY---------------LDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++L+ + VVD AV+ A E +VN+ Sbjct: 71 ----------EVLHGLLVTALALLVNEEESGYDSFTVVDQAVQAAAISPEMSFAKGVVNA 120 Query: 127 ILRR----VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 ILRR + + + G P W+ +RL+ Y E+ AI A + L V Sbjct: 121 ILRRLLRERATLMPQATKTPPGTWNYPTWWIDRLKAAYP-EQWQAILHAGNQAPPLTLRV 179 Query: 183 KFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 T A L A P + LPGFAEGV VQDA+A + Sbjct: 180 NRRRTTVAQYLDTLQQAGMAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAAAQLAAP 239 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT-ALDVSKRRLEKLRCNLDRLHLYA-EDI 293 L + + VLD CAAPGGKT L+ ALD RRL+++ NLDRL L A Sbjct: 240 LLDVADGMRVLDACAAPGGKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQLKARLTT 299 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + A D+ + FD +L D PC+++G +RRHPD+ W R D + A ++L + Sbjct: 300 GDARADDWWDGQPFDRILADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQ 359 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++P G ++ CSL Q+SE+ + P Sbjct: 360 MLRPDGKLLLVTCSLWPQESEQQAVAFAQKHNAIRLPAPG-------------------- 399 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P ++ DG F ++ Sbjct: 400 QLLP-----TASETADHDGLFYALFQK 421 >gi|160915657|ref|ZP_02077865.1| hypothetical protein EUBDOL_01664 [Eubacterium dolichum DSM 3991] gi|158432133|gb|EDP10422.1| hypothetical protein EUBDOL_01664 [Eubacterium dolichum DSM 3991] Length = 444 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 15/261 (5%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E L + +++ S+ + A G++++Q+ SAS V++ G VL Sbjct: 46 EEKLCTLKPSAICNKAYYIQDEESSLGNHAAHAAGLFYMQEPSASSAVEILGVEKGDWVL 105 Query: 247 DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 DLCAAPGGKT Q+ + A ++ +R + L N++RL Y I + D Sbjct: 106 DLCAAPGGKTTQIADALAHTGFLVANEIDPKRAQVLLSNMERLGFYECMITNANPKDLTK 165 Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD VLVDAPCS G R+H + + + A Q+ +L +K GI+ Sbjct: 166 AMKGCFDKVLVDAPCSGEGMFRKHSKAMEDWSVEHVKACAQRQKHILENAYEALKESGIL 225 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+ +++EEV+ + P +EL+ ++ + L E +RI P Sbjct: 226 VYSTCTYAMEENEEVIADFMEKHP-DMELLDPCVSFGRCGFPYKDLDSEKLVRILP---- 280 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 +G F LR+ Sbjct: 281 -----MDKGEGHFVAKLRKRA 296 >gi|188025255|ref|ZP_02997418.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4113] gi|189406265|ref|ZP_02827395.2| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC508] gi|208810551|ref|ZP_03252427.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4206] gi|188013980|gb|EDU52102.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4113] gi|189375610|gb|EDU94026.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC508] gi|208725067|gb|EDZ74774.1| ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. EC4206] gi|326342214|gb|EGD65995.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli O157:H7 str. 1044] Length = 506 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 87 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 146 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 147 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 206 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 207 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 266 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 267 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLHVFPQ 323 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 324 IYDCE--------GFFVARLRK 337 >gi|163859032|ref|YP_001633330.1| hypothetical protein Bpet4711 [Bordetella petrii DSM 12804] gi|163262760|emb|CAP45063.1| conserved hypothetical protein [Bordetella petrii] Length = 452 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 106/456 (23%), Positives = 166/456 (36%), Gaps = 72/456 (15%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL----P 76 SLT L ++ + +A+ +R L A+ ++ S Sbjct: 35 DGRSLTDAL---------AGVAPALRPATQAVSFHAMRQLGWAAAIGRRLVQRSPGALFD 85 Query: 77 RKKYSLQQLLR-------------VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 LLR + V A + VV+ AV A + + L Sbjct: 86 ALLQVSLSLLRAPQGEDASAVPAGMPVY-------APHTVVNQAVTAAAGQRALAAYKGL 138 Query: 124 VNSILRRVSREKIELLQRIAG----ISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 +N+ LRR RE+ L +A P W+ ++L Y ++ AI A P + Sbjct: 139 LNASLRRFLRERAALEAAVAKLPEARWNHPAWWVDQLGAAYP-DQWQAILAAANVPPPLT 197 Query: 180 LTVKFDI---ETWAHKLNAVMLPTGGIR----LKELPESIVSLPGFAEGVWWVQDASASI 232 L V E L A + + + + + LPGFA G W VQDA+A + Sbjct: 198 LRVNTRRASVEQVRQALQADGIASEPVGAAGLVLAEARPVAQLPGFAAGWWSVQDAAAQL 257 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE-KLRCNLDRLHLYAE 291 L + VLD CAAPGGKTA L+ + ++ NLDRL L ++ Sbjct: 258 AAPLLAPRDGQRVLDACAAPGGKTAHLLELANLDLLALDADAARLARVEQNLDRLGLRSD 317 Query: 292 DIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + A + FDAVL D PC+++G +RRHPD+ W R D+ ++A Q + Sbjct: 318 RVALAAADAADLDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAPDVARTAALQAR 377 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 + V PGG +++ CS+ + + R L Sbjct: 378 IADALWRTVAPGGRLLYVTCSVFPAEGARQAEAFARRHADAQRLEAPG------------ 425 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ P + DGFF + Sbjct: 426 -------QLLPVAVGATPQAQH--DGFFYALFAKQA 452 >gi|291295690|ref|YP_003507088.1| RNA methylase NOL1/NOP2/sun family [Meiothermus ruber DSM 1279] gi|290470649|gb|ADD28068.1| RNA methylase, NOL1/NOP2/sun family [Meiothermus ruber DSM 1279] Length = 457 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 118/307 (38%), Gaps = 20/307 (6%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL- 205 ++P+ F ++ + G+ + + L V + P I Sbjct: 1 MLPKAFLNKMSDLLGEAFPEFLRALTQADRSYGLRVNTLKLSPEQLRQISPWPLEPIPWS 60 Query: 206 -----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 P + G++++Q+ SA L VLDL AAPGGKT Sbjct: 61 PEGFYYPAEARPGPHPYYYAGLYYIQEPSAQAVGVLADPQPGERVLDLAAAPGGKTTHLA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPC 316 + + + ++ +R+ L N++R A ++ FD V++DAPC Sbjct: 121 ARMQGRGLLISNEIDSKRVRGLLENVERWGANLAVVSAPVEKLAQAWGAYFDRVVLDAPC 180 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G R+ P+V+ ++A Q+ LL V+PGG +V+S C+ +++E+V Sbjct: 181 SGEGMFRKDPEVVRHWGPGAPSRAARIQKTLLAAAADLVRPGGTLVYSTCTFAPEENEQV 240 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGMDGFF 434 + LR+ +E ++ + + P R+ P L G F Sbjct: 241 IADFLRTPGWTLEDARISPLFADGVPAWGDGLPALARTARLWPHRLRGE--------GHF 292 Query: 435 AVALRRL 441 LR++ Sbjct: 293 LARLRKI 299 >gi|283785573|ref|YP_003365438.1| hypothetical protein ROD_18751 [Citrobacter rodentium ICC168] gi|282949027|emb|CBG88630.1| conserved hypothetical protein [Citrobacter rodentium ICC168] Length = 479 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 126/266 (47%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LN 241 ++ L V G + E + S G++++Q+AS+ +PV Sbjct: 58 ASYGWSLTPVPWCAEGFWIAREDEETLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNA 117 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 118 PERVMDVAAAPGSKTTQIAARMGNRGAILANEYSASRVKVLHANISRCGIGNVALTHFDG 177 Query: 299 FDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FDA+L+DAPCS G +R+ P+ L + + A QR+L+ ++ Sbjct: 178 RVFGAALPEMFDAILLDAPCSGEGVVRKDPNALKNWSVESNQEIAATQRELIDSAFHALR 237 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG++V+S C+L+++++E VV + + P VE +PL + ++ ++A + EG++ + Sbjct: 238 PGGVLVYSTCTLNREENESVVHWLKETYPDAVEFMPLGDLFAQA---SLAQTAEGFLHVF 294 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF LR+ Sbjct: 295 PQIYDCE--------GFFVARLRKTA 312 >gi|291542931|emb|CBL16041.1| NOL1/NOP2/sun family putative RNA methylase [Ruminococcus bromii L2-63] Length = 440 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 111/258 (43%), Gaps = 23/258 (8%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L G + +SI + P G ++VQ+ SA+ V + + VLDLCAA Sbjct: 51 ELKKTPFCDEGFYIPSDVKSIGNNPLHHAGAFYVQEPSATSAVTMLDVHEDDYVLDLCAA 110 Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKL 306 PGGK+ Q+ + + ++ + R L N++R+ + + D + Sbjct: 111 PGGKSTQIGAKLNGTGLLWSNEIVRSRANILLSNIERMGISNAVVSNCRPDELCKRLENR 170 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +LVDAPCS G R++ + + A Q +L +K GG +V+S C Sbjct: 171 FDRILVDAPCSGEGMFRKNDAER-EWSIEHVKSCAARQLLILNSAKDALKNGGYMVYSTC 229 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + K+++E V+ + L +P ELV + + + + RI P Sbjct: 230 TFSKEENEGVISRFLAENP-DFELVDSGVTFGRP-------TLDYARRIFP--------- 272 Query: 427 SSGMDGFFAVALRRLIQP 444 G +G FA L + +P Sbjct: 273 MDGGEGHFAAKLHKKGEP 290 >gi|312877027|ref|ZP_07737000.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor lactoaceticus 6A] gi|311796168|gb|EFR12524.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor lactoaceticus 6A] Length = 455 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 15/268 (5%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 ++V+ IE + V G E + P + G+ ++Q+ SA PV+ Sbjct: 41 VSVEEFIEKMGIEFEKVPWCKDGFYYTEEI-RLSKHPYYFAGLVYIQEPSAMFPVEALDI 99 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 VLDLCAAPGGK+ Q + + + DV R++ L N++ L L I+ Sbjct: 100 KEGEKVLDLCAAPGGKSIQIAARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNIVILNN 159 Query: 297 DAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + FD +LVDAPCS G R+ P ++ K QR ++ + Sbjct: 160 KPKEIAESYGAYFDKILVDAPCSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDEL 219 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWI 413 +K G +V+S C+ + +++E ++ L+ V + + I++ + + Sbjct: 220 LKVDGEIVYSTCTFEVEENEGIIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAA 279 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 RI P ++ G F L+++ Sbjct: 280 RIYPHRVKGE--------GHFICKLKKV 299 >gi|213585491|ref|ZP_03367317.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 408 Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAK 265 + S G++++Q+AS+ +PV + V+D+ AAPG KT Q + + Sbjct: 14 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGA 73 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323 + A + S R++ L N+ R + + D + FDA+L+DAPCS G +R Sbjct: 74 ILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVR 133 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + PD L + + A QR+LL ++PGG +V+S C+L++Q++E V + + Sbjct: 134 KDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKET 193 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 VE +PL + D AL+PEG++ + P + + GFF LR++ Sbjct: 194 YADAVEFLPLGDLFP---DADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 240 >gi|304403872|ref|ZP_07385534.1| Fmu (Sun) domain protein [Paenibacillus curdlanolyticus YK9] gi|304346850|gb|EFM12682.1| Fmu (Sun) domain protein [Paenibacillus curdlanolyticus YK9] Length = 478 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 33/247 (13%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 P A G++++Q+ SA + ++LDL AAPGGKT Q Sbjct: 73 WCKTGFYYNEEVRPGKHPYHAAGLYYIQEPSAMSAAEALEAQPGETILDLAAAPGGKTTQ 132 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVD 313 + + + + A ++ R + L N++R + D FD +++D Sbjct: 133 IAGAMQNQGLLIANEIHPARAKILSENVERCGFRNTVVTCATPDQLSERFPVFFDRIMLD 192 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ D + + A Q +L+ +KPGG +V+S C+ ++ ++ Sbjct: 193 APCSGEGMFRKDADAIAEWSPAHVELCAARQADILVHAARMLKPGGRLVYSTCTFNRAEN 252 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+ + L + P E R+ P + G Sbjct: 253 EDAIAAFLEAFP--------------------TFRLEHTERLWPHQCKGE--------GH 284 Query: 434 FAVALRR 440 F L + Sbjct: 285 FVAVLTK 291 >gi|218294931|ref|ZP_03495785.1| RNA methylase, NOL1/NOP2/sun family [Thermus aquaticus Y51MC23] gi|218244839|gb|EED11363.1| RNA methylase, NOL1/NOP2/sun family [Thermus aquaticus Y51MC23] Length = 455 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 15/250 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P F G++++Q+ SA L VLDL AAPGGKT Sbjct: 58 PWCPEGFYYPEEARPGPHPFFYAGLYYIQEPSAQAVGVLVDPRPGERVLDLAAAPGGKTT 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVD 313 + + A +V RR+ L N++R A F VL+D Sbjct: 118 HLAARMGGKGLLLANEVDGRRVRGLLENVERWGAPVAVTQSPPKVLAEAFGAYFHRVLLD 177 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + +++ Q+ LL Q V PGG++V+S C+ +++ Sbjct: 178 APCSGEGMFRKDKEAARHWGPSAPRRASEVQKALLAQAARLVGPGGVLVYSTCTFAPEEN 237 Query: 374 EEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGM 430 E VV L++ P +E L+ + + P+ R+ P LE Sbjct: 238 EGVVAHFLKAHPEFYLEEARLHPLFAPGVPEWGDGHPDLAKTARLWPHRLEGE------- 290 Query: 431 DGFFAVALRR 440 G F RR Sbjct: 291 -GHFLARFRR 299 >gi|260589041|ref|ZP_05854954.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583] gi|260540820|gb|EEX21389.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583] Length = 459 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 120/309 (38%), Gaps = 25/309 (8%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PT 200 +PE F R E A + P L V + + L Sbjct: 3 QLPEKFLSR-MEAMLGEEFPAFLQSYDFPRKFGLRVNTNKISVEEFLKISPFHLEPIPWI 61 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + + P + G++++Q+ SA P F VLDLCAAPGGK + Sbjct: 62 DNGFFYDENDRPSRHPYYFAGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATELG 121 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + A D+S R + L NL+ + + FD +LVDAP Sbjct: 122 AKLQGNGFLVANDISNSRAKALLRNLELFGIKNSMVTNETPAKLAKYFPEFFDKILVDAP 181 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ PDV T D QR++ Q IS +KPGG +++S C+ ++E Sbjct: 182 CSGEGMFRKDPDVAKTWDETRPEFFGKLQREIATQAISMLKPGGELLYSTCTFSPIENEG 241 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMD 431 ++ +L + P +EL+ L+ + + + IRI P +E Sbjct: 242 LISFILENFP-EIELLTLDDYEGFTKGCPDWGNKDTRLKKCIRIFPHHMEGE-------- 292 Query: 432 GFFAVALRR 440 G F +++ Sbjct: 293 GHFLALMKK 301 >gi|322833557|ref|YP_004213584.1| RNA methylase, NOL1/NOP2/sun family [Rahnella sp. Y9602] gi|321168758|gb|ADW74457.1| RNA methylase, NOL1/NOP2/sun family [Rahnella sp. Y9602] Length = 505 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 122/263 (46%), Gaps = 21/263 (7%) Query: 188 TWAHKLNAVMLPTGGIRLKEL---PESIVSLPGFAEGVWWVQDASASIPVQLFGTL--NN 242 ++ L V T G + + + G++++Q+AS+ +PV Sbjct: 81 SYQWDLEPVPWCTEGFWINRHALDESRLGNALSHLAGLFYIQEASSMLPVTALFADGTQP 140 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 V+D+ AAPG KT Q+ + + + A + S R++ L N+ R + + D Sbjct: 141 TLVMDVAAAPGSKTTQIAALMENQGGIVANEYSASRVKVLHANISRCGVSNTALTHFDGR 200 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FDA+L+DAPCS G IR+ PD + + + + A QR+L+ +KP Sbjct: 201 VFGAALPETFDAILLDAPCSGEGVIRKDPDAMSNWSENSVSEIAATQRELIDSAFHALKP 260 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L+ Q++++V Q +L + VE L + A++ EG++ + P Sbjct: 261 GGVLVYSTCTLNAQENQQVCQWLLETYADAVESESLADLFP---GARKAVTQEGYLHVFP 317 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF R+ Sbjct: 318 QVYDSE--------GFFVARFRK 332 >gi|310826142|ref|YP_003958499.1| RNA methylase [Eubacterium limosum KIST612] gi|308737876|gb|ADO35536.1| RNA methylase [Eubacterium limosum KIST612] Length = 462 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 118/314 (37%), Gaps = 26/314 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 IPE FKE++ E + + + + T + Sbjct: 1 MQIPEAFKEKMRGLLNDEDYEKLMSSYDGTVNKGIRTNTLKCTPEEMARKTPFELEPVDW 60 Query: 206 KELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 I P + G+++VQ+ +A + VLDLCAAPGGK+ QL Sbjct: 61 CPTGYYIDSDIRPGKNPAYYAGLYYVQEPTAMTSAEALAPEPGDWVLDLCAAPGGKSTQL 120 Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDA 314 + A ++ R E L N++R+ + + + ++ FD +LVDA Sbjct: 121 ACMLGGQGLLVANELVNNRAEILASNVERMGVPNALLFNEFPERLAARFRERFDKILVDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ + + ++ A Q K+L +KPGG++V+S C+ +++E Sbjct: 181 PCSGEGMFRKDNGAAEEWNPERVLHCAKRQIKILESVDKLLKPGGVMVYSTCTFSPEENE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSG 429 +V++ L + EL+ ++ + + P + Sbjct: 241 QVIEDFLGN--DRYELMDIDLGGLNDRGRPEWSEKGTPALTKTLHVMPFHVRGE------ 292 Query: 430 MDGFFAVALRRLIQ 443 G F LR+ + Sbjct: 293 --GHFIAKLRKTAE 304 >gi|331083252|ref|ZP_08332365.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404333|gb|EGG83878.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium 6_1_63FAA] Length = 459 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 120/309 (38%), Gaps = 25/309 (8%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PT 200 +PE F R + A + P L V + + L Sbjct: 3 QLPEKFLSR-MEAMLGKEFPAFLQSYDFPRKFGLRVNTNKISVEEFLEISPFHLEPIPWI 61 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + + P + G++++Q+ SA P F VLDLCAAPGGK + Sbjct: 62 DNGFFYDENDRPSRHPYYFAGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATELG 121 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAP 315 + + A D+S R + L NL+ + + FD +LVDAP Sbjct: 122 AKLQGNGFLVANDISNSRAKALLRNLELFGIKNSMVTNETPAKLAKYFPEFFDKILVDAP 181 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ PDV T D QR++ Q IS +KPGG +++S C+ ++E Sbjct: 182 CSGEGMFRKDPDVAKTWDETRPEFFGKLQREIATQAISMLKPGGELLYSTCTFSPIENEG 241 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMD 431 ++ +L + P +EL+ L+ + + + IRI P +E Sbjct: 242 LISFILENFP-EIELLTLDDYEGFTKGCPDWGNKDTRLKKCIRIFPHHMEGE-------- 292 Query: 432 GFFAVALRR 440 G F +++ Sbjct: 293 GHFLALMKK 301 >gi|78045097|ref|YP_360848.1| NOL1/NOP2/sun family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77997212|gb|ABB16111.1| NOL1/NOP2/sun family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 20/290 (6%) Query: 164 RVLAISDACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGF 218 + + +P + L + + E + + L E + P Sbjct: 15 AAEKLKEVINAPPFRGLRINPEKISQEDLYRRYGYLETVPWCPEGYYLSEDMFLGKDPWH 74 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRR 275 G +++Q+ SA +PV++ VLDL AAPGGK+ Q++ + A +V+ R Sbjct: 75 WAGAFYLQEPSAMLPVEVLDPKPGDKVLDLAAAPGGKSTQILSKLKGEGILVANEVNSSR 134 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + L NL+R ++ + K FD +LVDAPCS G R++P + Sbjct: 135 AKVLTENLERWGYENFLVLNESPPNLEEKFEAYFDRILVDAPCSGEGMFRKNPKAIDEWS 194 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVP 392 + ++ + Q+KLL +K GG++V+S C+ + +++E VV L+ +P +E + Sbjct: 195 IEHVLGCSVRQKKLLTTAAKLLKEGGVMVYSTCTFNPEENERVVAWFLKQNPNFALESIE 254 Query: 393 LNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A + + RI P + G FA + +L Sbjct: 255 IKGVSPGVPEWAESNLELQKTFRIWPFQQKGE--------GHFAARMVKL 296 >gi|116753601|ref|YP_842719.1| NOL1/NOP2/sun family RNA methylase [Methanosaeta thermophila PT] gi|116665052|gb|ABK14079.1| ribosomal RNA methyltransferase NOP2 [Methanosaeta thermophila PT] Length = 302 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 110/251 (43%), Gaps = 15/251 (5%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + + L+ E L F G+ VQ+ + +P + +LDLCAAPGGK Sbjct: 55 ERMRWYPLGLRLDAEKPGRLMEFHMGLIHVQEELSMLPPVVLDPQPGERILDLCAAPGGK 114 Query: 256 ---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 + + + V A D S R+ LR NL+RL + D + P+ FD LV Sbjct: 115 AAQISMQMSNKGLVVANDSSSARIVPLRANLERLGAVNVVVTSYDGRRF-PQYNFDRALV 173 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCSS GT RR+P+V+ Q LL + I KPGG+VV+S C+ ++ Sbjct: 174 DAPCSSEGTARRYPEVIARCSAKRSADLQNLQVSLLRRAIQLTKPGGVVVYSTCTFAPEE 233 Query: 373 SEEVVQKVLRSSP-IPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429 +E VV +VL + + L S+ + ++ E R P + Sbjct: 234 NEGVVSRVLDLADLESFTIQGLRSSQGIASWNSIDYGEELVKCRRYYPH--------END 285 Query: 430 MDGFFAVALRR 440 GFF LRR Sbjct: 286 TGGFFVAKLRR 296 >gi|294140752|ref|YP_003556730.1| ribosomal RNA small subunit methyltransferase B [Shewanella violacea DSS12] gi|293327221|dbj|BAJ01952.1| ribosomal RNA small subunit methyltransferase B, putative [Shewanella violacea DSS12] Length = 385 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 78/440 (17%), Positives = 143/440 (32%), Gaps = 70/440 (15%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 V+ + L + L+ +Q + + LR L L V + R Sbjct: 2 VLSEGKPLDRAYSHHFS---GLQLAPSEQARITVVAGDILRKLNLYCY-LSDVKSEEMSR 57 Query: 78 KKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 L V + + L++ + R Sbjct: 58 MGTRLLN-----VWHMFHELELPKMQ-------------------YALQMDEREYFDRLE 93 Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERV-LAISDACISPLYIDLTV-KFDIETWAHKLN 194 + + A PEW + G + + Y+ + + K E KL Sbjct: 94 KAKVQPALWDGCPEWLDTMGQAQLGDAWAKERAALSTQPKRYLRVNLLKCTREDLGKKLR 153 Query: 195 AVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 + T + + ++ F +G + QDA + + + V+D Sbjct: 154 NEQVQTKEVEGVDTALEVTSDSALFRTESFKKGWFEQQDAGSQLVAAAVDAKPGMRVVDA 213 Query: 249 CAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE--DIIEMDAFDYCP 303 CA GGK A + ++ A+DV + +L+ L+ R + + II Sbjct: 214 CAGAGGKTLSIAAQMQGKGRLLAMDVEQWKLDSLKQRARRANAHNVETRIIASSKTIKRL 273 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 K D VL+D PCS G ++R+PD W + + Q+ +L VK GGI+++ Sbjct: 274 KLSADRVLLDVPCSGLGVLKRNPDAKWRDTPERLPVLVALQKHILQSYSRMVKVGGILIY 333 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 + CS+ +++ + + L + + N I Sbjct: 334 ATCSIMPEENRDQIDAFLAENDHFKLIEDEN----------------------------I 365 Query: 424 DGVSSGMDGFFAVALRRLIQ 443 SG DGF+ L R+ + Sbjct: 366 SVADSGFDGFYLAKLERISE 385 >gi|242399817|ref|YP_002995242.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739] gi|242266211|gb|ACS90893.1| Sun/NOL1/NOP nucleolar protein [Thermococcus sibiricus MM 739] Length = 383 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L + +G ++VQ + + + ++D+ AAPGGKT+ + + ++ Sbjct: 167 SLNELESYEKGYFYVQTLPSMVASHVLDPKEGDLIIDMTAAPGGKTSHIAQLLENRGEIL 226 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 ALD SK RL K++ L+RL + +I+MD+ + D +L+DAPC++ G P Sbjct: 227 ALDKSKNRLSKMKNELERLGVKNVKLIQMDSRNLPELGIQADKILLDAPCTALGV---RP 283 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + TR DI +A +Q+ + I ++ GG++V+S C+L +++E V+ +L+ Sbjct: 284 KLWETRTPKDIDATARYQKHFINAAIKSLRKGGVLVYSTCTLSYEENEGNVKYMLKK--- 340 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L K + + R P GFF LR++ Sbjct: 341 -----GLKLEEQKLFIGSPGIGINKVQRFYPH--------KHKTQGFFIARLRKV 382 >gi|225374853|ref|ZP_03752074.1| hypothetical protein ROSEINA2194_00476 [Roseburia inulinivorans DSM 16841] gi|225213314|gb|EEG95668.1| hypothetical protein ROSEINA2194_00476 [Roseburia inulinivorans DSM 16841] Length = 281 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 54/235 (22%), Positives = 94/235 (40%), Gaps = 11/235 (4%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK-- 255 T + P GV+++Q+ SA P + +LDLCAAPGGK Sbjct: 48 PWTTNGYYYSGNDQPGRHPYHEAGVYYIQEPSAMAPAEYLMAEPGERILDLCAAPGGKSS 107 Query: 256 -TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 A + + ++ R + L N++R+ + + FD +LV Sbjct: 108 QIACSMQGEGLIVCNEIHPARAKILSENIERMGVCNALVTNETPQKLSDNFREYFDRILV 167 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R++ D +++ A Q ++L +KPGG +V+S C+ + Sbjct: 168 DAPCSGEGMFRKNEDACDEWSPENVENCAARQAEILDCAAEMLKPGGRLVYSTCTFAPTE 227 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEK 422 +E + + L P ++P+ + E IR+ P L++ Sbjct: 228 NEGSISRFLERHP-EFSILPVEKKDGMMPGVPAWTEHPADGLEHTIRLWPHHLKR 281 >gi|323257734|gb|EGA41417.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 406 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 18/238 (7%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAK 265 + S G++++Q+AS+ +PV + V+D+ AAPG KT Q + + Sbjct: 12 PLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGA 71 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323 + A + S R++ L N+ R + + D + FDA+L+DAPCS G +R Sbjct: 72 ILANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVR 131 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + PD L + + A QR+LL ++PGG +V+S C+L++Q++E V + + Sbjct: 132 KDPDALKNWSPESNLDIAATQRELLDNAFHALRPGGTLVYSTCTLNRQENEAVCLWLKET 191 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 VE +PL + D AL+PEG++ + P + + GFF LR++ Sbjct: 192 YADAVEFLPLGDLFP---DADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 238 >gi|242239507|ref|YP_002987688.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya dadantii Ech703] gi|242131564|gb|ACS85866.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech703] Length = 481 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV---WWVQDASASIPVQLFGT--LN 241 E + +L + G L E+++ L E + +++Q+AS+ +PV + Sbjct: 59 EPYGWRLAPIPWCDEGFWLLNADEAVLRLGNALEHLGGLFYIQEASSMLPVNALFHGGIT 118 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD+ AAPG KT Q + + + A + S R++ L NL R + + D Sbjct: 119 PERVLDMAAAPGSKTTQLAARMRNQGGIVANEYSSSRVKVLHANLHRCGVSNTALTHFDG 178 Query: 299 FDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FDAVL+DAPCS G +R+ P + + IV A QR+L+L +K Sbjct: 179 RIFGEVLPEHFDAVLLDAPCSGEGVVRKDPAAMSHWSPESIVDIAATQRELILSAFHALK 238 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG++++S C+L+ Q++++V + +L P E+ PL++ + ++ A + EG++ + Sbjct: 239 PGGVLIYSTCTLNHQENQDVCRWLLTQFPHACEIEPLDNLFPEAHHAA---TAEGFLHVF 295 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF LR+ Sbjct: 296 PQIYDSE--------GFFIARLRKTA 313 >gi|119775174|ref|YP_927914.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella amazonensis SB2B] gi|146325699|sp|A1S788|RSMF_SHEAM RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|119767674|gb|ABM00245.1| NOL1/NOP2/sun family protein [Shewanella amazonensis SB2B] Length = 467 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 18/253 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS--VLDLCAAPGG 254 G +L +G++++Q+AS+ +P +LD+ +APG Sbjct: 65 WCEDGFWVTVPDDCQPGNLTEHYQGLFYIQEASSMMPPCALFMDKEPRQLLLDVASAPGS 124 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DA 309 KT QL + + + A + S R + L NL R+ + I + D + DA Sbjct: 125 KTTQLAALMHNQGLIIANEYSASRTKALHANLQRMGVANVAITQFDGRVFGAHLYETLDA 184 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 + +DAPCS GT+R+ P L D+I A QR L+ +KPGG++V+S C+L+ Sbjct: 185 IQLDAPCSGEGTVRKDPLSLKNWCPDEIEAIAELQRDLIDSAFQALKPGGVLVYSTCTLN 244 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++++E+V + V LN + AL+ EG++ I P + + Sbjct: 245 RRENEDVCHFLKERYGDAVVFESLNDLF---KGADKALTEEGFLHIWPQIYDSE------ 295 Query: 430 MDGFFAVALRRLI 442 GFF +R+ Sbjct: 296 --GFFVARIRKTA 306 >gi|288942527|ref|YP_003444767.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM 180] gi|288897899|gb|ADC63735.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM 180] Length = 488 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 20/309 (6%) Query: 149 PEWFKERLENFYGK--ERVLAISDACISPLYIDLTVKFDIETWAHKLNA-VMLPTGGIRL 205 P+ + Y + A +++ PL + L + V + Sbjct: 16 PDQIADSWLGRYRDLVDDWDAFAESLGRPLPVALWANPARISVEALTELLVEQGLSPQPI 75 Query: 206 KELPESIVSLPGFAEGVWWV--------QDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + LP ++ P F G W Q+A + +PV L VLD+CAAPGGKTA Sbjct: 76 QGLPNALNLPPAFRAGQQWWYCVGLAHAQEAVSQLPVTLMDLKPGQRVLDMCAAPGGKTA 135 Query: 258 QLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVD 313 Q+ + V A D+S R++ L+ NLDRL + + DA ++ FD +L+D Sbjct: 136 QIAFALDNRGTVVANDISYGRIKALQGNLDRLGVLNVTTTQSDASNWPTAGGQFDRILLD 195 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCSS GTIRR+P +L D + QR LL + + +PGG++++S C+ +++ Sbjct: 196 APCSSEGTIRRNPSLLQRHDPAGSQRLGPRQRALLRKAVQRCRPGGLILYSTCTFAPEEN 255 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMD 431 E VV +L V L ++ D A ++ + P++ ++ + Sbjct: 256 ELVVADILAECEGRVRLRTVD---IPGFDAAPGVTEWLGRTLPPELARCRRLWPHRNDTG 312 Query: 432 GFFAVALRR 440 GFF L + Sbjct: 313 GFFIALLEK 321 >gi|117621518|ref|YP_856786.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562925|gb|ABK39873.1| Sun/nucleolar protein family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 536 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 22/263 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS-- 244 +L+ V G L ES+ + G++++Q+AS+ +PV Sbjct: 120 LGWQLDPVPWCDTGFWLSREDESVPLGNTAEHLSGLFYIQEASSMLPVTALFACEQTRRD 179 Query: 245 --VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 +LD AAPG KT Q+ + + + A + S RL+ L NL R + + D Sbjct: 180 GMLLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAK 239 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 F + FDA+L+DAPCS G++R+ D L + I + A Q+ LL +KP Sbjct: 240 VFGQWLPETFDAILLDAPCSGEGSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKP 299 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L Q+++ V Q +L L + + A +PEG++ + P Sbjct: 300 GGVLVYSTCTLSLQENQAVCQSLLDKFGAAFSFDSLADLFPAA---EQACTPEGYLHVWP 356 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 357 QIFDSE--------GFFVARLRK 371 >gi|145633872|ref|ZP_01789593.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655] gi|144985244|gb|EDJ92087.1| methionyl-tRNA formyltransferase [Haemophilus influenzae 3655] Length = 265 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 33/282 (11%) Query: 176 LYIDLTVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDAS 229 +++ + + + +ET+ L + ++ LP F EG VQD S Sbjct: 1 MWLRVNSQKNALETYRTLLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLS 60 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLH 287 A L N +LD CAAPGGKT ++ + V ALDV RL+++ NL+RL+ Sbjct: 61 AQWAATLLEPKNEEWILDACAAPGGKTTHILELAPQANVIALDVESHRLKRVEENLERLN 120 Query: 288 LYAEDII----EMDAF---DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 A + + D + FD +L+DAPCS+TG IRRHPD+ W R DI + Sbjct: 121 QQAIVVCGDASQPDEWLAEIGKSAVKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQL 180 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 Q+K+L +KP G+++++ CS+ +++ E +Q L + EL+ L + KS Sbjct: 181 VELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAH-ADAELLSLPFSDDKS 239 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P + DGF+ L + Sbjct: 240 AV---------GFQFIPQ--------PNSGDGFYYAKLLKRA 264 >gi|330829687|ref|YP_004392639.1| ribosomal RNA small subunit methyltransferase F [Aeromonas veronii B565] gi|328804823|gb|AEB50022.1| Ribosomal RNA small subunit methyltransferase F [Aeromonas veronii B565] Length = 476 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 121/265 (45%), Gaps = 22/265 (8%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 E +L+ V G L E + + G++++Q+AS+ +PV + + Sbjct: 57 EPLGWQLDPVPWCDTGFWLTRSDETVPLGNTAEHLSGLFYIQEASSMLPVMALFASDKIK 116 Query: 245 V----LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 LD AAPG KT Q+ + + + A + S RL+ L N+ R + + D Sbjct: 117 ADGMLLDAAAAPGSKTTQIAALMNNQGMLVANEFSSSRLKVLSANIQRCGVTNVGMTHFD 176 Query: 298 --AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 F + FDA+L+DAPCS GT+R+ D L + I + A Q+ LL + Sbjct: 177 AKVFGQWLPETFDAILLDAPCSGEGTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHAL 236 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 KPGG++V+S C+L +Q+++ V Q +L + L + + A + EG++ + Sbjct: 237 KPGGVLVYSTCTLSEQENQAVCQSLLDKFGDALSFDSLADLFPHA---EQACTSEGYLHV 293 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF LR+ Sbjct: 294 WPQIFDSE--------GFFVARLRK 310 >gi|257096815|sp|A8GDM6|RSMF_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 478 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 26/272 (9%) Query: 188 TWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L + G ++ E + S G++++Q+AS+ +PV G Sbjct: 60 DYDWRLEPIPWCAEGFWIERGDEELRLGSAAEHLSGLFYIQEASSMLPVSALFAGAEAPS 119 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPG KT Q+ + + + A + S R++ L N+ R + + D Sbjct: 120 RVLDVAAAPGSKTTQIAALMNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD + + + A QR+L+ + PG Sbjct: 180 FGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVTAIADTQRELIDSAFHALAPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+L+ Q+++++V +L + V + PL + AL+ EG++ + P Sbjct: 240 GVMVYSTCTLNAQENQQIVNGLLATYGDAVSIEPLGDLFP---GAKQALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR------LIQP 444 + + GFF LR+ L +P Sbjct: 297 IYDSE--------GFFVARLRKHHSVPPLAKP 320 >gi|121533337|ref|ZP_01665165.1| Fmu (Sun) domain protein [Thermosinus carboxydivorans Nor1] gi|121307896|gb|EAX48810.1| Fmu (Sun) domain protein [Thermosinus carboxydivorans Nor1] Length = 457 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 67/260 (25%), Positives = 104/260 (40%), Gaps = 33/260 (12%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 E + V G + P F G++++Q+ SA +P Q+ V Sbjct: 47 RELLPFAVEPVPWCPDGFYYDDTAVRPAKHPYFYAGLYYIQEPSAMLPAQMLSAQPGERV 106 Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFD 300 LDLCAAPGGK+ Q + + A D+ +R + L NL+R + D Sbjct: 107 LDLCAAPGGKSVQLAGQLARQGLLVANDIHPQRAKALLKNLERCGAVNAVVCNETPDRLA 166 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD +LVDAPCS G R+ PD++ + K A +Q +L + ++PGG Sbjct: 167 RVFTGFFDKILVDAPCSGEGMFRKDPDMVRAWSEQAVTKYAAWQADILRHVPAMLRPGGT 226 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 VV+S C+ +++EE + + L P EG R+ P + Sbjct: 227 VVYSTCTFSPEENEEQIGRFLVGHPDFAL--------------------EGSERLWPHKV 266 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G FA + R Sbjct: 267 RGE--------GHFAAKMTR 278 >gi|312793398|ref|YP_004026321.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180538|gb|ADQ40708.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 455 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 19/307 (6%) Query: 146 SIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200 +PE F +++ ++ + + D + T K +E + K+ + Sbjct: 1 MNLPEEFLSKMKEILKEEFDQFIKVYDFDSYKGFRVNTAKVSVEEFIKKMGIEFEKVPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P + G+ ++Q+ SA PV+ VLDLCAAPGGK+ Q Sbjct: 61 KDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDIKEGEKVLDLCAAPGGKSIQIA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 + + + DV R++ L N++ L L I+ + FD +LVDAP Sbjct: 121 ARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNIVILNNKPKEIAESYGAYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P ++ K QR ++ + +K G +V+S C+ + +++E Sbjct: 181 CSGEGMFRKDPTAAKKWTSNHPEKYVNLQRSIMTEVDELLKVDGEIVYSTCTFEVEENEG 240 Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ L+ V + + I++ + + RI P ++ G F Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAARIYPHRVKGE--------GHF 292 Query: 435 AVALRRL 441 L+++ Sbjct: 293 ICKLKKV 299 >gi|291283017|ref|YP_003499835.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli O55:H7 str. CB9615] gi|290762890|gb|ADD56851.1| Ribosomal RNA small subunit methyltransferase F [Escherichia coli O55:H7 str. CB9615] Length = 506 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 87 YGWTLTPIPWCEEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 146 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 147 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 206 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 207 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSG 266 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + P VE +PL + AL+ EG++ + P Sbjct: 267 GTLVYSTCTLNREENESVCLWLKETYPDAVEFLPLGDLFP---GANKALTEEGFLNVFPQ 323 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 324 IYDCE--------GFFVARLRK 337 >gi|212224781|ref|YP_002308017.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212009738|gb|ACJ17120.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 383 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 S+ L F EG+++ Q + + ++ ++D+ AAPGGKT+ + + + ++ Sbjct: 168 SLSELESFKEGLFYAQSLPSMVVARILEPSEEELIIDMAAAPGGKTSHIAQLMQNRGEII 227 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D SK RL K+ L RL + +I MD+ D +L+DAPC++ G P Sbjct: 228 AIDKSKNRLRKMEEELKRLGVKNVKLIHMDSRKLPELGIEADKILLDAPCTALGI---RP 284 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +R DI +A +QR + I ++ GG++V+S C+L +++E V+ +L Sbjct: 285 KLWESRTPKDIEATARYQRHFINAAIKSLRKGGVLVYSTCTLSYEENEANVKYMLSK--- 341 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + +G R P+ GFF LR++ Sbjct: 342 -----GLKLEEQSLFIGSHGIGLDGVQRFYPN--------RHLTQGFFIAKLRKV 383 >gi|291525122|emb|CBK90709.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium rectale DSM 17629] Length = 462 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 33/260 (12%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 ++T + + + P G++++Q+ SA L + V Sbjct: 51 LKTLKISSDKKVSWADEAYYFDENVRPGKHPYHEMGLYYIQEPSAMSAAALLAPKPGMRV 110 Query: 246 LDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LDLCAAPGGK+ QL + + +++ +R L N++R+ + + D+F Sbjct: 111 LDLCAAPGGKSTQLATYLGDSGLLVSNEINTQRSRILSQNIERMGIKNAIVTNEDSFVLA 170 Query: 303 PKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 F+A+ VDAPCS G R+ P+ + +++ A Q+++L +KPGG Sbjct: 171 SHFPGFFNAIQVDAPCSGEGMFRKLPEAIEQWSMENVAICAARQKEILDNAAVMLKPGGT 230 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+ ++++E+V++ L P + E R P + Sbjct: 231 IVYSTCTFSREENEDVIECFLERHPD--------------------FTLEEMERFWPHKV 270 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + G F L R Sbjct: 271 DGE--------GHFVAKLVR 282 >gi|157370355|ref|YP_001478344.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia proteamaculans 568] gi|157322119|gb|ABV41216.1| putative RNA methylase, NOL1/NOP2/sun family [Serratia proteamaculans 568] Length = 503 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 26/272 (9%) Query: 188 TWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L + G ++ E + S G++++Q+AS+ +PV G Sbjct: 85 DYDWRLEPIPWCAEGFWIERGDEELRLGSAAEHLSGLFYIQEASSMLPVSALFAGAEAPS 144 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPG KT Q+ + + + A + S R++ L N+ R + + D Sbjct: 145 RVLDVAAAPGSKTTQIAALMNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRV 204 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD + + + A QR+L+ + PG Sbjct: 205 FGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVTAIADTQRELIDSAFHALAPG 264 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+L+ Q+++++V +L + V + PL + AL+ EG++ + P Sbjct: 265 GVMVYSTCTLNAQENQQIVNGLLATYGDAVSIEPLGDLFP---GAKQALTAEGFLHVFPQ 321 Query: 419 MLEKIDGVSSGMDGFFAVALRR------LIQP 444 + + GFF LR+ L +P Sbjct: 322 IYDSE--------GFFVARLRKHHSVPPLAKP 345 >gi|313903841|ref|ZP_07837230.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter subterraneus DSM 13965] gi|313466029|gb|EFR61554.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter subterraneus DSM 13965] Length = 487 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 121/302 (40%), Gaps = 17/302 (5%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT--------VKFDIETWAHKLNAVMLPTGGI 203 ER + A P + + ++ +E +L Sbjct: 5 VFERYRTIIDDWEAFQAALARPQPATLRVNRLKADPGALRTRLEERGFRLEPYDWYPDLW 64 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 R+ E P G +++Q+A+A++PV VLDL AAPGGK+ Q+ + Sbjct: 65 RVVEEPFPPALTLEHWLGWFYLQEAAAAVPVLALDPRPGEVVLDLSAAPGGKSTQMAERM 124 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 V A D RRL L NL RL + + D + FD VLVDAPCS+ G Sbjct: 125 GGRGMVVANDPDPRRLAALAHNLQRLGITMAVVTRADGRQFPGGVAFDRVLVDAPCSAEG 184 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 RR + Q LL +G++ +PGG+VV+S C+ +++E VV ++ Sbjct: 185 NARRSARAREGAGRHQRRRLPAVQEALLRRGLALARPGGVVVYSTCTFAPEENEAVVDRI 244 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438 LR + V L PL + ++ R P++ +D G F L Sbjct: 245 LREAEGAVRLEPLPPGLPGTAG----VTAWEGRRFRPEVELCRRLYPHHLDSGGMFVARL 300 Query: 439 RR 440 R+ Sbjct: 301 RK 302 >gi|326791170|ref|YP_004308991.1| Fmu (Sun) domain protein [Clostridium lentocellum DSM 5427] gi|326541934|gb|ADZ83793.1| Fmu (Sun) domain protein [Clostridium lentocellum DSM 5427] Length = 453 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 103/255 (40%), Gaps = 18/255 (7%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + E P + G++++Q+ SA P + VLDLCAAPGG Sbjct: 56 KEVPWCKEGFYYDKEEKPTKHPYYYAGLYYIQEPSAMSPGAYLPIVPGDRVLDLCAAPGG 115 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDA 309 K+ Q + + + D+S R + L NL+ + + FD Sbjct: 116 KSTQIAARMEGKGVLVSNDISASRAKALLKNLENFGARQAIVTSETSEKLASKWPGYFDK 175 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G R++ + + + + Q +L + +KP G++++S C+ Sbjct: 176 ILIDAPCSGEGMFRKNETAVKSWENYGVDYCMRLQETILEDAATMLKPDGMLLYSTCTFS 235 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDG 425 +++E ++ L+ ++VPL + +G +R+ P +E Sbjct: 236 PEENEGMIGAFLKKH-SDFKVVPLLPVGGIQEGKPEWIDAPASLKGALRLWPHHIEGE-- 292 Query: 426 VSSGMDGFFAVALRR 440 G F L+R Sbjct: 293 ------GHFVCLLKR 301 >gi|146312051|ref|YP_001177125.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Enterobacter sp. 638] gi|167012767|sp|A4WBJ4|RSMF_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|145318927|gb|ABP61074.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter sp. 638] Length = 480 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 130/268 (48%), Gaps = 23/268 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L V G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YRWQLTPVPWCAEGFWIEREDEDALPLGSTAEHLSGLFYIQEASSMLPVTALFAEDNQPE 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMGNRGVILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L ++ A QR+L+ ++PG Sbjct: 180 FGAALPESFDAILLDAPCSGEGVVRKDPDALKNWSVASNLEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+L++ ++E V + P VE +PL+S + + + A++PEG++ + P Sbjct: 240 GMLVYSTCTLNRDENESVCLWLKEQYPQAVEFLPLDSLFPSATE---AVTPEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR--LIQP 444 + + GFF +R+ +I+P Sbjct: 297 IFDCE--------GFFVARMRKTAVIEP 316 >gi|253751857|ref|YP_003024998.1| NOL1/NOP2/sun family protein [Streptococcus suis SC84] gi|253753680|ref|YP_003026821.1| NOL1/NOP2/sun family protein [Streptococcus suis P1/7] gi|253755440|ref|YP_003028580.1| NOL1/NOP2/sun family protein [Streptococcus suis BM407] gi|251816146|emb|CAZ51770.1| NOL1/NOP2/sun family protein [Streptococcus suis SC84] gi|251817904|emb|CAZ55674.1| NOL1/NOP2/sun family protein [Streptococcus suis BM407] gi|251819926|emb|CAR46010.1| NOL1/NOP2/sun family protein [Streptococcus suis P1/7] gi|292558427|gb|ADE31428.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus suis GZ1] gi|319758212|gb|ADV70154.1| NOL1/NOP2/sun family protein [Streptococcus suis JS14] Length = 433 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 60/311 (19%), Positives = 118/311 (37%), Gaps = 31/311 (9%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F ++ + G E A ++ E+ +L+ Sbjct: 1 MQLPQDFIDKYNHLLGSE-AQAFFESFEQDPISGFRTNPLKES---QLDFEQPIPNMTWS 56 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 S P G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 57 YYGKVS-GKSPEHVTGLVYSQEPAAQVVGQIAAPKKGMKVLDLAAAPGGKSTHLLSYLEN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R L N++R + D + FD +++DAPCS G Sbjct: 116 TGLLVSNEISNKRARILAENIERFGARNVVVTNESADRLEKVFPGYFDMIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++PD + + A QR++L ++ + P G +++S C+ +++EEVV + Sbjct: 176 MFRKYPDAIQYWSKHYPAQCASLQREILESALNMLAPDGQLIYSTCTWSPEENEEVVTWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR- 439 L + + +P + + I R+ P F R Sbjct: 236 LEQYDLELIDIPKINGMVEGIGYTEVA------RMYPHHFAGEGQ--------FVAKFRF 281 Query: 440 ------RLIQP 444 + ++P Sbjct: 282 LGEASQKKLKP 292 >gi|238924345|ref|YP_002937861.1| NOL1/NOP2/sun family protein [Eubacterium rectale ATCC 33656] gi|238876020|gb|ACR75727.1| NOL1/NOP2/sun family protein [Eubacterium rectale ATCC 33656] Length = 462 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 33/260 (12%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 ++T + + P G++++Q+ SA L + V Sbjct: 51 LKTLKISSEKKVSWANEAYYFDENVRPGKHPYHEMGLYYIQEPSAMSAAALLAPKPGMRV 110 Query: 246 LDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LDLCAAPGGK+ QL + + +++ +R L N++R+ + + D+F Sbjct: 111 LDLCAAPGGKSTQLATYLGDSGLLVSNEINTQRSRILSQNIERMGIKNAIVTNEDSFVLA 170 Query: 303 PKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 F+A+ VDAPCS G R+ P+ + +++ A Q+++L +KPGG Sbjct: 171 SHFPGFFNAIQVDAPCSGEGMFRKLPEAIEQWSMENVAICAARQKEILDNAAVMLKPGGT 230 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+ ++++E+V++ L P + E R P + Sbjct: 231 IVYSTCTFSREENEDVIECFLERHPD--------------------FTLEEMERFWPHKV 270 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + G F L R Sbjct: 271 DGE--------GHFVAKLVR 282 >gi|291000320|ref|XP_002682727.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi] gi|284096355|gb|EFC49983.1| proliferating-cell nucleolar antigen p120 [Naegleria gruberi] Length = 702 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 122/315 (38%), Gaps = 31/315 (9%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVM---- 197 + + + ++ +A P + + +K A L Sbjct: 280 YYGYNSELIDVFASMFSLPELIEFLEANEKPRPLTIRSNILKTRRRELAQNLINRGINLD 339 Query: 198 ----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 G+++ + + + P + G + +Q AS+ +PV N V+D+ AAPG Sbjct: 340 PLDKWSKAGLKIYDANVPVGATPEYLAGHYMLQGASSFLPVMALAPKENEKVIDMAAAPG 399 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFD 308 GKT L + + + A DV+ R + L N+ R+ + D D D Sbjct: 400 GKTTYLSALMKNTGVIFANDVNVDRTKALIANIHRMGCRNCIVANYDGRDMPQILPTKVD 459 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFS 364 VL+DAPC+ G I R P + + DI QR+L+L I V + GG +V+S Sbjct: 460 RVLLDAPCTGLGVISRDPSIKSQKGKKDIELLCKLQRELILAAIDCVDADSETGGYIVYS 519 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPL---NSAYWKSIDMAMALSPEGWIRITPDMLE 421 CS+ ++E VV L+ + + L + K + S + +R P + Sbjct: 520 TCSVSVDENEAVVNYALKKRHVKIVPTGLQFGTPGFIKIGERHFDPSLKLTMRYFPHV-- 577 Query: 422 KIDGVSSGMDGFFAV 436 MDGF+ Sbjct: 578 ------HNMDGFYVC 586 >gi|326391032|ref|ZP_08212580.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus JW 200] gi|325992900|gb|EGD51344.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus JW 200] Length = 460 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 16/256 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ K+R++ L N++R+ + I + + FD +LV Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + QR +L +K GGI+V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQRNILRSVAPLLKKGGILVYSTCTFAPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429 E V++K L P S ++ PE +R+ P + Sbjct: 240 DEGVIKKFLEEHPEFEIEESEISKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRRLIQPK 445 G F LR+ + + Sbjct: 294 --GHFIAKLRKKEEEE 307 >gi|212223865|ref|YP_002307101.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] gi|212008822|gb|ACJ16204.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1] Length = 312 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 11/262 (4%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E + +P +++ +P + G+ + Q+AS+ IP + VL Sbjct: 53 ERLSEDYKLEPIPWVREGFFINVDNLARVPEHSLGLVFGQEASSMIPPVVLDPKPGELVL 112 Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYC 302 D+ AAPG K AQ + + + A D R L NL+R+ + + D + Sbjct: 113 DMAAAPGSKTGQIAQYMENEGCIIANDPKIDRANILIANLNRMGVLNTRVTTRDGAYFGR 172 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD VL+DAPCSS G IR+ L +VK Q++L+L +KPGG++V Sbjct: 173 FENTFDRVLLDAPCSSVGMIRKSWKFLTGWRLRGVVKYMNIQKRLILAAYKALKPGGVLV 232 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C++D ++EEVV +LR + ++ + L + + + +R + Sbjct: 233 YSTCTIDPLENEEVVDYLLRKTDARLDDIDLPVKTSEPVLEWEGRTYSEELR----KTLR 288 Query: 423 IDGVSSGMDGFFAVALRRLIQP 444 I + + FF ++++P Sbjct: 289 IHPNDNDTEAFFIA---KIVKP 307 >gi|255281791|ref|ZP_05346346.1| NOL1/NOP2/sun family protein [Bryantella formatexigens DSM 14469] gi|255267858|gb|EET61063.1| NOL1/NOP2/sun family protein [Bryantella formatexigens DSM 14469] Length = 549 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 18/235 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTA 268 + P + G+++VQ+ SA +P L +LDLCAAPGGK +L + A Sbjct: 142 VTRHPYYYAGLYYVQEPSAMLPAALLEAEPGERILDLCAAPGGKATELGSRLAGEGVLVA 201 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326 D+S R + L NL++ + + FD +LVDAPCS G +RR P Sbjct: 202 NDISASRAKALLKNLEQHGVGNVLVCSEAPQKLQKIYPAYFDRILVDAPCSGEGMLRREP 261 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + A QR+++ + ++PGG +V+S C+ +Q++EE V +L P Sbjct: 262 SMKKAYEAHGPAYYAPLQREIVEAAAAMLRPGGRMVYSTCTFSEQENEETVLALLADHP- 320 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EL + + D+ L+ G +R+ P ++ G FA L +L Sbjct: 321 --ELRLVKTEVPGGEDIPEMLA--GCVRLYPHRVKGE--------GHFAAVLEKL 363 >gi|239623514|ref|ZP_04666545.1| Fmu (Sun) domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239521545|gb|EEQ61411.1| Fmu (Sun) domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 497 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 104/266 (39%), Gaps = 12/266 (4%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 A + + + P G++++Q+ SA +L +L Sbjct: 63 AAQAGLCLGKIPWVKEGFYYDAAKRPGKHPYHEAGLYYIQEPSAMAVTELLDPRPGERIL 122 Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 DLCAAPGGK++ + + + ++ R + L N++R+ + + D+ + Sbjct: 123 DLCAAPGGKSSHIASRLKARGFLLSNEIHPARAKVLSQNMERMGVRNCVVSNEDSGNLAS 182 Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD ++VDAPCS G R+ + + A Q ++L + ++PGG + Sbjct: 183 HFPEFFDRIVVDAPCSGEGMFRKDEAARGQWSEEHVRMCAGRQGQILDNAAAMLRPGGRM 242 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPEGWI------R 414 V+S C+ +++E + L+ +E V + + A G R Sbjct: 243 VYSTCTFAPEENEGAILAFLKRHSGFCLEAVEGYEGFSRGNAGWAAYGGAGLADEPSVDR 302 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + +I + +G F L++ Sbjct: 303 YHLERAFRIMPQNLEGEGHFIAVLKK 328 >gi|225018864|ref|ZP_03708056.1| hypothetical protein CLOSTMETH_02814 [Clostridium methylpentosum DSM 5476] gi|224948334|gb|EEG29543.1| hypothetical protein CLOSTMETH_02814 [Clostridium methylpentosum DSM 5476] Length = 458 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 104/271 (38%), Gaps = 18/271 (6%) Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 L + +P + + P GV++VQ+ SA V Sbjct: 49 TLKCSPERFVSLAPFPLQPVPFCPEGFYVKEDGLGHHPYHHAGVFYVQEPSALSAVTALD 108 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 VLDLCAAPGGK+ Q+ + + + R L N++R+ + + Sbjct: 109 PQPGERVLDLCAAPGGKSTQIAARLAGKGLLVSNEYVSSRANILLSNIERMGIRNAVVTN 168 Query: 296 --MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + FD VLVDAPCS G R+ P + + A QR +L Sbjct: 169 LHPDKLCGRLEGWFDRVLVDAPCSGEGMFRKDPRAVEEWSDEHSKSCAVRQRGILQSAKE 228 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---E 410 V+PGG++V+S C+ ++E VV L +P EL ++ + S +P Sbjct: 229 AVRPGGVLVYSTCTFSLDENEMVVCSFLNDNP-DFELDQVSLSLGTSSRQEWLDTPYDLT 287 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 RI P G +G F LRR Sbjct: 288 KMHRIFPH---------QGGEGHFVARLRRK 309 >gi|91211057|ref|YP_541043.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli UTI89] gi|117623991|ref|YP_852904.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli APEC O1] gi|237705787|ref|ZP_04536268.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp. 3_2_53FAA] gi|91072631|gb|ABE07512.1| hypothetical protein YebU [Escherichia coli UTI89] gi|115513115|gb|ABJ01190.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|226900544|gb|EEH86803.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia sp. 3_2_53FAA] gi|294490935|gb|ADE89691.1| NOL1/NOP2/sun family putative RNA methylase [Escherichia coli IHE3034] gi|307626685|gb|ADN70989.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli UM146] gi|315286546|gb|EFU45981.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli MS 110-3] Length = 481 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 62 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 121 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 122 RVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 181 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 182 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 241 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + VE +PL + AL+ +G++ + P Sbjct: 242 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 298 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 299 IYDCE--------GFFVARLRK 312 >gi|325686144|gb|EGD28195.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 474 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 16/301 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 IP+ FKE+ G+E + ++ + ++ A + G Sbjct: 4 IPDQFKEKFTGLLGQEEAGKLLESL-AEPSKKAYRINSLKKGAVAYPQEEVVPGIPNAYY 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 S P + G+ + QD +A P Q VLDLCAAPGGK+ Q + Sbjct: 63 GEVS-GKDPEWTAGMVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR NL+R + + D+F + FDA+LVDAPCS G Sbjct: 122 LLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ D + +++ A QR++L + + +KPGG +++S C+ ++ E +V +L Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEGIVSWLLD 241 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A + + R P F +L++ Sbjct: 242 EYGFRLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKT 293 Query: 442 I 442 Sbjct: 294 A 294 >gi|167036928|ref|YP_001664506.1| NOL1/NOP2/sun family RNA methylase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115347|ref|YP_004185506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855762|gb|ABY94170.1| putative RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928438|gb|ADV79123.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 460 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 16/256 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + E + G++++Q+ +A V++ +LD+ AAPGGKT Sbjct: 60 PWCPTGFYYDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 I + A ++ K+R++ L N++R+ + I + + FD +LV Sbjct: 120 HIATKIGDEGIIVANEIDKKRIKALVENVERMGIRNIVITNETPEKLATAFEGYFDKILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P ++++ + QR +L +K GGI+V+S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPTARKIWSLNNVMSCSITQRNILRSVAPLLKKGGILVYSTCTFAPEE 239 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSG 429 E V++K L P S ++ PE +R+ P + Sbjct: 240 DEGVIKKFLEEHPEFEIEESEISKFFDRGHPEWVEGPEDLKKCMRLWPHKVRGE------ 293 Query: 430 MDGFFAVALRRLIQPK 445 G F LR+ + + Sbjct: 294 --GHFIAKLRKKEEEE 307 >gi|116514165|ref|YP_813071.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093480|gb|ABJ58633.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 474 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 122/301 (40%), Gaps = 16/301 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 IP+ FKE+ + G+E + D+ + ++ A G Sbjct: 4 IPDQFKEKFTSLLGQEEAGKLLDSL-AEPSKKAYRINSLKEGAVVYPQEEAVPGIPNAYY 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 S P + G+ + QD +A P Q VLDLCAAPGGK+ Q + Sbjct: 63 GEVS-GKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR NL+R + + D+F + FDA+LVDAPCS G Sbjct: 122 LLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ D + +++ A QR++L + + +KPGG +++S C+ ++ EE+V +L Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A + + R P F +L++ Sbjct: 242 EYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293 Query: 442 I 442 Sbjct: 294 A 294 >gi|295095564|emb|CBK84654.1| 16S rRNA m(5)C-1407 methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 465 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 126/262 (48%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + +L V G ++ E + S G++++Q+AS+ +PV Sbjct: 45 YGWQLTPVPWCEEGFWIERDDEESLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNQPE 104 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R ++ + D Sbjct: 105 RVMDVAAAPGSKTTQIAARMNNRGAILANEFSASRVKVLHANISRCGIHNVALTHFDGRV 164 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + ++ A QR+L+ ++PG Sbjct: 165 FGAALPEAFDAILLDAPCSGEGVVRKDPDALKNWSVESNLEIAATQRELIDSAFHALRPG 224 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++ ++E+V + + VE +PL++ + + A +PEG++ + P Sbjct: 225 GTLVYSTCTLNRDENEDVCLWLKQRYADAVEFLPLDTLF---DSASHAATPEGFLHVFPQ 281 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 282 IYDCE--------GFFVARLRK 295 >gi|218558698|ref|YP_002391611.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Escherichia coli S88] gi|146325691|sp|A1AC00|RSMF_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|146325694|sp|Q1RAV2|RSMF_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|226725333|sp|B7MBP2|RSMF_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218365467|emb|CAR03194.1| putative RNA AdoMet-dependent methyltransferase [Escherichia coli S88] gi|323952336|gb|EGB48209.1| NOL1/NOP2/sun family protein [Escherichia coli H252] Length = 479 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + VE +PL + AL+ +G++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|156540019|ref|XP_001600726.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 691 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 103/274 (37%), Gaps = 46/274 (16%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L+ + I F Q+ + +P + VLD+CAA Sbjct: 132 WQLQLTRKDIRRSEAFFRLHNFLIAETNSGNISRQEVVSMVPPLVLDVKPWHKVLDMCAA 191 Query: 252 PGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 PG KTAQLI V A D+ R L RL+ I D+ Sbjct: 192 PGSKTAQLIEMIHADEKIPLPEGFVIANDLDNNRCYMLVHQAKRLNSPNILITNHDSSVM 251 Query: 302 CPKK-----------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 FD +L D PCS GT+R++PD+ + Q ++ + Sbjct: 252 PNFTVTQADGSKGTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQYRIAKR 311 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 G+ + GG +V+S CSL+ ++E V+ ++L + V LV + + + Sbjct: 312 GVELLAVGGKMVYSTCSLNPIENEAVLHRLLSETGDSVRLVDCKDSVPGLV-----YNHG 366 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 ++RI P + GFF L +L +P Sbjct: 367 NYMRILPHHQD--------TGGFFVAVLEKL-KP 391 >gi|229823683|ref|ZP_04449752.1| hypothetical protein GCWU000282_00984 [Catonella morbi ATCC 51271] gi|229786920|gb|EEP23034.1| hypothetical protein GCWU000282_00984 [Catonella morbi ATCC 51271] Length = 443 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 109/299 (36%), Gaps = 20/299 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P F+ + G E A D+ V + + + G Sbjct: 1 MTFPAGFQAKYLALLGPEEGQAFLDSFKLEAESGFRVNPLKASQSALPESAQPMPGTPWG 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 + S G+ + Q+ +A + Q L VLDL AAPGGK+ + + Sbjct: 61 YYGKVA-GSSTAHVTGLVYSQEPAAQMVGQAAEPQPGLKVLDLAAAPGGKSTHLLSYLDN 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++ +R + L NL+R FD +++DAPCS G Sbjct: 120 QGLLVANEIHPKRSKILAENLERFGARNVVATNESPERLAQVFPAYFDLIVLDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ + + + + A QR++L QG+ +KPGG +V+S C+ +++E++V + Sbjct: 180 MFRKQAEAMDYWTPEYPSQCAALQREILEQGLLMLKPGGTLVYSTCTWAPEENEDIVAWL 239 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + VP + + R+ P F R Sbjct: 240 LEHYPLTLLEVPKLNGMVPGLSYPETA------RMYPQHFRGEGQ--------FVAKFR 284 >gi|323956465|gb|EGB52207.1| NOL1/NOP2/sun family protein [Escherichia coli H263] Length = 479 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDSEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNKGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++ G Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L+++++E V + + VE +PL + AL+ +G++ + P Sbjct: 240 GTLVYSTCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP---GANKALTEDGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|313123810|ref|YP_004034069.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280373|gb|ADQ61092.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 474 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 16/301 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 IP+ FKE+ G+E + ++ + ++ A + G Sbjct: 4 IPDQFKEKFTGLLGQEEAGKLLESL-AEPSKKAYRINSLKKGAVAYPQEEVVPGIPNAYY 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 S P + G+ + QD +A P Q VLDLCAAPGGK+ Q + Sbjct: 63 GEVS-GKDPEWTAGMVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR NL+R + + D+F + FDA+LVDAPCS G Sbjct: 122 LLVANEISPSRAKILRENLERWGVANAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ D + +++ A QR++L + + +KPGG +++S C+ ++ EE+V +L Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A + + R P F +L++ Sbjct: 242 EYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293 Query: 442 I 442 Sbjct: 294 A 294 >gi|254173359|ref|ZP_04880032.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing RNA-binding PUA domain [Thermococcus sp. AM4] gi|214032768|gb|EEB73597.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, containing RNA-binding PUA domain [Thermococcus sp. AM4] Length = 389 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L F EG+++ Q + + + ++D+ AAPGGKT+ + + ++ Sbjct: 174 SLSELESFKEGLFYAQSLPSMVVAHVLEPSEEELIIDMAAAPGGKTSHIAQLLQNRGEII 233 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D S+ RL K+ L RL + +I MDA D +L+DAPC++ G P Sbjct: 234 AIDKSRNRLRKMEEELKRLGVKNVKLIRMDARKLPELGLQADKILLDAPCTALGI---RP 290 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +R DI+ +A +QR + I ++PGG++V+S C+L +++E V+ +L Sbjct: 291 KLWESRTPRDIIATARYQRAFIWAAIKSLRPGGVLVYSTCTLSYEENEANVKFMLEK--- 347 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + L E R P+ GFF LR++ Sbjct: 348 -----GLKLEEQAVFIGSEGLGIEKVQRFYPN--------RHLTQGFFIARLRKV 389 >gi|227892528|ref|ZP_04010333.1| tRNA/rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227865649|gb|EEJ73070.1| tRNA/rRNA methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 459 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 115/301 (38%), Gaps = 17/301 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P FKE+ G++ + A V + Sbjct: 4 LPNSFKEKYIELLGEKTADQLFKAMNQDSKKAFRVNTLKNQVKISYSLAKPVPEINHAYY 63 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 S P + G + QD +A P + G VLDLCAAPGGKT + + + Sbjct: 64 GEIS-GEDPEWVAGYVYSQDPAAMFPAAISGVKPGDRVLDLCAAPGGKTTALGEQLKNKG 122 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR N++R + II P FD +LVDAPCS G Sbjct: 123 LLVANEISSTRAKILRENIERWGISNALIINESPEKLTPVFPDYFDIILVDAPCSGEGMF 182 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++P+ + D ++ Q +L + + +KPGG +V+S C+ ++ E++V+ ++ Sbjct: 183 RKNPEAIDYWSQDYVLVCQKRQETILNEAVKMLKPGGRLVYSTCTFSPEEDEKIVEWLIN 242 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + + + A + +R P F L+ Sbjct: 243 EYGFSILDTHIKNDHISVGRPKWANDDQNLKKTLRFWPQDGIGEGQ--------FVAVLQ 294 Query: 440 R 440 + Sbjct: 295 K 295 >gi|310819947|ref|YP_003952305.1| methyltransferase [Stigmatella aurantiaca DW4/3-1] gi|309393019|gb|ADO70478.1| Methyltransferase, RsmB/NOP family [Stigmatella aurantiaca DW4/3-1] Length = 322 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 124/311 (39%), Gaps = 32/311 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVM-- 197 A + +P+W + +G E P I L V E A +L + Sbjct: 29 ALRASLPDWLAHHFAHEWGPE-AEDFCAHLNVPGPITLRVNRLRISREDLASRLRSEGVQ 87 Query: 198 -----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + ++ ++ L EG++ VQD + + L +VLDLCA Sbjct: 88 TRPGLWSPWALHIEGERPNLYGLKALQEGLFEVQDEGSQLLGLLVEARPGETVLDLCAGA 147 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 GGKT Q + + + A D RL++L R L ++ D Sbjct: 148 GGKTLQLGAAMENQGPLLAYDPDAGRLDRLLQRCSRAGLSQVQVLRA----PPGGLSVDR 203 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VLVDAPCS G++RR PD+ + + + + QR+LL + V+PGG +V++ C+++ Sbjct: 204 VLVDAPCSELGSLRRGPDLRFLKAPAVLEEFVPLQRELLALAGAQVRPGGRLVYATCTVN 263 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++E V + LR P P P+ ++ D G Sbjct: 264 RAENQERVAEFLRQRPDFRLTRP-----------GAGWLPDACLQ---DGFFLCAPHRQG 309 Query: 430 MDGFFAVALRR 440 D FFA L R Sbjct: 310 TDAFFAAVLER 320 >gi|83596072|gb|ABC25429.1| proliferating-cell nucleolar antigen [uncultured marine bacterium Ant4D5] Length = 511 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 15/249 (6%) Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 ++++ P +I G+ ++Q AS + G VLD+C+APGGKT L Sbjct: 80 PSFHQVEQAPRAISQTLEHWLGLIYIQQASTGVAAPEVGVSPGQRVLDMCSAPGGKTTHL 139 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 + + A ++S+ R+ L N+ RL ++ D ++ LFD VL+DAPC Sbjct: 140 AELMGDRGCLVAGEISEPRIRGLLGNVYRLGHPNILVVAGDGREFPEGALFDHVLLDAPC 199 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GT+RR + + + QR LL + + +PGG +++ C+ +++E V Sbjct: 200 SGEGTLRRSGGQAPNQSSSFLGYVTAAQRSLLEKAVRLTRPGGTILYVTCTFSPEENEAV 259 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 V + L PI +E + L + + + EG RI P + G Sbjct: 260 VSEALGRLPIELEPLELPVPHARGVTSWDGKKFDPRVEGAARIYPHHFDSG--------G 311 Query: 433 FFAVALRRL 441 F LRRL Sbjct: 312 LFLARLRRL 320 >gi|261208200|ref|ZP_05922873.1| sun family protein [Enterococcus faecium TC 6] gi|289566584|ref|ZP_06447005.1| fmu, rRNA SAM-dependent methyltransferase:Nop2p [Enterococcus faecium D344SRF] gi|294615827|ref|ZP_06695670.1| Fmu [Enterococcus faecium E1636] gi|260077457|gb|EEW65175.1| sun family protein [Enterococcus faecium TC 6] gi|289161629|gb|EFD09508.1| fmu, rRNA SAM-dependent methyltransferase:Nop2p [Enterococcus faecium D344SRF] gi|291591317|gb|EFF22983.1| Fmu [Enterococcus faecium E1636] Length = 456 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 18/254 (7%) Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 +L G +S + G+ + Q+ SA I VLDLCA Sbjct: 59 EELQPAPYSNEGFIGTVNGKSFLHQAGYE----YSQEPSAMIVGTAAAAKPGEKVLDLCA 114 Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-- 305 APGGK+ Q + + ++ +R + L N++R + + + P Sbjct: 115 APGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG 174 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD ++VDAPCS G R+ P+ + + + Q+++L I +K G +++S Sbjct: 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST 234 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-DMAMALSPEGWIRITPDMLEKID 424 C+ +++EE++ ++ + P+ +E +PL + + E IRI P + Sbjct: 235 CTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE- 293 Query: 425 GVSSGMDGFFAVAL 438 G F L Sbjct: 294 -------GHFVAKL 300 >gi|325290674|ref|YP_004266855.1| RNA methylase, NOL1/NOP2/sun family [Syntrophobotulus glycolicus DSM 8271] gi|324966075|gb|ADY56854.1| RNA methylase, NOL1/NOP2/sun family [Syntrophobotulus glycolicus DSM 8271] Length = 520 Score = 136 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 100/252 (39%), Gaps = 19/252 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + P GV+++Q+ SA VLDL AAPGGK+ Sbjct: 64 PWCPEGFYYAYQDYPGKHPYHQAGVYYIQEPSAMAVAAYLDPRPGDCVLDLAAAPGGKST 123 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q+ + + ++ ++R L NL+R + + F +L+ Sbjct: 124 QIASSLQGQGLLWSNEIDRKRSRILLENLERWGTARMIVSCETPENLSQALPGFFHKILL 183 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P L ++ A Q+K+L S +K GG +V+S C+ ++ Sbjct: 184 DAPCSGEGMFRKDPGALRHWSVQHVLSCAFRQQKILESAASLLKEGGTLVYSTCTFSPEE 243 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +E + L + P L PL + ++ A+ G IR+ P ++ G Sbjct: 244 NEYCIINFLNNHP-DFGLEPLPKLHPDFVESALLP---GTIRLYPHRVDGE--------G 291 Query: 433 FFAVALRRLIQP 444 F L R +P Sbjct: 292 HFIARLMR--KP 301 >gi|115374634|ref|ZP_01461913.1| NOL1/NOP2/sun family protein [Stigmatella aurantiaca DW4/3-1] gi|115368400|gb|EAU67356.1| NOL1/NOP2/sun family protein [Stigmatella aurantiaca DW4/3-1] Length = 341 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 124/311 (39%), Gaps = 32/311 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVM-- 197 A + +P+W + +G E P I L V E A +L + Sbjct: 48 ALRASLPDWLAHHFAHEWGPE-AEDFCAHLNVPGPITLRVNRLRISREDLASRLRSEGVQ 106 Query: 198 -----LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + ++ ++ L EG++ VQD + + L +VLDLCA Sbjct: 107 TRPGLWSPWALHIEGERPNLYGLKALQEGLFEVQDEGSQLLGLLVEARPGETVLDLCAGA 166 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 GGKT Q + + + A D RL++L R L ++ D Sbjct: 167 GGKTLQLGAAMENQGPLLAYDPDAGRLDRLLQRCSRAGLSQVQVLRA----PPGGLSVDR 222 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VLVDAPCS G++RR PD+ + + + + QR+LL + V+PGG +V++ C+++ Sbjct: 223 VLVDAPCSELGSLRRGPDLRFLKAPAVLEEFVPLQRELLALAGAQVRPGGRLVYATCTVN 282 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++E V + LR P P P+ ++ D G Sbjct: 283 RAENQERVAEFLRQRPDFRLTRP-----------GAGWLPDACLQ---DGFFLCAPHRQG 328 Query: 430 MDGFFAVALRR 440 D FFA L R Sbjct: 329 TDAFFAAVLER 339 >gi|293552933|ref|ZP_06673588.1| Fmu [Enterococcus faecium E1039] gi|291602909|gb|EFF33106.1| Fmu [Enterococcus faecium E1039] Length = 456 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I VLDLCAAPGGK+ Q + + ++ + Sbjct: 82 HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + + E IRI P + G F L Sbjct: 262 LTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE--------GHFVAKL 300 >gi|69245242|ref|ZP_00603320.1| Nop2p [Enterococcus faecium DO] gi|257880127|ref|ZP_05659780.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,230,933] gi|257882359|ref|ZP_05662012.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,502] gi|257885556|ref|ZP_05665209.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,501] gi|257891218|ref|ZP_05670871.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,410] gi|257894030|ref|ZP_05673683.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,408] gi|258614538|ref|ZP_05712308.1| RNA methylase [Enterococcus faecium DO] gi|260560264|ref|ZP_05832440.1| NOL1/NOP2/sun family protein [Enterococcus faecium C68] gi|293560642|ref|ZP_06677129.1| Fmu [Enterococcus faecium E1162] gi|293570164|ref|ZP_06681242.1| Fmu [Enterococcus faecium E1071] gi|294617815|ref|ZP_06697427.1| Fmu [Enterococcus faecium E1679] gi|294621159|ref|ZP_06700346.1| Fmu [Enterococcus faecium U0317] gi|314938789|ref|ZP_07846062.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a04] gi|314941555|ref|ZP_07848441.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133C] gi|314947610|ref|ZP_07851019.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0082] gi|314951360|ref|ZP_07854413.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133A] gi|314993106|ref|ZP_07858493.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133B] gi|314996757|ref|ZP_07861772.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a01] gi|68195917|gb|EAN10351.1| Nop2p [Enterococcus faecium DO] gi|257814355|gb|EEV43113.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,230,933] gi|257818017|gb|EEV45345.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,502] gi|257821412|gb|EEV48542.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,501] gi|257827578|gb|EEV54204.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,410] gi|257830409|gb|EEV57016.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,231,408] gi|260073609|gb|EEW61935.1| NOL1/NOP2/sun family protein [Enterococcus faecium C68] gi|291587313|gb|EFF19199.1| Fmu [Enterococcus faecium E1071] gi|291595926|gb|EFF27207.1| Fmu [Enterococcus faecium E1679] gi|291599275|gb|EFF30305.1| Fmu [Enterococcus faecium U0317] gi|291605393|gb|EFF34840.1| Fmu [Enterococcus faecium E1162] gi|298570361|gb|ADI87521.1| methyltransferase [Enterococcus faecium] gi|313589107|gb|EFR67952.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a01] gi|313592386|gb|EFR71231.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133B] gi|313596466|gb|EFR75311.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133A] gi|313599643|gb|EFR78486.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133C] gi|313641898|gb|EFS06478.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0133a04] gi|313645851|gb|EFS10431.1| NOL1/NOP2/sun family protein [Enterococcus faecium TX0082] Length = 456 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I VLDLCAAPGGK+ Q + + ++ + Sbjct: 82 HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + + E IRI P + G F L Sbjct: 262 LTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE--------GHFVAKL 300 >gi|223984485|ref|ZP_03634618.1| hypothetical protein HOLDEFILI_01912 [Holdemania filiformis DSM 12042] gi|223963556|gb|EEF67935.1| hypothetical protein HOLDEFILI_01912 [Holdemania filiformis DSM 12042] Length = 443 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 16/260 (6%) Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 L+ G L + + +G++++Q+ SAS V + VLDLCA Sbjct: 50 ASLSPSPFAREGFVLTGSETGLGNHIYHRQGLFYMQEPSASSAVTILDPQPGDWVLDLCA 109 Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KK 305 APGGK+ Q I + A ++ R L NL+RL + I CP Sbjct: 110 APGGKSTQIAARIGQSGFLIANEIDGGRARVLMSNLERLGVSEAMITHASPERLCPQLGG 169 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 D VLVDAPCS G ++ L + + Q+K+L + +K GI+V+S Sbjct: 170 WMDKVLVDAPCSGEGMFKKEDRALADWSVEHVRACGQRQQKILESAVFTLKEQGILVYST 229 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+ +++E+V+ + LR P +EL+ + + + RI P Sbjct: 230 CTYAPEENEQVIDQFLRKHP-EMELIDCGVDFGRPGLSTGLVDGAKVRRIFP-------- 280 Query: 426 VSSGMDGFFAVALRRL-IQP 444 +G F LR+ QP Sbjct: 281 -MDQGEGHFVAKLRKTAAQP 299 >gi|88859583|ref|ZP_01134223.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2] gi|88818600|gb|EAR28415.1| hypothetical protein PTD2_21407 [Pseudoalteromonas tunicata D2] Length = 527 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 121/255 (47%), Gaps = 19/255 (7%) Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL---DLCA 250 + SI + G ++Q+AS+ +PV N+L+ D+ A Sbjct: 116 WCEEGFWYQRPQAQQNLSIGNTDIHLSGAIYIQEASSMLPVFALQHQNDLTDCILLDMAA 175 Query: 251 APGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KK 305 APG KT+Q + + + A + S RL+ L N+ RL + + DA + P ++ Sbjct: 176 APGSKTSQIAAQMKNTGVLVANEFSSSRLKSLSANMQRLGIANVALSHFDAAVFGPYMEQ 235 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 F +L+DAPCS GT+R+ PD L + + A Q++L+ +K GG +V+S Sbjct: 236 SFSHILLDAPCSGEGTVRKDPDALKNWSIESNQQIAQVQKQLIESAFYALKTGGTLVYST 295 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+L +++EV Q +L + +E+V L+ ++ D A + EG++ I P + + Sbjct: 296 CTLTPLENQEVCQYLLDTFAGQIEVVKLDDLFF---DAKRAATSEGYLHIWPQLYD---- 348 Query: 426 VSSGMDGFFAVALRR 440 +GFF ++ Sbjct: 349 ----TEGFFVAKFKK 359 >gi|146325689|sp|A0KKI5|RSMF_AERHH RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 475 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 22/263 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS-- 244 +L+ V G L ES+ + G++++Q+AS+ +PV Sbjct: 59 LGWQLDPVPWCDTGFWLSREDESVPLGNTAEHLSGLFYIQEASSMLPVTALFACEQTRRD 118 Query: 245 --VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 +LD AAPG KT Q+ + + + A + S RL+ L NL R + + D Sbjct: 119 GMLLDAAAAPGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANLQRCGVTNVGMTHFDAK 178 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 F + FDA+L+DAPCS G++R+ D L + I + A Q+ LL +KP Sbjct: 179 VFGQWLPETFDAILLDAPCSGEGSVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKP 238 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L Q+++ V Q +L L + + A +PEG++ + P Sbjct: 239 GGVLVYSTCTLSLQENQAVCQSLLDKFGAAFSFDSLADLFPAA---EQACTPEGYLHVWP 295 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 296 QIFDSE--------GFFVARLRK 310 >gi|282601023|ref|ZP_05980466.2| NOL1/NOP2/sun family protein [Subdoligranulum variabile DSM 15176] gi|282570369|gb|EFB75904.1| NOL1/NOP2/sun family protein [Subdoligranulum variabile DSM 15176] Length = 465 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 117/325 (36%), Gaps = 25/325 (7%) Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + L + + A + E L + E I+ + L + Sbjct: 1 MACLCKGGYKMEFPADFAARERALLGDRFEELYRYATPEPARGITVNALRCAPDWLAARA 60 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D A T P GV++ Q+ SAS P L + Sbjct: 61 DFSVAASPFCPSAFTTAPDW------RPGRHPWHHAGVFYAQEPSASAPAALLDVQPGML 114 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD- 300 V DLCAAPGGKT+QL + A + R E LR NL+R+ + + D Sbjct: 115 VADLCAAPGGKTSQLAAALQGQGILVANEFVAARAEILRQNLERMGVTNALVTNEDTARL 174 Query: 301 -YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD VLVDAPCS G R+ + + A ++L + + PGG Sbjct: 175 AAAWPGRFDRVLVDAPCSGEGMFRKEAAASAQHNDALVTHCAALGAEILENAAALLAPGG 234 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS----AYWKSIDMAMALSPEGWIRI 415 ++V+S C+ Q+ E + L+ P LV L+ ++ + E RI Sbjct: 235 VLVYSTCTFAPQEDEAQIASFLQRHP-EFSLVDLSDCGFGRPGEANRAPEGFAAERCRRI 293 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P + G +G F L++ Sbjct: 294 WP---------ADGGEGHFMAKLQK 309 >gi|161507630|ref|YP_001577584.1| putative nucleolar protein [Lactobacillus helveticus DPC 4571] gi|160348619|gb|ABX27293.1| putative nucleolar protein [Lactobacillus helveticus DPC 4571] Length = 460 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 122/305 (40%), Gaps = 25/305 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P FKE+ + G E A I + + A+ LN + Sbjct: 4 LPVEFKEKYQKLLGDEEATEFFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 E+ P + G + QD +A P L G VLDLCAAPGGKT + + + Sbjct: 64 GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 + A ++S R + LR N++R + I P FD +LVDAPCS G Sbjct: 121 EGLLVANEISGTRAKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+ +L + + +KP G +++S C+ ++ E++V + Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + + D L+ IR P F Sbjct: 241 VNEHDFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FV 290 Query: 436 VALRR 440 L++ Sbjct: 291 AVLQK 295 >gi|313649129|gb|EFS13563.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri 2a str. 2457T] gi|332762898|gb|EGJ93152.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri K-671] gi|333018339|gb|EGK37638.1| NOL1/NOP2/sun family RNA methylase domain protein [Shigella flexneri K-304] Length = 421 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDA 298 V+D+ AAPG KT Q + + + A + S ++ L N+ R + + Sbjct: 120 RVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHFGGRV 179 Query: 299 FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 F ++FDA+L+DAPCS G +R+ PD L + + A QR+L+ ++PG Sbjct: 180 FGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S +L+++++E V + + + P VE +PL + AL+ EG++ + P Sbjct: 240 GTLVYSTYTLNREENEAVCRWLKETYPDEVEFLPLGDLFP---GANKALTEEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDCE--------GFFVARLRK 310 >gi|220919337|ref|YP_002494641.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219957191|gb|ACL67575.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 410 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 88/438 (20%), Positives = 145/438 (33%), Gaps = 61/438 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 L+ V+ ++ A L + + V + + R+ A L L Sbjct: 20 LAEVLAGGA-AERVVTRALR--ARPALDAQGRAAVAEAIFGVGLWRRRLRAQLGDPLAPP 76 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 L+ L + A+ + + Sbjct: 77 ALLLAALLRDL----------------------------GRREAGVAEALAGVPAGALPP 108 Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHK 192 A +P W LE G E + C+ ++ + A + Sbjct: 109 PRPPPAARADRFSLPGWLDAELEAAAGPEADALAAALCLPGPVALRANRLRIEPAALAAR 168 Query: 193 LNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L A + T L ++ L + EG+ VQD + + G +V Sbjct: 169 LGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQVLGDAVGARAGEAV 228 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT A + +V A+D RL +LR + Sbjct: 229 LDACAGAGGKTLLLAAAVGPAGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHG--AAAP 286 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + D LVDAPCS G +RR PD+ W D + Q ++L + + V+PGG +V Sbjct: 287 AELRVDRALVDAPCSELGALRRGPDLRWRLDPAAFERLPALQARILERAAARVRPGGRLV 346 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ C+ + + E+V + + P + P A L+ +G++R P Sbjct: 347 YATCTFRRAEDEDVAEAFEAAHPEFARVAPDAP--------ASTLTKDGFLRTWPH---- 394 Query: 423 IDGVSSGMDGFFAVALRR 440 G D FFA A R Sbjct: 395 ----RDGTDAFFAAAWVR 408 >gi|254251085|ref|ZP_04944403.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158] gi|124893694|gb|EAY67574.1| tRNA and rRNA cytosine-C5-methylase [Burkholderia dolosa AUO158] Length = 366 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 76/344 (22%), Positives = 127/344 (36%), Gaps = 21/344 (6%) Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 A + LR + W+ + +++ + Sbjct: 33 PPHAANARSRREWSTRCCVVFLRERDAIVAAMQDDPVARWNYRAWWIDAVKHAWPDAWQA 92 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLN-------AVMLPTGGIRLKELPESIVSLPGFA 219 ++ + L V + L+ + +PGFA Sbjct: 93 ILAAGERQGP-LTLRVNARRTSVDAYLDTLHASGIEAAAIGRHAVRLASALPVDRIPGFA 151 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-SGAKVTALDVSKRRLEK 278 +G+ VQDA A + + + + VLD CAAPGGKT ++ + A+V AL+ R + Sbjct: 152 DGIVSVQDAGAQLAAEWLDVRDGMRVLDACAAPGGKTGHILELADAEVVALESDANRAAR 211 Query: 279 LRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + NL RL L AE + + FD +L D PCS++G +RRHPD+ W R D Sbjct: 212 IGENLARLSLDAEVRVGDAGAPDTWYDGRPFDRILADVPCSASGIVRRHPDIRWLRRATD 271 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I QR++L VKPGG +++ CS+ ++ E + + V L Sbjct: 272 IPALVAEQRRILSALWPLVKPGGELLYVTCSIFPEEGESQARWFEAACEDAVRLDAPGQL 331 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A + G ++ DGFF ++ Sbjct: 332 LPSAAPGAAHRA----------ATTGASGPNTDHDGFFYARFQK 365 >gi|325125855|gb|ADY85185.1| Putative nucleolar protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 474 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 71/301 (23%), Positives = 121/301 (40%), Gaps = 16/301 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 IP+ FKE+ G+E + D+ + ++ A G Sbjct: 4 IPDQFKEKFTGLLGQEEAGKLLDSL-AEPSKKAYRINSLKEGAVVYPQEEAVPGIPNAYY 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 S P + G+ + QD +A P Q VLDLCAAPGGK+ Q + Sbjct: 63 GEVS-GKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR NL+R + + D+F + FDA+LVDAPCS G Sbjct: 122 LLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ D + +++ A QR++L + + +KPGG +++S C+ ++ EE+V +L Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + + R P F +L++ Sbjct: 242 EYGFKLLPIAAEKSAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293 Query: 442 I 442 Sbjct: 294 A 294 >gi|85703240|ref|ZP_01034344.1| NOL1/NOP2/sun family protein [Roseovarius sp. 217] gi|85672168|gb|EAQ27025.1| NOL1/NOP2/sun family protein [Roseovarius sp. 217] Length = 383 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 79/451 (17%), Positives = 141/451 (31%), Gaps = 81/451 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L + L + + +D+ +R V LR Sbjct: 1 MTPG--ARVAAAIEVLDRI-CAGEPAEKALTNWARGARYAG--SKDRAALRDHVFSVLRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + + + + Sbjct: 56 W-------QSCAARGGGETGR----ALMLGA--LRDQGIDP----------------DDL 86 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YI 178 F ++ E++ A + +PEW ER + G + A + Sbjct: 87 FTGDGHAPEPLTEAERVLGEPDAAAMRDLPEWLWERFQASLGADAEAAARALRTRAPIML 146 Query: 179 DLTV-KFDIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + + + + +L + + + E I ++EG +QD S+ Sbjct: 147 RVNLRRAARDEIIARLLDEGIVARPVGIAQSALHVIEGERRIAGSQCYSEGWIELQDGSS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQ-LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + VLD CA GGK A A D + R+ L R + Sbjct: 207 QAAMDAVEVPEGTRVLDYCAGGGGKVLALAARIEAAFFAHDAAPSRMRDLPARAARAGVK 266 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + P+ FD VL DAPCS +GT RR P+ W D + + Q ++L Sbjct: 267 VRCV-------DRPEGRFDLVLCDAPCSGSGTWRRTPEAKWALTPDRLTELTEIQAQILA 319 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V GG +V++ CS+ ++++ +++ ++P + Sbjct: 320 DAAPLVTVGGQLVYATCSVLNEENQFIIESYSSNNPGWSLV------------------- 360 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P +S DGFF LRR Sbjct: 361 --GMQQWP--------ISDEGDGFFLAQLRR 381 >gi|257899800|ref|ZP_05679453.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com15] gi|257837712|gb|EEV62786.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com15] Length = 456 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I + VLDLCAAPGGK+ Q + + + ++ + Sbjct: 82 HQAGYEYSQEPSAMIVGTVAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L+ + + +RI P + G F L Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300 >gi|320103867|ref|YP_004179458.1| Fmu (Sun) domain-containing protein [Isosphaera pallida ATCC 43644] gi|319751149|gb|ADV62909.1| Fmu (Sun) domain protein [Isosphaera pallida ATCC 43644] Length = 489 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 88/457 (19%), Positives = 144/457 (31%), Gaps = 54/457 (11%) Query: 9 LVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID-- 64 V++ +L+ + + L L L + + V R+ I Sbjct: 62 EVAAEVLAHLEERGPAGRLDQALAAALR--PRHQLGRAGRRFAAEAVMALARWQGWISPK 119 Query: 65 ------AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 A L + +++ R D D + A R + + Sbjct: 120 RVPDLTARLLLAWLLDADHLPPAVRVWARSLGY-----DPHDLVPLGDAPSWPARSEAIK 174 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N+ + + R E K L + I Sbjct: 175 RARPFQNAHVAADPWRLVPDWFRRK--------VVEPPGEHGEKAAWLELIQGIQKRPSI 226 Query: 179 DLTVKFDI-ETWAHKLNAVMLPTGGIRLKELPESIV------SLPGFAEGVWWVQDASAS 231 + + E +L A L R + P F G + VQD + Sbjct: 227 WIRTQGGPPEPILSELRARGLAPWIHRRLLTAARLGPDADTPHDPLFQAGRFEVQDLGSQ 286 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + D CA GGKT L + A D RL++L R Sbjct: 287 AIGWVAAPKPGQRWWDACAGAGGKTLHLADLTRGKGLIVATDHHAGRLKELTRRQRRAGF 346 Query: 289 YAEDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 +E D A + P FD VL+DAPC++ GT RR+P+ W I + QR Sbjct: 347 SHIRPLEYDLVTAPEPPPPGQFDGVLIDAPCTAMGTWRRNPEARWRTPVAAIEELGHKQR 406 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 +LL + V PGG+++++ CSL ++ +V+ L++ P + + Sbjct: 407 RLLERAAQGVAPGGVLIYAVCSLTIAETTDVIASFLKTRPEFAPEPFDDPLTGQPT---- 462 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G + I P + + DG F LRR Sbjct: 463 ----SGLLWIWPHLADS--------DGHFVARLRRRA 487 >gi|300812886|ref|ZP_07093281.1| NOL1/NOP2/sun family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496222|gb|EFK31349.1| NOL1/NOP2/sun family protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 474 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 16/304 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 IP FKE+ G+E + D+ + ++ A G Sbjct: 4 IPNQFKEKFTGLLGQEEAGKLLDSL-AEPSKKAYRINSLKKGAVAYPQEEAVPGIPNAYY 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 S P + G+ + QD +A P Q VLDLCAAPGGK+ Q + Sbjct: 63 GEVS-GKDPEWTAGLVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQGEG 121 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR NL+R + + D+F + FDA+LVDAPCS G Sbjct: 122 LLVANEISPSRAKILRENLERWGVANAVVTNCDSFALSARFPGFFDAILVDAPCSGEGMF 181 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ D + +++ A QR++L + + +KPGG +++S C+ ++ EE+V +L Sbjct: 182 RKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWLLD 241 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A + + R P F +L++ Sbjct: 242 EYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQKA 293 Query: 442 IQPK 445 + Sbjct: 294 ASEE 297 >gi|257888364|ref|ZP_05668017.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,141,733] gi|257824418|gb|EEV51350.1| NOL1/NOP2/sun family protein [Enterococcus faecium 1,141,733] Length = 456 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I VLDLCAAPGGK+ Q + + + ++ + Sbjct: 82 HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L+ + + +RI P + G F L Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300 >gi|227552395|ref|ZP_03982444.1| tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257896746|ref|ZP_05676399.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com12] gi|293378072|ref|ZP_06624248.1| NOL1/NOP2/sun family protein [Enterococcus faecium PC4.1] gi|227178483|gb|EEI59455.1| tRNA/rRNA methyltransferase [Enterococcus faecium TX1330] gi|257833311|gb|EEV59732.1| NOL1/NOP2/sun family protein [Enterococcus faecium Com12] gi|292643327|gb|EFF61461.1| NOL1/NOP2/sun family protein [Enterococcus faecium PC4.1] Length = 456 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I VLDLCAAPGGK+ Q + + + ++ + Sbjct: 82 HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L+ + + +RI P + G F L Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300 >gi|146181141|ref|XP_001022219.2| NOL1/NOP2/sun family protein [Tetrahymena thermophila] gi|146144266|gb|EAS01974.2| NOL1/NOP2/sun family protein [Tetrahymena thermophila SB210] Length = 393 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 73/439 (16%), Positives = 139/439 (31%), Gaps = 93/439 (21%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 + + +L ++ L D+ L V +R +D + L Sbjct: 26 EQANPIDSMLRNYLKENK--ALGSNDRKLFTDNVYKLVRHKVYLDTI----SPKPLS--- 76 Query: 80 YSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 +L + + ++ + Sbjct: 77 ---------------------------------------WEGRLDTIYTEKFATQRKNMS 97 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAV 196 + P+ + L + +G+E+ + I A + + V E K V Sbjct: 98 LLPHVRASCPKDLFDVLCDSFGEEKAIEICMAQNLRAPLTVRVNPIKISREELIQKWRDV 157 Query: 197 MLP---------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 G + E++ LP F G + +QD ++ + VLD Sbjct: 158 NKFAIKPTEFSPYGITFTTDKNENLYELPEFKRGYFEIQDEASQLAAFKVKCQIGDHVLD 217 Query: 248 LCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---AFDY 301 CA GGK A + ++ D L++ + ++ + + Sbjct: 218 YCAGAGGKSLAFAPYLKGTGQIYLHDTRDYILQEAKKRFNKAGIQNVQFHTQESLNNNKN 277 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GI 360 K FD V+ D PC+ TGT+RR+PD+ + + + Q + + + FVKP G Sbjct: 278 KLVKKFDWVVCDVPCTGTGTLRRNPDLKYKFSRNRLKYFVDLQASVFKEALPFVKPKTGK 337 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S CSL ++++ + K + + V + TP Sbjct: 338 IVYSTCSLLQEENIFQITKFCKEFNLEVV-------------------DGKHFQTTPGKD 378 Query: 421 EKIDGVSSGMDGFFAVALR 439 + MDGFF L+ Sbjct: 379 VE-------MDGFFCAVLQ 390 >gi|293571145|ref|ZP_06682183.1| Fmu [Enterococcus faecium E980] gi|291608758|gb|EFF38042.1| Fmu [Enterococcus faecium E980] Length = 456 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I VLDLCAAPGGK+ Q + + + ++ + Sbjct: 82 HQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMRGKGLLVSNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAVKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLHCQKRQQEILSSAIKMLKHEGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKS-IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L+ + + +RI P + G F L Sbjct: 262 LSQTVSSGRPEWGSVDGLDKTVRIWPHENQGE--------GHFVAKL 300 >gi|270261528|ref|ZP_06189801.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera 4Rx13] gi|270045012|gb|EFA18103.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera 4Rx13] Length = 480 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 20/262 (7%) Query: 188 TWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNL 243 + +L + G ++ E + S G++++Q+AS+ +PV Sbjct: 60 DYDWRLEPIPWCAEGFWIEREDEELRLGSAAEHLSGLFYIQEASSMLPVSALFADREKPR 119 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPG KT Q+ + + + A + S R++ L N+ R + + D Sbjct: 120 RVLDVAAAPGSKTTQIAALMNNQGGIVANEYSASRVKVLHANISRCGVKNVALTHFDGRV 179 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD + + + A QR+L+ + PG Sbjct: 180 FGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVTAIAATQRELIDSAFHALAPG 239 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+L+ Q+++++V +L + V + PL + AL+ EG++ + P Sbjct: 240 GVMVYSTCTLNAQENQQIVNGLLAAYGDAVSIEPLGELFP---GAEKALTAEGFLHVFPQ 296 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 297 IYDSE--------GFFVARLRK 310 >gi|251796173|ref|YP_003010904.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus sp. JDR-2] gi|247543799|gb|ACT00818.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus sp. JDR-2] Length = 534 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 122/306 (39%), Gaps = 28/306 (9%) Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 E + F + I+ L +D I + + G +E Sbjct: 19 EEFDRFMSSYEDPRVYGIRINRLKLDAGEWKSISPMGEAVRPIPWAPEGFYYEEGARP-G 77 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P + G++++Q+ SA PV+L VLDLCAAPGGK+ Q+ + + D Sbjct: 78 KHPHYHAGLYYIQEPSAMAPVELLDVHPGHRVLDLCAAPGGKSTQIAAKLQGSGVLVSND 137 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDV 328 ++ R + L N++ + ++ + P + FD +LVDAPCS G R+ + Sbjct: 138 NARERTKALAKNIELAGVRNAVVLNEEPSALAPVFRGWFDRILVDAPCSGEGMFRKDESM 197 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + + I + + QR +L + + PGG++V+S C+ +++E + ++L P Sbjct: 198 IAEWEKHSIERCSVMQRHILRDAAAMLAPGGVLVYSTCTFSPEENEAQIAELLAEYP-EF 256 Query: 389 ELVPLNSAYWKSIDMAMALSP-------------EGWIRITPDMLEKIDGVSSGMDGFFA 435 E+ P+ Y G +R+ P +E G +A Sbjct: 257 EVRPVRHRYGWKPGHPEWAGEAGEGLAPGQSESLAGTVRLWPHHIEGE--------GHYA 308 Query: 436 VALRRL 441 L R Sbjct: 309 AVLTRK 314 >gi|121996866|ref|YP_001001653.1| Fmu (Sun) domain-containing protein [Halorhodospira halophila SL1] gi|121588271|gb|ABM60851.1| Fmu (Sun) domain protein [Halorhodospira halophila SL1] Length = 485 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 109/305 (35%), Gaps = 26/305 (8%) Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVML------PTGGIRLKE 207 R + + + + L G L + Sbjct: 22 RYRAVIDDWQAFCDALQRPLSPCLRANTTRLTRDELDKLLRDEGWDPRPLGWQGDALLVD 81 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGA 264 G G++ +Q+A++ +PVQL VLDLCAAPG KT Q+ + Sbjct: 82 GGFRPGHHWGAIAGLYQIQEAASLLPVQLLDPRPGERVLDLCAAPGNKTVQVADALGNRG 141 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDAPCSSTGTIR 323 V A D S RL L + R + D FD V+VDAPCS GT R Sbjct: 142 TVVANDASAGRLGALGQAVKRHGVVNVSQTVRDGQGMPWAAGRFDKVVVDAPCSCEGTFR 201 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + + Q++LLL+G++ +PGG VV+S C+ +++E VV L Sbjct: 202 KTATAAEPTSPAFRQRLVQRQQRLLLRGMALTRPGGTVVYSTCTFAPEENEAVVAAALAR 261 Query: 384 SPIPVELVP-------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 EL+P L+ + R+ P + GFF Sbjct: 262 CSGAFELIPARVAGLQLSPGLEAWDGVDFGADMAACGRLWPHH--------NDTGGFFVA 313 Query: 437 ALRRL 441 LRR+ Sbjct: 314 LLRRV 318 >gi|323492622|ref|ZP_08097766.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis LMG 20546] gi|323312997|gb|EGA66117.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio brasiliensis LMG 20546] Length = 474 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 21/261 (8%) Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPV---QLFGTLNNLSV 245 +L V G + E + + G++++Q+AS+ +PV L SV Sbjct: 61 WQLEPVPWCEEGFWIEADESEVPLGNSAEHMSGLFYIQEASSMMPVSALFLDQQQEFTSV 120 Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301 LD+ AAPG KT Q + + + A + S R++ L N++R + + D + Sbjct: 121 LDMAAAPGSKTTQIASKMSNQGVLVANEFSSSRVKVLHANIERCGVRNAALSNFDGRVFG 180 Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FDAVL+DAPCS GT+R+ D + + ++ + Q+ L+ +KPGG+ Sbjct: 181 GWLPEQFDAVLIDAPCSGEGTVRKDADAMKNWSKESVISISDTQKDLIESAFHALKPGGV 240 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +++++V + + VE L + + + AL+ EG++ I P + Sbjct: 241 MVYSTCTLSIEENQQVCHHLKETFGDAVEFESLATLFP---NADKALTEEGFLHIFPQVY 297 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + GFF LR+L Sbjct: 298 DCE--------GFFVARLRKL 310 >gi|104774096|ref|YP_619076.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423177|emb|CAI97973.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 474 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 122/303 (40%), Gaps = 20/303 (6%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205 IP+ FKE+ G+E + D+ P + + + AV Sbjct: 4 IPDQFKEKFTGLLGQEEAGKLLDSLAEPSKKAYRINSLKEGAVVYSQEEAVPGIPNAYYG 63 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 + P + G+ + QD +A P Q VLDLCAAPGGK+ Q + Sbjct: 64 GVSGKD----PEWTAGMVYSQDPAAMFPAQAIPVKPGDKVLDLCAAPGGKSTALAQKLQG 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++S R + LR NL+R + + D+F + FDA+LVDAPCS G Sbjct: 120 EGLLVANEISPSRAKILRENLERWGVSNAVVTNCDSFALSARFPGFFDAILVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ D + +++ A QR++L + + +KPGG +++S C+ ++ EE+V + Sbjct: 180 MFRKSEDAIKYWSQENVDLCADRQREILTEAVKMLKPGGYLLYSTCTFSPEEDEEIVSWL 239 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + + A + + R P F +L+ Sbjct: 240 LDEYGFKLLPIAAEKAAPGRPEWGNGDASLANCARFWPQDGVGEGQ--------FVASLQ 291 Query: 440 RLI 442 + Sbjct: 292 KAA 294 >gi|317052704|ref|YP_004113820.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5] gi|316947788|gb|ADU67264.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5] Length = 316 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 120/324 (37%), Gaps = 33/324 (10%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA------ 195 ++ S +P F +RL + V + A L Sbjct: 1 MSYSSPLPAEFLQRLTAIVPPSWYEQVFATFHQHRTCSFRVNTLRSSTADALAELSALDI 60 Query: 196 ----VMLPTGGIRLKELPESIVSLPG-FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 V + S++S F+EG ++Q+ S+ PV L VLDL A Sbjct: 61 SASPVPWCAEAFVVPHGQRSLLSTSAAFSEGRIYIQNLSSMAPVLLLNPRPGEQVLDLAA 120 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306 APGGKT L + + ++A++ K R +L+ N++ D Sbjct: 121 APGGKTLHLAALMENRGWISAVEAVKDRFFRLKANVEAFGASIVHTYLRDGRTVGLACPE 180 Query: 307 -FDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FD VL+DAPCSS W I ++A Q+ LL +KPGG +V+ Sbjct: 181 HFDRVLLDAPCSSEARFHADNPASWQFWSPAKIREAARKQKPLLFSAWQSLKPGGTMVYC 240 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLN-------SAYWKSIDMAMALSPEGWIRITP 417 CS +++E +V +L+ V+++PL + E RI P Sbjct: 241 TCSFAPEENEAMVAALLKKYGDAVDILPLELPFANTIPGLTHWLGKEFDPRLERTRRILP 300 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 D MD F+ LR++ Sbjct: 301 DAF---------MDSFYLAHLRKV 315 >gi|260101298|ref|ZP_05751535.1| NOL1/NOP2/sun family protein [Lactobacillus helveticus DSM 20075] gi|260084883|gb|EEW69003.1| NOL1/NOP2/sun family protein [Lactobacillus helveticus DSM 20075] Length = 460 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 25/305 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P FKE+ + G E + A I + + A+ LN + Sbjct: 4 LPVEFKEKYQKLLGDEEATELFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 E+ P + G + QD +A P L G VLDLCAAPGGKT + + + Sbjct: 64 GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 + A ++S R + LR N++R + I P FD +LVDAPCS G Sbjct: 121 EGLLVANEISGTRAKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+ +L + + +KP G +++S C+ ++ E++V + Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + + D L+ IR P FA Sbjct: 241 VNEHGFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FA 290 Query: 436 VALRR 440 L++ Sbjct: 291 AVLQK 295 >gi|327484132|gb|AEA78539.1| Ribosomal RNA small subunit methyltransferase F [Vibrio cholerae LMA3894-4] Length = 473 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 52 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + +VLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 GNAHYDTVLDMAAAPGSKTTQIAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 171 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 231 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 232 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 288 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|14521973|ref|NP_127450.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus abyssi GE5] gi|5459193|emb|CAB50679.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5] Length = 385 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L F +G ++ Q + + ++ + ++D+ AAPGGKT + + ++ Sbjct: 168 SLSELKSFEKGYFYPQSLPSMVATRVLEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEII 227 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D SK RL+K+ NL RL + +I+MDA + D +L+DAPC++ G P Sbjct: 228 AIDKSKNRLKKMEENLRRLGVKNVKLIQMDARNLPDLGLKADKILLDAPCTALGV---RP 284 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + R I +A +QR + I ++ GG++V+S C+L +++E V+ +L+ Sbjct: 285 KLWEERTPKHIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKK--- 341 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + + R P GFF LR++ Sbjct: 342 -----GMKLEDQQIFIGSPGIGLDKVQRFYPH--------KHNTQGFFIAKLRKV 383 >gi|86149856|ref|ZP_01068085.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|157414915|ref|YP_001482171.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 81116] gi|85839674|gb|EAQ56934.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|157385879|gb|ABV52194.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747553|gb|ADN90823.1| NOL1\\NOP2\\sun family protein [Campylobacter jejuni subsp. jejuni M1] Length = 292 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 27/304 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208 R+E Y K+ + I + + + IE + L I Sbjct: 1 MLSRIEKLYTKDEMQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINAYCY 60 Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + S+ F E +++Q+ S+ + VLD+CAAPGGK+ Sbjct: 61 LFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANF 120 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++S+ R L+ NL + A + + FD +L+DAPCS+ Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236 Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + + L + K+ RI P + DGFF Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287 Query: 438 LRRL 441 LR+L Sbjct: 288 LRKL 291 >gi|323466403|gb|ADX70090.1| tRNA/rRNA methyltransferase [Lactobacillus helveticus H10] Length = 460 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 25/305 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P FKE+ + G E + A I + + A+ LN + Sbjct: 4 LPVEFKEKYQKLLGDEEATELFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 E+ P + G + QD +A P L G VLDLCAAPGGKT + + + Sbjct: 64 GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 + A ++S R + LR N++R + I P FD +LVDAPCS G Sbjct: 121 EGLLVANEISGTRDKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+ +L + + +KP G +++S C+ ++ E++V + Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + + D L+ IR P FA Sbjct: 241 VNEHDFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FA 290 Query: 436 VALRR 440 L++ Sbjct: 291 AVLQK 295 >gi|254437547|ref|ZP_05051041.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 307] gi|198252993|gb|EDY77307.1| NOL1/NOP2/sun family protein [Octadecabacter antarcticus 307] Length = 387 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 80/450 (17%), Positives = 148/450 (32%), Gaps = 79/450 (17%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+ ++ + ++ + L F +D+ +R V LR Sbjct: 1 MTP--AARVAAAIEILEMIFDGATPEKSLTGWGRRHRFAG--SKDRAAIRDHVFQALRCR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVS--VAQILYLDVADYAVVDLAVEQAKRDKENR 118 + + +R + V ++ + +A V E A+ ++ Sbjct: 57 ASYGWLGSAETGRG------VMLGAMRAAGQVDEM-FSGIAHAPRVVEEGEDARALEDAD 109 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 A + +P W ++ G + + + + + Sbjct: 110 R-----------------------ATKNDMPAWLLPYFDSALGDD-SDGVMEILKTRAGV 145 Query: 179 DLTVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 L V ++ V +++ E + + G+ +QDA Sbjct: 146 FLRVNAARTDTMEMIDVLAQDGVTAVPVADIKNALQVTENERRVAQSDAYLAGLIELQDA 205 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 S+ + G VLDLCA GGK + GA VTA D+ RR+ L +R Sbjct: 206 SSQHAMIGLGLTAGQRVLDLCAGGGGKALAMAALGADVTAHDIDPRRMVDLAPRAERAG- 264 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I + FD VLVDAPCS +GT RR P W + +++ Q +L Sbjct: 265 --VVIETVSTDQLSTLVPFDVVLVDAPCSGSGTWRRTPAAKWDLTPERLLELTQIQDDVL 322 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 Q + V G + ++ CS+ ++ + +Q +++ + Sbjct: 323 AQAATLVGSDGTLAYATCSVFDVENIDRIQDFIKTQGDFKMV------------------ 364 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + +G DGFF L Sbjct: 365 -----------SKTLRRPCAGGDGFFIAQL 383 >gi|313899981|ref|ZP_07833481.1| NOL1/NOP2/sun family protein [Clostridium sp. HGF2] gi|312955033|gb|EFR36701.1| NOL1/NOP2/sun family protein [Clostridium sp. HGF2] Length = 442 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 17/272 (6%) Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + + + D++ A + + + + + + + P G++++Q+ SA+ Sbjct: 35 NTAKLSVDQFHDLKVCASQ--PSSICPESFYIPKDIKGLGNHPAHLAGLFYMQEPSAASA 92 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 V++ N VLD+CAAPGGK+ Q+ + + ++ RR + L N++RL Sbjct: 93 VEVLDVQRNDWVLDMCAAPGGKSTQIAAKLQDRGFLVSNEIESRRAQILLSNMERLGFSR 152 Query: 291 EDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 I + FD VLVDAPCS G ++H + + ++ A Q +L Sbjct: 153 CMITNTRPQQIAKEMSGWFDRVLVDAPCSGEGMFKKHSKAMDDWSEEHVLACAQRQLHIL 212 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +K G +V+S C+ +++E+VV ++ P +ELV + + + L Sbjct: 213 DSAYAALKEDGTLVYSTCTYSMEENEQVVYAFMKQHP-DMELVDCGVTFGRRGLPYLDLD 271 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E RI P +G F R+ Sbjct: 272 TEKLRRIFP---------MDQGEGHFVAKFRK 294 >gi|260893130|ref|YP_003239227.1| Fmu (Sun) domain protein [Ammonifex degensii KC4] gi|260865271|gb|ACX52377.1| Fmu (Sun) domain protein [Ammonifex degensii KC4] Length = 460 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 17/257 (6%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L V G + ++ P A G++++QD +A + L VLDLCAAP Sbjct: 55 LEPVPWCPEGFVVPDIGARPALHPYHAAGLYYLQDPAAMLAGVLLDPRPGEWVLDLCAAP 114 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307 GGK + + + A D + RR+ L NL+R+ + +++ + + F Sbjct: 115 GGKATHLAARLQNCGVLVANDPNPRRVTVLARNLERIGVTCAVVLQEEPARLAQRFAGLF 174 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VLVDAPCS T+ P+ + A +Q ++L + +PGG ++++ C+ Sbjct: 175 DRVLVDAPCSGEATLAHDPEARRRWSPKKLRSMAAWQGRILAEAARLTRPGGYLLYATCT 234 Query: 368 LDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 +++EEV+ L + P VE PL +R+ P Sbjct: 235 FAPEENEEVIASFLEAHPEFRLVEVERHPLFDRGHPEWSRLPLPELARAVRLWPHRGPGK 294 Query: 424 DGVSSGMDGFFAVALRR 440 G F L++ Sbjct: 295 --------GHFYALLQK 303 >gi|168334670|ref|ZP_02692810.1| putative RNA methylase, NOL1/NOP2/sun family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 446 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 104/263 (39%), Gaps = 18/263 (6%) Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + E + +P E P +A G++++Q+ SA L + Sbjct: 46 TNWEAISPFAEMEAVPWCAEGRYYADERPAKHPYYAAGLYYIQEPSAMAVAALLPIEKDD 105 Query: 244 SVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLCAAPGGK+ Q++ + A D+S R L NL+ I+ D Sbjct: 106 RVLDLCAAPGGKSTQVVAKLGPKGVLVANDISFSRARTLEKNLEGFGAKNTMIVSEDPKK 165 Query: 301 YC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 FD +++DAPCS G R+ + + + +I Q ++L +K G Sbjct: 166 LAKLWANYFDKIIIDAPCSGEGMFRKDEKAIKSWENFEIDHFCQIQTEILESAAKMLKTG 225 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++V+S C+ ++E +++ L + E V + S G +R+ P Sbjct: 226 GMMVYSTCTFATAENESCIEQFLETH-ADFESVAVEIKNGLSDGFGNI----GAVRLWPH 280 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 ++ G F L + Sbjct: 281 KIKGE--------GHFVCLLIKK 295 >gi|511454|gb|AAA56914.1| unknown [Coxiella burnetii] Length = 265 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 75/240 (31%), Positives = 121/240 (50%), Gaps = 25/240 (10%) Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-- 266 P S+ LPGF EG ++QDA+ L NN +VLD CAAPG KT+ ++ + Sbjct: 41 PCSVHQLPGFNEGYCYIQDAAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKT 100 Query: 267 -TALDVSKRRLEKLRCNLDRLHLYAEDIIEM-----DAFDYCPKKLFDAVLVDAPCSSTG 320 A+D +K+RL +++ N+ RL L E + + + +LFD +L+DAPCS+TG Sbjct: 101 LVAIDNNKQRLNRIKENITRLGLRQEHLQCLLADVSQIDQWSSGELFDRILLDAPCSATG 160 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 IRRHPD+ R DI + + +LL + +K GG +++S CS+ ++E+V+++ Sbjct: 161 VIRRHPDIKLLRQPGDISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEF 220 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + VEL P N G +++ + DGF+ L + Sbjct: 221 LSTH-DKVELSPTNV--------------HGGLQL--KYGVQQLPGQDNKDGFYYSLLFK 263 >gi|294628319|ref|ZP_06706879.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292831652|gb|EFF90001.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 335 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 91/274 (33%), Gaps = 25/274 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + + RD L +V TLR D Sbjct: 22 PVRILAFDALRAVDERDAYANLVLPPLLRKAREKGDFDARDAALATELVYGTLRRQGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V VE A+ + AK V Sbjct: 82 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRAKFV 140 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+V++ ++ +A + P W L + G R + Sbjct: 141 NAVLRKVAQHDLDGWLEKVAPPYDDDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP----ESIVSLPGFAEGVWWV 225 +A + L + T L G + ++ EG V Sbjct: 201 EADNERPEVTLVARPGRATPDELLGEEAAVPGRWSPYAVRLTEGGEPGAVTAVREGRAGV 260 Query: 226 QDASAS----IPVQLFGTLNNLSVLDLCAAPGGK 255 QD + + LD CA PGGK Sbjct: 261 QDEGSQLVALALANAPLDGPDQKWLDGCAGPGGK 294 >gi|116333508|ref|YP_795035.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367] gi|116098855|gb|ABJ64004.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367] Length = 452 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 20/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F + + G E + + +P V L A Sbjct: 1 MNLPDDFVTKYQRLLGTEAAAFL-ASFDTPSLSGYRVNPTHHDLPTTLTAAPTVAYEPLG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 S G + Q+ SA VLDLCAAPGGKT + Sbjct: 60 HFGSVS-GRSLMHQSGAVYSQEPSAMFVGATAAPKVGERVLDLCAAPGGKTTHLASYLQG 118 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + +++++R++ L N++R + I P FD VLVDAPCS G Sbjct: 119 TGLLVTNEINRKRVKVLAENVERFGVPNAVIFNDAPEQLSPVFPDYFDKVLVDAPCSGEG 178 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + D + A QR +L + + VKPGG +++S C+ ++ E+++ V Sbjct: 179 MFRKDPAAMTYWSLDYVNDCAARQRDILTEALKMVKPGGQLIYSTCTFAPEEDEQMMAWV 238 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAV 436 L++ P LVP+ + R+ P +++ G F Sbjct: 239 LQNFP-EFHLVPIQKVGGVVDARPEWADGNPELAKAARLFPHLMQGE--------GHFVA 289 Query: 437 ALRR 440 L R Sbjct: 290 KLER 293 >gi|229523586|ref|ZP_04412991.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae bv. albensis VL426] gi|229337167|gb|EEO02184.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae bv. albensis VL426] Length = 459 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 38 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 97 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 98 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 157 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 158 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 217 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 218 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 274 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 275 LHIFPQMYDCE--------GFFVAKIRKLA 296 >gi|226329514|ref|ZP_03805032.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198] gi|225202700|gb|EEG85054.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198] Length = 194 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 87/196 (44%), Gaps = 9/196 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK+ N R +++ ++ V+ + +SL+ ++ + +S +D+ L++ I LR L Sbjct: 1 MKTSYNLRSIAAKAINQVLDQGLSLSTVIPEL-----QKNISDKDKALLQEICFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 P+++ ++ ++ L K+ L L+ V + Q+LY + +A + V A K+ + Sbjct: 56 PQLEWIIQQLMDKPLKGKQRILHYLIMVGLYQLLYTRIPAHAALAETVNGAVALKKPQ-L 114 Query: 121 AKLVNSI---LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 L+N + +R E Q + P W R++ Y ++ + I P Sbjct: 115 KGLINGVLRQFQRQQDILNERFQNSENRFLHPSWLLARIKKAYPEQWMNIIEGNNQKPKT 174 Query: 178 IDLTVKFDIETWAHKL 193 ++ + + +L Sbjct: 175 TNVVTCKSASSLSRRL 190 >gi|191638489|ref|YP_001987655.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei BL23] gi|190712791|emb|CAQ66797.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei BL23] gi|327382524|gb|AEA54000.1| NOL1/NOP2/sun family protein [Lactobacillus casei LC2W] gi|327385721|gb|AEA57195.1| NOL1/NOP2/sun family protein [Lactobacillus casei BD-II] Length = 443 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 115/301 (38%), Gaps = 18/301 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +PE FKE+ G E + A + + W + Sbjct: 1 MQLPEAFKEKYTRLLGDEAAAFL--ATFEAPAESGFRRDPAKPWPLDESLTEPIPWSPWG 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 + + A G+ + Q+ SA + VLDLCAAPGGK+ QL Sbjct: 59 YYGKVAGNDIDHVA-GLVYSQEPSAQFVGTVAAPKPGERVLDLCAAPGGKSTQLACYLGD 117 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + +++ R + L NL+R + D ++FD +LVDAPCS G Sbjct: 118 TGLLVSNEINGPRSKVLSSNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEG 177 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A Q+++L + + PGG +++S C+ ++ E+++ + Sbjct: 178 MFRKDPDAIKYWHADYPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWL 237 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L ++ + + +PE +R+ P L G F L Sbjct: 238 LANNAFTLTPIKQYPGMEAGRPAWADGNPELAKTVRLFPHRLRGE--------GHFVAKL 289 Query: 439 R 439 + Sbjct: 290 K 290 >gi|88597052|ref|ZP_01100288.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88190741|gb|EAQ94714.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|284925896|gb|ADC28248.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315929042|gb|EFV08281.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 305] Length = 292 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 27/304 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208 R+E Y K+ + I + + + IE + L I + Sbjct: 1 MLSRIEKLYTKDEMQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINVYCY 60 Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + S+ F E +++Q+ S+ + SVLD+CAAPGGK+ Sbjct: 61 LFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANF 120 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++S+ R L+ NL + A + + FD +L+DAPCS+ Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236 Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + + L + K+ RI P + DGFF Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287 Query: 438 LRRL 441 LR+L Sbjct: 288 LRKL 291 >gi|260778560|ref|ZP_05887452.1| ribosomal RNA small subunit methyltransferase F [Vibrio coralliilyticus ATCC BAA-450] gi|260604724|gb|EEX31019.1| ribosomal RNA small subunit methyltransferase F [Vibrio coralliilyticus ATCC BAA-450] Length = 463 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 126/265 (47%), Gaps = 21/265 (7%) Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-- 246 +L+ V G + E + + G++++Q+AS+ +PV N L Sbjct: 50 WQLSPVPWCEEGFWIEADESETPLGNTAEHMSGLFYIQEASSMMPVSALFQDQNDDFLSV 109 Query: 247 -DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301 D+ AAPG KT Q + + + A + S R++ L N++R + + D + Sbjct: 110 LDMAAAPGSKTTQIAAEMDNLGVLVANEFSSSRVKVLHANIERCGVRNAALSNYDGRVFG 169 Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FDAVL+DAPCS GT+R+ D + D ++ A Q+ L+ +KPGG+ Sbjct: 170 GWLPEQFDAVLIDAPCSGEGTVRKDADAMKNWSKDSVLSIADTQKDLIESAFYALKPGGV 229 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +++++V + VE PL+S + +S AL+ EG++ I P M Sbjct: 230 MVYSTCTLSIEENQQVCLHLKEQFGDLVEFEPLDSLFPES---EKALTEEGFLHIFPQMY 286 Query: 421 EKIDGVSSGMDGFFAVALRRLIQPK 445 + GFF +++L + Sbjct: 287 DCE--------GFFVARMKKLGSTE 303 >gi|57640295|ref|YP_182773.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus kodakarensis KOD1] gi|57158619|dbj|BAD84549.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus kodakarensis KOD1] Length = 312 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 122/266 (45%), Gaps = 19/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E + +P +++ +P G+ + Q+AS+ IP + VL Sbjct: 53 ERLKEEFELEPIPWVREGFFINVDNLARVPEHGLGLVFGQEASSMIPPVVLDPKPGELVL 112 Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-C 302 D+ AAPG K AQ + + + A D ++ R L NL+R+ + + D + Sbjct: 113 DMAAAPGSKTGQIAQYMQNEGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGASFAR 172 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD VL+DAPCSS G IR+ L +VK Q++L+L G +KPGG++V Sbjct: 173 FENTFDRVLLDAPCSSVGMIRKSWRFLREWREKAVVKYMNVQKRLILAGYRALKPGGVMV 232 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPL----NSAYWKSIDMAMALSPEGWIRITPD 418 +S C++D ++EEVV +LR + +E + L + + + + +RI P+ Sbjct: 233 YSTCTIDPLENEEVVDYLLRKTDARLERIDLPVKTSEPVLEWEGKEYSEELKKALRIHPN 292 Query: 419 MLEKIDGVSSGMDGFFAVALRRLIQP 444 + + FF ++++P Sbjct: 293 D--------NDTEAFFIA---KIVKP 307 >gi|108760909|ref|YP_631923.1| RsmB/NOP family methyltransferase [Myxococcus xanthus DK 1622] gi|108464789|gb|ABF89974.1| methyltransferase, RsmB/NOP family [Myxococcus xanthus DK 1622] Length = 428 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 84/438 (19%), Positives = 148/438 (33%), Gaps = 36/438 (8%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + L L ++ L +++ V R +D + + Sbjct: 3 RGEPLKAALANALREA--NGLGGQERRFAAMAVRELSRHQRLLDLAARLLGHTMGKVGLT 60 Query: 81 SLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN--RHFAKLVNSILRRVSREKIEL 138 Q L+R ++ + ++ + + V + Sbjct: 61 EDQALVRYALWRRIFCGEGWARIGPEVRLPGPVRPRTIKDDLLQRVVEQPLPEAPLPESQ 120 Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YIDLTVKFDIETWAHKLNAV 196 +R+A P W +RL Y ++ + + + + + + L Sbjct: 121 TERLAIRYSFPNWLVQRLAQVYPEDVLEGLLASLDEEPSLHFRVRPPGTRDAVLAALKEE 180 Query: 197 MLPTGGI-------RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN----LSV 245 + + R+ + + G VQD + + +L +V Sbjct: 181 GVNAEPVAAAPDAVRVTDSSHRVFETRMMKSGRLQVQDVGSQLISELCRPREGSLEGFTV 240 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 D+CA GGKT A + +V A D S+RRL + R + L Sbjct: 241 ADVCAGAGGKTLALADFVGPQGRVLAGDRSRRRLAEARERVRHFSLRQVA-----FPHPL 295 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P D +L+DAPCS TG++ R PD W +I K Q +LL + KPG ++V Sbjct: 296 PLSDADVLLIDAPCSGTGSLAREPDQKWKLTAQEIAKYQATQSELLDEVSRQAKPGALIV 355 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++ E VV+ L P L P+ A P +++ P + Sbjct: 356 YATCSVMPEEDEAVVEAFLAKHP-DFTLEPVEDVLGAERAALAAQGP--YLKALPPKVPG 412 Query: 423 IDGVSSGMDGFFAVALRR 440 GFFA LRR Sbjct: 413 G--------GFFAARLRR 422 >gi|260587786|ref|ZP_05853699.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583] gi|331083788|ref|ZP_08332897.1| hypothetical protein HMPREF0992_01821 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542051|gb|EEX22620.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583] gi|330403213|gb|EGG82773.1| hypothetical protein HMPREF0992_01821 [Lachnospiraceae bacterium 6_1_63FAA] Length = 463 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 103/261 (39%), Gaps = 19/261 (7%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + G + + P + G++++Q+ SA P VLDLCAA Sbjct: 54 EKEEIPWVENGYYIHGGEGNPARHPYYFAGLYYLQEPSAMTPASRLEIQPYDKVLDLCAA 113 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKL 306 PGGK + + + A D+S R + L NL+ + E + Sbjct: 114 PGGKATELVGRLQGKGFLLANDLSNSRAKALLKNLELTGAPNFYVTSEEPAKLVKSFPEF 173 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS G + P + A Q++L++QG +KPGG +++S C Sbjct: 174 FDKILIDAPCSGEGMFHKEPKMAEYWLEKSPDYYAEIQKELIVQGAQMLKPGGKMLYSTC 233 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE------GWIRITPDML 420 + K+++EE + +L L PL + S E +RI P + Sbjct: 234 TFSKKENEETIAYLLEQCEDMEVLAPLGYGGFSEGFPLEGKSEEMCSQLKKCVRIFPHKM 293 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 G F L++ Sbjct: 294 AGE--------GHFLALLQKK 306 >gi|167768018|ref|ZP_02440071.1| hypothetical protein CLOSS21_02561 [Clostridium sp. SS2/1] gi|167710347|gb|EDS20926.1| hypothetical protein CLOSS21_02561 [Clostridium sp. SS2/1] Length = 462 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 T + E P + G++++Q+ SA P VLDLC APGGK+ Sbjct: 67 PWTDNGFYVDREEKPSKHPYYHAGLYYIQEPSAMTPASYLPVEPGDRVLDLCGAPGGKST 126 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLV 312 + ++ + + DVS R + L N++ + + I+ +A P F+ +L+ Sbjct: 127 ELGAKLMGEGLLVSNDVSISRTKALIRNIEMFGIRNDMILCTEAKYLVPSMTGFFNKILI 186 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + A QR+++ I + PGG++++S C+ ++ Sbjct: 187 DAPCSGEGMFRKGNNEIKNWQQKGSEPYAKLQREIVDDAIKLLAPGGMLLYSTCTFSPEE 246 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVS 427 +E+V++ +L + + LVP+ + IR+ P ++ Sbjct: 247 NEQVIEYLLEKN-EDLSLVPMKMCEGFDNGHPEWTLTGREDIKQCIRLWPHKIKGE---- 301 Query: 428 SGMDGFFAVALRR 440 G F L++ Sbjct: 302 ----GHFLALLKK 310 >gi|260437130|ref|ZP_05790946.1| NOL1/NOP2/sun family protein [Butyrivibrio crossotus DSM 2876] gi|292810442|gb|EFF69647.1| NOL1/NOP2/sun family protein [Butyrivibrio crossotus DSM 2876] Length = 448 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 113/307 (36%), Gaps = 25/307 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +PE + + + ++ L V + + I Sbjct: 1 MQLPEKYVNS-MKELLADEFDSYMESFNEKRLYGLRVNTAKISVEDFMKICPFHIERIPW 59 Query: 206 KEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 + P + G++++Q+ SA P + VLDLCAAPGGK+ +L Sbjct: 60 IPNGFYYSENDKPAKHPYYFAGLYYLQEPSAMTPAYVLPVNKGDKVLDLCAAPGGKSTEL 119 Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314 + + D+S R + L N++ + I K FD +LVDA Sbjct: 120 GAKLSGTGLLVSNDISASRAKALVKNIEVFGIGNVVITCEYPEKLAAKFPEFFDKILVDA 179 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ ++ + + + + QR +L + +K GG +++S C+ K ++E Sbjct: 180 PCSGEGMFRKDNKLIKSWEQEGPEFYSPIQRGILNSAAAMLKEGGYILYSTCTFSKMENE 239 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 + ++ L ELV + M + +R+ P L+ G F Sbjct: 240 DNIRDFLDRH-SDFELVKIFDYEGFVRAYGMNEA----VRLFPHHLKGE--------GHF 286 Query: 435 AVALRRL 441 L + Sbjct: 287 VALLHKK 293 >gi|328466026|gb|EGF37203.1| putative nucleolar protein [Lactobacillus helveticus MTCC 5463] Length = 460 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 25/305 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P FKE+ + G E A I + + A+ LN + Sbjct: 4 LPVEFKEKYQKLLGDEEATEFFAAMNEESKKAIRINTLKNPVKIAYSLNEAIPDLRDAYY 63 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 E+ P + G + QD +A P L G VLDLCAAPGGKT + + + Sbjct: 64 GEISG---EDPEWVSGYVYSQDPAAMFPAALSGVKPGDKVLDLCAAPGGKTTKLGEQLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 + A ++S R + LR N++R + I P FD +LVDAPCS G Sbjct: 121 EGLLVANEISGTRAKALRENVERWGIGNALITNESPEKLSPVFYDFFDVILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+ +L + + +KP G +++S C+ ++ E++V + Sbjct: 181 MFRKNPEAIDYWSQDYVLTCQRRQKDILNEAVKMLKPNGRLIYSTCTFAPEEDEQIVSWL 240 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + + D L+ IR P FA Sbjct: 241 VNEHGFSILDTEIKDEKISLGHPEWSDNNPELTK--TIRFWPQDGVGEGQ--------FA 290 Query: 436 VALRR 440 L++ Sbjct: 291 AVLQK 295 >gi|317498388|ref|ZP_07956683.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894282|gb|EFV16469.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 453 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 108/253 (42%), Gaps = 19/253 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 T + E P + G++++Q+ SA P VLDLC APGGK+ Sbjct: 58 PWTDNGFYVDREEKPSKHPYYHAGLYYIQEPSAMTPASYLPVEPGDRVLDLCGAPGGKST 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLV 312 + ++ + + DVS R + L N++ + + I+ +A P F+ +L+ Sbjct: 118 ELGAKLMGEGLLVSNDVSISRTKALIRNIEMFGIRNDMILCTEAKYLVPSMTGFFNKILI 177 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + A QR+++ I + PGG++++S C+ ++ Sbjct: 178 DAPCSGEGMFRKGNNEIKNWQQKGSEPYAKLQREIVDDAIKLLAPGGMLLYSTCTFSPEE 237 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA-----LSPEGWIRITPDMLEKIDGVS 427 +E+V++ +L + + LVP+ + IR+ P ++ Sbjct: 238 NEQVIEYLLEKN-EDLSLVPMKMCEGFDHGHPEWTLTGREDIKQCIRLWPHKIKGE---- 292 Query: 428 SGMDGFFAVALRR 440 G F L++ Sbjct: 293 ----GHFLALLKK 301 >gi|239631422|ref|ZP_04674453.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525887|gb|EEQ64888.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 443 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 116/301 (38%), Gaps = 18/301 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +PE FKE+ G E + A + + W + Sbjct: 1 MQLPEAFKEKYTRLLGDEAAAFL--ATFEAPAESGFRRDPAKPWPLDESLTEPIPWSPWG 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 + + A G+ + Q+ SA + + VLDLCAAPGGK+ QL Sbjct: 59 YYGKVAGNDIDHVA-GLVYSQEPSAQFVGTVAAPKSGERVLDLCAAPGGKSTQLACYLGD 117 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + +++ R + L NL+R + D ++FD +LVDAPCS G Sbjct: 118 TGLLVSNEINGPRSKVLSGNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEG 177 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A Q+++L + + PGG +++S C+ ++ E+++ + Sbjct: 178 MFRKDPDAIQYWHADYPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWL 237 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L ++ + + +PE +R+ P L G F L Sbjct: 238 LANNAFTLTPIKQYPGMEAGRPAWADGNPELAKTVRLFPHRLRGE--------GHFVAKL 289 Query: 439 R 439 + Sbjct: 290 K 290 >gi|149923973|ref|ZP_01912358.1| Fmu (Sun) domain protein [Plesiocystis pacifica SIR-1] gi|149815151|gb|EDM74702.1| Fmu (Sun) domain protein [Plesiocystis pacifica SIR-1] Length = 467 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 102/235 (43%), Gaps = 20/235 (8%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSK 273 + G+ +Q+ + +P QL G VLDLCAAPG K+AQL + A +V A D S Sbjct: 75 AYLAGLLHIQEEVSMLPAQLLGVQPGERVLDLCAAPGNKSAQLAAALANAGRVIANDRSM 134 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R+ R L+RL L +DA Y +D VLVDAPCS GT R+ W Sbjct: 135 GRMRACRQVLERLGLVNVATTVLDARQYPHAGAPYDRVLVDAPCSGEGTCRK--LRRWRV 192 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + A Q +L + + +PGG VV+S C+ +++E VV +LR L Sbjct: 193 DEAGSRRMAAVQLDILREAVKLCRPGGRVVYSTCTFAPEENECVVDALLRGGAPVRSLPA 252 Query: 393 LNSAYWKSIDMAMALSP------EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + E +RI P + GFF L RL Sbjct: 253 RVPGFRGEPGLRAWAGRELDPQLEHALRIWPHHNDSG--------GFFIAVLERL 299 >gi|84500800|ref|ZP_00999035.1| possible NOL1/NOP2/sun family protein [Oceanicola batsensis HTCC2597] gi|84390867|gb|EAQ03285.1| possible NOL1/NOP2/sun family protein [Oceanicola batsensis HTCC2597] Length = 392 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 86/452 (19%), Positives = 135/452 (29%), Gaps = 74/452 (16%) Query: 1 MKSGMNARLV-SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR+ ++ LL V+ L + + RD+ +R V LR Sbjct: 1 MTP--EARIATAADLLD-VILAGDPAERALTDWARRNRYAG--SRDRAAIRDHVYDALRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + L + + A Sbjct: 56 RRSFALLGGGETGRG-----------LMLG-YLLSEGRDPRDVFTGQGYGPAPLTGAEAA 103 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + R + + P+W +LE G +R I+ + Sbjct: 104 ALAETPAEALRAAPRPVACDM--------PDWLWPQLETSLG-DRTETIAAILRRRAPVF 154 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIR----------LKELPESIVSLPGFAEGVWWVQDAS 229 L V A A+ R + + + + EG+ +QDA+ Sbjct: 155 LRVNLRKTDRAAARAALAAEEIVTRPHALAETALEVTDGARRVAMSRAYDEGLVELQDAA 214 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT-AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + LSVLD CA GGKT A TA D R+ L R + Sbjct: 215 SQAVAAALPLREGLSVLDYCAGGGGKTLAIAGRIDGTFTAHDADAGRMADLPERARRAGI 274 Query: 289 YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 P+ FD VL D PCS +G RR P W + + + Q +L Sbjct: 275 AVTLTD-------RPRGPFDLVLCDVPCSGSGAWRRSPSGKWALSQETLDRLNATQLDIL 327 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + V PGG + + CSL + +++E V ++ D ++ Sbjct: 328 KRAAGLVAPGGTLAYVTCSLLRAENQERVAAF------------------RATDPGWRIA 369 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + PD G DGF+ L R Sbjct: 370 AE--RQFLPD---------EGGDGFYLACLSR 390 >gi|116494978|ref|YP_806712.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334] gi|227535017|ref|ZP_03965066.1| tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105128|gb|ABJ70270.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334] gi|227187332|gb|EEI67399.1| tRNA/rRNA methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 443 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 15/226 (6%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277 G+ + Q+ SA + VLDLCAAPGGK+ QL + + +++ R + Sbjct: 73 GLVYSQEPSAQFVGTVAAPKPGERVLDLCAAPGGKSTQLACYLGDTGLLVSNEINGPRSK 132 Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + D ++FD +LVDAPCS G R+ PD + D Sbjct: 133 VLSGNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEGMFRKDPDAIQYWHAD 192 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A Q+++L + + PGG +++S C+ ++ E+++ +L ++ + + Sbjct: 193 YPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWLLANNAFTLTPIKQYP 252 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +PE +R+ P L G F L+ Sbjct: 253 GMEAGRPAWADGNPELAKTVRLFPHRLRGE--------GHFVAKLK 290 >gi|229514909|ref|ZP_04404369.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TMA 21] gi|229347614|gb|EEO12573.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TMA 21] Length = 459 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 38 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 97 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 98 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 157 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 158 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 217 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 218 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 274 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 275 LHIFPQMYDCE--------GFFVAKIRKLA 296 >gi|114771069|ref|ZP_01448509.1| NOL1/NOP2/sun family protein [alpha proteobacterium HTCC2255] gi|114548351|gb|EAU51237.1| NOL1/NOP2/sun family protein [alpha proteobacterium HTCC2255] Length = 387 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 138/394 (35%), Gaps = 39/394 (9%) Query: 1 MKSGMNARLVS-SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + +L ++ L + + F +D+ +R +V +LR Sbjct: 1 MTPS--ARYAASISILDKIIA-GAPAERELTIWARGNRFAG--SKDRAAIRDLVYDSLRN 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 L + V V + +E + Sbjct: 56 LRSYEHFSGLSGAR---------------GVF------VGRLISKNEEIE---SIFNGQG 91 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + + + + + A IP+W E+ N + + + + + Sbjct: 92 YGPVCLTDIEKNTVNTKKNDMPYAVQMDIPDWLSEKFGNIHNYNILKSRAPIDLRVNIKK 151 Query: 180 LTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL 236 +++K I + + L +R+K I + G+ +QDA + V Sbjct: 152 ISLKSAISELKKDNIETEKLDLVDTALRVKGETRKIPQTKLYLNGLIELQDAGSQALVAQ 211 Query: 237 FGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 N VLD CA GGK A + +A D ++ RL++L+ R + Sbjct: 212 LDCPKNGKVLDYCAGGGGKTLAIASRTFNNVSFSAYDKNQSRLKELKIRAQRAG---IKV 268 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + +D V+VD PCS +G+ RR PD W +++ Q ++L Sbjct: 269 DLLKNDPVIGIEKYDLVVVDVPCSGSGSWRRSPDAKWKFTEQRLIELMAIQTEILENTAD 328 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 V GG + + CSL ++EE V K + + Sbjct: 329 LVATGGTLAYMTCSLFSCENEEQVNKFILKNKSW 362 >gi|298675861|ref|YP_003727611.1| RNA methylase [Methanohalobium evestigatum Z-7303] gi|298288849|gb|ADI74815.1| RNA methylase, NOL1/NOP2/sun family [Methanohalobium evestigatum Z-7303] Length = 292 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 13/226 (5%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLE 277 G + VQ++ + IP + VLD+CAAPG KT+Q+ + + ++ A D+SK R+ Sbjct: 74 GKYHVQESVSGIPPLALNPIPYDRVLDMCAAPGSKTSQMSVLMENTGEILANDISKNRIR 133 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 L N+ RL ++E D + K FD VLVDAPCS+ G R++ D+L DT+ I Sbjct: 134 SLLSNVSRLGCVNVQVLERDGRNIPEKSKFDRVLVDAPCSAEGNARKNNDLLNGADTETI 193 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL--VPLNS 395 + + Q LL + K GG VV+S C+ +++E VV K L + +P + Sbjct: 194 TRISELQTSLLKKAFRLCKTGGTVVYSTCTFAPEENEIVVSKFLNHGKLEKPDLNLPHSL 253 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D + E IR+ P L+ G F +++ Sbjct: 254 GLSEWNDKKLGKELENCIRVYPHQLDSG--------GIFVAKFKKM 291 >gi|317486052|ref|ZP_07944905.1| ribosomal RNA small subunit methyltransferase B [Bilophila wadsworthia 3_1_6] gi|316922679|gb|EFV43912.1| ribosomal RNA small subunit methyltransferase B [Bilophila wadsworthia 3_1_6] Length = 364 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 142/391 (36%), Gaps = 52/391 (13%) Query: 73 SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR- 130 + + S++ ++ ++ ++LYLD + +A V AV+ + + +++ N +LR Sbjct: 2 KAPEKLPASMKLMIGIAAYELLYLDRIPAHASVSAAVDAVRARFG-QGLSRVANGVLRSL 60 Query: 131 --------------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + ++R++ +P W E YG E+ + A Sbjct: 61 IRLSESEDLKAFAFYESRIKDPMERLSVFHSVPRWMLELWTKGYGPEKAETFARAVSVVP 120 Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW------WVQDASA 230 + V + W + + + + + + + P + S Sbjct: 121 SPCVRVNAARDEWEALRDFLCKEGEAVGISGVRFAPGTQPEYMRDYLRQGRLSIQGAGSQ 180 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-DVSKRRLEKLRCNLDRLHLY 289 + L V D CA GGKT L+ G V A D + RL +R + RL L Sbjct: 181 LVLEALDAPRWEGPVWDACAGRGGKTLALVELGVPVLAASDTYQPRLRGMRDDAKRLVLK 240 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + A + + +L+D PCS GT+ RHPD+ R + QR++L Sbjct: 241 TPPLFCASAAEPALRGTPRTILLDVPCSGLGTLARHPDLRTLRTPGQVAGLVDLQRRILD 300 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 S++ GG + + C+++ ++E + L +P S Sbjct: 301 AVWSYLPSGGHLAYITCTMNPAENEGQIDAFLARTPGA--------------------SL 340 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + TPD G D + L++ Sbjct: 341 EKQWQSTPDAF--------GSDLMYGAMLKK 363 >gi|153824817|ref|ZP_01977484.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2] gi|153830903|ref|ZP_01983570.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39] gi|148873618|gb|EDL71753.1| NOL1/NOP2/sun family protein [Vibrio cholerae 623-39] gi|149741535|gb|EDM55565.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-2] Length = 503 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340 >gi|254226556|ref|ZP_04920138.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51] gi|125620892|gb|EAZ49244.1| NOL1/NOP2/sun family protein [Vibrio cholerae V51] Length = 503 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340 >gi|283954082|ref|ZP_06371607.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 414] gi|283794361|gb|EFC33105.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 414] Length = 292 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 27/304 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIR 204 R+E Y K+ + I + + + V E + + Sbjct: 1 MLSRIEKLYTKDEMQNILSSFAQEKNVCVFVNTLKSSVKELEEEFLKQGLKFRKINTYCY 60 Query: 205 LKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 L E + + S+ F E +++Q+ S+ + SVLD+CAAPGGK+ Sbjct: 61 LFEAKDKVILSSMKAFNEFKFYIQNYSSYLCALNLEVKAGQSVLDICAAPGGKSINLANF 120 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK R L+ NL + A + FD +L+DAPCS+ Sbjct: 121 MQNTGYLACNELSKDRFFTLQKNLKNYGVNAKIFMKNGKNIGNLCPLKFDKILLDAPCST 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ Sbjct: 181 FAKIGFDLE----KSYQEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236 Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + + L K+ + RI P + DGFF Sbjct: 237 NALKSEFKLELLDIDLEDVQAKAGHSEEFVEISKCRRILPSLDY---------DGFFIAK 287 Query: 438 LRRL 441 LR+L Sbjct: 288 LRKL 291 >gi|169351016|ref|ZP_02867954.1| hypothetical protein CLOSPI_01793 [Clostridium spiroforme DSM 1552] gi|169292078|gb|EDS74211.1| hypothetical protein CLOSPI_01793 [Clostridium spiroforme DSM 1552] Length = 440 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 24/298 (8%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKE 207 E+ K+ A + + + L Sbjct: 5 FEQRMQMLLKDEYQNFKAALLKKPIKAFYLNPKKKNVIQHLEYQYLTKHPYINDAYFYDY 64 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264 + P F G++++Q+ SA + +LD+CAAPGGKT + Sbjct: 65 DSYPLGKHPYFNCGLYYIQEPSAMAVASSVEFNKDDYILDMCAAPGGKTCYVASRLSDEG 124 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTI 322 + A D++K R E L N++R + + D + FD +++DAPCS G Sbjct: 125 LMIANDINKLRAEILSENIERFGITNTIVTNCDPVKLDKQFNCFFDKIILDAPCSGEGMF 184 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ + T D I A QR+L+ +K GI+++S C+ +++EE V ++ Sbjct: 185 RKLDTAIETWSIDKIYDCAKIQRRLINAAYKMLKDDGILIYSTCTYSLEENEEQVDYMI- 243 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +EL+ + K M+ + + +R+ P + + F L++ Sbjct: 244 -NELNMELLEIK----KQPGMSSGYNNDKVVRMYPHINKGEGQ--------FIALLKK 288 >gi|222834339|gb|EEE72816.1| predicted protein [Populus trichocarpa] Length = 359 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 144/368 (39%), Gaps = 39/368 (10%) Query: 97 DVADYAVVDLAVEQ-AKRDKENRHFAKLVNSILRRVSRE-KIELLQRIAGISIIPEWFKE 154 V + +V+ A + + + R + + P W+ Sbjct: 5 HVPAFTLVNRRWRLQAGAHARPVRLHQCLPAPFLRERDALVAATDDQPQAVWNHPAWWIA 64 Query: 155 RLENFYGKERVLAISDACISPLY-IDLT-VKFDIETWAHKLNA----VMLPTGGIRLKEL 208 RL + + P + + + D +++ L A + + Sbjct: 65 RLRKDHPDHWQAILQANNEQPPMTLRVNRQQTDRQSYQAALQAMDVPSLAVADSGLQLQQ 124 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLF------GTLNNLSVLDLCAAPGGKTAQLIVS 262 + SLPGF EG+ VQDA+A + L L VLD CAAPGGKTA L+ Sbjct: 125 ALPVQSLPGFDEGLASVQDAAAQLAAPLLLQGLEQPAGRALRVLDACAAPGGKTAHLLEY 184 Query: 263 GAKVT----ALDVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFD--YCPKKLFDAVLV 312 A T AL++ R ++ L RL L A ++ D + C + FDA+L+ Sbjct: 185 AAPQTLEVTALEIDAERAARIADTLGRLRLQARVVVADASRPDQWFDAQCGGQRFDAILL 244 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPC+++G +RR PDV W R D+ + A Q +LL ++PGG +++ CS+ +++ Sbjct: 245 DAPCTASGIVRRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTCSVFREE 304 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 E VQ + + L D A L+ DG Sbjct: 305 GEAQVQAFVTRNSEARTLAAPGHLIPGKADKAGMLADN---------------ALGDHDG 349 Query: 433 FFAVALRR 440 FF L++ Sbjct: 350 FFYALLQK 357 >gi|254286435|ref|ZP_04961393.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226] gi|150423602|gb|EDN15545.1| NOL1/NOP2/sun family protein [Vibrio cholerae AM-19226] Length = 503 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N+ R + + Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIQRCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340 >gi|329889247|ref|ZP_08267590.1| NOL1/NOP2/sun family protein [Brevundimonas diminuta ATCC 11568] gi|328844548|gb|EGF94112.1| NOL1/NOP2/sun family protein [Brevundimonas diminuta ATCC 11568] Length = 431 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 85/447 (19%), Positives = 147/447 (32%), Gaps = 50/447 (11%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 ++ + + R +L + + D+ + V LR R+ A + Sbjct: 13 IIDSISQGRQPADAVLKAWSQQNRYAG--SGDRRAIAERVYQVLRARGRLSAFMGGRQDG 70 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ-AKRDKENRHFAKLVNSILRRVS 132 L V L V D A ++ R +K Sbjct: 71 R----------ALIVGA-----LSVLDGATLEEIEGLYNGEGYGPRPLSKHERG------ 109 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH- 191 R +P++ L +R + +DL V T Sbjct: 110 RVMAGEDAVDLAEVALPDFVTADL-KAVHGDRWREEVEGLSGRAPVDLRVNSLRATMEEV 168 Query: 192 ----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + G E ++ L GF G + +QD ++ + L G Sbjct: 169 EVELRDAGLSPQRTELSGWGLRLDAEPAPNVQPLDGFQNGHFEIQDEASQVVGWLSGAFP 228 Query: 242 NLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED--IIEM 296 +V+D CA GGKT Q + + A DVS +RL+ ++ L R + A+ + Sbjct: 229 GATVVDYCAGGGGKTLGLVQAMQGQGALIACDVSAKRLDNVKPRLARAGVEADLRLLGTN 288 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D VLVDAPCS +G RR P+ W +++ + Q ++L Q V+ Sbjct: 289 GGGVEDLNGQADVVLVDAPCSGSGAWRRRPEDSWRLTAEEVARLHALQLRILGQATKLVR 348 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG + + CS+ + ++ + + L+ G R+T Sbjct: 349 PGGRLAYVTCSVLGA------ENEATAAAFEAAHLDFKPVPVADAAHSADLTEAGRERLT 402 Query: 417 P---DMLEKIDGVSSGMDGFFAVALRR 440 ++ ++G DGFF R Sbjct: 403 ALAQGNQLRLSPAATGTDGFFIALFER 429 >gi|319745008|gb|EFV97336.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae ATCC 13813] Length = 436 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 23/299 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ K+ A D+ E NA+ G Sbjct: 1 MKLPNEFIEK-YQTILKDEAEAFFDSFEQKPISAYRTNPLKEKQLDFPNAIPSTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +SI G + + Q+ +A I Q+ + VLDL AAPGGKT + + Sbjct: 60 KISGKSIEHTTG----LVYSQEPAAQIVAQIAEPQEGMKVLDLAAAPGGKTTHLLSYLNN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + + C FD ++ D PCS G Sbjct: 116 TGLLVSNEISNKRSKILVENVERFGARNVIVTNESSQRLAKCFNSFFDLIVFDGPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + D + A QR +L + I + GGI+V+S C+ +++EEVV + Sbjct: 176 MFRKDPQAIQYWHKDYPTECAQLQRDILKEAIKMLARGGILVYSTCTWSPEENEEVVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L+ +ELV + K M ++ R+ P + F LR Sbjct: 236 LQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEGQ--------FVAKLR 281 >gi|22537153|ref|NP_688004.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae 2603V/R] gi|25011082|ref|NP_735477.1| hypothetical protein gbs1028 [Streptococcus agalactiae NEM316] gi|76787905|ref|YP_329709.1| NOL1/NOP2/sun family RNA methylase [Streptococcus agalactiae A909] gi|76797787|ref|ZP_00780053.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae 18RS21] gi|22534016|gb|AAM99876.1|AE014237_10 NOL1/NOP2/sun family protein [Streptococcus agalactiae 2603V/R] gi|23095481|emb|CAD46687.1| Unknown, conserved protein [Streptococcus agalactiae NEM316] gi|76562962|gb|ABA45546.1| NOL1/NOP2/sun family putative RNA methylase [Streptococcus agalactiae A909] gi|76586863|gb|EAO63355.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae 18RS21] Length = 436 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 117/299 (39%), Gaps = 23/299 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ K+ A D+ E NA+ G Sbjct: 1 MKLPNEFIEK-YQTILKDEAEAFFDSFEQKPISAYRTNPLKEKQLDFPNAIPSTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +SI G + + Q+ +A I Q+ + VLDL AAPGGKT + + Sbjct: 60 KISGKSIEHTTG----LVYSQEPAAQIVAQIAEPQEGMKVLDLAAAPGGKTTHLLSYLNN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + + C FD ++ D PCS G Sbjct: 116 TGLLVSNEISNKRSKILVENVERFGARNVIVTNESSQRLAKCFNSFFDLIVFDGPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + D + A QR +L + I + GGI+V+S C+ +++EEVV + Sbjct: 176 MFRKDPQAIQYWHKDYPTECAQLQRDILKEAIKMLAHGGILVYSTCTWSPEENEEVVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L+ +ELV + K M ++ R+ P + F LR Sbjct: 236 LQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEGQ--------FVAKLR 281 >gi|18976541|ref|NP_577898.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus furiosus DSM 3638] gi|18892094|gb|AAL80293.1| putative nucleolar protein III (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 386 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L F +G ++ Q + + ++ ++D+ AAPGGKT+ + + ++ Sbjct: 168 SLSELKSFEKGYFYPQSLPSMVTSRVLEPKEEEIIIDMAAAPGGKTSHIAQLLQNRGEII 227 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D SK RL+K+ NL RL + +I+MDA + D +L+DAPC++ G P Sbjct: 228 AIDKSKNRLKKMEENLKRLGVKNVKLIQMDARNLPELGIKADKILLDAPCTALGV---RP 284 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + R DI +A +QR + I ++ GGI+V+S C+L +++E V+ +L+ Sbjct: 285 KLWELRTPKDIEATARYQRAFIWAAIKSLRKGGILVYSTCTLSYEENEGNVKFMLKK--- 341 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + R P GFF LR++ Sbjct: 342 -----GMKLEEQSLFIGSPGIGIDEVQRFYPH--------KHLTQGFFIAKLRKV 383 >gi|312869962|ref|ZP_07730101.1| NOL1/NOP2/sun family protein [Lactobacillus oris PB013-T2-3] gi|311094547|gb|EFQ52852.1| NOL1/NOP2/sun family protein [Lactobacillus oris PB013-T2-3] Length = 458 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 105/303 (34%), Gaps = 19/303 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F + + A + P V L+ + Sbjct: 1 MKLPDAFINK-YQHLLGDEAPAFLTSFDQPATGGFRVNPAKAAPTATLDRATGKVEYVPT 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 G + Q+ SA ++ VLDLCAAPGGKT + Sbjct: 60 GYRGAVDGKSLDHVAGAIYSQEPSAMYVGEVVAPQPGERVLDLCAAPGGKTTHLVAKMKD 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++ ++R L NL+R + D + FD +LVDAPCS G Sbjct: 120 QGLLVANEIFRKRALVLAENLERWGTAQTVVTNESPADLEKQFPQFFDRILVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + D + A QRK+L + +KPGG +V+S C+ ++ E+ + Sbjct: 180 MFRKEPAGMEYWTPDYPAECANRQRKILASALKMLKPGGTLVYSTCTFAPEEDEQNAAWL 239 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAV 436 L + P + +VP+ + R+ P + G F Sbjct: 240 LATYPG-LTMVPIKKYPGMDDGRPEWADGNPDLAKAVRLFPHHIAGE--------GHFIA 290 Query: 437 ALR 439 + Sbjct: 291 KFQ 293 >gi|297579072|ref|ZP_06941000.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385] gi|297536666|gb|EFH75499.1| NOL1/NOP2/sun family protein [Vibrio cholerae RC385] Length = 503 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340 >gi|153007105|ref|YP_001381430.1| Fmu (Sun) domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030678|gb|ABS28446.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. Fw109-5] Length = 414 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 93/439 (21%), Positives = 153/439 (34%), Gaps = 63/439 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L+ ++ ++D LS+ + + + + R+ A L Sbjct: 27 ALAEILA-GAPAERIVDRVLRADR--GLSREARRALAEALFGVGLWRRRLYAQLGD---- 79 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 A L + RD R A+ + + Sbjct: 80 --------------------------GAAPARLLLAALLRDLAGRDDAETLAELPPGALP 113 Query: 134 EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLTV-KFDIETWAH 191 +A + +P+W L G+E + + + + + A Sbjct: 114 PPRPPPGALADRASLPDWLAGELVAAAGEEAGALADALNLPGPLCLRVNLLRATPAVAAA 173 Query: 192 KLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 +L + G + + ++ L EG+ VQD + + L G S Sbjct: 174 RLAGEGVATRPGLLAPGCLVVASSRPNVYGLGAHREGLVEVQDEGSQLLGALVGARPGES 233 Query: 245 VLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD CA GGKT A + +V A+D RLE+LR R I+ +D Sbjct: 234 VLDACAGAGGKTLLLAAEVGPAGRVHAVDPDLARLERLRVRAARAGAA--GIVALDGAAP 291 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 D LVDAPCS G +RR PD+ W D Q ++L + + VKPGG + Sbjct: 292 AGGLRVDRALVDAPCSELGALRRGPDLRWRLDPAAFAALPPLQLEILERAAACVKPGGRL 351 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ C+ + + EEV R+ P +VP A ++ +G++R P Sbjct: 352 VYATCTFRRAEDEEVAIAFERAHPEWTRIVP--------SVGASTVTGDGFVRTWPH--- 400 Query: 422 KIDGVSSGMDGFFAVALRR 440 G DGFF +R Sbjct: 401 -----RHGTDGFFGAVWKR 414 >gi|229508549|ref|ZP_04398052.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX 330286] gi|229511380|ref|ZP_04400859.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae B33] gi|229518519|ref|ZP_04407962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae RC9] gi|229607954|ref|YP_002878602.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MJ-1236] gi|255745056|ref|ZP_05419006.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera CIRS 101] gi|262161657|ref|ZP_06030675.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae INDRE 91/1] gi|262169535|ref|ZP_06037226.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae RC27] gi|229343208|gb|EEO08183.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae RC9] gi|229351345|gb|EEO16286.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae B33] gi|229354503|gb|EEO19426.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae BX 330286] gi|229370609|gb|ACQ61032.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae MJ-1236] gi|255737527|gb|EET92922.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholera CIRS 101] gi|262021769|gb|EEY40479.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae RC27] gi|262028389|gb|EEY47044.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae INDRE 91/1] Length = 459 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 38 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 97 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 98 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 157 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 158 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 217 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 218 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 274 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 275 LHIFPQMYDCE--------GFFVAKIRKLA 296 >gi|146325709|sp|Q9KRY1|RSMF_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|257096823|sp|C3LMI5|RSMF_VIBCM RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 473 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 52 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 171 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 231 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 232 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 288 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|121535023|ref|ZP_01666841.1| putative RNA methylase, NOL1/NOP2/sun family [Thermosinus carboxydivorans Nor1] gi|121306436|gb|EAX47360.1| putative RNA methylase, NOL1/NOP2/sun family [Thermosinus carboxydivorans Nor1] Length = 458 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 117/311 (37%), Gaps = 23/311 (7%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML----- 198 +P F +R + A + P L V T A ++ Sbjct: 1 MHHDLPAAFCQR-MQALLADEFAAFYQSYEEPRTYGLRVNTLKITPAELVSLAPFALTPV 59 Query: 199 -PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + P A G++++Q+ SA L VLDL AAPGGK Sbjct: 60 PWATDGFYCLEEQRPGKHPYHAAGLYYIQEPSAMAAAPLLAPQPGEFVLDLAAAPGGKAT 119 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 + + A +V R + L N++RL + + + FD +LV Sbjct: 120 HLAAFMQGQGLLIANEVHPARAKILSENIERLGVKNCIVTNETPPRLAERFPAFFDRILV 179 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P D + A QR++L + +K GG +++S C+ ++ Sbjct: 180 DAPCSGEGMFRKDPAACQEWTQDAPRQCAARQREILADAVRMLKSGGWLLYSTCTFAPEE 239 Query: 373 SEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429 +EE+V +L + P V +P N + ++ + G +R+ P L Sbjct: 240 NEEIVDWLLAAYPDLAVVPLPHNHGFASAVPAWGGGRSDLAGAVRLWPHKLRGE------ 293 Query: 430 MDGFFAVALRR 440 G F LR+ Sbjct: 294 --GHFLALLRK 302 >gi|332158464|ref|YP_004423743.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2] gi|331033927|gb|AEC51739.1| nol1-nop2-sun family nucleolar protein III [Pyrococcus sp. NA2] Length = 388 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L F +G ++ Q + + ++ + ++D+ AAPGGKT + + ++ Sbjct: 170 SLSELKSFEKGYFYPQGLPSMVTARILEPREDDVIIDMTAAPGGKTTHIAQLLQNRGEII 229 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D SK RL+K+ NL RL + +I+MDA + D +L+DAPC++ G P Sbjct: 230 AIDKSKNRLKKMEENLKRLGVKNVKLIQMDARNLPDLGIKADKILLDAPCTALGV---RP 286 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + R I +A +QR + I +K GGI+V+S C+L +++E V+ +LR Sbjct: 287 KLWEERTPKHIEATARYQRAFIWAAIKSLKKGGILVYSTCTLSYEENEGNVKFMLRK--- 343 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++L + + + R P GFF LR++ Sbjct: 344 GMKLEDQSIFIGSP-----GIGIDKVQRFYPH--------KHLTQGFFIAKLRKV 385 >gi|301066545|ref|YP_003788568.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str. Zhang] gi|300438952|gb|ADK18718.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str. Zhang] Length = 443 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 18/301 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +PE FKE+ G E + A + + W + Sbjct: 1 MQLPEAFKEKYTRLLGDEAAAFL--ATFEAPAESGFRRDPAKPWPLDESLTEPIPWSPWG 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 + + A G+ + Q+ SA + VLDLCAAPGGK+ QL Sbjct: 59 YYGKVAGNDIDHVA-GLVYSQEPSAQFVGTVAAPKPGERVLDLCAAPGGKSTQLACYLGD 117 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + +++ R + L NL+R + D ++FD +LVDAPCS G Sbjct: 118 TGLLVSNEINGPRSKVLSGNLERWGTRQILVTNNDPDTLAKAWPQMFDRILVDAPCSGEG 177 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A Q+++L + + PGG +++S C+ ++ E+++ + Sbjct: 178 MFRKDPDATQYWHADYPAQCAERQKQILKAAVKMLAPGGTLIYSTCTFSPEEDEQIIAWL 237 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L ++ + + +PE +R+ P + G F L Sbjct: 238 LANNAFTLTPIKQYPGMEAGRPAWADGNPELAKTVRLFPHRVRGE--------GHFVAKL 289 Query: 439 R 439 + Sbjct: 290 K 290 >gi|308159767|gb|EFO62287.1| Nucleolar protein NOP2 [Giardia lamblia P15] Length = 502 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 75/375 (20%), Positives = 137/375 (36%), Gaps = 35/375 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ------RIAGI 145 ++ + ++ VD ++ R + + I+ Sbjct: 133 ELRHAEI-YDPRVDEVTNIEGIRGRVLRVVGVLADFKSRRHPDLSRMFYLELLRKDISAA 191 Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM----- 197 + + L +G A AC P + + V A L A Sbjct: 192 YGYSDGVIDILLGLFGPIDFHAFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDP 251 Query: 198 ---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ I + P + G + +QDA++ +P +LD+ AAPGG Sbjct: 252 LGDWCKDGLQIFSSQVPIGATPEYLRGYYMIQDAASFLPPMALNPKPGERILDMSAAPGG 311 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAV 310 KT L + + A D+++ R+ L+ NL R+ + I DA + FD V Sbjct: 312 KTTHLGALMQDSGMILANDMNRDRIPALQANLARMGVTCAVISCSDARELTQCTGNFDRV 371 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG---IVV-FSNC 366 L+DAPC+ G + + + R DD+ + + Q++LL + +V +S C Sbjct: 372 LLDAPCTGLGVVSKDASIKANRTFDDMHRLSHLQKELLNHAFDLLSKHPSSPRLVCYSTC 431 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEKID 424 S+ ++E V+ +L VE+V L ++ K ++ + P + Sbjct: 432 SVTLSENEAVIDYIL--HKRNVEVVDLPFSFGKP-----GITRFNGMSYHPAIRKARRFY 484 Query: 425 GVSSGMDGFFAVALR 439 GFF LR Sbjct: 485 PHIHNTHGFFICLLR 499 >gi|223938944|ref|ZP_03630830.1| Fmu (Sun) domain protein [bacterium Ellin514] gi|223892371|gb|EEF58846.1| Fmu (Sun) domain protein [bacterium Ellin514] Length = 375 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 154/440 (35%), Gaps = 83/440 (18%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ +++ + L E + +S D + V R+ +D Sbjct: 8 IAAKVIAKA-NRERPADAQLRTELR--GQKGVSPEDGRYISETVFAYYRWYGWLDR---- 60 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 ++ + QA++ L Sbjct: 61 -------------------------------SQSMEEQLRQARK--------------LN 75 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 R + + + +PEW K+ ++ + + L + Sbjct: 76 RAFLNEPASIPDSDFVKAVPEWTKDHVDVSTAW------LKSLQLEPKLWLRARPGKGRE 129 Query: 190 AHKLNAVMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + G L E + + P F G + +QD S+ + + + Sbjct: 130 LAEKLGECWIAGDGPLSETLEYEGSQDLFRTPEFHAGEFELQDISSQMVGLICAPNPGET 189 Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 D CA GGKT L + + + A D ++ RL++L+ R ++ + D Sbjct: 190 WWDACAGEGGKTLHLGDLMQNKGLIWASDRAEWRLKRLKLRAGRAKIFNYRSVIWDGGAK 249 Query: 302 CP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 P K F+ +L+DAPCS GT +R+P WT D+ + A Q++L+ + +KPGG Sbjct: 250 LPTKTKFNGILIDAPCSGVGTWQRNPHARWTTTLKDVQELAEVQKQLIAYAMPALKPGGK 309 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L ++++ EV ++ + P + +N + + SP+ Sbjct: 310 LVYSVCTLTREETSEVAAEISKRFPELKVMSLINPLKPGTTSEQIWFSPQEM-------- 361 Query: 421 EKIDGVSSGMDGFFAVALRR 440 G +G F A ++ Sbjct: 362 --------GGNGMFVCAWQK 373 >gi|15641511|ref|NP_231143.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587235|ref|ZP_01677009.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80] gi|121726919|ref|ZP_01680120.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52] gi|147674343|ref|YP_001217056.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae O395] gi|153822818|ref|ZP_01975485.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33] gi|227081661|ref|YP_002810212.1| Sun/nucleolar protein family protein [Vibrio cholerae M66-2] gi|254848624|ref|ZP_05237974.1| sun/nucleolar protein family protein [Vibrio cholerae MO10] gi|298498410|ref|ZP_07008217.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK 757] gi|9656005|gb|AAF94657.1| Sun/nucleolar protein family protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548578|gb|EAX58632.1| NOL1/NOP2/sun family protein [Vibrio cholerae 2740-80] gi|121630681|gb|EAX63068.1| NOL1/NOP2/sun family protein [Vibrio cholerae V52] gi|126519677|gb|EAZ76900.1| NOL1/NOP2/sun family protein [Vibrio cholerae B33] gi|146316226|gb|ABQ20765.1| NOL1/NOP2/sun family protein [Vibrio cholerae O395] gi|227009549|gb|ACP05761.1| Sun/nucleolar protein family protein [Vibrio cholerae M66-2] gi|227013417|gb|ACP09627.1| Sun/nucleolar protein family protein [Vibrio cholerae O395] gi|254844329|gb|EET22743.1| sun/nucleolar protein family protein [Vibrio cholerae MO10] gi|297542743|gb|EFH78793.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio cholerae MAK 757] Length = 503 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 127/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340 >gi|86151702|ref|ZP_01069916.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|86153222|ref|ZP_01071426.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|315124151|ref|YP_004066155.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841331|gb|EAQ58579.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|85842948|gb|EAQ60159.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|315017873|gb|ADT65966.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 292 Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 121/304 (39%), Gaps = 27/304 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208 R+E Y K+ + I + + + IE + L I Sbjct: 1 MLSRIEKLYTKDEMQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINAYCY 60 Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + S+ F E +++Q+ S+ + SVLD+CAAPGGK+ Sbjct: 61 LFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANF 120 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++S+ R L+ NL + A + + FD +L+DAPCS+ Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236 Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + + L + K+ RI P + DGFF Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287 Query: 438 LRRL 441 LR+L Sbjct: 288 LRKL 291 >gi|258625050|ref|ZP_05719971.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603] gi|258582683|gb|EEW07511.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM603] Length = 473 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 + +L+ V G + E + + G++++Q+AS+ +PV Sbjct: 52 FCQRVAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 171 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + D I A Q+ L+ Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 231 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L +++++EV + ++ V L++ + ++ ++AL+ EG+ Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 288 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|153214766|ref|ZP_01949595.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587] gi|124115108|gb|EAY33928.1| NOL1/NOP2/sun family protein [Vibrio cholerae 1587] Length = 503 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 23/276 (8%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 142 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR---LIQPK 445 + I P M + GFF +R+ + P+ Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKQASVPTPE 346 >gi|258622869|ref|ZP_05717885.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573] gi|258584808|gb|EEW09541.1| NOL1/NOP2/sun family protein [Vibrio mimicus VM573] Length = 473 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L+ V G + E + + G++++Q+AS+ +PV Sbjct: 52 FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 171 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + D I A Q+ L+ Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 231 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L +++++EV + ++ V L++ + ++ ++AL+ EG+ Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 288 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|224542044|ref|ZP_03682583.1| hypothetical protein CATMIT_01218 [Catenibacterium mitsuokai DSM 15897] gi|224524977|gb|EEF94082.1| hypothetical protein CATMIT_01218 [Catenibacterium mitsuokai DSM 15897] Length = 437 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI----RLKEL 208 + K+ A + L + + + L + I L + Sbjct: 4 FDARMKSLLKDEYDDFKKALLEKPVKGLYLNRNKKNVERVLEEQYIEHHPIVENGYLYDE 63 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAK 265 F G++++Q+ SA + + VLD+CAAPGGK+ ++ Sbjct: 64 NYHPGRSAYFLAGLYYIQEPSAMLVADALPIEPDDFVLDMCAAPGGKSCEIASRLTGEGV 123 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323 + A D+ R L N++R L + +D + + FD +++DAPCS G R Sbjct: 124 LIANDIEASRARILSENIERFGLDNTIVTNVDPMRFTKQFQEAFDKIVLDAPCSGEGMFR 183 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + + T D +++ A Q+ LL +K GG+V++S C+ +++E +V + Sbjct: 184 KLEQAVDTWSEDKVLECAHIQKNLLKGAYDMLKQGGMVIYSTCTYSYEENEAMVHYAVDE 243 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + EL+PL+ KS + + + +R P G F LR+ Sbjct: 244 --LGFELLPLS----KSHGLCPGVDLDEVVRCYPHHYRGE--------GHFIALLRK 286 >gi|311251116|ref|XP_003124450.1| PREDICTED: putative methyltransferase NSUN5-like [Sus scrofa] Length = 466 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 84/409 (20%), Positives = 157/409 (38%), Gaps = 29/409 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGRGFKGHGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ + S +P + + ++ V Sbjct: 93 PLLDRHQARLKAELARLKVRRGVSRNEDLLEVGSKSDPASQVPRFVRVNTLKTRSEDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + DI K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQGQA-SSLEDIRALKGKCFLLDPLLPELLVFPAQTDLHEHPLYQAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DKASCLPAVLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P + +L+D CS +G + R + + Sbjct: 272 ARAGVSCCELAEQDFLAVAPTDQRYRQVQYILLDPSCSGSGMLTRRLEEPGAGAPSQERL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VVQ L+ SP L P+ Sbjct: 332 RALAGFQQRALSHALTFPALR---RLVYSTCSLCQEENEDVVQAALQQSPGAFRLAPVLP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + W + E +R +PD GFF L R+ P Sbjct: 389 S-WPHRGLGTFPGAEHCLRASPDTTL--------TGGFFIAVLERVEVP 428 >gi|301776202|ref|XP_002923528.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN5-like [Ailuropoda melanoleuca] Length = 494 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 88/453 (19%), Positives = 168/453 (37%), Gaps = 35/453 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M ++ +L+ V ++ S+ L+ A + A+V T R+ +D Sbjct: 1 MALYATAASVLAGVESRQGSIKGLVYASSFQVAGSGSE------LYALVCETQRYSAVLD 54 Query: 65 AVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK-RDKENRHFAK 122 AV+ L+ + + + L ++L V ++L + R + A+ Sbjct: 55 AVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWKPLLDRHRARLKAELAR 111 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 L + + +E+ R S +P + + + V S + Sbjct: 112 LKVQRCVSRNEDLLEVGSRPGTASQVPRFVRVNTLKTNSDDAVDYFKRQGFSYQG-RASS 170 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 D+ K + + + + P + G +QD ++ +P L Sbjct: 171 LEDLRGLKGKCFLLDPLLPELLVFPAQTDLHDHPLYRAGHLILQDKASCLPATLLAPPPG 230 Query: 243 LSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 ++D CAAPG KT+ L + K+ A D+ RL + L R + ++ E D Sbjct: 231 SHIIDACAAPGNKTSHLAALLKNQGKIFAFDLDAGRLASMATLLARAGVSCCELAEQDFL 290 Query: 300 DYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI--VKSACFQRKLLLQGIS 353 P + +L+D CS +G R + A FQ++ L ++ Sbjct: 291 AVSPSDQRYRQVQYILLDPSCSGSGMPARQLEEPGAGTPSQARLQALAGFQQRALRHALT 350 Query: 354 F--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 F ++ +V+S CSL ++++E+VVQ L+ +P L P+ + W + E Sbjct: 351 FPSLQ---RLVYSTCSLCQEENEDVVQDALQQNPGTFRLAPVLPS-WPHRGLGTFPGAEH 406 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +R +P+ GFF L R+ P Sbjct: 407 CLRASPETTL--------TGGFFVAVLERVEVP 431 >gi|209695043|ref|YP_002262972.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Aliivibrio salmonicida LFI1238] gi|226725332|sp|B6ELC0|RSMF_ALISL RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|208008995|emb|CAQ79223.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 473 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 121/264 (45%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241 E +L+ V G + + S G++++Q+AS+ +PV N Sbjct: 57 EEKQWQLDPVPWCDTGFWITRQESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDN 116 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 LD+ +APG KT Q + + + A + S R++ L N+ R + + D Sbjct: 117 IEMALDMASAPGSKTTQLAAGMKNKGALVANEYSSSRVKILCSNVQRCGVSNVALTHFDG 176 Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD++L+DAPCS GTIR+ PD + + +++ QR L+ +K Sbjct: 177 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIKSAFHALK 236 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG++V+S C+L+ ++++ + ++ V PL + + AL+ EG++ I Sbjct: 237 PGGVMVYSTCTLNHEENQNICHHLVTEFGDAVTFEPLGDLFE---NAEKALTKEGFLHIY 293 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF +R+ Sbjct: 294 PQIFDSE--------GFFVAKIRK 309 >gi|262171479|ref|ZP_06039157.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus MB-451] gi|261892555|gb|EEY38541.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus MB-451] Length = 473 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L+ V G + E + + G++++Q+AS+ +PV Sbjct: 52 FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 171 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + D I A Q+ L+ Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 231 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L +++++EV + ++ V L++ + ++ ++AL+ EG+ Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 288 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|269967589|ref|ZP_06181641.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B] gi|269827827|gb|EEZ82109.1| NOL1/NOP2/sun family protein [Vibrio alginolyticus 40B] Length = 518 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 ET KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 97 ETKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 156 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 157 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAALSNFDGR 216 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + ++ A Q+ L+ +KP Sbjct: 217 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIESAFHALKP 276 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + + AL+ EG++ I P Sbjct: 277 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLENLFE---NAEAALTEEGFLHIFP 333 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 334 QVYDCE--------GFFVARIRKLA 350 >gi|332072564|gb|EGI83047.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae GA17570] Length = 262 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 22/276 (7%) Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + I +T E L A L + FA G +QD S+ Sbjct: 1 MRNKASIRVTDLSRKEEIQALLEANNSLLATTGLVKEQGHFAGHNLFANGAITIQDESSQ 60 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQL--IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + VLD CAAPGGKTA + ++ +VTALD+ +L+ ++ N RL + Sbjct: 61 LVAPTLDLQGDERVLDACAAPGGKTAHIASYLTTGQVTALDLYDHKLDLIQENAQRLGVE 120 Query: 290 A-EDIIEMD---AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++D ++ + FD +LVDAPCS G +RR PD+ + ++T D Q Sbjct: 121 DRVQTQKLDARKVHEFFDQDSFDKILVDAPCSGIGLLRRKPDIKYNKETADFASLQEIQL 180 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++L + GGI+ +S C++ +++ +VV+ L S P K Sbjct: 181 EILGSVCQILGKGGIITYSTCTIVSEENFQVVKAFLESHPEF--------EQVKLEHECK 232 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +G I ITP++ G DGFF R++ Sbjct: 233 DIMKDGCILITPELY--------GSDGFFISQFRKI 260 >gi|229529456|ref|ZP_04418846.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae 12129(1)] gi|229333230|gb|EEN98716.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae 12129(1)] Length = 459 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 +L V G + E + + G++++Q+AS+ +PV G + Sbjct: 43 AEKEWQLTPVPWCDNGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHY 102 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD+ AAPG KT Q+ + + + A + S R++ L N++R + + D Sbjct: 103 DTVLDMAAAPGSKTTQIAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALSNFDGC 162 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ +K Sbjct: 163 VFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAFQALKV 222 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG++ I P Sbjct: 223 GGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGFLHIFP 279 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 M + GFF +R+L Sbjct: 280 QMYDCE--------GFFVAKIRKLA 296 >gi|164687686|ref|ZP_02211714.1| hypothetical protein CLOBAR_01328 [Clostridium bartlettii DSM 16795] gi|164603460|gb|EDQ96925.1| hypothetical protein CLOBAR_01328 [Clostridium bartlettii DSM 16795] Length = 432 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 116/305 (38%), Gaps = 39/305 (12%) Query: 148 IPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTVK-FDIETWAH----KLNAVMLPTG 201 +PE F E ++ E I + L E + L + Sbjct: 4 LPEKFLEDVKVILQDEYEEFIDSYNENKTTGLRLNTMKMSKEKFQELNLFDLEQIPWTNE 63 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258 G E P GV+++Q+ SA V VLD+CAAPGGK+ Sbjct: 64 GFYYDESVCKPGKNPLHEAGVYYLQEPSAMSVVPKLDIQKGDRVLDMCAAPGGKSTYILS 123 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPC 316 + + + +++ R+ L NL+R I D+ FD +++DAPC Sbjct: 124 QLDDTGLLVSNEINPIRINALGENLERFGARNCIITNTDSTRLRKAFTGYFDKIVIDAPC 183 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G R+ P + +++ Q++++ G +K GGI+V+S C+ ++++E+V Sbjct: 184 SGEGMFRKDPVAIQDWTYSKVLECQSIQKEIIRDGYKMLKKGGILVYSTCTFSREENEDV 243 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 +++ + + V + R+ P ++ G F Sbjct: 244 IEEFIAENEGAVLIEKE--------------------RLWPHKIKGE--------GHFVA 275 Query: 437 ALRRL 441 +++L Sbjct: 276 KIQKL 280 >gi|159118308|ref|XP_001709373.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803] gi|157437489|gb|EDO81699.1| Nucleolar protein NOP2 [Giardia lamblia ATCC 50803] Length = 502 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 75/375 (20%), Positives = 136/375 (36%), Gaps = 35/375 (9%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ------RIAGI 145 ++ + ++ VD ++ R + + I+ Sbjct: 133 ELRHTEI-YDPRVDEVTNIEGIRGRILRVVGVLADFKSRRHPDLSRMFYLELLKKDISVA 191 Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM----- 197 + + L +G A AC P + + V A L A Sbjct: 192 YGYSDGVIDILLGLFGPIDFHAFITACEKPRPLTIRVNSLKVKRRQLAQMLIARGVNLDP 251 Query: 198 ---LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 G+++ I + P + G + +QDA++ +P +LD+ AAPGG Sbjct: 252 LGDWCKDGLQIFSSQVPIGATPEYLRGYYMIQDAASFLPPMALSPKPGERILDMSAAPGG 311 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAV 310 KT L + + A D+++ R+ L+ NL R+ + I DA + FD V Sbjct: 312 KTTHLGALMQDSGMILANDMNRDRIPALQANLARMGVTCAVISCSDARELAQCTGNFDRV 371 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG---IVV-FSNC 366 L+DAPC+ G + + + R +DI K + Q++LL + +V +S C Sbjct: 372 LLDAPCTGLGVVSKDASIKANRTFEDIHKLSHLQKELLKCAFDLLAKHPSSPRLVCYSTC 431 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP--DMLEKID 424 S+ ++E V+ +LR+ + V +P N ++ + P + Sbjct: 432 SVTLSENEAVIDCILRTRNVEVVDLPFNFGKP-------GITRFNGVSYHPSIQKARRFY 484 Query: 425 GVSSGMDGFFAVALR 439 GFF LR Sbjct: 485 PHIHNTHGFFICLLR 499 >gi|312881594|ref|ZP_07741372.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus ATCC BAA-2122] gi|309370657|gb|EFP98131.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio caribbenthicus ATCC BAA-2122] Length = 474 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 128/298 (42%), Gaps = 18/298 (6%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 + + + +I + D + W + + L E Sbjct: 24 KMDDFISACQRPLRKSIRVNTLKSSISDFMTLAKAKGWHIEQIPWCKDGFWVDLDEEQTP 83 Query: 212 IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKV 266 + S G++++Q+AS+ IPV + SVLD+ AAPG KT Q+ + + + Sbjct: 84 LGSTAEHLSGLFYIQEASSMIPVSALFSDSTKLQSVLDMAAAPGSKTTQIAALMGNKGVL 143 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRR 324 A + S R++ L N++R + + D + + FDAVL+DAPCS GT+R+ Sbjct: 144 IANEYSASRVKALHANIERCGIRNTALSNFDGEVFGSWLPEAFDAVLIDAPCSGEGTVRK 203 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 L I A Q+KL+ +KPGG +V+S C+L ++++ V + + Sbjct: 204 DDSALKNWSLKSIQSIADTQKKLIESAFHALKPGGTLVYSTCTLSLEENQFVCRHLKDKF 263 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 VE L+ + + +++ EG++ + P + + GFF L+++ Sbjct: 264 ADSVEFESLSHLFP---GASESVTDEGFLHVFPQVYDSE--------GFFVAKLKKVA 310 >gi|77405710|ref|ZP_00782797.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae H36B] gi|77175706|gb|EAO78488.1| NOL1/NOP2/sun family protein [Streptococcus agalactiae H36B] Length = 436 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 23/299 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ K+ A D+ E NA+ G Sbjct: 1 MKLPNEFIEK-YQTILKDEAEAFFDSFEQKPISAYRTNPLKEKQLDFPNAIPSTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +SI G + + Q+ +A I Q+ + VLDL AAPGGKT + + Sbjct: 60 KISGKSIEHTTG----LVYSQEPAAQIVAQIAEPQEGMKVLDLAAAPGGKTTHLLSYLNN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + + C FD D PCS G Sbjct: 116 TGLLVSNEISNKRSKILVENVERFGARNVIVTNESSQRLAKCFNXFFDLXXFDGPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + D + A QR +L + I + GGI+V+S C+ +++EEVV + Sbjct: 176 MFRKDPQAIQYWHKDYPTECAQLQRDILKEAIKMLAHGGILVYSTCTWSPEENEEVVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L+ +ELV + K M ++ R+ P + F LR Sbjct: 236 LQEY-DYLELVDI----PKLNGMVEGINVPQVARMYPHHFQGEGQ--------FVAKLR 281 >gi|254518589|ref|ZP_05130645.1| tRNA/rRNA cytosine-C5-methylase [Clostridium sp. 7_2_43FAA] gi|226912338|gb|EEH97539.1| tRNA/rRNA cytosine-C5-methylase [Clostridium sp. 7_2_43FAA] Length = 319 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 21/242 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 ++ L + G ++Q+ S+ +P +L VLD+CAAPGGK+ + + A + Sbjct: 84 NLRRLEAYKYGKIYLQNLSSMLPPLFLDLKEDLVVLDMCAAPGGKSLYMADLTKNKATIL 143 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRH 325 A DV++ R E+L N+++ + ++ D + K FD VL+D PCS G I Sbjct: 144 ANDVNEIRRERLNYNIEKQGANSIIVLGADGCSIGKRLNKYFDRVLLDVPCSGEGIITLK 203 Query: 326 PDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 ++ + + + Q++L + +KPGGI+V+S C+L+ ++EEV++ L Sbjct: 204 SSKVYKGWNEKKVALCSKLQKRLFDSAYNALKPGGIMVYSTCTLNPFENEEVIEYALNKY 263 Query: 385 PI------PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 P +EL + K + + IRI P+ M+GFF L Sbjct: 264 PDLRLEKINLELPNVIRGLSKYKEKIYSEEITKSIRIIPN---------ENMEGFFIAKL 314 Query: 439 RR 440 + Sbjct: 315 VK 316 >gi|153801173|ref|ZP_01955759.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3] gi|124123293|gb|EAY42036.1| NOL1/NOP2/sun family protein [Vibrio cholerae MZO-3] Length = 503 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ IPV Sbjct: 82 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMIPVSALFM 141 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G VLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 142 GDAEYDCVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 201 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 202 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKALIESAF 261 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L ++++++V + ++ V L + + + ++AL+ EG+ Sbjct: 262 QALKVGGTLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 318 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 319 LHIFPQMYDCE--------GFFVAKIRKLA 340 >gi|327284099|ref|XP_003226776.1| PREDICTED: putative methyltransferase NSUN5-like [Anolis carolinensis] Length = 475 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 86/443 (19%), Positives = 167/443 (37%), Gaps = 35/443 (7%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +LS + ++ SL L+ R R L+ A+V+ TLRF P ++A+L+ Sbjct: 20 AAAASVLSGLEQRSGSLKALV------YGSRFPGPR---LLLALVSETLRFGPVLEALLE 70 Query: 69 FV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L+ + + L ++L +L+ A R + A+L Sbjct: 71 ASGLLRAEKKLPPHLAKVL---AYDLLFGKGLRGGGPWKAPLLKHRARLQAELARLKVRR 127 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 + + G +P + + + V + Sbjct: 128 GVSRDEDLLPPPAGGGGNGTLPRYVRVNTIKTRFDDAVDYFKRQGFVYQGRASPEMKGVA 187 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + K + G+ + + + G +QD ++ +P L VLD Sbjct: 188 SLSGKTFLLDPHLPGVLIFPPGTDLHEDQLYKAGHVILQDKASCLPAFLLNPTPGSHVLD 247 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 CAAPG KT+ ++ + ++ A D+ +RL + L R + ++ D P Sbjct: 248 ACAAPGNKTSHLAAIMGNKGRIFAFDLDAKRLATMSTMLARAGVTCHNLAHQDFLATDPG 307 Query: 305 KLF----DAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISF--VKP 357 + +L+D CS +G + R + D + A FQR++L + F ++ Sbjct: 308 DPKYSHVEYILLDPSCSGSGIVGRLPYEEEERMDAQRLQALAGFQRRMLGHALKFPALR- 366 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 +V+S CSL ++++EEVV+ VL LV + W + + + +R +P Sbjct: 367 --RLVYSTCSLHQEENEEVVRDVLEQHGRDFRLVEALPS-WTPRGLGVFAEAKCCLRASP 423 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + +GFF + R Sbjct: 424 --------KETLTNGFFVAVMER 438 >gi|293396403|ref|ZP_06640681.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera DSM 4582] gi|291421192|gb|EFE94443.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Serratia odorifera DSM 4582] Length = 479 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 125/263 (47%), Gaps = 20/263 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242 + + +L + G + +++ S G++++Q+AS+ +PV + Sbjct: 59 KDYDWQLAPIPWCAEGFWITRDDDALRLGSAAEHLSGLFYIQEASSMLPVSALFSAGETP 118 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLD+ AAPG KT Q+ + + + A + S R++ L NL R + + D Sbjct: 119 RRVLDVAAAPGSKTTQIAALMNNRGGIVANEYSASRVKVLHANLSRCGVKNAALTHFDGR 178 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FDA+L+DAPCS G +R+ PD + + + A QR+L+ + P Sbjct: 179 VFGAALPESFDAILLDAPCSGEGVVRKDPDAMSNWSPESVHSIAETQRQLIDSAFHALAP 238 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L+ Q++++V+ +L + V + PL + AL+ EG++ + P Sbjct: 239 GGVMVYSTCTLNAQENQQVINSLLANYGSAVSVEPLGDLFP---GAHQALTDEGFLHVFP 295 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 296 QIYDSE--------GFFVARLRK 310 >gi|262165707|ref|ZP_06033444.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus VM223] gi|262025423|gb|EEY44091.1| ribosomal RNA small subunit methyltransferase F [Vibrio mimicus VM223] Length = 492 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 128/270 (47%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L+ V G + E + + G++++Q+AS+ +PV Sbjct: 71 FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 130 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 131 DHAQYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALT 190 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + D I A Q+ L+ Sbjct: 191 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKALIESAF 250 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L +++++EV + ++ V L++ + ++ ++AL+ EG+ Sbjct: 251 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLDNLFEQA---SLALTEEGF 307 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 308 LHIFPQMYDCE--------GFFVAKIRKLA 329 >gi|227529123|ref|ZP_03959172.1| tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227350967|gb|EEJ41258.1| tRNA/rRNA methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 455 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 105/286 (36%), Gaps = 17/286 (5%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEG 221 + A A V + K + + G Sbjct: 17 DEAPAFLAALNEQSLSGFRVNPLKDGLPQKTISQAKGKMPYVPTGYYGQVNGKSLDHVTG 76 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 + Q+ SA ++ VLDLCAAPGGK+ L + + A ++ ++R Sbjct: 77 WVYSQEPSAMYVGEVVDPQPGERVLDLCAAPGGKSTHLISLMKDQGLLVANEIFRKRALI 136 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 L NL+R + + FD +L+DAPCS G R+ P + +TD Sbjct: 137 LAENLERWGTRNTVVTNESPEKLEKQFPKFFDRILIDAPCSGEGMFRKEPAGIEYWNTDY 196 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNS 395 + A Q+K++ I +KPGGI+V+S C+ ++ E+ +L++ +E V Sbjct: 197 PAECANRQQKIIASAIKMLKPGGILVYSTCTFAPEEDEQNASWILKNYSEMQMEEVKAYP 256 Query: 396 AYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +PE IR+ P ++ G F R Sbjct: 257 GMDHGRPEWADGNPELAKAIRLFPHHIKGE--------GHFVAKFR 294 >gi|205373322|ref|ZP_03226126.1| sun protein [Bacillus coahuilensis m4-4] Length = 267 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 96/268 (35%), Gaps = 25/268 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M N R + +L V + + LL+ + D L+ + +++ Sbjct: 1 MSK--NVREAALEVLEQVEKNQSYSNLLLNHTIEKY---EIKGPDVGLLTELTYGSIQRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L + + ++ LL +S+ Q+LYLD V + A + AVE AK+ + ++ Sbjct: 56 MTLDYYLKPFIRKKVEN---WVRLLLHLSLYQMLYLDRVPERAAIHEAVEIAKK-RGHKG 111 Query: 120 FAKLVNSILRRVSR-------EKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A LVN ILR + R E +RI+ + P W R +G+E+ ++ + Sbjct: 112 IAGLVNGILRSIQREGVPSLDEISNEEERISIETSHPLWLVNRWSKQFGREKTRSMCETN 171 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVML--------PTGGIRLKELPESIVSLPGFAEGVWW 224 + T LN + + L ++ + EG Sbjct: 172 VQAPLQSARTNLTKATRDEVLNMLQDEGLDVRASEMIPEGIVSLKGNLAKSKAYKEGYIT 231 Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAP 252 VQD S+ + P Sbjct: 232 VQDESSMAVAYAIDLQKETNDTRCMCCP 259 >gi|262402183|ref|ZP_06078744.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586] gi|262350965|gb|EEZ00098.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC586] Length = 473 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 72/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L+ V G + E + + G++++Q+AS+ +PV Sbjct: 52 FCQRAAEKNWQLSPVPWCENGFWIEADESQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G VLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 GDAEYDCVLDMAAAPGSKTTQMAALMENQGVLVANEFSASRVKVLHANIERCGIRNTALT 171 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + D I A Q+ L+ Sbjct: 172 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAINSIASTQKALIESAF 231 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L +++++EV + ++ V L + + + ++AL+ EG+ Sbjct: 232 QALKVGGTLVYSTCTLSREENQEVCWHLKQTYGDAVSFESLGNLFEHA---SIALTDEGF 288 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 289 LHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|160331223|ref|XP_001712319.1| nop2 [Hemiselmis andersenii] gi|159765766|gb|ABW97994.1| nop2 [Hemiselmis andersenii] Length = 366 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 24/314 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA-----------HKLN 194 E+ N E + + +P + + + K+ Sbjct: 56 YNYSIDLVEKFFNIIPMEEIDEFFKSNETPRPLTIRINSIRNGEENFQNNLRNMGIQKIF 115 Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 L +K + P F G + +Q S+ V +L++ AAPGG Sbjct: 116 EEKLLNFAGIIKRKNIRLGKNPEFLAGYFTLQGLSSFFSVIALDPQKGERILEIAAAPGG 175 Query: 255 K---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAV 310 K +Q++ + A D +K RL L + RL + + D + K FD V Sbjct: 176 KATFISQIMENTGICIANDKNKSRLNSLVSTIHRLGIENSIVTNFDGSFFHYKMKGFDRV 235 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNC 366 L+DAPC+ TG I + + I+ + Q++LL+ I K G +V+S C Sbjct: 236 LLDAPCTGTGIISHDERIKLHKINSAILINTTLQKRLLISAIDSCKINQEKKGYIVYSTC 295 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ +++E ++Q + + + L+ + + + + Sbjct: 296 SILIEENESIIQYAVEKRNVKIVKTGLSFGIPGFVKYKNEIFNKKM-----HFCRRFYPH 350 Query: 427 SSGMDGFFAVALRR 440 +DGFF L + Sbjct: 351 IHNVDGFFVCKLEK 364 >gi|7228247|emb|CAB77061.1| putative protein [Arabidopsis thaliana] gi|7269512|emb|CAB79515.1| putative protein [Arabidopsis thaliana] Length = 626 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 101/244 (41%), Gaps = 35/244 (14%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + I + P + G + +Q AS+ +PV V+D+ AAPGGKT + + Sbjct: 306 VYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMK 365 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 + + A ++ RL+ L NL R+ + + D + Sbjct: 366 NTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGRE--------------------V 405 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVV 377 I + V ++ DDI K A Q++L+L I V K GG +V+S CS+ ++E V+ Sbjct: 406 ISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPENEAVI 465 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L++ + + L+ + S E R P + MDGFF Sbjct: 466 DYALKNRDVKLVPCGLDFGRPGFREHRFHPSLEKTRRFYPHV--------HNMDGFFVAK 517 Query: 438 LRRL 441 L+++ Sbjct: 518 LKKM 521 >gi|315058050|gb|ADT72379.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni S3] Length = 292 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 27/304 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208 R+E Y K+ + I + + + IE + L I Sbjct: 1 MLSRIEKLYTKDEMQNILSSFTQEKNVCVFTNTLKISIEELEKEFLKQKLKFKKINAYCY 60 Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + S+ F E +++Q+ S+ + VLD+CAAPGGK+ Sbjct: 61 LFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANF 120 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++S+ R L+ NL + A + + FD +L+DAPCS+ Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIE 236 Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + + L + K+ RI P + DGFF Sbjct: 237 NALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287 Query: 438 LRRL 441 LR+L Sbjct: 288 LRKL 291 >gi|220915419|ref|YP_002490723.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953273|gb|ACL63657.1| Fmu (Sun) domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 437 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 90/442 (20%), Positives = 145/442 (32%), Gaps = 50/442 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + V + L+ L ++ V V LR ++D +L Sbjct: 18 ALVLEVHGLVHDQGWLADRALERVLRRER--ALWANERRAVAEAVYGILRAQGQLDFLLG 75 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 S P L+R +A QA A + Sbjct: 76 ----GSPPLATRYAAWLVR---------------AAGVAPAQAAARLGASPRALAGLAEA 116 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK----- 183 + L R A + +P W ERL + G+ +++ + + Sbjct: 117 DARVAAIPDPLDRFAVEASLPRWIAERLVSELGEAEARSLAAVLNRRAPLTVRANALAGD 176 Query: 184 ---FDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 A + A L + ++ +L F G + +QD + + G Sbjct: 177 RDALRAALAAEGVPAEPTRFSPWGLTLDGHQNAFALEAFRTGGFEIQDEGSQLIALACGA 236 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--- 293 V+D CA GGK A + + + ALD RLE R R H++ Sbjct: 237 RPGQVVVDACAGAGGKSLALAAEMHNKGSLHALDSDAGRLEDARRRARRAHVHNLRTRVV 296 Query: 294 ---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 E +A D VLVDAPCS GT+RR PD W D + A QR+LL + Sbjct: 297 PAGPEAEAAVADLAGKADVVLVDAPCSGLGTLRRKPDARWRLQPGDPERFAAIQRELLGR 356 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +PGG VV++ C++ + +++EV + + PL A+ Sbjct: 357 FSRLARPGGRVVYATCAMGRTENDEVADY--AERELGLAPAPLAPFLGAERARALGAGES 414 Query: 411 GWIRITPDMLEKIDGVSSGMDG 432 + G DG Sbjct: 415 RC---------ALYPHRHGTDG 427 >gi|73957768|ref|XP_536846.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 isoform 1 [Canis familiaris] Length = 469 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 84/453 (18%), Positives = 170/453 (37%), Gaps = 38/453 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M ++ +L+ V +R S+ L+ + + + A+V T R+ +D Sbjct: 1 MALYATAASVLANVESRRGSIKGLVYASSFQNVKQ---------LYALVCETQRYSAVLD 51 Query: 65 AVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH-FAK 122 AV+ L+ + + + L ++L V ++L + + A+ Sbjct: 52 AVIASAGLLRAEKKLRPHLAKVL---VYELLLGRGFRGGGGRWKPLLDRHQARLKAELAR 108 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 L + + +++ R S +P + + + + S + Sbjct: 109 LKVQRRVSRNEDLLQVGSRPGAASQVPRFVRVNTLKTSSDDAIDYFKRQGFSYQG-RASS 167 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 D+ K + + + + P + G +QD ++ +P L Sbjct: 168 LEDLRALKGKCFLLDPLLPELLVFPTQTDLHDHPLYQAGHLILQDKASCLPAMLLAPPPG 227 Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 V+D CAAPG KT+ + + ++ A D+ RL + L R + ++ + D Sbjct: 228 SHVIDACAAPGNKTSHLAAFLKNQGRIFAFDLDAGRLASMATLLARAGVSCCELAQEDFL 287 Query: 300 DYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI--VKSACFQRKLLLQGIS 353 P + +L+D CS +G R + T A FQ++ L ++ Sbjct: 288 AVSPSDQRYRQVQYILLDPSCSGSGMPTRQLEEPGTGTPSKARLQALAGFQQRALRHALT 347 Query: 354 F--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 F ++ +V+S CSL ++++E+VVQ L+ +P L P+ + W ++ E Sbjct: 348 FPSLQ---RLVYSTCSLCQEENEDVVQDALQQNPGTFRLAPVLPS-WPHRGLSSFPGAEH 403 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +R +P+ GFF L R+ P Sbjct: 404 CLRASPETTL--------TGGFFVAVLERVEVP 428 >gi|20094111|ref|NP_613958.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19887109|gb|AAM01888.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 307 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 120/304 (39%), Gaps = 16/304 (5%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN---------AVMLPT 200 E F+ERLE +G + V + A + Sbjct: 5 EEFRERLERIFGDRAEDVYRYLLEGRPPTYVRVNTLKADVEEVVENLETAGVELAETPLS 64 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 R+ P + S G ++QD ++ +P +L V+DLCAAPG KT QL Sbjct: 65 YAFRVLSSPGPLGSSLEHVAGYLYLQDLASMVPPELLDPEPPGPVIDLCAAPGSKTTQLA 124 Query: 261 V---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 V A+D RR+ L N++RL + DA F +L+D PCS Sbjct: 125 QLLGGEGVVLAVDADPRRVRALVHNVNRLGCVNVIVAHADAARLRISAPF--LLLDPPCS 182 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 GT+ R P L T + A Q +LL + + PGG +V+S C+ +++E V+ Sbjct: 183 GEGTLHRDPHALRTWTPKKPGRFARTQLRLLRAALRMLPPGGRLVYSTCTFSVEENELVI 242 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAV 436 + L + +VP + + + EG +R +ID S DGFF Sbjct: 243 HEALG-NDDRYRIVPSVPRWLEPHTVPGLTEWEGRELREDLRHAFRIDPASLESDGFFVA 301 Query: 437 ALRR 440 + R Sbjct: 302 VIER 305 >gi|332157765|ref|YP_004423044.1| nucleolar protein [Pyrococcus sp. NA2] gi|331033228|gb|AEC51040.1| nucleolar protein [Pyrococcus sp. NA2] Length = 311 Score = 133 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 19/268 (7%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +E G + + L ++ G+ Q+AS+ IP + V Sbjct: 55 LEEKFELERIPWTKGEGFYINSYDVNFGELIEYSLGLIIPQEASSMIPPVVLDPKPGELV 114 Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD+ AAPG KT Q + + + A D + R L NL R + + D Y Sbjct: 115 LDMAAAPGSKTTQIAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYYA 174 Query: 303 P-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + +FD VL+DAPCSS G IR++ T + + Q++L+L +KPGG + Sbjct: 175 KYENVFDKVLLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKRLILAAYKALKPGGTL 234 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVE--LVPLNSAYWKSIDMAMALSPE--GWIRITP 417 V+S C++D ++EEVV +L+ + VE +P+ + S E +R+ P Sbjct: 235 VYSTCTVDPLENEEVVDFLLQRTDAKVEKIDLPIRKSEPILEWEGRRYSEEIKKTVRLHP 294 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + F+ ++++P+ Sbjct: 295 QD--------NDTEAFYIA---KIVKPR 311 >gi|15897196|ref|NP_341801.1| proliferating cell nuclear antigen [Sulfolobus solfataricus P2] gi|284174441|ref|ZP_06388410.1| proliferating cell nuclear antigen [Sulfolobus solfataricus 98/2] gi|13813389|gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus solfataricus P2] gi|261601863|gb|ACX91466.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus solfataricus 98/2] Length = 339 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 74/343 (21%), Positives = 134/343 (39%), Gaps = 29/343 (8%) Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-- 176 AK +++ +R+A ++ ER N + E L S Sbjct: 4 RIAKYLSAHYNLFQISPSYKAKRLASKYRFLDYMIERYLNMFSTEEELEEYLNSCSFPLK 63 Query: 177 --YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWV 225 T+K D + + ++ + + P + G + + Sbjct: 64 KSIRCNTLKTDCKKLEEIMLEKGFVLEKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHI 123 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282 Q ++ +P + + VLD+ AAPGGKT Q ++ + V A++ + R+ L N Sbjct: 124 QGLASMVPAYVLNPSYDDFVLDMAAAPGGKTTQLSQIMQNKGLVIAVEKKRSRIRALLSN 183 Query: 283 LDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 ++RL +I+ D K FD +L+DAPCS G I++ P + DD+ Sbjct: 184 VNRLGAENVVLIKTDALNLININKSQFDKILLDAPCSGEGLIQKDPTRRYKTTMDDLRDF 243 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAY 397 A Q L+ +K GG +V+S CS+ ++ E +V + + VE P ++ Y Sbjct: 244 AHLQLSLIEIAYELLKKGGYIVYSTCSVAPEEDELIVNFAIEELGMKAMSVEGYPASNGY 303 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + +R P G +GFF L++ Sbjct: 304 IEYYTTRFSNDVKNCLRFFPH--------KQGTEGFFLCLLKK 338 >gi|306829767|ref|ZP_07462956.1| NOL1/NOP2/sun family protein [Streptococcus mitis ATCC 6249] gi|304428118|gb|EFM31209.1| NOL1/NOP2/sun family protein [Streptococcus mitis ATCC 6249] Length = 434 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ Q + + Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPNPGMKVLDLAAAPGGKSTQLAAYLAN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 QGILVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + TD + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPEAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ + + + R+ P + F L+ Sbjct: 236 LDTY--DFELLPVEHVNGMVAGINLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|313683659|ref|YP_004061397.1| fmu (sun) domain protein [Sulfuricurvum kujiense DSM 16994] gi|313156519|gb|ADR35197.1| Fmu (Sun) domain protein [Sulfuricurvum kujiense DSM 16994] Length = 315 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 79/321 (24%), Positives = 125/321 (38%), Gaps = 33/321 (10%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGG 202 +PE F ERLE ER AI SP + V + +L A +P Sbjct: 1 MSLPEAFTERLEKIVPHERYEAIVRTFDSPKNVTFRVNTLKSTTQELEAELKAAHIPYES 60 Query: 203 IRLKELPESI--------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 I E I F G ++Q+ ++ I L +VLDL AAPGG Sbjct: 61 IGWLEGVYRIAPEHKLALTQTDAFYGGRLYIQNLASMIAPLLLSPQPEETVLDLAAAPGG 120 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 KT ++ + ++A++ S+ R +L NL + D K FD Sbjct: 121 KTLMLAGMMQNTGWLSAVEPSRERFFRLCDNLKSQGVTNAHTYMTDGRSVGKKCPEMFDR 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+DAPCSS + H + + +++ QR+LLL +KPGG +++ CS Sbjct: 181 ILLDAPCSSEARFKTHDPKSMSFWSIHKVKETSKLQRRLLLSAYDALKPGGKLLYCTCSF 240 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-------GWIRITPDMLE 421 +++E +Q +L + +PL + E +RI P Sbjct: 241 SPEENESPLQHLLERHGEHLNTLPLTLPFDNIQKPLERWGKEVFDKRIQNGVRILP---- 296 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + +DGFF L + Sbjct: 297 -----TDTIDGFFLCMLEKKT 312 >gi|315231566|ref|YP_004072002.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] gi|315184594|gb|ADT84779.1| ribosomal RNA small subunit methyltransferase B [Thermococcus barophilus MP] Length = 384 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 S+ L F +G ++ Q + + ++ ++D+ AAPGGKT L + + ++ Sbjct: 167 SLSELKSFEKGYFYPQSLPSMVTARILEPNEGDLIIDMAAAPGGKTTHLAQLMQNRGEII 226 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D SK RL K+ L RL + ++ MD+ + D +L+DAPC++ G P Sbjct: 227 AIDKSKNRLRKMEETLKRLGVKNVKLVHMDSRNLPELGIKADKILLDAPCTALGV---RP 283 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +R DI+ +A +QR + I ++ GGI+V+S C+L +++E V+ +++ Sbjct: 284 KLWESRTPKDIIATARYQRHFINAAIKSLRKGGILVYSTCTLSYEENEGNVKYMIKK--- 340 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + + R P GFF LR++ Sbjct: 341 -----GLRLEKQSFFIGSPGIGLKEVQRFYPH--------KHLTQGFFIAKLRKV 382 >gi|320546805|ref|ZP_08041113.1| NOL1/NOP2/sun family protein [Streptococcus equinus ATCC 9812] gi|320448551|gb|EFW89286.1| NOL1/NOP2/sun family protein [Streptococcus equinus ATCC 9812] Length = 436 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 18/232 (7%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 G+ + Q+ +A + Q+ N+ VLDL AAPGGK+ + + + + Sbjct: 63 GKSAEHVSGLVYSQEPAAQMVAQVASPKENMRVLDLAAAPGGKSTHLLSYMNNTGVLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S +R + L N++R + D K+ FD ++ D PCS G R+ P Sbjct: 123 EISSKRSKILVENIERFGARNVVVTNESSDKLAKVFKEYFDLIVFDGPCSGEGMFRKDPQ 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + A Q+++L + + + PGG +V+S C+ +++E VV+ +L + Sbjct: 183 ATQYWHEGYPAECASLQKEILEEAMKMLAPGGTLVYSTCTWSPEENEGVVKWLLSTY-DN 241 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +ELVP+ + + M R+ P + F LR Sbjct: 242 LELVPIEKINGMAEGIEMPEVA----RMYPHCFKGEGQ--------FVAKLR 281 >gi|241896425|ref|ZP_04783721.1| tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] gi|241870405|gb|EER74156.1| tRNA/rRNA methyltransferase [Weissella paramesenteroides ATCC 33313] Length = 466 Score = 133 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 119/305 (39%), Gaps = 21/305 (6%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 ++ +P ++ + + + + + + +L Sbjct: 1 MAELPTDYQTKYRQLMDDDADEFFAAFDQPVVK---AFRINPLKANQQLYDTPTNGQVPW 57 Query: 205 LKELPESIVSLPGFAE--GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 K + G+ + Q+ SA + +L VLDL AAPGGK+ Sbjct: 58 GKWGYFGVAKGHSVDHTTGLIYSQEPSAQLVGELAQPQPGERVLDLAAAPGGKSTHLASF 117 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCS 317 + + + ++ ++R + L N++R + + + K FD +++DAPCS Sbjct: 118 MNQQGLLVSNEIFRKRAQILSENIERFGVQNALVTNHSPQELSKKFPQYFDRIVLDAPCS 177 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ PD + D ++A QR++L++ + +KPGG +V+S C+ ++ E+++ Sbjct: 178 GEGMFRKDPDAMQYWHKDYPAENATRQREILVETMKMLKPGGTLVYSTCTFAPEEDEQII 237 Query: 378 QKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFF 434 +L P + VP + +PE +R+ P + G F Sbjct: 238 AWLLAEYPDLHLVDVPKHDGMSDGRPAWADGNPELAKTVRLFPQSVAGE--------GHF 289 Query: 435 AVALR 439 L+ Sbjct: 290 MAKLQ 294 >gi|6502552|gb|AAF14354.1|AF113138_1 nucleolar protein Nop2 [Eremothecium gossypii] Length = 240 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 16/213 (7%) Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL + Sbjct: 1 DPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVC 60 Query: 295 EMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 DA ++ FD +L+DAPCS TG I + V R D ++ Q++L+L I Sbjct: 61 NYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAID 120 Query: 354 FV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 V K GG++V+S CS+ +++E VV LR P V+LV A K + Sbjct: 121 SVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPN-VKLVETGLAIGK-----EGSTS 174 Query: 410 EGWIRITPDML--EKIDGVSSGMDGFFAVALRR 440 + P + + +DGFF ++ Sbjct: 175 YRGKKFHPHYHLTRRYYPHTYNVDGFFVAKFQK 207 >gi|124028405|ref|YP_001013725.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] gi|123979099|gb|ABM81380.1| predicted tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] Length = 340 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 130/339 (38%), Gaps = 25/339 (7%) Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 R + + + + L+++ + + + LE F V + + Sbjct: 8 RELKEAFHRLEEKYGDLAQSLVEKYHSVRLHRDQVVRYLELFDTVSEVERLLSTGEDKVM 67 Query: 178 IDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL-------PESIVSLPGFAEGVWWVQD 227 + V D E + +L A + P I + + G++ VQ Sbjct: 68 KTIRVNTLLADPEEVSERLEAKGFRLRRHPYIDYGLVVLEEPIPIGATHEYMLGLYTVQG 127 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDR 285 ++ + V + D+CA G KT Q A + ALD+++R+L L+ N R Sbjct: 128 PASMMVVPALDPPGKGRIADMCAGAGVKTTQIAQHSPQAHIVALDINRRKLLALKNNASR 187 Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 L ++ + MDA FDA+L+DAPCS G + W R +DI Q Sbjct: 188 LAVFNIVALNMDARRLPQLGRFDAILLDAPCSGEGLLAFQRG-RWPRSFNDIASRVELQL 246 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKS---I 401 +LL GI + G++V++ CS+ +++E VV ++L +E P+ + Sbjct: 247 QLLKAGIEALADNGVLVYATCSISVEENEYVVTRILEEYSSLDLEEPPIKAGLPGKQSYA 306 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + R P + G +GF L + Sbjct: 307 GLKLDRRVSRCRRFYPHI--------HGTEGFTICRLVK 337 >gi|254168748|ref|ZP_04875590.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] gi|289596783|ref|YP_003483479.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469] gi|197622374|gb|EDY34947.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] gi|289534570|gb|ADD08917.1| RNA methylase, NOL1/NOP2/sun family [Aciduliprofundum boonei T469] Length = 301 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 105/254 (41%), Gaps = 13/254 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 KL + + + + G +++QD S+ PV +LD+ AA Sbjct: 56 KLEKYKNLNAYRIIDMPVKHPGATIEHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAA 115 Query: 252 PGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 PG KT ++ + A D++ RL+ L NL+RL + I + DA F+ Sbjct: 116 PGSKTTMLAELMREGTIVANDINFNRLKSLGGNLERLGITNVLITKKDAKKGNFGIKFNK 175 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS GT+R++P + A Q+ +L V GGI+V+S C+ + Sbjct: 176 ILLDAPCSGEGTVRKNPWGFRVVGDREHKMLARNQKIMLKNASRHVNNGGIIVYSTCTFN 235 Query: 370 KQDSEEVVQK---VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 ++E VV+ L P+ ++ + + E + RI P + Sbjct: 236 PWENEGVVKYGIETLSLEPVYFDIPIPHFKGVEEWGGEKYEYGEYYKRIYPHL------- 288 Query: 427 SSGMDGFFAVALRR 440 G F L++ Sbjct: 289 -EDTGGMFIAVLKK 301 >gi|229520538|ref|ZP_04409962.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM 11079-80] gi|229342362|gb|EEO07356.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae TM 11079-80] Length = 492 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 20/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LF 237 +L V G + E + + G++++Q+AS+ +PV Sbjct: 71 FCQRAAEKEWQLTPVPWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFM 130 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 G + SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 131 GNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIERCGIRNTALS 190 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D + + FDAVL+DAPCS GTIR+ PD + + I A Q+ L+ Sbjct: 191 NFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSLESIQSIANTQKSLIESAF 250 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+L +++++V + ++ V L + + + ++AL+ EG+ Sbjct: 251 QALKVGGTLVYSTCTLSCEENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGF 307 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + I P M + GFF +R+L Sbjct: 308 LHIFPQMYDCE--------GFFVAKIRKLA 329 >gi|229581588|ref|YP_002839987.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus Y.N.15.51] gi|228012304|gb|ACP48065.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus Y.N.15.51] Length = 339 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 16/281 (5%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 I + L + + + + I+ S+ S + G + +Q Sbjct: 66 IRCNTLRTDCKKLEEMMSEKGFILEKVKWLQHGYIIKRTPPMPSLGSTLEYLMGYYHIQG 125 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ +P + + VLD+ AAPGGKT Q ++ + V A++ + R+ L N++ Sbjct: 126 LASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVN 185 Query: 285 RLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL +++ D K FD +L+DAPCS G I++ P + DD+ A Sbjct: 186 RLGAENVVLVKTDVLNLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAY 245 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAYWK 399 Q L+ +K GG +V+S CS+ +++E +V + + VE P ++ Y + Sbjct: 246 SQLSLIEIAYELLKEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVE 305 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + +R P + G +GFF L++ Sbjct: 306 YYNTKFNIDVKNCLRFFPH--------TQGTEGFFLCLLKK 338 >gi|257051428|ref|YP_003129261.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM 12940] gi|256690191|gb|ACV10528.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM 12940] Length = 302 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 113/298 (37%), Gaps = 14/298 (4%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML---PTGGIRLKEL 208 E L + R L + A + + L+ Sbjct: 6 RYESLFEDWSGFRAACRRPLPSVVRVNTLKTTVERAKTALETEGITYETVDWHDGLLRLP 65 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265 ++ S + +G Q+ +++P + V D AAPG KT QL + Sbjct: 66 DDNPGSNWPYVQGWLHGQEEVSALPPVVLDPDPGDRVWDATAAPGSKTTQLAALMDDEGA 125 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGT 321 + A D + RL LR N +RL + + DA ++ + +D LVDAPCS GT Sbjct: 126 IVATDNNLGRLSALRSNAERLGVTNLAVTNEDARNHSLKPFDGRQYDHALVDAPCSCEGT 185 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 IR++PD L D + A Q+ +L + + KPGG VV+S C+ +++E V+ L Sbjct: 186 IRKNPDALAQWSLDHVSGIAGAQKGILRRAVEVTKPGGTVVYSTCTFAPEENEAVLDHAL 245 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + L + + + +R ++ + GFF L Sbjct: 246 EETDARLVSSDLPLDSRPGVTEWDGETFDPSVR----KAHRVYPHLNDTGGFFVAKLE 299 >gi|197336252|ref|YP_002156071.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri MJ11] gi|226725346|sp|B5FE06|RSMF_VIBFM RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|197317742|gb|ACH67189.1| ribosomal RNA small subunit methyltransferase F [Vibrio fischeri MJ11] Length = 473 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241 L V G + + S G++++Q+AS+ +PV + Sbjct: 57 AEKQWDLEPVPWCDTGFWITRPESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDD 116 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 LD+ +APG KT Q + + + A + S R++ L N+ R + + D Sbjct: 117 IEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNIQRCGVSNVALTHFDG 176 Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD++L+DAPCS GTIR+ PD + + +++ QR L+ +K Sbjct: 177 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALK 236 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG++V+S C+L+ ++++ + ++ V PL + + AL+ EG++ I Sbjct: 237 PGGVMVYSTCTLNHEENQNICHHLVEQFGDAVTFKPLGDLFE---NAEKALTKEGFLHIY 293 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF +R+ Sbjct: 294 PQIFDSE--------GFFVAKIRK 309 >gi|146320965|ref|YP_001200676.1| rRNA methyltransferase [Streptococcus suis 98HAH33] gi|145691771|gb|ABP92276.1| rRNA methyltransferase, putative [Streptococcus suis 98HAH33] Length = 324 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 26/244 (10%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 P G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + + + Sbjct: 6 GKSPEHVTGLVYSQEPAAQVVGQIAAPKKGMKVLDLAAAPGGKSTHLLSYLENTGLLVSN 65 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S +R L N++R + D + FD +++DAPCS G R++PD Sbjct: 66 EISNKRARILAENIERFGARNVVVTNESADRLEKVFPGYFDMIVLDAPCSGEGMFRKYPD 125 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + A QR++L ++ + P G +++S C+ +++EEVV +L + Sbjct: 126 AIQYWSKHYPAQCASLQREILESALNMLAPDGQLIYSTCTWSPEENEEVVTWLLEQYDLE 185 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-------R 440 + +P + + I R+ P F R + Sbjct: 186 LIDIPKINGMVEGIGYTEVA------RMYPHHFAGEGQ--------FVAKFRFLGEASQK 231 Query: 441 LIQP 444 ++P Sbjct: 232 KLKP 235 >gi|254230456|ref|ZP_04923834.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp. Ex25] gi|151937027|gb|EDN55907.1| NOL1/NOP2/sun family putative RNA methylase protein [Vibrio sp. Ex25] Length = 518 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 140/332 (42%), Gaps = 27/332 (8%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 I + + L + E + L E +A + T+K + Sbjct: 30 ICHKFCKRDPTLHPNVYIPDAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISV 89 Query: 187 ETWAHKLNAVMLPTGGIRLKE---------LPESIVSLPGFAEGVWWVQDASASIPVQ-- 235 E + + +A + + + + G++++Q+AS+ +PV Sbjct: 90 EAFLERADAKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSAL 149 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + +VLD AAPG KT Q+ + + + A + + R++ L N++R + Sbjct: 150 FMNDESYDAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAA 209 Query: 293 IIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D + + FDAVL+DAPCS GT+R+ D + ++ A Q+ L+ Sbjct: 210 LSNFDGRVFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIES 269 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +KPGG++V+S C+L +++++V + + VE L + + + AL+ E Sbjct: 270 AFHALKPGGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLETLFE---NANAALTEE 326 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 G++ I P + + GFF +R+L Sbjct: 327 GFLHIFPQVYDCE--------GFFVARIRKLA 350 >gi|313115676|ref|ZP_07801131.1| NOL1/NOP2/sun family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622003|gb|EFQ05503.1| NOL1/NOP2/sun family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 515 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 7/240 (2%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVT 267 P GV++ Q+ SAS L G + VLD+CAAPGGK++QL + Sbjct: 74 RPGRHPYHHAGVFYSQEPSASSAAPLLGVQPGMRVLDMCAAPGGKSSQLAAALQGRGVLV 133 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325 + + R + L+ NL+R+ + ++ FD VLVDAPCS G R+ Sbjct: 134 SNEYVAARADILKSNLERMGVPNAVVLNEAPARIADALPEFFDRVLVDAPCSGEGMFRKE 193 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 P + + A ++L + + PGG +V+S C+ ++ E V L+ P Sbjct: 194 PVARQQHCEALVKQCAELGAEILDCAAAVLAPGGQLVYSTCTFAPEEDEGQVAAFLQRHP 253 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 L + + G + + + +I G +G F L + P+ Sbjct: 254 -EFTLADALGNVDYTFGSEGEANRTGGLPLDVSKVRRIWPCQGG-EGHFMARLVKAGTPR 311 >gi|254172710|ref|ZP_04879385.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] gi|214033639|gb|EEB74466.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Thermococcus sp. AM4] Length = 311 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 11/252 (4%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK- 255 +P +++ +P G+ + Q+AS+ IP + VLD+ AAPG K Sbjct: 63 PIPWVREGFFINVDNLAKVPEHGLGLIFGQEASSMIPPVVLKPRPGELVLDMAAAPGSKT 122 Query: 256 --TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312 AQ + + + A D ++ R L NL+R+ + + D + + FD VL+ Sbjct: 123 GQIAQYMENEGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGAKFARFENTFDRVLL 182 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCSS G IR+ L +VK Q++L+L G +KPGG +V+S C++D + Sbjct: 183 DAPCSSVGMIRKSWRFLREWREKAVVKYMNIQKRLILAGYKALKPGGTLVYSTCTIDPLE 242 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +EEVV +LR + +E + L + + + +R +I + + Sbjct: 243 NEEVVDYLLRKTDARLEKIDLPVKTSEPVLEWEGKTYSDELR----KALRIHPNDNDTEA 298 Query: 433 FFAVALRRLIQP 444 FF ++++P Sbjct: 299 FFIA---KIVKP 307 >gi|242399529|ref|YP_002994954.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739] gi|242265923|gb|ACS90605.1| Putative nucleolar protein I [Thermococcus sibiricus MM 739] Length = 304 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 16/232 (6%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSK 273 ++ G+ + Q+AS+ IP + VLD+ AAPG KT Q + + + A D+ K Sbjct: 80 EYSLGLVFPQEASSMIPPVVLDPQPGELVLDMAAAPGAKTTQIAQYMENKGCIIANDMKK 139 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R+ L NL+R + + D + + FD +L+DAPCSS G +R+ L++ Sbjct: 140 WRVNVLIANLNRFGVLNTRVTVKDGTYFGRFENTFDKILLDAPCSSVGMVRKSFKFLFSW 199 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++ + Q+KL++ +KP G++V+S C++D ++E VV +L + +E + Sbjct: 200 SMKKVITYSNIQKKLIMAAYKALKPRGVLVYSTCTIDPLENEGVVDYLLLKTDAKIEKID 259 Query: 393 LN----SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + M + +RI P + + FF +R+ Sbjct: 260 LPLHSTPPVLEFDGMKYSEEVRKCLRIHPQD--------NNTEAFFVAKIRK 303 >gi|239932443|ref|ZP_04689396.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672] Length = 274 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 17/214 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + + RD L +V TLR D Sbjct: 22 PVRVLAFEALRAVDERDAYANLVLPPLLRTAREKGDFDARDAALATELVYGTLRRQGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 82 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 140 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LRR++++ ++ +A + P W L + G R + Sbjct: 141 NAVLRRIAQDDLDGWLERVAPPYEEDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEDLL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 A + L + T L G Sbjct: 201 RADNERPEVTLVARPGRATTDELLGEEAAVPGRW 234 >gi|227828150|ref|YP_002829930.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25] gi|229585379|ref|YP_002843881.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27] gi|238620340|ref|YP_002915166.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4] gi|227459946|gb|ACP38632.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25] gi|228020429|gb|ACP55836.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27] gi|238381410|gb|ACR42498.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4] gi|323475203|gb|ADX85809.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus REY15A] gi|323477935|gb|ADX83173.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus HVE10/4] Length = 339 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 16/281 (5%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 I + L + + + + I+ S+ S + G + +Q Sbjct: 66 IRCNTLRTDCKKLEEMMSEKGFILEKVKWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQG 125 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ +P + + VLD+ AAPGGKT Q ++ + V A++ + R+ L N++ Sbjct: 126 LASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVN 185 Query: 285 RLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL +++ D K FD +L+DAPCS G I++ P + DD+ A Sbjct: 186 RLGAENVVLVKTDVLNLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAY 245 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAYWK 399 Q L+ +K GG +V+S CS+ +++E +V + + VE P ++ Y + Sbjct: 246 SQLSLIEIAYELLKEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVE 305 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + +R P + G +GFF L++ Sbjct: 306 YYNTRFNIDVKNCLRFFPH--------TQGTEGFFLCLLKK 338 >gi|84517372|ref|ZP_01004725.1| possible NOL1/NOP2/sun family protein [Loktanella vestfoldensis SKA53] gi|84508736|gb|EAQ05200.1| possible NOL1/NOP2/sun family protein [Loktanella vestfoldensis SKA53] Length = 389 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 141/449 (31%), Gaps = 77/449 (17%) Query: 1 MKSGMNAR-LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M G AR + +L + L S F +D+ VR V LR Sbjct: 1 MTPG--ARVAAAITVLDQI-GGGAFAEQALTGWARASRFAG--AKDRAAVRDHVFDVLRC 55 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 + +L++ L ++ + H Sbjct: 56 RRSLGESDGRLLMARLLQRDNVD---------------------------LSHIFNGLDH 88 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC------- 172 +++ + L A +P+W + G + + A Sbjct: 89 APDVLSETEAAALALPLALSDAAAC--DLPDWLWPVWQASLGADALQAAQAQQARADVFL 146 Query: 173 --ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 + A G +R+ + P I + + G+ +QDA++ Sbjct: 147 RVNQRRITLAAAMAALAQDGVTAQAHDTVDGCLRVLDNPRRIRTAAAYLTGLVELQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 VQ+ VLD CA GGK A A + A D++ R+ L R Sbjct: 207 QRAVQMVPVAAGARVLDYCAGGGGKALAFADRHVADIFAHDIAPARMADLPDRAARAG-- 264 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 I + FD V DAPCS +GT RR PD W D + Q ++ Sbjct: 265 -VVITRLAPDQVADHAPFDVVFCDAPCSGSGTWRRSPDAKWRLTRDRLDALCAIQNDVIG 323 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + +FV P G++ ++ CS+ + +++ V+ + L +P Sbjct: 324 RAATFVAPQGLLAYATCSVLQDENDAVITRFLHCNPAWSV-------------------- 363 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +R ++ G DGFF L Sbjct: 364 --MLR------DQRLPGPDG-DGFFLSVL 383 >gi|295100667|emb|CBK98212.1| tRNA and rRNA cytosine-C5-methylases [Faecalibacterium prausnitzii L2-6] Length = 514 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 7/258 (2%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L +++ P GV++ Q+ SAS L G + VLDLCAAP Sbjct: 53 LRPSPFCKAAFVVEQPDFRPGRHPYHHAGVFYSQEPSASSAAPLLGVRPGMRVLDLCAAP 112 Query: 253 GGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307 GGK++QL + + + R E L+ NL+R+ + ++ F Sbjct: 113 GGKSSQLAAALQGQGLLVSNEYVAARAEILKSNLERMGVSNAVVLNETPARIAAALPEFF 172 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VLVDAPCS G R+ P L + + A +L + + PGG +V+S C+ Sbjct: 173 DRVLVDAPCSGEGMFRKEPAALAQHCEALVKQCAELGADILDSAAAALAPGGELVYSTCT 232 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 ++ E V L+ P L + + + G + + + +I Sbjct: 233 FAPEEDEGQVAAFLQRHP-EFTLADVLGHVDYTFGSEGEANRTGGLPLDVSRVRRIWPCQ 291 Query: 428 SGMDGFFAVALRRLIQPK 445 G +G F L + P+ Sbjct: 292 GG-EGHFMARLVKAGTPR 308 >gi|221061617|ref|XP_002262378.1| Sun-family protein [Plasmodium knowlesi strain H] gi|193811528|emb|CAQ42256.1| Sun-family protein, putative [Plasmodium knowlesi strain H] Length = 376 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 73/426 (17%), Positives = 138/426 (32%), Gaps = 87/426 (20%) Query: 29 LDLEYGDS-AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLR 87 LD+ + RD+ + V +R + L S P Sbjct: 22 LDIYMRLYFKGNNIKNRDKPFISEHVYNIMRNKTLL-----SYLSSPCP----------- 65 Query: 88 VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISI 147 LY +V K + + +N+ Sbjct: 66 ------LYTNV------------IKTYFSSDKWKYEMNNE-----------KIPAHVRYS 96 Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPTGGIR 204 P+ E+L N YG+++ + + L V + L + + Sbjct: 97 FPKELYEQLVNCYGEKKSHTLMSILNEKAPVFLRVNTNKISRNDLYKLLMSKGVSVEKCV 156 Query: 205 ------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--- 255 L + + + +G + +QD ++ I VLD CA GGK Sbjct: 157 NSPQGLLLTKSCILKNNYEYNKGYFEIQDEASQIVSLKIPVQPGYKVLDFCAGSGGKTLA 216 Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 + ++ + KV D+ + L + + L R ++ ++ + D V+VDA Sbjct: 217 FSPIMDNTGKVYLHDIRDKMLSQAKVRLRRAGIHNYILLNSNHILLKKLVGYMDTVIVDA 276 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PC+ TG +RR+P++ + ++ + QR++ Q + +VK G +V+ CS+ ++ Sbjct: 277 PCTGTGALRRNPEMKYKYSNSNLYEYVNLQRQIFQQALLYVKKNGKIVYITCSILDAENV 336 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 V+ + + P +S S MDGFF Sbjct: 337 HQVKYFCEKHNLFLSEPPFHS----------------------------LPQSKSMDGFF 368 Query: 435 AVALRR 440 R Sbjct: 369 LAIFER 374 >gi|86156704|ref|YP_463489.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773215|gb|ABC80052.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 437 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 92/442 (20%), Positives = 149/442 (33%), Gaps = 50/442 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + V + L+ L ++ V V LR ++D +L Sbjct: 18 ALVLEVHGLVHDQGWLADRALERVLRRER--ALWANERRAVAEAVYGILRSQGQLDFLLG 75 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 S P L+R + V A A+ R A L + Sbjct: 76 ----GSPPLATRYAAWLVRGA-------------GVGPAQAAARLGAAPRALAGL--AEA 116 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK----- 183 + L R A + +P W ERL + G+ A++ + + Sbjct: 117 DARIAAIADPLDRFAVEASLPRWIAERLVSELGEAEARALAAVLNRRAPLTVRANALAGD 176 Query: 184 ---FDIETWAHKLNAVMLPTGGIRLK-ELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 A + A L + ++ +L F G + +QD + + G Sbjct: 177 REALRAALAAEGVPAEQTRFSPWGLTLDGHQNAFALEAFRTGGFEIQDEGSQLIALACGA 236 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--- 293 V+D CA GGK A + + + ALD RLE R R H++ Sbjct: 237 RPGQVVVDACAGAGGKSLALAAEMHNKGSLHALDSDAGRLEDARRRARRAHVHNLRTRVL 296 Query: 294 ---IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 E +A D VLVDAPCS GT+RR PD W D + A QR+LL + Sbjct: 297 PAGPEAEAALTDLAGKADVVLVDAPCSGLGTLRRKPDARWRLQPGDPERFAAIQRELLGR 356 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +PGG +V++ C++ + ++++V + + PL A+ S Sbjct: 357 FARLARPGGRIVYATCAMGRTENDDVADF--AERELGLAPAPLAPFLGAERARALGASES 414 Query: 411 GWIRITPDMLEKIDGVSSGMDG 432 + G DG Sbjct: 415 RC---------ALYPHRHGTDG 427 >gi|227830857|ref|YP_002832637.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus L.S.2.15] gi|229579743|ref|YP_002838142.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus Y.G.57.14] gi|284998364|ref|YP_003420132.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus L.D.8.5] gi|227457305|gb|ACP35992.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus L.S.2.15] gi|228010458|gb|ACP46220.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus Y.G.57.14] gi|284446260|gb|ADB87762.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus L.D.8.5] Length = 339 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 120/281 (42%), Gaps = 16/281 (5%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 I + L + + + + I+ S+ S + G + +Q Sbjct: 66 IRCNTLRTDCKKLEEMMSEKGFILEKVKWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQG 125 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ +P + + VLD+ AAPGGKT Q ++ + V A++ + R+ L N++ Sbjct: 126 LASMVPAYVLNPSQDDFVLDMAAAPGGKTTQVSQIMQNKGLVVAVEKKRSRIRALLSNVN 185 Query: 285 RLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 RL +++ D K FD +L+DAPCS G I++ P + DD+ A Sbjct: 186 RLGAENVVLVKTDVLNLRRINKFQFDRILLDAPCSGEGLIQKDPTRRYKTTIDDLRDFAY 245 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP---VELVPLNSAYWK 399 Q L+ +K GG +V+S CS+ +++E +V + + VE P ++ Y + Sbjct: 246 SQLSLIEIAYELLKEGGYIVYSTCSVAPEENELIVNFAIEELGMKTMSVEGYPASNGYVE 305 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + +R P + G +GFF L++ Sbjct: 306 YYNTKFNIDVKNCLRFFPH--------TQGTEGFFLCLLKK 338 >gi|300771727|ref|ZP_07081602.1| NOL1/NOP2/sun family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761716|gb|EFK58537.1| NOL1/NOP2/sun family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 453 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 125/321 (38%), Gaps = 28/321 (8%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +I+P +L + I + + T A +A +P Sbjct: 1 MSNILPNSLIRKLGANPLFDEQAFIDIHENGERQSSIRINEKKITTAPFAHAEPIPWCDR 60 Query: 204 RLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKT-- 256 + +L P + G ++ QDAS+ + L LDLCAAPGGKT Sbjct: 61 GFYLVERPSFTLDPLYHAGCYYSQDASSMFISHIIQHLKLDGEPLKALDLCAAPGGKTTL 120 Query: 257 -AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDA 314 + + + A ++ K R+ L N+ R I D FD VL+DA Sbjct: 121 LNSYLHPQSLLVANEIIKTRVPILMENMVRWGNSNVVITNNDPSAFRRLPGYFDLVLIDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS +G R+ + ++ + Q+++L + + +K GI+++S CS ++++E Sbjct: 181 PCSGSGMFRKDSGAIDEWSEANVKLCSERQQRILAEAMGCLKTDGILLYSTCSYSQEENE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ +++ + +P+ + + + G+ R P ++ GFF Sbjct: 241 DIADWLVKEYGLKSIQIPVREEWGIEETKSDISTCFGY-RFYPHKVKGE--------GFF 291 Query: 435 AVAL----------RRLIQPK 445 A R+ I+P+ Sbjct: 292 ITAFVKTAFQETFNRKKIKPE 312 >gi|149911966|ref|ZP_01900563.1| putative nucleolar protein [Moritella sp. PE36] gi|149804974|gb|EDM65004.1| putative nucleolar protein [Moritella sp. PE36] Length = 286 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 120/265 (45%), Gaps = 25/265 (9%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLFGTLN--- 241 +T L V G L++ + + G++++Q+AS+ +PV Sbjct: 33 KTKQWLLTPVPWCEEGFWLEQENTDTKLGNSWEHIAGLFYIQEASSMLPVTALFKEQVSG 92 Query: 242 ----NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 ++LD +APG KT+Q+ + + A ++S RL+ L N+ R + + Sbjct: 93 PTAQYNTILDCASAPGSKTSQIAALCNNNNFIVANELSSSRLKVLSANIKRCGIKNVALS 152 Query: 295 EMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 DA + ++FDAVL+DAPCS G IR+ + I A Q++L+ Sbjct: 153 HYDANVFGTWLPEMFDAVLLDAPCSGEGAIRKDDKAMLNWSLKSINDIADIQKELIDSAF 212 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +KPGG +++S C+L+ +++ V Q +L P E++PLN + L+ EG+ Sbjct: 213 KALKPGGTLIYSTCTLNGIENQAVCQHLLDLYPDNAEVIPLNDLFP---TANNCLTAEGF 269 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVA 437 + + P + + GFF Sbjct: 270 LHVWPQIYDSE--------GFFVAK 286 >gi|322385469|ref|ZP_08059113.1| NOL1/NOP2/sun family protein [Streptococcus cristatus ATCC 51100] gi|321270207|gb|EFX53123.1| NOL1/NOP2/sun family protein [Streptococcus cristatus ATCC 51100] Length = 450 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 118/312 (37%), Gaps = 24/312 (7%) Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 + +R P FKE+ E + A E Sbjct: 1 MNYKSIYEREKASMDFPAGFKEKYEK-ILGQEAEAFFATFDQDPISAFRSNPLKENQKDF 59 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 +A+ G K +S+ + G + + Q+ +A + Q+ + VLDL AAP Sbjct: 60 TDAIPNTDWGYYGKVSGKSVEHVTG----LVYSQEPAAQMVAQVAAPQKGMKVLDLAAAP 115 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLF 307 GGK+ + + + + +++ +R + L N++R + D + F Sbjct: 116 GGKSTHLLSYLGNTGLLVSNEINAKRSKILVENIERFGARNVLVTNESADRLAKVFQGYF 175 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +++DAPCS G R+ PD + + A QR++L + + GG +V+S C+ Sbjct: 176 DLIVLDAPCSGEGMFRKQPDATQYWSPEYPAQCARLQREILEDAVKMLATGGQLVYSTCT 235 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 +++EE+V +L + P+ + +P + ID R+ P + Sbjct: 236 WAPEENEEIVAWLLENFPLELLEIPKINGMVAGIDFPETA------RMYPHHFKGEGQ-- 287 Query: 428 SGMDGFFAVALR 439 F R Sbjct: 288 ------FVAKFR 293 >gi|240102348|ref|YP_002958656.1| tRNA/rRNA cytosine-C5-methylase, putative [Thermococcus gammatolerans EJ3] gi|239909901|gb|ACS32792.1| tRNA/rRNA cytosine-C5-methylase, putative [Thermococcus gammatolerans EJ3] Length = 389 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L F EG+++ Q + + + ++D+ AAPGGKT+ + + ++ Sbjct: 174 SLSELQSFKEGLFYAQSLPSMVVAHVLEPSEEELIIDMAAAPGGKTSHIAQLLQNRGEII 233 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D S+ RL K+ L RL + +I MDA D +L+DAPC++ G P Sbjct: 234 AIDKSRNRLRKMEEELKRLGVKNVRLIRMDARKLPELGLQADKILLDAPCTALGI---RP 290 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +R DI+ +A +QR + I ++ GG++V+S C+L +++E V+ +L Sbjct: 291 KLWESRTPKDIIATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEANVKFMLEK--- 347 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + E R P+ GFF LR++ Sbjct: 348 -----GLKLEEQAVFIGSEGIGLENVQRFYPN--------RHLTQGFFIAKLRKV 389 >gi|254556617|ref|YP_003063034.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1] gi|254045544|gb|ACT62337.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1] Length = 455 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 18/232 (7%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSK 273 G + Q+ SA + VLDLCAAPGGKT + + ++++ Sbjct: 71 EHLAGAVYSQEPSAMTVGEFAKPEPGERVLDLCAAPGGKTTHLLSYLHQTGLLVTNEINR 130 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331 +R+ L N++R I + FD +LVDAPCS G R+ D + Sbjct: 131 QRVTALGDNVERYGARNTVITNDTPAALAKELPGFFDRILVDAPCSGEGMFRKDHDAVQY 190 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 D A QR++L + + ++PGG +++S C+ ++ E+++ +L++ P EL Sbjct: 191 WTPDYPAACAERQREILTEAVKMLRPGGHLIYSTCTFAPEEDEQMMAWLLKTYP-EFELE 249 Query: 392 PLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALR 439 PL + R+ P ++ G F L Sbjct: 250 PLAKTAGMVDAKPEWADGNPELAKAARLFPHLMRGE--------GHFIAKLV 293 >gi|91227972|ref|ZP_01262082.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01] gi|91188293|gb|EAS74591.1| Sun/nucleolar protein family protein [Vibrio alginolyticus 12G01] Length = 478 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 ET KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 ETKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + ++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V Q + + VE L + + + AL+ EG++ I P Sbjct: 237 GGVMVYSTCTLSTEENQQVCQHLKETFGDAVEFERLENLFE---NAEAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+ Sbjct: 294 QVYDSE--------GFFVARIRKQA 310 >gi|28378408|ref|NP_785300.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1] gi|300767350|ref|ZP_07077262.1| NOL1/NOP2/sun family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180562|ref|YP_003924690.1| rRNA methylase (putative) [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271244|emb|CAD64148.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1] gi|300495169|gb|EFK30325.1| NOL1/NOP2/sun family protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046053|gb|ADN98596.1| rRNA methylase (putative) [Lactobacillus plantarum subsp. plantarum ST-III] Length = 455 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 18/232 (7%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSK 273 G + Q+ SA + VLDLCAAPGGKT + + ++++ Sbjct: 71 EHLAGAVYSQEPSAMTVGEFAKPEPGERVLDLCAAPGGKTTHLLSYLHQTGLLVTNEINR 130 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331 +R+ L N++R I + FD +LVDAPCS G R+ D + Sbjct: 131 QRVTALGDNVERYGARNTVITNDTPAALAKELPGFFDRILVDAPCSGEGMFRKDHDAVQY 190 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 D A QR++L + + ++PGG +++S C+ ++ E+++ +L++ P EL Sbjct: 191 WTPDYPAACAERQREILTEAVKMLRPGGHLIYSTCTFAPEEDEQMMAWLLKTYP-EFELE 249 Query: 392 PLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALR 439 PL + R+ P ++ G F L Sbjct: 250 PLAKTAGMVDAKPEWADGNPELAKAARLFPHLMRGE--------GHFIAKLV 293 >gi|119472303|ref|ZP_01614463.1| predicted methyltransferase [Alteromonadales bacterium TW-7] gi|119445025|gb|EAW26321.1| predicted methyltransferase [Alteromonadales bacterium TW-7] Length = 479 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 18/255 (7%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250 + +E ++ + G +VQ+AS+ +P + +VLD+ + Sbjct: 68 WCSEGFWLERPSNEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIQTSHTVLDMAS 127 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305 APG KT+QL + + + A ++S RL+ L L R+ + + D F + Sbjct: 128 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMYE 187 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD++L+DAPCS GT+R+ D L + ++ A Q+ L+ +KPGG +V+S Sbjct: 188 CFDSILLDAPCSGEGTVRKDADALKNWSIESNIQIAQIQKDLIKSAFYALKPGGTLVYST 247 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+L ++++V + +L + L+ + A + EG++ + P + Sbjct: 248 CTLTPLENQQVCEYLLAEFGECIAPESLSDLFP---GADKATTAEGYLHVWPQTYDSE-- 302 Query: 426 VSSGMDGFFAVALRR 440 GFF ++ Sbjct: 303 ------GFFIAKFKK 311 >gi|237749113|ref|ZP_04579593.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13] gi|229380475|gb|EEO30566.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13] Length = 443 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 109/461 (23%), Positives = 182/461 (39%), Gaps = 51/461 (11%) Query: 2 KSGMNARLVSSHLL---SCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 K+ + ++ LL V + + SL L + + + ++ I +T Sbjct: 11 KTTLAPESLAFRLLGTAHAVARVEEGQSLPSALASVFSHPK---MDAATRGAIQDIAYLT 67 Query: 57 LRFLPRIDAVLDFVLISSLP----RKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 R L + +++ + + + L V L Y VD AVE A Sbjct: 68 ERKLGLCEFLIEQLTRQPPSPPLLKTLLASSLALLVGENDEADLKYEPYTTVDQAVEAAA 127 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIA----GISIIPEWFKERLENFYGKERVLAI 168 + LVN++LRR REK LL++ P W+ + Y K +I Sbjct: 128 SEGTLVRAKGLVNAVLRRFLREKEILLEKSNLSLTAKWNYPSWWIKETRRIYPKNW-ESI 186 Query: 169 SDACISPLYIDLTVK---FDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEG 221 + + L V +E + L A P + P + +PGF+EG Sbjct: 187 LHVGNTAPPLTLRVNKRKTTVEGYLADLEAAGHPATAIGPYAIRLDNPLPVYRIPGFSEG 246 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-IVSGAKVTALDVSKRRLEKLR 280 + VQDA+A + L + + VLD CAAPGGK+ + ++ + ALD RL+K+ Sbjct: 247 LVSVQDAAAQLAAPLLELQDGMRVLDACAAPGGKSGHMLEMADIDLHALDSEPERLKKID 306 Query: 281 CNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 NL RL L+A + ++ FD +L D PC+++G IRRHPD+ W R +D + Sbjct: 307 ENLTRLQLHATIMAGDASKKNWWDGNAFDCILADVPCTASGIIRRHPDIRWLRRPEDAKE 366 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A ++L +KPGG ++ + CS+ +SE + + P Sbjct: 367 LAVISARILDNLWELLKPGGKLLLATCSVWPLESEWQADAFAKRNNAARLDAPG------ 420 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ P + D DG F ++ Sbjct: 421 --------------QLFPTSDKLKD-----HDGLFYALFKK 442 >gi|305663869|ref|YP_003860157.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230] gi|304378438|gb|ADM28277.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230] Length = 367 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 80/323 (24%), Positives = 130/323 (40%), Gaps = 32/323 (9%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDAC----ISPLYIDLTVKFDIETWAHKLNAVML 198 A ++ +R + G E ++ +A I P I ++ E +L + Sbjct: 50 AKTYGYLDYMVQRYIDILGLEETKSLLNAFENFKIQPTIICNFLRTSCEELLQQLYRLNF 109 Query: 199 PTGGIRLKELPESIVSLP----------GFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 + ++S P + +DA+++IP + S++D+ Sbjct: 110 RLELVSWCHHCYRVISSPKHPSIGSTHQYLKGLYYVYRDAASTIPPLILNPTKGSSIIDM 169 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-- 303 CAAPGGK + I + D+S +RLE L N R+ + II DA Sbjct: 170 CAAPGGKAIHISLLIRDEGFLILNDISIKRLEALISNYYRMGFKSYIIINHDATLLPKIL 229 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FD V +DAPCS+ G I P D+VK + LLL + K GG +V+ Sbjct: 230 NYKFDYVFLDAPCSAEGAIMFDPSRKRKTSQGDLVKLVTREINLLLSALKLAKIGGRIVY 289 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-----DMAMALSPEGWIRITPD 418 + CS+ +++E V+ KVL + + + W S ++ A E IRI P Sbjct: 290 TTCSIAPEENEYVISKVLSIAGSKIVIESPPFNLWSSGLRTFRNIEFARDVEKCIRIWPH 349 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 M+GFF LR++ Sbjct: 350 --------KHMMEGFFICLLRKI 364 >gi|322375503|ref|ZP_08050016.1| NOL1/NOP2/sun family protein [Streptococcus sp. C300] gi|321279766|gb|EFX56806.1| NOL1/NOP2/sun family protein [Streptococcus sp. C300] Length = 434 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 120/299 (40%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPNTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + GF + Q+ +A + Q+ L + VLDL AAPGGK+ Q + + Sbjct: 60 KVSGKSPEHVTGF----VYSQEPAAQMVAQVAQPLPGMKVLDLAAAPGGKSTQLAAYLAN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ D + T + A QR++L ++ + GG +V+S C+ +++EE++ + Sbjct: 176 MFRKQSDAMDYWSTAYPCQCANLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIIHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ + + + R+ P + F L+ Sbjct: 236 LDTY--DFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|262394196|ref|YP_003286050.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25] gi|262337790|gb|ACY51585.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. Ex25] Length = 478 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 125/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 + KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 DAKGWKLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANVERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + ++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLDIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + + AL+ EG++ I P Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLETLFE---NANAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDCE--------GFFVARIRKLA 310 >gi|289580347|ref|YP_003478813.1| RNA methylase, NOL1/NOP2/sun family [Natrialba magadii ATCC 43099] gi|289529900|gb|ADD04251.1| RNA methylase, NOL1/NOP2/sun family [Natrialba magadii ATCC 43099] Length = 302 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 112/305 (36%), Gaps = 22/305 (7%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR---L 205 P + + + + + + T A + + V L Sbjct: 3 PFERYRPIIDDFEAFLAACERPLGNAVRVNTIKASPERATAALEEDDVAYEQAEWNPRVL 62 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 + +S S G Q+ +++P + V D CAAPGGK Q+ + Sbjct: 63 RLETDSPGSTWTSFHGFTHGQEEVSAVPPVVLDPQPGERVWDCCAAPGGKATQIAALMDD 122 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----AFDYCPKKLFDAVLVDAPCSS 318 V A D + R+ LR N +RL + + D + P FD LVDAPCS Sbjct: 123 RGTVVANDNNLGRISALRFNAERLGATSLAVTNDDARNYSMKRFPFDEFDRTLVDAPCSC 182 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 GTIR++PD L I A Q+ +L + I + GG VV+S C+ +++E VVQ Sbjct: 183 EGTIRKNPDALDNWSEGHIDTIAGIQKGILRRAIQTTREGGTVVYSTCTFAPEENEAVVQ 242 Query: 379 KVLRSSPIPVELVPLN----SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 + V L + D A + E RI P + GFF Sbjct: 243 HAIDEEDCRVVDFDLEMEHAPGLTEWRDEAFDSTLEQAARIYPHH--------NDTGGFF 294 Query: 435 AVALR 439 L Sbjct: 295 VAKLE 299 >gi|270290284|ref|ZP_06196509.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|270281065|gb|EFA26898.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] Length = 460 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 17/301 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ FKE+ + G+E ++ + H + + Sbjct: 1 MRLPDGFKEKYQKLLGEEAQPFLASFDQAVEKGFRVNPLKGAAKLHDHSIDQPISYSDWG 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 + G+ + Q+ SA + ++ VLDLCAAPGGKT + Sbjct: 61 YYGKVN-GKTIDHQNGLVYSQEPSAMLVGEIAHPQPGQKVLDLCAAPGGKTTYLASFMAQ 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + ++++ R + L N++R + I+ D FD ++VDAPCS G Sbjct: 120 EGLLVTNEINRGRAKVLAENVERFGIQNAVILNESPDRLVKKFNGYFDLIVVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + + + A QR++L + + P G +V+S C+ ++ E+++ + Sbjct: 180 MFRKDPEAIEYWSLEYPEECARRQREILKSAMQLLAPNGNLVYSTCTFAPEEDEQIIAWL 239 Query: 381 LRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + P +E V +PE IR+ P + G F Sbjct: 240 LENYPDLKMEPVARTENMDAGRPEWANGNPELAKAIRLFPHHFKGE--------GHFIAK 291 Query: 438 L 438 L Sbjct: 292 L 292 >gi|313904470|ref|ZP_07837846.1| RNA methylase, NOL1/NOP2/sun family [Eubacterium cellulosolvens 6] gi|313470612|gb|EFR65938.1| RNA methylase, NOL1/NOP2/sun family [Eubacterium cellulosolvens 6] Length = 532 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 71/310 (22%), Positives = 111/310 (35%), Gaps = 25/310 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------P 199 +PE F ER E A +D+ L V + Sbjct: 1 MNLPEAFVER-MKEMLGEEYRAFADSYNKTRLRGLRVNTMKISPEEFERIAPFPVKRVPW 59 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258 + P +A GV+++Q+ SA P VLDLCAAPGGK + Sbjct: 60 VRNGFFYDNDVFPAQHPYYAAGVYYLQEPSAMTPADRLPVEKGDRVLDLCAAPGGKATEL 119 Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314 + + A D S R L NL+ + FD +LVDA Sbjct: 120 AAKLDGTGMLVANDASNSRTRALLRNLELFGTKNVMVTAELPAKLREVFPLYFDKILVDA 179 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ +V+ T + + A QR +L + PGG++++S C+ + E Sbjct: 180 PCSGEGMFRKAQEVIGTWSPERVEYFASQQRNILENAYEMLVPGGLLMYSTCTFSPDEDE 239 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSSGM 430 +++ L P +EL+ + + S IRI P +++ Sbjct: 240 QMISWFLEKYP-DMELLDIPAYEGFSPGRPEWADGREDLRKCIRIWPHVMDGE------- 291 Query: 431 DGFFAVALRR 440 G F L + Sbjct: 292 -GHFLALLLK 300 >gi|331085063|ref|ZP_08334150.1| hypothetical protein HMPREF0987_00453 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408763|gb|EGG88228.1| hypothetical protein HMPREF0987_00453 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 471 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 17/263 (6%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L + G P + G++++Q+ SA P V D+CAA Sbjct: 53 ELKPIPWIENGFYYDGDHIQPSKHPYYFAGLYYLQEPSAMTPANRLPINPGDKVFDVCAA 112 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306 PGGK + + + A D+S R + L N++ + + E + ++ Sbjct: 113 PGGKATELGAKLDGTGVLVANDISNSRAKGLLKNIELFGIGNVLVLSEEPGKIEEYFEEY 172 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS G R+ ++ + A QR ++ Q +KPGG++++S C Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFAKIQRSIVTQAARMLKPGGMMLYSTC 232 Query: 367 SLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEK 422 + D +++E ++ +L P E+ P +++ + + +R+ P L Sbjct: 233 TFDSEENEGTIEYLLEQYPEFQICEIAPYEGFCPGLPEVSRSKREDLSRTVRMFPHKLHG 292 Query: 423 IDGVSSGMDGFFAVALRRLIQPK 445 G + L++ QPK Sbjct: 293 E--------GHYVALLQKGEQPK 307 >gi|15920491|ref|NP_376160.1| Sun family protein [Sulfolobus tokodaii str. 7] gi|15621274|dbj|BAB65269.1| 353aa long hypothetical sun protein [Sulfolobus tokodaii str. 7] Length = 353 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 27/317 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV------KFDIETWAH----K 192 A + ER G+E +C PL + +E K Sbjct: 44 ASKYKFLSYMVERYIKIMGEEETEDFLYSCSFPLKKSVRCNDLLIECNKLEKIMENKGFK 103 Query: 193 LNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 L V G +K+ P S+ + + G +++Q ++ +P + N VLD+ A Sbjct: 104 LEKVSWLKHGYIVKQYPSKPSLGATIEYLSGYYYIQGLASMVPPYVLDPNENDLVLDMAA 163 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306 APG KT QL + + + A++ S+ R++ L N++R+ + ++ DA Sbjct: 164 APGSKTTQLAQLMKNKGLIVAVEKSRERIKSLYSNVNRMKIKNVVLLRADARILRKLNIP 223 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 F+ +L+D PCS G I P +D+ Q +L+ + ++PGGI+V+S+C Sbjct: 224 FNKILLDVPCSGEGLIPEDPSRKTKTTIEDLKIFFQNQLELIDIAYNILEPGGILVYSSC 283 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELV---PLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S+ +++E VV ++ + + + P S + + S IR P Sbjct: 284 SIAPEENEAVVNYIIENYGAKTDKIYGYPATSGITEFNGIKFDESLRNCIRFYPH----- 338 Query: 424 DGVSSGMDGFFAVALRR 440 SG +GFF + + Sbjct: 339 ---KSGTEGFFVCKIIK 352 >gi|315613428|ref|ZP_07888336.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis ATCC 49296] gi|315314424|gb|EFU62468.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis ATCC 49296] Length = 434 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPEGFVEK-YEEILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K P A G+ + Q+ +A + Q+ L + VLDL AAPGGK+ Q + + Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPLPGMKVLDLAAAPGGKSTQLAAYLAN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIILDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + TD + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPEAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ + + + R+ P + F L+ Sbjct: 236 LDTY--DFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|153835218|ref|ZP_01987885.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01] gi|148868284|gb|EDL67416.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01] Length = 478 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 E KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 EAKGWKLSPVPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +V+ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + AL+ EG++ I P Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAEAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDCE--------GFFVARIRKLT 310 >gi|325661182|ref|ZP_08149809.1| hypothetical protein HMPREF0490_00542 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472689|gb|EGC75900.1| hypothetical protein HMPREF0490_00542 [Lachnospiraceae bacterium 4_1_37FAA] Length = 471 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 17/263 (6%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L + G P + G++++Q+ SA P V D+CAA Sbjct: 53 ELKPIPWIENGFYYDGDHVQPSKHPYYFAGLYYLQEPSAMTPANRLPINPGDKVFDVCAA 112 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306 PGGK + + + A D+S R + L N++ + + E + ++ Sbjct: 113 PGGKATELGAKLDGTGVLVANDISNSRAKGLLKNIELFGIGNVLVLSEEPGKIEEYFEEY 172 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS G R+ ++ + A QR ++ Q +KPGG++++S C Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFAKIQRSIVTQAARMLKPGGMMLYSTC 232 Query: 367 SLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEK 422 + D +++E ++ +L P E+ P +++ + + +R+ P L Sbjct: 233 TFDSEENEGTIEYLLEQYPEFQICEIAPYEGFCPGLPEVSRSKRGDLSRTVRMFPHKLHG 292 Query: 423 IDGVSSGMDGFFAVALRRLIQPK 445 G + L++ QPK Sbjct: 293 E--------GHYVALLQKGEQPK 307 >gi|295091824|emb|CBK77931.1| tRNA and rRNA cytosine-C5-methylases [Clostridium cf. saccharolyticum K10] Length = 538 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 126/337 (37%), Gaps = 29/337 (8%) Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177 + E ++PE F+E++ GKE + Sbjct: 46 SLGGVRPETGDSAETEIRTENAPGCRAELLPEDFREKMRKLLGKEYEAYLESFEKPCHNG 105 Query: 178 IDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + ++L+ + E P + G++++Q+ S Sbjct: 106 LRVNTMKLSAEDWNRLSPFQTEPVPWIENGFYYNASDEGSGRPSRHPYYYAGLYYLQEPS 165 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRL 286 A P L VLD+CAAPGGK+ + + + + D+S R + L NL+ Sbjct: 166 AMTPANLLPVKPGDRVLDICAAPGGKSTELGARLRGEGLLFSNDISNSRAKALLKNLEMA 225 Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + FD +LVDAPCS G RR PD++ + Q Sbjct: 226 GIPNICVSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPIQ 285 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDM 403 R ++ + + ++PGG +++S C+ D++++E ++ +L P + +P + I M Sbjct: 286 RAIMEEAVKMLRPGGYLLYSTCTFDREENEGTIRYILDRHPDMSLCSLPHRHGFADGIGM 345 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+ P +E G F L+R Sbjct: 346 PE------CVRLFPHRIEGE--------GHFVALLQR 368 >gi|153812831|ref|ZP_01965499.1| hypothetical protein RUMOBE_03238 [Ruminococcus obeum ATCC 29174] gi|149831043|gb|EDM86132.1| hypothetical protein RUMOBE_03238 [Ruminococcus obeum ATCC 29174] Length = 469 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 18/252 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P + G++++Q+ SA P +VLDLCAAPGGK Sbjct: 65 PWISNGYFYPEDVRPSFCPLYQAGLFYLQEPSAMTPASCLPVTPGENVLDLCAAPGGKAT 124 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 ++ + A D+S R L N++ + + F +L+ Sbjct: 125 ALGAMLNGSGLLVANDISASRARALLRNIELFGITNAFVTNETPAHLGKHFPEFFHKILL 184 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + + + Q++L+LQ ++PGG++++S C+ ++ Sbjct: 185 DAPCSGEGMFRKEEALARDWTPEKSHELSSLQKELILQAADMLRPGGLLLYSTCTFAPEE 244 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSS 428 EEVV +L + P +EL+ L + + + + + + P ++ Sbjct: 245 DEEVVSHLLENRP-DMELLELPEYEGFTSGVPEWGNGDPSLIRSVHLFPHKMQGE----- 298 Query: 429 GMDGFFAVALRR 440 G F R+ Sbjct: 299 ---GHFLALFRK 307 >gi|257096824|sp|A7N0K6|RSMF_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 478 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 E KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 EAKGWKLSPVPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +V+ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + AL+ EG++ I P Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAEAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDCE--------GFFVARIRKLT 310 >gi|306824962|ref|ZP_07458305.1| NOL1/NOP2/sun family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432789|gb|EFM35762.1| NOL1/NOP2/sun family protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 434 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K P G+ + Q+ +A + Q+ + VLDL AAPGGK+ Q + + Sbjct: 60 KVS----GKSPEHVTGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + TD + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSTDYPSQCASLQREILADAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ M + + R+ P + F L+ Sbjct: 236 LDTY--EFELLPVEHLNGMVEGMGLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|254383563|ref|ZP_04998913.1| RNA-binding Sun protein [Streptomyces sp. Mg1] gi|194342458|gb|EDX23424.1| RNA-binding Sun protein [Streptomyces sp. Mg1] Length = 308 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 85/253 (33%), Gaps = 24/253 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ +L V + +L + RD L +V TLR D Sbjct: 42 PVRMLAFEVLRAVDERDAYANLVLPPLLRKARQDENFEARDAALATELVYGTLRRQGTYD 101 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 102 AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSASVELARVVLGD-GRAKFV 160 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR+++ ++ + +A P W L + G R + Sbjct: 161 NAVLRKIAAHDLDAWLEKVAPPYEDDAEEHLAVYHSHPRWVVSALWDALGGGRAGIEDLL 220 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAV-------MLPTGGIRLKELPESIVSLPGFAEGV 222 +A + L + T L+AV + +L EG Sbjct: 221 EADNERPEVTLVARPGRSTTGELLDAVGEDSALPGRWSPYAVRMAEGGEPGALEAVREGR 280 Query: 223 WWVQDASASIPVQ 235 VQD + + Sbjct: 281 AGVQDEGSQLVAM 293 >gi|254508779|ref|ZP_05120891.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C [Vibrio parahaemolyticus 16] gi|219548299|gb|EED25312.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C [Vibrio parahaemolyticus 16] Length = 474 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 65/268 (24%), Positives = 120/268 (44%), Gaps = 21/268 (7%) Query: 184 FDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPV---QLFG 238 +L V G + E + + G++++Q+AS+ +PV Sbjct: 54 TRANEKGWQLYPVPWCDEGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFKSD 113 Query: 239 TLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 T +VLD+ AAPG KT Q + + + A + S R++ L N++R + + Sbjct: 114 TDVYDTVLDMAAAPGSKTTQIAAKMANEGVLVANEYSSSRVKVLHANIERCGVRNAALSN 173 Query: 296 MDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + F+AVL+DAPCS GT+R+ D + ++ + Q+ L+ Sbjct: 174 YDGRVFGGWLPEQFEAVLIDAPCSGEGTVRKDADAMKNWSKASVIDISNTQKDLIESAFH 233 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG +V+S C+L +++++V + + VE L + + +L+PEG++ Sbjct: 234 ALKVGGHLVYSTCTLSVEENQQVCHHLKETFGEAVEFDSLEDLFP---NADKSLTPEGFL 290 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 I P + GFF LR++ Sbjct: 291 HIFPQTYDCE--------GFFVARLRKV 310 >gi|189462549|ref|ZP_03011334.1| hypothetical protein BACCOP_03239 [Bacteroides coprocola DSM 17136] gi|189430710|gb|EDU99694.1| hypothetical protein BACCOP_03239 [Bacteroides coprocola DSM 17136] Length = 490 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 127/312 (40%), Gaps = 16/312 (5%) Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN 194 + E +P F R + G+E+ +++A + + + + + Sbjct: 8 QHENHIEHIIYMNLPSDFVTRTRSLMGEEQFEKLAEALQHDTPVSIRLNRNKCKSVPAES 67 Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAP 252 + + P F G ++VQ+AS+ Q + +LDLCAAP Sbjct: 68 TSIPWCETGYYLSTRPTFTFDPLFHAGSYYVQEASSMFVEQALRQYVHEPVVMLDLCAAP 127 Query: 253 GGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308 GGK+ G+ + A +V + R + L NL + + D D+ P + +FD Sbjct: 128 GGKSTLARSVLPEGSMLVANEVMRNRSQVLAENLIKWGDEGVVVTNNDPADFAPLQAVFD 187 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS G R+ P + +++ QR++L S +KPGG++++S C+ Sbjct: 188 VILTDVPCSGEGMFRKDPVAVDEWSVENVDICWQRQRRILTDIWSCLKPGGLLIYSTCTY 247 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 +++++E+ V + R + E++P+ +I + R P Sbjct: 248 NREENEDNVSWIARE--LGAEILPVAVGEEWNITGNLTGGEFPVYRFLPHRTVGE----- 300 Query: 429 GMDGFFAVALRR 440 G F LR+ Sbjct: 301 ---GLFLAVLRK 309 >gi|16226071|gb|AAL16067.1|AF420249_1 NOL1R [Homo sapiens] Length = 429 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 82/410 (20%), Positives = 155/410 (37%), Gaps = 29/410 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCGTQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQPRLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 A W ++ E +R +P+ GFF + R+ P+ Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVPR 429 >gi|182415839|ref|YP_001820905.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1] gi|177843053|gb|ACB77305.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1] Length = 488 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 103/469 (21%), Positives = 170/469 (36%), Gaps = 86/469 (18%) Query: 1 MKSGMNARL----VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M + + AR ++ LL+ + +R + LL+ G L+ ++ + +V Sbjct: 1 MSAPVEARTTAWPAAARLLARWLDRRERVDELLESLGG-----SLTGTERARCQHLVFGA 55 Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-----------------LDVA 99 +R RIDA + ++ S ++ + +L V+ +++ + Sbjct: 56 IRHFGRIDAAIGRLVSHSPR---FATRAVLLVAGFELIEARAERGGAPTRASEAGTTNAP 112 Query: 100 DYA----------VVDLAVEQAKRDKENRHFAKLVN------SILRRVSREKIELLQRIA 143 D +V AVEQ K+ + +L K+ +A Sbjct: 113 DQPTPVVDGRVAKIVHHAVEQTKQLASPAEARMVNAVVRKLAGVLAEPPPPKLAPADVLA 172 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 P W +G A+ + P + + A +V PT G Sbjct: 173 EYFSHPVWLVRSWLAQFGAAATRALLEWNQQPAPVYARWRSSFAEPAEDKLSVAAPTEGN 232 Query: 204 RLKELPE--------------SIVSLPGFAE---------------GVWWVQDASASIPV 234 + + GF E G ++QD + IPV Sbjct: 233 PVPVEAAKAAPKAEEPVPAWFKPTAWAGFFEIPPGHWTEIEPLLQRGRIYLQDPATRIPV 292 Query: 235 QLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 +L VLD CAAPGGK + ++ A+D+ R+ +L+ NL R+ E Sbjct: 293 ELLAPAAGELVLDGCAAPGGKSLLIADSMRQGRLVAMDLPGARIGRLKENLARVPAGVEV 352 Query: 293 IIEMDAFDYCP---------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + P F AVL+D PCS+TG +R DV W D K Sbjct: 353 ALVQGDLRQDPAGLLREHKLPAQFPAVLLDVPCSNTGVMRHRVDVKWRLQEGDFRKHPLQ 412 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELV 391 Q LL V PGG +V+S CS+D +++E VVQ+ L + P +L Sbjct: 413 QLALLRAAARLVAPGGRLVYSTCSIDTEENEHVVQEFLAGARPGEWKLE 461 >gi|295115834|emb|CBL36681.1| NOL1/NOP2/sun family. [butyrate-producing bacterium SM4/1] Length = 428 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 20/247 (8%) Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258 E P + G++++Q+ SA P L VLD+CAAPGGK+ + Sbjct: 26 FYYNASDEGSGRPSRHPYYYAGLYYLQEPSAMTPANLLPVKPGDRVLDICAAPGGKSTEL 85 Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314 + + + D+S R + L NL+ + + FD +LVDA Sbjct: 86 GARLRGEGLLFSNDISNSRAKALLKNLEMAGIPNICVSSEAPEKLSEFLPEFFDCILVDA 145 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G RR PD++ + QR ++ + + ++PGG +++S C+ D++++E Sbjct: 146 PCSGEGMFRREPDMIKSYRERGPEDYVPIQRAIMEEAVKMLRPGGYLLYSTCTFDREENE 205 Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 ++ +L P + +P + + I M +R+ P +E G Sbjct: 206 GTIRYILDRHPDMSLCSLPHRFGFAEGIGMPE------CVRLFPHRIEGE--------GH 251 Query: 434 FAVALRR 440 FA LRR Sbjct: 252 FAALLRR 258 >gi|269839713|ref|YP_003324405.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC BAA-798] gi|269791443|gb|ACZ43583.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC BAA-798] Length = 325 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 122/318 (38%), Gaps = 33/318 (10%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR 204 +P F RLE R + +A P + L V D +L A + Sbjct: 8 LPAEFLRRLERIVPDHRYPEVLEALCEPRVVALRVNPLRADRREVVAELEAEGFALEPVS 67 Query: 205 LKE--------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 +++ +AEG ++QD ++ +PV + VLDL AAPG KT Sbjct: 68 WYADAFILRTGTKRELMATAAYAEGKIYLQDLASMVPVLVLAPRPGERVLDLAAAPGSKT 127 Query: 257 AQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVL 311 Q+ + + ++ A DVS R KL NL + + I + + FD L Sbjct: 128 TQMAALMGNSGEIVANDVSPARRFKLVANLRQQGVSIARVTAIRGEVLWRSYPEEFDRTL 187 Query: 312 VDAPCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 +DAPCS G P + A Q LL +S + GG++V+S C+L Sbjct: 188 LDAPCSMEGMFNCSDPATYEHWSPRKVKVLARRQAHLLRSAVSATRVGGVIVYSTCTLSP 247 Query: 371 QDSEEVVQKVLRSSPIPVELVPLN-------SAYWKSIDMAMALSPEGWIRITPDMLEKI 423 +++E VV +L VEL P+ + RI P L Sbjct: 248 EENEGVVDWLLHKEGDAVELEPVELPGLELWPGLASWQGRSFDPRVSLTARILPSRL--- 304 Query: 424 DGVSSGMDGFFAVALRRL 441 M+GFF +R++ Sbjct: 305 ------MEGFFVARIRKV 316 >gi|295695128|ref|YP_003588366.1| Fmu (Sun) domain protein [Bacillus tusciae DSM 2912] gi|295410730|gb|ADG05222.1| Fmu (Sun) domain protein [Bacillus tusciae DSM 2912] Length = 491 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 117/313 (37%), Gaps = 25/313 (7%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PTG 201 +P+ F R+ G E +A P L V Sbjct: 8 LPDLFVHRMRELLGPE-AEDFFEALRQPRSRGLRVNTLRARPDALAIRSPFSLSPVPWAP 66 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258 L P+ P + GV+++Q+ +A L VLDL AAPGGK++ Sbjct: 67 EGFLYHHPDRPGLHPWYDAGVYYIQEPAAMAAAVLLAPQPGEWVLDLAAAPGGKSSHLAA 126 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCS 317 + + + A + + RR L NL+RL + I + LFD VL+DAPC+ Sbjct: 127 RMENRGLLVANEPNPRRCRVLAQNLERLGVTNALITQEQPEALLRFAGLFDRVLLDAPCT 186 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 R+ P V I ++A + +L FV+PGG ++++ C+ +++E+V+ Sbjct: 187 GESMFRKDPSVTEAWSLRRITRNAERGQHILSVAADFVRPGGRLLYATCTFAPEENEQVI 246 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFF 434 + LR LVP A E R+ P DG F Sbjct: 247 ARFLRER-RDFHLVPAELPGSSPGRPEWADGNEELSRCCRLWPHRTPA--------DGHF 297 Query: 435 AVALRRL--IQPK 445 L R +P+ Sbjct: 298 YALLERAEDARPR 310 >gi|156974634|ref|YP_001445541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio harveyi ATCC BAA-1116] gi|156526228|gb|ABU71314.1| hypothetical protein VIBHAR_02352 [Vibrio harveyi ATCC BAA-1116] Length = 501 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 E KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 80 EAKGWKLSPVPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 139 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 140 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 199 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +V+ A Q+ L+ +KP Sbjct: 200 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQSSVVEIADTQKDLIESAFHALKP 259 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + AL+ EG++ I P Sbjct: 260 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAEAALTEEGFLHIFP 316 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 317 QVYDCE--------GFFVARIRKLT 333 >gi|315427045|dbj|BAJ48662.1| tRNA and rRNA cytosine-C5-methylases [Candidatus Caldiarchaeum subterraneum] Length = 320 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 11/236 (4%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + G + Q + + +L VLDLCAAPG KT + V A Sbjct: 87 LTDSLWHMLGYVYAQGPVSILVTELLDVEPGHWVLDLCAAPGSKTTHIAARLRGEGVVVA 146 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 DVS+ R++ L N+ R + + D F Y + +FD V++DAPC+S G + Sbjct: 147 NDVSRTRIKALSSNMQRCGVVNGVLTLADGRRFGYRYRGMFDRVMIDAPCTSLGIGSKDW 206 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 VL T + + Q LL G +KPGGI+++S C+ ++E VV +L Sbjct: 207 SVLRNWTTGSSARLSRLQTSLLFSGYMALKPGGILIYSTCTFHPFENETVVNNLLEK--- 263 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVALRR 440 E + ++ G +P++ + +I SG +GF+ +R+ Sbjct: 264 -FEEAEVLPIKLNGLECDWGFDEWGGRIFSPEVRKTVRIWPFQSGAEGFYIAKIRK 318 >gi|304384902|ref|ZP_07367248.1| NOL1/NOP2/sun family protein [Pediococcus acidilactici DSM 20284] gi|304329096|gb|EFL96316.1| NOL1/NOP2/sun family protein [Pediococcus acidilactici DSM 20284] Length = 460 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 17/301 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ FKE+ + G+E ++ + H + + Sbjct: 1 MRLPDGFKEKYQKLLGEEAQPFLASFDQAVEKGFRVNPLKGAAKLHDHSIDQPISYSDWG 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 + G+ + Q+ SA + ++ VLDLCAAPGGKT + Sbjct: 61 YYGKVN-GKTIDHQSGLVYSQEPSAMLVGEIAHPQPGQKVLDLCAAPGGKTTYLASFMAQ 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + ++++ R + L N++R + I+ D FD ++VDAPCS G Sbjct: 120 EGLLVTNEINRGRAKVLTENVERFGIQNAVILNESPDRLVKKFNGYFDLIVVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + + + A QR++L + + P G +V+S C+ ++ E+++ + Sbjct: 180 MFRKDPEAVEYWSLEYPEECARRQREILKSAMQLLAPNGNLVYSTCTFAPEEDEQIIAWL 239 Query: 381 LRSSPI-PVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 L + P +E V +PE IR+ P + G F Sbjct: 240 LENYPDLKMEPVARTENMDAGRPEWANGNPELAKAIRLFPHHFKGE--------GHFIAK 291 Query: 438 L 438 L Sbjct: 292 L 292 >gi|315931834|gb|EFV10789.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 327] Length = 279 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + S+ F E +++Q+ S+ + VLD+CAAPGGK+ + + + Sbjct: 57 LSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 116 Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S+ R L+ NL + A + + FD +L+DAPCS+ I + Sbjct: 117 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 176 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386 + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ L+ + Sbjct: 177 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 232 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + L + K+ RI P + DGFF LR+L Sbjct: 233 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 278 >gi|205355486|ref|ZP_03222257.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni CG8421] gi|205346720|gb|EDZ33352.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 279 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + S+ F E +++Q+ S+ + VLD+CAAPGGK+ + + + Sbjct: 57 LSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 116 Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S+ R L+ NL + A + + FD +L+DAPCS+ I + Sbjct: 117 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 176 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386 + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ L+ + Sbjct: 177 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 232 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + L + K+ RI P + DGFF LR+L Sbjct: 233 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 278 >gi|1772501|emb|CAA71351.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 22/246 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R ++ L + + + LL + LS +++ L+ +V TL+ Sbjct: 1 MKK-TSVRDIALEALIKLEQNQAYSNLLLKSVIKSN---ELSDQNRGLLTELVYGTLQNK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +L + + K + QLLR+S+ Q+ YL+ + D A + AVE AK + ++ Sbjct: 57 IALDYMLKPFINKP-QKVKPWVIQLLRLSLYQMEYLEKIPDRAAIHEAVEIAK-IRGHKG 114 Query: 120 FAKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 A VN +LR + RE + ++R+A + PEW + + YG E I Sbjct: 115 IASFVNGVLRSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIH 174 Query: 173 ISPLYIDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWW 224 + P L V A L+ +K L +I F G Sbjct: 175 LIPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGEVS 234 Query: 225 VQDASA 230 +QD S+ Sbjct: 235 IQDESS 240 >gi|146325696|sp|Q3IHA0|RSMF_PSEHT RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 482 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 18/257 (7%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250 +E ++ + G +VQ+AS+ +P + VLD+ + Sbjct: 68 WCEEGFWLERPAAEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIEHTNYVLDMAS 127 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305 APG KT+QL + + + A ++S RL+ L L R+ + + D F + Sbjct: 128 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMFE 187 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD++L+DAPCS GT+R+ D L D ++ A Q+ L+ +KPGG +V+S Sbjct: 188 CFDSILLDAPCSGEGTVRKDADALKNWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYST 247 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+L +++ V +L + L+ + + A +PEG++ + P + Sbjct: 248 CTLTPLENQHVCDFLLSEFGDCIIPESLSDLFP---GASKATTPEGYLHVWPQTFDSE-- 302 Query: 426 VSSGMDGFFAVALRRLI 442 GFF ++ Sbjct: 303 ------GFFIAKFKKQA 313 >gi|77360717|ref|YP_340292.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas haloplanktis TAC125] gi|76875628|emb|CAI86849.1| conserved protein of unknown function ; putative bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain [Pseudoalteromonas haloplanktis TAC125] Length = 495 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 18/257 (7%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250 +E ++ + G +VQ+AS+ +P + VLD+ + Sbjct: 81 WCEEGFWLERPAAEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIEHTNYVLDMAS 140 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305 APG KT+QL + + + A ++S RL+ L L R+ + + D F + Sbjct: 141 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMFE 200 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD++L+DAPCS GT+R+ D L D ++ A Q+ L+ +KPGG +V+S Sbjct: 201 CFDSILLDAPCSGEGTVRKDADALKNWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYST 260 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+L +++ V +L + L+ + + A +PEG++ + P + Sbjct: 261 CTLTPLENQHVCDFLLSEFGDCIIPESLSDLFP---GASKATTPEGYLHVWPQTFDSE-- 315 Query: 426 VSSGMDGFFAVALRRLI 442 GFF ++ Sbjct: 316 ------GFFIAKFKKQA 326 >gi|270292469|ref|ZP_06198680.1| NOL1/NOP2/sun family protein [Streptococcus sp. M143] gi|270278448|gb|EFA24294.1| NOL1/NOP2/sun family protein [Streptococcus sp. M143] Length = 434 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 24/298 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ Q + + Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + TD + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + EL+P+ + + + R+ P + F L Sbjct: 236 LDTY--DFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHL 279 >gi|317500362|ref|ZP_07958586.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316898117|gb|EFV20164.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 468 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 107/270 (39%), Gaps = 17/270 (6%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +++ +E L + G P + G++++Q+ SA P Sbjct: 41 ISIDRFLEIAPWPLRPIPWIENGFYYDGEKYQPAKHPYYFAGLYYLQEPSAMTPANRLPI 100 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294 VLD+CAAPGGK + + + A D+S R L N++ + + Sbjct: 101 EAGDRVLDVCAAPGGKATELGAKLNGSGVLIANDLSNSRARGLLKNIELFGIGNVLVLSE 160 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E + FD +L+DAPCS G R+ ++ + QR ++ Q Sbjct: 161 EPGKLVNYFPEYFDKILIDAPCSGEGMFRKDRKMVKAWEEHGPEFFVKIQRSIITQAAQM 220 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---- 410 +KPGG++++S C+ +++E+ ++ +L+ P + + +LS Sbjct: 221 LKPGGMLLYSTCTFSPEENEQTIEFLLQEYPQFKICDIKGYEGFSDGILKASLSGNEQLK 280 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 IRI P +E G F L++ Sbjct: 281 KTIRIFPHKMEGE--------GHFIALLKK 302 >gi|312220954|emb|CBY00895.1| hypothetical protein [Leptosphaeria maculans] Length = 377 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 16/216 (7%) Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N VLD+ AAPGGKT + + + + A D +K R + L N+ RL + Sbjct: 1 MALAPQENERVLDMTAAPGGKTTHIAALMKNTGCIFANDANKDRAKGLIGNIHRLGVRNA 60 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + A ++ FD VL+DAPCS TG I + V + D +K Q++L+L Sbjct: 61 IVCNYSALEFPRVMGGFDRVLLDAPCSGTGVIAKDASVKTNKTEADFMKLPHLQKQLILA 120 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 I V K GG +V+S CS+ +++E+VVQ L P V+LV + K Sbjct: 121 AIDSVDHHSKTGGYIVYSTCSVTVEENEQVVQYALNKRPN-VKLVETGLTFGK-----EG 174 Query: 407 LSPEGWIRITPD--MLEKIDGVSSGMDGFFAVALRR 440 + G P M+ + + +DGFF ++ Sbjct: 175 FTKIGGKIFHPSMKMVRRYYPHTYNVDGFFVAKFKK 210 >gi|332200844|gb|EGJ14916.1| nop2p [Streptococcus pneumoniae GA41317] Length = 434 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADCLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|293365714|ref|ZP_06612423.1| tRNA/rRNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307703658|ref|ZP_07640600.1| NOL1/NOP2/sun family protein [Streptococcus oralis ATCC 35037] gi|291316082|gb|EFE56526.1| tRNA/rRNA methyltransferase [Streptococcus oralis ATCC 35037] gi|307623065|gb|EFO02060.1| NOL1/NOP2/sun family protein [Streptococcus oralis ATCC 35037] Length = 434 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPEGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPNTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + GF + Q+ +A + Q+ L + VLDL AAPGGK+ Q + + Sbjct: 60 KVSGKSPEHVTGF----VYSQEPAAQMVAQVAQPLPGMKVLDLAAAPGGKSTQLAAYLAN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDVIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + + D + A QRK+L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWNIDYPNQCASLQRKILEDAVTMLAEGGRLVYSTCTWAPEENEEIVHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ M + + R+ P + F L+ Sbjct: 236 LDTY--DFELLPVEHVNGMVEGMDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|271500348|ref|YP_003333373.1| NOL1/NOP2/sun family RNA methylase [Dickeya dadantii Ech586] gi|270343903|gb|ACZ76668.1| RNA methylase, NOL1/NOP2/sun family [Dickeya dadantii Ech586] Length = 482 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 124/264 (46%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + ++ AV G L E + + G++++Q+AS+ +PV G Sbjct: 61 YGWEMEAVPWCHDGFWLLNADEEAMRLGNALEHLSGLFYIQEASSMLPVSALFMGHDTPE 120 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPG KT Q + + + A + S R++ L NL R + + D Sbjct: 121 RVLDMAAAPGSKTTQIAAHLNNQGLIVANEYSASRVKVLHANLHRCGVSNTTLTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR L+L +KPG Sbjct: 181 FGNALPETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRDLILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L+ Q++++V +++ P E+ L + ++ AL+ EG++ + P Sbjct: 241 GVLIYSTCTLNHQENQQVCHWLMQQFPGACEIESLKDLFPQA---HQALTDEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|294662567|pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 14/227 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G + Q+ SA I VLDLCAAPGGK+ Q + ++ + Sbjct: 82 HQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEIFPK 141 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + + + P FD ++VDAPCS G R+ P+ + Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGXFRKDPNAIKEW 201 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+++L I +K G +++S C+ +++EE++ ++ + P+ +E +P Sbjct: 202 TEESPLYCQKRQQEILSSAIKXLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 Query: 393 LNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + + E IRI P + G F L Sbjct: 262 LTQSVSSGRSEWGSVAGLEKTIRIWPHKDQGE--------GHFVAKL 300 >gi|28898386|ref|NP_797991.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio parahaemolyticus RIMD 2210633] gi|153839322|ref|ZP_01991989.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus AQ3810] gi|260366026|ref|ZP_05778504.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus K5030] gi|260876618|ref|ZP_05888973.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus AN-5034] gi|81839808|sp|Q87PA5|RSMF_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|28806603|dbj|BAC59875.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus RIMD 2210633] gi|149747154|gb|EDM58142.1| Sun/nucleolar protein family protein [Vibrio parahaemolyticus AQ3810] gi|308094319|gb|EFO44014.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus AN-5034] gi|308114205|gb|EFO51745.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus K5030] Length = 478 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 20/263 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 E L+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 EDKGWTLSPVPWCDNGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMKNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L+ + + AL+ EG++ I P Sbjct: 237 GGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDGLFE---NANAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF +R+ Sbjct: 294 QVYDCE--------GFFVARIRK 308 >gi|269962312|ref|ZP_06176663.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3] gi|269832972|gb|EEZ87080.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3] Length = 478 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 E KL+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 EAKGWKLSPVPWCETGFWIDADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNNESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVIEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + AL+ EG++ I P Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLEDLFE---NAEAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDCE--------GFFVARIRKLA 310 >gi|254168829|ref|ZP_04875670.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] gi|197622266|gb|EDY34840.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] Length = 301 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 13/254 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 KL + + + + G +++QD S+ PV +LD+ AA Sbjct: 56 KLEKYKNLNAYRIIDMPVKHPGATIEHSLGYYYIQDLSSMAPVLALNPQRGEKILDMAAA 115 Query: 252 PGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 PG KT + + + A D++ RL+ L NL+RL + I + DA F+ Sbjct: 116 PGSKTTMIAELMREGTIVANDINFNRLKSLGGNLERLGITNVIITKKDAKKGNFGIKFNK 175 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS GT+R++P + A Q+ +L V GGI+V+S C+ + Sbjct: 176 ILLDAPCSGEGTVRKNPWGFRVVGDREHKMLARNQKIMLKNASRHVNNGGIIVYSTCTFN 235 Query: 370 KQDSEEVVQKVLRS---SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 ++E VV+ + + P+ ++ + + E + RI P + Sbjct: 236 PWENEGVVEYGIETLGLKPVHFDIPIPHFKGVEEWRGEKYEYGEYYKRIYPHL------- 288 Query: 427 SSGMDGFFAVALRR 440 G F L++ Sbjct: 289 -EDTGGMFIAVLKK 301 >gi|163800839|ref|ZP_02194739.1| Sun/nucleolar protein family protein [Vibrio sp. AND4] gi|159175188|gb|EDP59985.1| Sun/nucleolar protein family protein [Vibrio sp. AND4] Length = 478 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 + KL+ V G + E + + G++++Q+AS+ +PV Sbjct: 57 DAKGWKLSPVPWCETGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMTNETF 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 SVLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DSVLDTAAAPGSKTTQIAALMNNEGILVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVIEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L + + +L+ EG++ I P Sbjct: 237 GGVMVYSTCTLSTEENQQVCHHLKETFGDAVEFESLKDLFE---NAETSLTDEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDCE--------GFFVARIRKLT 310 >gi|153814848|ref|ZP_01967516.1| hypothetical protein RUMTOR_01063 [Ruminococcus torques ATCC 27756] gi|331089630|ref|ZP_08338529.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847879|gb|EDK24797.1| hypothetical protein RUMTOR_01063 [Ruminococcus torques ATCC 27756] gi|330404998|gb|EGG84536.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium 3_1_46FAA] Length = 468 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 107/270 (39%), Gaps = 17/270 (6%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +++ +E L + G P + G++++Q+ SA P Sbjct: 41 ISIDRFLEIAPWPLRPIPWIENGFYYDGEKYQPAKHPYYFAGLYYLQEPSAMTPANRLPI 100 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294 VLD+CAAPGGK + + + A D+S R L N++ + + Sbjct: 101 EAGDRVLDVCAAPGGKATELGAKLNGSGVLIANDLSNSRARGLLKNIELFGIGNVLVLSE 160 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E + FD +L+DAPCS G R+ ++ + QR ++ Q Sbjct: 161 EPGKLVNYFPEYFDKILIDAPCSGEGMFRKDRKMVKAWEEHGPEFFVKIQRSIITQAAQM 220 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---- 410 +KPGG++++S C+ +++E+ ++ +L+ P + + +LS Sbjct: 221 LKPGGMLLYSTCTFSPEENEQTIEFLLQEYPQFKICDIKGYEGFSDGILKASLSGNEQLK 280 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 IRI P +E G F L++ Sbjct: 281 KTIRIFPHKMEGE--------GHFIALLKK 302 >gi|307706865|ref|ZP_07643667.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK321] gi|307617738|gb|EFN96903.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK321] Length = 434 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPISFPDAIPQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L+ + V + ID+ R+ P + F L+ Sbjct: 236 LKEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280 >gi|293401629|ref|ZP_06645771.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304887|gb|EFE46134.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 442 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 15/254 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + + + + P G++++Q+ SAS V++ VLD+CAA Sbjct: 51 ECKPSAICPETFYIPHQEKGLGNHPAHLAGLFYMQEPSASSAVEVLDVQEGDWVLDMCAA 110 Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKL 306 PGGK+ Q+ + + ++ +R L N++RL I D Sbjct: 111 PGGKSTQIAAKLQHSGLLVSNEIEAKRAAVLMSNMERLGFSECMITNARPDELAKEMGGW 170 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VLVDAPCS G ++H + + + A Q+ +L +K GI+V+S C Sbjct: 171 FDKVLVDAPCSGEGMFKKHAKAMDDWSVEHVASCAMRQKLILESAYETLKEEGILVYSTC 230 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + +++EEVV + L+ +EL+ + +S L RI P Sbjct: 231 TYSMEENEEVVYEFLKHH-DDMELLDCQVNFGRSGFSYRDLDVTKVRRIFP--------- 280 Query: 427 SSGMDGFFAVALRR 440 +G F +++ Sbjct: 281 MDQGEGHFVAKMKK 294 >gi|253688235|ref|YP_003017425.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495489|sp|C6DFU6|RSMF_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|251754813|gb|ACT12889.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 484 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 121/264 (45%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + +L + G L E + + G++++Q+AS+ +PV N Sbjct: 61 YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNEALE 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +VLD+ AAPG KT Q+ + + A + S R++ L N+ R + + D Sbjct: 121 TVLDVAAAPGSKTTQIAARLDNKGAIVANEYSASRVKVLHANISRCGVSNTAMTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I + A QR L+L +KPG Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSPESITEIAATQRDLILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L+KQ++++V + P E L + D A + +G++ + P Sbjct: 241 GVMIYSTCTLNKQENQQVCHWLQAQFPDACEFESLRDLF---TDAERATTEDGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|332637419|ref|ZP_08416282.1| tRNA and rRNA cytosine-C5-methylase [Weissella cibaria KACC 11862] Length = 466 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 18/226 (7%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ SA + +L VLDL AAPGGKT + + + ++ ++R L Sbjct: 78 IYSQEPSAQLVGELARPKPGERVLDLAAAPGGKTTHLASFMEQKGLLVSNEIFRKRAAIL 137 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R + + + PK FD +++DAPCS G R+ P + Sbjct: 138 SENVERFGVQNAIVTNHSPQELSPKFPQYFDKIVLDAPCSGEGMFRKDPAAIKYWHEHYP 197 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 ++A QR++L + + +KPGG +V+S C+ ++ E ++ ++ P +E+V + Sbjct: 198 EENATRQREILEEAVKMLKPGGQLVYSTCTFAPEEDERIIAWLISERP-DLEIVDADKYE 256 Query: 398 WKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALR 439 + R+ P + G F L Sbjct: 257 GMDDGKPEWADGNPDLKKTARLFPHHSDGE--------GHFMAKLV 294 >gi|307701939|ref|ZP_07638948.1| NOL1/NOP2/sun family protein [Streptococcus mitis NCTC 12261] gi|307616754|gb|EFN95942.1| NOL1/NOP2/sun family protein [Streptococcus mitis NCTC 12261] Length = 437 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + + E +A+ G Sbjct: 1 MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRINPLKEATVSFPDAIPQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILADAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVDHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280 >gi|262193849|ref|YP_003265058.1| tRNA (cytosine-5-)-methyltransferase [Haliangium ochraceum DSM 14365] gi|262077196|gb|ACY13165.1| tRNA (cytosine-5-)-methyltransferase [Haliangium ochraceum DSM 14365] Length = 499 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 19/293 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIE------TWAHKLNAVMLPTGGI---RLKELPESIV 213 + + DA ++P L + TW A + P + Sbjct: 24 DEWTNLRDALLAPQVPCLWLHPLRASAERVPTWLRADGAALEPMSWHPGGYRWRGARTPG 83 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 + G++ VQ+ ++ +PV L +LDLCAAPG KTAQ+ + V A D Sbjct: 84 LHWSYQAGLYHVQEEASMVPVALLAPEPGERILDLCAAPGNKTAQIALALGNRGTVVAND 143 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVL 329 S RL ++ + RL L + D Y ++ FD VLVDAPC++ G +R+ Sbjct: 144 RSGGRLAAIQNAVTRLGLCNVSMTGCDGTRYPRQRRRFDKVLVDAPCTAEGAVRKLRPTR 203 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 D+ +A QR+LL + I +PGG +V++ C+ +++E VV VLR+ P Sbjct: 204 VCSDSFRRQITA-VQRQLLARAICLTRPGGRIVYATCTFAPEENELVVDAVLRALPGAAR 262 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVALRR 440 L+P A + A ++ + P++ + D GFF L R Sbjct: 263 LLP---AEIPGLATAPGITAWQGRALAPELSRTLRLWPHLSDSGGFFCAVLER 312 >gi|261211631|ref|ZP_05925918.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341] gi|260838981|gb|EEX65613.1| ribosomal RNA small subunit methyltransferase F [Vibrio sp. RC341] Length = 473 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 21/275 (7%) Query: 178 IDLTVKFDIETWAH-KLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPV 234 I + + H +L+ V G + E + + G++++Q+AS+ +PV Sbjct: 47 ISVAEFCERAAEKHWQLSPVPWCENGFWIEADESLVPLGNTAEHMAGLFYIQEASSMMPV 106 Query: 235 Q--LFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 G SVLD+ AAPG KT Q+ + + + A + S R++ L N++R + Sbjct: 107 SALFMGNEQYDSVLDMAAAPGSKTTQIAALMDNAGVLVANEFSASRVKVLHANIERCGIR 166 Query: 290 AEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + D + + FDAVL+DAPCS GTIR+ PD + D I A Q+ L Sbjct: 167 NAALTNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDPDAMKNWSMDAIHSIASTQKAL 226 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 + +K GG +V+S C+L +++++V + ++ V L++ + ++ ++AL Sbjct: 227 IESAFQALKVGGTLVYSTCTLSLEENQQVCWHLKQTYGDAVSFESLDNLFEQA---SIAL 283 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + EG++ I P M + GFF +R+L Sbjct: 284 TEEGFLHIFPQMYDCE--------GFFVAKIRKLA 310 >gi|218562286|ref|YP_002344065.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112359992|emb|CAL34781.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 279 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 24/269 (8%) Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPES------IVSLPGFAEGVWWVQDASASIPVQLF 237 IE + L I + + S+ F E +++Q+ S+ + Sbjct: 23 TSIEELEKEFLKQNLKFKKINVYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNL 82 Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDI 293 SVLD+CAAPGGK+ + + + ++S+ R L+ NL + A + Sbjct: 83 EVKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFM 142 Query: 294 IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + FD +L+DAPCS+ I + + +I A Q+KLL + Sbjct: 143 KDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE----KSYKEIKNIAKTQKKLLHSALK 198 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +K GG +V+S C+ K+++EEV++ L+ + + + L + K+ Sbjct: 199 ALKIGGELVYSTCTFTKEENEEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKC 258 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 RI P + DGFF LR+L Sbjct: 259 RRILPSLDY---------DGFFIAKLRKL 278 >gi|330718860|ref|ZP_08313460.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc fallax KCTC 3537] Length = 468 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 32/243 (13%) Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRL 276 GV + Q+ SA ++ VLDL AAPGGK+ + + ++ R Sbjct: 74 NGVVYSQEPSAQFVGEVVQPQPGEKVLDLSAAPGGKSTHLAAFMQQDGLLWTNEIFLNRA 133 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + L N++R+ +Y + + K FD +L+DAPCS G R+ PD + Sbjct: 134 KILNENIERMGIYNSIVSSQKPEELSAKLPQFFDKILIDAPCSGEGMFRKDPDAISYWSE 193 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + A QR +L + + +KPGG +V+S C+ ++ E+++ +L P +VP+ Sbjct: 194 SYPAECAQRQRDILAEAVKMLKPGGELVYSTCTFAPEEDEQMIAWLLSEYP-DFSVVPIE 252 Query: 395 SAYWKSIDMAMALSPE------------------GWIRITPDMLEKIDGVSSGMDGFFAV 436 + + G R+ P +LE G F Sbjct: 253 KVNGIADGRPEWADSQYVSGISDHSQTTHMTELKGTARLWPHLLEGE--------GHFVA 304 Query: 437 ALR 439 L+ Sbjct: 305 KLK 307 >gi|259503456|ref|ZP_05746358.1| NOL1/NOP2/sun family protein [Lactobacillus antri DSM 16041] gi|259168534|gb|EEW53029.1| NOL1/NOP2/sun family protein [Lactobacillus antri DSM 16041] Length = 458 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 18/228 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G + Q+ SA ++ VLDLCAAPGGKT + + A ++ ++R Sbjct: 75 GAIYSQEPSAMYVGEVVAPQPGERVLDLCAAPGGKTTHLLAKMGGQGLLIANEIFRKRAL 134 Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L NL+R + + + FD +LVDAPCS G R+ P + D Sbjct: 135 VLAENLERWGTANTVVTNESPAELERQFPQFFDRILVDAPCSGEGMFRKEPAGMEYWTPD 194 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + A QRK+L + +KPGG +V+S C+ ++ E+ +L + P + +VP+ Sbjct: 195 YPAECANRQRKILASALKMLKPGGTLVYSTCTFAPEEDEQTAAWLLATYPG-LTMVPIKK 253 Query: 396 AYWKSIDMAMALSPE----GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +R+ P + G F + Sbjct: 254 YPGMDDGRPEWADGNPALANAVRLFPHHIAGE--------GHFIAKFQ 293 >gi|91085733|ref|XP_973505.1| PREDICTED: similar to CG6133 CG6133-PA [Tribolium castaneum] Length = 683 Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 114/318 (35%), Gaps = 57/318 (17%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L + W +L + K I G Q+ + IP L Sbjct: 111 LPWYPNKLAWQLELTRKDIRRCEAYYKLHNFLISETE---HGTISRQETVSMIPPLLLDV 167 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKV---------TALDVSKRRLEKLRCNLDRLHLYA 290 + VLD+CAAPG KTAQL+ A DV +R L RL+ Sbjct: 168 QPHHKVLDMCAAPGSKTAQLLEMLHSNDDPIPSGYVIANDVDNKRCYMLVHQAKRLNSPC 227 Query: 291 EDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 +I D+ + FD VL D PCS GT+R++PD+ + + Sbjct: 228 VAVINHDSAILPNLSASLPDGSMEQVQFDRVLCDVPCSGDGTLRKNPDIWMKWTPANGLN 287 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q ++L +G + GG +V+S CS++ ++E V+ ++L + ++LV ++S+ Sbjct: 288 LHGIQSRILRRGAELLTVGGRLVYSTCSINPIENEAVIHRLLSETDGALQLVDVSSSLPG 347 Query: 400 SIDMAMALS-----------------PEGWI-RITPDMLE---------------KIDGV 426 M + E W I P M +I Sbjct: 348 LKYMPGLENWLVGSRNLEFYSSYDEVDEKWQTTIRPQMFPPKSEDKHLYNLNRCMRILPH 407 Query: 427 SSGMDGFFAVALRRLIQP 444 FF L +L +P Sbjct: 408 HQNTGAFFVAVLEKL-KP 424 >gi|225859167|ref|YP_002740677.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 70585] gi|225719995|gb|ACO15849.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 70585] Length = 434 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLHYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|168483972|ref|ZP_02708924.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1873-00] gi|172042726|gb|EDT50772.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1873-00] gi|332201853|gb|EGJ15923.1| nop2p [Streptococcus pneumoniae GA47368] Length = 434 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADHLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|50121390|ref|YP_050557.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium atrosepticum SCRI1043] gi|81827103|sp|Q6D4C8|RSMF_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|49611916|emb|CAG75365.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 484 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 21/262 (8%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NL 243 + +L + G L E + + G++++Q+AS+ +P N Sbjct: 61 YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPASALFHHNDAPG 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 ++LD+ AAPG KT Q+ + + A + S R++ L N+ R + I D Sbjct: 121 TILDVAAAPGSKTTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR L+L +KPG Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L++Q++++V + + P E L+ + A + EG++ + P Sbjct: 241 GVMIYSTCTLNRQENQQVCRWLQAQFPDACEFESLDDLF---AGAERATTEEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRK 311 >gi|443991|emb|CAA54369.1| fmu [Escherichia coli K-12] Length = 238 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 97/241 (40%), Gaps = 11/241 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + +S +D+ L++ + LR L Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILP-----PLQQKVSDKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE--QAKRDKENR 118 ++D +++ ++ + K+ ++ L+ V + Q+LY + +A + VE A + + + Sbjct: 56 SQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVERRIAIKRPQLK 115 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 V +R E + + P W +RL+ Y E+ +I +A + Sbjct: 116 GLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPM 174 Query: 179 DLTV---KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L + ++W L+ + +R+ + L F + D Q Sbjct: 175 WLRINRTHHSRDSWLALLDEAGMKGFRMRITLMLYVWKHLHLFMRYLVLKTDGLPFRMHQ 234 Query: 236 L 236 Sbjct: 235 H 235 >gi|261821411|ref|YP_003259517.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium wasabiae WPP163] gi|261605424|gb|ACX87910.1| RNA methylase, NOL1/NOP2/sun family [Pectobacterium wasabiae WPP163] Length = 484 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 68/264 (25%), Positives = 123/264 (46%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-- 243 + +L + G L E + + G++++Q+AS+ +PV N+ Sbjct: 61 YGWQLEPIPWCQEGFWLLNTEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALG 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 ++LD+ AAPG KT Q+ + + A + S R++ L N+ R + I D Sbjct: 121 TILDVAAAPGSKTTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR L+L +KPG Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L++Q++++V + P E L+ + D +A + EG++ + P Sbjct: 241 GVMIYSTCTLNRQENQQVCHWLQAQFPDACEFESLDDLF---ADAELATTEEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|318078496|ref|ZP_07985828.1| RNA-binding Sun protein [Streptomyces sp. SA3_actF] Length = 685 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 93/275 (33%), Gaps = 28/275 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L ++ + RD L +V TLR D Sbjct: 22 PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V VE A+ + ++ V Sbjct: 82 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 140 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169 N++LRR+SR ++ + ++ + P W L + G R + + Sbjct: 141 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGV 222 A + L + L+A+ ++P +G Sbjct: 201 TADNERPEVTLVARPGRTDAEALLDALGEERALPGRWSPYAVRLTEGGEPGAVPAVRDGE 260 Query: 223 WWVQDASAS----IPVQLFGTLNNLSVLDLCAAPG 253 VQD + + + LD CA PG Sbjct: 261 AGVQDEGSQLVALALAKAPVEGRDALWLDACAGPG 295 >gi|320156455|ref|YP_004188834.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus MO6-24/O] gi|319931767|gb|ADV86631.1| ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus MO6-24/O] Length = 472 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 20/259 (7%) Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLDL 248 L+ V G + E + + G++++Q+AS+ +PV SVLD Sbjct: 63 LHPVPWCETGFWIKADESKVPLGNTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDT 122 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CP 303 AAPG KT Q+ + + + A + + R++ L N++R + + D + Sbjct: 123 AAAPGSKTTQIAALMNNQGILVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWL 182 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL+DAPCS GT+R+ D + + +++ A Q+ L+ +KPGG++V+ Sbjct: 183 PESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVY 242 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+L ++++++V + + V L+S + AL+ +G++ I P + + Sbjct: 243 STCTLSEEENQQVCHHLKHTFGDAVAFESLSSLF---DGAEKALTEDGFLHIFPQVYDSE 299 Query: 424 DGVSSGMDGFFAVALRRLI 442 GFF +R+L Sbjct: 300 --------GFFVARIRKLA 310 >gi|269215676|ref|ZP_06159530.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Slackia exigua ATCC 700122] gi|269131163|gb|EEZ62238.1| ribosomal RNA small subunit methyltransferase F (rRNA(cytosine-C(5)-)-methyltransferase RsmF) [Slackia exigua ATCC 700122] Length = 345 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 143/339 (42%), Gaps = 32/339 (9%) Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 R P +F+ER+E YG + I + C +P L Sbjct: 12 NDADRRIFSKEHARMETPSFPAYFRERVEEAYGADIARLILEGCSTPRRSSLRANALKAS 71 Query: 186 IETWAHKLNAVMLPTGGIRLKE--------LPESIVSLPGFAEGVWWVQDASASIPVQLF 237 A L+A + G+ E E++ F G ++Q+ S+ +P L Sbjct: 72 RNDVACALDAADISWKGVPWYEDAFLLDAGADEAMRETDAFERGEVYLQNLSSMLPALLL 131 Query: 238 GTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + +LD+CAAPGGKT Q ++TA ++ R EKL NL R Sbjct: 132 DARPDTDILDMCAAPGGKTTQIAAFAAAKARAGAPEVRITACEMHAPRSEKLAYNLKRQG 191 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD-VLWTRDTDDIVKSACFQRK 346 +A ++ DA FD +L+DAPC+ +GT+R H + K A QR Sbjct: 192 AHAVTVMRTDARRIDAFFRFDHILLDAPCTGSGTMRAHDPKAAARFTPHLLKKCAAAQRA 251 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL--RSSPIPVELVPLNSAYWKSIDMA 404 LL + ++ +KPGG +V+S CS+ +++E V++VL + EL+ + + + Sbjct: 252 LLDRALTVLKPGGTMVYSTCSILPEENERTVREVLGRKEHADRFELLSPALPTFDADRLR 311 Query: 405 MALSPEGWIRITPDMLEKIDGVS--SGMDGFFAVALRRL 441 L + P +E+ V +GFF V +RR+ Sbjct: 312 AELP------LLPCTMEEALCVRPTDAYEGFFMVKIRRV 344 >gi|121613038|ref|YP_001000337.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|121504215|gb|EAQ72967.2| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 279 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 19/263 (7%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + E L + ++I S+ F E +++Q+ S+ + Sbjct: 29 EKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQ 88 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAF 299 SVLD+CAAPGGK+ + + + ++S+ R L+ NL + A + + Sbjct: 89 SVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNI 148 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +L+DAPCS+ I + + +I A Q+KLL + +K GG Sbjct: 149 GNLCPLKFDKILLDAPCSTFAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGG 204 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 +V+S C+ K+++EEV++ L+ + + + L + K+ RI P Sbjct: 205 ELVYSTCTFTKEENEEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPS 264 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 + DGFF LR+L Sbjct: 265 LDY---------DGFFIAKLRKL 278 >gi|297288127|ref|XP_001110343.2| PREDICTED: putative methyltransferase NSUN5-like isoform 1 [Macaca mulatta] Length = 470 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 85/450 (18%), Positives = 169/450 (37%), Gaps = 40/450 (8%) Query: 9 LVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 V++ +L+ V ++ S+ + + + + A+V T R+ +DAV+ Sbjct: 5 AVAAGVLAGVENRQGSIKGLVYSSNFQNVKQ----------LYALVCETQRYSAVLDAVI 54 Query: 68 DFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH-FAKLVN 125 L+ + + + L ++L V ++L + + A+L Sbjct: 55 ASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKV 111 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 + + +E+ R +S +P + + + V S + D Sbjct: 112 HRGVSRNEDLLEVGSRPGPVSQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQG-RASSLDD 170 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + K + + + + P + G +QD ++ +P L V Sbjct: 171 LRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLNPPPGSHV 230 Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 +D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 231 IDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGISCCELAEEDFLAVS 290 Query: 303 PKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF-- 354 P +L+D CS +G R T + A FQ++ L ++F Sbjct: 291 PSDPRYREVHYILLDPSCSGSGMPSRQLEEPGAGTPSPARLHALAGFQQRALCHALTFPS 350 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +K +++S CSL ++++E+VV+ L+ +P L P A W ++ + +R Sbjct: 351 LK---RLIYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAKHCLR 406 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +P+ GFF + R+ P Sbjct: 407 ASPETTLSG--------GFFIAVIERVEAP 428 >gi|37679825|ref|NP_934434.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus YJ016] gi|37198570|dbj|BAC94405.1| sun/nucleolar protein family protein [Vibrio vulnificus YJ016] Length = 501 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 20/259 (7%) Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLDL 248 L+ V G + E + + G++++Q+AS+ +PV SVLD Sbjct: 92 LHPVPWCETGFWIEADESKVPLGNTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDT 151 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CP 303 AAPG KT Q+ + + + A + + R++ L N++R + + D + Sbjct: 152 AAAPGSKTTQIAALMNNQGILVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWL 211 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL+DAPCS GT+R+ D + + +++ A Q+ L+ +KPGG++V+ Sbjct: 212 PESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVY 271 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+L ++++++V + + V L+S + AL+ +G++ I P + + Sbjct: 272 STCTLSEEENQQVCHHLKHTFGDAVAFESLSSLF---DGAEKALTEDGFLHIFPQVYDSE 328 Query: 424 DGVSSGMDGFFAVALRRLI 442 GFF +R+L Sbjct: 329 --------GFFVARIRKLA 339 >gi|194397739|ref|YP_002038050.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae G54] gi|194357406|gb|ACF55854.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae G54] Length = 434 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARNFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ Q Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYXAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|251789449|ref|YP_003004170.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Dickeya zeae Ech1591] gi|247538070|gb|ACT06691.1| RNA methylase, NOL1/NOP2/sun family [Dickeya zeae Ech1591] Length = 482 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNL 243 + +L AV G L E + + G++++Q+AS+ +PV G Sbjct: 61 YGWELEAVPWCDDGFWLLNADEETMRLGNALEHLSGLFYIQEASSMLPVSALLLGNDTPE 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPG KT Q+ + + A + S R++ L NL R + + D Sbjct: 121 RVLDMAAAPGSKTTQIAARLHNQGVIIANEYSASRVKVLHANLHRCGVSNTALTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR+L+L +KPG Sbjct: 181 FGSALPETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L+ Q++++V + +++ P E+ L + + AL+ +G++ + P Sbjct: 241 GVLIYSTCTLNHQENQQVCRWLMQQFPDACEIESLKDLFPHA---HRALTEDGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|328473635|gb|EGF44470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio parahaemolyticus 10329] Length = 478 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 124/263 (47%), Gaps = 20/263 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 E L+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 EDKGWTLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMKNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L+ + + AL+ EG++ I P Sbjct: 237 GGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDGLFE---NANAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF +R+ Sbjct: 294 QVYDCE--------GFFVARIRK 308 >gi|315126373|ref|YP_004068376.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas sp. SM9913] gi|315014887|gb|ADT68225.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas sp. SM9913] Length = 524 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 111/255 (43%), Gaps = 18/255 (7%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCA 250 +E ++ + G +VQ+AS+ +P + +VLD+ + Sbjct: 113 WCDEGFWLERPNDEEQNLALGNTDLHLSGAMYVQEASSMLPPMALKQSLQTSNTVLDMAS 172 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKK 305 APG KT+QL + + + A ++S RL+ L L R+ + + D F + Sbjct: 173 APGSKTSQLAALMNNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVVFGNYMFE 232 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD++L+DAPCS GT+R+ D L + + A Q+ L+ +KPGG +V+S Sbjct: 233 CFDSILLDAPCSGEGTVRKDSDALKNWSIESNITIAQVQKDLIKSAFYALKPGGTLVYST 292 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+L ++++V +L + L+ + A + EG++ + P + Sbjct: 293 CTLTPLENQQVCSALLDEFGEYISPESLSDLFP---GADKATTTEGYLHVWPQTFDSE-- 347 Query: 426 VSSGMDGFFAVALRR 440 GFF ++ Sbjct: 348 ------GFFIAKFKK 356 >gi|300797713|ref|NP_001178522.1| NOL1/NOP2/Sun domain family, member 5 [Rattus norvegicus] gi|109497090|ref|XP_001071177.1| PREDICTED: NOL1/NOP2/Sun domain family, member 5 [Rattus norvegicus] gi|149063048|gb|EDM13371.1| NOL1/NOP2/Sun domain family, member 5 (predicted) [Rattus norvegicus] Length = 451 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 90/442 (20%), Positives = 169/442 (38%), Gaps = 38/442 (8%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ +L+ V ++ SL L+ S F+ L Q + A+V T R+ +DAV+ Sbjct: 7 AAAVLAGVESRQGSLKGLV----YSSNFQNLKQ-----LYALVCETQRYSAVLDAVIASA 57 Query: 71 -LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L+ + + + L ++L V + L L R + + R Sbjct: 58 GLLRAEKKLRPHLAKVL---VYE-LLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHR 113 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 VSR + L +R +P + + ++ + S + D+ T Sbjct: 114 GVSRNEDLLQERPGQAHQVPRFVRVNTLKTCPEDAIDYFKRQGFSYQG-RASSLEDLRTL 172 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + + + + P + G +QD ++ +P L V+D C Sbjct: 173 KGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDAC 232 Query: 250 AAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--- 303 AAPG KT+ + + K+ A D +RL + L R + ++ E D P Sbjct: 233 AAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLLARAGVSCCEVAEKDFLTVSPSDQ 292 Query: 304 -KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPG 358 +L+D CS +G + R T + + A FQ++ L + F ++ Sbjct: 293 RYGQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERLQALAGFQQRALCHALRFPSLQ-- 350 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 +V+S CSL ++++E+VVQ+ L+ + L P+ W ++ E +R +P+ Sbjct: 351 -RLVYSTCSLCQEENEDVVQEALQQNSGTFRLAPVLPT-WPHRGLSTFPGSEHCLRASPE 408 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 GFF R Sbjct: 409 TTL--------TGGFFIAVFER 422 >gi|18977925|ref|NP_579282.1| nol1-nop2-sun family nucleolar protein I [Pyrococcus furiosus DSM 3638] gi|18893693|gb|AAL81677.1| putative nucleolar protein I (nol1-nop2-sun family) [Pyrococcus furiosus DSM 3638] Length = 311 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 17/271 (6%) Query: 179 DLTVKFDIETWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 L + +L + G +K + L ++ G+ Q+AS+ IP + Sbjct: 47 HLNEIKSLLEEKFELEPIPWTKGEGFFIKRYEVNFGELIEYSLGLIIPQEASSMIPPVVL 106 Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD+ AAPG KT Q + + + A D + R L NL++ + + Sbjct: 107 DPQPGELVLDMAAAPGSKTTQIAQYMNNEGCIIANDAKRDRANILISNLNKAGVLIAKVT 166 Query: 295 EMDA-FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 D + + FD +L+DAPCSS G IR++ T + + Q++L+L Sbjct: 167 VKDGAYFRRYENTFDKILLDAPCSSVGMIRKNFKFARTWSMGKVYYHSKLQKRLILAAYK 226 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE- 410 +KPGG++V+S C++D ++EEVV +L+ + +E + PL S S E Sbjct: 227 ALKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKINLPLKSTEPVLEWEGKKYSDEL 286 Query: 411 -GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +RI P + + F+ +R+ Sbjct: 287 KKTLRIHPQD--------NDTEAFYIAKIRK 309 >gi|294778263|ref|ZP_06743689.1| NOL1/NOP2/sun family protein [Bacteroides vulgatus PC510] gi|294447891|gb|EFG16465.1| NOL1/NOP2/sun family protein [Bacteroides vulgatus PC510] Length = 475 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 19/302 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F+ R + G+E A+ A + + + V + W+ ++ + + Sbjct: 1 MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVAGEPVLWASAGV 58 Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260 P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 59 YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHARSV 118 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D ++FD VL D PCS Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + TD++ QR++L +KPGG++++S C+ ++++ EE V Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEENVA 238 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + VP+ S + ++A P R P ++ GFF L Sbjct: 239 WIADELGAEILKVPVASEWGIIGNLAGQDFP--VYRFLPHRVKGE--------GFFLAVL 288 Query: 439 RR 440 R+ Sbjct: 289 RK 290 >gi|254882762|ref|ZP_05255472.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 4_3_47FAA] gi|319643930|ref|ZP_07998505.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_40A] gi|254835555|gb|EET15864.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 4_3_47FAA] gi|317384454|gb|EFV65421.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_40A] Length = 475 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 127/302 (42%), Gaps = 19/302 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F+ R + G+E A+ A + + + V + W+ ++ + + Sbjct: 1 MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVAGEPVLWASAGV 58 Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260 P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 59 YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHARSV 118 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D ++FD VL D PCS Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + TD++ QR++L +KPGG++++S C+ ++++ EE V Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEENVA 238 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + VP+ S + ++A P R P ++ GFF L Sbjct: 239 WIADELGAEILKVPVASEWGIIGNLAGQDFP--VYRFLPHRVKGE--------GFFLAVL 288 Query: 439 RR 440 R+ Sbjct: 289 RK 290 >gi|315038492|ref|YP_004032060.1| nucleolar protein [Lactobacillus amylovorus GRL 1112] gi|312276625|gb|ADQ59265.1| putative nucleolar protein [Lactobacillus amylovorus GRL 1112] Length = 457 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 17/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P+ FK++ + G E+ + A V + Sbjct: 3 NLPKDFKDKYRDLLGAEQAEKMFTAMNESSKKAFRVNTLKNKTQISYSLDNPVPEIKHAY 62 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263 S P + G + QD +A P + VLDLCAAPGGKT + + + Sbjct: 63 YGEIS-GEDPEWVSGYVYSQDPAAMFPAAISTVKPGEKVLDLCAAPGGKTTALGEQLKNK 121 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 + A ++S R + LR N++R + + + FD +LVDAPCS G Sbjct: 122 GLLVANEISISRAKILRENVERWGISNALVTNETPENLAAAFPDFFDVILVDAPCSGEGM 181 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++P + ++ A QR +L + + +KPGG +V+S C+ ++ E++V + Sbjct: 182 FRKNPAAIDYWSQAYVLTCAQRQRMILAEAVKMLKPGGRLVYSTCTFAPEEDEKIVNWLT 241 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMA---LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + + + +R P FA L Sbjct: 242 QEYDFTILDSQIKDERVSAGRPEWGNDNPDLTRTLRFWPQDGVGEGQ--------FAAIL 293 Query: 439 RR 440 ++ Sbjct: 294 QK 295 >gi|27365942|ref|NP_761470.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio vulnificus CMCP6] gi|81844637|sp|Q8D9F3|RSMF_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|146325711|sp|Q7MKY6|RSMF_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|27362091|gb|AAO10997.1| Ribosomal RNA small subunit methyltransferase F [Vibrio vulnificus CMCP6] Length = 472 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 124/259 (47%), Gaps = 20/259 (7%) Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLDL 248 L+ V G + E + + G++++Q+AS+ +PV SVLD Sbjct: 63 LHPVPWCETGFWIEADESKVPLGNTAEHMCGLFYIQEASSMMPVSALFLGENQFESVLDT 122 Query: 249 CAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CP 303 AAPG KT Q+ + + + A + + R++ L N++R + + D + Sbjct: 123 AAAPGSKTTQIAALMNNQGILVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGGWL 182 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL+DAPCS GT+R+ D + + +++ A Q+ L+ +KPGG++V+ Sbjct: 183 PESFDAVLLDAPCSGEGTVRKDEDAMKNWSQESVLEIAATQKDLIESAFQALKPGGVMVY 242 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C+L ++++++V + + V L+S + AL+ +G++ I P + + Sbjct: 243 STCTLSEEENQQVCHHLKHTFGDAVAFESLSSLF---DGAEKALTEDGFLHIFPQVYDSE 299 Query: 424 DGVSSGMDGFFAVALRRLI 442 GFF +R+L Sbjct: 300 --------GFFVARIRKLA 310 >gi|325956908|ref|YP_004292320.1| nucleolar protein [Lactobacillus acidophilus 30SC] gi|325333473|gb|ADZ07381.1| nucleolar protein [Lactobacillus acidophilus 30SC] Length = 457 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 17/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P+ FK++ + G E+ + A V + Sbjct: 3 NLPKDFKDKYRDLLGAEQAEKMFTAMNESSKKAFRVNTLKNKTQISYSLDNPVPEIKHAY 62 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263 S P + G + QD +A P + VLDLCAAPGGKT + + + Sbjct: 63 YGEIS-GEDPEWVSGYVYSQDPAAMFPATISTVKPGEKVLDLCAAPGGKTTALGEQLKNK 121 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 + A ++S R + LR N++R + + + FD +LVDAPCS G Sbjct: 122 GLLVANEISISRAKILRENVERWGISNALVTNETPENLAAAFPDFFDVILVDAPCSGEGM 181 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++P + ++ A QR +L + + +KPGG +V+S C+ ++ E++V + Sbjct: 182 FRKNPAAIDYWSQAYVLICAQRQRMILAEAVKMLKPGGRLVYSTCTFAPEEDEKIVNWLT 241 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMA---LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + + + +R P FA L Sbjct: 242 QEYDFTILDSQIKDERVSAGRPEWGNDNPDLTRTLRFWPQDGVGEGQ--------FAAIL 293 Query: 439 RR 440 ++ Sbjct: 294 QK 295 >gi|229815613|ref|ZP_04445940.1| hypothetical protein COLINT_02664 [Collinsella intestinalis DSM 13280] gi|229808843|gb|EEP44618.1| hypothetical protein COLINT_02664 [Collinsella intestinalis DSM 13280] Length = 339 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 136/314 (43%), Gaps = 20/314 (6%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 E +E L + + R ++ + V ++ V L Sbjct: 25 ERTRELLADGFDAARARPVTLRANTLKATSDQVSAALDAAGIGYARVPWYEDAFVLDGAR 84 Query: 210 ES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265 E + L + +G+ ++Q S+ +P + L +LD+C+APGGKT+Q+ +GA Sbjct: 85 EREVWGLDIYRDGLVYLQSLSSMLPPLILDPLTGADILDMCSAPGGKTSQIAALTTNGAH 144 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR- 324 +TA ++S R EKL NLD+L +I+ DA FD +L+DAPC+ TGT R Sbjct: 145 LTACEMSAPRAEKLAYNLDKLGAQNVNIMRTDARRLDEFFSFDQILLDAPCTGTGTYRTG 204 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + K QR LL + ++ +KPGG + +S CS+ ++++E V+ L+ Sbjct: 205 DERAEKRMTPQLLDKVVRSQRALLDRALTVLKPGGTLAYSTCSVLPEENDEQVRAALKRH 264 Query: 385 ------PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM-------D 431 P+ V + + + +A + EG + P M + + Sbjct: 265 RDCKVVPVLAGNVDDGQSDPEERIITIAHADEGEL-AWPIMNLPNSLEGTLTLAPTRLYE 323 Query: 432 GFFAVALRRLIQPK 445 GF+ +++ P+ Sbjct: 324 GFYVAVIQKQA-PR 336 >gi|14591319|ref|NP_143397.1| nucleolar protein [Pyrococcus horikoshii OT3] gi|3257964|dbj|BAA30647.1| 312aa long hypothetical nucleolar protein [Pyrococcus horikoshii OT3] Length = 312 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 19/268 (7%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +E G + + L ++ G+ Q+AS+ IP + + Sbjct: 55 LEEKFELERIPWTKGEGFYINSYSVNYGELIEYSLGLIIPQEASSMIPPVVLDPKPGELI 114 Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD+ AAPG KT Q + + + A D + R L NL R + + D Y Sbjct: 115 LDMAAAPGSKTTQIAQYMENDGCIIANDAKRDRANILIANLTRAGVLIAKVTVRDGAHYA 174 Query: 303 P-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD +L+DAPCSS G IR++ T + + Q+KL+L +KPGG++ Sbjct: 175 KYEDTFDRILLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKKLILAAYRALKPGGVL 234 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELV--PLNSAYWKSIDMAMALSPE--GWIRITP 417 V+S C++D ++EEVV +L+ + ++ + P+ S S E IRI P Sbjct: 235 VYSTCTVDPLENEEVVDYLLQKTDAKLKKINLPIKSTEPVLEWEGRRYSEELKKTIRIHP 294 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + + F+ ++I+PK Sbjct: 295 QD--------NDTEAFYIA---KIIKPK 311 >gi|168491306|ref|ZP_02715449.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC0288-04] gi|183574356|gb|EDT94884.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC0288-04] Length = 434 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHTTGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKIFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|327183687|gb|AEA32134.1| nucleolar protein [Lactobacillus amylovorus GRL 1118] Length = 457 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 17/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P+ FK++ + G E+ + A V + Sbjct: 3 NLPKDFKDKYRDLLGAEQAEKMFTAMNESSKKAFRVNTLKNKTQISYSLDNPVPEIKHAY 62 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263 S P + G + QD +A P + VLDLCAAPGGKT + + + Sbjct: 63 YGEIS-GEDPEWVSGYVYSQDPAAMFPAAISTVKPGEKVLDLCAAPGGKTTALGEQLKNK 121 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 + A ++S R + LR N++R + + + FD +LVDAPCS G Sbjct: 122 GLLVANEISISRAKILRENVERWGISNALVTNETPENLAAAFPDFFDVILVDAPCSGEGM 181 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++P + ++ A QR +L + + +KPGG +V+S C+ ++ E++V + Sbjct: 182 FRKNPAAINYWSQAYVLTCAQRQRMILAEAVKMLKPGGRLVYSTCTFAPEEDEKIVNWLT 241 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMA---LSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + + + +R P FA L Sbjct: 242 QEYDFTILDSQIKDERVSAGRPEWGNDNPDLTRTLRFWPQDGVGEGQ--------FAAIL 293 Query: 439 RR 440 ++ Sbjct: 294 QK 295 >gi|307709068|ref|ZP_07645527.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK564] gi|307620014|gb|EFN99131.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK564] Length = 434 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPVSFPDAIPQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280 >gi|168493306|ref|ZP_02717449.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC3059-06] gi|225854849|ref|YP_002736361.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae JJA] gi|183576723|gb|EDT97251.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC3059-06] gi|225722175|gb|ACO18028.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae JJA] Length = 434 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|149011643|ref|ZP_01832839.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP19-BS75] gi|221232142|ref|YP_002511295.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae ATCC 700669] gi|147764074|gb|EDK71006.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP19-BS75] gi|220674603|emb|CAR69166.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae ATCC 700669] Length = 434 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|116516379|ref|YP_816700.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae D39] gi|148997544|ref|ZP_01825149.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP11-BS70] gi|149002792|ref|ZP_01827718.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS69] gi|168575861|ref|ZP_02721776.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae MLV-016] gi|182684360|ref|YP_001836107.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CGSP14] gi|237649322|ref|ZP_04523574.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CCRI 1974] gi|237820947|ref|ZP_04596792.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CCRI 1974M2] gi|303254557|ref|ZP_07340661.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS455] gi|303258998|ref|ZP_07344977.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP-BS293] gi|303261682|ref|ZP_07347629.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS292] gi|303264351|ref|ZP_07350271.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS397] gi|303265850|ref|ZP_07351747.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS457] gi|303268183|ref|ZP_07353982.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS458] gi|307068055|ref|YP_003877021.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae AP200] gi|116076955|gb|ABJ54675.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae D39] gi|147756599|gb|EDK63640.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP11-BS70] gi|147759086|gb|EDK66080.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS69] gi|182629694|gb|ACB90642.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CGSP14] gi|183578178|gb|EDT98706.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae MLV-016] gi|302598525|gb|EFL65567.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS455] gi|302637262|gb|EFL67750.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP14-BS292] gi|302639941|gb|EFL70397.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP-BS293] gi|302642262|gb|EFL72610.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS458] gi|302644585|gb|EFL74835.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS457] gi|302646163|gb|EFL76390.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae BS397] gi|306409592|gb|ADM85019.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae AP200] gi|332074983|gb|EGI85455.1| nop2p [Streptococcus pneumoniae GA41301] Length = 434 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|227111581|ref|ZP_03825237.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 484 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + +L + G L E + + G++++Q+AS+ +PV N+ Sbjct: 61 YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALD 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +VLD+ AAPG KT Q+ + + A + S R++ L N+ R + I D Sbjct: 121 TVLDVAAAPGSKTTQIAARLNNEGAIVANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR L+L +KPG Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L++Q++++V + P E L++ + D A + EG++ + P Sbjct: 241 GVMIYSTCTLNRQENQQVCHWLQTQFPDACEFESLHALF---TDAEHATTEEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|116492681|ref|YP_804416.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC 25745] gi|116102831|gb|ABJ67974.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC 25745] Length = 458 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 16/230 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G+ + Q+ SA + + VLDLCAAPGGKT + + + ++++ Sbjct: 72 HQSGLVYSQEPSAMLVGEFAHPKPGQKVLDLCAAPGGKTTYLASFMDQQGLLVSNEINRG 131 Query: 275 RLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + L N++R + I+ D + FD ++VDAPCS G R+ P + Sbjct: 132 RAKILAENVERFGIQNAVILNESPDRMEDRFANYFDVIVVDAPCSGEGMFRKDPAAMEYW 191 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELV 391 + D + A QR++L + + P G +V+S C+ ++ E+++ +L + + V Sbjct: 192 NKDYPSECANRQREILKSAMKMLAPKGTLVYSTCTFAPEEDEQIIAWLLDNYENLALVDV 251 Query: 392 PLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 P +PE +R+ P + G F L Sbjct: 252 PKQDDMDAGRPEWADGNPELTKAVRLFPHHFQGE--------GHFMAKLV 293 >gi|283956050|ref|ZP_06373537.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792370|gb|EFC31152.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni 1336] Length = 292 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 120/304 (39%), Gaps = 27/304 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKEL 208 R+E Y K+ + I + + + V E + L I Sbjct: 1 MLSRIEKLYTKDEMQNILSSFTQEKNVCVFVNTLKISTEELEKEFLKQNLKFKKINAYCY 60 Query: 209 PES------IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + S+ F E +++Q+ S+ + SVLD+CAAPGGK+ Sbjct: 61 LFDAKDKAILSSMKVFNEAYFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANF 120 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++S+ R L+ NL + A + + FD +L+DAPCS+ Sbjct: 121 MQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCST 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + +I A Q+KLL + +K GG +++S C+ K+++EEV++ Sbjct: 181 FAKIGFDLE----KSYKEIKNIAKTQKKLLHSALKALKIGGELIYSTCTFTKEENEEVIE 236 Query: 379 KVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + + L + K RI P + DGFF Sbjct: 237 NALKSEFKLELLDIDLENVEAKVGQSEEFAEISKCRRILPSLDY---------DGFFIAK 287 Query: 438 LRRL 441 LR+L Sbjct: 288 LRKL 291 >gi|225574656|ref|ZP_03783266.1| hypothetical protein RUMHYD_02733 [Blautia hydrogenotrophica DSM 10507] gi|225038124|gb|EEG48370.1| hypothetical protein RUMHYD_02733 [Blautia hydrogenotrophica DSM 10507] Length = 444 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 16/255 (6%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P + G++++Q+ SA P +VLDLCAAPGGK Sbjct: 45 PWVPNGYFYPSEVRPSLHPYYRAGLYYLQEPSAMTPAACLPVTPGEAVLDLCAAPGGKAT 104 Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLV 312 +L + A D+S R L NL+ + + + F +L+ Sbjct: 105 ELATKLAGQGILVANDISASRARALLRNLELFGASNIFVTNEIPEKMTRYFPEFFHKILL 164 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + + Q++L+L + PGG++++S C+ + Sbjct: 165 DAPCSGEGMFRKDDSLAADWSVEKSENLSKLQKELILTASKMLMPGGLLLYSTCTFAPAE 224 Query: 373 SEEVVQKVL-RSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSG 429 EE++ +L + + + + +P + + +PE +RI P + Sbjct: 225 DEEIISFLLNQRNDMHLVSLPDYPGFSSGVPEWADQNPELAKCVRIWPHKM--------N 276 Query: 430 MDGFFAVALRRLIQP 444 +G F L++ +P Sbjct: 277 GEGHFLALLKKEGEP 291 >gi|227536029|ref|ZP_03966078.1| tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227244142|gb|EEI94157.1| tRNA/rRNA methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 453 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 28/321 (8%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +I+P +L + I + + T A +A +P Sbjct: 1 MSNILPNSLIRKLGANPLFDEQAFIDIHEKGERQSSIRINEKKITAAPFAHAEPIPWCDR 60 Query: 204 RLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKT-- 256 +L P + G ++ QDAS+ + L LDLCAAPGGKT Sbjct: 61 GFYLEERPSFTLDPLYHAGCYYSQDASSMFISHIIQHLKLDGEPLKALDLCAAPGGKTTL 120 Query: 257 -AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDA 314 + + + A ++ K R+ L N+ R I D FD +L+DA Sbjct: 121 LNSYLHPQSLLVANEIIKTRVPILMENMVRWGNSNVVITNNDPSAFKRLPGYFDLLLIDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS +G R+ + ++ + Q+++L + + +K GI+++S CS ++++E Sbjct: 181 PCSGSGMFRKDSGAIDEWSEANVKLCSERQQRILAEAMDCLKTDGILLYSTCSYSQEENE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ +++ + +P+ + + + G+ R P ++ GFF Sbjct: 241 DIADWLVKEYGLKSIQIPVGEEWGIEETQSDISACFGY-RFYPHKVKGE--------GFF 291 Query: 435 AVAL----------RRLIQPK 445 A R+ I+P+ Sbjct: 292 ITAFVKTEFQETFNRKKIKPE 312 >gi|254573536|ref|XP_002493877.1| S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase [Pichia pastoris GS115] gi|238033676|emb|CAY71698.1| S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase [Pichia pastoris GS115] gi|328354302|emb|CCA40699.1| hypothetical protein PP7435_Chr4-0535 [Pichia pastoris CBS 7435] Length = 711 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 98/264 (37%), Gaps = 43/264 (16%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDVSKR 274 Q+A + IP + + VLD+CAAPG KT+Q V A D + Sbjct: 160 ISRQEAVSMIPPLVLDVKPHHYVLDMCAAPGSKTSQLVEALHAEDKEPSGFVMANDSDYK 219 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---------LFDAVLVDAPCSSTGTIRRH 325 R L + RL+ ++ DA + K FD VL D PC+ T+R++ Sbjct: 220 RSHMLVHQVKRLNSANFIVVNHDAQMFPKMKLTPESQEYIKFDRVLCDVPCTGDATMRKN 279 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 +V + + Q +L +GI ++ GG +V+S CSL+ ++E VV LR Sbjct: 280 INVWTNWTPGNAIGLHPLQLNILNRGIQLLQRGGRLVYSTCSLNPIENEAVVAAALRQWG 339 Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWIR----------ITP-----------DM 419 + LV + I + +R + P D Sbjct: 340 DQIRLVDCSDRLPGLKRVPGISNWKVFGKDMELREKGADDIHATVFPPTEEEAKNFNLDR 399 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443 ++ GFF ++ + Sbjct: 400 CIRVYPHLQNTGGFFITVFEKIDK 423 >gi|307131294|ref|YP_003883310.1| Ribosomal RNA small subunit methyltransferase F [Dickeya dadantii 3937] gi|306528823|gb|ADM98753.1| Ribosomal RNA small subunit methyltransferase F [Dickeya dadantii 3937] Length = 482 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + +L AV G L E + + G++++Q+AS+ +PV G Sbjct: 61 YGWELEAVPWCDEGFWLLNADEEAMRLGNALEHLAGLFYIQEASSMLPVSALFMGDDAPE 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD+ AAPG KT Q+ + + A + S R++ L NL R + + D Sbjct: 121 RVLDMAAAPGSKTTQIAARLNNQGLIVANEYSASRVKVLHANLHRCGVSNTALTHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR+L+L +KPG Sbjct: 181 FGNALPETFDAILLDAPCSGEGVVRKDPAAMSHWSLESIADIAATQRELILSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L+ Q+++ V + +++ P E+ L + ++ AL+ +G++ + P Sbjct: 241 GVLIYSTCTLNHQENQHVCRWLMQQFPDACEVESLKDLFPQA---HHALTEDGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|227328622|ref|ZP_03832646.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 484 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 21/264 (7%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--L 243 + +L + G L E + + G++++Q+AS+ +PV N+ Sbjct: 61 YGWQLEPIPWCQEGFWLLNAEEENTRLGNTLEHLSGLFYIQEASSMLPVSALFHRNDALE 120 Query: 244 SVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +VLD+ AAPG KT Q+ + + A + S R++ L N+ R + I D Sbjct: 121 TVLDVAAAPGSKTTQIAARLNNEGAIIANEYSASRVKVLHANISRCGVSNTAITHFDGRV 180 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ P + + I A QR L++ +KPG Sbjct: 181 FGAALPEYFDAILLDAPCSGEGVVRKDPAAMSHWSQESITDIAATQRDLIMSAFHALKPG 240 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G++++S C+L++ ++++V + P E L+ + D A + EG++ + P Sbjct: 241 GVMIYSTCTLNRHENQQVCHWLQAQFPDACEFESLHDLF---TDAERATTEEGFLHVFPQ 297 Query: 419 MLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF LR+ Sbjct: 298 IYDSE--------GFFVARLRKTA 313 >gi|90407006|ref|ZP_01215196.1| Sun/nucleolar protein family protein [Psychromonas sp. CNPT3] gi|90311877|gb|EAS39972.1| Sun/nucleolar protein family protein [Psychromonas sp. CNPT3] Length = 481 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 61/264 (23%), Positives = 122/264 (46%), Gaps = 22/264 (8%) Query: 191 HKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIP----VQLFGTLNNLS 244 +L+++ T G + + + + G+ ++Q+AS+ +P F T + + Sbjct: 61 WQLSSIPWCTEGFWIDAGEQLTPLGNSFEHLSGLCYLQEASSMLPVSALSHFFKTDEHST 120 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +LD+ AAPG KT Q + + + A + S R++ L N+ R + + D + Sbjct: 121 ILDMAAAPGSKTTQLAAQMNNQGLLIANEYSASRVKILHANMQRCGIKNVALTHFDGKIF 180 Query: 302 --CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + FDA+L+DAPCS GT+R+ + I A Q+ L+ +K G Sbjct: 181 GSWLENTFDAILLDAPCSGEGTVRKDKHAMKNWSQSSIESIALTQQALIESAFYALKEDG 240 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 I+V+S C+L ++++++ + VE + L+ + A + EG++ + P + Sbjct: 241 ILVYSTCTLSLEENQDICHALKERFTDCVEFLNLSDLF---KGADKAATTEGFLHVWPQI 297 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443 + +GFF A+R++ + Sbjct: 298 YD--------TEGFFVAAIRKVGK 313 >gi|332073709|gb|EGI84188.1| nop2p [Streptococcus pneumoniae GA17570] Length = 434 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----EKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|218132205|ref|ZP_03461009.1| hypothetical protein BACPEC_00062 [Bacteroides pectinophilus ATCC 43243] gi|217992898|gb|EEC58898.1| hypothetical protein BACPEC_00062 [Bacteroides pectinophilus ATCC 43243] Length = 460 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 112/299 (37%), Gaps = 23/299 (7%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML------PTGGIRLKELPE 210 + A D+ Y L V T L + Sbjct: 11 MKDMLGDEFDAYLDSFNDSRYYGLRVNTLKITPEEFLRISPFELKPIPWIENGFYFSEND 70 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVT 267 P + G++++Q+ SA P + + ++LD+CAAPGGK+ + + + Sbjct: 71 KPAKHPYYYAGLYYIQEPSAMTPANVLPVNEDDAILDMCAAPGGKSTELGAKLNHTGMLV 130 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325 D+S R + L N++ + ++ D FD +++DAPCS G R+ Sbjct: 131 TNDISNSRAKALLKNIEVFGIPNVLVMSEDPKKLVSYYPEFFDKIMIDAPCSGEGMFRKD 190 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 ++ + + + Q+ +LL +KPGGI+ +S C+ K + EE ++ +L P Sbjct: 191 NKLIKSWEKNGPEFYHEIQKGVLLAASKMLKPGGIMQYSTCTFSKLEDEESIRYILNECP 250 Query: 386 I----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V+ S ++ + +RI P + G F +++ Sbjct: 251 ELKLIDVKPYEGFSHGYEDDGQERDMQMSKTVRIWPHRMAGE--------GHFVALIKK 301 >gi|218506565|ref|ZP_03504443.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil 5] Length = 153 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 3/148 (2%) Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D + P + FDA+++DAPCSSTGT RRHPDVLWT+ +DI + A Q +LL + Sbjct: 7 TVVADLTTFKPAEGFDAIVLDAPCSSTGTTRRHPDVLWTKGPEDIARLAALQERLLRHAL 66 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + +KP G +VFSNCSLD + EEVV +VL + +E V +++ W ++ A ++P G Sbjct: 67 TLLKPLGTLVFSNCSLDPAEGEEVVARVLSDT-DAIERVAISAGDWPGLEAA--ITPLGE 123 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 R P ML+ +G++SG+DGF+A LRR Sbjct: 124 FRTLPTMLKMPEGIASGLDGFYAAVLRR 151 >gi|148985643|ref|ZP_01818797.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP3-BS71] gi|147922124|gb|EDK73246.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP3-BS71] gi|301800267|emb|CBW32887.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae OXC141] Length = 434 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ E + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGEEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKKPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L +L+P+ + + + R+ P + F L+ Sbjct: 236 LEEY--DFDLLPVEHINGMVAGIDLQETA----RMYPHQFKGEGQ--------FVAHLQ 280 >gi|327389588|gb|EGE87933.1| nop2p [Streptococcus pneumoniae GA04375] Length = 434 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|270010113|gb|EFA06561.1| hypothetical protein TcasGA2_TC009472 [Tribolium castaneum] Length = 614 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 114/318 (35%), Gaps = 57/318 (17%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 L + W +L + K I G Q+ + IP L Sbjct: 111 LPWYPNKLAWQLELTRKDIRRCEAYYKLHNFLISETE---HGTISRQETVSMIPPLLLDV 167 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKV---------TALDVSKRRLEKLRCNLDRLHLYA 290 + VLD+CAAPG KTAQL+ A DV +R L RL+ Sbjct: 168 QPHHKVLDMCAAPGSKTAQLLEMLHSNDDPIPSGYVIANDVDNKRCYMLVHQAKRLNSPC 227 Query: 291 EDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 +I D+ + FD VL D PCS GT+R++PD+ + + Sbjct: 228 VAVINHDSAILPNLSASLPDGSMEQVQFDRVLCDVPCSGDGTLRKNPDIWMKWTPANGLN 287 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 Q ++L +G + GG +V+S CS++ ++E V+ ++L + ++LV ++S+ Sbjct: 288 LHGIQSRILRRGAELLTVGGRLVYSTCSINPIENEAVIHRLLSETDGALQLVDVSSSLPG 347 Query: 400 SIDMAMALS-----------------PEGWI-RITPDMLE---------------KIDGV 426 M + E W I P M +I Sbjct: 348 LKYMPGLENWLVGSRNLEFYSSYDEVDEKWQTTIRPQMFPPKSEDKHLYNLNRCMRILPH 407 Query: 427 SSGMDGFFAVALRRLIQP 444 FF L +L +P Sbjct: 408 HQNTGAFFVAVLEKL-KP 424 >gi|148993038|ref|ZP_01822632.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP9-BS68] gi|168489567|ref|ZP_02713766.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP195] gi|225857037|ref|YP_002738548.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae P1031] gi|147928239|gb|EDK79256.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP9-BS68] gi|183571889|gb|EDT92417.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP195] gi|225724613|gb|ACO20465.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae P1031] gi|301794442|emb|CBW36876.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae INV104] Length = 434 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|88857244|ref|ZP_01131887.1| tRNA and rRNA cytosine-C5-methylase [Pseudoalteromonas tunicata D2] gi|88820441|gb|EAR30253.1| tRNA and rRNA cytosine-C5-methylase [Pseudoalteromonas tunicata D2] Length = 409 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 69/439 (15%), Positives = 150/439 (34%), Gaps = 53/439 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +L+ V + + L + + + +D ++ I +R L + Sbjct: 16 EAVLTILNNVAQAQCPLDKAYAQHFFNFDYA---SQDHAVITQITGDMVRKLNLYSFITG 72 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + L + + + + +E +++ +N Sbjct: 73 NTITH-ITSNPAVLFYA---------WSKI-EQQTIPSFIELTQQEIDNVEQLIDTAKHN 121 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + L + + W +ER + I + ++L + E Sbjct: 122 QSLMDGCPAWLNTLGENELADSWPQER--SALALAAKRFIRANLLKTNTVELQKTLEKEH 179 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 +L + S+ F G++ QD + + ++ + V+D Sbjct: 180 ITTRLIS---DCVTALEITSNSSLFKSLAFKNGLFEQQDVGSQLIIEALDVKPGMRVIDA 236 Query: 249 CAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCP 303 C+ GGKT A + ++ A+D+ + +L L+ R + Sbjct: 237 CSGAGGKTLGLAAYMKGKGRLLAMDIEEHKLAALKQRAKRAGADNIETRLITSSKTIKRL 296 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC-FQRKLLLQGISFVKPGGIVV 362 K+ D +L+D PCS G ++R+PD W D + + + Q+ +L + +K GI+V Sbjct: 297 KESADRLLLDVPCSGLGVLKRNPDAKWHSDMSESLPTLRHLQQDILTRYSKMLKVDGIMV 356 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++E V L+++P + Sbjct: 357 YATCSILPSENELQVSAFLKANPNYKLINET----------------------------T 388 Query: 423 IDGVSSGMDGFFAVALRRL 441 I SG DGF+ +L+R+ Sbjct: 389 ISPAQSGFDGFYFASLQRI 407 >gi|205373323|ref|ZP_03226127.1| hypothetical protein Bcoam_08355 [Bacillus coahuilensis m4-4] Length = 192 Score = 130 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 19/204 (9%) Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +LD CAAPGGKT + + V ALD+ K ++ ++ N DRL L +D+ Sbjct: 1 MILDACAAPGGKTTHIAERLNNTGVVEALDLHKHKVALIKQNADRLQLTNVTTHTLDSRK 60 Query: 301 YCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 ++ FD +LVDAPCS G +RR PD+ + ++ D+ Q ++L + +K Sbjct: 61 ANELFKEECFDRILVDAPCSGLGVVRRKPDIKYAKNEKDLNSLQRIQLEILNRVAPLLKK 120 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GGI+V+S C++D+ +++ VQ+ L+ P + ++ + + ++I P Sbjct: 121 GGILVYSTCTVDQIENDGTVQQFLKEHHDF---EPAHLNTPEA--LQAFKQEDYKLQIFP 175 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 G DGFF + R+ Sbjct: 176 QDF--------GGDGFFISSFRKK 191 >gi|260901577|ref|ZP_05909972.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus AQ4037] gi|308108539|gb|EFO46079.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus AQ4037] Length = 478 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 124/263 (47%), Gaps = 20/263 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNN 242 + L+ V G + E + + G++++Q+AS+ +PV + Sbjct: 57 DDKGWTLSPVPWCDTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 DAVLDTAAAPGSKTTQIAALMKNEGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GT+R+ D + +++ A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTVRKDEDAMKNWTQASVLEIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+L +++++V + + VE L+ + + AL+ EG++ I P Sbjct: 237 GGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDGLFE---NANAALTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + GFF +R+ Sbjct: 294 QVYDCE--------GFFVARIRK 308 >gi|14520839|ref|NP_126314.1| proliferating-cell nucleolar antigen P120, putative [Pyrococcus abyssi GE5] gi|74581685|sp|Q9V106|TRCM_PYRAB RecName: Full=tRNA (cytosine-5-)-methyltransferase gi|5458055|emb|CAB49545.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5] Length = 311 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 8/259 (3%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +E G +K + L ++ G+ Q+AS+ IP + + + Sbjct: 55 LEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVI 114 Query: 246 LDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301 LD+ AAPG K AQ + + + A D + R L NL R + + D + Sbjct: 115 LDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFA 174 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD VL+DAPCSS G IR++ T + + Q++L+L +KPGG++ Sbjct: 175 RYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVL 234 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C++D ++EEVV +L+ + +E V L + + +R Sbjct: 235 VYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVR----KTI 290 Query: 422 KIDGVSSGMDGFFAVALRR 440 +I + + F+ +R+ Sbjct: 291 RIHPQDNDTEAFYIAKIRK 309 >gi|330796031|ref|XP_003286073.1| hypothetical protein DICPUDRAFT_30335 [Dictyostelium purpureum] gi|325083981|gb|EGC37420.1| hypothetical protein DICPUDRAFT_30335 [Dictyostelium purpureum] Length = 717 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 105/284 (36%), Gaps = 60/284 (21%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------------------- 259 +G Q+A + IP ++ +LD+CAAPG KT Q+ Sbjct: 160 QQGNITRQEAVSMIPPLFLDVQSHHRILDMCAAPGSKTTQILEDLHMKHNIEVNLDVEKP 219 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAV 310 + + A DV R L RL A I +A ++ D + Sbjct: 220 SAYIPKGSIIANDVDTNRCYMLAHQTSRLGSPAIIITNHEAQNFPLLYDSNNEPMYLDRI 279 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++P+V + + Q ++ +G +K GG +V+S CS++ Sbjct: 280 LCDVPCSGDGTSRKNPEVWKKWNFSGGIGLHTLQLRIATRGCHLLKVGGRIVYSTCSMNP 339 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS-----PEG-------------- 411 ++E V+ +L+ S ++LV ++S Y + + EG Sbjct: 340 VENEAVIAALLKRSEGSMKLVDVSSQYPDLVRSPGIYTWPVTDKEGTYANWDELDELKKN 399 Query: 412 --WIRITP-----------DMLEKIDGVSSGMDGFFAVALRRLI 442 + + P + ++ GFF L ++ Sbjct: 400 KYFKTLWPSTEEEAKKMHLEYCMRVYPHQQNTGGFFIAVLEKVA 443 >gi|309809906|ref|ZP_07703754.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D] gi|308169694|gb|EFO71739.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D] Length = 284 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 23/290 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNLALNNALEKSK---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + ++ + +Q ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPDEQDDVQYMSIKYSYPQWLVKYCLDNFGKAKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKR 274 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ ++ Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEHLTTGKVFALDIHQK 283 >gi|51891972|ref|YP_074663.1| putative rRNA methylase [Symbiobacterium thermophilum IAM 14863] gi|51855661|dbj|BAD39819.1| putative rRNA methylase [Symbiobacterium thermophilum IAM 14863] Length = 492 Score = 130 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 112/273 (41%), Gaps = 24/273 (8%) Query: 186 IETWAHK--LNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 E A + L A +P L P P A G+++ Q+ SA + L G Sbjct: 57 REELAERMGLTAEPVPWNPDGLYCPPSLRPGWHPYHAAGLYYGQEPSAMVVAPLVGARPG 116 Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLDL AAPGGKT Q + + + A +V R+ L NL+RL + ++ Sbjct: 117 ERVLDLAAAPGGKTTQLAAQMENRGLLVANEVDPGRVRALVENLERLGITCAAVVSERPE 176 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FD VLVDAPCS G R+ P+V D A Q ++L + ++P Sbjct: 177 RLAERLPGFFDRVLVDAPCSGEGMFRKTPEVRDRWRPDMPEACARVQGEILNSAVELLRP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALSPEGWI-- 413 GG +V+S C+ +++EEV+ ++L + L P+ + + + Sbjct: 237 GGRLVYSTCTFAPEENEEVLLQLLTRRADLRMLPLPPVPGIAPGRPEWTRDPARAATVGV 296 Query: 414 ----RITPDMLEKIDGVSSGMDGFFAVALRRLI 442 R+ P + G F L R+ Sbjct: 297 GLAGRLWPHRVRGE--------GHFVAVLERVA 321 >gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] Length = 291 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 72/202 (35%), Gaps = 17/202 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + + RD L +V TLR D Sbjct: 20 PVRILAFEALRAVDERDAYANLVLPPLLKKAREKDDFDGRDAALATELVYGTLRRQGTYD 79 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V +VE A+ + AK V Sbjct: 80 AIIAACIDRPLREVDPPVLDVLALGAHQLLGTRIPTHAAVSASVELARVVLGD-GRAKFV 138 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR++S+ ++ +A + P W L + G R + Sbjct: 139 NAVLRKISQHDMDAWLERVAPPYDEDAEDHLAVVHSHPRWIVSALWDSLGGGRAGIEDLL 198 Query: 170 DACISPLYIDLTVKFDIETWAH 191 +A + L + T Sbjct: 199 EADNERPEVTLVARPGRSTTGE 220 >gi|148926623|ref|ZP_01810304.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845142|gb|EDK22237.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 232 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + S+ F E +++Q+ S+ + VLD+CAAPGGK+ + + + Sbjct: 10 LSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 69 Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S+ R L+ NL + A + + FD +L+DAPCS+ I + Sbjct: 70 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 129 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386 + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ L+ + Sbjct: 130 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 185 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + L + K+ RI P + DGFF LR+L Sbjct: 186 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 231 >gi|57236949|ref|YP_178750.1| NOL1/NOP2/sun family protein [Campylobacter jejuni RM1221] gi|57165753|gb|AAW34532.1| NOL1/NOP2/sun family protein [Campylobacter jejuni RM1221] Length = 279 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 18/235 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + S+ F E +++Q+ S+ + VLD+CAAPGGK+ + + + Sbjct: 57 LSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTGYLAC 116 Query: 269 LDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S+ R L+ NL + A + + FD +L+DAPCS+ I + Sbjct: 117 NEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKIGFDLE 176 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-SSPI 386 + +I A Q+KLL + +K GG +V+S C+ K+++EEV++ L+ + Sbjct: 177 ----KSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENALKSEFKL 232 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + L + K+ RI P + DGFF LR+L Sbjct: 233 ELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDY---------DGFFIAKLRKL 278 >gi|309775876|ref|ZP_07670870.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916414|gb|EFP62160.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 444 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 15/254 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + + + + G++++Q+ SAS V++ + VLD+CAA Sbjct: 53 DCRPSAICPQSFYIPKDLKGLGNHVAHLAGLFYMQEPSASSAVEVLDVQSGDWVLDMCAA 112 Query: 252 PGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--L 306 PGGK+ Q+ + + ++ +R L N++RL I + Sbjct: 113 PGGKSTQIAAKLKDSGFLVSNEIDSKRAGILLSNMERLGFSRCMITNTRPQQIAKEMGGW 172 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VLVDAPCS G ++H + + + Q+ +L + +K GI+V+S C Sbjct: 173 FDRVLVDAPCSGEGMFKKHSKAMEDWSEEHVKACGQRQQHILDSAYTALKKDGILVYSTC 232 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + +++E+V+ L+S +ELV ++ +S L E RI P Sbjct: 233 TYAMEENEQVIYAFLQSH-SDMELVDCGVSFGRSGLPYEKLEHEKLRRIFP--------- 282 Query: 427 SSGMDGFFAVALRR 440 +G F L++ Sbjct: 283 MDQGEGHFVAKLKK 296 >gi|149191346|ref|ZP_01869599.1| m5C methyltransferase [Vibrio shilonii AK1] gi|148834825|gb|EDL51809.1| m5C methyltransferase [Vibrio shilonii AK1] Length = 448 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 20/261 (7%) Query: 191 HKLNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVL 246 +L + G + E + + G++++Q+AS+ +P G +VL Sbjct: 37 WELTTIPWCEEGFWIDADESTVPLGNTAEHMAGLFYIQEASSMLPPSALFCGDDKFEAVL 96 Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301 D+ AAPG KT Q+ + + + A + + R++ L N++R + + DA + Sbjct: 97 DMAAAPGSKTTQIAALMNNEGVLVANEFAASRVKVLHANIERCGVSNVAMSNYDARVFGG 156 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDA+L+DAPCS GT+R+ D + A Q+ L+ +K GG + Sbjct: 157 WLPEQFDAILLDAPCSGEGTVRKDADAMKNWSLASTKDIAQTQKDLIESAFHALKVGGSL 216 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+L +++++V + ++ VE+ L + D A + EG++ + P + Sbjct: 217 VYSTCALSPEENQQVALHLTQTFGNAVEITSLQQLFP---DAEKATTQEGFLHVFPQTYD 273 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 GFF ++ Sbjct: 274 SE--------GFFIAKFKKTA 286 >gi|238916962|ref|YP_002930479.1| hypothetical protein EUBELI_01031 [Eubacterium eligens ATCC 27750] gi|238872322|gb|ACR72032.1| Hypothetical protein EUBELI_01031 [Eubacterium eligens ATCC 27750] Length = 442 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 14/249 (5%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + P + G++++Q+ SA P + V D+CAAPGGK+ Sbjct: 48 PWIENGFYYSEDDKPAKHPYYFAGLYYIQEPSAMTPANVLPIDEGDVVFDMCAAPGGKST 107 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLV 312 + + + D+S R + L N++ + ++ D + FD VL+ Sbjct: 108 ELAAKLNKTGLLITNDISNSRAKALLKNVEVFGVPNLCVLNEDPVGIASRFSGFFDKVLI 167 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ ++ + + + QR ++L G +KPGG +++S C+ K + Sbjct: 168 DAPCSGEGMFRKDNKLIKAWEKNGPEFYSQIQRNIILAGADMLKPGGKLLYSTCTFSKLE 227 Query: 373 SEEVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 E+ V +L + P + + + D E +RI P + Sbjct: 228 DEDSVIHLLTNRPDMHLIDIKPYEGFSHGFDTDEGYHLEKAVRIFPHKMPGE-------- 279 Query: 432 GFFAVALRR 440 G F + Sbjct: 280 GHFVALFEK 288 >gi|14591725|ref|NP_143813.1| nucleolar protein [Pyrococcus horikoshii OT3] gi|3258435|dbj|BAA31118.1| 389aa long hypothetical nucleolar protein [Pyrococcus horikoshii OT3] Length = 389 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 23/235 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 S+ L F +G ++ Q + + ++ + ++D+ AAPGGKT + + ++ Sbjct: 171 SLSELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEII 230 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHP 326 A+D SK RL K+ N+ RL + +++MDA D +L+DAPC++ G P Sbjct: 231 AIDKSKNRLRKMEENIKRLGVKNVKLVQMDARKLPDLGIKADKILLDAPCTALGV---RP 287 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + R I +A +QR + I ++ GG++V+S C+L +++E V K + + Sbjct: 288 KLWEERTLKHIEATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEGNV-KFMIRKGM 346 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +E + + R P GFF LR++ Sbjct: 347 KLEEQSIFIGSP-------GIGMNKVQRFYPH--------KHLTQGFFIAKLRKV 386 >gi|295109450|emb|CBL23403.1| NOL1/NOP2/sun family putative RNA methylase [Ruminococcus obeum A2-162] Length = 469 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 102/252 (40%), Gaps = 18/252 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 P + G++++Q+ SA P ++LDLCAAPGGK Sbjct: 65 PWIPNGYFYPGDVRPSFCPLYQAGLYYLQEPSAMTPASCLPVTPGENILDLCAAPGGKAT 124 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLV 312 ++ + A D+S R L N++ + + + F +L+ Sbjct: 125 ALGAMLNGSGLLVANDISSSRTRALLRNIELFGIANAFVTNETPAHLKNRFPEFFHKILL 184 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + + + Q++L+LQ ++PGG +++S C+ ++ Sbjct: 185 DAPCSGEGMFRKEDALARDWTPEKSEELSVLQKELILQAADMLRPGGQLLYSTCTFAPKE 244 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDMLEKIDGVSS 428 E VV +L + P ++L+ L + + + + + + + P ++ Sbjct: 245 DEGVVSYLLENRP-DMKLIELPAYEGFTPGVPAWGNGDPALSRCVHLFPHKMQGE----- 298 Query: 429 GMDGFFAVALRR 440 G F LR+ Sbjct: 299 ---GHFMALLRK 307 >gi|262275788|ref|ZP_06053597.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae CIP 101886] gi|262219596|gb|EEY70912.1| ribosomal RNA small subunit methyltransferase F [Grimontia hollisae CIP 101886] Length = 476 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 71/262 (27%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 191 HKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL--SV 245 KL+ V G L + E + + G++++Q+AS+ +PV V Sbjct: 61 WKLSPVPWCDTGFWLDDYDEDTVPLGNTAEHMAGLFYIQEASSMLPVTALLQNTTELEYV 120 Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301 LD+ AAPG KT Q+ + + A + S R++ L NL R + + D + Sbjct: 121 LDMAAAPGSKTTQIAAALNNNGVLVANEYSASRVKVLHANLLRCGVLNTALTNYDGRVFG 180 Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 ++FDAVL+DAPCS GTIR+ D + + + A QR L+ +KPGG+ Sbjct: 181 GWLPEMFDAVLLDAPCSGEGTIRKDADAFSNWSLESVQEIAQTQRDLITSAFHALKPGGV 240 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L+ +++ + + + VE PLN+ + A + EG++ + P + Sbjct: 241 MVYSTCTLNHDENQHICHYIKETFGDAVEFEPLNNLFE---GAEAACTDEGFLHVFPQIF 297 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 + GFF LR+ Sbjct: 298 DSE--------GFFVAKLRKTA 311 >gi|145353308|ref|XP_001420960.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|145357455|ref|XP_001422934.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581196|gb|ABO99253.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144583178|gb|ABP01293.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 700 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 99/277 (35%), Gaps = 64/277 (23%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV------------TALD 270 Q+A + IP + +LD+CA+PG KT Q++ A D Sbjct: 137 ISRQEAVSMIPPFFLDAQPHHRILDMCASPGSKTFQILERMHGDFDGNTKLPTGIVVAND 196 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIR 323 V +R L R + + +A +Y FDA+L D PCS T+R Sbjct: 197 VDLKRCNLLTHQTKRANSPTLLVTNHEAQNYPIIKGPKGELFDFDAILCDVPCSGDATMR 256 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + PD+ + Q ++ +G +K GG +V+S CSL+ ++E VV +L+ Sbjct: 257 KAPDIWNRWTPGNGNGLHTLQLRIAARGAQLLKVGGRLVYSTCSLNPIENEAVVAALLKE 316 Query: 384 SPIPVELVPLNSAYWK------------------------------------SIDMAMAL 407 +EL+ ++ S + L Sbjct: 317 CDGALELLDVSDELPDLKRSPGLRDWQVWDKFGYHPSFRGEEQMFKLCETMFSDEETKKL 376 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 E +R+ P + GFF +++ +P Sbjct: 377 PLERCLRLLPHHQD--------TGGFFVAVFQKV-KP 404 >gi|332535364|ref|ZP_08411157.1| ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas haloplanktis ANT/505] gi|332035192|gb|EGI71701.1| ribosomal RNA small subunit methyltransferase F [Pseudoalteromonas haloplanktis ANT/505] Length = 483 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 22/259 (8%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ------LFGTLNNLSVL 246 + +E ++ + G +VQ+AS+ +P F N +VL Sbjct: 68 WCSEGFWLERPSDEEQNLALGNTDLHLSGAMYVQEASSMLPPIALKQSIEFADSQNNTVL 127 Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDY 301 D+ +APG KT+QL + + + A ++S RL+ L L R+ + + D F Sbjct: 128 DIASAPGSKTSQLAALMDNQGVLVANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGN 187 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD++L+DAPCS GT+R+ D L + ++ A Q+ L+ +KPGG + Sbjct: 188 YMFECFDSILLDAPCSGEGTVRKDADALKNWSIESNIQIAQVQKDLIKSAFYALKPGGTL 247 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+L ++++V +L + L+ + + A + EG++ + P + Sbjct: 248 VYSTCTLTPLENQQVCDYLLSEFGDFIAPESLSDLFE---GASKATTSEGYLHVWPQTFD 304 Query: 422 KIDGVSSGMDGFFAVALRR 440 GFF ++ Sbjct: 305 SE--------GFFIAKFKK 315 >gi|443992|emb|CAA54370.1| fmv [Escherichia coli K-12] Length = 191 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 27/213 (12%) Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 + N +LDLCAAPGGKT + A+V A+D+ ++RL ++ NL RL + A Sbjct: 1 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT 60 Query: 292 DIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + D +C ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L Sbjct: 61 -VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEIL 119 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +K GG +V++ CS+ +++ ++ L+ + ++ + Sbjct: 120 DAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADA--------------ELCETGT 165 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 PE ++ + DGFF L + Sbjct: 166 PE-------QPGKQNLPGAEEGDGFFYAKLIKK 191 >gi|134301049|ref|YP_001114545.1| Fmu (Sun) domain-containing protein [Desulfotomaculum reducens MI-1] gi|134053749|gb|ABO51720.1| Fmu (Sun) domain protein [Desulfotomaculum reducens MI-1] Length = 470 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 109/258 (42%), Gaps = 33/258 (12%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E + + G E P + G++++Q+ SA +P +L G VL Sbjct: 54 ELLSFLEEPIAWSKDGFYYNEATTRPAKHPYYYAGLYYIQEPSAMLPAELLGAQPGERVL 113 Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 DLCAAPGGK+ QL + D+ +R L N++R + ++ Sbjct: 114 DLCAAPGGKSLQLAAHLGRKGLLVTNDLHPQRARVLLKNIERYGVANAIVLNETPSHLAK 173 Query: 304 KK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD +LVDAPCS G R+ PD+ +++ K A +Q+++L S ++PGG V Sbjct: 174 VFAGFFDRILVDAPCSGEGMFRKEPDMAKEWSPEEVNKYARWQQEILEAVPSLLRPGGEV 233 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+ +++E+ +Q + P ELV L R+ P ++ Sbjct: 234 VYSTCTFSPEENEQQMQSFVAKYP-DFELVELR-------------------RLWPHQVK 273 Query: 422 KIDGVSSGMDGFFAVALR 439 G F L+ Sbjct: 274 GE--------GHFVAKLK 283 >gi|297293960|ref|XP_002804365.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like [Macaca mulatta] Length = 736 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 61/262 (23%), Positives = 97/262 (37%), Gaps = 48/262 (18%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGW------------IRITPDMLEKIDGVSSGM 430 S +EL ++ + ++ + +RI P Sbjct: 338 KSEGALELADVSD-ELPGLKWMPGITQWKFRSVNFIYVYIFSLRILPHHQ--------NT 388 Query: 431 DGFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 389 GGFFVAVLVKKSSMPWNKRQPK 410 >gi|82539126|ref|XP_723976.1| RNA methyltransferase [Plasmodium yoelii yoelii str. 17XNL] gi|23478457|gb|EAA15541.1| RNA methyltransferase, putative [Plasmodium yoelii yoelii] Length = 376 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 138/432 (31%), Gaps = 89/432 (20%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 L + L + + + RD+ + V ++ + + Sbjct: 20 SPLDIYMRLYFKSN---NIKNRDKPYISEHVYNIIKNKTLLAYL---------------- 60 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 + V L K + + +N+ Sbjct: 61 ------------------SSPVSLYTNIIKTYFSSDKWKYEMNNE-----------KIPA 91 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLP 199 P+ ++L N YG+++ + + I L V + L + + Sbjct: 92 HVRYSFPKELYDQLVNCYGEKKSITLMSILNEKAPIFLRVNTNKISRNDLYKNLMSKGIS 151 Query: 200 TGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 L + + ++ + +G + +QD ++ I VLD CA G Sbjct: 152 VEKCVNSPSGLLLTKNQILKNIHEYKKGYFEIQDEASQIVSSKIPVKPGDKVLDYCAGSG 211 Query: 254 GK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 GK + + + K+ D+ R L + + L R + ++ + D Sbjct: 212 GKTLAFSGSMENTGKIYLHDIRDRMLSQAKIRLRRAGIQNYILLNSNHILLKKLFGYMDI 271 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 V+VDAPC+ TG +RR+P++ + + + + QRK+ + + ++K G +V+ CS+ Sbjct: 272 VVVDAPCTGTGALRRNPEMKYKFTNEKLYEYMNLQRKIFEKALFYLKKNGKIVYITCSIL 331 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ + + + + P +S S Sbjct: 332 DAENVHQAKYFCQKHNLYLSEPPFHS----------------------------LPQSKS 363 Query: 430 MDGFFAVALRRL 441 MDGFF R Sbjct: 364 MDGFFLAIFERK 375 >gi|209559511|ref|YP_002285983.1| Putative nucleolar protein [Streptococcus pyogenes NZ131] gi|209540712|gb|ACI61288.1| Putative nucleolar protein [Streptococcus pyogenes NZ131] Length = 436 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGVRNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|197124616|ref|YP_002136567.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K] gi|196174465|gb|ACG75438.1| Fmu (Sun) domain protein [Anaeromyxobacter sp. K] Length = 410 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 87/438 (19%), Positives = 145/438 (33%), Gaps = 61/438 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 L+ V+ ++ A L ++ V + + R+ A L L Sbjct: 20 LAEVLAGGA-AERVVTRALR--ARPALDAPGRVAVAEAIFGVGLWRRRLRAQLGDPLAPP 76 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 L+ L A+ + + Sbjct: 77 ALLLAALLRDL----------------------------GGREAAVAEALAGVPAGALPP 108 Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHK 192 A +P W L+ G E + C+ ++ + A + Sbjct: 109 PRPPPAAPADRFSLPGWLDAELDAAAGPEADALAAALCLPGPVALRANRLRIEPAALAAR 168 Query: 193 LNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 L A + T L ++ L + EG+ VQD + + + G +V Sbjct: 169 LGAEGVRTRPGALARACLVVEGPRPNVYGLRAWQEGLLEVQDEGSQLLGEALGARAGEAV 228 Query: 246 LDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD CA GGKT A + +V A+D RL +LR + Sbjct: 229 LDACAGAGGKTLLLAAAVGPSGRVHAVDPDAERLVRLRTRAIAAGAARIVAVHG--AAAP 286 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + D LVDAPCS G +RR PD+ W + Q ++L + + V+PGG +V Sbjct: 287 AELRVDRALVDAPCSELGALRRGPDLRWRLEPAAFEGLPALQARILERAAAHVRPGGRLV 346 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ C+ + + E+V + + P V + P A L+ +G++R P Sbjct: 347 YATCTFRRAEDEDVAEAFETAHPEFVRVAPDAP--------ASTLTKDGFLRTWPH---- 394 Query: 423 IDGVSSGMDGFFAVALRR 440 G D FFA A R Sbjct: 395 ----RDGTDAFFAAAWVR 408 >gi|188582359|ref|YP_001925804.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001] gi|179345857|gb|ACB81269.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001] Length = 367 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 17/239 (7%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267 ++ P F EG + +QD + I L G +++DLCA GGK A + + A++ Sbjct: 137 ALHVDPLFLEGGFEIQDEGSQIASLLAGARPGETIVDLCAGGGGKSLALAAITGNAARLI 196 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTI 322 A D RRL + L R E D VLVDAPC+ TGT Sbjct: 197 ATDADPRRLAPIHERLRRSGAQVEVRTPRTGKARSDVLADLDGTVDRVLVDAPCTGTGTW 256 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 RR+PD W + Q ++L + ++PGG +V+ CSL ++++ V +L+ Sbjct: 257 RRNPDAKWRLRPGSLSGRIAEQAEVLDRAARLLRPGGTLVYVTCSLLPEENDAAVDGLLQ 316 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S + + A + + + G ++ +G DGF+ + R Sbjct: 317 RSGGTIGAAATDPAPVPGLSERVRRTARG---------IQMSPALTGTDGFYVATMTRK 366 >gi|251796177|ref|YP_003010908.1| Fmu (Sun) domain protein [Paenibacillus sp. JDR-2] gi|247543803|gb|ACT00822.1| Fmu (Sun) domain protein [Paenibacillus sp. JDR-2] Length = 464 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 115/315 (36%), Gaps = 44/315 (13%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---------DIETWAHKLNAVM 197 +PE + +++ G+E D+ L + + + Sbjct: 5 QLPEAYIRQMQALLGREEAERFLDSYSEARAYGLRFNPLKCRQPIGDNAAAALKQPFHLE 64 Query: 198 L--PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 E P G++++Q+ SA +L G ++LD AAPGGK Sbjct: 65 PVPWCNTGYYYEEAARPGKHPYHTAGLYYIQEPSAMSAAELLGAEPGETILDFAAAPGGK 124 Query: 256 TAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAV 310 T Q+ + + A ++ R + L N++RL + + + + FD + Sbjct: 125 TTQIAGSMNGEGLLIANEIHPARAKILSENVERLGIRNAVVTNAAPHELSRRFPAFFDRI 184 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 ++D+PCS G R+ D + + A ++L +KPGG++V+S C+ ++ Sbjct: 185 MLDSPCSGEGMFRKDEDAVAEWSEAHVTYCAERSSEILEHAAIMLKPGGVLVYSTCTFNR 244 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++E+ +++ + P E R+ P + Sbjct: 245 AENEDTIERFVAGHPSFQV--------------------EQIERLWPHQVRGE------- 277 Query: 431 DGFFAVALRRLIQPK 445 G F LR+ + + Sbjct: 278 -GHFVARLRKASESE 291 >gi|332203232|gb|EGJ17300.1| nop2p [Streptococcus pneumoniae GA47901] Length = 434 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 113/300 (37%), Gaps = 26/300 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ L Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAI-----TQTL 54 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-- 262 + P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 55 WGHYGKVSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLA 114 Query: 263 -GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + ++S +R + L N++R + D K FD +++DAPCS Sbjct: 115 GEGLLISNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V Sbjct: 175 GMFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L + V + ID+ R+ P + F L+ Sbjct: 235 LLEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|225860818|ref|YP_002742327.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298229571|ref|ZP_06963252.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255457|ref|ZP_06979043.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502647|ref|YP_003724587.1| tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|225727354|gb|ACO23205.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae Taiwan19F-14] gi|298238242|gb|ADI69373.1| tRNA/rRNA methyltransferase [Streptococcus pneumoniae TCH8431/19A] Length = 434 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MKFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCVSLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|308810697|ref|XP_003082657.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri] gi|116061126|emb|CAL56514.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri] Length = 734 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 110/327 (33%), Gaps = 66/327 (20%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + P L + A + + + + + G Q+A Sbjct: 119 ENHEIPPPKPLAWYPER--LAWQCSYTRTQLRSKPILQGIFDFIKTAN-EIGSISRQEAV 175 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------------KVTALDVSKRRLE 277 + IP + VLD+CA+PG KT Q++ V A DV +R Sbjct: 176 SMIPPFFLDVQPHHRVLDMCASPGSKTFQILERMHGDFEGNAKLPTGFVVANDVDLKRCN 235 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 L R + + +A +Y FDA+L D PC+ T+R+ PD+ Sbjct: 236 LLTHQTKRANSPTLLVTNHEAQNYPVIKGPKGEVFDFDAILCDVPCTGDATMRKSPDIWT 295 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + Q K+ ++G VK GG +V+S CSL+ ++E VV +L+ +EL Sbjct: 296 RWTPGNGNGLHSLQLKIAMRGAQLVKVGGRLVYSTCSLNPIENEAVVAALLKECKGALEL 355 Query: 391 VPLNSAYWK------------------------------------SIDMAMALSPEGWIR 414 + ++ S + L E +R Sbjct: 356 LDVSKELPDLKRSPGIHDWQVWDKFGYHPSFDGGEEMYKLSRTMFSDEETKKLPLERCLR 415 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P + GFF +++ Sbjct: 416 LLPHHQD--------TGGFFVAVFQKV 434 >gi|310815768|ref|YP_003963732.1| NOL1/NOP2/sun family protein [Ketogulonicigenium vulgare Y25] gi|308754503|gb|ADO42432.1| NOL1/NOP2/sun family protein [Ketogulonicigenium vulgare Y25] Length = 390 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 68/399 (17%), Positives = 124/399 (31%), Gaps = 44/399 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 L ++ L + + D+ VR V LR + + Sbjct: 14 LDQIIA-GEPAERALISWARANRYAG--SGDRAAVRDRVFDALRRRDEYAHLGHALSGRG 70 Query: 75 LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 L + LR + +E A ++ Sbjct: 71 L------MIGALRAAA---------------EDLEAI-----FSGAAYAPPALTEAERAA 104 Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAH 191 L +P ++ A + L V E Sbjct: 105 PAPLPDDGPARWNLPAPLIAAF-RASLGDQADRAMAALSQRADVHLRVNTRKGGREKAQA 163 Query: 192 KLNAVMLPTGGIR-------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A + T + + + + + +G+ +QDA++ + + + Sbjct: 164 ALAAEEIETRPHNSVETALIVTKNARKVQNAQAYLQGLVELQDAASQAAILRLPLSDGMR 223 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTA-LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 VLD CA GGK+ + A D + R+ L R L I D P Sbjct: 224 VLDYCAGGGGKSLAMGARARLDIAAHDAAPARMADLPARAARAGLKIRQIGPADVARSGP 283 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 +D VL+DAPCS +GT RR PD W + D+ Q ++L + V GG++ + Sbjct: 284 ---YDLVLIDAPCSGSGTWRRTPDAKWRFEDKDLQALVRVQSEILPKAARLVTAGGVLAY 340 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 + CS+ + ++++ + + P + + D Sbjct: 341 ATCSVLQGENDDQIAAFCAAHPQWQQTDRMQLLPGPDWD 379 >gi|289449902|ref|YP_003475108.1| putative ribosomal RNA small subunit methyltransferase F [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184449|gb|ADC90874.1| putative ribosomal RNA small subunit methyltransferase F [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 573 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 21/240 (8%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 + +G +++Q+ASA +P L ++VLDLCAAPGGKT + + + + A Sbjct: 84 AQTVEYLQGYFYLQEASAMLPAALLQAKPGMAVLDLCAAPGGKTTKLAADMNNQGLLLAN 143 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +++ R + L NL++ + D F+ P +FD +L D PCS G R P Sbjct: 144 EINLERAKVLLRNLEQWGAKNVVLTNADAAQFNRDPGFIFDKILADVPCSGEGMFGRDPG 203 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + Q +LL+ + P G +++S C+ + +++E ++ + LR P Sbjct: 204 AVAAWTQYQGRSLTDLQLNILLKAADLLAPKGEILYSTCTFNPEENEGIIWRFLREKP-E 262 Query: 388 VELVPLNSAYWK-------SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L PL K ++ +R+ P + G F L + Sbjct: 263 FSLAPLRDRLPKPCPELSGGVNYNSDQPWANCLRVWPHLARGE--------GHFCALLVK 314 >gi|240103559|ref|YP_002959868.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] gi|239911113|gb|ACS34004.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus gammatolerans EJ3] Length = 312 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 19/256 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK- 255 +P +++ +P G+ + Q+AS+ IP + VLD+ AAPG K Sbjct: 63 PIPWVREGFFIDVDNLAKVPEHGLGLIFGQEASSMIPPVVLEPRPGELVLDMAAAPGSKT 122 Query: 256 --TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312 AQ + + + A D ++ R L NL+R+ + + D + + FD VL+ Sbjct: 123 GQIAQYMENDGCIIANDPNRDRANVLIANLNRMGVLIARVTTRDGAKFARFENTFDRVLL 182 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCSS G IR+ L +VK Q++L+L G +KPGG++V+S C++D + Sbjct: 183 DAPCSSVGMIRKSWRFLREWREKAVVKYMNIQKRLILAGYKALKPGGVMVYSTCTIDPLE 242 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS----PEGWIRITPDMLEKIDGVSS 428 +EEVV +LR + +E + L + + + + +RI P+ + Sbjct: 243 NEEVVDYLLRKTDARLERIKLPVKTSEPVLEWEGKTYSDELKKALRIHPND--------N 294 Query: 429 GMDGFFAVALRRLIQP 444 + FF ++++P Sbjct: 295 DTEAFFIA---KIVKP 307 >gi|322376224|ref|ZP_08050717.1| NOL1/NOP2/sun family protein [Streptococcus sp. M334] gi|321282031|gb|EFX59038.1| NOL1/NOP2/sun family protein [Streptococcus sp. M334] Length = 434 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E + + G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEAPVSFSDPIPQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGTTNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+++ + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIIKWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280 >gi|3288668|dbj|BAA31226.1| Fmu [Vibrio alginolyticus] Length = 211 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 11/216 (5%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R ++++L V+ K SL+ L +A + + RD L++ I LR+LPR++ Sbjct: 1 MNVRAAAANVLYLVVDKGHSLSSALP-----AAQQTVRPRDHALLQEICYGALRYLPRLE 55 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + + ++ L K+ L+ V + Q+ ++ + +A V VE K K R L+ Sbjct: 56 MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMRIPAHAAVGETVEGTKELKGPR-LRGLI 114 Query: 125 NSILRRVSREKIELLQR----IAGISIIPEWFKERLENFYG-KERVLAISDACISPLYID 179 N++LR R + EL Q AG P W + L+ Y + + ++ +P+++ Sbjct: 115 NAVLRNYQRNQEELDQMAVSNNAGKYGHPSWLLKLLQEAYPQQWESIVEANNQKAPMWLR 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215 + + +L I Sbjct: 175 VNHQHHTRDEYLELLKNENIDSTPHRSNGRHKIGRT 210 >gi|150004504|ref|YP_001299248.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides vulgatus ATCC 8482] gi|149932928|gb|ABR39626.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides vulgatus ATCC 8482] Length = 475 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 127/302 (42%), Gaps = 19/302 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F+ R + G+E A+ A + + + V + W+ ++ + + Sbjct: 1 MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVAGEPVLWASAGV 58 Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260 S P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 59 YLSQRSTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHARSV 118 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D ++FD VL D PCS Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNAEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + TD++ QR++L +KPGG++++S C+ ++++ EE V Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEENVA 238 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + VP+ S + ++A P R P ++ GFF L Sbjct: 239 WIADELGAEKLKVPVASEWGIIGNLAGQDFP--VYRFLPHRVKGE--------GFFLAVL 288 Query: 439 RR 440 R+ Sbjct: 289 RK 290 >gi|239623800|ref|ZP_04666831.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521831|gb|EEQ61697.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 465 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 18/273 (6%) Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 P + V +++E N G E P + G++++Q+ SA P Sbjct: 46 EPSRLRAMVPWNLEPVPWTENG--FYYGSEAGTEGGPRPSKHPAYYCGLYYLQEPSAMTP 103 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 + VLDLCAAPGGK+ + + + + D+S R L NL+ + Sbjct: 104 AAMLPVKPGDRVLDLCAAPGGKSTELGARLKGRGMLVSNDISYSRARALLKNLELAGVPN 163 Query: 291 EDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + FD +LVDAPCS G RR D++ ++ A QR++L Sbjct: 164 ICVTSESPEKLAEAWPEFFDKILVDAPCSGEGMFRRDEDMVKDWASNGPSYYAPIQRQIL 223 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 Q + +KPGG++++S C+ + + E ++ VL P +EL L+ + + L Sbjct: 224 GQAVRMLKPGGMLLYSTCTFSRTEDEGNIEYVLEHYP-QMELCMLDLSAVPGAVDGIGL- 281 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G +R+ P L+ G F LR+ Sbjct: 282 -KGCLRLFPHRLKGE--------GHFLALLRKK 305 >gi|255011152|ref|ZP_05283278.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis 3_1_12] gi|313148962|ref|ZP_07811155.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis 3_1_12] gi|313137729|gb|EFR55089.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis 3_1_12] Length = 472 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E G E +S A + + + + Sbjct: 1 MKLPISFIESTRALMGDEEYQKLSVALEQEPPVSVRLNSKFTDSLSCSSISGCIPWAAGG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260 L + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTAPVKMLDLCAAPGGKSTHARS 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 LLPDGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPSDFSRIGSFFDVILADVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240 Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E +PL W + + R P + GFF Sbjct: 241 AWI--RQEFGAEPLPLTVPEEWNITGGLLVGADAPVYRFLPHKTQGE--------GFFLA 290 Query: 437 ALRR 440 LR+ Sbjct: 291 VLRK 294 >gi|306827278|ref|ZP_07460565.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes ATCC 10782] gi|304430425|gb|EFM33447.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes ATCC 10782] Length = 436 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKESRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|307705076|ref|ZP_07641957.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK597] gi|307621375|gb|EFO00431.1| NOL1/NOP2/sun family protein [Streptococcus mitis SK597] Length = 434 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E + + G Sbjct: 1 MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPVSFPDTIPQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAQGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHHFKGEGQ--------FVAHLQ 280 >gi|261252942|ref|ZP_05945515.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis CIP 102891] gi|260936333|gb|EEX92322.1| ribosomal RNA small subunit methyltransferase F [Vibrio orientalis CIP 102891] Length = 474 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 117/260 (45%), Gaps = 21/260 (8%) Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-- 246 +L V G + E + + G++++Q+AS+ +PV Sbjct: 61 WQLEPVPWCEEGFWIEADESQVPLGNTAEHMSGLFYIQEASSMMPVAALFDNQGDDFTSV 120 Query: 247 -DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301 D+ AAPG KT Q + + + A + S R++ L N++R + + D + Sbjct: 121 LDMAAAPGSKTTQIAAKMENAGVLVANEFSASRVKVLHANIERCGVRNTALSNYDGRVFG 180 Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + F+AVL+DAPCS GT+R+ D + + + ++ A Q+ L+ +KP G+ Sbjct: 181 GWLPEQFNAVLIDAPCSGEGTVRKDADAMKNWNKESVLSIAETQKDLIESAFHALKPNGV 240 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +++++V + + VE L + +L+ EG++ I P + Sbjct: 241 MVYSTCTLSVEENQQVCLHLKETFGDLVEFESLADLF---TGAEKSLTEEGFLHIFPQVY 297 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GFF +R+ Sbjct: 298 DCE--------GFFVAKIRK 309 >gi|172087696|ref|YP_204657.3| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio fischeri ES114] gi|59479982|gb|AAW85769.1| predicted methyltransferase [Vibrio fischeri ES114] Length = 455 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 117/264 (44%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241 L V G + + S G++++Q+AS+ +PV + Sbjct: 39 AEKQWDLEPVPWCDTGFWITRPESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDD 98 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 LD+ +APG KT Q + + + A + S R++ L N+ R + + D Sbjct: 99 IEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNIQRCGVSNVALTHFDG 158 Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD++L+DAPCS GTIR+ PD + + +++ QR L+ +K Sbjct: 159 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALK 218 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG++V+S C+L+ ++++ + ++ V PL + + AL+ EG++ I Sbjct: 219 LGGVMVYSTCTLNHEENQNICHHLVEQFGDAVTFEPLGDLFESA---EKALTKEGFLHIY 275 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF +R+ Sbjct: 276 PQIFDSE--------GFFVAKIRK 291 >gi|168486097|ref|ZP_02710605.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1087-00] gi|183570809|gb|EDT91337.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae CDC1087-00] Length = 434 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|149019358|ref|ZP_01834720.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP23-BS72] gi|147931228|gb|EDK82207.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP23-BS72] Length = 434 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|148989524|ref|ZP_01820883.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP6-BS73] gi|149007328|ref|ZP_01830986.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP18-BS74] gi|307127029|ref|YP_003879060.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 670-6B] gi|147761132|gb|EDK68100.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP18-BS74] gi|147925067|gb|EDK76148.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae SP6-BS73] gi|306484091|gb|ADM90960.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae 670-6B] gi|332074725|gb|EGI85199.1| nop2p [Streptococcus pneumoniae GA17545] Length = 434 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|15901256|ref|NP_345860.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae TIGR4] gi|111658595|ref|ZP_01409252.1| hypothetical protein SpneT_02000270 [Streptococcus pneumoniae TIGR4] gi|14972890|gb|AAK75500.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae TIGR4] Length = 434 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|297491229|ref|XP_002698734.1| PREDICTED: NOL1/NOP2/Sun domain family, member 5-like [Bos taurus] gi|296472402|gb|DAA14517.1| NOL1/NOP2/Sun domain family, member 5-like [Bos taurus] Length = 368 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 23/251 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L V+D CAAPG KT+ L Sbjct: 96 VFPAQTDLHDHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLK 155 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCS 317 + K+ A D +RL + L R + ++ E D P +L+D CS Sbjct: 156 NQGKIFAFDQDAKRLASMATLLARAGVSCCELAEQDFLAVSPSDQRYCQVQYILLDPSCS 215 Query: 318 STGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R + + + + A FQ++ L ++F ++ +V+S CS+ ++++ Sbjct: 216 GSGMPSRQLEEPKSCTPSPERLRALAAFQQRALSHALTFPALR---RLVYSTCSVCQEEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+VV+ L+ SP L P+ + W ++ E +R +P+ GF Sbjct: 273 EDVVRAALQQSPGAFRLAPVLPS-WPHRGLSAFPGAEHCLRASPETTL--------TGGF 323 Query: 434 FAVALRRLIQP 444 F L R+ +P Sbjct: 324 FIAVLERVEEP 334 >gi|19746175|ref|NP_607311.1| nucleolar protein [Streptococcus pyogenes MGAS8232] gi|50914292|ref|YP_060264.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10394] gi|19748355|gb|AAL97810.1| putative nucleolar protein [Streptococcus pyogenes MGAS8232] gi|50903366|gb|AAT87081.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10394] Length = 436 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGAKNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|169833895|ref|YP_001694837.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae Hungary19A-6] gi|168996397|gb|ACA37009.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae Hungary19A-6] Length = 434 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAYLQ 280 >gi|157150359|ref|YP_001450343.1| NOL1/NOP2/sun family protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075153|gb|ABV09836.1| NOL1/NOP2/sun family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 434 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 20/240 (8%) Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + G+ + Q+ +A + Q+ + VLDL AAPGGK+ + Sbjct: 55 WGHYGKVSGKSSEHVTGLIYSQEPAAQMVAQVAHPHEGMKVLDLAAAPGGKSTHLLSYLN 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + + +++ +R + L N++R + + FD +++DAPCS Sbjct: 115 NTGLLVSNEINNKRSKILVENIERFGARNVLVTNESAERLAKVFSSFFDLIVLDAPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A QR++L + + GG +V+S C+ +++EE+V Sbjct: 175 GMFRKQPDAMDYWSLDYPAQCAALQREILEDAVKMLANGGELVYSTCTWAPEENEEIVAW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L P+ + +P + ID R+ P + F R Sbjct: 235 LLDEFPLELVDIPKLNGMTSGIDYPETA------RMYPHHFKGEGQ--------FVAKFR 280 >gi|312866111|ref|ZP_07726332.1| NOL1/NOP2/sun family protein [Streptococcus downei F0415] gi|311098515|gb|EFQ56738.1| NOL1/NOP2/sun family protein [Streptococcus downei F0415] Length = 438 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 118/306 (38%), Gaps = 26/306 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F E+ ++ G E ++ V K L Sbjct: 1 MTLPKEFIEKYQDLLGDEAADFLASFQQEA------VSAFRTNPLKKAQKSFPQPIPNSL 54 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + G+ + Q+ +A + Q+ + VLDL AAPGGKT + Sbjct: 55 WGHYGKVSGKSIEHVTGLVYSQEPAAQMVAQVAAPQKGMRVLDLAAAPGGKTTHLLSYMD 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSST 319 + + + ++SK+R + L N++R + K FD +++DAPCS Sbjct: 115 NTGILISNEISKKRSKILVENVERFGASNVVVTNESPQGLAKVFKNYFDLIVLDAPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD D + A Q+++L + ++ + PGG +V+S C+ +++E VV Sbjct: 175 GMFRKDPDACQYWSGDYPDQCARLQKEILTEAMTMLAPGGRLVYSTCTWSPEENEAVVTW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L + P +EL+P+ + M R+ P + F + Sbjct: 235 LLETYP-DLELLPVEKLNGMVGGIGMPQVA----RMYPHRFKGEGQ--------FLAHFQ 281 Query: 440 -RLIQP 444 R P Sbjct: 282 DRRPTP 287 >gi|15675206|ref|NP_269380.1| putative nucleolar protein [Streptococcus pyogenes M1 GAS] gi|28895994|ref|NP_802344.1| nucleolar protein [Streptococcus pyogenes SSI-1] gi|71910769|ref|YP_282319.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS5005] gi|13622373|gb|AAK34101.1| putative nucleolar protein [Streptococcus pyogenes M1 GAS] gi|28811244|dbj|BAC64177.1| putative nucleolar protein [Streptococcus pyogenes SSI-1] gi|71853551|gb|AAZ51574.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS5005] Length = 436 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|118100006|ref|XP_415710.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 [Gallus gallus] Length = 465 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 82/448 (18%), Positives = 158/448 (35%), Gaps = 38/448 (8%) Query: 5 MNARLVSSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 M ++ +LS + R L + ++ + + A+V TLR+ P + Sbjct: 1 MALYSAAAAVLSGLERGEGGLKNLVYGSDFPHARQ----------LYALVAETLRYGPVL 50 Query: 64 DAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE---NRH 119 +A+LD L+ + L ++L V +L+ A+R + Sbjct: 51 EALLDGAALLRVEKKLPPPLAKVL---VYDLLFGK--GLKCGGRWKALARRHRARLEAEL 105 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 V + R +P + + + + V Sbjct: 106 ARLKVRRGVSRNEDLLELASGAGPEAPQVPRYVRVNVLKTSVDDVVEFFKR-HGYSFLGR 164 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +++T + K + L + + + G +QD ++ +P L Sbjct: 165 ANSVEELKTLSGKKFMLDLHLPELLVFPPQTDFHDSRLYTSGHIILQDKASCLPAFLLSP 224 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 V+D CAAPG KT+ ++ + + A DV +RL + L R + + + + Sbjct: 225 SAGSHVIDACAAPGNKTSHLAAILKNKGHIFAFDVDTKRLATMNTMLMRAGVTSFKLAQQ 284 Query: 297 DA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D +L+D CS +G + R P + + + FQR++L + Sbjct: 285 DFLTVDPHDPKYSKVKYILLDPSCSGSGMVARLPLDEAAPSAERLQALSGFQRRILSHAL 344 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 F +V+S CS+ ++++E+VV VL+ L + + W +A E Sbjct: 345 RFPAVQ-RLVYSTCSVHQEENEDVVHAVLQEQGSAFRLANVFPS-WPCRGLATFPGAECC 402 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R +P GFF L R Sbjct: 403 LRASPADTL--------TQGFFVAVLER 422 >gi|21910418|ref|NP_664686.1| putative nucleolar protein [Streptococcus pyogenes MGAS315] gi|21904616|gb|AAM79489.1| putative nucleolar protein [Streptococcus pyogenes MGAS315] Length = 435 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 105/289 (36%), Gaps = 24/289 (8%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV-SL 215 + + + + L + Sbjct: 11 YQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNTLWGYYGKLSGKS 65 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272 P G+ + Q+ +A + Q+ VLDL AAPGGK+ + + + + ++S Sbjct: 66 PEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYLDNTGLLVSNEIS 125 Query: 273 KRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 K+R + L N++R + D FD ++ D PCS G R+ PD + Sbjct: 126 KKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSGEGMFRKDPDAIQ 185 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ +L + +EL Sbjct: 186 YWHHGYPAECAKLQKSILEDALAMLKPGGELIYSTCTWAPEENEDVVQWLLETY-TFLEL 244 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 V + + + + R+ P + F L+ Sbjct: 245 VDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKLK 281 >gi|146325710|sp|Q5E5C7|RSMF_VIBF1 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 473 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 117/264 (44%), Gaps = 21/264 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLF--GTLN 241 L V G + + S G++++Q+AS+ +PV + Sbjct: 57 AEKQWDLEPVPWCDTGFWITRPESDTVKLGSTAEHMAGLFYIQEASSMMPVTALLKDNDD 116 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 LD+ +APG KT Q + + + A + S R++ L N+ R + + D Sbjct: 117 IEMALDMASAPGSKTTQLAAGMKNQGALVANEFSSSRVKVLCSNIQRCGVSNVALTHFDG 176 Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD++L+DAPCS GTIR+ PD + + +++ QR L+ +K Sbjct: 177 RVFGGWLPETFDSILLDAPCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIESAFHALK 236 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG++V+S C+L+ ++++ + ++ V PL + + AL+ EG++ I Sbjct: 237 LGGVMVYSTCTLNHEENQNICHHLVEQFGDAVTFEPLGDLFESA---EKALTKEGFLHIY 293 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + GFF +R+ Sbjct: 294 PQIFDSE--------GFFVAKIRK 309 >gi|167747172|ref|ZP_02419299.1| hypothetical protein ANACAC_01886 [Anaerostipes caccae DSM 14662] gi|167654132|gb|EDR98261.1| hypothetical protein ANACAC_01886 [Anaerostipes caccae DSM 14662] Length = 453 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 19/257 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 T E P + G++++Q+ SA P VLDLCAAPGGK+ Sbjct: 58 PWTKNGFFVGPKEQPAKHPFYHAGLYYIQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKST 117 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLV 312 + + + + D+S R + L NL+ + I+ + + P + FD VLV Sbjct: 118 ELGAKLRGEGILVSNDISITRTKALLKNLEMFGISNSVIVSEEPKNLVPVFYEYFDKVLV 177 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + I QR+++L + +KPGG +++S C+ ++ Sbjct: 178 DAPCSGEGMFRKGSSEIKNWAEYGIEPYVKIQREIILDAVKMLKPGGYLLYSTCTFSPEE 237 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEKIDGVS 427 E++++ +L P + L L A + IR+ P ++ Sbjct: 238 DEQLIEYLLEQEPG-LSLADLPDCEGFDRGHAEWTVSGLQDVKKCIRLWPHRIKGE---- 292 Query: 428 SGMDGFFAVALRRLIQP 444 G F L++ P Sbjct: 293 ----GHFLALLKKDGSP 305 >gi|330038980|ref|XP_003239753.1| nucleolar protein [Cryptomonas paramecium] gi|327206678|gb|AEA38855.1| nucleolar protein [Cryptomonas paramecium] Length = 348 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 19/241 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTA 268 I ++P + G++ +Q S+ V N +LDL AAPG K +Q++ + V A Sbjct: 114 ICAIPEYLAGLYTIQSISSFFSVICMNIKKNEKILDLAAAPGSKTTLISQVMNNTGIVVA 173 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHPD 327 D++ R++ L N+ RL + II + FD VL+DAPC+ TG + Sbjct: 174 NDINFLRIKSLIGNIHRLGVKNTVIINYNGILLNKYIKGFDKVLIDAPCTGTGILSHDNT 233 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ I+ Q+KLLL I GG V++S CS+ +++E V++ L Sbjct: 234 IKISKIKSKIMTITRLQKKLLLSAIDMCNQKSINGGTVLYSTCSILVEENECVIEYALNK 293 Query: 384 SPIPVELVPLNSAYWKSIDM---AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L ++ + +R P + DGFF L++ Sbjct: 294 KRVEILATHLGCGMPGYVNFDKNRFNKNMNKCVRFFPHI--------HNTDGFFICKLKK 345 Query: 441 L 441 L Sbjct: 346 L 346 >gi|309806256|ref|ZP_07700269.1| NusB family protein [Lactobacillus iners LactinV 03V1-b] gi|308167240|gb|EFO69406.1| NusB family protein [Lactobacillus iners LactinV 03V1-b] Length = 284 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 23/290 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL+ + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLSTEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKR 274 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ ++ Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQK 283 >gi|291450278|ref|ZP_06589668.1| RNA-binding Sun protein [Streptomyces albus J1074] gi|291353227|gb|EFE80129.1| RNA-binding Sun protein [Streptomyces albus J1074] Length = 338 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 86/276 (31%), Gaps = 30/276 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVTLRFLPR 62 R+++ L V + +L + RD L +V TLR Sbjct: 23 PVRILAFEALRAVDERDAYANLVLPALLRKAREDHPDTFEARDAALATELVYGTLRRQGT 82 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 DA++ + L + +L + Q+L + +A V VE A+ + AK Sbjct: 83 YDAIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPSHAAVSATVELARVVLGD-GRAK 141 Query: 123 LVNSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKERV--LA 167 VN++LRR++ + ++ +A + P W L + G R Sbjct: 142 FVNAVLRRITADDLDGWLERVAPPYDEDPEDHLAVVHSHPRWVVSALWDSLGGPRAGIED 201 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAE 220 + +A + L + L+ + ++ E Sbjct: 202 LLEADNERPEVTLVARPGRTNSDTLLDGLGPDRALPGRWSPYAVRLTEGGEPGAIDAVRE 261 Query: 221 GVWWVQDASASIPVQLFGTLNNL----SVLDLCAAP 252 G VQD + + LD CA P Sbjct: 262 GDAGVQDEGSQLVALALAAAPLEGSDSRWLDACAGP 297 >gi|71903594|ref|YP_280397.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS6180] gi|71802689|gb|AAX72042.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes MGAS6180] Length = 436 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|139473685|ref|YP_001128401.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes str. Manfredo] gi|134271932|emb|CAM30170.1| NOL1/NOP2/sun family protein [Streptococcus pyogenes str. Manfredo] Length = 436 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|146302792|ref|YP_001190108.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera sedula DSM 5348] gi|145701042|gb|ABP94184.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera sedula DSM 5348] Length = 336 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 28/339 (8%) Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 + L N+ + ++RIA ++ ER + E +C PL + Sbjct: 6 SYLKNNDSLLYTYRITPDIKRIAEKYGFLDYMVERYLE-FLGEGTEDFLSSCSVPLTKSI 64 Query: 181 TVK---FDIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQDA 228 D +L I + +P + +G +++Q Sbjct: 65 RCNSLKIDCGKLEKRLTDKGFSLKRIEWSRFGYRVEKVPPRPTLGATVEYMKGFYYIQGE 124 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDR 285 ++ IP ++ VLD+ ++PGGKT + + + + AL+ + RL K+R N+ R Sbjct: 125 ASMIPPEVLSPKEGELVLDMASSPGGKTTHMAQLMNNRGTIVALEKNPARLRKIRSNISR 184 Query: 286 LHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 L + + FD +L+DAPCS G I P +D+ Q Sbjct: 185 LGVSNVVLLWMGGEDVPKLGIEFDKILLDAPCSGEGLIPLDPSRKTKTKPEDLKNFQRTQ 244 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNSAYWKSI 401 LL G +K GG +V+S CS+ ++ E +V L ++ +P Sbjct: 245 LTLLASGFKVLKRGGYMVYSTCSIAPEEDEVIVDFAVKYLGMRVEKIQGIPGERGLTSFK 304 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + +RI P + M+GFF LR+ Sbjct: 305 GLSFSPELTQCLRIYPHLQ--------HMEGFFVCLLRK 335 >gi|227890992|ref|ZP_04008797.1| 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867401|gb|EEJ74822.1| 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 456 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 118/303 (38%), Gaps = 20/303 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F E+ + G + A + I + + + + Sbjct: 1 MDLPKEFIEKYQKLLG-DEAEAFLASLDEKSVIGFRLNPLKRHYKDVDYDLTASVPFAQD 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 + + G + QD SA + VLDLCAAPGGK+ Q + + Sbjct: 60 GFIGKVSGRSLEHQAGYVYSQDLSAMYVAAVANAQPGDKVLDLCAAPGGKSTQLAEQLNN 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R+ I D K FD ++VDAPCS G Sbjct: 120 QGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLAKVFKGYFDKIVVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ + D + A Q+ +L + + +K GG +V+S C+ ++ E++V + Sbjct: 180 MFRKDHSAVKYWHKDYPAECARRQKLILEEAMKMLKTGGELVYSTCTFAPEEDEQIVAWL 239 Query: 381 LRSSPIPVELV----PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 L + + +E + ++S + D L+ IR+ P E F Sbjct: 240 LENYDLTLEPITKYDGMDSGRPEFADGNEDLTK--TIRLMPHHFEGEGQ--------FLA 289 Query: 437 ALR 439 L+ Sbjct: 290 KLK 292 >gi|309804769|ref|ZP_07698833.1| NusB family protein [Lactobacillus iners LactinV 09V1-c] gi|308165879|gb|EFO68098.1| NusB family protein [Lactobacillus iners LactinV 09V1-c] Length = 284 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 23/290 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +NAR V+ L + +++ L+ S LS D+ L IV T+++ Sbjct: 1 MK--INARSVALDTLLKIFKQKSYSNIALNNALEKSQ---LSPIDKALTTQIVYGTVQYK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD-KENR 118 ++ L ++ + L L LL +S Q +LD + ++VD A + AK + Sbjct: 56 LYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSYSPKGS 113 Query: 119 HFAKLVNSILRR------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +LVN ILR + E+ + ++ ++ P+W + + +GK + ++I A Sbjct: 114 QSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSYPQWLVKYCLDHFGKAKTISILQAG 173 Query: 173 ISPLY--IDLTVKFDIETWAHKLNAVMLPT----GGIRLKELPESIVSLPGFAEGVWWVQ 226 P I + + HKL + + SI + F +G+ +Q Sbjct: 174 NMPSVNSIRIADMSKKDEILHKLATEYKISISNLTNHNVNLDHGSITNSQLFKDGLITIQ 233 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKR 274 D++AS+ V F + VLD C+APGGKTAQ+ KV ALD+ ++ Sbjct: 234 DSAASLVVDAFNFKGDEKVLDACSAPGGKTAQIAEYLTTGKVFALDIHQK 283 >gi|68073669|ref|XP_678749.1| sun-family protein [Plasmodium berghei strain ANKA] gi|56499314|emb|CAH96968.1| sun-family protein, putative [Plasmodium berghei] Length = 376 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 138/432 (31%), Gaps = 89/432 (20%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 L + L + + + RD+ + V ++ + + Sbjct: 20 SPLDIYMRLYFKSN---NIKNRDKPYISEHVYNIIKNKTLLAYM---------------- 60 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 + V L K + + +N+ Sbjct: 61 ------------------SSPVSLYTNIIKTYFSSDKWKYEMNNE-----------KIPA 91 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLP 199 P+ ++L N YG+++ + + I L V + L + + Sbjct: 92 HVRYSFPKELYDQLVNCYGEKKSITLMSILNEKAPIFLRVNTNKISRNDLYKNLMSKGIS 151 Query: 200 TGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 L + + ++ + +G + +QD ++ I VLD CA G Sbjct: 152 VEKCVNSPSGLLLTKNQILKNIHEYKKGYFEIQDEASQIVSSKIPVNPGDKVLDYCAGSG 211 Query: 254 GK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 GK + + + K+ D+ R L + + L R + ++ + D Sbjct: 212 GKTLAFSGSMENTGKIYLHDIRDRMLSQAKIRLRRAGIQNYILLNSNHILLKKLFGYMDI 271 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 V+VDAPC+ TG +RR+P++ + + + + QRK+ + + ++K G +V+ CS+ Sbjct: 272 VVVDAPCTGTGALRRNPEMKYKFTNEKLYEYMNLQRKIFEKALFYLKKNGKIVYITCSIL 331 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ + + + + P +S S Sbjct: 332 DAENVHQAKYFCQKHNLYLSEPPFHS----------------------------LPQSKS 363 Query: 430 MDGFFAVALRRL 441 MDGFF R Sbjct: 364 MDGFFLAIFERK 375 >gi|212693591|ref|ZP_03301719.1| hypothetical protein BACDOR_03108 [Bacteroides dorei DSM 17855] gi|237724191|ref|ZP_04554672.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D4] gi|212663844|gb|EEB24418.1| hypothetical protein BACDOR_03108 [Bacteroides dorei DSM 17855] gi|229437379|gb|EEO47456.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides dorei 5_1_36/D4] Length = 475 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 128/302 (42%), Gaps = 19/302 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F+ R + G+E A+ A + + + V + W+ ++ + + Sbjct: 1 MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVTGEPVLWASAGV 58 Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260 P F G ++VQ+AS+ Q + +LDLCAAPGGK+ + Sbjct: 59 YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHVRSV 118 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D ++FD VL D PCS Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNVEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + TD++ QR++L +KPGG++++S C+ ++++ E+ V Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEKNVA 238 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + VP+ S + ++A P R P ++ GFF L Sbjct: 239 WIADELGAEILKVPVVSEWGIIGNLAGQNFP--VYRFLPHRVKGE--------GFFLAVL 288 Query: 439 RR 440 R+ Sbjct: 289 RK 290 >gi|323484804|ref|ZP_08090161.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163] gi|323401910|gb|EGA94251.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163] Length = 468 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 127/304 (41%), Gaps = 25/304 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN---AVMLPTG 201 +P + E+++ KE P + L V E +A + + G Sbjct: 6 LPSDYLEKMKKL-LKEEFEDYLTCFSEPPHYGLRVNRLKCTPEQFAAECGWKLTQIPWAG 64 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258 + P + G++++Q+ SA P L VLDLCAAPGGK+ + Sbjct: 65 DGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGDKVLDLCAAPGGKSTELAA 124 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPC 316 + + + D+S R + L NL+ + + + FD +LVDAPC Sbjct: 125 KLQGEGLLFSNDISNSRAKALLKNLELAGAGNICVSSETPEKLARYFEGFFDKILVDAPC 184 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G RR D++ + + Q +++ + + ++PGG++++S C+ D++++E Sbjct: 185 SGEGMFRRDGDMVKSYSQKGPEYYSRIQYEIVSEAVKMLRPGGMMLYSTCTFDEEENEGT 244 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 ++++L+ + LVPL + ++ +R+ P + G F Sbjct: 245 IRRLLKEH-DDLHLVPLEKQDGFQPGIGLSE----CVRLFPHKIRGE--------GHFIA 291 Query: 437 ALRR 440 L++ Sbjct: 292 LLKK 295 >gi|308234576|ref|ZP_07665313.1| NusB/RsmB/TIM44 [Atopobium vaginae DSM 15829] gi|328944365|ref|ZP_08241828.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829] gi|327491080|gb|EGF22856.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829] Length = 537 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 76/446 (17%), Positives = 143/446 (32%), Gaps = 76/446 (17%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R V+ L + + L AF L Q ++ V+ +V + +D + Sbjct: 9 SRTVAFKALCALRKNTTYAQDFLKHF---DAFCALLQDEKSFVQHVVCGVISSQSMVDKI 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + + Y + LR++ +++Y A YAVV VE + ++ A VN+ Sbjct: 66 LAQYVKR-FAHQPYKVLICLRMATYELVYRQTAAYAVVSQYVELVRLV--DKRGASFVNA 122 Query: 127 ILRRV--------------------------------------------------SREKI 136 +L R+ + Sbjct: 123 VLHRIAAYDQANFARARQHLVRIIQDCHSYDDILRIINAAPISVESQHHLLQSFGFMCES 182 Query: 137 ELLQRIAGISIIPEWFKER-LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 + L +S +P W +R + A + ++ L Sbjct: 183 DFLCEACLVSGLPTWIVKRVYHDRGLFICAHMALAAQAHVPFYVCKNPYNPPQIPDTLVP 242 Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 V G L+ + +++ + D +A +L++ G K Sbjct: 243 VQSAWGSYTLQGISPALLYND-IEGQRLTISDFAAQCIAACVVHTRPKKLLEIGCGKGTK 301 Query: 256 TAQLIVSGAKV--------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-----FDYC 302 + + ++ D S ++L R L R ++ + Sbjct: 302 SLLISYMNKRLSCPAISERVLCDKSSQKLACARKRLSRANITDPIRFVAHDATTLDTYFD 361 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD-----DIVKSACFQRKLLLQGISFVKP 357 + FD V +DAPCS +GT+RRH + T Q +LL V Sbjct: 362 AHERFDTVFIDAPCSGSGTMRRHVEAPTTMSEAALDVARPHSLVHTQSELLRAASCLVNV 421 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRS 383 GG ++++ CS+ ++E+VV L S Sbjct: 422 GGFLIYATCSIFSCENEDVVSAFLAS 447 >gi|218709402|ref|YP_002417023.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio splendidus LGP32] gi|254766870|sp|B7VNJ8|RSMF_VIBSL RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|218322421|emb|CAV18574.1| NOL1/NOP2/sun family protein [Vibrio splendidus LGP32] Length = 473 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 120/265 (45%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242 + +L V G + E + + G++++Q+AS+ +P + Sbjct: 57 KEKGWELEPVPWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 QAVLDTAAAPGSKTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GTIR+ D + +V A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G++V+S C+L +++++V + + VE L S + + + EG++ I P Sbjct: 237 NGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLESLF---DNAKATTTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDSE--------GFFVARIRKLA 310 >gi|237708750|ref|ZP_04539231.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 9_1_42FAA] gi|265755983|ref|ZP_06090450.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_33FAA] gi|229457176|gb|EEO62897.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 9_1_42FAA] gi|263234061|gb|EEZ19662.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_1_33FAA] Length = 475 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 128/302 (42%), Gaps = 19/302 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F+ R + G+E A+ A + + + V + W+ ++ + + Sbjct: 1 MKLPSEFEARTLEWMGEETYRALEAALQTEPPVSIRV--NRTKWSGEVTGEPVLWASAGV 58 Query: 206 KELPES-IVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI-- 260 P F G ++VQ+AS+ Q + +LDLCAAPGGK+ + Sbjct: 59 YLSQRPTFTFDPLFHAGCYYVQEASSMFVEQVLRTYITGPVVMLDLCAAPGGKSTHVRSV 118 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D ++FD VL D PCS Sbjct: 119 LPVGSLLVANEVMRNRSQVLAENLIKWGNVEVVVTNNDPADFTSLTEVFDVVLADVPCSG 178 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + TD++ QR++L +KPGG++++S C+ ++++ E+ V Sbjct: 179 EGMFRKDPVAVEEWSTDNVQVCWQRQRRILADIWPALKPGGLLIYSTCTYNREEDEKNVA 238 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + VP+ S + ++A P R P ++ GFF L Sbjct: 239 WIADELGAEILKVPVVSEWGIIGNLAGQNFP--VYRFLPHRVKGE--------GFFLAVL 288 Query: 439 RR 440 R+ Sbjct: 289 RK 290 >gi|329929396|ref|ZP_08283144.1| NOL1/NOP2/sun family protein [Paenibacillus sp. HGF5] gi|328936483|gb|EGG32928.1| NOL1/NOP2/sun family protein [Paenibacillus sp. HGF5] Length = 462 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 33/248 (13%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + P A G++++Q+ SA V+L ++LDL AAPGGKT+ Sbjct: 64 PWCETGYYYDESVRPGKHPYHAAGLYYIQEPSAMSAVELLNPQPGETILDLAAAPGGKTS 123 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLV 312 ++ + + ++ R L N++R+ + + D FD +++ Sbjct: 124 HIASNMMGRGLLVSNEIHPERARILAENVERMGITNTVVTSAAPDQLSRRFVACFDRIML 183 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ + + + Q ++ + +KPGG + +S C+ + + Sbjct: 184 DAPCSGEGMFRKDAAAIAEWSPEHVDLCVARQWDIVQEAYRMLKPGGTLAYSTCTFNTAE 243 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +EE+++++L P L + R+ P + G Sbjct: 244 NEEMIERILSQYPD--------------------LELQQMKRLWPHLERGE--------G 275 Query: 433 FFAVALRR 440 F L + Sbjct: 276 HFVAILVK 283 >gi|8922322|ref|NP_060514.1| putative methyltransferase NSUN5 isoform 2 [Homo sapiens] gi|118573085|sp|Q96P11|NSUN5_HUMAN RecName: Full=Putative methyltransferase NSUN5; AltName: Full=NOL1-related protein; Short=NOL1R; AltName: Full=NOL1/NOP2/Sun domain family member 5; AltName: Full=Williams-Beuren syndrome chromosomal region 20A protein gi|7022196|dbj|BAA91515.1| unnamed protein product [Homo sapiens] gi|37674385|gb|AAQ96838.1| unknown [Homo sapiens] gi|119590098|gb|EAW69692.1| hCG39703, isoform CRA_a [Homo sapiens] Length = 429 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 82/410 (20%), Positives = 155/410 (37%), Gaps = 29/410 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 A W ++ E +R +P+ GFF + R+ P+ Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVPR 429 >gi|160892608|ref|ZP_02073398.1| hypothetical protein CLOL250_00138 [Clostridium sp. L2-50] gi|156865649|gb|EDO59080.1| hypothetical protein CLOL250_00138 [Clostridium sp. L2-50] Length = 460 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 128/312 (41%), Gaps = 25/312 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAVML 198 +PE F R++ G + A + ++ L V + + +L V Sbjct: 1 MNLPESFTNRIKTQLG-DEYEAYMNCLDQGMHHGLRVNTNKISVEDFLKISPFELKPVPW 59 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 T G + + P + G++++Q+ SA P + + VLD+CAAPGGK+ + Sbjct: 60 TTNGFYYDDKACTPSKHPYYYAGLYYIQEPSAMAPASILPVEDGDVVLDICAAPGGKSTE 119 Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVD 313 + + + D+S R + L NL+ + + + + FD +L+D Sbjct: 120 LAAKLHGTGFLISNDISNSRAKALLKNLELFGIGNMCVVSEAPNKLSTKFYQTFDKILID 179 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ ++ + + + A QR +L + + +KPGG +++S C+ +++ Sbjct: 180 APCSGEGMFRKSQSMVTAWENNGVELFAGLQRGILNEVVKMLKPGGTMLYSTCTFSPEEN 239 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSSG 429 E+ ++ +L + + + + A + E R+ P +E Sbjct: 240 EQSIEYLLSLDDTLELIEVPKYPGFCNGNPAWGKTENAELEKCARLWPHHIEGE------ 293 Query: 430 MDGFFAVALRRL 441 G F + + Sbjct: 294 --GHFVALIHKK 303 >gi|327270610|ref|XP_003220082.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like [Anolis carolinensis] Length = 775 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 77/359 (21%), Positives = 124/359 (34%), Gaps = 64/359 (17%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 + L+N Y KE + D + L + W L+ +L K Sbjct: 75 HAKEILHCLKNKYFKELENQMVDGQKIEMPQPLIWYPEELAWQTSLSRKVLRKSPELEKF 134 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------A 257 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 135 HHFLVSETE---CGNISRQEAVSMIPPLLLNVQPHHKILDMCAAPGSKTAQLIEMLHADM 191 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307 + V A DV +R L RL+ + + DA + Sbjct: 192 NVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPSILVANHDASSIPNLQITTNGKKEILFY 251 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CS Sbjct: 252 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 311 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI--------- 413 L+ ++E V+ +L S +EL ++S I ++ +G Sbjct: 312 LNPIENEAVIASLLEKSEGALELADVSSELPGLKRMPGITKWKVMTKDGQWFEDWKEVPS 371 Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 372 NRQTQIRPTMFPLKDEEKLKALNLERCLRILPHHQNTGGFFVAVLIKKSHMPWNKRQPK 430 >gi|72168871|ref|XP_787860.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115627173|ref|XP_001188217.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 73/430 (16%), Positives = 155/430 (36%), Gaps = 36/430 (8%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101 + ++ + A+V +L++ I+ ++D L + + + L V + L+ Sbjct: 36 NSKNIRQLYALVCESLKYATIIEEIIDNTA--FLQKVPWMERNLALVLLYDFLFGKKLAG 93 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 A + + K+ + + L ++ IP + + L Sbjct: 94 ACSGKYRKAVVKQKKELKAELQKMKEKKGATSLSDLLPSQVKDEVSIPRYIRVNLLKTSI 153 Query: 162 KERVLAISDACISPLYIDLTVKFDIET----------------WAHKLNAVMLPTGGIRL 205 + + A +A + + + + + A L + + Sbjct: 154 DDVIAAFIEAGYTCVMTRDEAEEEKQDATPKYISNLSVDVSRSLGQYEFATDLHLDDVLV 213 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 S P + +G + D ++ P + V+D C+APG KT+ + + Sbjct: 214 FAARTDFHSHPLYLQGHIILMDKASCFPAYVLSAKPGSHVIDACSAPGNKTSHMASLLRN 273 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD----AVLVDAPCSS 318 AK+ + D+ +R+ + L+R + A I D P + +VD CS Sbjct: 274 DAKIYSYDLDPKRISVMNTLLERAGVSAAKTIHQDFLTTDPCSKENMRVEYTIVDPSCSG 333 Query: 319 TGTIRRHPDVLWTRDTDDIVKS---ACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R ++ +D + Q ++L +SF V+ VV+S CS+ ++++ Sbjct: 334 SGMASRKDYLVDDDMQEDRARLRSLHQLQCRILTHALSFPSVR---RVVYSTCSVHREEN 390 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+VV+ VL LVP+ W ++ + E + + + +GF Sbjct: 391 EDVVRTVLEQ-SDGFRLVPVMQGTWDRRGLSTSQDGEEDH--IGECCVRASPHTDLTNGF 447 Query: 434 FAVALRRLIQ 443 F R + Sbjct: 448 FVALFERTGK 457 >gi|76802670|ref|YP_330765.1| rRNA methylase [Natronomonas pharaonis DSM 2160] gi|76558535|emb|CAI50127.1| probable rRNA methylase [Natronomonas pharaonis DSM 2160] Length = 303 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 12/260 (4%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + V G RL E S P F G + Q+ +++P VL Sbjct: 46 DEAGVDYEPVDWHDGLFRLGEGESPGNSWP-FVHGWVYGQEEVSAVPALALAPQPGERVL 104 Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--- 300 D CAAPG KT QL + + D + RL LR N +R + + DA + Sbjct: 105 DCCAAPGSKTTQLAALMDDRGLLVGNDNNLGRLSALRSNAERCGVTNIAVTRQDARNLSL 164 Query: 301 -YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + FD LVD PCS GT+R++PD + D I A Q+ +L + I + GG Sbjct: 165 KPFGGERFDRTLVDVPCSCEGTVRKNPDAVDGWSLDHIEGIAGVQKAILERAIEVTRDGG 224 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 VV+S C+ +++E V+Q L + L + + +R Sbjct: 225 TVVYSTCTFAPEENEAVLQHALDGGDCRLVDFDLPLESVPGVTDWEDERFDDAVR----K 280 Query: 420 LEKIDGVSSGMDGFFAVALR 439 ++I + GFF L Sbjct: 281 AQRIYPHHNDTGGFFCAKLE 300 >gi|164655415|ref|XP_001728837.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966] gi|159102723|gb|EDP41623.1| hypothetical protein MGL_4004 [Malassezia globosa CBS 7966] Length = 763 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 79/372 (21%), Positives = 141/372 (37%), Gaps = 46/372 (12%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 Q++++ + VV++ + + A ++ + + V E+ Sbjct: 344 QLVHMRI--QEVVNILSNLQTLSEPGKSRADYMDRLSKDVQTY-----------YGYNEF 390 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIE---TWAHKLNAVMLPTGGIRLKEL 208 + + +A +A P + + A KL + + Sbjct: 391 LTNMFLELFSPDEAIAFFEANEVPRPVTIRTNTLRTRRRDLAQKLINRGVSLEPVGPWSK 450 Query: 209 PE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL- 259 I + P + G + +Q S+ +P + +LD+ +APGGK L Sbjct: 451 VGLQVFESSVPIGATPEYLVGEYMLQAVSSFLPCMALAPQPHERILDMASAPGGKVTYLS 510 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPC 316 + + V A D +K R++ L N+ R+ + D + FD V++D+PC Sbjct: 511 ALMQNTGCVFANDSNKARIKSLTANIHRMGCRNVVVCNYDGRQFPKVIGGFDRVMLDSPC 570 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVFSNCSLDKQD 372 S TG I + V + D + + Q++L+L I V P GG VV+S CS+ ++ Sbjct: 571 SGTGVISKDASVKTNKTKRDFILLSQLQKQLILCAIDSVNPRSESGGYVVYSTCSVMVEE 630 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSI-----DMAMALSPEGWIRITPDMLEKIDGVS 427 +EEVV+ LR P V +VP + + RI P + Sbjct: 631 NEEVVEYALRKRPN-VRIVPTGIDFGRDGLKCFRGKKFDERMPFCRRIFPHV-------- 681 Query: 428 SGMDGFFAVALR 439 MDGFF L+ Sbjct: 682 HNMDGFFVCKLK 693 >gi|222479906|ref|YP_002566143.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC 49239] gi|222452808|gb|ACM57073.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC 49239] Length = 314 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 100/261 (38%), Gaps = 19/261 (7%) Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + + + + G Q+ + +P V D C Sbjct: 47 EEGVAYEPVDWHDGLFRLPDGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPGEHVWDAC 106 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK- 305 AAPG KT Q+ + V A D + RL LR N +RL + + DA ++ K Sbjct: 107 AAPGSKTTQIADAMNDEGTVVANDNNLGRLSALRHNAERLGITNAIVTNQDARNFSTKPL 166 Query: 306 ---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD LVDAPCS GT R++ DV+ D + A Q+ +L + + + GG VV Sbjct: 167 AFDEFDRALVDAPCSCEGTCRKNLDVVDQWTLDHVHAVAGIQKGILARAVQATRSGGTVV 226 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPD 418 +S C+ +++E V+ VL + L + + + + R+ P Sbjct: 227 YSTCTFAPEENEAVLDHVLGEEDCEIVAFDLPLDTVPGVTEWDGETYDESVTRAHRVYPH 286 Query: 419 MLEKIDGVSSGMDGFFAVALR 439 + GFF LR Sbjct: 287 H--------NDTGGFFCAKLR 299 >gi|257096821|sp|B8CPH7|RSMF_SHEPW RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 474 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 20/254 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAP 252 G + + + +G++++Q+AS+ +P + VLD+ +AP Sbjct: 65 WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAP 124 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307 G KT Q+ + + + A + S R++ L N+ R+ + + DA + F Sbjct: 125 GSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYMFEIF 184 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D+VL+DAPCS GTIR+ PD L D +D+ Q+ L+ +K GG +V+S C+ Sbjct: 185 DSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELVYSTCA 244 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L +Q+++ V + + P VE + L+S + + + EG++ + P + + Sbjct: 245 LSRQENQNVCDYLKQRYPDAVEFINLSSLFP---GADKSCTEEGFLHVWPQIYDSE---- 297 Query: 428 SGMDGFFAVALRRL 441 GFF ++++ Sbjct: 298 ----GFFVAKIKKV 307 >gi|212635616|ref|YP_002312140.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella piezotolerans WP3] gi|212557100|gb|ACJ29554.1| Nop2p [Shewanella piezotolerans WP3] Length = 547 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 20/254 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAP 252 G + + + +G++++Q+AS+ +P + VLD+ +AP Sbjct: 138 WCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAP 197 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307 G KT Q+ + + + A + S R++ L N+ R+ + + DA + F Sbjct: 198 GSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYMFEIF 257 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D+VL+DAPCS GTIR+ PD L D +D+ Q+ L+ +K GG +V+S C+ Sbjct: 258 DSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELVYSTCA 317 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L +Q+++ V + + P VE + L+S + + + EG++ + P + + Sbjct: 318 LSRQENQNVCDYLKQRYPDAVEFINLSSLFP---GADKSCTEEGFLHVWPQIYDSE---- 370 Query: 428 SGMDGFFAVALRRL 441 GFF ++++ Sbjct: 371 ----GFFVAKIKKV 380 >gi|170746537|ref|YP_001752797.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170653059|gb|ACB22114.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831] Length = 370 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 15/233 (6%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSK 273 F EG + +QD + + L +++DLCA GGKT A +GA++ A D Sbjct: 143 EFLEGWYEIQDEGSQLAALLAAPRAGETIVDLCAGGGGKTLALAAETGNGARLIATDGDP 202 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDV 328 RRL + L R AE D V+VDAPC+ +GT RR+PD Sbjct: 203 RRLAPIHERLRRSGAQAEVRTPRSGKARADVLADLDGKVDRVVVDAPCTGSGTWRRNPDA 262 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 W + Q ++L + V+PGG +V+ CSL +++ V +L Sbjct: 263 KWRLRPGSLALRTTEQAQVLDRAARLVRPGGRIVYITCSLLSAENDAAVSGLLSGWRGRF 322 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 ++VP + D A + ++ + +G DGF+ + R+ Sbjct: 323 DVVPADEVLTAGPDSLRAAVRKTA------HGIQMSPLRTGTDGFYVAVIARK 369 >gi|224075639|ref|XP_002188018.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 [Taeniopygia guttata] Length = 431 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 89/447 (19%), Positives = 167/447 (37%), Gaps = 36/447 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M ++ +L + R L L+ + + A+V+ TLR+ ++ Sbjct: 1 MALYSAAAAVLLRLERGEGGLKSLVYNSGFPHVRQ---------LYALVSETLRYAAVLE 51 Query: 65 AVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE---NRHF 120 +LD L+ + + L ++L V +L+ A+R + Sbjct: 52 KLLDGAALLRAEKKLAPQLAKVL---VYDLLFGK--GLKCGGRWKALARRHRARLEAELA 106 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 V + R A S +P + + + + + L Sbjct: 107 RMKVRHKVSRNEDLLASEQAVSAAASQVPRYVRVNTLKTCVDDVIDFFKCQGYAYLGKAN 166 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +V+ +++ + K + L + + + + G +QD ++ +P L G + Sbjct: 167 SVE-ELKALSGKKFLLDLHLPELLVFPSQTDLHDNLLYTSGHIILQDKASCLPAFLLGPV 225 Query: 241 NNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 V+D CAAPG KT+ ++ + ++ A DV +R+ L R + +++ D Sbjct: 226 AGSHVIDACAAPGNKTSHLAAILKNKGQIFAFDVDPKRVATTNTLLTRAGVTGCQLVQQD 285 Query: 298 AFDYCPKKLFD----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 P+ +L+D CS +G + R P + + A FQR+ L +S Sbjct: 286 FLTVDPRDPKYSRVTHILLDPSCSGSGMVTRGPGEEVAPSAERLRALAGFQRRALSHALS 345 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 F +V+S CSL ++++EEVVQ VL+ LV W +A E + Sbjct: 346 FPALQ-RLVYSTCSLHREENEEVVQAVLQEWGSAFRLV-TAFPSWPCRGLAAFPGAESCL 403 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 R +P + GFF L R Sbjct: 404 RASP--------TETLTHGFFVAVLER 422 >gi|304403868|ref|ZP_07385530.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus curdlanolyticus YK9] gi|304346846|gb|EFM12678.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus curdlanolyticus YK9] Length = 590 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 130/338 (38%), Gaps = 50/338 (14%) Query: 144 GISIIPEWFKERLEN--FYGKERVLAISDACISPLYIDLTVKFDIETWAH---KLNAVML 198 +P F E+++ + ++ DA ++K E WA + Sbjct: 1 MKYDLPTVFVEQMKRLLDGQFDEFMSSYDAPRLYGLRSNSLKVGQEQWAKLSPWQLRPIP 60 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 G + + P + G++++Q+ SA PV+L VLDLCAAPGGK+ Q Sbjct: 61 WCGTGSYYDGEDRPGKHPYYHAGLYYIQEPSAMAPVELLDVQPGHRVLDLCAAPGGKSTQ 120 Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVD 313 + + + D + R + L N++ + ++ + P FD +LVD Sbjct: 121 IAAKLQGAGMLVSNDNAAERTKALAKNIELAGVRNAVVLNEEPASLVPAFTGWFDRILVD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ ++ + + + + QR +L + + PGG++V+S C+ ++ Sbjct: 181 APCSGEGMFRKDESMIAAWERHSVERCSLMQRDILRDAAAMLAPGGVLVYSTCTFSPVEN 240 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA----------------------LSPE- 410 E + +L + +E VP+ A + E Sbjct: 241 EAQIAAILAA-DDELEAVPVRLATGFVSGRPEWGQAAVDREDGAQQGEQQLHAAAATKED 299 Query: 411 --------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +R+ P +L+ G FA +RR Sbjct: 300 EADGWAACGMVRLWPHLLDGE--------GHFAAVIRR 329 >gi|331091190|ref|ZP_08340031.1| hypothetical protein HMPREF9477_00674 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404637|gb|EGG84176.1| hypothetical protein HMPREF9477_00674 [Lachnospiraceae bacterium 2_1_46FAA] Length = 461 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/270 (20%), Positives = 113/270 (41%), Gaps = 17/270 (6%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 ++V+ E ++ + G P + G++++Q+ SA P Sbjct: 41 ISVEKFKEICPFEIRPIPWIENGFYYDGDKVQPAKHPYYFAGLYYLQEPSAMTPANRLPI 100 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 VLD+CAAPGGK + + + A D+S R + L N++ + ++ Sbjct: 101 EPGDKVLDVCAAPGGKATELGAKLKGQGVLIANDISNSRAKGLLKNIEIFGVGNVLVLSE 160 Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + FD +L+DAPCS G R+ ++ + A QR +++Q Sbjct: 161 EPGKLEEYFPEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGPSFFAKIQRSIVMQAARM 220 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPE-- 410 +KPGG++++S C+ D +++E ++ +L+ P ++VP ++ + + Sbjct: 221 LKPGGMILYSTCTFDAEENEGTIEYLLKECPEFFLKDIVPYEGFAQGKPEVTESKLEDFR 280 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +RI P + G + L++ Sbjct: 281 KTVRIWPHKMHGE--------GHYLALLQK 302 >gi|119383346|ref|YP_914402.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans PD1222] gi|119373113|gb|ABL68706.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222] Length = 383 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 88/439 (20%), Positives = 140/439 (31%), Gaps = 77/439 (17%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +L ++ + L S F D+ VR +V LR L A+ + Sbjct: 11 IDILDRILD-GQAAEAALIRWARASRFAG--SGDRAAVRDLVFDALRRLRSRAALGGALS 67 Query: 72 ISSL-------PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 L + + + +V+ QA R L Sbjct: 68 GRGLLLGMCREEGIDPAT----------LFTGEGHAPSVLSEGEGQAGRAPTPDEALDLP 117 Query: 125 NSILR--RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 + +L R + +A P W + L A+++ I+ Sbjct: 118 DWLLPLWRKALGGDAEPVALAMRDRAPVWLRVNLRRADPARAAAAMAEQGIATAP----- 172 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 D+ T G + EG+ +QD S + L + Sbjct: 173 HPDLPTALRITEGARRLAGCH-------------AYREGLVELQDLSPQMACALLPAQGS 219 Query: 243 LSVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +LD CA GGK L GA VTA D+ R+ L +R + Sbjct: 220 --LLDFCAGGGGKALALAAQGAGPVTAHDIDAGRMADLPARAERAGVRIRLAAPGKV--- 274 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD V+ D PCS +GT RR PD W DD+ + A Q ++L Q FV GG + Sbjct: 275 --AGRFDTVVADVPCSGSGTWRRGPDAKWRLTRDDLEQLAARQCRILDQAAGFVADGGHL 332 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 + CS+ ++++ VQ L + R +L Sbjct: 333 AYMTCSVLDAENDDQVQGFLARN-----------------------------RRFEQVLA 363 Query: 422 KIDGVSSGMDGFFAVALRR 440 + + DGF+ +RR Sbjct: 364 RRFTPLTASDGFYLALMRR 382 >gi|262282377|ref|ZP_06060145.1| NOL1/NOP2/sun family protein [Streptococcus sp. 2_1_36FAA] gi|262261668|gb|EEY80366.1| NOL1/NOP2/sun family protein [Streptococcus sp. 2_1_36FAA] Length = 434 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 19/232 (8%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 P G+ + Q+ ++ + Q+ + VLDL AAPGGK+ + + + + Sbjct: 63 GKSPEHVTGLIYSQEPASQMVAQVAHPHEGMRVLDLAAAPGGKSTHLLSYLNNTGLLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +++ +R + L N++R + + FD +++DAPCS G R+ PD Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESAERLAKVFPSYFDLIVLDAPCSGEGMFRKQPD 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + D + A QR++L + + G +V+S C+ +++EE+V +L P+ Sbjct: 183 AMDYWSLDYPAQCAALQREILEDAVKMLANCGELVYSTCTWAPEENEEIVAWLLDEFPLE 242 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + +P + ID R+ P + F R Sbjct: 243 LVDLPKINGMTPGIDYPETA------RMYPHRFKGEGQ--------FVAKFR 280 >gi|292655744|ref|YP_003535641.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2] gi|291371381|gb|ADE03608.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2] Length = 313 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 111/311 (35%), Gaps = 26/311 (8%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPE 210 +R E + P + + +K + L+ + Sbjct: 3 PLQRYAPLVDDEEAFFAACERPLPSVVRVNTIKTTVARAREALDDEGVAYEPTDWHPGIL 62 Query: 211 SI------VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264 + + P F G Q+ +++P V D CAAPG KT Q+ Sbjct: 63 ELEDSSPGTNWPYFH-GWLHGQEEVSALPAIALDPQPGERVWDTCAAPGSKTTQIAAMMD 121 Query: 265 KV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------------LFD 308 D + RL LR N +RL + + DA ++ K FD Sbjct: 122 DEGVLVGNDNNLGRLSALRHNAERLGVTNLVVSNQDARNFSMKPYGERTPERDASFEQFD 181 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS GT R++PDVL + + A Q+ +L + + K GG VV+S C+ Sbjct: 182 RVLVDAPCSCEGTCRKNPDVLDEWTMNHVKSVAGIQKGILRRAVQVTKAGGTVVYSTCTF 241 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 ++E ++ VL V + + + + E +T ++ + Sbjct: 242 APDENEAILDFVLEREDCEVVEWDVPGGFETAPGITEWEGDEYDPSVT--KARRVYPHHN 299 Query: 429 GMDGFFAVALR 439 GFF L Sbjct: 300 DTGGFFTAKLE 310 >gi|331266100|ref|YP_004325730.1| NOL1/NOP2/sun family protein [Streptococcus oralis Uo5] gi|326682772|emb|CBZ00389.1| NOL1/NOP2/sun family protein [Streptococcus oralis Uo5] Length = 434 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 118/299 (39%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ F E+ ++ + V E+ +A+ G Sbjct: 1 MQFPKGFVEK-YEAILEDEARDFLASFKQEAVSAFRVNPLKESQLSFADAIPHTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K P G+ + Q+ +A + Q+ + VLDL AAPGGK+ Q + + Sbjct: 60 KVS----GKSPEHVTGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLTN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + K FD +++DAPCS G Sbjct: 116 QGVLVSNEISSKRAKILVENMERFGATNVVVTNESAGRLAKVFKGYFDVIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + TD + A QR++L ++ + GG +V+S C+ +++EE++ + Sbjct: 176 MFRKQPDAMDYWSTDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIIHWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ + + + R+ P + F L+ Sbjct: 236 LDTY--EFELLPVEHVNGMVAGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|148980382|ref|ZP_01816025.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3] gi|145961254|gb|EDK26566.1| Sun/nucleolar protein family protein [Vibrionales bacterium SWAT-3] Length = 449 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 20/261 (7%) Query: 191 HKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVL 246 +L V G + E + + G++++Q+AS+ +P N +VL Sbjct: 37 WELEPVPWCETGFWITADETETPLGNSAEHMSGLFYIQEASSMMPPSALFQGEENYQAVL 96 Query: 247 DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-- 301 D AAPG KT Q+ + + + A + + R++ L N++R + + D + Sbjct: 97 DTAAAPGSKTTQIAALMDNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGRVFGG 156 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FDAVL+DAPCS GTIR+ D + +V+ A Q+ L+ +KP G++ Sbjct: 157 WLPEQFDAVLLDAPCSGEGTIRKDADAIKNWTYQSVVEIADTQKDLIESAFHALKPNGVL 216 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+L +++++V + + VE L S + + + EG++ I P + + Sbjct: 217 VYSTCTLSTEENQQVCHHLKETFGDAVEFESLESLF---DNAKATTTEEGFLHIFPQVYD 273 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 GFF +R+L Sbjct: 274 SE--------GFFVARIRKLA 286 >gi|42519213|ref|NP_965143.1| hypothetical protein LJ1288 [Lactobacillus johnsonii NCC 533] gi|41583501|gb|AAS09109.1| hypothetical protein LJ_1288 [Lactobacillus johnsonii NCC 533] Length = 463 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 121/302 (40%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ +N G+E A SP + + ++ P + Sbjct: 1 MSLPIEFVEKYKNLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 E + G + QD SA P VLDLCAAPGGK+ L + Sbjct: 61 GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R +I D FD +LVDAPCS G Sbjct: 121 TGLLVANEISKSRAKDLRENLERWGATNVVVINESPDRLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P D ++ Q+++L + + +KPGG +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPGGEIVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + P+ +E + L S D + + PE +R+ F Sbjct: 241 VENYPLEIEPLKLYSGMSAGRPDWSKSNMPELKETVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 L+ Sbjct: 293 LK 294 >gi|301802143|emb|CBW34880.1| NOL1/NOP2/sun family protein [Streptococcus pneumoniae INV200] Length = 434 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 110/284 (38%), Gaps = 16/284 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 L + V + ID+ R+ P + Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEG 273 >gi|39997843|ref|NP_953794.1| NOL1/NOP2/sun family protein [Geobacter sulfurreducens PCA] gi|39984788|gb|AAR36144.1| NOL1/NOP2/sun family protein [Geobacter sulfurreducens PCA] gi|298506778|gb|ADI85501.1| NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family protein [Geobacter sulfurreducens KN400] Length = 319 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 10/239 (4%) Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAK 265 ++ P F EG ++Q S+ +VLDL AAPGGKTA + + + + Sbjct: 81 RRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGGKTAMMAAMMENRGR 140 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323 ++A++ + R +++ NLD D K FD VL+DAPCSS Sbjct: 141 LSAVEAVRGRFFRMKANLDHQGATMVRTYLTDGRSVGRKCPEMFDRVLLDAPCSSEARFT 200 Query: 324 RHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R W + ++A QR L+ + ++PGG++++ CS +++E +V VLR Sbjct: 201 RLNPESWAHWSPRKVEEAARKQRGLIRSALEALRPGGLLLYCTCSFSPEENELIVNDVLR 260 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG-MDGFFAVALRR 440 + + ++ + L+ + PD+ + + MDGFF +R+ Sbjct: 261 RDGDNLRVCAVD---LPLPNRRPGLTRWKGKELHPDLARAVRILPDRLMDGFFLCLIRK 316 >gi|194679118|ref|XP_593209.3| PREDICTED: NOL1/NOP2/Sun domain family, member 5-like [Bos taurus] Length = 317 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 23/251 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L V+D CAAPG KT+ L Sbjct: 45 VFPAQTDLHDHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLK 104 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCS 317 + K+ A D +RL + L R + ++ E D P +L+D CS Sbjct: 105 NQGKIFAFDQDAKRLASMATLLARAGVSCCELAEQDFLAVSPSDQRYCQVQYILLDPSCS 164 Query: 318 STGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R + + + + A FQ++ L ++F ++ +V+S CS+ ++++ Sbjct: 165 GSGMPSRQLEEPKSCTPSPERLRALAAFQQRALSHALTFPALR---RLVYSTCSVCQEEN 221 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+VV+ L+ SP L P+ + W ++ E +R +P+ GF Sbjct: 222 EDVVRAALQQSPGAFRLAPVLPS-WPHRGLSAFPGAEHCLRASPETTL--------TGGF 272 Query: 434 FAVALRRLIQP 444 F L R+ +P Sbjct: 273 FIAVLERVEEP 283 >gi|167756652|ref|ZP_02428779.1| hypothetical protein CLORAM_02189 [Clostridium ramosum DSM 1402] gi|237733940|ref|ZP_04564421.1| RNA methylase [Mollicutes bacterium D7] gi|167702827|gb|EDS17406.1| hypothetical protein CLORAM_02189 [Clostridium ramosum DSM 1402] gi|229383021|gb|EEO33112.1| RNA methylase [Coprobacillus sp. D7] Length = 440 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 108/283 (38%), Gaps = 24/283 (8%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGGIRLKELPESIVSLPGFAEGV 222 A + LN + P F G+ Sbjct: 20 FESALNQKPIKSFYLNPLKHGSIEHLNSAFLTKHPYINDAYFYDYENYQLGKHPYFNCGL 79 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 +++Q+ SA ++ VLD+CAAPGGKT + A D++K R L Sbjct: 80 YYIQEPSAMAVANCLDFDHDDYVLDMCAAPGGKTCFTASKLSSAGLMIANDINKLRAGIL 139 Query: 280 RCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R L + D FD +++DAPCS G R+ + T + + Sbjct: 140 SENVERFGLQNTIVTNSDPVKLEKYFNNFFDKIILDAPCSGEGMFRKLDQAVETWSIEKV 199 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A QR L+ +K GI+++S C+ +++E+ V+ + ++ + +EL+ + Sbjct: 200 NECAYIQRNLINSAYQMLKDEGILIYSTCTYSLEENEDQVKYM--TNDLQMELLEIK--- 254 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K MA + +R+ P + + F L++ Sbjct: 255 -KQPGMASGYQNDKVVRMYPHLNKGEGQ--------FIALLKK 288 >gi|90961974|ref|YP_535890.1| putative 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius UCC118] gi|301301011|ref|ZP_07207172.1| NOL1/NOP2/sun family protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821168|gb|ABD99807.1| Putative 23S rRNA m(5)C methyltransferase [Lactobacillus salivarius UCC118] gi|300851368|gb|EFK79091.1| NOL1/NOP2/sun family protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 456 Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 118/303 (38%), Gaps = 20/303 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F E+ + G + A + I + + + + Sbjct: 1 MDLPKEFIEKYQKLLG-DEAEAFLASLDEKSVIGFRLNPLKRHYKDVDYDLTASVPFAQD 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 + + G + QD SA + VLDLCAAPGGK+ Q + + Sbjct: 60 GFIGKVSGRSLEHQAGYVYSQDLSAMYVAAVANAQPGDKVLDLCAAPGGKSTQLAEQLNN 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R+ I D K FD ++VDAPCS G Sbjct: 120 QGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLAKVFKGYFDKIVVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ + D + A Q+ +L + + +K GG +V+S C+ ++ E++V + Sbjct: 180 MFRKDHSAVKYWHKDYPAECAHRQKLILEEAMKMLKTGGELVYSTCTFAPEEDEQIVAWL 239 Query: 381 LRSSPIPVELV----PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 L + + +E + ++S + D L+ IR+ P E F Sbjct: 240 LENYDLTLEPITKYDGMDSGRPEFADGNEDLTK--TIRLMPHHFEGEGQ--------FLA 289 Query: 437 ALR 439 L+ Sbjct: 290 KLK 292 >gi|289167577|ref|YP_003445846.1| hypothetical protein smi_0731 [Streptococcus mitis B6] gi|288907144|emb|CBJ21978.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 434 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 114/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YEEILGDEARDFLASFEEEAVSAFRVNPLKEAPGSFPDAIPQTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGFLVSNEISSKRAKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V+ + Sbjct: 176 MFRKQPDAMDYWSLDYPNQCASLQREILEDAVTMLAEGGRLVYSTCTWAHEENEEIVKWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + V + ID+ R+ P + F L+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPETA------RMYPHQFKGEGQ--------FVAHLQ 280 >gi|297623339|ref|YP_003704773.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164519|gb|ADI14230.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093] Length = 466 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 74/304 (24%), Positives = 109/304 (35%), Gaps = 30/304 (9%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE------ 210 A+ A P ++ L V +++ + A+ Sbjct: 11 MQALLGGEAEALFGALQGPPHVGLRVNT-LKSAPERFEALSPWPLERLPWCRSGYRLRVP 69 Query: 211 ----SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSG 263 P A GV+++Q+ SA + VLDL AAPGGK L Sbjct: 70 EGAPRPGLHPLHAAGVYYLQEPSAMAVAEAVAPEPGAWVLDLAAAPGGKATHLGALLRGS 129 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGT 321 + A +V R+ L NL+R + ++ + LFD VL+DAPCS G Sbjct: 130 GLLVANEVVPGRVRALGENLERCGVPNALLVSEPVERLAARWGGLFDYVLLDAPCSGEGM 189 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R+ D L T + + A QR LL + + VKPGG++V+S C+ +++E V L Sbjct: 190 FRKSDDALAMWSTATVARCALRQRALLGEAAALVKPGGVLVYSTCTFAPEENEGAVAAFL 249 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDGVSSGMDGFFAV 436 R+ P L PL A R P G F Sbjct: 250 RAHP-EFTLAPLTLPGAAPGRPDWAADEADASLAHAARFWPHRAPGE--------GHFVA 300 Query: 437 ALRR 440 L R Sbjct: 301 RLHR 304 >gi|332366475|gb|EGJ44223.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1059] Length = 434 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGTEAADFFATFEEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYS 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D+ + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVVVTNESADSLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVSWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|71005896|ref|XP_757614.1| hypothetical protein UM01467.1 [Ustilago maydis 521] gi|46097107|gb|EAK82340.1| hypothetical protein UM01467.1 [Ustilago maydis 521] Length = 674 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 123/316 (38%), Gaps = 23/316 (7%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 + E+L + + +A +P + + A L + Sbjct: 295 CTYYGYNAFLAEKLFELFTPAEAIEFFEANETPRPVTIRANTLRTRRRDLAQALINRGVN 354 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I I + P + G + +Q AS+ +P N VLD+ +A Sbjct: 355 LEPIGAWSKVGLQVFESSVPIGATPEYLAGHYMLQAASSFLPCIALAPQPNERVLDMASA 414 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PGGK+ L + + V A D +K R++ L N+ RL + D + F Sbjct: 415 PGGKSTYLSALMQNTGTVFANDSNKNRIKSLVANIHRLGCKNVVVCNYDGRQFPKVIGGF 474 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP----GGIVVF 363 D VL+D+PCS TG I + V + D Q++LLL I V P GG VV+ Sbjct: 475 DRVLLDSPCSGTGVIHKDQSVKVNKSERDFALLTHLQKQLLLCAIDSVNPRSSTGGYVVY 534 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS+ +++EEVVQ LR V++V + + + S + +I Sbjct: 535 STCSVMVEENEEVVQYALRKRSN-VKIVDTGIQFGRDGFKSFGRSKFDERMVY---ARRI 590 Query: 424 DGVSSGMDGFFAVALR 439 +DGFF L+ Sbjct: 591 FPHVHNLDGFFVCKLK 606 >gi|168334695|ref|ZP_02692831.1| sun protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 229 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 21/238 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + R + L V ++ L +L +L RD+ L I TL++ Sbjct: 1 MK---HLREIVVDALVKVEKEGAYLQLVL-----KKDLEILESRDRGLATEIATGTLKYQ 52 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID +++ V + + K ++ L+R+SV Q+ YLD V +A ++ AV+ AK + Sbjct: 53 IAIDYIINQVSSIKVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKS-RGFAG 111 Query: 120 FAKLVNSILRRVSREKIE-LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +K VN +LR + R I + + IPEW E + YG + I ++ + + Sbjct: 112 LSKFVNGVLRSIERSNIALPAKNWSVYYSIPEWIIELWVSSYGSDIAKQICESTTARAEV 171 Query: 179 DLTVKF---DIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 V + L + E +SI +P F + +Q Sbjct: 172 VARVNTLKVSRDELVECLKLDGLATKPAAIFEDEYLYLEGAQSIADMPSFVSRFFTIQ 229 >gi|302561751|ref|ZP_07314093.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302479369|gb|EFL42462.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 334 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 77/240 (32%), Gaps = 21/240 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L + RD L +V TLR D Sbjct: 22 PVRILAFEALRAVDERDAYANLVLPPLLRKARENGDFEARDAALATELVYGTLRRQGTYD 81 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + Q+L + +A V VE A+ + AK V Sbjct: 82 AVVAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRAKFV 140 Query: 125 NSILRRV-------------SREKIELLQRIAGISIIPEWFKERLENFYGKERV--LAIS 169 N++LR++ + +A + P W L + G R + Sbjct: 141 NAVLRKIAQDDLDGWLERVAPPYDQDPEDHLAVVHSHPRWVVSALWDSLGGGRAGIEELL 200 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 A + L + T A L+ G + P ++ G G + Sbjct: 201 RADNDRPEVTLVARPGRATPAELLDEEAAEPG----RWSPYAVRLTEGGEPGAITAVGEA 256 >gi|302386349|ref|YP_003822171.1| Fmu (Sun) domain protein [Clostridium saccharolyticum WM1] gi|302196977|gb|ADL04548.1| Fmu (Sun) domain protein [Clostridium saccharolyticum WM1] Length = 454 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 109/252 (43%), Gaps = 18/252 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 E E P + G++++Q+ SA P L + VLDLCAAPGGK+ Sbjct: 62 PWIPNGFYYEGDERPAKDPYYYAGLYYLQEPSAMTPASLLNIVPGDKVLDLCAAPGGKST 121 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLV 312 + + + + D+S R + L NL+ + + E + FD +LV Sbjct: 122 ELGAKLKGKGLLVSNDISSSRAKALLKNLELWGIGNICVTSEEPKKLKEAFGEFFDKILV 181 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ D++ + + A QR+++ Q + + GG +++S C+ + Sbjct: 182 DAPCSGEGMFRKDGDMVKSYEEHGPEYYAGIQREIMDQAVDMLVAGGFLLYSTCTFSLCE 241 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +E+++++ L +EL+ L + +S G +R+ P + G Sbjct: 242 NEDIIRRTLELHK-DMELISLPLFE----GASGGISLSGCLRLFPHKIRGE--------G 288 Query: 433 FFAVALRRLIQP 444 F L++ P Sbjct: 289 HFMALLKKKGSP 300 >gi|228477488|ref|ZP_04062124.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus salivarius SK126] gi|228250923|gb|EEK10111.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus salivarius SK126] Length = 436 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 112/299 (37%), Gaps = 23/299 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P F E+ N ++ + + +A+ G Sbjct: 1 MQFPSDFIEK-YNNLLRDEAEDFFASFDQEAVSAYRTNPLKKQQKDFPDAIPETPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K A G+ + Q+ +A + Q+ VLDL AAPGGK+ + + Sbjct: 60 KIS----GKSADHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGGKSTHLLSYLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D K FD ++ D PCS G Sbjct: 116 TGLLVSNEINPKRSKILVENIERFGARNVIVTNTSADKLVKVFKNYFDTIVFDGPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + + + A Q+ +L G+ + PGG +++S C+ +++E VV + Sbjct: 176 MFRKDPDAIQYWHKEYPNELAQLQKDILSDGLKMLAPGGQLIYSTCTWSPEENEGVVAWI 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L ++P +ELV + S + + R+ P + F + Sbjct: 236 LENNP-DLELVAIPKLNGMSDGIDFPETA----RMYPHHFKGEGQ--------FVAKFQ 281 >gi|163814116|ref|ZP_02205508.1| hypothetical protein COPEUT_00269 [Coprococcus eutactus ATCC 27759] gi|158450565|gb|EDP27560.1| hypothetical protein COPEUT_00269 [Coprococcus eutactus ATCC 27759] Length = 469 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 119/311 (38%), Gaps = 25/311 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAVML 198 ++P+ F ER+++ G E I S +Y + V + +L V Sbjct: 1 MVLPKKFDERIKSQLGDEYDDYIKC-FDSDMYHGIRVNTSKISVEDFLKISPFELEPVPW 59 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 G + P + G++++Q+ SA P + VLD+CAAPGGK+ + Sbjct: 60 TKNGFYYDHKKYTPSKHPYYYAGLYYIQEPSAMTPASVLDIDEGDVVLDICAAPGGKSTE 119 Query: 259 LIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVD 313 L + + D+S R + L NL+ + ++ + ++ FD +L+D Sbjct: 120 LAAKLGGTGILISNDISNSRAKALLKNLELFGIGNMCVVSEPPNNLSKAFEETFDKILID 179 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ ++ + + A QR +L + +KPGG +++S C+ ++ Sbjct: 180 APCSGEGMFRKSSSMMTAWENNGTELFAGLQRGILKEVCKMLKPGGRLLYSTCTFSPEED 239 Query: 374 EEVVQKVLR----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 E V+ +L I + R+ P L+ Sbjct: 240 ERSVEYLLSIDDCIHLIDFPKYEKFDDGNPEWGETGNPDLKKCARLWPHHLKGE------ 293 Query: 430 MDGFFAVALRR 440 G F + Sbjct: 294 --GHFIALFEK 302 >gi|322384175|ref|ZP_08057885.1| hypothetical protein PL1_1809 [Paenibacillus larvae subsp. larvae B-3650] gi|321151067|gb|EFX44384.1| hypothetical protein PL1_1809 [Paenibacillus larvae subsp. larvae B-3650] Length = 465 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 33/248 (13%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + P A G++++Q+ SA ++ VLDL AAPGGK++ Sbjct: 70 PWCPTGYYYKEETRPGKHPYHAAGLYYLQEPSAMSAAEILNPEPGDIVLDLAAAPGGKSS 129 Query: 258 QLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q+ + A ++ R + L N++R+ ++ K FD ++V Sbjct: 130 QIAGKLLGRGLLVANEIHPGRAKILAENIERMGAGNVLVVNASPQQLAEKLPLFFDKIIV 189 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ P+ + + + A Q +L I +KPGG++V+S C+ ++++ Sbjct: 190 DAPCSGEGMFRKDPEAIKEWSPEHVQMCAARQMDILPDAIRMLKPGGLLVYSTCTFNQEE 249 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +E ++ +L P +S E RI P + + G Sbjct: 250 NEGTIRALLADYPEM-----------------RLISEE---RIWPHLQKGE--------G 281 Query: 433 FFAVALRR 440 + L + Sbjct: 282 HYVALLAK 289 >gi|323351785|ref|ZP_08087439.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis VMC66] gi|322122271|gb|EFX93997.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis VMC66] Length = 434 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 23/292 (7%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 E E E + +A+ G K +S Sbjct: 7 FEEKYEQILGEEAADFFATFDEEPISSFRSNPLKEGQQNFSDAIPQTDWGFYGKVSGKSA 66 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + + + Sbjct: 67 EHVTG----LVYSQEPAAQMVAQIAAPSKEMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +++ +R + L N++R + + + FD +++DAPCS G R+ PD Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEGMFRKQPD 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 D + A QR++L +S + G +V+S C+ +++E++V +L P+ Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWLLEEFPLE 242 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + +P + + I R+ P + FA R Sbjct: 243 LIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|153853073|ref|ZP_01994482.1| hypothetical protein DORLON_00467 [Dorea longicatena DSM 13814] gi|149753859|gb|EDM63790.1| hypothetical protein DORLON_00467 [Dorea longicatena DSM 13814] Length = 458 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 54/259 (20%), Positives = 109/259 (42%), Gaps = 19/259 (7%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 ++ + G S P + G++++Q+ SA P VLD+CAA Sbjct: 53 EIRKIPWIENGFYYDGDKVSPAKHPYYFAGLYYLQEPSAMTPANRLPVEPGDKVLDVCAA 112 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306 PGGK + + + A D+S R + L N++ + + E + + Sbjct: 113 PGGKATELGAKLQGEGVLIANDISSSRAKGLLKNIEVFGIGNVLVLSEEPGRLENYFTEY 172 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS G R+ ++ + + QR ++LQ +KPGG++++S C Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFSNLQRNIILQAARMLKPGGLMLYSTC 232 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLE 421 + D ++E +++ + + P ++P+ + + + +RI P ++ Sbjct: 233 TFDPSENERIIEHLKKEYP-EFHVLPMENYEGFCPGIPEVTEEKDEELKKTVRIFPHKMK 291 Query: 422 KIDGVSSGMDGFFAVALRR 440 G + L++ Sbjct: 292 GE--------GHYVALLQK 302 >gi|261408357|ref|YP_003244598.1| Fmu (Sun) domain-containing protein [Paenibacillus sp. Y412MC10] gi|261284820|gb|ACX66791.1| Fmu (Sun) domain protein [Paenibacillus sp. Y412MC10] Length = 462 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 95/247 (38%), Gaps = 33/247 (13%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + P A G++++Q+ SA V+L ++LDL AAPGGKT+ Sbjct: 65 WCDTGYYYDESVRPGKHPYHAAGLYYIQEPSAMSAVELLNPQPGETILDLAAAPGGKTSH 124 Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVD 313 ++ + + ++ R L N++R+ + + D FD +++D Sbjct: 125 IASKMMGRGLLVSNEIHPERARILAENVERMGITNTVVTSAAPDQLSRRFVACFDRIMLD 184 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ + + + Q ++ + +KPGG + +S C+ + ++ Sbjct: 185 APCSGEGMFRKDAAAIAEWSPEHVDLCVARQWDIVQEAYRMLKPGGTLAYSTCTFNTAEN 244 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE+++ +L P L + R+ P + G Sbjct: 245 EEMIEHILSQYPD--------------------LELQQMKRLWPHLERGE--------GH 276 Query: 434 FAVALRR 440 F L + Sbjct: 277 FVAILVK 283 >gi|323691877|ref|ZP_08106131.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14673] gi|323504084|gb|EGB19892.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14673] Length = 468 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 126/304 (41%), Gaps = 25/304 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLN---AVMLPTG 201 +P + E+++ KE P + L V E +A + + G Sbjct: 6 LPSDYLEKMKKL-LKEEFEDYLTCFSEPPHYGLRVNRLKCTPEQFAAECGWKLTQIPWAG 64 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--- 258 + P + G++++Q+ SA P L VLDLCAAPGGK+ + Sbjct: 65 DGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGDKVLDLCAAPGGKSTELAA 124 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPC 316 + + + D+S R + L NL+ + + + FD +LVDAPC Sbjct: 125 KLQGEGLLFSNDISNSRAKALLKNLELAGAGNICVSSETPEKLARYFEGFFDKILVDAPC 184 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G RR D++ + Q +++ + + ++PGG++++S C+ D++++E Sbjct: 185 SGEGMFRRDGDMVKSYSQKGPEYYNRIQYEIVSEAVKMLRPGGMMLYSTCTFDEEENEGT 244 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 ++++L+ + LVPL + ++ +R+ P + G F Sbjct: 245 IRRLLKEH-DDLHLVPLEKQDGFQPGIGLSE----CVRLFPHKIRGE--------GHFIA 291 Query: 437 ALRR 440 L++ Sbjct: 292 LLKK 295 >gi|270288816|ref|NP_001161819.1| putative methyltransferase NSUN5 isoform 3 [Homo sapiens] gi|194389950|dbj|BAG60491.1| unnamed protein product [Homo sapiens] Length = 470 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 154/409 (37%), Gaps = 29/409 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 A W ++ E +R +P+ GFF + R+ P Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVP 428 >gi|332361837|gb|EGJ39640.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK355] Length = 434 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 26/244 (10%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + + + Sbjct: 63 GKSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +++ +R + L N++R + + + FD +++DAPCS G R+ PD Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESAERLAQVFQGYFDLIVLDAPCSGEGMFRKQPD 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 D + A QR++L +S + G +V+S C+ +++E +V +L P+ Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEGIVAWLLEEFPLE 242 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-------R 440 + +P + + I R+ P + FA R + Sbjct: 243 LIDIPKVNGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFRYTGENSCK 288 Query: 441 LIQP 444 I+P Sbjct: 289 KIKP 292 >gi|327461399|gb|EGF07730.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1] gi|327474034|gb|EGF19447.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK408] gi|327489257|gb|EGF21050.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1058] Length = 434 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 19/232 (8%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + + + Sbjct: 63 GKSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +++ +R + L N++R + D FD +++DAPCS G R+ PD Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEGMFRKQPD 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 D + A QR++L +S + G +V+S C+ +++E++V +L P+ Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWLLEEFPLE 242 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + +P + + I R+ P + FA R Sbjct: 243 LIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|332867777|ref|XP_519138.3| PREDICTED: putative methyltransferase NSUN5 [Pan troglodytes] Length = 470 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 154/409 (37%), Gaps = 29/409 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDSLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYREVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 A W ++ E +R +P+ GFF + R+ P Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSG--------GFFVAVIERVEVP 428 >gi|295424864|ref|ZP_06817579.1| NOL1/NOP2/sun family protein [Lactobacillus amylolyticus DSM 11664] gi|295065430|gb|EFG56323.1| NOL1/NOP2/sun family protein [Lactobacillus amylolyticus DSM 11664] Length = 463 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 20/303 (6%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P+ F E+ + GKE+ A+ ++ + + Sbjct: 3 NLPDTFIEKYQKLLGKEKAAALFESMNQETKKAYRINSLKAHQKVSYSNAQAVPFIPNAY 62 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263 P + G + QD +A P L VLDLCAAPGGKT + + + Sbjct: 63 YGEVK-GEDPEWVSGTVYSQDPAAMFPAYLAQIEPGQKVLDLCAAPGGKTTALGEALQNA 121 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 + A ++S R++ LR NL+R + I D+F FD +LVDAPCS G Sbjct: 122 GLLVANEISSVRVKALRENLERWGISNALITNDDSFALAKVFPEFFDVILVDAPCSGEGM 181 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++PD + D ++ Q+++L + + ++PGG +V+S C+ ++ EE+V ++ Sbjct: 182 FRKNPDAVSYWSPDYVLTCRKRQQEILTEAVKKLRPGGKLVYSTCTFSPEEDEEIVAWLV 241 Query: 382 RSS-----PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 ++ P VE ++ + +D + + +R+ P F Sbjct: 242 KTFQMTIEPTQVESKKISHGQARFVDDNLPEL-DRTLRLWPQDDLGEGQ--------FVA 292 Query: 437 ALR 439 LR Sbjct: 293 VLR 295 >gi|308807909|ref|XP_003081265.1| Fmu (ISS) [Ostreococcus tauri] gi|116059727|emb|CAL55434.1| Fmu (ISS) [Ostreococcus tauri] Length = 276 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 99/236 (41%), Gaps = 16/236 (6%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266 I + + EG + VQD + + V VLD CA GGKT + Sbjct: 49 PANGGIFGVNAWREGWFEVQDEGSQLIVAALEAKAGERVLDACAGNGGKTLAIAAEMKFG 108 Query: 267 TAL--DVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 D+ +RRL L N +R ++ + + FDAVLVDAPCSS G +R Sbjct: 109 EVCVFDIDRRRLAHLEANAERAGSRDMVTTVQGTSLQDLAPQSFDAVLVDAPCSSVGALR 168 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R P + D D + A Q +L + + VKPGG +V++ CS+ ++ EVV+ Sbjct: 169 RTPSLRHMHD--DPNELAKIQLGILREAAALVKPGGRLVYATCSVLSFENHEVVRAFESE 226 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 E +P + A+ I + E + P + G DGFF R Sbjct: 227 FADIYEPLPFDDAF---IAASRERDREHERSLLPHL--------HGTDGFFIARFR 271 >gi|284165311|ref|YP_003403590.1| RNA methylase, NOL1/NOP2/sun family [Haloterrigena turkmenica DSM 5511] gi|284014966|gb|ADB60917.1| RNA methylase, NOL1/NOP2/sun family [Haloterrigena turkmenica DSM 5511] Length = 302 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 101/261 (38%), Gaps = 19/261 (7%) Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 L L+ S S G Q+ +++P + V D C Sbjct: 47 EEGLAYEQADWNPRVLRLETGSPGSTWTSFHGFTHGQEEVSAVPPVVLDPQPGERVWDSC 106 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---- 302 AAPGGK QL + V A D + R+ LR N +RL + + DA +Y Sbjct: 107 AAPGGKATQLAALMGDEGTVVANDNNLGRISALRFNAERLGATSLAVTNADARNYSLNRF 166 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD LVDAPC+ GTIR++PD L I + Q+ +L + I + GG VV Sbjct: 167 DFDEFDRALVDAPCTCEGTIRKNPDTLDNWSEGAIASVSGVQKGILRRAIQATREGGTVV 226 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPD 418 +S C+ +++E VVQ + V ++ Y + S E RI P Sbjct: 227 YSTCTFAPEENEAVVQHAVEEEDCRVVDFDIDLEYAPGLTEWDGEEFDSSLERAARIYPH 286 Query: 419 MLEKIDGVSSGMDGFFAVALR 439 + GFF L Sbjct: 287 --------QNDTGGFFVAKLE 299 >gi|84394273|ref|ZP_00992999.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01] gi|84375112|gb|EAP92033.1| Sun/nucleolar protein family protein [Vibrio splendidus 12B01] Length = 473 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 121/265 (45%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242 + +L V G + E + + G++++Q+AS+ +P ++ Sbjct: 57 KEKGWELEPVPWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEVDY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 QAVLDTAAAPGSKTTQIAALMNNRGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GTIR+ D + +V A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G++V+S C+L +++++V + + VE L S + + + EG++ I P Sbjct: 237 NGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLESLF---DNAKATTTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDSE--------GFFVARIRKLA 310 >gi|322387522|ref|ZP_08061131.1| NOL1/NOP2/sun family protein [Streptococcus infantis ATCC 700779] gi|321141389|gb|EFX36885.1| NOL1/NOP2/sun family protein [Streptococcus infantis ATCC 700779] Length = 437 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 66/299 (22%), Positives = 117/299 (39%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ F ++ + A + + E +A+ G Sbjct: 1 MQFPDGFVKK-YETILGDEARAFLASFDDEAVSAFRINPLKERQLSFSDAIPNTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHVTGLVYSQEPAAQMVAQVAQPKPGMKVLDLAAAPGGKSTQLASYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 DGLLVSNEISSKRSKILVENMERFGATNVVVTNESADRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L I+ + GG +V+S C+ +++EE+VQ + Sbjct: 176 MFRKQPDAMDYWSVDYPSQCASLQREILSDAITMLADGGRLVYSTCTWAPEENEEIVQWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L S EL+P+ + + + R+ P + F L+ Sbjct: 236 LDSY--HFELIPVQHINGMVPGIDLPETA----RMYPHHFKGEGQ--------FVAHLQ 280 >gi|331004266|ref|ZP_08327744.1| hypothetical protein HMPREF0491_02606 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411431|gb|EGG90843.1| hypothetical protein HMPREF0491_02606 [Lachnospiraceae oral taxon 107 str. F0167] Length = 466 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 20/241 (8%) Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKV 266 +SI P + G++++Q+ SA P G ++ VLDLCAAPGGK+ Q ++ + Sbjct: 89 KSISKNPYYFAGLYYIQEPSAMTPAMAAGIVSGDKVLDLCAAPGGKSTQAASYLMGEGLL 148 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRR 324 + D S R++ L+ N++ + I D + FD ++VDAPCS G RR Sbjct: 149 VSNDFSASRVKALQKNIEVSGIDNVLITNEDPKNLSKVYIEYFDKIIVDAPCSGEGMFRR 208 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 V Q +L + +KPGG +++S C+ K + E + + L S Sbjct: 209 DSAVFKAYLGRGPEFFTGLQVSILTEAAKMLKPGGTLIYSTCTYSKVEDEGSLLQFLESH 268 Query: 385 PIP-VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ + + + +S ++ G IR+ P +E G F L++ I+ Sbjct: 269 KEFKIDKIATDFGFEESKELP------GTIRLFPHKIEGE--------GHFVARLKKDIK 314 Query: 444 P 444 P Sbjct: 315 P 315 >gi|159898460|ref|YP_001544707.1| NOL1/NOP2/sun family RNA methylase [Herpetosiphon aurantiacus ATCC 23779] gi|159891499|gb|ABX04579.1| putative RNA methylase, NOL1/NOP2/sun family [Herpetosiphon aurantiacus ATCC 23779] Length = 481 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 111/270 (41%), Gaps = 22/270 (8%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV--QLFGTLNNLSV 245 + +L V G +L+ ++ G +++QDA++ +PV SV Sbjct: 54 QYGWQLEQVPFCPTGWQLRNEVGNLSRTVEHQMGHYYIQDAASMLPVELFELPPEAEPSV 113 Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFD 300 LDL AAPGGKT +I V A D + +R+ L+ N+ R + I + Sbjct: 114 LDLTAAPGGKTTHIISQLQDRGLVVANDSNLQRIAGLKGNIQRWGSTSAVITNQPGERMG 173 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD VL+DAPCS + + Q KLL + +P G Sbjct: 174 RWLPEQFDYVLLDAPCSGEALRTSERHTSRLVSSHERNTLQQRQIKLLESALQAARPNGH 233 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-------I 413 VV+S CSL ++ E V+ +L+ P ++++ + ++ +A + + + Sbjct: 234 VVYSTCSLAPEEDEAVLDALLKRYPEQIQIMSIPTSVPIEAPGLLAAGSQHYDPSIAKAL 293 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 R+ P + GFFA + + Q Sbjct: 294 RLWPHLY--------NTAGFFAALIIKRDQ 315 >gi|94994502|ref|YP_602600.1| 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10750] gi|94548010|gb|ABF38056.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10750] Length = 436 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 109/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L + +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALVMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|94990580|ref|YP_598680.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10270] gi|94544088|gb|ABF34136.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS10270] Length = 436 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 109/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSPEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L + +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALVMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|326435871|gb|EGD81441.1| hypothetical protein PTSG_02162 [Salpingoeca sp. ATCC 50818] Length = 798 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 70/283 (24%), Positives = 105/283 (37%), Gaps = 67/283 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------KVTAL 269 +G Q+A + IP L + VLD+CAAPG KTAQLI V A Sbjct: 194 EQGNISRQEAVSMIPPFLLDVKPHHKVLDMCAAPGSKTAQLIEMIHAEGNSMPEGLVVAN 253 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSS 318 D +R L RL I DA + + FD VL D PCS Sbjct: 254 DADNKRCYMLVHQTKRLQSPCFMITNHDASIFPSLYTTAADGTKQRLYFDRVLADVPCSG 313 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 GT+R++ + + + + + Q ++L +G+ + G++V+S CSL+ ++E VV Sbjct: 314 DGTLRKNVTIWRSWNPMNAIGLHPLQSRILERGLQLLAVDGLIVYSTCSLNPIENEAVVA 373 Query: 379 KVLRSSPIPVELVPLNSA---------------------------------------YWK 399 +LR VELV ++S + Sbjct: 374 HMLRKHKGSVELVDVSSQLPRLRRSPGLKTWTIMDRSQNVYASPEDCKDNSKIHTTMFPP 433 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 S D + E R+ P + GFF LR+ Sbjct: 434 SKDELEWMRLERCCRLLPHHQD--------TGGFFVAVLRKTA 468 >gi|332359770|gb|EGJ37585.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK49] Length = 434 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P +EL+ ++ + + + R+ P + FA R Sbjct: 236 LEEFP--LELIDISKINGMTEGIGFPETA----RMYPHRFKGEGQ--------FAAHFR 280 >gi|328946085|gb|EGG40231.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1087] Length = 434 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P +EL+ ++ + + + R+ P + FA R Sbjct: 236 LEEFP--LELIDISKINGMTEGIGFPETA----RMYPHRFKGEGQ--------FAAHFR 280 >gi|310658497|ref|YP_003936218.1| RNA methylase, nol1/nop2/sun family [Clostridium sticklandii DSM 519] gi|308825275|emb|CBH21313.1| putative RNA methylase, NOL1/NOP2/sun family [Clostridium sticklandii] Length = 455 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 19/264 (7%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 +++ A + + + ++ + P + G++++Q+ SA V + Sbjct: 46 ELKAIADFIGEEIPWSQDGFYYDINQRPAKSPLYHAGLYYIQEPSAMAVVNNIEIQPGMK 105 Query: 245 VLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+CAAPGGKT + + + D++ +R + + N++ + I + Sbjct: 106 VLDICAAPGGKTINIASKLKGEGLLVSNDINNQRTKAILKNIELYGVSNALITNENHHVL 165 Query: 302 CPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +++DAPCS G R+ D++ + ++++ Q++LL ++PGG Sbjct: 166 EKVFLEFFDRIILDAPCSGEGMFRKDEDLIKSW-ERSVIETIPVQKELLDSCALMLRPGG 224 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 I+++S C+ ++ ++E+ + L + E + + + S R+ P Sbjct: 225 IMIYSTCTFNEDENEKQILDFLARN-DNFECIEIPKCNGLISRDILPQSA----RLLPHK 279 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443 L +G F LR+ + Sbjct: 280 L--------NGEGHFLCLLRKAYK 295 >gi|313126366|ref|YP_004036636.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM 11551] gi|312292731|gb|ADQ67191.1| NOL1/NOP2/sun family putative RNA methylase [Halogeometricum borinquense DSM 11551] Length = 312 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 103/265 (38%), Gaps = 17/265 (6%) Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 A + LK + + G Q+ +++P V D C Sbjct: 47 AENVGYEPTDWHPGILKLDERGPGTTWPYFHGWLHGQEEVSALPALALDPEPGEIVWDAC 106 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 AAPG KT QL + + D + RL LR N +RL + + DA +Y K Sbjct: 107 AAPGSKTTQLADLMDDTGVLIGNDNNLGRLSALRHNAERLGVSNLVVTNQDARNYSLKPF 166 Query: 307 ------------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 FD LVDAPCS GTIR++PD L + + A Q+ +L + + Sbjct: 167 GEDTDDSAAIDAFDKALVDAPCSCEGTIRKNPDALDRWTMNHVHSVAGIQKGILRRAVQA 226 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +PGG VV+S C+ +++E V+ VL + + + + E Sbjct: 227 TRPGGTVVYSTCTFAPEENEAVLDHVLGEEDCKLVPWDAPDNFETAPGVTEWEDEEYDPS 286 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALR 439 + ++ ++ + GFF L Sbjct: 287 V--ELAHRVYPHHNDTGGFFCAKLE 309 >gi|237843673|ref|XP_002371134.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii ME49] gi|211968798|gb|EEB03994.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii ME49] gi|221504886|gb|EEE30551.1| ribosomal RNA small subunit methyltransferase B, putative [Toxoplasma gondii VEG] Length = 396 Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 67/434 (15%), Positives = 130/434 (29%), Gaps = 92/434 (21%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 L + + ++ D++ + + + +++ +D + Sbjct: 35 PLDLFVRHYFKCHK--SINSADKLFITSHLYQIIKWKGLLDFL-----------TPPPAA 81 Query: 84 QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143 R+ I R Sbjct: 82 WSSRIRTY----------------------------------FISDRWKLHSTNQRLPPH 107 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPT 200 PE RLE G + + + + L V + E L + Sbjct: 108 LRCSFPEPLFARLEAALGTVKAIQVCNILNEDPPTFLRVNSNKITRERLYKFLVNKGVLV 167 Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + + LP F G + +QD ++ + VLD CA GG Sbjct: 168 EKCANSPFGLVLPQRQKLGDLPEFKSGFFDIQDEASQLVAFKLQVEPGQKVLDYCAGSGG 227 Query: 255 KTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLF 307 KT + ++ D + L + + L R + D + Sbjct: 228 KTLAFGPLLGNTGRLYLHDTREHMLLEAKKRLKRAGIPNYQLLFPHATPDHVFKKLRGQM 287 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNC 366 D VL D PC++TGT+RR+P++ W D + QR++ + ++KP G +++S Sbjct: 288 DWVLCDVPCTATGTLRRNPELKWKYSDDKLFDLVALQREIFASALIYMKPNKGRILYSTS 347 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ +++ V+ + + + P ++ Sbjct: 348 SILDEENVHQVKFFCQQHGLVLSEAPFHA----------------------------LPQ 379 Query: 427 SSGMDGFFAVALRR 440 S GMDGFF L + Sbjct: 380 SKGMDGFFCAILEK 393 >gi|86148632|ref|ZP_01066914.1| Sun/nucleolar protein family protein [Vibrio sp. MED222] gi|85833588|gb|EAQ51764.1| Sun/nucleolar protein family protein [Vibrio sp. MED222] Length = 473 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 20/265 (7%) Query: 187 ETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT--LNN 242 + +L V G + E + + G++++Q+AS+ +P + Sbjct: 57 KEKGWELEPVPWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADY 116 Query: 243 LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +VLD AAPG KT Q+ + + + A + + R++ L N++R + + D Sbjct: 117 QAVLDTAAAPGSKTTQIAALMNNHGVLVANEYAASRVKVLHANIERCGVRNAALSNFDGR 176 Query: 300 DY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS GTIR+ D + +V A Q+ L+ +KP Sbjct: 177 VFGGWLPEQFDAVLLDAPCSGEGTIRKDADAMKNWTYQSVVDIADTQKDLIESAFHALKP 236 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G++V+S C+L +++++V + + V L S + + + EG++ I P Sbjct: 237 NGVLVYSTCTLSTEENQQVCHHLKETFGDAVVFESLESLF---DNAKATTTEEGFLHIFP 293 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + + GFF +R+L Sbjct: 294 QVYDSE--------GFFVARIRKLA 310 >gi|312867633|ref|ZP_07727839.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis F0405] gi|311096696|gb|EFQ54934.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis F0405] Length = 434 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 102/260 (39%), Gaps = 20/260 (7%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + V + A G+ + Q+ +A I Q+ + Sbjct: 35 RTNPLKEAQKVFDDPIPNTPWGHYGKVSGKSIEHATGLVYSQEPAAQIVAQVAQPKPGMK 94 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299 VLDL AAPGGKT Q + + + + ++ K R + L N++R + D Sbjct: 95 VLDLAAAPGGKTTQLLSYLDNQGLLVSNEIHKGRSKILVENVERFGARNVLVTNESADRL 154 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +++DAPCS G R+ PD + D + + QR++L + PGG Sbjct: 155 AKVFSGFFDLIVLDAPCSGEGMFRKQPDAMDYWSIDYPRECSLLQREILEDAFKMLVPGG 214 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S C+ +++EEVV +L + + +E + + + ID R+ P + Sbjct: 215 SLVYSTCTWAPEENEEVVSWLLENYDLELETIEKINGMAEGIDHPETA------RMYPHL 268 Query: 420 LEKIDGVSSGMDGFFAVALR 439 + F R Sbjct: 269 FKGEGQ--------FVAKFR 280 >gi|257388869|ref|YP_003178642.1| RNA methylase, NOL1/NOP2/sun family [Halomicrobium mukohataei DSM 12286] gi|257171176|gb|ACV48935.1| RNA methylase, NOL1/NOP2/sun family [Halomicrobium mukohataei DSM 12286] Length = 305 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 15/237 (6%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 + P F G + Q+ +++PV++ G + D CAAPG KT+Q V A Sbjct: 71 ANWPYFH-GWIYGQEEVSAVPVRVLGPEPGERIWDACAAPGSKTSQIAARQGDDGVVVAT 129 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------FDAVLVDAPCSSTGTI 322 D + RL LR N ++L + + + DA ++ K +D LVD PCS GT+ Sbjct: 130 DSNLGRLSALRTNTEQLGITSVAVTHEDARNHSLKPFGDDDSAEYDRALVDVPCSCEGTV 189 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++PD L + + A Q+ +L + I KPGG VV+S C+ +++E V+ L Sbjct: 190 RKNPDTLDEWTLEHVEGIAGVQKGVLRRAIQTTKPGGTVVYSTCTFAPEENEAVLDYALE 249 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + + A + S + +R +I + GFF L Sbjct: 250 TEACRLVPFEIPLASTGGVTEWQGESYDDSVR----QAHRIYPHHNDTGGFFCAKLE 302 >gi|145350379|ref|XP_001419585.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579817|gb|ABO97878.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 359 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 37/362 (10%) Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 V + E A+ + + + V + + + +P + L YG Sbjct: 12 RAVVPSAEDARAMYGDGAADLRIAAREENVRWSSDDAIAVG-QKTALPRPLVDALIREYG 70 Query: 162 KERVLAISDACISPLYIDLTVKF-----DIETWAHKLNAVMLPTGGIRL----------- 205 +E LA A +P + + A L + T + Sbjct: 71 REEALAFGAAINAPGPVTCRANGALARGGADEVAAMLAREGIRTEKTKYGLAAPLAFVLP 130 Query: 206 --KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLI 260 I + G + V D + G +LD CA GGK A + Sbjct: 131 DGPPKNGGIFGCDVWRRGYFEVMDEGSQCIANAVGAREGERILDACAGNGGKTLAMAANM 190 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 ++ A D+ KRRL L+ N R + A + ++ D + FDA+LVDAPCSS G Sbjct: 191 NGHGEICAFDIDKRRLLHLKANAARARVDAL-VTTTESLDELASESFDAILVDAPCSSVG 249 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 +RR P + + D D + A Q ++L +KPGG +V++ CS+ ++++V + Sbjct: 250 ALRRTPSLRHSYD--DPRELAKVQAEILDGVARLLKPGGRLVYATCSVLSIENQDVAEAF 307 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 R + ++ SP +R G DGFF R Sbjct: 308 ERKHDDFA---------PWPFEDSVLTSPAVELR---SHERLFLPHVHGTDGFFIARFVR 355 Query: 441 LI 442 Sbjct: 356 RT 357 >gi|294658941|ref|XP_002770870.1| DEHA2F21384p [Debaryomyces hansenii CBS767] gi|202953499|emb|CAR66389.1| DEHA2F21384p [Debaryomyces hansenii] Length = 707 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 103/270 (38%), Gaps = 60/270 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +V D+CAAPG KTAQ++ + V A D Sbjct: 150 ISRQEAVSMIPPLLMDIKPHHAVFDMCAAPGSKTAQMVEALHADDDNKLATGFVLANDSD 209 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS GT+R+ Sbjct: 210 YKRSHMLVHQVKRLNSPNFMVVNHDAQLFPRIRLNNASEYLKFDRILCDVPCSGDGTMRK 269 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ ++ GG +V+S CSL ++E VV LR Sbjct: 270 NVNVWKDFTVGNALGLHSLQINILNRGLQLLRKGGRLVYSTCSLSPVENEAVVAAALRKW 329 Query: 385 PIPVELVPLNSA----------------------------------YWKSIDMAMALSPE 410 ++LV ++ + + + A S E Sbjct: 330 GNQIKLVNCDNELPGLVRRNGVSDWKVYGKDMQVREKGAEDVADTVFPPTQEEADTFSLE 389 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 IR+ P + GFF L + Sbjct: 390 NCIRVYPHLQ--------NTGGFFIAVLEK 411 >gi|145487526|ref|XP_001429768.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124396862|emb|CAK62370.1| unnamed protein product [Paramecium tetraurelia] Length = 383 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 74/438 (16%), Positives = 152/438 (34%), Gaps = 80/438 (18%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 +++ +R L Y ++ L ++ ++ +R D +L Sbjct: 14 IMTNFDVQRGPFDSFLREYYKNNK--TLGPSERSIISQTAFDLVRN----DLLLSHFTK- 66 Query: 74 SLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 L +S + ++ DY +++ + + + ++R Sbjct: 67 ---DVDRKCDLLSHISNYE-NDQNIPLQDYILIN--------------YKGIFDVAVQRC 108 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIET 188 + + + YG++R A + + + + E Sbjct: 109 KNTFYFR-------------LFQLVSDQYGQKRAYEFFMALNTKAPLTIRINPIKTTREK 155 Query: 189 WAHKLNAVML------PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 ++N + P G I KE ++ F EG++ +QD ++ I N Sbjct: 156 LMQEMNHLYFKKTLTSPYGLIISKENNVNLSDTDQFKEGLFEIQDEASQICALRVQCRPN 215 Query: 243 LSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 VLD CA GGKT ++++ R E L RL + + Sbjct: 216 DKVLDYCAGSGGKTLAFAHQMEGKGVIEINDTRSEALSKAKIRLRRAGIM----NYSFFT 271 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K +D +L+D PC+ GT+RR+PD + + Q+ + Q I ++K G++V Sbjct: 272 KKFKYDWILLDVPCTGLGTLRRNPDSKYRFSQGRLDDLIKLQQDIFDQAIRYLKQDGVIV 331 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS K +++ V+ + + V + + Sbjct: 332 YTTCSFLKDENQNQVKHFCKKYNLSVVD---------------------------NDYFQ 364 Query: 423 IDGVSSGMDGFFAVALRR 440 GMDGFF+++L++ Sbjct: 365 SLPEKGGMDGFFSISLKK 382 >gi|118586909|ref|ZP_01544342.1| tRNA/rRNA cytosine-C5-methylase [Oenococcus oeni ATCC BAA-1163] gi|118432636|gb|EAV39369.1| tRNA/rRNA cytosine-C5-methylase [Oenococcus oeni ATCC BAA-1163] Length = 458 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 120/303 (39%), Gaps = 20/303 (6%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P+ F + GKE ++ + L D+ ++ +P + Sbjct: 4 LPKEFIAKYRRLLGKEADDFLASFQMEADNGFRLNPLKDLRQFSSLKRQTPIPWNRENGR 63 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263 F GV + Q+ SA Q+ +LDL AAPGGK+ Q + + Sbjct: 64 YGKIF-GESTAFLSGVAYSQEPSAQFVAQVVDAQPGEKILDLAAAPGGKSTQIAADMNNQ 122 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGT 321 + A ++S R + L N++R + + D + FD +L+DAPCS G Sbjct: 123 GLLMANEISFSRAKILSENIERSGITNCIVTNHRPDELAEHFENYFDKILLDAPCSGEGM 182 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R+ P + +D + A Q+++L +S ++P G +++S C+ ++ E++V +L Sbjct: 183 FRKDPQAIKYWHSDYSSECANRQKEILKSVLSMLRPNGQLIYSTCTFAPEEDEQIVAWLL 242 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVA 437 + + L+ + + + R+ P+ ++ G F Sbjct: 243 DNY-SELSLLKIRKKDGIEDGRPQWANGNRELKNTARLWPNKIKGE--------GHFVAR 293 Query: 438 LRR 440 L + Sbjct: 294 LIK 296 >gi|255099659|ref|ZP_05328636.1| putative methylase [Clostridium difficile QCD-63q42] Length = 436 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 33/259 (12%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 LN + G + + P G +++Q+ SA + VLD+CAA Sbjct: 54 DLNQIPWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAA 113 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKL 306 PGGK+ + + + +++ R++ L NL+R I D+ Sbjct: 114 PGGKSTYILSKLNDTGLLVSNEINASRIKALGENLERFGARNCIITNTDSNSLRKTFNGY 173 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD V++DAPCS G R+ + +V+ Q++++ G +K GI+++S C Sbjct: 174 FDKVIIDAPCSGQGMFRKDEVAISDWSYAKVVECQSIQKEIIRDGYKMLKKDGILIYSTC 233 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + ++++E V+ + + P EL+ + R+ P ++ Sbjct: 234 TFSREENEHVINEFISEYP-HAELIEME-------------------RLWPHKIKGE--- 270 Query: 427 SSGMDGFFAVALRRLIQPK 445 G F +++L + + Sbjct: 271 -----GHFVAKIKKLEEEE 284 >gi|126698132|ref|YP_001087029.1| putative methylase [Clostridium difficile 630] gi|254974153|ref|ZP_05270625.1| putative methylase [Clostridium difficile QCD-66c26] gi|255091554|ref|ZP_05321032.1| putative methylase [Clostridium difficile CIP 107932] gi|255515971|ref|ZP_05383647.1| putative methylase [Clostridium difficile QCD-97b34] gi|255649062|ref|ZP_05395964.1| putative methylase [Clostridium difficile QCD-37x79] gi|260682253|ref|YP_003213538.1| putative methylase [Clostridium difficile CD196] gi|260685852|ref|YP_003216985.1| putative methylase [Clostridium difficile R20291] gi|306519175|ref|ZP_07405522.1| putative methylase [Clostridium difficile QCD-32g58] gi|115249569|emb|CAJ67386.1| putative RNA methyltransferase [Clostridium difficile] gi|260208416|emb|CBA60960.1| putative methylase [Clostridium difficile CD196] gi|260211868|emb|CBE02298.1| putative methylase [Clostridium difficile R20291] Length = 436 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 33/259 (12%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 LN + G + + P G +++Q+ SA + VLD+CAA Sbjct: 54 DLNQIPWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAA 113 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKL 306 PGGK+ + + + +++ R++ L NL+R I D+ Sbjct: 114 PGGKSTYILSKLNDTGLLVSNEINASRIKALGENLERFGARNCIITNTDSNSLRKTFNGY 173 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD V++DAPCS G R+ + +V+ Q++++ G +K GI+++S C Sbjct: 174 FDKVIIDAPCSGQGMFRKDEVAISDWSYAKVVECQSIQKEIIRDGYKMLKKDGILIYSTC 233 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + ++++E V+ + + P EL+ + R+ P ++ Sbjct: 234 TFSREENEHVINEFISEYP-HAELIEME-------------------RLWPHKIKGE--- 270 Query: 427 SSGMDGFFAVALRRLIQPK 445 G F +++L + + Sbjct: 271 -----GHFVAKIKKLEEEE 284 >gi|70606519|ref|YP_255389.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639] gi|68567167|gb|AAY80096.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639] Length = 334 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 127/341 (37%), Gaps = 15/341 (4%) Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 E K+ + + ++ ++ + E Sbjct: 1 MKEYIKKYDKLFSLSPSYQAVRLSNKYGFLDYMVERYIHMFDSLEDAESFMRSCTVPLEE 60 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 +I + + + + + + + + + K S+ + + G +++Q Sbjct: 61 SIRCNDLVTTCSTMEYRLEEKNFELEKVQWLPHGYRVIKKPNKPSLGATVEYLNGYYYIQ 120 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 ++ +P + +VLD+ AAPGGKT QL + + + A + S+RR L N+ Sbjct: 121 GLASMVPAYVLNPHEEDTVLDMAAAPGGKTTQLAQLMKNKGLIIATEKSRRRARSLISNI 180 Query: 284 DRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 +R+H +I DA + F +L+DAPCS G I + + D+ + Sbjct: 181 NRMHARNIILIRSDASTLSKTRIKFSKILLDAPCSGEGIIFKDTERRKKTSLSDLKNFSL 240 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAYWK 399 Q LL G + GI+V+S CS+ ++ E VV + I + P + + Sbjct: 241 TQMGLLTIGYDLLDKNGILVYSTCSIAPEEDELVVNYGIEELGFRAIKISGYPADKGISE 300 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + IR P G +GFF AL++ Sbjct: 301 FRGVKFSHDVNNCIRFYPH--------EHGTEGFFVCALQK 333 >gi|300711849|ref|YP_003737663.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3] gi|299125532|gb|ADJ15871.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3] Length = 302 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 104/265 (39%), Gaps = 15/265 (5%) Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 A + L+ + + G Q+ +S+P + Sbjct: 41 TKRALEAEDVGYRDRDWNPTVLELDTNKPGNTWPYFHGWIHGQEEVSSLPATVLSPDPGE 100 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD CAAPGGKTAQ+ + V A D + RL LR N +RL L + DA + Sbjct: 101 RVLDACAAPGGKTAQIAALMDDTGLVVANDNNLGRLSALRFNAERLGLTNVAVTRQDARN 160 Query: 301 YCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + K + FD VLVDAPCS G IR+ PD L + + Q+ +L + I + Sbjct: 161 FSLKPVGLDAFDRVLVDAPCSCEGIIRKRPDTLDEWSLSHVEGVSGVQKGILKRAIQATR 220 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG+VV+S C+ +++E V+ L V + +D ++ R Sbjct: 221 EGGVVVYSTCTFAPEENEAVLDHALEEEDCRVV------EFETPLDSRPGVTEWQGERYH 274 Query: 417 PD--MLEKIDGVSSGMDGFFAVALR 439 + + GFF L Sbjct: 275 ESVAKARRYYPHHNDTGGFFCAKLE 299 >gi|315180185|gb|ADT87099.1| Ribosomal RNA small subunit methyltransferase F (rRNA (cytosine-C(5)-)-methyltransferase rsmF) (16S rRNA m5C1407 methyltransferase) [Vibrio furnissii NCTC 11218] Length = 474 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 21/258 (8%) Query: 193 LNAVMLPTGGIRLK--ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV---LD 247 L AV G + E + + G++++Q+AS+ +PV + LD Sbjct: 63 LEAVPWCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPVSALFMDASERFDAVLD 122 Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--C 302 + AAPG KT Q+ + + + A + S R++ L N++R + + D + Sbjct: 123 MAAAPGSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGIRNTALSNFDGRVFGGW 182 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FDAVL+DAPCS GTIR+ PD + ++ A Q+ L+ +K GG++V Sbjct: 183 LPEQFDAVLIDAPCSGEGTIRKDPDAMKNWSKASVLSIADTQKDLIESAFQALKVGGVLV 242 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+L ++++ + V L+++ ++ D A ++ EG++ I P + + Sbjct: 243 YSTCTLSREEN-QQVCWHLKNTYGDAVSFERLDNLFEHADQA--ITEEGFLHIFPQVYDC 299 Query: 423 IDGVSSGMDGFFAVALRR 440 GFF +R+ Sbjct: 300 E--------GFFVARIRK 309 >gi|256071291|ref|XP_002571974.1| nucleolar protein nol1/nop2 [Schistosoma mansoni] gi|238657124|emb|CAZ28204.1| nucleolar protein nol1/nop2, putative [Schistosoma mansoni] Length = 434 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 14/265 (5%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNA----- 195 ++ +L + + KE V + + T+K A L Sbjct: 162 CSRYSYNQFLMVKLLDLFPKEIVEVLEANEVDRPVTIRTNTLKTRRRELAQALINRGVNL 221 Query: 196 ---VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 G+ + + + P + G + +Q AS+ +PV +LDLCAAP Sbjct: 222 DPLEPWSKVGLVVYSSQVPLGATPEYLAGHYILQGASSMLPVMALSPQLGERILDLCAAP 281 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FD 308 GGKT + + + + A +++ R + L N R+ + I + + FD Sbjct: 282 GGKTTYIAQLMKNTGTIFANEINPSRAKALLGNCHRMGVTNTVICTENGRKFPKIMSNFD 341 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VLVDAPCS TG I + P V T++ D+I K Q++LL+ I K GG VV+S CS+ Sbjct: 342 RVLVDAPCSGTGIIAKDPSVKTTKNNDEIQKCVELQKRLLVAAIDSCKVGGYVVYSTCSI 401 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPL 393 +++E VV LR + +E L Sbjct: 402 LVEENENVVNFALRRRKVRLEETKL 426 >gi|291522210|emb|CBK80503.1| tRNA and rRNA cytosine-C5-methylases [Coprococcus catus GD/7] Length = 467 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 123/314 (39%), Gaps = 32/314 (10%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAV----MLPT 200 PE F+ER++ G E + P + + + + V + Sbjct: 3 QFPEKFQERMQQMLGDEEYAEFLKSYDLPFHNGLRINTWKTKPQELLQRMGVDLKQVPWN 62 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 E + P + G++++Q+ASA +P +L +LD+CAAPGGK+ + Sbjct: 63 ETGFYLENKKQFSKHPYYQGGLYYIQEASAMLPAKLVNAQPGEKILDMCAAPGGKSTAIG 122 Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAP 315 + + D+SK R + L NL+ + ++ + FD VL+DAP Sbjct: 123 AALKGEGLLISNDISKSRAKALLRNLEGFGIINSIVVSEYPEKLSRYFPEFFDKVLIDAP 182 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G + P + + + Q ++L G V+PGG +++S C+ ++ E Sbjct: 183 CSGEGMFHKEPSMTESWLRMGPEEYHKLQMEILTYGAKMVRPGGKLIYSTCTFSPEEDEG 242 Query: 376 VVQKVLRSSPIP--VELVP---------LNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 + L+ P VE+ ++ + + D L+ R+ P LE Sbjct: 243 SIAWFLQEHPDFHLVEVDDDKDLCGCHCIDHGHPEWADGNPELTK--TRRLWPHHLEGE- 299 Query: 425 GVSSGMDGFFAVAL 438 G FA L Sbjct: 300 -------GHFAAVL 306 >gi|89898746|ref|YP_515856.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] gi|89332118|dbj|BAE81711.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 371 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 82/426 (19%), Positives = 139/426 (32%), Gaps = 82/426 (19%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 + + + R L +D+ + A + LR ++ ++ Sbjct: 19 TPIGEVNRVALYFKQHRSLGSKDRQWMSARIFAILRHRRLLETLI--------------- 63 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 LR D V AK ++ + + Sbjct: 64 ---LR------------DNQEVSPETLVAKVEEG-------------ALDDIEQYQDLPW 95 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 I + E L YG+ER ++ + + V + + P Sbjct: 96 PVRYSISDDLAECLIEDYGQERAKELAGFFLKEAPCAIRVNTRRTSVEDLRKRLQYPCEP 155 Query: 203 IRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + + + F G++ +QD S+ +LD CA GGK+ Sbjct: 156 GSVPGSLRFDKRYPLQHSAAFHRGLFEIQDESSQKVTLDIPVSKKDRILDFCAGAGGKSL 215 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 V D K LE+ + L R I E K F V+VDAPC+ Sbjct: 216 IFADRAHHVVLHDSRKDVLEEAKQRLRRAGARNFSIGEQYLR----KNSFSIVVVDAPCT 271 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 +G RRHP+ ++ + QRK+L + +VKPGG +V+ CSL +++E+ V Sbjct: 272 GSGVFRRHPEKKSQFSKKLLLTFSQVQRKILRDAVRYVKPGGKLVYITCSLLSEENEKQV 331 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 ++ + + + M ALSPEG DGFF+ Sbjct: 332 -AFMQ-----------SLGWEEERCMHTALSPEGG------------------DGFFSAR 361 Query: 438 LRRLIQ 443 R + Sbjct: 362 FVRKGR 367 >gi|260768468|ref|ZP_05877402.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii CIP 102972] gi|260616498|gb|EEX41683.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii CIP 102972] Length = 474 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 22/274 (8%) Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPV 234 I + + + + E + + G++++Q+AS+ +PV Sbjct: 47 ISVEAFLSRAKEKGWMLEAVPWCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPV 106 Query: 235 QLFGTLNNLSV---LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + LD+ AAPG KT Q+ + + + A + S R++ L N++R + Sbjct: 107 SALFMDASERFDAVLDMAAAPGSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGI 166 Query: 289 YAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + D + + FDAVL+DAPCS GTIR+ PD + ++ A Q+ Sbjct: 167 RNTALSNFDGRVFGGWLPEQFDAVLIDAPCSGEGTIRKDPDAMKNWSKASVLSIADTQKD 226 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 L+ +K GG++V+S C+L ++++ + V L+++ ++ D A Sbjct: 227 LIESAFQALKVGGVLVYSTCTLSREEN-QQVCWHLKNTYGDAVSFERLDNLFEHADQA-- 283 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ EG++ I P + + GFF +R+ Sbjct: 284 ITEEGFLHIFPQVYDCE--------GFFVARIRK 309 >gi|256850375|ref|ZP_05555803.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus MV-1A-US] gi|262046477|ref|ZP_06019439.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus MV-3A-US] gi|312978159|ref|ZP_07789903.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus CTV-05] gi|256712772|gb|EEU27765.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus MV-1A-US] gi|260573348|gb|EEX29906.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus MV-3A-US] gi|310894877|gb|EFQ43947.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus CTV-05] Length = 457 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 24/310 (7%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205 +P FK + E G ++ + A + +++L + Sbjct: 3 NLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSAYY 62 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E+ P + G + QD +A P + G VLDLCAAPGGK + + Sbjct: 63 GEVSG---EDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKITALGEQLKG 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTG 320 + A ++S R++ LR N++R + I P FD +LVDAPCS G Sbjct: 120 EGLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+++L + + ++PGG +++S C+ ++ E++V + Sbjct: 180 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL 239 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + D L+ +R P F Sbjct: 240 NKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTK--TLRFWPQDGIGEGQ--------FV 289 Query: 436 VALRRLIQPK 445 L+++ + + Sbjct: 290 AVLQKVGKAR 299 >gi|221484704|gb|EEE22998.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 396 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 67/434 (15%), Positives = 130/434 (29%), Gaps = 92/434 (21%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 L + + ++ D++ + + + +++ +D + Sbjct: 35 PLDLFVRHYFKCHK--SVNSADKLFITSHLYQIIKWKGLLDFL-----------TPPPAA 81 Query: 84 QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143 R+ I R Sbjct: 82 WSSRIRTY----------------------------------FISDRWKLHSTNQRLPPH 107 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLPT 200 PE RLE G + + + + L V + E L + Sbjct: 108 LRCSFPEPLFARLEAALGTVKAIQVCNILNEDPPTFLRVNSNKITRERLYKFLVNKGVLV 167 Query: 201 GGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 + + + LP F G + +QD ++ + VLD CA GG Sbjct: 168 EKCANSPFGLVLPQRQKLGDLPEFKSGFFDIQDEASQLVAFKLQVEPGQKVLDYCAGSGG 227 Query: 255 KTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAED----IIEMDAFDYCPKKLF 307 KT + ++ D + L + + L R + D + Sbjct: 228 KTLAFGPLLGNTGRLYLHDTREHMLLEAKKRLKRAGIPNYQLLFPHATPDHVFKKLRGQM 287 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNC 366 D VL D PC++TGT+RR+P++ W D + QR++ + ++KP G +++S Sbjct: 288 DWVLCDVPCTATGTLRRNPELKWKYSDDKLFDLVALQREIFASALIYMKPNKGRILYSTS 347 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ +++ V+ + + + P ++ Sbjct: 348 SILDEENVHQVKFFCQQHGLVLSEAPFHA----------------------------LPQ 379 Query: 427 SSGMDGFFAVALRR 440 S GMDGFF L + Sbjct: 380 SKGMDGFFCAILEK 393 >gi|295693043|ref|YP_003601653.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus crispatus ST1] gi|295031149|emb|CBL50628.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus ST1] Length = 457 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 125/310 (40%), Gaps = 24/310 (7%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205 +P FK + E G ++ + A + +++L + Sbjct: 3 NLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSAYY 62 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E+ P + G + QD +A P + G VLDLCAAPGGKT + + Sbjct: 63 GEVSG---EDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKTTALGEQLKG 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTG 320 + A ++S R++ LR N++R + I P FD +LVDAPCS G Sbjct: 120 EGLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+++L + + ++PGG +++S C+ ++ E++V + Sbjct: 180 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL 239 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + D L+ +R P F Sbjct: 240 NKEYGFTILDTGIQANKIDVGQPEWADGNPDLTK--TLRFWPQDGIGEGQ--------FV 289 Query: 436 VALRRLIQPK 445 L+++ + + Sbjct: 290 AVLQKVGKAR 299 >gi|256843268|ref|ZP_05548756.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus 125-2-CHN] gi|293380932|ref|ZP_06626966.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus 214-1] gi|256614688|gb|EEU19889.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus crispatus 125-2-CHN] gi|290922507|gb|EFD99475.1| NOL1/NOP2/sun family protein [Lactobacillus crispatus 214-1] Length = 457 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 125/310 (40%), Gaps = 24/310 (7%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-DIETWAHKLNAVMLPTGGIRL 205 +P FK + E G ++ + A + +++L + Sbjct: 3 NLPNEFKTKYEKLLGTKKAQELFAAMNEESKKAFRINTLKPTKVSYELTDSVPQINSAYY 62 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E+ P + G + QD +A P + G VLDLCAAPGGKT + + Sbjct: 63 GEVSG---EDPEWVSGSVYSQDPAAMFPAAISGVRPGERVLDLCAAPGGKTTALGEQLKG 119 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTG 320 + A ++S R++ LR N++R + I P FD +LVDAPCS G Sbjct: 120 EGLLVANEISATRVKALRENIERWGISNALITNESPEKLVPIFSEFFDVILVDAPCSGEG 179 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+++L + + ++PGG +++S C+ ++ E++V + Sbjct: 180 MFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTFAPEEDEQIVSWL 239 Query: 381 LRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++ ++ + D L+ +R P F Sbjct: 240 NKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTK--TLRFWPQDGIGEGQ--------FV 289 Query: 436 VALRRLIQPK 445 L+++ + + Sbjct: 290 AVLQKVGKAR 299 >gi|167751849|ref|ZP_02423976.1| hypothetical protein ALIPUT_00091 [Alistipes putredinis DSM 17216] gi|167660090|gb|EDS04220.1| hypothetical protein ALIPUT_00091 [Alistipes putredinis DSM 17216] Length = 442 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 15/291 (5%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 G E A+ +A P + + AV G L E P S P Sbjct: 1 MAELGPEEGRALCEALEGPAPTSVRLHPQRPCRWSGAEAVPWSPAGRYLTERP-SFTLDP 59 Query: 217 GFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDV 271 F G ++VQ+AS+ + + +LDLCAAPGGKT S V A +V Sbjct: 60 AFHAGAYYVQEASSQFLAHVLAGEEVAGKRILDLCAAPGGKTTLYASLAGSDGLVVANEV 119 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 +++R L N+ + L + + + FD V VDAPCS G R+ P+ Sbjct: 120 NRQRAAVLADNVRKWGLGNVAVTVNEPAQIAVLEGWFDIVAVDAPCSGEGMFRKIPEARD 179 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +++ A Q ++L + ++PGG++++S C+ ++ ++E ++ +L + + Sbjct: 180 EWSENNVKICAVRQAEILREAWKTLRPGGLLIYSTCTFNRLENEGSLEGLLAEAGEEIVE 239 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P R P GFFA R++ Sbjct: 240 STAFDCPPAWGVVCGRVGPFRTFRFYPHRTRGE--------GFFAAVARKV 282 >gi|327459833|gb|EGF06173.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1057] Length = 434 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ Sbjct: 1 MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTNWSFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPTKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVVVTNESAERLVQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|296449347|ref|ZP_06891129.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP08] gi|296880719|ref|ZP_06904671.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP07] gi|296261817|gb|EFH08630.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP08] gi|296428292|gb|EFH14187.1| NOL1/NOP2/sun family protein [Clostridium difficile NAP07] Length = 436 Score = 126 bits (316), Expect = 7e-27, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 105/259 (40%), Gaps = 33/259 (12%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 LN + G + + P G +++Q+ SA + VLD+CAA Sbjct: 54 DLNQISWAEEGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAA 113 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKL 306 PGGK+ + + + +++ R++ L NL+R I D+ Sbjct: 114 PGGKSTYILSKLNDTGLLVSNEINVSRIKALGENLERFGARNCIITNTDSNSLRKTFNGY 173 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD V++DAPCS G R+ + +V+ Q++++ G +K GI+++S C Sbjct: 174 FDKVIIDAPCSGQGMFRKDEVAISDWSHAKVVECQSIQKEIIRDGYKMLKKDGILIYSTC 233 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + ++++E V+ + + P EL+ + R+ P ++ Sbjct: 234 TFSREENEHVINEFISEYP-HAELIEME-------------------RLWPHKIKGE--- 270 Query: 427 SSGMDGFFAVALRRLIQPK 445 G F +++L + + Sbjct: 271 -----GHFVAKIKKLEEEE 284 >gi|324990875|gb|EGC22810.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK353] Length = 434 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGAEAADFFTTFDEEPISAFRSNPLKEGQQNFSDAIPHSDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKRMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E+VV + Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLDKDGRLVYSTCTWAPEENEDVVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|291279365|ref|YP_003496200.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family [Deferribacter desulfuricans SSM1] gi|290754067|dbj|BAI80444.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Deferribacter desulfuricans SSM1] Length = 456 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 15/239 (6%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 + F G ++Q+ S+ +PV+ ++ +LD+ +APGGKT + + Sbjct: 85 RLSDTISFFTGGIYIQNPSSLLPVKFLIENIDVDEPVILDMASAPGGKTTALSEFLDRRG 144 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--DYCPKKLFDAVLVDAPCSSTGTI 322 + A + SK RL+ L N+++ Y + D ++FDAVL+DAPCS+ I Sbjct: 145 LIVANEPSKSRLKDLNFNIEKNFAYNVATVSYDGRVLHKYLSEVFDAVLLDAPCSNENKI 204 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 VL + + A QR+L+ ++ GGI+++S C+ +++E++V+ +L Sbjct: 205 FHDNAVLNNWSETLVERLAKLQRELIESACFTLRKGGILIYSTCTFSIEENEQIVEYLLS 264 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 VEL+ LN + + + +RI P G DGFF R+ Sbjct: 265 EY--DVELIDLNKGDFDYGLSGNSNIDKKVVRILPHSGRYP-----GFDGFFVAGFRKK 316 >gi|139439007|ref|ZP_01772467.1| Hypothetical protein COLAER_01473 [Collinsella aerofaciens ATCC 25986] gi|133775718|gb|EBA39538.1| Hypothetical protein COLAER_01473 [Collinsella aerofaciens ATCC 25986] Length = 367 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 71/256 (27%), Positives = 116/256 (45%), Gaps = 32/256 (12%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + L + +G ++Q S+ +P + G +LD+CAAPGGKT Q+ S A +T Sbjct: 116 DLWDLDIYRDGKIYLQSLSSMMPPLVLGAQAGEDILDMCAAPGGKTTQIAALTQSQAHLT 175 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HP 326 A ++S R EKL NL R ++ +DA + FD +L+DAPC+ TGT+ + Sbjct: 176 ACEMSIPRAEKLESNLHRQGAKNVPVMRIDARELDEFFRFDRILLDAPCTGTGTVISGNE 235 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 L + K A QR LL + + +KPGG +V+S CS+ Q++E+ +Q+ L + Sbjct: 236 KSLRGLTEQLLGKCARSQRALLDRAMGALKPGGTLVYSTCSIMPQENEDALQEALDKH-M 294 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID---------------------- 424 EL+PL+ +S + E P + Sbjct: 295 DCELIPLDGTPSESEARRAQDAGEE-----PHIECNALTEAIAAGHVSAIANGMPGTLTI 349 Query: 425 GVSSGMDGFFAVALRR 440 S +GF+ +R+ Sbjct: 350 PPSRDFEGFYIALIRK 365 >gi|171779499|ref|ZP_02920463.1| hypothetical protein STRINF_01344 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282116|gb|EDT47547.1| hypothetical protein STRINF_01344 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 436 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 26/252 (10%) Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + G+ + Q+ +A + Q+ ++ VLDL AAPGGK+ + Sbjct: 55 WGHYGKVSGKSAEHVSGLVYSQEPAAQMVAQVAAPGEHMRVLDLAAAPGGKSTHLLSYMN 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSST 319 + + + ++S +R + L N++R + D K+ FD ++ D PCS Sbjct: 115 NTGVLVSNEISNKRSKILVENVERFGAKNVVVTNESSDRLAKVFKEYFDLIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P + A Q+++L + + + PGG +V+S C+ +++E VV Sbjct: 175 GMFRKEPQATQYWHEGYPAECASLQKEILEEAMKMLAPGGTLVYSTCTWSPEENEGVVNW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL- 438 +L +EL+P+ MA + R+ P + F L Sbjct: 235 LLSEY-DYLELLPIEKIN----GMAEGIDMPEVARMYPHRFKGEGQ--------FVAKLH 281 Query: 439 ------RRLIQP 444 R ++P Sbjct: 282 DTREPAHRKVKP 293 >gi|160939071|ref|ZP_02086422.1| hypothetical protein CLOBOL_03965 [Clostridium bolteae ATCC BAA-613] gi|158438034|gb|EDP15794.1| hypothetical protein CLOBOL_03965 [Clostridium bolteae ATCC BAA-613] Length = 393 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 102/253 (40%), Gaps = 16/253 (6%) Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 A L P + G++++Q+ SA P + + VLDLCAAPG Sbjct: 68 WADNGFYYDGTLDGEVLRPSKHPAYYAGLYYLQEPSAMTPAAMLPVVPGDRVLDLCAAPG 127 Query: 254 GKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFD 308 GK+ + + + + D+S R L NL+ + + FD Sbjct: 128 GKSTELASKLKGRGMLVSNDISYSRARALLKNLELAGAANICVTSEAPEKLAGVWPEFFD 187 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +LVDAPCS G RR D++ + QR++L Q + ++PGG +++S C+ Sbjct: 188 KILVDAPCSGEGMFRRDEDMVKDWNEKGPEYYVPIQRQILSQAAAMLRPGGYMLYSTCTF 247 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 ++ E V VL P ++L L+ L G +R+ P L+ Sbjct: 248 SVEEDEGNVAYVLEEFP-QMQLCCLDLDKVPGACGGFGLP--GCMRLFPHRLKGE----- 299 Query: 429 GMDGFFAVALRRL 441 G F +R+ Sbjct: 300 ---GHFLALMRKK 309 >gi|23199998|ref|NP_683759.1| putative methyltransferase NSUN5 isoform 1 [Homo sapiens] gi|21552754|gb|AAM62310.1|AF412028_1 Williams-Beuren syndrome critical region protein 20 copy A [Homo sapiens] gi|14165561|gb|AAH08084.1| NOL1/NOP2/Sun domain family, member 5 [Homo sapiens] gi|37674386|gb|AAQ96839.1| unknown [Homo sapiens] gi|119590101|gb|EAW69695.1| hCG39703, isoform CRA_d [Homo sapiens] gi|123990710|gb|ABM83920.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct] gi|123999331|gb|ABM87241.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct] gi|307684594|dbj|BAJ20337.1| NOP2/Sun domain family, member 5 [synthetic construct] Length = 466 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 154/409 (37%), Gaps = 29/409 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 A W ++ E +R +P+ GFF + R+ P Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVP 428 >gi|197301683|ref|ZP_03166753.1| hypothetical protein RUMLAC_00409 [Ruminococcus lactaris ATCC 29176] gi|197299123|gb|EDY33653.1| hypothetical protein RUMLAC_00409 [Ruminococcus lactaris ATCC 29176] Length = 470 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 17/270 (6%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 ++V+ ++ L V G P + G++++Q+ SA P Sbjct: 51 ISVEDFLKIAPWPLEPVPWIENGFYYDGDHIQPSKHPYYFAGLYYLQEPSAMTPASRLPV 110 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294 VLD+CAAPGGK + + + A D+S R + L NL+ + + Sbjct: 111 EPGDRVLDVCAAPGGKATELGAKLQGTGVLAANDLSSSRAKGLLKNLELFGIGNVLVLSE 170 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E + FD +L+DAPCS G R+ ++ + + Q+ ++ Q Sbjct: 171 EPGKLVSYFEGYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGPSFFSKIQKSIITQAAQM 230 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPE 410 ++PGG++++S C+ +++E+ ++ +L+ P +E + + Sbjct: 231 LRPGGMLLYSTCTFSPEENEQTIEYLLQEYPEFQICEMEGYEGFVNGMPQVTENRNDELK 290 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +RI P ++ G F L++ Sbjct: 291 KTVRIFPHRMKGE--------GHFLALLQK 312 >gi|127512512|ref|YP_001093709.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella loihica PV-4] gi|167012768|sp|A3QDA2|RSMF_SHELP RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|126637807|gb|ABO23450.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella loihica PV-4] Length = 486 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 115/256 (44%), Gaps = 21/256 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-----DLCAA 251 G + + + +G++++Q+AS+ +P + D+ +A Sbjct: 65 WCEDGFWVKVDDSVQLGNTVEHIQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASA 124 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KL 306 PG KT Q ++ + + A + S R++ L N+ R+ + DA + + Sbjct: 125 PGSKTTQLAAMMNNQGLLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVFGKYLFES 184 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FDA+L+DAPC GT+R+ PD L D +I A QR L+ +KPGG +V+S C Sbjct: 185 FDAILLDAPCGGEGTVRKDPDALKHWDESEIEAIASVQRDLIESAFLALKPGGSLVYSTC 244 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 +L+++++++V + + V+ L + A + EG++ + P + + Sbjct: 245 TLNRRENQDVCLHLKATYGDAVQFESLAGLFP---GAEKASTSEGFLHVWPQIFDSE--- 298 Query: 427 SSGMDGFFAVALRRLI 442 GFF L ++ Sbjct: 299 -----GFFIAKLTKIA 309 >gi|221123364|ref|XP_002166177.1| PREDICTED: similar to tRNA (cytosine-5-)-methyltransferase NSUN2 [Hydra magnipapillata] Length = 710 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 108/285 (37%), Gaps = 68/285 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV----------TA 268 G Q+A + IP L + VLD+CAAPG KTAQ+I + A Sbjct: 147 ECGAITRQEAVSMIPPMLLDIKPHHLVLDMCAAPGSKTAQIIELMHENQHEALPTGALIA 206 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCS 317 D +R L RL+ I DA + FD VL D PCS Sbjct: 207 NDADHKRCYMLTHQAKRLNTPCVIITNHDASIFPKLILKNESGENEALSFDRVLCDVPCS 266 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 GT+R++P + + Q ++L++G+ +K GG +V+S CS + ++E V+ Sbjct: 267 GDGTLRKNPLIWSKWTPHMGIALHQLQIRILIRGLEMLKIGGRLVYSTCSFNPIENEAVL 326 Query: 378 QKVLRSSPIPVELVPLNSA---------------------------------------YW 398 VL S V+LV ++ + Sbjct: 327 SHVLLQSKNAVQLVDCSNEIPDLKRKPGLLNWKVFNKQGMELKFFEETGKPSLIKPSMFP 386 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 SI+ A +++ + +RI P + + GFF L + + Sbjct: 387 PSIEEAKSINLQFCLRIYPHLQD--------TGGFFVAVLEKKAE 423 >gi|324993131|gb|EGC25051.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK405] Length = 434 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 111/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E +A+ G Sbjct: 1 MNFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQDFSDAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KMSGKSAEHVTG----LVYSQEPAAQMVAQIAAPTKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESADRLAQVFSGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTLDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELTDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|295839959|ref|ZP_06826892.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827723|gb|EFG65557.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 296 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 18/228 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L ++ + RD L +V TLR D Sbjct: 28 PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 87 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 AV+ + L + +L + Q+L + +A V VE A+ + ++ V Sbjct: 88 AVIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 146 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169 N++LRR++R ++ + ++ + P W L + G R + + Sbjct: 147 NAVLRRIARNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVAALWDSLGGPRGGIEDLL 206 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 A + L + A L+A+ + P ++ G Sbjct: 207 TADNERPEVTLVARPGRTDAAALLDALGEERALPG-RWSPYAVRLTEG 253 >gi|58337462|ref|YP_194047.1| nucleolar protein [Lactobacillus acidophilus NCFM] gi|58254779|gb|AAV43016.1| putative nucleolar protein [Lactobacillus acidophilus NCFM] Length = 461 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 119/302 (39%), Gaps = 16/302 (5%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P FK + +N G E+ A+ A V ++ + P I Sbjct: 3 NLPNEFKTKYQNLLGIEKANALFSAMNEASKKAFRVNTLKDSNEKVSYKLNNPVPEIDHA 62 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSG 263 E P + G+ + QD +A P + VLDLCAAPGGKT + + + Sbjct: 63 YYGEINGEDPEWVSGIVYSQDPAAMFPAAISKVKPGAKVLDLCAAPGGKTTALAEKLQNE 122 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 + A ++S R + LR NL+R + I P FD +LVDAPCS G Sbjct: 123 GVLVANEISNVRAKALRENLERWGVTNALITNESPEKLSPVFPAFFDVILVDAPCSGEGM 182 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++P+ + D ++ Q+ +L + I +KPGG +++S C+ ++ EE+V ++ Sbjct: 183 FRKNPEAIDYWSQDYVLTCQTRQKDILNEAIKMLKPGGSLIYSTCTFSPEEDEEIVSWLV 242 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +N A +R P +A L Sbjct: 243 NDHDFSILDPHINDPRISLGHPEWADGNADLTKPLRFWPQDGIGEGQ--------YAAIL 294 Query: 439 RR 440 ++ Sbjct: 295 QK 296 >gi|167519975|ref|XP_001744327.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777413|gb|EDQ91030.1| predicted protein [Monosiga brevicollis MX1] Length = 513 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 70/278 (25%), Positives = 106/278 (38%), Gaps = 55/278 (19%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---------SGAKVTAL 269 +G Q+A + IP L N VLD+CAAPG KTAQ+I V A Sbjct: 30 EQGNISRQEAVSMIPPLLLDVKPNQRVLDMCAAPGSKTAQIIEGVSATDETVPRGLVVAN 89 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVLVDAPC 316 D +R L RL ++ DA + K FD VL D PC Sbjct: 90 DADSKRCYMLVHQSKRLQSPVFMVVNQDASIFPALFLDSKGGNSRRRKLKFDRVLADVPC 149 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GT+R++P + + D Q ++L +GI ++ GG++V+S CSL+ ++E V Sbjct: 150 SGDGTMRKNPGIWRKWNPFDATGLHPLQYRILRRGIQLLEDGGLIVYSTCSLNPIENEAV 209 Query: 377 VQKVLRSSPIPVELVPLNSAYW---------------------------------KSIDM 403 V + LR VELV ++ + D Sbjct: 210 VAEALRQHEGLVELVDVSDQLPGLVRDPGMTSWKLMDRDCNWYSSTSEMRPDLRKRFPDS 269 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E + + ++ + GFF LR+ Sbjct: 270 MNPPTAEEAAKFHLERCLRLLPHAQDTGGFFVAVLRKK 307 >gi|21552756|gb|AAM62311.1|AF412029_1 Williams-Beuren syndrome critical region protein 20 [Mus musculus] Length = 465 Score = 126 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 74/405 (18%), Positives = 150/405 (37%), Gaps = 29/405 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + ++ R +P + + ++ + Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGHAYQVPRFVRVNTLKTRPEDAID 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ + + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ + + K+ A D +RL + + Sbjct: 212 DKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLV 271 Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G + R T + + Sbjct: 272 ARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L + F ++ +V+S CSL ++++E+VVQ+ L+ + L P+ Sbjct: 332 QALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W ++ E +R +P+ GFF R Sbjct: 389 T-WPHRGLSTFPGSEHCLRASPETTL--------TGGFFIAVFER 424 >gi|307206815|gb|EFN84713.1| tRNA (cytosine-5-)-methyltransferase CG6133 [Harpegnathos saltator] Length = 745 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 72/409 (17%), Positives = 130/409 (31%), Gaps = 71/409 (17%) Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 Y D+ + + + +N++ + ++ +++ + Sbjct: 34 YPDIIRENKDFENYYKTQEIVLEDKWDAFINTMRTNLPVAFRITGSKVEAKALLEIIKSD 93 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 + ++ I ++ F E A +L + + Sbjct: 94 FFKKILNTNLNDDSENSSNEIEPILHSLPFYPEKLAWQLQLTRKDIRRSEAYFRLHNFL- 152 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------- 264 + G Q+ + +P + + VLD+CAAPG KTAQLI Sbjct: 153 IAETDSGNISRQEVVSMVPPLVLDVRPSHKVLDMCAAPGSKTAQLIEMIHADEDNIVPEG 212 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVD 313 V A DV R KL RL+ I D+ FD +L D Sbjct: 213 FVIANDVDNNRCYKLVHQAKRLNSPNILITNHDSSIMPNFTITKPDGTKDILKFDRILAD 272 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS GT+R++PD+ + Q +++ +G+ + GG +V+S CSL+ ++ Sbjct: 273 VPCSGDGTMRKNPDIWCKWSPANGSNLHGIQYRIVKRGLELLTIGGRMVYSTCSLNPIEN 332 Query: 374 EEVVQKVLRSSPIPVELVPL---------------------------------------- 393 E V+ ++L + V+LV Sbjct: 333 EAVLHRILLETGDSVQLVNCRDLVPGLVCDPGVTHWKPASKDLQHYNAWEEVPEQWQTQI 392 Query: 394 -NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A E +RI P GFF L ++ Sbjct: 393 RPKMFPPPANEAFKFHLERCMRILPHHQ--------NTGGFFVAVLEKV 433 >gi|210615571|ref|ZP_03290669.1| hypothetical protein CLONEX_02887 [Clostridium nexile DSM 1787] gi|210150238|gb|EEA81247.1| hypothetical protein CLONEX_02887 [Clostridium nexile DSM 1787] Length = 460 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 19/259 (7%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 ++ V G P + G++++Q+ SA P VLD+CAA Sbjct: 53 EIQPVPWIENGFYYDGEHVQPAKHPYYFAGLFYLQEPSAMTPANRLPIEPGDKVLDVCAA 112 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKL 306 PGGK + + + A D+S R + L N++ + + E + + Sbjct: 113 PGGKATELGAKLCGEGVLVANDISNSRAKGLLKNIEVFGIGNVLVLSEEPGKIEEYFTEY 172 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS G R+ ++ + A QR ++ Q +KPGG++++S C Sbjct: 173 FDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFAKIQRSIVTQAARMLKPGGMMLYSTC 232 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-----MALSPEGWIRITPDMLE 421 + D +++E ++ + + P E+ + + M + E +RI P Sbjct: 233 TFDPEENEGTIEYLRQQYP-EFEIKEIRPYEGFAKGMPQVTESKEPAFEKTVRIWP---- 287 Query: 422 KIDGVSSGMDGFFAVALRR 440 G +G + L++ Sbjct: 288 ---YKMHG-EGHYLALLQK 302 >gi|198431505|ref|XP_002123666.1| PREDICTED: similar to predicted protein [Ciona intestinalis] Length = 693 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 125/319 (39%), Gaps = 28/319 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLP 199 ++ + + + ++A +A I + A L + + Sbjct: 235 CTYYSYNDFLLSKFMDMFPLTELIAFLEANEVNRPITIRTNTLKTKRRDLAQALISRGVN 294 Query: 200 TGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + P + G + +Q AS+ +PV VLD+CAA Sbjct: 295 LDPLAKWTKVGLVVYESPVPIGATPEYLAGHYMIQGASSFVPVMALAPQPGERVLDMCAA 354 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LF 307 PGGKT + + + + D++K RL+ + N+ R+ + I DA + F Sbjct: 355 PGGKTTYIAQLMKNSGFIFVNDINKARLKAVVGNMHRMGVSNSVISNYDARSFPTIMGNF 414 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVF 363 VL+DAPCS TG I + P V ++D DI K + Q++L+L I GG +V+ Sbjct: 415 SRVLLDAPCSGTGVISKDPSVKTSKDDSDITKCSHLQKELILAAIDSCNAQAQNGGYIVY 474 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LE 421 CS+ +++EEVV L+ + + L R P + Sbjct: 475 CTCSVMVEENEEVVNYALKKRNVKLVQTGLEFGV-------EGFCKYRQYRFHPSLKQTR 527 Query: 422 KIDGVSSGMDGFFAVALRR 440 + S MDGFF ++ Sbjct: 528 RFYPHSHNMDGFFVAKFKK 546 >gi|288905351|ref|YP_003430573.1| RNA methylase, NOL1/NOP2/sun family [Streptococcus gallolyticus UCN34] gi|306831431|ref|ZP_07464589.1| NOL1/NOP2/sun family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978338|ref|YP_004288054.1| NOL1/NOP2/sun family putative RNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732077|emb|CBI13642.1| putative RNA methylase, NOL1/NOP2/sun family [Streptococcus gallolyticus UCN34] gi|304426216|gb|EFM29330.1| NOL1/NOP2/sun family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178266|emb|CBZ48310.1| NOL1/NOP2/sun family putative RNA methylase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 436 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 26/252 (10%) Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + P G+ + Q+ +A + Q+ N+ VLDL AAPGGK+ + Sbjct: 55 WGHYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPQENMRVLDLAAAPGGKSTHLLSYMN 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSST 319 + + + ++S +R + L N++R + + K FD ++ D PCS Sbjct: 115 NTGVLVSNEISSKRSKVLVENIERFGARNVVVTNESSQKLAKVFKYYFDLIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P D + A Q+++L + + + GG +V+S C+ +++E VV+ Sbjct: 175 GMFRKDPAATQYWHEDYPAECATLQKEILEEAMKMLAIGGTLVYSTCTWSPEENEGVVKW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L +ELV + + + R+ P + F LR Sbjct: 235 LLDKY-DYLELVDIEKINGMVEGIDLPQVA----RMYPHHFKGEGQ--------FVAKLR 281 Query: 440 -------RLIQP 444 R ++P Sbjct: 282 DTRTAETRSVKP 293 >gi|317473624|ref|ZP_07932913.1| NOL1/NOP2/sun family protein [Anaerostipes sp. 3_2_56FAA] gi|316898914|gb|EFV20939.1| NOL1/NOP2/sun family protein [Anaerostipes sp. 3_2_56FAA] Length = 422 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 104/243 (42%), Gaps = 19/243 (7%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 P + G++++Q+ SA P VLDLCAAPGGK+ + + + + Sbjct: 41 PAKHPFYHAGLYYIQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKSTELGAKLRGEGILVS 100 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHP 326 D+S R + L NL+ + I+ + + P + FD VLVDAPCS G R+ Sbjct: 101 NDISITRTKALLKNLEMFGISNSVIVSEEPKNLVPVFYEYFDKVLVDAPCSGEGMFRKGS 160 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + I QR+++L + +KPGG +++S C+ ++ E++++ +L P Sbjct: 161 SEIKNWAEYGIEPYVKIQREIILDAVKMLKPGGYLLYSTCTFSPEEDEQLIEYLLEQEPG 220 Query: 387 PVELVPLNSAYWKSIDMAMAL-----SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L L A + IR+ P ++ G F L++ Sbjct: 221 -LSLADLPDCEGFDRGHAEWTVSGLQDVKKCIRLWPHRIKGE--------GHFLALLKKD 271 Query: 442 IQP 444 P Sbjct: 272 GSP 274 >gi|325687890|gb|EGD29910.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK72] Length = 434 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MNFPKGFKEK-YEQILGAEAAEFFATFDEEPISAFRSNPLKEGQQNFSHAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKEMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ D D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQQDATQYWTPDYPAQCAQLQRQILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|324995566|gb|EGC27478.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK678] Length = 434 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MNFPKGFKEK-YEQILGAEAAEFFATFDEEPISAFRSNPLKEGQQNFSHAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKEMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ D D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQQDATQYWTPDYPAQCAQLQRQILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|268316267|ref|YP_003289986.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252] gi|262333801|gb|ACY47598.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252] Length = 321 Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 132/313 (42%), Gaps = 21/313 (6%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIR 204 +PE F RL +R+ + A P V D + L A + + Sbjct: 5 MPEAFLARLRRLVPPDRLPVVEAAFQEPRITAFRVNTLKADRDAVLAALEAEGIQPRPVA 64 Query: 205 LK--------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 + +++ + +VQD ++ +P + + VLDLCAAPG KT Sbjct: 65 WYADAFQVPPKARAALLESRPYHARWIYVQDLASMLPPLVLAPEPDARVLDLCAAPGSKT 124 Query: 257 ---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVL 311 A L+ ++ A++V + R +L+ N+ + D + FD VL Sbjct: 125 LQLACLMQGRGEIAAVEVVRPRFYRLKANVQAYGAPNVRLYLQDGTRVGRYRPESFDYVL 184 Query: 312 VDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 VDAPCSS G PD I + A Q +LL+ + ++PGG++V++ C++ Sbjct: 185 VDAPCSSEGRFHLSDPDTFAYWSPRKIREMARKQYRLLVSAVQSLRPGGVLVYATCTMAP 244 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM-LEKIDGVSSG 429 +++E V+ ++LR+ + + PL+ + L PD+ + ++ Sbjct: 245 EENEAVLDRLLRTFDGVLTVEPLDLPVSNQLP---GLESWEGRSFHPDLRHARRILPTTE 301 Query: 430 MDGFFAVALRRLI 442 M+GFF LR+ Sbjct: 302 MEGFFLCRLRKRA 314 >gi|229496645|ref|ZP_04390359.1| NOL1/NOP2/sun family protein [Porphyromonas endodontalis ATCC 35406] gi|229316542|gb|EEN82461.1| NOL1/NOP2/sun family protein [Porphyromonas endodontalis ATCC 35406] Length = 479 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 24/312 (7%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200 I +P F ++E + +E +S + + L + ++ P+ Sbjct: 1 MEDLIPPLPCDFVHQIEQDFPQEVATLLSALDHTEPVVSLRLNIRKCARYKASPSLAYPS 60 Query: 201 GGIRLKELPESIVSLPGFAEG------VWWVQDASASIPVQLFG--TLNNLSVLDLCAAP 252 I + + P FA +++VQ+A++ QL + VLDLCAAP Sbjct: 61 TPIPWCQEGYRLEGRPFFAHDPLWHAGMYYVQEAASMALAQLAPLIPKRPIEVLDLCAAP 120 Query: 253 GGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFD 308 GGK+ ++ + + A + +R + LR NL + + FD Sbjct: 121 GGKSTLLLNILSENSTLVANEPIPKRAQILRENLMKWGYPNTIVTNNYPDQLAATAAKFD 180 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 ++VDAPCS G R+ P+ + + A QR++L + ++PGG++V+ C+ Sbjct: 181 MIVVDAPCSGEGLFRKTPEARLEWSLQSVNECALRQREILDAAWTMLRPGGMLVYCTCTF 240 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 ++ + EE V+ +LR + W I+ + P M Sbjct: 241 NRHEDEEQVEYLLREYNASLIAAITPPEEWHWIEGKGGV----GWHFLPGMTMGE----- 291 Query: 429 GMDGFFAVALRR 440 GF+ VA + Sbjct: 292 ---GFYFVAFYK 300 >gi|116491124|ref|YP_810668.1| tRNA and rRNA cytosine-C5-methylase [Oenococcus oeni PSU-1] gi|116091849|gb|ABJ57003.1| tRNA and rRNA cytosine-C5-methylase [Oenococcus oeni PSU-1] Length = 458 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 113/298 (37%), Gaps = 22/298 (7%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 ++ L +A L + + G K ES Sbjct: 12 YRRLLGKEADDFLASFQMEADNGFHLNPLKDLRQFASLKRQAPIPWNRENGRYGKIFGES 71 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + F GV + Q+ SA ++ +LDL AAPGGK+ Q + + + A Sbjct: 72 V----AFLSGVAYSQEPSAQFVARVVDAQPGEKILDLAAAPGGKSTQIAADMNNQGLLIA 127 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 ++S R + L N++R + + D + FD +L+DAPCS G R+ P Sbjct: 128 NEISFSRAKILSENIERSGITNCIVTNHRPDELAEHFENYFDKILLDAPCSGEGMFRKDP 187 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +D + A Q+++L +S ++P G +++S C+ ++ E++V +L + Sbjct: 188 QAIKYWHSDYSSECANRQKEILKSVLSMLRPNGQLIYSTCTFAPEEDEQIVAWLLDNY-S 246 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ + + R+ P+ ++ G F L + Sbjct: 247 ELSLLKIRKKDGIEDGRPQWADGNRELKNTARLWPNKIKGE--------GHFVARLIK 296 >gi|213418736|ref|ZP_03351802.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 197 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 11/203 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKERLENFYGKERVLAIS-DACISPL 176 L+N +LR+ R++ LL A + P W +RL+N Y + I + P+ Sbjct: 115 KGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQWQRIIEANNQRPPM 174 Query: 177 YIDLT-VKFDIETWAHKLNAVML 198 ++ + + W L + Sbjct: 175 WLRVNRTHHTRDGWLGLLEDAGM 197 >gi|296192252|ref|XP_002743979.1| PREDICTED: putative methyltransferase NSUN5 isoform 1 [Callithrix jacchus] Length = 429 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 81/410 (19%), Positives = 156/410 (38%), Gaps = 29/410 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + P + G +Q Sbjct: 153 YFKRKGFSYQG-RASSADDLRALKGKRFLLDPVVPELLAFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLSSMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLWTRDT--DDI 337 R + ++ E D P +L+D CS +G R + R + + Sbjct: 272 ARAGVSCCELAEDDFLAVSPSDPRYSQVRYILLDPSCSGSGMQSRQLEEPGARTPSPERL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P+ Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRGALQQNPGAFRLAPVLP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 W ++ E +R +P+ GFF + R+ P+ Sbjct: 389 T-WPLRGLSRFPGAEHCLRASPETTLSG--------GFFVAVIERVEAPR 429 >gi|282851807|ref|ZP_06261170.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri 224-1] gi|282557049|gb|EFB62648.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri 224-1] Length = 464 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F ++ +N G+E + SP + + ++ P Sbjct: 1 MSLPVEFIKKYQNLLGEEESNKFFASIDSPSKKGFRLNPLKNNYQDVQYSLEEPIEFTSD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E + G + QD SA P VLDLCAAPGGK+ + + Sbjct: 61 GYYGEVSGRDSEWTGGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R + K FD +LVDAPCS G Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + + ++ Q+++L Q + +KPGG +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMKMLKPGGELVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYW-KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + +E + L D + + PE +R+ F Sbjct: 241 VENYHLKIEPLKLYPGMSMGKADWSKSNLPELKDTVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 LR Sbjct: 293 LR 294 >gi|238853388|ref|ZP_04643767.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri 202-4] gi|238833960|gb|EEQ26218.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri 202-4] Length = 464 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F ++ +N G+E + SP + + ++ P Sbjct: 1 MSLPVEFIKKYQNLLGEEESNKFFASIDSPSKKGFRLNPLKNNYQDVQYSLEEPIEFTSD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E + G + QD SA P VLDLCAAPGGK+ + + Sbjct: 61 GYYGEVSGRDSEWTGGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R + K FD +LVDAPCS G Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + + ++ Q+++L Q + +KPGG +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMKMLKPGGELVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYW-KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + +E + L D + + PE +R+ F Sbjct: 241 VENYHLKIEPLKLYPGMSMGKADWSKSNLPELKDTVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 LR Sbjct: 293 LR 294 >gi|315648462|ref|ZP_07901561.1| Fmu (Sun) domain protein [Paenibacillus vortex V453] gi|315276156|gb|EFU39502.1| Fmu (Sun) domain protein [Paenibacillus vortex V453] Length = 461 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 55/271 (20%), Positives = 103/271 (38%), Gaps = 37/271 (13%) Query: 179 DLTVKFDIETWAHKLNA----VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 L D + + + + + E P A G++++Q+ SA V Sbjct: 41 RLKAVHDADNLKNLIRQFHLTAVPWCDSGYYYDDNERPGKHPYHAAGLYYIQEPSAMSAV 100 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 +L ++LDL AAPGGKT+ ++ + + ++ R L N++R+ + Sbjct: 101 ELLDPQPGETILDLAAAPGGKTSHIASKMMGQGLLVSNEIHPERARILAENVERMGIKNT 160 Query: 292 DIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D FD +++DAPCS G R+ + D + A Q ++ Sbjct: 161 VVTSAAPDQLSRRFVACFDRIMLDAPCSGEGMFRKDAAAIAEWSHDHVELCASRQWDIVQ 220 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + +KPGG + +S C+ +K ++EE+V ++L+ P Sbjct: 221 EAYHMLKPGGTLAYSTCTFNKAENEEMVGRILKQYPDMELRE------------------ 262 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 R+ P + G F L + Sbjct: 263 --MKRLWPHLERGE--------GHFVAVLTK 283 >gi|94988690|ref|YP_596791.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS9429] gi|94992513|ref|YP_600612.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS2096] gi|94542198|gb|ABF32247.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546021|gb|ABF36068.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus pyogenes MGAS2096] Length = 436 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 109/301 (36%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + + + Sbjct: 1 MMSLPKEFIN-TYQAILGKELEDFLASFNQEPVNAFRINPLKNQL-----KTFEHPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKLSGKSQEHVSGLVYSQEPAAQMVAQVAAPQKGSRVLDLAAAPGGKSTHLLAYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R + D FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKVLVENIERFGARNVVVTNESADRLAKVFSHYFDTIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + + A Q+ +L ++ +KPGG +++S C+ +++E+VVQ Sbjct: 175 EGMFRKDPDAIQYWHHGYPAECAKLQKSILEDALTMLKPGGELIYSTCTWAPEENEDVVQ 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + + + + R+ P + F L Sbjct: 235 WLLETY-TFLELVDVPKLNGMVSGIGLPETA----RMYPHRYQGEGQ--------FVAKL 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|154146245|ref|NP_663389.2| putative methyltransferase NSUN5 [Mus musculus] gi|118573086|sp|Q8K4F6|NSUN5_MOUSE RecName: Full=Putative methyltransferase NSUN5; AltName: Full=NOL1/NOP2/Sun domain family member 5; AltName: Full=Williams-Beuren syndrome chromosomal region 20A protein homolog gi|26347971|dbj|BAC37634.1| unnamed protein product [Mus musculus] gi|74146333|dbj|BAE28935.1| unnamed protein product [Mus musculus] gi|148687420|gb|EDL19367.1| NOL1/NOP2/Sun domain family, member 5 [Mus musculus] gi|183396899|gb|AAI65967.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct] Length = 465 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 74/405 (18%), Positives = 150/405 (37%), Gaps = 29/405 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + ++ R +P + + ++ + Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRVNTLKTRPEDAID 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ + + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ + + K+ A D +RL + + Sbjct: 212 DKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLV 271 Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G + R T + + Sbjct: 272 ARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L + F ++ +V+S CSL ++++E+VVQ+ L+ + L P+ Sbjct: 332 QALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W ++ E +R +P+ GFF R Sbjct: 389 T-WPHRGLSTFPGSEHCLRASPETTL--------TGGFFIAVFER 424 >gi|159905923|ref|YP_001549585.1| RNA methylase [Methanococcus maripaludis C6] gi|159887416|gb|ABX02353.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus maripaludis C6] Length = 275 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 122/264 (46%), Gaps = 26/264 (9%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240 E +L + L + + S P + G +++Q S+ IP Sbjct: 27 EDLKKRLEEKGVELEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSVTLNPT 86 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + ++LD+CAAPGGKT L + + + A++++K RL+ LR N++R+ +I + Sbjct: 87 KDDNLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTN 146 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A + K FD +L+DAPC+ D + DI+ A Q +L I +K Sbjct: 147 AVNIDKKLRFDKILLDAPCTGNEI----KDCNRVKTKRDILFCAKRQVELFRTAIEVLKD 202 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CS + ++ E++V+ +L+++ +EL+ L+ + I+M G +++ P Sbjct: 203 GGEMVYSTCSPEIEEDEDIVRYILKNNKN-MELIELSVDDFPGINMIEGEVK-GTLKVIP 260 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 FF R++ Sbjct: 261 PNEP-----------FFIAKFRKV 273 >gi|302517945|ref|ZP_07270287.1| RNA-binding Sun protein [Streptomyces sp. SPB78] gi|302426840|gb|EFK98655.1| RNA-binding Sun protein [Streptomyces sp. SPB78] Length = 476 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 18/228 (7%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-LSQRDQILVRAIVNVTLRFLPRID 64 R+++ L V + +L ++ + RD L +V TLR D Sbjct: 66 PVRVLAFDALRAVDERDAYANLVLPALLREAREKGGFDARDAALATELVYGTLRGRGTYD 125 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 A++ + L + +L + Q+L + +A V VE A+ + ++ V Sbjct: 126 AIIAACVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSATVELARVVLGD-GRSRFV 184 Query: 125 NSILRRVSREKIELL-------------QRIAGISIIPEWFKERLENFYGKER--VLAIS 169 N++LRR+SR ++ + ++ + P W L + G R + + Sbjct: 185 NAVLRRISRNDLDAWLAEVAPPFEDDPEEHLSVVHSHPRWVVSALWDSLGGPRGGIEDLL 244 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 A + L + L+A+ + P ++ G Sbjct: 245 TADNERPEVTLVARPGRTDAEALLDALGEERALPG-RWSPYAVRLTEG 291 >gi|330508978|ref|YP_004385406.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta concilii GP-6] gi|328929786|gb|AEB69588.1| NOL1/NOP2/sun family putative RNA methylase [Methanosaeta concilii GP-6] Length = 301 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 104/236 (44%), Gaps = 19/236 (8%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTA 268 + +L GF +Q+ + +P + VLDLCA+PG KT Q+ +V A Sbjct: 73 VENLSGF----IHIQEELSMVPPLVLDPQPGELVLDLCASPGSKTCQISQMMKNLGRVIA 128 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPD 327 + S R+ LR N +RL + I D + + FD VLVDAPCSS G RR P Sbjct: 129 NEPSLARIAPLRSNCERLGVMNVAITRYDGRRFPSRPVQFDRVLVDAPCSSEGRERRGPG 188 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 VL + + Q LL I KPGGIVV+S C+ +++E V++ VL ++ + Sbjct: 189 VLCKSSSKRSMDLHRLQADLLRNAIRLTKPGGIVVYSTCTYAPEENELVIESVLETARLE 248 Query: 388 VELVP---LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +P + + + E R P + + GFF L + Sbjct: 249 RISIPGLLACPGITEWGGINLNHEVEKTARYYPHL--------NDTGGFFVAKLIK 296 >gi|31559059|gb|AAP50513.1| Fmv [Vibrio vulnificus] Length = 178 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 26/200 (13%) Query: 247 DLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYC 302 D CAAPGGKTA VS +V ALD ++RL+++ NL RL+L A + + Sbjct: 1 DCCAAPGGKTAHILERVSAREVVALDCDEQRLKRVTENLKRLNLQAKVICGDARNPEQWW 60 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD +L+DAPCS+TG IRRHPD+ W R T+DI A Q ++ + +KPGG +V Sbjct: 61 QGEQFDRILLDAPCSATGVIRRHPDIKWLRRTEDITALAQLQSEIFDAMWAQLKPGGTLV 120 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++ E V+ L + + + +I P Sbjct: 121 YATCSITPMENVEQVKAFLARTSAA--------------QLVGSERENPGRQIIPG---- 162 Query: 423 IDGVSSGMDGFFAVALRRLI 442 MDGF+ L + Sbjct: 163 ----EEDMDGFYYAVLVKQA 178 >gi|55822952|ref|YP_141393.1| rRNA methyltransferase [Streptococcus thermophilus CNRZ1066] gi|55738937|gb|AAV62578.1| rRNA methyltransferase, putative [Streptococcus thermophilus CNRZ1066] Length = 446 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 112/316 (35%), Gaps = 25/316 (7%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 + P F E+ ++ G E + V K Sbjct: 1 MVQFFDRKETMKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQK 54 Query: 196 VMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 I A G+ + Q+ +A + Q+ VLDL AAPGG Sbjct: 55 DYPDPIPGTPWGYYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGG 114 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDA 309 K+ + + + + +++ +R + L N++R + D K FD Sbjct: 115 KSTHLLSYLDNTGLLVSNEINFKRSKVLVENIERFGAKNVVVTNTSADKLAKVFKNYFDM 174 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 ++ D PCS G R+ PD + D + A Q+ +L G+ + PGG +V+S C+ Sbjct: 175 IVFDGPCSGEGMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWS 234 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++E VV +L + P +ELV + S + + R+ P + Sbjct: 235 PEENEGVVAWILENYP-DLELVAIPKLNGMSDGIDFPETA----RMYPHHFKGEGQ---- 285 Query: 430 MDGFFAVALRRLIQPK 445 F + P+ Sbjct: 286 ----FVAKFQDKRMPE 297 >gi|53715011|ref|YP_101003.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis YCH46] gi|52217876|dbj|BAD50469.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides fragilis YCH46] Length = 472 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 117/304 (38%), Gaps = 19/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E G E +S A + + A + Sbjct: 1 MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260 L + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240 Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E +PL A W +A + R P + GFF Sbjct: 241 AWI--RQEFGAEPLPLAVPAEWNITGSLLAGADAPVYRFLPHKTQGE--------GFFLA 290 Query: 437 ALRR 440 ALR+ Sbjct: 291 ALRK 294 >gi|170016993|ref|YP_001727912.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc citreum KM20] gi|169803850|gb|ACA82468.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc citreum KM20] Length = 479 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 34/248 (13%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ SA ++ VLDL AAPGGK+ + + + ++ R + L Sbjct: 78 VYSQEPSAQFVGEVLHPKPGERVLDLAAAPGGKSTHLAAFMQQQGLLWSNEIFLNRAKIL 137 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R+ + + + K FD +L+DAPCS G ++ + D Sbjct: 138 SENIERMGVQNSIVSSQTPAELSAKLPQYFDKILLDAPCSGEGMFHKNEAAIQQWHKDFP 197 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A QR +L + + +KPGG +V+S C+ ++ E+++ +L + P L +N Sbjct: 198 QELADLQRDILSEAVKMLKPGGQIVYSTCTFAPEEDEQMIAWLLSTYP-EFSLEVINKPV 256 Query: 398 WKSIDMAMALSPEG--------------------WIRITPDMLEKIDGVSSGMDGFFAVA 437 ID + R+ P+ L+ G F Sbjct: 257 SARIDDGEPAWADKAYTDGTNHQSQTQSQQILKQTARLWPNHLQGE--------GHFVAK 308 Query: 438 LRRLIQPK 445 L + P+ Sbjct: 309 LSKQANPE 316 >gi|312278352|gb|ADQ63009.1| RRNA methyltransferase, putative [Streptococcus thermophilus ND03] Length = 436 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 111/306 (36%), Gaps = 25/306 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P F E+ ++ G E + V K Sbjct: 1 MKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQKDYPDPIPGTP 54 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 I A G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 WGHYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGGKSTHLLSYLD 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + + +++ +R + L N++R + D K FD ++ D PCS Sbjct: 115 NTGLLVSNEINFKRSKVLVENIERFGAKNVVVTNTSADKLAKVFKNYFDMIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A Q+ +L G+ + PGG +V+S C+ +++E VV Sbjct: 175 GMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWSPEENEGVVAW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L + P +ELV + S + + R+ P + F + Sbjct: 235 ILENYP-DLELVAIPKLNGMSDGIDFPETA----RMYPHHFKGEGQ--------FVAKFQ 281 Query: 440 RLIQPK 445 P+ Sbjct: 282 DKRMPE 287 >gi|218132886|ref|ZP_03461690.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC 43243] gi|217991759|gb|EEC57763.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC 43243] Length = 374 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 26/319 (8%) Query: 1 MKSGM---NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + M N R V +L + + S F+ L + + + + T+ Sbjct: 1 MNNTMDNVNLRAVVLDILLENDKNPGHSNLITGQAL--SKFQYLPKSQRAFISRLAEGTI 58 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 D ++D V S + K ++ ++R+S Q+ Y+D V AV + AV+ A++ + Sbjct: 59 ERSIEEDWLIDHVSSVSTKKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARK-RG 117 Query: 117 NRHFAKLVNSILRR--------VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 VN +LR +K + ++ +PE+ L + G + Sbjct: 118 FSSLTGFVNGVLRSLARDINNIQYPDKSDFIRYCMIRYSMPEYVVRILMDECGS-CTEDV 176 Query: 169 SDACISPLYIDLTVKFDIET---WAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAE 220 + + + T KL + + + + L F E Sbjct: 177 LKGFEKEHRLYIRCNTGLITPGGLKKKLTDEGVTVEDTCVPYAFAISGYDYLADLTSFEE 236 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEK 278 G++ VQD S+ + V+D+CAAPGGK G+ +T A DVS+ ++ Sbjct: 237 GLFQVQDLSSILAGLAVNPNPGDYVVDVCAAPGGKCLHAAQRGSDITVEARDVSEAKVGL 296 Query: 279 LRCNLDRLHLYAEDIIEMD 297 +R N++RLH+ D Sbjct: 297 IRDNIERLHMDNVTAKVWD 315 >gi|323306054|gb|EGA59788.1| Ncl1p [Saccharomyces cerevisiae FostersB] Length = 684 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|322371799|ref|ZP_08046342.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus DX253] gi|320548684|gb|EFW90355.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus DX253] Length = 301 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 113/301 (37%), Gaps = 15/301 (4%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP---TGGIRL 205 P E + + + R + + T A V L Sbjct: 3 PLERYEPILDDFEAFRAACERPLPSVVRVNRIKATREQATRAFDEENVEWTPREWNENVL 62 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 + + + P F G Q+ +SIP + VLD CAAPG KT QL + Sbjct: 63 EIEGKPGNTWPSFH-GWTHGQEEVSSIPAFVLDPEPGERVLDSCAAPGSKTTQLAALMDD 121 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSS 318 V A D + RL LR N +RL + + DA ++ K FDA LVD PCS Sbjct: 122 TGLVVANDSNLGRLSALRFNTERLGVTCAAVTNQDARNFSLKPFGLSAFDAALVDVPCSC 181 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 GT+R++P L D I A Q+ +L + + + GG VV+S C+ +++E V+ Sbjct: 182 EGTVRKNPTALDDWGLDHIEGVAGVQKGILRRAVQATREGGTVVYSTCTFAPEENEAVLD 241 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 VL + + + + IR ++ + GFF L Sbjct: 242 YVLAREDCRLVEYDIGLRSEPGLTEWHGDEFDESIR----KAKRFYPHHNDTGGFFCAKL 297 Query: 439 R 439 Sbjct: 298 E 298 >gi|226325128|ref|ZP_03800646.1| hypothetical protein COPCOM_02920 [Coprococcus comes ATCC 27758] gi|225206476|gb|EEG88830.1| hypothetical protein COPCOM_02920 [Coprococcus comes ATCC 27758] Length = 473 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 102/259 (39%), Gaps = 19/259 (7%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 ++ + G S P + G++++Q+ SA P VLD+CAA Sbjct: 65 EITPIPWIDNGFYYDGEKISPAKHPYYFAGLYYLQEPSAMTPANRLPVEPGDRVLDVCAA 124 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKL 306 PGGK + + + + A D+S R L NL+ + E + Sbjct: 125 PGGKATELGAKLQNEGVLVANDISSSRARGLLKNLEVFGIGNMLVMSEEPGRLERYFSGY 184 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L+DAPCS G R+ ++ + + QR ++ Q +KPGG++++S C Sbjct: 185 FDKILIDAPCSGEGMFRKDKKMVRAWEEHGPEFFSKLQRSIITQAARMLKPGGMMLYSTC 244 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-----ALSPEGWIRITPDMLE 421 + D ++E ++ +L P E+ + + +RI P ++ Sbjct: 245 TFDPLENEGTIEYLLGEYP-EFEIQEIAEYEGFAPGRPEVTKSKDPDFAKTVRIFPHHMK 303 Query: 422 KIDGVSSGMDGFFAVALRR 440 G + L++ Sbjct: 304 GE--------GHYLALLKK 314 >gi|325694314|gb|EGD36228.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK150] gi|325696843|gb|EGD38731.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK160] Length = 434 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 118/299 (39%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E G E A I ++ + + T Sbjct: 1 MDFPKGFKEKYEQILGSEAAEFF--ATFDEEPISAFRSNPLKESQQNFSDAIPQTDWGFY 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 ++ G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 59 GKVSG---KSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERFGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D V+ A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTPDYPVQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P +EL+ ++ + + + R+ P + FA R Sbjct: 236 LEEFP--LELIDISKINGMTEGIGFPETA----RMYPHRFKGEGQ--------FAAHFR 280 >gi|225870415|ref|YP_002746362.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp. equi 4047] gi|225699819|emb|CAW93652.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp. equi 4047] Length = 435 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 19/240 (7%) Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + P GV + Q+ +A + Q+ VLDL AAPGGK+ Q + Sbjct: 55 WGYYGRVSGKSPNHVSGVVYSQEPAAQMVAQVASPAKGTRVLDLAAAPGGKSTQLLAYLE 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + + ++S +R + L N++R + D + FD ++ D PCS Sbjct: 115 NTGLLVSNEISTKRSKALVENIERFGARNVIVTNESADRLAAVFPEYFDTIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P+ + D A QR +L + I +KPGG +++S C+ +++EEVV+ Sbjct: 175 GMFRKDPNAVSYWHKDYPAACASLQRSILAEAIPMLKPGGQLIYSTCTWSPEENEEVVRW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L S +EL + K MA + R+ P + F L+ Sbjct: 235 LLESY-DFLELEHI----PKINGMAEGIGMPQAARMYPHRFKGEGQ--------FVAKLK 281 >gi|91793400|ref|YP_563051.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella denitrificans OS217] gi|123356754|sp|Q12MJ8|RSMF_SHEDO RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|91715402|gb|ABE55328.1| NOL1/NOP2/sun family putative RNA methylase [Shewanella denitrificans OS217] Length = 505 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 23/240 (9%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKR 274 + + + +A L VLD+ +APG KT Q+ + + + A + S Sbjct: 92 YIQEASSMLPPTALFTNDDADERAPLRVLDMASAPGSKTTQMAALMNNNGLLIANEYSAS 151 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTR 332 R++ L N+ R+ + + D + + FDAVL+DAPC GT+R+ + L Sbjct: 152 RVKVLHANVLRMGVSNCALTHFDGRVFGEYQYEAFDAVLLDAPCGGEGTVRKDQNALKEW 211 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 DD++ A Q+ L+ +KPGG +V+S C+L + +++ + Q +L P V Sbjct: 212 QLDDVIAIADTQKDLIEAAFLALKPGGALVYSTCTLSQLENQAICQHLLSRYPEAVAFES 271 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI-------QPK 445 L + + A A + EG++ + P + + GFF +R+ QPK Sbjct: 272 LATLF---DGAAKACTEEGFLHVWPQIYDSE--------GFFVAKMRKTASVPRIKSQPK 320 >gi|330446010|ref|ZP_08309662.1| ribosomal RNA small subunit methyltransferase F [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490201|dbj|GAA04159.1| ribosomal RNA small subunit methyltransferase F [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 476 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 62/266 (23%), Positives = 120/266 (45%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L V G ++ E + + G++++Q+AS+ +PV N+ Sbjct: 57 ANRGWTLTPVPWCDTGFWIEREDEDSVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDA 116 Query: 244 SVL--DLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 D+ +APG KT + + + A +++ R++ L NL R +Y + D Sbjct: 117 LDCVLDMASAPGSKTTQIACTMQNQGALVANELAASRIKVLHSNLQRCGVYNAALTHFDG 176 Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD++L+DAPCS G IR+ D + I + A QR L++ +K Sbjct: 177 CVFGTWAPEAFDSILLDAPCSGEGAIRKDDDAMANWSLASIEEIAEVQRNLIVSAFQALK 236 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG++V+S C+L++ ++++V + V+ PLN + +L+ +G++ + Sbjct: 237 TGGVMVYSTCTLNQSENQDVCHFLKEKFGDAVQFEPLNDLF---DGAEKSLTKDGFLHVY 293 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF +R+L Sbjct: 294 PQIFDSE--------GFFVARIRKLA 311 >gi|189067497|dbj|BAG37756.1| unnamed protein product [Homo sapiens] Length = 466 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 153/409 (37%), Gaps = 29/409 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILPDPSCSGSGMPSRQLEEPGAGTPSPVRL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L P Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 A W ++ E +R +P+ GFF + R+ P Sbjct: 389 A-WPHRGLSTFPGAEHCLRASPETTLSS--------GFFVAVIERVEVP 428 >gi|322391752|ref|ZP_08065217.1| NOL1/NOP2/sun family protein [Streptococcus peroris ATCC 700780] gi|321145232|gb|EFX40628.1| NOL1/NOP2/sun family protein [Streptococcus peroris ATCC 700780] Length = 437 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 117/299 (39%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F ++ + A + + E+ +A+ G Sbjct: 1 MQFPEGFVKK-YETILGDEARAFLASFDDEAVSAFRINPLRESQVSFSDAIPNTPWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL+ Sbjct: 60 KVS----GKSQEHVTGLVYSQEPAAQMVAQVAQPKPGMKVLDLAAAPGGKSTQLVSYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 DGLLVSNEISSKRAKILVENMERFGATNVVVTNESTDRLAKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE++ + Sbjct: 176 MFRKQPDAMDYWSVDYPGQCASLQREILEDAVNMLGEGGRLVYSTCTWAPEENEEIINWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + EL+P+ + + + R+ P + F L+ Sbjct: 236 LDTY--DFELIPIEHINGMVPGIDLPETA----RMYPHHFKGEGQ--------FVAHLK 280 >gi|312373886|gb|EFR21555.1| hypothetical protein AND_16850 [Anopheles darlingi] Length = 3164 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 110/321 (34%), Gaps = 58/321 (18%) Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 L + W +L+ + + I G Q+A + IP Sbjct: 2570 PPRSLEWYPNELAWQLELSRKDIRRSEPLFRLHNFLISET---NSGNISRQEAVSMIPPL 2626 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDR 285 + + VLD+CAAPG KTAQLI S V A DV R L R Sbjct: 2627 VLDVQPHHKVLDMCAAPGSKTAQLIESLHGSDGAKIPSGFVIANDVDNNRCYMLVHQAKR 2686 Query: 286 LHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 L + D+ + +D +L D PCS GT+R++PD+ Sbjct: 2687 LSSPCFMVTNADSSTFPVLQISQPDGTIAPLKYDRILCDVPCSGDGTMRKNPDIWTKWSL 2746 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---- 390 + Q ++L +G + GG +V+S CSL+ ++E V+ ++L+ S +EL Sbjct: 2747 NQANNLHGLQHRILKRGAELLAVGGKLVYSTCSLNPIENEAVLHRLLKQSEGALELSECA 2806 Query: 391 ------------------------------VPLNSAYWKSIDMAMALSPEGWIRITPDML 420 VP N DM + E + D Sbjct: 2807 NLLPSLKYRKGMTYWEPATKDLKYYKTFADVPENQRTVVRPDMFPPSAEEAIEKYHLDRA 2866 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 +I GFF L + Sbjct: 2867 LRILPHHQNTGGFFIALLEKK 2887 >gi|156103405|ref|XP_001617395.1| sun-family protein [Plasmodium vivax SaI-1] gi|148806269|gb|EDL47668.1| sun-family protein, putative [Plasmodium vivax] Length = 376 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 65/431 (15%), Positives = 127/431 (29%), Gaps = 89/431 (20%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 L + L + + + +D+ + V +R + + Sbjct: 20 SPLDIYMRLYFKAN---SIKSKDKPFISDHVYNIIRNKTLLSYLSAP------------- 63 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 Y V K + + +N+ Sbjct: 64 ---------------SPLYTSV------IKTYFASDRWKYEMNNE-----------KIPA 91 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVMLP 199 P+ E+L N YG+++ + + L V + L + + Sbjct: 92 HVRYSFPKELYEQLVNCYGEKKSHTLMSILNEKAPVFLRVNTNKISRNDLYKLLMSKGVS 151 Query: 200 TGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 L + + + G + +QD ++ I VLD CA G Sbjct: 152 VEKCVNSPQGLLLTKSYILKNNNEYRRGFFEMQDEASQIVSSKIPVQPGYKVLDFCAGSG 211 Query: 254 GK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDA 309 GK + + + KV DV + L + + L R + + D Sbjct: 212 GKTLAFSPKMENTGKVYLHDVRDKMLSQAKVRLRRAGIQNYILLHSNHILLNKLVGCMDT 271 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 V+VDAPC+ TG +RR+P++ + + QR++ + + ++K G + + CS+ Sbjct: 272 VIVDAPCTGTGALRRNPEMKHKYTNGRLYEYVNLQREIFQRALLYLKKNGKIAYITCSIL 331 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ + + + P +S S Sbjct: 332 DAENVHQAKYFCEKHNLFLSEPPFHS----------------------------LPQSKS 363 Query: 430 MDGFFAVALRR 440 MDGFF R Sbjct: 364 MDGFFLAIFER 374 >gi|190408849|gb|EDV12114.1| tRNA:m5C-methyltransferase [Saccharomyces cerevisiae RM11-1a] Length = 682 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGYSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|125717779|ref|YP_001034912.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK36] gi|125497696|gb|ABN44362.1| NOL1/NOP2/sun family protein, putative [Streptococcus sanguinis SK36] Length = 434 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 114/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGAEAAEFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D+ + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVLVTNESADSLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTLDYPAQCAQLQREILTTAMSMLAKDGRLVYSTCTWAPEENEDIVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMAEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|302308712|ref|NP_985726.2| AFR179Cp [Ashbya gossypii ATCC 10895] gi|299790759|gb|AAS53550.2| AFR179Cp [Ashbya gossypii ATCC 10895] Length = 700 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 131/366 (35%), Gaps = 62/366 (16%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 ++ + ++ L RI G + E EN + + + D L D Sbjct: 55 DFKKTCQTQLPLTFRITGSRKHAQEVLELFENEHLPKLTNVVWDGEKVEAPKALPWYGDN 114 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 W ++ ++ K +V A G Q+A + IP + G + SVL Sbjct: 115 MAWQLDVSKSVIRKNEEFSKMQRFLVVEN---AVGNISRQEAVSMIPPIVLGVEPHHSVL 171 Query: 247 DLCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 D+CAAPG KTAQ V A D RR L L RL+ ++ DA Sbjct: 172 DMCAAPGSKTAQLVEALHANGPEPSGFVVANDADYRRSHMLVHQLKRLNSANLIVVNHDA 231 Query: 299 FDYC---------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + FD VL D PCS GT+R++ +V T + Q +L Sbjct: 232 QFFPRIKTAEGSKDFLKFDRVLCDVPCSGDGTMRKNINVWKDWGTGSGLGLHTVQLNILN 291 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA------------- 396 +G++ +K GG +V+S CSL+ ++E VV LR ++LV + Sbjct: 292 RGLTLLKNGGRLVYSTCSLNPIENEAVVAAALRKWGAKIKLVNCDDQLLGLVRSTGISSW 351 Query: 397 ---------------------YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + S + A + E IR+ P GFF Sbjct: 352 PVLDKNYEEKNKGDDGTIATWFPPSEEEAKEFNLENCIRVYPH--------QQNTGGFFI 403 Query: 436 VALRRL 441 ++ Sbjct: 404 SVFEKI 409 >gi|311110618|ref|ZP_07712015.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri MV-22] gi|311065772|gb|EFQ46112.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri MV-22] Length = 464 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 119/302 (39%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F ++ +N G+E + SP + + ++ P Sbjct: 1 MSLPVEFIKKYQNLLGEEESNKFFASIDSPSKKGFRLNPLKNNYQDVQYSLEEPIEFTSD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E + G + QD SA P VLDLCAAPGGK+ + + Sbjct: 61 GYYGEVSGRDSEWTGGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R + K FD +LVDAPCS G Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + + ++ Q+++L Q ++ +KPGG +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMNMLKPGGELVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYW-KSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + +E + L D + + PE +R+ F Sbjct: 241 VENYHLKIEPLKLYPGMSMGKADWSKSNLPELKDTVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 LR Sbjct: 293 LR 294 >gi|269102648|ref|ZP_06155345.1| ribosomal RNA small subunit methyltransferase F [Photobacterium damselae subsp. damselae CIP 102761] gi|268162546|gb|EEZ41042.1| ribosomal RNA small subunit methyltransferase F [Photobacterium damselae subsp. damselae CIP 102761] Length = 373 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 16/203 (7%) Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+ +APG KT + + + A +++ R++ L NL R +Y+ + D + Sbjct: 17 VLDMASAPGSKTTQIACAMENRGALVANELAASRIKVLHSNLQRCGVYSVALTHFDGCVF 76 Query: 302 --CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + FD++L+DAPCS G IR+ D + + I + A QR L++ +KPGG Sbjct: 77 GGWAPESFDSILLDAPCSGEGAIRKDEDAMKNWTLNSIEEIAEVQRNLIVSAFQALKPGG 136 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++V+S C+L+ +++++V + + VE PL+ + L+ +G++ + P + Sbjct: 137 VMVYSTCTLNTRENQDVCHYLKETYGDAVEFEPLDDLFE---GAKETLTEDGFLHVYPQV 193 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 + GFF +R+L Sbjct: 194 YDSE--------GFFVARIRKLA 208 >gi|256269254|gb|EEU04576.1| Ncl1p [Saccharomyces cerevisiae JAY291] Length = 682 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGYSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|195978037|ref|YP_002123281.1| tRNA and rRNA cytosine-C5-methylases [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974742|gb|ACG62268.1| tRNA and rRNA cytosine-C5-methylases [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 438 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 18/222 (8%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ +A + Q+ VLDL AAPGGK+ Q + + + + ++S +R + L Sbjct: 76 VYSQEPAAQMVAQVASPAKGTRVLDLAAAPGGKSTQLLAYLENTGLLVSNEISTKRSKAL 135 Query: 280 RCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R + D + FD ++ D PCS G R+ P+ + D Sbjct: 136 VENIERFGARNVVVTNESADRLAAVFPEYFDTIVFDGPCSGEGMFRKDPNAMSYWHKDYP 195 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR +L + I +KPGG +++S C+ +++EEVV+ +L S +EL + Sbjct: 196 AACANLQRSILSEAIPMLKPGGQLIYSTCTWSPEENEEVVRWLLESY-DFLELEHIPKIN 254 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S + M + R+ P + F L+ Sbjct: 255 GMSEGIGMPQAA----RMYPHRFKGEGQ--------FVAKLK 284 >gi|323498366|ref|ZP_08103366.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis DSM 21326] gi|323316608|gb|EGA69619.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio sinaloensis DSM 21326] Length = 474 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 21/258 (8%) Query: 193 LNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL---NNLSVLD 247 L+ V G + E + + G++++Q+AS+ +PV SVLD Sbjct: 63 LSPVPWCPEGFWIEADESSVPLGNTAEHMSGLFYIQEASSMMPVSALFLSSEDEFTSVLD 122 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--C 302 + AAPG KT Q + + + A + S R++ L N++R + + D + Sbjct: 123 MAAAPGSKTTQIAAKMGNDGVLVANEFSSSRVKVLHANIERCGVRNTVLSNYDGRVFGGW 182 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + F+AVL+DAPCS GT+R+ D + +++ + Q+ L+ +K GG +V Sbjct: 183 LPEQFEAVLIDAPCSGEGTVRKDADAMKNWTKSSVIEISETQKDLIESAFHALKVGGSMV 242 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+L +++++V + ++ VE L + D +L+PEG++ I P + Sbjct: 243 YSTCTLSIEENQQVCHHLKQTFGDAVEFQSLAGLFP---DAEKSLTPEGFLHIFPQTYDC 299 Query: 423 IDGVSSGMDGFFAVALRR 440 GFF +++ Sbjct: 300 E--------GFFVARIKK 309 >gi|268319392|ref|YP_003293048.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii FI9785] gi|262397767|emb|CAX66781.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii FI9785] Length = 463 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ + G+E A SP + + ++ P + Sbjct: 1 MSLPIEFVEKYKKLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 E + G + QD SA P VLDLCAAPGGK+ L Sbjct: 61 GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDD 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R + D FD +LVDAPCS G Sbjct: 121 TGLLVANEISKSRAKDLRENLERWGATNVVVTNESPDRLSKKMPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P D ++ Q+++L + + +KP G +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPDGEIVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + P+ +E + L S + + + PE +R+ F Sbjct: 241 VENYPLEIEPLKLYSGMSAGRPEWSKSNLPELKETVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 L+ Sbjct: 293 LK 294 >gi|225028496|ref|ZP_03717688.1| hypothetical protein EUBHAL_02773 [Eubacterium hallii DSM 3353] gi|224954181|gb|EEG35390.1| hypothetical protein EUBHAL_02773 [Eubacterium hallii DSM 3353] Length = 556 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 20/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E A + + P ++ G++++Q+ SA P VL Sbjct: 48 ERIAPFHLKKVPWISNGYFYNAEDVPAKHPFYSAGLYYLQEPSAMTPASRLKVQPGERVL 107 Query: 247 DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 DLCAAPGGK +L + A D++ R + L NL+ + + Sbjct: 108 DLCAAPGGKATELGAALQGEGLLVANDINTARAKALLRNLELFGISNSFVTNEPPHVLAE 167 Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + F ++VDAPCS G R++P V+ + + QR++++Q + PGG++ Sbjct: 168 RFPEFFHKIMVDAPCSGEGMFRKNPAVVDSWKEKGPEYFSKLQREIIVQAADMLLPGGMM 227 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS------IDMAMALSPEGWIRI 415 +S C+ ++E+ + +L+ P +E+VP+ + D A S + RI Sbjct: 228 FYSTCTFSPLENEKTITHLLKERP-DMEVVPMEDYENFAEGLTSYKDEAFDESCKLCRRI 286 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P + G F L + Sbjct: 287 WPHKMSGE--------GHFMALLHKK 304 >gi|258648576|ref|ZP_05736045.1| NOL1/NOP2/sun family protein [Prevotella tannerae ATCC 51259] gi|260851354|gb|EEX71223.1| NOL1/NOP2/sun family protein [Prevotella tannerae ATCC 51259] Length = 449 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 62/300 (20%), Positives = 110/300 (36%), Gaps = 18/300 (6%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +PE F + ++ G E A+ A + V + T + Sbjct: 3 HLPEAFISQTKSLLGLEETEALIKALSEEAPTSIRVNPNKATAIS--GESVPWCETGYYL 60 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQLI---V 261 S P F G ++VQ+AS+ Q+ VLDLCAAPGGK+ Sbjct: 61 SERPSFTLDPLFHAGAYYVQEASSMFLSQVIKALPEEPRRVLDLCAAPGGKSTLWRAELP 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTG 320 + A + RR L NL + + E + FD + D PCS G Sbjct: 121 EQTLLVANEPIHRRAMILAENLAKWGHPDVIVTEDYPKSFSHLPGCFDVIAADVPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + +++ A Q +++ ++ GG +V+S C+ ++ ++E+ ++++ Sbjct: 181 MFRKDPGAIDEWSKENVDFCAQRQFEIISDVWPALREGGFLVYSTCTFNRAENEDNIERI 240 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 R + E +P+ I ++ P G F LR+ Sbjct: 241 CRE--LGAETLPIPIKEEWKIRGSLTKDSLHVYHFFPHCTRGE--------GIFFALLRK 290 >gi|312862813|ref|ZP_07723053.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis F0396] gi|311101673|gb|EFQ59876.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis F0396] Length = 436 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 23/299 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P F E+ N G + + + +A+ G Sbjct: 1 MQFPSDFIEKYNNLLG-DEAKDFFASFDQEAVSAYRTNPLKKQQKDFPDAIPETPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K A G+ + Q+ +A + Q+ VLDL AAPGGK+ + + Sbjct: 60 KIS----GKSADHATGLVYSQEPAAQMVAQVAAPAKGSRVLDLAAAPGGKSTHLLSYLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D K FD ++ D PCS G Sbjct: 116 TGLLVSNEINPKRSKILVENIERFGARNVVVTNTLADKLAKVFKNYFDTIVFDGPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + D + A Q+ +L G+ + PGG +++S C+ +++E VV + Sbjct: 176 MFRKDPKAIQYWHKDYPSELAQLQKDILSDGLKMLAPGGQLIYSTCTWSPEENEGVVAWI 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + P +ELV + S + + R+ P + F + Sbjct: 236 LENYP-DLELVQIPKWNGMSDGIDFPETA----RMYPHHFKGEGQ--------FIAKFQ 281 >gi|55377492|ref|YP_135342.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula marismortui ATCC 43049] gi|55230217|gb|AAV45636.1| tRNA and rRNA cytosine-C5-methylases [Haloarcula marismortui ATCC 43049] Length = 318 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 20/252 (7%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 G+ + + P F G Q+ + IP + V D CAAPG KT Q Sbjct: 72 WHDGLFVLPEDSPGANWPYFH-GWIHGQEEVSVIPATVLDPQPGERVWDACAAPGSKTTQ 130 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDAVL 311 L + +V A D + R+ LR N +RL + D ++ + +D L Sbjct: 131 LAALMEDTGEVVATDNNLGRISALRTNTERLGATTVAVTHEDGRNHSLKPFDGEGYDRAL 190 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 VD PCS GTIR++PD L + + Q+ +L + + +PGG VV+S C+ + Sbjct: 191 VDVPCSCEGTIRKNPDTLEDWSLSHVEGISGVQKGILKRAVEVTEPGGTVVYSTCTFAPE 250 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVS 427 ++E V+ VL + L + I D + S RI P Sbjct: 251 ENEAVLDYVLDEVACEIVDYDLPLNHAPGITDWEDESFDPSVADAKRIYPHH-------- 302 Query: 428 SGMDGFFAVALR 439 + GFF L Sbjct: 303 NDTGGFFCAKLE 314 >gi|297487827|ref|XP_002696495.1| PREDICTED: NOP2/Sun domain family, member 2 [Bos taurus] gi|296475648|gb|DAA17763.1| NOP2/Sun domain family, member 2 [Bos taurus] Length = 777 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 54/274 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 157 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 216 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 RR L RL ++ DA +D +L D PCS GT+ Sbjct: 217 NRRCYLLVHQAKRLGSPCIMVVNHDASCIPRLQVDVNGRKEILFYDRILCDVPCSGDGTM 276 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 277 RKNVDVWKKWSALNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 336 Query: 383 SSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S + + ++ +G +I P M Sbjct: 337 KSEGALELADVSSELPGLKWVPGLSQWKVMTKDGQWFTSWDDVPHNRHTQIRPTMFPPKD 396 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442 +I GFF L + Sbjct: 397 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 430 >gi|327469556|gb|EGF15025.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK330] Length = 434 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 113/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL +APGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPTKGMKVLDLASAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVLVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E++V + Sbjct: 176 MFRKQPDATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVTWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|325689912|gb|EGD31916.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK115] Length = 434 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 112/299 (37%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ E + +A+ G Sbjct: 1 MDFPKGFKEK-YEQILGAEAADFFATFDEEPISAFRSNPLKEGQQNFSDAIPQTDWGFYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +S + G + + Q+ +A + Q+ + VLDL AAPGGK+ + + Sbjct: 60 KVSGKSAEHVTG----LVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINSKRSKILVENIERYGARNVVVTNESAERLAQVFEGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD D + A QR++L +S + G +V+S C+ +++E VV + Sbjct: 176 MFRKQPDATQYWTLDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENENVVAWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P+ + +P + + I R+ P + FA R Sbjct: 236 LEEFPLELIDIPKINGMTEGIGFPETA------RMYPHRFKGEGQ--------FAAHFR 280 >gi|306820624|ref|ZP_07454253.1| NOL1/NOP2/sun family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551355|gb|EFM39317.1| NOL1/NOP2/sun family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 436 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 55/263 (20%), Positives = 106/263 (40%), Gaps = 19/263 (7%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 +P L +I P + G +++Q+ SAS V + VLD Sbjct: 38 DIKSDCEYEKVPWSEDSLYVSEGNISKNPLYHTGAFYIQEPSASSVVNFLDVKKGMKVLD 97 Query: 248 LCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYC 302 +CA+PGGKT Q+ + + D + R+ +L N++ L I D Sbjct: 98 MCASPGGKTFQISQRLSDDDILISNDANNSRVPQLLRNIEYHGLANVMITNETQDKLAEN 157 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD +L+D PCS G R+ ++ + + Q+ LL + +K GG ++ Sbjct: 158 FPSFFDRILLDVPCSGEGMFRKDSKLMSSY-EKSKSQLVPVQKDLLTKASKMLKKGGKLI 216 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C+ +K+++E + + L + E++ + + + + S R+ P L Sbjct: 217 YSTCTFNKRENELNIIEFLEEN-SDFEIINIEKNFNFTSFDELKESA----RLFPHKLRG 271 Query: 423 IDGVSSGMDGFFAVALRRLIQPK 445 G F +++ + + Sbjct: 272 E--------GHFLALVQKKGEEE 286 >gi|227890088|ref|ZP_04007893.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849532|gb|EEJ59618.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 461 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ + G+E A SP + + ++ P + Sbjct: 1 MSLPIEFVEKYKKLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 E + G + QD SA P VLDLCAAPGGK+ L Sbjct: 61 GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDD 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R + D FD +LVDAPCS G Sbjct: 121 MGLLVANEISKSRAKDLRENLERWGATNVVVTNESPDRLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P D ++ Q+++L + + +KP G +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPDGEIVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + P+ +E + L S + + + PE +R+ F Sbjct: 241 VENYPLEIEPLKLYSGMSAGRPEWSKSNLPELKETVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 L+ Sbjct: 293 LK 294 >gi|119224046|gb|AAI26627.1| NSUN2 protein [Bos taurus] Length = 690 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 54/274 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 70 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 129 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 RR L RL ++ DA +D +L D PCS GT+ Sbjct: 130 NRRCYLLVHQAKRLGSPCIMVVNHDASCIPRLQVDVNGRKEILFYDRILCDVPCSGDGTM 189 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 190 RKNVDVWKKWSALNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 249 Query: 383 SSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S + + ++ +G +I P M Sbjct: 250 KSEGALELADVSSELPGLKWVPGLSQWKVMTKDGQWFTSWDDVPHNRHTQIRPTMFPPKD 309 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442 +I GFF L + Sbjct: 310 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 343 >gi|116627792|ref|YP_820411.1| rRNA methyltransferase, putative [Streptococcus thermophilus LMD-9] gi|116101069|gb|ABJ66215.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus LMD-9] Length = 436 Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 111/306 (36%), Gaps = 25/306 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P F E+ ++ G E + V K Sbjct: 1 MKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQKDYPDPIPGTP 54 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 I A G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 WGHYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGGKSTHLLSYLD 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + + +++ +R + L N++R + D K FD ++ D PCS Sbjct: 115 NTGLLVSNEINFKRSKVLVENIERFGAKNVVVTNTSADKLAKVFKNYFDMIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A Q+ +L G+ + PGG +V+S C+ +++E VV Sbjct: 175 GMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWSPEENEGVVAW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L + P +ELV + S + + R+ P + F + Sbjct: 235 ILENYP-DLELVAIPKLNGMSDGIDFPETT----RMYPHHFKGEGQ--------FVAKFQ 281 Query: 440 RLIQPK 445 P+ Sbjct: 282 DKRMPE 287 >gi|320168112|gb|EFW45011.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Capsaspora owczarzaki ATCC 30864] Length = 812 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 79/425 (18%), Positives = 138/425 (32%), Gaps = 93/425 (21%) Query: 95 YLDVADYAVVDLAVE-QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFK 153 YLD + E AK+ +E + R ++ + A + + Sbjct: 83 YLDNKKNRKLRQQKERAAKKAEEGIPADPAQRAEYHRHQPIEMTNARFEAFYKGLSQIIP 142 Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 E + + + + + +T +L ++ E + Sbjct: 143 ENEWDAFMETIRKPLPTSF------RITGNSKKAAEMKRLLHQFYFPSIETVEIAGERVS 196 Query: 214 S---LPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--------DLCAAPGGKTAQLIVS 262 L + + + D S I L D+CAAPG KT QL+ Sbjct: 197 RPECLSFYPDERAYQLDTSRKIFRSHPALSAFHKFLTVEVEMVLDMCAAPGSKTGQLVEM 256 Query: 263 GAKV---------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKK 305 + A D + +R L RL + + +DA + P Sbjct: 257 LHQNDELMPSGFVVANDANYKRCYLLIHQTKRLCSPSLLVTNLDASLFPTILPGNRQPPV 316 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 LFD +L DAPCS GT+R++ DV Q ++L + + ++ GG++V+S Sbjct: 317 LFDRILCDAPCSGDGTMRKNLDVWKNWRPSSGSNMHRLQIRILRRAVQLLEIGGMMVYST 376 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----------------------------- 396 CS+ ++E VV +L+ P +ELV ++ Sbjct: 377 CSMHPGENEAVVAAILQQMPGALELVDVSDKLPGLKRIPGLHTWKASAAVSKLMDGEGNW 436 Query: 397 ---------------------YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + ++A AL E +R+TP + GFF Sbjct: 437 YSDASEVPVGHKEKRALRGSLFPPPPEVAAALHLERCVRVTPQLQ--------NTGGFFI 488 Query: 436 VALRR 440 LR+ Sbjct: 489 ALLRK 493 >gi|90578629|ref|ZP_01234439.1| putative sun/nucleolar protein family protein [Vibrio angustum S14] gi|90439462|gb|EAS64643.1| putative sun/nucleolar protein family protein [Vibrio angustum S14] Length = 476 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 139/322 (43%), Gaps = 32/322 (9%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYID----LTVKFDIETWAHKLNAVM 197 + IP+ F + ++ + + AC T+K +E + ++ Sbjct: 1 MHPNIHIPDAFIDLIKQTMPEHLDIDEFIACCKTPLRRSIRVNTLKISVEDFLARVANRG 60 Query: 198 LPTGGIRLKEL----------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL- 246 + + S+ + G++++Q+AS+ +PV N+ Sbjct: 61 WTLTPVPWCDTGFWIEREDEDTVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCV 120 Query: 247 -DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY- 301 D+ +APG KT Q+ + + + A +++ R++ L NL R ++ + D + Sbjct: 121 LDMASAPGSKTTQIASAMQNRGALVANELAASRIKVLHSNLQRCGVHNAALTHFDGCVFG 180 Query: 302 -CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD++L+DAPCS G IR+ D + I + A QR L++ +K GG+ Sbjct: 181 TWAPESFDSILLDAPCSGEGAIRKDEDAMANWSLASIDEIAEVQRNLIVSAFQALKTGGV 240 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L++ +++ V + VE PLN+ + +L+ +G++ + P + Sbjct: 241 MVYSTCTLNQSENQAVCHFLKDKFGDAVEFEPLNTLF---DGAEKSLTKDGFLHVYPQIF 297 Query: 421 EKIDGVSSGMDGFFAVALRRLI 442 + GFF +R+L Sbjct: 298 DSE--------GFFVARIRKLA 311 >gi|332361484|gb|EGJ39288.1| NOL1/NOP2/sun family protein [Streptococcus sanguinis SK1056] Length = 434 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 19/232 (8%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 G+ + Q+ +A + Q+ + VLDL AAPGGK+ + + + + Sbjct: 63 GKSAEHVTGLVYSQEPAAQMVAQIAAPSKGMKVLDLAAAPGGKSTHLLSFLDNTGLLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 +++ +R + L N++R + D + FD +++DAPCS G R+ PD Sbjct: 123 EINSKRSKILVENIERFGARNVLVTNESADRLAQVFEGYFDLIVLDAPCSGEGMFRKQPD 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 D + A QR++L +S + G +V+S C+ +++E++V +L P+ Sbjct: 183 ATQYWTPDYPAQCAQLQREILTAAMSMLAKDGRLVYSTCTWAPEENEDIVTWLLEEFPLE 242 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + +P + + I R+ P+ + FA R Sbjct: 243 LIDIPKINGMTEGIGFPETA------RMYPNRFKGEGQ--------FAAHFR 280 >gi|255079384|ref|XP_002503272.1| predicted protein [Micromonas sp. RCC299] gi|226518538|gb|ACO64530.1| predicted protein [Micromonas sp. RCC299] Length = 1040 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 110/322 (34%), Gaps = 51/322 (15%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + D W + L+ + + + + G Q+ Sbjct: 121 EGNVVEPPRAVRWYPDRLAW-QFNYSRQQLRRLPFLESIHDFVKRANEY--GSITRQETV 177 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------KVTALDVSKRRL 276 + IP + VLD+CAAPG KT QL+ V A DV +R Sbjct: 178 SMIPAFFLNITPDHRVLDMCAAPGSKTFQLLEMLHGSLGEEKEKLPTGFVIANDVDLKRC 237 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPK-------KLFDAVLVDAPCSSTGTIRRHPDVL 329 L R + + +A + FDA+L D PCS GT+R+ PD+ Sbjct: 238 NLLTHQTKRANSPGLLVTNHEAQHFPDIVSRGGRTFQFDAILCDVPCSGDGTMRKAPDIW 297 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + Q K+ ++ +K GG +V+S C+ + + E VV +L+ S ++ Sbjct: 298 PRWSVGNGNGLHPLQLKIAVRAAQLLKIGGRLVYSTCTFNPIEDEAVVAALLQQSEGSLK 357 Query: 390 LVPLNSAYWKSIDMAMALSPE---------------GWIRITPDMLE------------- 421 L+ ++ K + + E ++ P M Sbjct: 358 LLDMSDQLPKLVRSPGIHTWEVHTKAGKANSFEEAQEVAKVHPTMFPDPSYAKLPLERCM 417 Query: 422 KIDGVSSGMDGFFAVALRRLIQ 443 +I GFF ++ + Sbjct: 418 RILPHQDDTGGFFIAVFEKVAE 439 >gi|14600772|ref|NP_147293.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1] gi|5104163|dbj|BAA79479.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1] Length = 352 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 128/309 (41%), Gaps = 20/309 (6%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 I I+ E L + K I +L + + ++ + GI Sbjct: 54 YIQILGEEEARELIAWNDKPLPETIRCNDFLIPCSELESMLSQKGFL--VSRIPWLPHGI 111 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG 263 + E P + + + +G++++QD + + L G +VLD+ AAPGGK+ + Sbjct: 112 EVLEQPIRVGATHEYMQGLYYIQDPGSMLVAYLLGVEPGETVLDMAAAPGGKSTHIQQLS 171 Query: 264 AKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCS 317 A+D+S+RR+ LR ++ R+ + + D+ D V++DAP + Sbjct: 172 RDSTILVAVDISRRRMRALRSHMQRMGFRSYVAVRADSRLLPRIAGTGWADRVMLDAPST 231 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G IR+ P+ +R D+++ Q +LL + +PG ++++ CS ++ E VV Sbjct: 232 GEGIIRKDPERRRSRSQADVLRIHYLQLELLYTAVDLARPGAPILYAACSTSPEEGELVV 291 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDMLEKIDGVSSGMDGF 433 ++L + +D + + G +R+ P G +GF Sbjct: 292 SRLLELRSDVEVERLESPVGSPGVDSYLGVDISGEARRCLRLWPQ--------RHGTEGF 343 Query: 434 FAVALRRLI 442 F +RR + Sbjct: 344 FICRVRRRV 352 >gi|332021238|gb|EGI61623.1| tRNA (cytosine-5-)-methyltransferase [Acromyrmex echinatior] Length = 730 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 133/423 (31%), Gaps = 101/423 (23%) Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE-------- 163 ++ K+N + + + RE + I+PE + + Sbjct: 19 EKQKKNEWNSASQSGSYADIIRENEDFENYYKTQGIVPEDKWDAFISTIRTNLPVAFRIT 78 Query: 164 -------RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG------IRLKELPE 210 +L I + ++ + D E ++ ++ +L+ + Sbjct: 79 GSKAEAKALLEIIKSDFFKEILNADLDSDKEDVNNRAKTILHSLPFYPEELAWQLQLTRK 138 Query: 211 SIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 I + Q+ + +P + + VLD+CAAPG KTAQL Sbjct: 139 DIRRSEAYFRLHNFLIAETNNGSISRQEVVSMVPPLVLDVKPSHKVLDMCAAPGSKTAQL 198 Query: 260 IVSGA---------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302 I V A DV R L RL+ I D+ Sbjct: 199 IEMIHADEENPPEGFVIANDVDNNRCYMLVHQAKRLNSPNILITNHDSSIMPNFMITKSD 258 Query: 303 ---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +L D PCS GT+R++PD+ + Q ++ +G+ + GG Sbjct: 259 GTKDTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGSNLHGIQYRIAKRGLELLAVGG 318 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL-------------------------- 393 +V+S CSL+ ++E V+ ++L + V+L+ Sbjct: 319 RMVYSTCSLNPIENEAVLHRLLCETEDSVQLIDCRDLVPGLICDPGVTHWKPASKNLQYY 378 Query: 394 ---------------NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + A E +RI P + GFF L Sbjct: 379 DSWEDVPEQWQTQVRPKMFPPDANEASKFHLEHCMRILPHHQD--------TGGFFVAVL 430 Query: 439 RRL 441 ++ Sbjct: 431 EKV 433 >gi|240147383|ref|ZP_04745984.1| putative rRNA methylase [Roseburia intestinalis L1-82] gi|257200425|gb|EEU98709.1| putative rRNA methylase [Roseburia intestinalis L1-82] Length = 572 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 67/362 (18%), Positives = 128/362 (35%), Gaps = 31/362 (8%) Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 +R + + LL++ I ++P+ F R+E+ G E + Sbjct: 43 ILCSCMGSRILLRKTRREILCSCMGSRILLRKTRRIKMLPQAFLNRMESMLGNEYPAFLE 102 Query: 170 DACISPLY-IDLT-VKFDIETWAHKLNAVMLPTGGI---RLKELPESIVSLPGFAEGVWW 224 + L +K D K+ + P E ++ P GV++ Sbjct: 103 SYDKDKYQALRLNSIKGDTAQMKEKVPFSLQPVAWAKDGFYYEKDDTPGKHPLHEAGVYY 162 Query: 225 VQDASASIPVQLFG----------TLNNLSVLDLCAAPGGKTAQ------------LIVS 262 +Q+ SA PV +LDLCAAPGGK+ Q Sbjct: 163 IQEPSAMAPVSYLMEDYDVVQKEAADCQERILDLCAAPGGKSTQIAARMHEMYTSGKWKE 222 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTG 320 + ++ R + L N++R+ + + + F +LVDAPCS G Sbjct: 223 QGLLICNEIHPARAKILSENVERMGIANAMVTNESPQRLAEVFEDYFTRILVDAPCSGEG 282 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++ +++ A Q +L S + PGG +V+S C+ ++E + + Sbjct: 283 MFRKNEAACEEWSPENVSLCAERQDGILDCAASMLAPGGRIVYSTCTFAPAENEGSMTRF 342 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVAL 438 L P + + + A E ++ P++ + ++ +G + L Sbjct: 343 LLRHPEFRIVEVKKADGMSAGVPEWAYFREKMGQVLPEIAQTIRLWPQHLNGEGHYLAVL 402 Query: 439 RR 440 + Sbjct: 403 EK 404 >gi|55821033|ref|YP_139475.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311] gi|55737018|gb|AAV60660.1| rRNA methyltransferase, putative [Streptococcus thermophilus LMG 18311] Length = 446 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 110/316 (34%), Gaps = 25/316 (7%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 + P F E+ ++ G E + V K Sbjct: 1 MVQFFDRKETMKFPSDFIEKYKDLLGAEAEEFFTSFDQEA------VSAYRINPLKKQQK 54 Query: 196 VMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 I A G+ + Q+ +A + Q+ VLDL AAPGG Sbjct: 55 DYPDPIPGTPWGYYGKISGKSSDHATGLVYSQEPAAQMVAQVAAPSKGSRVLDLAAAPGG 114 Query: 255 KTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDA 309 K+ + + + + ++ R + L NL+R + D K FD Sbjct: 115 KSTHLLSYVDNTGLLVSNEIDFTRSKVLVENLERFGAKNVVVNHTSADKLAEVFKNYFDM 174 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 ++ D PCS G R+ PD + D + A Q+ +L G+ + PGG +V+S C+ Sbjct: 175 IVFDGPCSGEGMFRKDPDAIQYWHKDYPSELAQLQKDILADGLKMLAPGGQLVYSTCTWS 234 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++E VV +L + P +ELV + S + + R+ P + Sbjct: 235 PEENEGVVAWILENYP-DLELVAIPKLSGMSDGIDFPETA----RMYPHHFKGEGQ---- 285 Query: 430 MDGFFAVALRRLIQPK 445 F + P+ Sbjct: 286 ----FVAKFQDKRMPE 297 >gi|41054371|ref|NP_956005.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Danio rerio] gi|28277601|gb|AAH45365.1| NOL1/NOP2/Sun domain family, member 2 [Danio rerio] gi|182891462|gb|AAI64568.1| Nsun2 protein [Danio rerio] Length = 706 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 118/349 (33%), Gaps = 57/349 (16%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 + L+ Y KE D L+ D W L+ +L + K Sbjct: 20 HAKEILHTLKEKYFKEVQDLEVDGQKIEAPQPLSWYPDELAWHTNLSRKILRKSPLLEKF 79 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267 + G Q+A + IP L +LD+CAAPG KTAQLI Sbjct: 80 HQFLVSETES---GNISRQEAVSMIPPLLLKIEPQHKILDMCAAPGSKTAQLIEMLHSDM 136 Query: 268 ----------ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307 A DV +R L RL+ ++ DA + Sbjct: 137 DVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLHFDNNGKKDILFY 196 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R++ DV T + + Q ++ ++G+ + GG +V+S CS Sbjct: 197 DRILCDVPCSGDGTMRKNIDVWKKWTTSNSLHLHGLQLRIAVRGVEQLAVGGRMVYSTCS 256 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI--------- 413 L+ + E V+ +L S +EL + I ++ EG Sbjct: 257 LNPIEDEAVIAALLEKSEGSLELADASPDLPGLKYMPGITSWKVMTKEGQWFSNFSEVPT 316 Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI 442 +I P M +I GFF L + Sbjct: 317 SRHTQIRPTMFPPSDSEKLTEMRLERCVRILPHHQNTGGFFVAVLVKKA 365 >gi|330444089|ref|YP_004377075.1| RNA methyltransferase [Chlamydophila pecorum E58] gi|328807199|gb|AEB41372.1| RNA methyltransferase [Chlamydophila pecorum E58] Length = 358 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 129/421 (30%), Gaps = 75/421 (17%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR--KKY 80 ++ + + R L +D+ +R IV +T+R ++ ++ P+ Sbjct: 7 SPISEADRVAFYCQQHRALGAKDRKWLRNIVFLTMRHRRLLEFLIFRSGEKPSPQSLVAK 66 Query: 81 SLQQLLR-VSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 + +L + Q ++ ++ + A+ + Sbjct: 67 IEEGVLEDLEAYQ----EIPWPVRYSISDDLARILVRD---------------------- 100 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199 E +RL + E + + +L + +L L Sbjct: 101 --------FGELEAQRLARVWLTEAPITVRVNTQKTSVGELQKILGYPSSPGELVPEALH 152 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 + S P F +G++ +QD + VLD CA GGK+ Sbjct: 153 FDQRY------PLQSTPAFKQGLFELQDEHSQYLALGIPMAKTECVLDFCAGAGGKSLIF 206 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST 319 V D ++ L+K + L R + V+VDAPCS Sbjct: 207 AQKAKHVVLHDSRRKVLQKAKSRLLRAGARNFSLQLAQENLRQESFAT--VVVDAPCSGC 264 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G RRHP+ W + QR++L +V+ G +V+ CS+ K ++E Sbjct: 265 GIFRRHPEKKWQFSERLLKNYCRVQREILACAAQYVRRHGRLVYLTCSILKAENEHQCAY 324 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + +R+ DGFFA R Sbjct: 325 M--------------------RSLGWKEEKRISLRL----------EVGKGDGFFAAYFR 354 Query: 440 R 440 + Sbjct: 355 K 355 >gi|302670992|ref|YP_003830952.1| RNA methylase NOL1/NOP2/sun family protein [Butyrivibrio proteoclasticus B316] gi|302395465|gb|ADL34370.1| RNA methylase NOL1/NOP2/sun family [Butyrivibrio proteoclasticus B316] Length = 505 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 100/268 (37%), Gaps = 34/268 (12%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 E + P G++++Q+ SA PV +LDLCAAPGGK+ Sbjct: 74 PWEKNGYYYEGDVAPGKSPYHEAGLYYIQEPSAMAPVHYLDPKPGEKILDLCAAPGGKST 133 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLV 312 Q + + ++++ R L N++RL + ++ + + FD +LV Sbjct: 134 QIAVRMGGSGILVTNEINRDRARILSLNIERLGITNALVLNETPENLANVFEGYFDKILV 193 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R++ + +++ Q+++L + PGG +VFS C+ + Sbjct: 194 DAPCSGEGMFRKNENASSEWSPENVELCGIRQKEILDAASRMLLPGGRLVFSTCTFAPTE 253 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP--------------------EGW 412 +EE + + L P + + + +S Sbjct: 254 NEESICRFLSGHP-DYHVADIQMFDGMDHGRSEWISDKCIQACGLSQEQESSIRAEVNKS 312 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+ P L G F L R Sbjct: 313 VRLWPHKLRGE--------GHFLCVLER 332 >gi|119913400|ref|XP_594174.3| PREDICTED: NOP2/Sun domain family, member 2 [Bos taurus] Length = 782 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 98/274 (35%), Gaps = 54/274 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 162 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 221 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 RR L RL ++ DA +D +L D PCS GT+ Sbjct: 222 NRRCYLLVHQAKRLGSPCIMVVNHDASCIPRLQVDVNGRKEILFYDRILCDVPCSGDGTM 281 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 282 RKNVDVWKKWSALNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 341 Query: 383 SSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S + + ++ +G +I P M Sbjct: 342 KSEGALELADVSSELPGLKWVPGLSQWKVMTKDGQWFTSWDDVPHNRHTQIRPTMFPPKD 401 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442 +I GFF L + Sbjct: 402 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 435 >gi|50311247|ref|XP_455648.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644784|emb|CAG98356.1| KLLA0F12562p [Kluyveromyces lactis] Length = 704 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 71/361 (19%), Positives = 126/361 (34%), Gaps = 50/361 (13%) Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 ++ + ++ L RI G + + + + + + + L + Sbjct: 55 FKKTCQSQLPLTFRITGSRKHSKEVLQLFQEHHLPNLTNVTWENEVVKPPMALPWYPEHL 114 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 W ++ ++ + +V A G Q+A + IP + + VLD Sbjct: 115 GWQLDVSKSVIRKNEQFARMQRFLVVEN---AVGNISRQEAVSMIPPIVLDVKPHHYVLD 171 Query: 248 LCAAPGGKTAQ--------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 +CAAPG KTAQ V A D +R L L RL+ ++ DA Sbjct: 172 MCAAPGSKTAQLIEALHAESDEPSGFVIANDADYKRSHMLVHQLKRLNSANLMVVNHDAQ 231 Query: 300 DYC-------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + FD VL D PCS GT+R++ +V +T + Q Sbjct: 232 FFPRIKVDSTEGSKGPQFLKFDRVLCDVPCSGDGTMRKNVNVWKDWNTGSGLGLHIVQLN 291 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----- 401 +L +G++ +K GG +V+S CSL+ ++E V+ LR V LV + + Sbjct: 292 ILERGLNLLKEGGKLVYSTCSLNPIENEAVIAAALRRWGDKVRLVNCDDQLPGLVRSKGI 351 Query: 402 ---------------------DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D + E + + ++ GFF + Sbjct: 352 TEWKVYDKQFQVREKGHENCLDSWFPPTAEEVEKFHLENCMRVYQHQQNTGGFFITVFEK 411 Query: 441 L 441 + Sbjct: 412 I 412 >gi|257439633|ref|ZP_05615388.1| NOL1/NOP2/sun family protein [Faecalibacterium prausnitzii A2-165] gi|257197900|gb|EEU96184.1| NOL1/NOP2/sun family protein [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 7/208 (3%) Query: 243 LSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 + VLD CAAPGGK++QL + + + + R E LR NL+R+ + ++ D Sbjct: 1 MRVLDTCAAPGGKSSQLAAALGGQGLLVSNEFVAARAEVLRSNLERMGVPNAVVLNEDTG 60 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 FD VLVDAPCS G R+ + + + A ++L + + P Sbjct: 61 RIAAALPEFFDRVLVDAPCSGEGMFRKEAVAVTQHCEALVKQCAALGAQILDNAAACLAP 120 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +++S C+ ++ E V L+ P L + S + G + + Sbjct: 121 GGEMIYSTCTFAPEEDEGQVAAFLQRHP-EFTLADVFGNVDYSFGSPGEANRTGGLPLDV 179 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + +I G +G F L + P+ Sbjct: 180 SKVRRIWPCQGG-EGHFIARLVKAGTPR 206 >gi|198276920|ref|ZP_03209451.1| hypothetical protein BACPLE_03125 [Bacteroides plebeius DSM 17135] gi|198270445|gb|EDY94715.1| hypothetical protein BACPLE_03125 [Bacteroides plebeius DSM 17135] Length = 470 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 118/303 (38%), Gaps = 16/303 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F R G A+++A + + + D + + + Sbjct: 1 MNLPSDFILRTRQLLGDAEFAALAEALGKDTPVSIRMNTDKSDLVPQESTAVPWCREGYY 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI--- 260 S P F G ++VQ+AS+ Q +++LDLCAAPGGK+ Sbjct: 61 LSGRPSFTFDPLFHAGCYYVQEASSMFLEQALRQYVHEPVTMLDLCAAPGGKSTLARSVL 120 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSST 319 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 PEGSLLVANEVMRNRSQVLAENLIKWGNSGVIVTNNDPADFTELGPLFDVILTDVPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ + +++ QR++L +K GG++V+S C+ +++++E+ V Sbjct: 181 GMFRKDEVAVQEWSIENVDTCWQRQRRILRDIWPCLKTGGLLVYSTCTYNREENEDNVAW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + + E++PL I + + R P G F L+ Sbjct: 241 IAQE--LGAEVLPLEMQPDWHITGNLTGTEFPVYRFLPHKTTGE--------GLFLAVLQ 290 Query: 440 RLI 442 + Sbjct: 291 KTA 293 >gi|317122734|ref|YP_004102737.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter marianensis DSM 12885] gi|315592714|gb|ADU52010.1| RNA methylase, NOL1/NOP2/sun family [Thermaerobacter marianensis DSM 12885] Length = 497 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 84/310 (27%), Positives = 127/310 (40%), Gaps = 25/310 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT--------VKFDIETWAHKLNAVMLP 199 +P ER + S P + + ++ +E +L Sbjct: 1 MPATVFERYRSIIDDWDAFQASLIRPQPAALRVNRLKADPAALRARLEERGFRLEPYDWY 60 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 R+ E P S G +++Q+A+A++PV +VLDL AAPGGK+ Q+ Sbjct: 61 PDLWRVAEEPFSPALTLEHWLGRFYLQEAAAAVPVLALDPQPGETVLDLSAAPGGKSTQM 120 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPC 316 + + V A D RRL L NL RL + + I D + FD VLVDAPC Sbjct: 121 AERMGNRGMVVANDPDPRRLAALSHNLQRLGVTSAVITRADGRQFPGGLAFDRVLVDAPC 180 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S+ G RR + Q LL + ++ V+PGG+VV+S C+ +++E V Sbjct: 181 SAEGNARRSARARQGVGRHQRRRLPAVQLALLRRALALVRPGGVVVYSTCTFAPEENEAV 240 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------EGWIRITPDMLEKIDGVSSGM 430 V +VLR++ V + PL A + E RI P L+ Sbjct: 241 VDQVLRAAEGSVTVEPLPPALPGVAGVTAWEGQRFRPEVEACRRIYPHHLDSG------- 293 Query: 431 DGFFAVALRR 440 G F LR+ Sbjct: 294 -GMFVARLRK 302 >gi|6319447|ref|NP_009529.1| Ncl1p [Saccharomyces cerevisiae S288c] gi|586408|sp|P38205|NCL1_YEAST RecName: Full=tRNA (cytosine-5-)-methyltransferase NCL1; AltName: Full=Multisite-specific tRNA:m5C-methyltransferase; AltName: Full=tRNA methyltransferase 4 gi|536023|emb|CAA84843.1| unnamed protein product [Saccharomyces cerevisiae] gi|602895|emb|CAA54502.1| homolog of human proliferating-cell nucleolar protein p120 [Saccharomyces cerevisiae] gi|285810311|tpg|DAA07096.1| TPA: Ncl1p [Saccharomyces cerevisiae S288c] Length = 684 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 78/396 (19%), Positives = 130/396 (32%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323 Query: 380 VLRSSPIPVELVPLNSAYW----------------------------------KSIDMAM 405 LR + LV + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFSPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|225868633|ref|YP_002744581.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp. zooepidemicus] gi|225701909|emb|CAW99416.1| NOL1/NOP2/sun family protein [Streptococcus equi subsp. zooepidemicus] Length = 435 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 18/222 (8%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ +A + Q+ VLDL AAPGGK+ Q + + + + ++S +R + L Sbjct: 73 VYSQEPAAQMVAQVASPAKGTRVLDLAAAPGGKSTQLLAYLENTGLLVSNEISTKRSKAL 132 Query: 280 RCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R + D + FD ++ D PCS G R+ P+ + D Sbjct: 133 VENIERFGARNVIVTNESADRLAAVFPEYFDTIVFDGPCSGEGMFRKDPNAMSYWHKDYP 192 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 A QR +L + I +KPGG +++S C+ +++EEVV+ +L S +EL + Sbjct: 193 AACASLQRSILAEAIPMLKPGGQLIYSTCTWSPEENEEVVRWLLESY-DFLELEHIPKIN 251 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S + M + R+ P + F L+ Sbjct: 252 GMSEGIGMPQAA----RMYPHRFKGEGQ--------FVAKLK 281 >gi|319957197|ref|YP_004168460.1| RNA methylase, nol1/nop2/sun family [Nitratifractor salsuginis DSM 16511] gi|319419601|gb|ADV46711.1| RNA methylase, NOL1/NOP2/sun family [Nitratifractor salsuginis DSM 16511] Length = 319 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 15/302 (4%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL-- 205 P ER+ + + + L ++E+ ++ AV G RL Sbjct: 22 FPPHIYERVLQSFSSPKTTTFRVNPLKTDASSLQK--ELESLGFEIEAVDWLPGAFRLLD 79 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 + ++ F EG ++Q+ S+ + + VLDL AAPGGKT + + + Sbjct: 80 PDQRRALTESGAFYEGRLYIQNLSSMLAPLILAPRPEEQVLDLAAAPGGKTLMMAGMMEN 139 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 ++A++ K R +L+ N++ D FD VL+DAPCSS Sbjct: 140 RGWISAVEPVKERFHRLKRNIENAGAEIVHTYMKDGRSVGRACPAMFDRVLLDAPCSSEA 199 Query: 321 TIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 +P + +S Q++L+L ++PGG +++S CS +++E VV Sbjct: 200 KFSTLNPKSYAYWSPRKVKESQRLQKRLILSAWQSLRPGGRLLYSTCSFAPEENEAVVDH 259 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE-KIDGVSSGMDGFFAVAL 438 +L +P +L+P+ ++ + + R P++ + + MDGFF + Sbjct: 260 LLGKAP-DAKLLPIELPIDNQMEGLVGWEKK---RFAPELERARRVLPTEEMDGFFLALI 315 Query: 439 RR 440 + Sbjct: 316 EK 317 >gi|207347840|gb|EDZ73889.1| YBL024Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 634 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEAVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|332796458|ref|YP_004457958.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1] gi|332694193|gb|AEE93660.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1] Length = 335 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 130/316 (41%), Gaps = 26/316 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDA---------CISPLYIDLTVKFDIETWAHKL 193 + ++ ER + + E + C + ++ +E KL Sbjct: 27 SRKYGFLDYMVERYLHIFRHEAEDFLYSCNFPLKKSIRCNTLKIDCNELESRMEQKGFKL 86 Query: 194 NAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 V G +K+ P S+ + + +G +++Q ++ +P + ++ +VLD+ AA Sbjct: 87 EKVSWLKHGYIVKKAPPKPSLGATLEYLQGYYYIQGLASMVPAYVLNPSSSDTVLDMAAA 146 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LF 307 PGGKT Q ++ + + A++ S+ R+ L N+ RL + ++ D F Sbjct: 147 PGGKTTQLSQIMNNEGLIVAVEKSRLRVTSLLSNISRLGVRNVLLLRSDVRTLEKTTLSF 206 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L+DAPCS G I D++ + + Q +L+ +K GG +V+S CS Sbjct: 207 DKILLDAPCSGEGLIPEDQSRKTKTSLDELKRFSFTQLQLIYTAYKLLKKGGELVYSTCS 266 Query: 368 LDKQDSEEVVQKVLRSSPIPVELV---PLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 + ++ E +V + + + P + + ++ IR P Sbjct: 267 IAPEEDEMIVNFAIEELGMKAIKISGYPAENGIVEYNGVSFNEEVSNCIRFYPH------ 320 Query: 425 GVSSGMDGFFAVALRR 440 +G +GFF L++ Sbjct: 321 --KNGTEGFFICHLKK 334 >gi|322784282|gb|EFZ11287.1| hypothetical protein SINV_03590 [Solenopsis invicta] Length = 718 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 113/323 (34%), Gaps = 52/323 (16%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 ++ + L + W +L + + I G Q+ Sbjct: 112 NSQTKTILHSLPFYPEELAWQLQLTRKDIRRSEAYFRLHNFLIAET---NNGSISRQEVV 168 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKRRLEKL 279 + +P + + VLD+CAAPG KTAQLI V A D+ R L Sbjct: 169 SMVPPLVLNVKPSHKVLDMCAAPGSKTAQLIEMIHADEGNDPPEGFVIANDLDNTRCYML 228 Query: 280 RCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDV 328 RL+ I DA FD +L D PCS GT+R++PD+ Sbjct: 229 VHQAKRLNSPNILITNHDASVMPNFMITKPDGTKDILKFDRILADVPCSGDGTMRKNPDI 288 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + Q ++ +G+ + GG +V+S CSL+ ++E V+ ++L + V Sbjct: 289 WCKWSPANGNNLHGVQYRIAKRGLELLTVGGRMVYSTCSLNPIENEAVLHRLLCETNDSV 348 Query: 389 ELVPLNSAYWKSI-----------------DMAMALSPEGWI-RITPDMLE--------- 421 +LV + + PE W ++ P M Sbjct: 349 QLVDCRDLVPGLLCDSGITHWKPTSKNLQYYNSWDDVPEQWQTQVRPKMFPPEANEASNM 408 Query: 422 KIDGVSSGMDGFFAVALRRLIQP 444 +I GFF L ++ +P Sbjct: 409 RILPHHQDTGGFFVAVLEKV-KP 430 >gi|170593001|ref|XP_001901253.1| Helicase conserved C-terminal domain containing protein [Brugia malayi] gi|158591320|gb|EDP29933.1| Helicase conserved C-terminal domain containing protein [Brugia malayi] Length = 1209 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 131/391 (33%), Gaps = 81/391 (20%) Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 N + S+ ++ + A I+ + + ++ + S + + Sbjct: 35 ENFCIYYKSQGIVKDDEWDAFIAALKDDLPTSFRIQGSSNEAQSLIELMNSHYFEPMKQW 94 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASI 232 D +T+ K + + ++ S P Q+A + I Sbjct: 95 EDGDTFIPK--QLSWHPYAFQTPISRATLRSRPLLKNFHNFLITEAELGNISRQEAVSMI 152 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKRRLEK-LRCNL 283 P L ++ +LD+CAAPG KT Q+I A DV R + L Sbjct: 153 PPLLLDIKSHHKILDVCAAPGSKTTQIIEMMHCDDKIPEGLIVANDVDNSRCYLLVHQAL 212 Query: 284 DRLHLYAEDIIEMDAFDYC---------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 R+ +I +A LFD VL D CS GT R+ PD+ + + Sbjct: 213 KRMPTSNCIVINENAAFLPNLLIDKETSEPLLFDRVLCDVICSGDGTFRKSPDMWQSWNP 272 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL- 393 + Q + + + + G++V+S CSL+ ++E V+ +LRS+ +EL+ + Sbjct: 273 VKGLGLHKLQINIAQRAVQLLAVDGLMVYSTCSLNPIENEAVIASLLRSNAGALELIDVS 332 Query: 394 ----------------------------------------NSAYWKSIDMAMALSPEGWI 413 +S + + D E Sbjct: 333 QQLPQLKRMSGLSKWRVFDKAMREYSILEDVIADQRRYFTSSMFPPNDDEIRNFHLERCF 392 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 RI P + GFF LR+L +P Sbjct: 393 RILPHLQ--------NTGGFFVAVLRKL-KP 414 >gi|323349882|gb|EGA84095.1| Ncl1p [Saccharomyces cerevisiae Lalvin QA23] Length = 682 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEXVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|322372966|ref|ZP_08047502.1| NOL1/NOP2/sun family protein [Streptococcus sp. C150] gi|321278008|gb|EFX55077.1| NOL1/NOP2/sun family protein [Streptococcus sp. C150] Length = 446 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 117/317 (36%), Gaps = 25/317 (7%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 + P F E+ N GKE + + + +A Sbjct: 1 MVQFFNRKETMEFPLDFVEKYTNLLGKE-ADNFFASFDQEAVSAYRTNPLKKQQKNYPDA 59 Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + G K A G+ + Q+ +A + Q+ VLDL AAPGGK Sbjct: 60 IPETPWGHYGKIS----GKSSDHATGLVYSQEPAAQMVAQVAAPTKGSRVLDLAAAPGGK 115 Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAV 310 + + + + + +++ +R + L N++R + D K FD + Sbjct: 116 STHLLSYLDNTGLLVSNEINPKRSKILVENIERFGARNVVVTNTSADKLAKVFKNYFDTI 175 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 + D PCS G R+ PD + D + A Q+ +L G+ + PGG +++S C+ Sbjct: 176 VFDGPCSGEGMFRKDPDAIQYWHKDYPSELAQLQKDILTDGLKMLAPGGQLIYSTCTWSP 235 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 +++E VV +L + P +ELV + + + R+ P + Sbjct: 236 EENEGVVSWILENYP-DLELVDIPKQNGMCHGINFPETA----RMYPHHFKGEGQ----- 285 Query: 431 DGFFAVAL--RRLIQPK 445 F +RL + K Sbjct: 286 ---FVAKFQDQRLTEQK 299 >gi|317503695|ref|ZP_07961712.1| NOL1/NOP2/sun family protein [Prevotella salivae DSM 15606] gi|315665216|gb|EFV04866.1| NOL1/NOP2/sun family protein [Prevotella salivae DSM 15606] Length = 428 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 111/305 (36%), Gaps = 21/305 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201 +P+ F G+ A +A + + + + + + Sbjct: 1 MKLPKEFTAYTRELMGETCFTAFENAMNEDVPVSIRLNPFKLDSTQVSIKDKETDVPWCR 60 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGKTAQL 259 + + P F +G+++VQ+ ++ + + +LDLCA+PGGK+ Sbjct: 61 DAMFLKSRPNFTFDPFFHQGLYYVQETASMFVAHVIREVVKRPIRMLDLCASPGGKSTCS 120 Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAP 315 +G+ + + + ++R L N+ + + + + FD +L D P Sbjct: 121 YAALPAGSMLFSNEPIRQRANILNENILKFGVPDIVVTNNYARDYQQSRLQFDVILTDVP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + + + A Q +++ +KPGG++++S C+ + ++EE Sbjct: 181 CSGEGMFRKDAGAIDDWSVKKVEECARLQCEIVHDIWPCLKPGGVLIYSTCTFNAHENEE 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V + + +P A+ + + R P G F Sbjct: 241 NVAWIAKELGADFIEIPTEKAWNIT---GSLVDEHPVYRFIPGRTRGE--------GLFM 289 Query: 436 VALRR 440 LR+ Sbjct: 290 AVLRK 294 >gi|163752559|ref|ZP_02159743.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99] gi|161327555|gb|EDP98755.1| NOL1/NOP2/sun family protein [Shewanella benthica KT99] Length = 491 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 68/265 (25%), Positives = 122/265 (46%), Gaps = 27/265 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAP 252 G + + + +G++++Q+AS+ +P + +N ++LD+ AAP Sbjct: 78 WCSDGFWISLDSEVQLGNTIEHLQGLFYIQEASSMLPPTALFSQLNETDNATILDMAAAP 137 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307 G KT QL + + + A + S R++ L N+ R+ + + DA + F Sbjct: 138 GSKTTQLAALMNNSGLLIANEYSSSRVKVLHANVQRMGVSNTALTHFDARVFGEYLYATF 197 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DA+L+DAPCS GTIR+ P L + Q+ L+ +K GGI+V+S C+ Sbjct: 198 DAILLDAPCSGEGTIRKDPAALKNWSLESSRSIVATQKALIESAFLALKTGGILVYSTCA 257 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L + +++EV Q + P VE L + ID A + EG++ + P + + Sbjct: 258 LSRVENQEVCQHLKEMYPDAVEFESLRDLF---IDADKACTEEGFLHVWPQIYDSE---- 310 Query: 428 SGMDGFFAVALRR-------LIQPK 445 GFF +R+ + +P+ Sbjct: 311 ----GFFVAKIRKTADIDRQVAEPR 331 >gi|330833874|ref|YP_004408602.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4] gi|329566013|gb|AEB94118.1| ribosomal RNA methyltransferase NOP2 [Metallosphaera cuprina Ar-4] Length = 336 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 137/338 (40%), Gaps = 26/338 (7%) Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACISPLYI 178 + L N+ S E + + +A E+ ER +F E L+ + Sbjct: 6 SYLKNNEASLYSYEIEDGITELAKKYGFLEYMIERYIHFLGSKTEEFLSSCTFPLRKAIR 65 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQDAS 229 ++K D +T + L I + + P + +G +++Q + Sbjct: 66 CNSLKIDCKTLSENLENKGFTLSRIEWSKFGYRVEKSPSTPSIGSTIEYMKGQYYIQGEA 125 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 + IP + VLD+ ++PGGKT + + + + AL+ + RL+K+R N+ RL Sbjct: 126 SMIPPEALSPKEGELVLDMASSPGGKTTHIAQLMNNSGSIIALESNPARLKKIRSNIARL 185 Query: 287 HLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + ++ + + FD +L+DAPCS G I DD+ + Q Sbjct: 186 GVTNVILLLLRGEEVSKLGLTFDKILLDAPCSGEGLIPIDKTRKTKTLPDDLKRFQRTQL 245 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV---PLNSAYWKSID 402 LL+ G +K G++V+S CS+ ++ E +V ++ + E++ P Sbjct: 246 NLLVTGYKVLKKNGLMVYSTCSIAPEEDEVIVNFAIKYLGMRAEMITGFPGERGLSSYKG 305 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + +R P + M+GFF LR+ Sbjct: 306 IEFSEGIQNCLRTYPHTQK--------MEGFFVCLLRK 335 >gi|213405086|ref|XP_002173315.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces japonicus yFS275] gi|212001362|gb|EEB07022.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces japonicus yFS275] Length = 682 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 70/400 (17%), Positives = 133/400 (33%), Gaps = 68/400 (17%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 + + ++ + +L ++++ RI+G K+ E +Y + Sbjct: 30 ESYYAVQNLFAHKESPEQEYKLLIEFMKKQLPTTFRISGFRKHAVELKKHFEKYYVPDLQ 89 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + P L+ D + + + + G Sbjct: 90 NVTYEGQNIPPPQVLSWYPDDLAYMIDARKETIRKSPPLKRLQRFLVCETEA---GNISR 146 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--------------------IVSGAK 265 Q+A + +P + VLD+CAAPG KTAQL Sbjct: 147 QEAVSMLPPLFLDFEPHHVVLDMCAAPGSKTAQLIEAIYKGANVIDATKDSAKLHNISGL 206 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVL 311 V A D +R + L ++RL+ +I DA FD +L Sbjct: 207 VIANDADPKRAQMLVHQINRLNSPNVLVINHDASQMPNIYVEKKEAADGEKEILKFDRIL 266 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT R++ + + Q K+L++G+ +K GG++ +S CS++ Sbjct: 267 ADVPCSGDGTFRKNLMLWKEWSQSSALTLHNLQLKILMRGLQMLKVGGVLAYSTCSMNPI 326 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA--------------------MALSPEG 411 ++E VV L+S V+L+ ++ + + A + + Sbjct: 327 ENESVVAAALKSCGGSVQLLDVSDKMPELLREPGLCNWKVMDEQLKQYAEYNDDAKAAKL 386 Query: 412 WIRITP-----------DMLEKIDGVSSGMDGFFAVALRR 440 + P + ++ GFF L++ Sbjct: 387 CPTMWPLPINEMKEYHMERCVRLYPQLQNTGGFFIALLQK 426 >gi|323261753|gb|EGA45324.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 337 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 13/246 (5%) Query: 189 WAHKLNAVMLPTGGIRLKELPE---SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNL 243 + L + G ++ E + S G++++Q+AS+ +PV + Sbjct: 94 YGWSLTPIPWCHEGFWIERDDEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADDNHPQ 153 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D+ AAPG KT Q + + + A + S R++ L N+ R + + D Sbjct: 154 RVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHANISRCGIANTALTHFDGRV 213 Query: 301 YCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 + FDA+L+DAPCS G +R+ PD L + + A QR+LL ++PG Sbjct: 214 FGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDNAFHALRPG 273 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 G +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 274 GTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFPQ 330 Query: 419 MLEKID 424 + + Sbjct: 331 IYDCEG 336 >gi|329942384|ref|ZP_08291194.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci Cal10] gi|332287026|ref|YP_004421927.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci 6BC] gi|313847622|emb|CBY16610.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506907|gb|ADZ18545.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci 6BC] gi|328815294|gb|EGF85282.1| NOL1/NOP2/sun family protein [Chlamydophila psittaci Cal10] gi|328914257|gb|AEB55090.1| NOL1/NOP2/sun family protein, putative [Chlamydophila psittaci 6BC] Length = 371 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 80/424 (18%), Positives = 133/424 (31%), Gaps = 82/424 (19%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 + + + R L +D+ + A V LR ++A++ Sbjct: 19 TPIGEVNRVALYFKQHRSLGSKDRQWISARVFAILRHRRLLEALIQR------------- 65 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 ++ +V E A + + Sbjct: 66 -----------DNQEITPETLVAKVEEGA-------------------LDDIEKYHDLPW 95 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 + + L YG+ER +++ + + V + + P+ Sbjct: 96 PVKYSVSDDLATCLTEDYGQERAKELAEIFLKEAPCTIRVNTRRTSVEDLQKCLEYPSEL 155 Query: 203 IRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + + F G++ VQD S+ +LD CA GGK+ Sbjct: 156 GSVPGALRFAKRYPLQHSAAFHRGLFEVQDESSQKITLDIPISKKDRILDFCAGAGGKSL 215 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 V D K LE+ + L R I E K F V+VDAPC+ Sbjct: 216 IFAERAHHVVLHDSRKDILEEAKQRLRRAGFRNFSIGEQHLR----KNSFSIVVVDAPCT 271 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 TG RRHP+ + +C QRK+L + +VKPGG +V+ CSL +++E+ V Sbjct: 272 GTGVYRRHPEKKSQFSRKLLTTFSCVQRKILRDAVRYVKPGGKLVYITCSLLSEENEKQV 331 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +NS W+ + SG DGFF+ Sbjct: 332 AF-------------MNSLGWEEA----------------HRMHTTLSPESG-DGFFSAH 361 Query: 438 LRRL 441 R Sbjct: 362 FVRK 365 >gi|151946371|gb|EDN64593.1| m5C tRNA methyltransferase [Saccharomyces cerevisiae YJM789] Length = 682 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENESVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|213401679|ref|XP_002171612.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces japonicus yFS275] gi|211999659|gb|EEB05319.1| tRNA (cytosine-5-)-methyltransferase ncl1 [Schizosaccharomyces japonicus yFS275] Length = 654 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 99/286 (34%), Gaps = 64/286 (22%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV------------ 266 G Q+A + IP + VLD+CAAPG KTAQLI + + Sbjct: 95 ECGDISRQEAVSMIPPLFLDVKPHHKVLDMCAAPGSKTAQLIEALHRDSNVESPEKDIVP 154 Query: 267 ----TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---------------LF 307 A D RR L + RL+ I DA F Sbjct: 155 SGLVIANDADSRRAHMLVHQIKRLNSPNVVITNHDASYMPNFHMMTEGKTGEAKRVNLKF 214 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT R++ + + Q K+LL+G+ + GG +V+S CS Sbjct: 215 DRILADVPCSGDGTFRKNISLWKEWTLKTALGLHATQVKILLRGLQMLATGGRLVYSTCS 274 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS---PEGWI----------- 413 ++ ++E VV +L+++ V LV + + +G + Sbjct: 275 MNPIENEAVVSAILKATEGSVRLVDTSKELPSLVRNPGVFDWKVMDGDLNEYKSFEELPS 334 Query: 414 --------RITP-----------DMLEKIDGVSSGMDGFFAVALRR 440 + P + ++ GFF L + Sbjct: 335 NLIQRMPKTLWPLPKSELERLHIERCMRVYPHQQNTGGFFVAVLEK 380 >gi|294141339|ref|YP_003557317.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12] gi|293327808|dbj|BAJ02539.1| NOL1/NOP2/sun family protein [Shewanella violacea DSS12] Length = 478 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 20/255 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAP 252 G + + + +G++++Q+AS+ +P + N+++LD+ +AP Sbjct: 65 WCSDGFWISLDSEVQLGNTIEHLQGLFYIQEASSMLPPTALFSQLNETANVTILDMASAP 124 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307 G KT QL + + + A + S R++ L N+ R+ + + DA + F Sbjct: 125 GSKTTQLAALMNNSGLLIANEYSSSRVKVLHANVQRMGVTNTALTHFDARVFGEYLYDTF 184 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DA+L+DAPCS GTIR+ P L Q+ L+ +K GG +V+S C+ Sbjct: 185 DAILLDAPCSGEGTIRKDPSALKNWSLKSSQAIVATQKALIESAFLALKTGGTLVYSTCA 244 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L + +++EV Q + P VE L+ + ID A + EG++ + P + + Sbjct: 245 LSRFENQEVCQHLQAIYPDAVEFESLSDLF---IDADKACTEEGFLHVWPQIYDSE---- 297 Query: 428 SGMDGFFAVALRRLI 442 GFF +R+ Sbjct: 298 ----GFFVAKIRKTA 308 >gi|291300071|ref|YP_003511349.1| Fmu (Sun) domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290569291|gb|ADD42256.1| Fmu (Sun) domain protein [Stackebrandtia nassauensis DSM 44728] Length = 532 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 14/164 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R ++ +L+ V + +L R +S RD + TLR +DA Sbjct: 27 NPRRIAYEVLAAVSTQDAYANLVLPKLLRH---RGVSGRDAAFATELSYGTLRRRGSLDA 83 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ ++ S+ +LR+ V Q+LY VA +A + V A++ +R A VN Sbjct: 84 VIASASGRAVSALDQSVADVLRLGVYQLLYTRVAAHAAANTTVSLARKVCGHRP-AGFVN 142 Query: 126 SILRRVSREKIELLQRI----------AGISIIPEWFKERLENF 159 +++R+VSR +E A PEW R Sbjct: 143 AVMRKVSRYSLEDWLDKLSTGEELADLALRQSHPEWIVRRFAEA 186 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 107/294 (36%), Gaps = 30/294 (10%) Query: 158 NFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPTGGIRLKELPESIVS 214 + ++A A + L + D A + + + ++ Sbjct: 257 AEAEPDELVAALAADNVSPAVQLCARPGLIDATELARQTDGSLGRWSAYAVELDSGDPGD 316 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTL----NNLSVLDLCAAPGGKT----AQLIVSGAKV 266 L +G VQD + + + LDLCA PGGK + AK+ Sbjct: 317 LAAIRDGRAHVQDEGSQLVALALAAAPLTGRDERWLDLCAGPGGKAALLGSLAARRDAKL 376 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 TA++V++ R + L D++ D Y FD VLVDAPCS G +RR P Sbjct: 377 TAVEVAEHRARLVAETTKDL---DVDVVTADGRTYTTSDSFDRVLVDAPCSGLGALRRRP 433 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + W R D+ Q +LL + V+PGG+V + CS ++ E+V Sbjct: 434 EARWRRAESDLDGLRELQTELLASALRLVRPGGVVAYVTCSPVIAETHEIVATA-----T 488 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LV + + L +++ P G D F LRR Sbjct: 489 GASLVDARPLFPAELP---HLGDGPTVQLWPH--------RHGTDAMFCAILRR 531 >gi|259144822|emb|CAY77761.1| Ncl1p [Saccharomyces cerevisiae EC1118] Length = 682 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 133/396 (33%), Gaps = 65/396 (16%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K K F + ++ + + L RI G + Sbjct: 27 WSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNLFKER 86 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + ++L D W + ++ K +V A Sbjct: 87 HLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KTAQ V A D Sbjct: 144 VGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVVANDA 203 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + FD +L D PCS Sbjct: 204 DARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVPCSGD 263 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ +K G +V+S CSL+ ++E VV + Sbjct: 264 GTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENESVVAE 323 Query: 380 VLRSSPIPVELVP----------------------------------LNSAYWKSIDMAM 405 LR + LV L+S + S + A Sbjct: 324 ALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSEEEAS 383 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R+ P GFF ++ Sbjct: 384 KFNLQNCMRVYPH--------QQNTGGFFITVFEKV 411 >gi|323356262|gb|EGA88066.1| Ncl1p [Saccharomyces cerevisiae VL3] Length = 664 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 133/400 (33%), Gaps = 65/400 (16%) Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155 L +V + K K F + ++ + + L RI G Sbjct: 5 LKKNWSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAPLPLTFRITGSRKHAGEVLNL 64 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215 + + + ++L D W + ++ K +V Sbjct: 65 FKERHLPNLTNVEFEGEKIKAPVELPWYPDHLAWQLDVPKTVIRKNEQFAKTQRFLVVEN 124 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVT 267 A G Q+A + IP + + +VLD+CAAPG KTAQ V Sbjct: 125 ---AVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFVV 181 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAP 315 A D RR L L RL+ ++ DA + FD +L D P Sbjct: 182 ANDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDVP 241 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS GT+R+ +V +T + Q +L +G+ +K G +V+S CSL+ ++E Sbjct: 242 CSGDGTMRKXVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENEA 301 Query: 376 VVQKVLRSSPIPVELVP----------------------------------LNSAYWKSI 401 VV + LR + LV L+S + S Sbjct: 302 VVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFPPSE 361 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A + + +R+ P GFF ++ Sbjct: 362 EEASKFNLQNCMRVYPH--------QQNTGGFFITVFEKV 393 >gi|315924869|ref|ZP_07921086.1| NOL1/NOP2/sun family protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621768|gb|EFV01732.1| NOL1/NOP2/sun family protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 467 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 71/310 (22%), Positives = 128/310 (41%), Gaps = 22/310 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDL------TVKFDIETWAHKLNAVMLP 199 +PE F +++ G E A++D+ Y + + + + Sbjct: 1 MNLPEAFSDKMRTLMGSEAFAALADSYNRSAYKGIRTNTLKMDNGRMRSLFPFETKAVPW 60 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 G+ G+++VQ+ +A P + G VLDLCAAPGGK+ QL Sbjct: 61 CPTGFYIGGDVRPGKQVGYYAGLYYVQEPTAMTPAEALGAEPGDRVLDLCAAPGGKSTQL 120 Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDA 314 + + ++ K R L N++R+ + I+ D F+ +LVDA Sbjct: 121 ACKLNGRGVLISNEIVKSRSAVLASNMERMGIANSVILSAAPDKLMAGFTGYFNKILVDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ PDVL + +++ A Q ++L + PGG +V+S C+ +++E Sbjct: 181 PCSGEGMFRKDPDVLAEWQPERVIQCAARQWEILKTVDQLLAPGGELVYSTCTFSPEENE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMD 431 ++V++++ + V + L A G +RI P+ + Sbjct: 241 QIVERLIATDRYEVVPLALPGLADHGRPEWAATGERRVAGTLRIMPNHVAGE-------- 292 Query: 432 GFFAVALRRL 441 G F +R+L Sbjct: 293 GHFVAKMRKL 302 >gi|300361826|ref|ZP_07058003.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri JV-V03] gi|300354445|gb|EFJ70316.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri JV-V03] Length = 463 Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 113/302 (37%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F ++ +N G+E A S + + ++ P Sbjct: 1 MSLPVEFIKKYQNLLGEEESNKFFAAIDSSSKKGFRLNPLKNNYHDVQYSLADPIEFTSD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 + G + QD SA P VLDLCAAPGGK+ + + Sbjct: 61 GYYGGISGRDSEWTSGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLEN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTG 320 + A ++SK R + LR NL+R + K FD +LVDAPCS G Sbjct: 121 KGLLVANEISKSRAKDLRENLERWGATNVVVTNESPERLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P + + ++ Q+++L Q + +K GG +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAAMQYWSPEYVLTCQARQKEILTQAMKMLKAGGELVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + +E L P S + E +R+ F Sbjct: 241 VENYHLKIEPLKLYPGMSMGKSDWSKSNLPELEDTVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 LR Sbjct: 293 LR 294 >gi|303283998|ref|XP_003061290.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457641|gb|EEH54940.1| predicted protein [Micromonas pusilla CCMP1545] Length = 714 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 110/330 (33%), Gaps = 51/330 (15%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 + D W + L+ + E + + G Sbjct: 122 AAAECEPTEPEVKPPTAVRWYPDRLAW-QFNYSRQQLRRLPHLESIHEFVKRANEY--GS 178 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------------KVTALD 270 Q+ + IP + VLD+CAAPG KT QL+ V A D Sbjct: 179 ITRQEVVSMIPAFFLKIEPHHLVLDMCAAPGSKTFQLLEMLHGGLNDPQALPEGFVVAND 238 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-------KLFDAVLVDAPCSSTGTIR 323 V +R L R++ + +A ++ FD++L D PCS GT+R Sbjct: 239 VDIKRCNLLTHQTKRVNSPGLLVTNHEAQNFPEIKSMGGRTFPFDSILCDVPCSGDGTMR 298 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + PD+ + Q K+ ++ +K GG +V+S C+ + + E VV +L+ Sbjct: 299 KAPDIWPRWTVGNGNGLHPLQLKIAMRAAHLLKIGGRLVYSTCTFNPIEDEAVVAAMLKQ 358 Query: 384 SPIPVELVPLNSAYWKSIDMAMALS---------------PEGWIRITPDML-------- 420 S +ELV ++ + + PEG + P M Sbjct: 359 SDGALELVDMSGEMPNLRRVPGVKTWQAWDKHGKHDAEGRPEGPFKCHPTMFSDAESDAL 418 Query: 421 -----EKIDGVSSGMDGFFAVAL-RRLIQP 444 ++ GFF ++ P Sbjct: 419 PLERCMRVLPHQDDTGGFFIAVFDKKREMP 448 >gi|301336155|ref|NP_001180384.1| tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2 [Homo sapiens] gi|119628510|gb|EAX08105.1| NOL1/NOP2/Sun domain family, member 2, isoform CRA_a [Homo sapiens] gi|194386528|dbj|BAG61074.1| unnamed protein product [Homo sapiens] Length = 732 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 133/401 (33%), Gaps = 72/401 (17%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 E R A + +E + I+PE + + Sbjct: 17 EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + L I ++ E H + + L++ + +VS G Sbjct: 70 --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPHLEKFHQFLVS--ETESGNISR 125 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275 Q+A + IP L + +LD+CAAPG KT + V A DV +R Sbjct: 126 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325 L RL ++ DA +D +L D PCS GT+R++ Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L S Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305 Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421 +EL +++ I ++ +G +I P M Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEK 365 Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406 >gi|255691307|ref|ZP_05414982.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides finegoldii DSM 17565] gi|260622949|gb|EEX45820.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides finegoldii DSM 17565] Length = 505 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 119/309 (38%), Gaps = 16/309 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + + G+E ++ A + + + + + + Sbjct: 1 MELPASFVDYTRSLLGEEEYEKLAVALQQEPPVSIRFNNEKWKVQDEGLSAVHSPFDRVP 60 Query: 206 KELPE-------SIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKT 256 + P F G ++VQ+AS+ Q +LDLCAAPGGK+ Sbjct: 61 WSSEGVYLDERLTFTFDPLFHAGCFYVQEASSMFVEQALRQYIKEPAIMLDLCAAPGGKS 120 Query: 257 AQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLV 312 G+ + A +V + R + L NL + + D D+ FD +L Sbjct: 121 THARSVLPEGSLLVANEVIRNRSQVLAENLAKWGHPDVVVTNNDPADFSALPSFFDVILT 180 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ Sbjct: 181 DVPCSGEGMFRKDPVAIEEWTPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTFNTKE 240 Query: 373 SEEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 EE V+ + EL+PL W + G + + + + + Sbjct: 241 DEENVRWI--QQEFGAELLPLEVREEWNITGNLLKDESTGTVHLEGIPVYHFFPHKTKGE 298 Query: 432 GFFAVALRR 440 GFF LR+ Sbjct: 299 GFFLAVLRK 307 >gi|19114101|ref|NP_593189.1| tRNA (cytosine-5-)-methyltransferase (predicted) [Schizosaccharomyces pombe 972h-] gi|74581924|sp|O13935|YF6H_SCHPO RecName: Full=Putative tRNA (cytosine-5-)-methyltransferase C23C4.17 gi|2465159|emb|CAB16888.1| tRNA (cytosine-5-)-methyltransferase (predicted) [Schizosaccharomyces pombe] Length = 674 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 126/400 (31%), Gaps = 74/400 (18%) Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 K+ R R+ + RI G K E +Y + + Sbjct: 33 KKQNLFRGKPNDEFDSFMEYMRKPLPTTFRICGYRHHAFELKNHFEKYYVPSLKNVVHEG 92 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 P L D + ++ + + G Q+A + Sbjct: 93 QTIPPPTVLPWYPDGLAYIVDAQKDVIRKSPPLKRLQRFLVSENEA---GNINRQEAVSM 149 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--------------------SGAKVTALDV 271 +P + +LD+CAAPG KTAQLI V A D Sbjct: 150 LPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDA 209 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------------------LFDAVLV 312 +R + L ++RL+ ++ DA FD +L Sbjct: 210 DPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILA 269 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT R++ + + Q ++L++G+ +K GG +V+S CS++ + Sbjct: 270 DVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIE 329 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYW--------------------------------KS 400 +E VV L+++ V LV ++ + Sbjct: 330 NEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSPAENTNDKIEL 389 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L E ++ + ++ GFF L++ Sbjct: 390 TESMWPLPEEEMSKLHIERCARLYPHMQNTGGFFVAVLQK 429 >gi|254487464|ref|ZP_05100669.1| ribosomal RNA small subunit methyltransferase B [Roseobacter sp. GAI101] gi|214044333|gb|EEB84971.1| ribosomal RNA small subunit methyltransferase B [Roseobacter sp. GAI101] Length = 125 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 7/130 (5%) Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 ++DAPCS+TGTIRRHPD+ +D + + Q +L+ S + PGG +VF CSL Sbjct: 1 MLDAPCSATGTIRRHPDLPHAKDGSEFGELIELQAELIDHAWSLLNPGGRLVFCTCSLLP 60 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 + E V + L V ++ ID +S EG +R+ PD + GM Sbjct: 61 DEGEVQVDEALERHSDMS--VDQSALSVPGID-PSWISSEGGLRLRPDYWADL----GGM 113 Query: 431 DGFFAVALRR 440 DGF+ LR+ Sbjct: 114 DGFYIACLRK 123 >gi|119945884|ref|YP_943564.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Psychromonas ingrahamii 37] gi|146325697|sp|A1SWV0|RSMF_PSYIN RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|119864488|gb|ABM03965.1| putative RNA methylase, NOL1/NOP2/sun family protein [Psychromonas ingrahamii 37] Length = 481 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 24/260 (9%) Query: 193 LNAVMLPTGGIR--LKELPESIVSLPGFAEGVWWVQDASASIP----VQLFGTLNNLSVL 246 L A+ G L+E P + + G+ ++Q+AS+ +P F VL Sbjct: 63 LTAIPWCAEGFWIELQEEPTPLGNSAEHLGGLCYIQEASSMLPVAALFHFFTPTTQSIVL 122 Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D AAPG KT Q + + + + S R++ L N+ R + + DA + Sbjct: 123 DAAAAPGSKTTQIAAKMNNSGLIIGNEFSSSRIKMLHANIQRCGIKNVALTHFDARVFGK 182 Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FDA+L+DAPCS GT+R+ + I + A Q++L+L +K GI+ Sbjct: 183 WLPGTFDAILLDAPCSGEGTVRKDKYAMNNWSQSSINEIASTQQELILSAFHALKEDGIL 242 Query: 362 VFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 ++S C+L +++++ + L+ P +E + L + + D + EG++ I P + Sbjct: 243 IYSTCTLSHEENQD-ICFFLKDKFPEHIEFLDLETLF---TDAKKTRTAEGFLHIWPQVY 298 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + GFF A+++ Sbjct: 299 DSE--------GFFVAAIKK 310 >gi|156375011|ref|XP_001629876.1| predicted protein [Nematostella vectensis] gi|156216886|gb|EDO37813.1| predicted protein [Nematostella vectensis] Length = 491 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 28/251 (11%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 SL G V ++Q+ +++ + G + SVLD+CAAPGGKT + + + + A D Sbjct: 244 SLSGVLTDVLFLQNLPSAVVGHILGPQSGESVLDMCAAPGGKTCHIAALMKNKGLIVAFD 303 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD------------------AFDYCPKKLFDAVLV 312 S+ +++K+ N + + +D P + FD +L+ Sbjct: 304 KSQPKIQKIIANCEMQKVSIVKTHVIDASKALDTKAAPSSRDVSTTSPPYPPEAFDRILL 363 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS+ G + P + ++ QRK+ + ++PGG +V+S C++ ++ Sbjct: 364 DAPCSALG---QRPQSVVHMKLKELQSFPKLQRKIFSSAVGLLRPGGTLVYSTCTITPEE 420 Query: 373 SEEVVQKVLRSSPIPVELVP--LNSAYWKSIDMAMALSPEGWI-RITPDMLEKIDGVSSG 429 +E+ V LRS P + LVP + D ++ G + R P Sbjct: 421 NEKQVAWALRSFPG-LRLVPQVPHLGGPGFPDCGLSDHDRGLVQRFDPTRSSVEPCCDVD 479 Query: 430 MDGFFAVALRR 440 GFF + Sbjct: 480 TIGFFIAKFVK 490 >gi|291536578|emb|CBL09690.1| tRNA and rRNA cytosine-C5-methylases [Roseburia intestinalis M50/1] Length = 493 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 98/268 (36%), Gaps = 26/268 (9%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG----------TLNNLSVLDL 248 E ++ P GV+++Q+ SA PV +LDL Sbjct: 58 WAKDGFYYEKDDTPGKHPLHEAGVYYIQEPSAMAPVSYLMEDYDVVQKEAADCQERILDL 117 Query: 249 CAAPGGKTAQ------------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 CAAPGGK+ Q + ++ R + L N++R+ + + Sbjct: 118 CAAPGGKSTQIAARMHEMYTSGKWKEQGLLICNEIHPARAKILSENVERMGIANAMVTNE 177 Query: 297 DAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + F +LVDAPCS G R++ +++ A Q +L S Sbjct: 178 TPQRLAEMFEDYFTRILVDAPCSGEGMFRKNEAACEEWSPENVSLCAERQDGILDCAASM 237 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 + PGG +V+S C+ ++E + + L P + + + A E + Sbjct: 238 LAPGGRIVYSTCTFAPAENEGSMARFLLRHPEFHIVEVKKAEGMSAGVPEWAYFGEKMGQ 297 Query: 415 ITPDMLE--KIDGVSSGMDGFFAVALRR 440 I P++ + ++ +G + L + Sbjct: 298 ILPEIAQTIRLWPQHLKGEGHYLAVLEK 325 >gi|154335609|ref|XP_001564043.1| methyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061074|emb|CAM38095.1| putative methyltransferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 837 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 124/341 (36%), Gaps = 46/341 (13%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYI--DLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 EW L + + + I + DI + A +G Sbjct: 193 EWAAFVQCMATPLPMTLRLHHSERALATIATRVLTTPDIAAVVRPVAAFPSNSGLYSCSN 252 Query: 208 LPESIVSLPGFAEG------VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----- 256 + + Q+ ++IPV + + +V+DLCAAPG KT Sbjct: 253 NDYHSHTRAEYVCRTLHSASAVSFQEVVSAIPVSVLDVQPHHTVVDLCAAPGSKTLQALD 312 Query: 257 ------AQLIVSGAKVTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC------- 302 V + A + + + + L L R H D + Sbjct: 313 AMLSGGWSGDVCRGVLIANEKDRVKATQTLPARLKRYHAPNVMTTRCDGTQWPRLYLDDP 372 Query: 303 -------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ FD ++ D PCS GTIR+ + T + QR LL +G+ + Sbjct: 373 TNPNSEPQERQFDRIICDVPCSGDGTIRKERSIATTWSASYVKSLVPTQRALLCRGLDLL 432 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY------WKSIDMAMALSP 409 GGI+V+S CS++ ++ EEV+ L VEL+ +N +SI + + Sbjct: 433 ATGGILVYSTCSMNPKEDEEVICAGLEIFSDSVELIDINVTLQQKGFHLRSIGGIRSPNL 492 Query: 410 EGWIR-ITP-----DMLEKIDGVSSGMDGFFAVALRRLIQP 444 EG R + P + + ++ GFF ALR++ QP Sbjct: 493 EGLQRPVLPPTYDGNRVLRVLPHRDDTGGFFVAALRKVKQP 533 >gi|260772859|ref|ZP_05881775.1| ribosomal RNA small subunit methyltransferase F [Vibrio metschnikovii CIP 69.14] gi|260611998|gb|EEX37201.1| ribosomal RNA small subunit methyltransferase F [Vibrio metschnikovii CIP 69.14] Length = 473 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 61/271 (22%), Positives = 119/271 (43%), Gaps = 21/271 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRL--KELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 + L + G + E + + G++++Q+AS+ +PV Sbjct: 52 FQTRAADKGWYLEPIPWCESGFWITADEEQVPLGNTAEHMAGLFYIQEASSMMPVSALFM 111 Query: 240 L---NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 VLD+ AAPG KT Q+ + + + A + S R++ L N++R + + Sbjct: 112 QSGAPFEHVLDMAAAPGSKTTQIAALMDNQGVLIANEYSASRVKILHANIERCGIRNSAL 171 Query: 294 IEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQG 351 D + + FDAVL+DAPCS GT+R+ PD + ++ A Q+ L+ Sbjct: 172 TNFDGQIFGGWLPEQFDAVLLDAPCSGEGTVRKDPDAMKNWSKASVMSIAQTQKSLIESA 231 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +K GG++V+S C+L ++++++V + + V L+ + + ++ EG Sbjct: 232 FQALKVGGVLVYSTCTLSREENQDVCWHLKHTYGDAVTFTRLDQLFPSA---EQTITEEG 288 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ I P + + GFF + + Sbjct: 289 FLHIFPQVYDCE--------GFFVAKITKQA 311 >gi|148725459|emb|CAN87999.1| novel protein (zgc:55517) [Danio rerio] Length = 766 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 77/349 (22%), Positives = 118/349 (33%), Gaps = 57/349 (16%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 + L+ Y KE D L+ D W L+ +L + K Sbjct: 80 HAKEILHTLKEKYFKEVQDLEVDGQKIEAPQPLSWYPDELAWHTNLSRKILRKSPLLEKF 139 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT 267 + G Q+A + IP L +LD+CAAPG KTAQLI Sbjct: 140 HQFLVSETES---GNISRQEAVSMIPPLLLKIEPQHKILDMCAAPGSKTAQLIEMLHSDM 196 Query: 268 ----------ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307 A DV +R L RL+ ++ DA + Sbjct: 197 DVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLHFDNNGKKDILFY 256 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R++ DV T + + Q ++ ++G+ + GG +V+S CS Sbjct: 257 DRILCDVPCSGDGTMRKNIDVWKKWTTSNSLHLHGLQLRIAVRGVEQLAVGGRMVYSTCS 316 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI--------- 413 L+ + E V+ +L S +EL + I ++ EG Sbjct: 317 LNPIEDEAVIAALLEKSEGSLELADASPDLPGLKYMPGITSWKVMTKEGQWFSNFSEVPT 376 Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI 442 +I P M +I GFF L + Sbjct: 377 SRHTQIRPTMFPPSDSEKLTEMRLERCVRILPHHQNTGGFFVAVLVKKA 425 >gi|242019809|ref|XP_002430351.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515475|gb|EEB17613.1| conserved hypothetical protein [Pediculus humanus corporis] Length = 682 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 73/420 (17%), Positives = 133/420 (31%), Gaps = 95/420 (22%) Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE---- 163 + ++ K R + + RE + I PE + ++ Sbjct: 4 NKIKRKVKRERSKNENSRKSYEDIVRENKDFESYYKLQKICPEEEWDNFIKALKEDLPTA 63 Query: 164 --------RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG--IRLKELPESIV 213 + + D + + + A+ +L+ + I Sbjct: 64 FRITGSKTEAKTLLQIVQGQYFKD-FLNAKQDESIKEPFALPWYPDNLAWQLQLSRKDIR 122 Query: 214 SLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262 F + Q+ + IP ++ +LD+CA+PG KTAQLI Sbjct: 123 RCEAFFKLHNFLISETDSGNINRQEVVSMIPPIALDVKSHHKILDMCASPGSKTAQLIEY 182 Query: 263 ---------GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------- 305 V A D+ R L RL I DA Sbjct: 183 LHKNDERLPKGFVIANDIDNNRCYMLVHQAKRLSSPNIIITNHDASIMPNFIIKNNDGGE 242 Query: 306 ---LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD +L D PC+ GT+R++ D+ +T + Q +++ +G+ + GG +V Sbjct: 243 NILKFDRILCDVPCTGDGTLRKNADIWTKWNTANGNNLHGVQFRIIKRGVEMLTIGGRLV 302 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA-------------------------- 396 +S CSL+ ++E V+ ++L + ++LV L Sbjct: 303 YSTCSLNPVENEAVIARLLTEAQGSLKLVNLAPLLPGLKYLKGLKSWLVTSKDVKGYKTF 362 Query: 397 ---------------YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + D+ L+ + +RI P + GFF AL ++ Sbjct: 363 DEVPKQWHTVVRPQMFPPPQDIVDQLNLDLCVRILPHHQD--------TGGFFVAALEKV 414 >gi|281212261|gb|EFA86421.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500] Length = 749 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 64/349 (18%) Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 ++++ + + ID + + + + + ++ L Sbjct: 104 MTQIVRDQLAQVISKLPKEVEIDGQTFTTLSEIEWYPDHLGWHSSLPKKAFRKNTV--LE 161 Query: 217 GFAEGVWWVQDAS--------ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--- 265 F + + + + IP VLD+CAAPG KT QLI S + Sbjct: 162 EFHQFLMHHSEQGNLTRQETVSMIPPVFMDVKPEHVVLDMCAAPGSKTTQLIESIHQGLS 221 Query: 266 --------VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------PKKLFD 308 V A DV R L RL A I +A + LFD Sbjct: 222 EKSVPTGVVIANDVDTNRCYMLVHQTARLGSPAIVITNHEAQHFPLLNLGAELGGPLLFD 281 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS GT+R++PD+ Q ++ ++ + +K GG +V+S CSL Sbjct: 282 RILADVPCSGDGTMRKNPDLWARWKNHFGSALHPLQLQIAVRAANLLKVGGRMVYSTCSL 341 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMA--------MALSP 409 + ++E VV ++ S + +V +++ + W +D +++P Sbjct: 342 NPIENEAVVAALIARSEGSMRIVDVSAMHPALKRAQGLHSWPVVDKETGELYSSWESVAP 401 Query: 410 EGWIRITPDMLE---------------KIDGVSSGMDGFFAVALRRLIQ 443 RI P ++ GFF L ++ + Sbjct: 402 TKKARIHPSFFPPTKEFAESIGLQNCMRVYPHLQDTGGFFITVLEKVSE 450 >gi|300814521|ref|ZP_07094777.1| NOL1/NOP2/sun family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511348|gb|EFK38592.1| NOL1/NOP2/sun family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 178 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 29/201 (14%) Query: 246 LDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFD 300 +DLCAAPGGK+ L + ++ A D S +L+ +R N RL + + D ++ Sbjct: 1 MDLCAAPGGKSTHLGALLENTGQIVACDKSWYKLDLIRENAKRLGVSNIKVSINDASKYN 60 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD LVDAPCS+ G R+ PD+ W R DDI A Q+ ++ +VK GG+ Sbjct: 61 NDFEDKFDYCLVDAPCSAIGLYRKKPDIKWNRSLDDIKNLAQIQKIIINNAGRYVKKGGV 120 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++S CSL ++E V+++ L + L + + +++ P Sbjct: 121 LIYSTCSLSYSENEGVIKEFLDRNKNYKIL---------------TIEGKDILKLFP--- 162 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 DGF L+RL Sbjct: 163 ------FDNYDGFSICKLQRL 177 >gi|296192254|ref|XP_002743980.1| PREDICTED: putative methyltransferase NSUN5 isoform 2 [Callithrix jacchus] Length = 391 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 23/251 (9%) Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VS 262 + P + G +QD ++ +P L V+D CAAPG KT+ L + Sbjct: 153 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 212 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSS 318 K+ A D+ +RL + L R + ++ E D P +L+D CS Sbjct: 213 QGKIFAFDLDAKRLSSMATLLARAGVSCCELAEDDFLAVSPSDPRYSQVRYILLDPSCSG 272 Query: 319 TGTIRRHPDVLWTRDT--DDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSE 374 +G R + R + + A FQ++ L ++F ++ +V+S CSL ++++E Sbjct: 273 SGMQSRQLEEPGARTPSPERLHALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENE 329 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 +VV+ L+ +P L P+ W ++ E +R +P+ GFF Sbjct: 330 DVVRGALQQNPGAFRLAPVLPT-WPLRGLSRFPGAEHCLRASPETTLSG--------GFF 380 Query: 435 AVALRRLIQPK 445 + R+ P+ Sbjct: 381 VAVIERVEAPR 391 >gi|167764745|ref|ZP_02436866.1| hypothetical protein BACSTE_03135 [Bacteroides stercoris ATCC 43183] gi|167697414|gb|EDS13993.1| hypothetical protein BACSTE_03135 [Bacteroides stercoris ATCC 43183] Length = 492 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 119/302 (39%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + G E + + S + + + + Sbjct: 1 MELPVSFADYTRTLLGDEDYKELVTSLESEQSVSIRLNPLKPFAFRSGEHAVPWCTSGFY 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI-- 260 E + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ + Sbjct: 61 LEERPTFTFDPLFHAGCYYVQEASSMFVEQALKQYMGEEPVVMLDLCAAPGGKSTHIRSL 120 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 + + A +V + R + L NL + + D D+ P + FD +L D PCS Sbjct: 121 LPDNSLLIANEVIRNRSQILAENLTKWGHPDVVVTNSDPSDFTPLEDFFDVILTDVPCSG 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + + +++ QR+++ +KPGGI+++S C+ + +++EE ++ Sbjct: 181 EGMFRKDPVAISEWNPENVEICRQRQRRIIADIWPCLKPGGILIYSTCTYNTKENEENIR 240 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + V + + + + ++ S R P + GFF L Sbjct: 241 WIRDEFGAEVLPLDVAEEWNITGNLLQGES-FPVYRFLPHKTQGE--------GFFLAVL 291 Query: 439 RR 440 R+ Sbjct: 292 RK 293 >gi|297674921|ref|XP_002815454.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like isoform 2 [Pongo abelii] Length = 732 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 134/401 (33%), Gaps = 72/401 (17%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 E R A + +E + I+PE + + Sbjct: 17 EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + L I ++ E H + + +L++ + +VS G Sbjct: 70 --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPQLEKFHQFLVS--ETESGNISR 125 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275 Q+A + IP L + +LD+CAAPG KT + V A DV +R Sbjct: 126 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325 L RL ++ DA +D +L D PCS GT+R++ Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L S Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305 Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421 +EL +++ I ++ +G +I P M Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPLKDPEK 365 Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406 >gi|57167662|ref|ZP_00366802.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli RM2228] gi|305433169|ref|ZP_07402325.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20] gi|57020784|gb|EAL57448.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli RM2228] gi|304443870|gb|EFM36527.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20] Length = 291 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 21/279 (7%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 I +LT++ + + + + + + + S+ F E +++Q+ Sbjct: 27 ICCFINRLKCDNLTLEREFQDLNLEYKKLNEYCYLFKACDKSI-LSSMQAFNEFKFYIQN 85 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD 284 ++ + SVLD+CAAPGGK+ + + + + SK R L+ NL Sbjct: 86 YASYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLK 145 Query: 285 RLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + A + + FD +L+DAPCS+ + + + +I A Sbjct: 146 NYGVKARVFMKDGKNIGNLCPLKFDKILLDAPCSTLA----KMGLELEKSSKEIKNIAKL 201 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN--SAYWKSI 401 Q+KLL + +K GG +V+S C+ K+++EEV++ L+S +EL+ +N +A K+ Sbjct: 202 QKKLLHSALKALKVGGELVYSTCTFTKEENEEVIENALKS-DFDIELLDINLENALAKNG 260 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + RI P DGFF LR+ Sbjct: 261 QSSEFEAISKCKRILPCEEY---------DGFFITKLRK 290 >gi|218128754|ref|ZP_03457558.1| hypothetical protein BACEGG_00326 [Bacteroides eggerthii DSM 20697] gi|217988982|gb|EEC55298.1| hypothetical protein BACEGG_00326 [Bacteroides eggerthii DSM 20697] Length = 492 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 125/305 (40%), Gaps = 22/305 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + N G E + ++ A S + + + + Sbjct: 1 MELPVLFTDYTRNLLGDEDYMRLTAALESEQPVSIRLNPLKPFAFQLGEDEVPWCASGFY 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI-- 260 + + P F G ++VQ+AS+ Q+ +LDLCAAPGGK+ + Sbjct: 61 LKERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQHWGEEPAVMLDLCAAPGGKSTHVRSI 120 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 + + A +V + R + L NL + + D D+ P K LFD +L D PCS Sbjct: 121 LPENSLLIANEVIRNRSQILSENLAKWGHTGVVVTNNDPSDFTPLKDLFDIILTDVPCSG 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + +++ QR+++ +KPGGI+++S C+ + +++EE ++ Sbjct: 181 EGMFRKDPVAVSEWSLENVEVCWRRQRRIISDIWPCLKPGGILIYSTCTYNTKENEENIR 240 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE---KIDGVSSGMDGFFA 435 + E++PL+ A ++ + P + + +GFF Sbjct: 241 WI--RDEFGAEVLPLDVAE------DWNITGN----LLPGEHFPVYRFLPYKTKGEGFFM 288 Query: 436 VALRR 440 LR+ Sbjct: 289 AVLRK 293 >gi|322389235|ref|ZP_08062796.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC 903] gi|321144140|gb|EFX39557.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC 903] Length = 434 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 118/298 (39%), Gaps = 24/298 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P FKE+ ++ G++ ET + + G Sbjct: 1 MNFPNGFKEKYQHLLGEDAAAFF-ATFEQEAVSAFRTNPLKETQKAFDDPIPNTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +SI A G+ + Q+ +A + Q+ + VLDL AAPGGKT Q + + Sbjct: 60 KVSGKSIEH----ATGLVYSQEPAAQMVAQVAQPKPGMKVLDLAAAPGGKTTQLLSYLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++ K R + L N++R + D FD +++DAPCS G Sbjct: 116 QGLLVSNEIHKGRSKILVENVERFGARNVLVTNESADRLAKVFSGFFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + + QR++L + + PGG +V+S+C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSVDYPRECSLLQREILEDALKMLVPGGSLVYSSCTWAPEENEEIVSWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + + +E + + + ID R+ P + F Sbjct: 236 LENYDLELETIEKINGMAEGIDYPETA------RMYPHHFKGEGQ--------FVAKF 279 >gi|68477176|ref|XP_717381.1| hypothetical protein CaO19.518 [Candida albicans SC5314] gi|46439090|gb|EAK98412.1| hypothetical protein CaO19.518 [Candida albicans SC5314] gi|238879891|gb|EEQ43529.1| conserved hypothetical protein [Candida albicans WO-1] Length = 713 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272 Q+A + IP L + VLD+CAAPG KTAQLI V A D Sbjct: 155 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHAEDEKKLPTGFVLANDSD 214 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS T+R+ Sbjct: 215 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNSSQDLKFDRILCDVPCSGDATMRK 274 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E +V LR Sbjct: 275 NLNVWKDFRVGNALGLHNVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 334 Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410 + LV +++ A+ + + A E Sbjct: 335 GDQIRLVNVDNELPGLKRRAGVSDWKVYGKDMELREPGAEDVPETAFPPTKEEAEKFHLE 394 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R+ P M GFF ++ Sbjct: 395 NCVRVYPHMQ--------NTGGFFITVFEKI 417 >gi|126140348|ref|XP_001386696.1| hypothetical protein PICST_37206 [Scheffersomyces stipitis CBS 6054] gi|126093980|gb|ABN68667.1| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 698 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 96/263 (36%), Gaps = 44/263 (16%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272 Q+A + IP L + VLD+CAAPG KTAQ + V A D Sbjct: 148 ISRQEAVSMIPPLLMDIKPHHYVLDMCAAPGSKTAQLVEALHQDDDKELPTGFVLANDSD 207 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS GT+R+ Sbjct: 208 YKRSHMLVHQVKRLNSANFMVVNHDATLFPRLKLNNSNEFLKFDRILCDVPCSGDGTMRK 267 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CS+ ++E VV LR Sbjct: 268 NVNVWKDFTVGNALGLHPLQINILNRGLQLLKKGGRLVYSTCSMSPVENEAVVAAALRKW 327 Query: 385 PIPVELVPLNSAYWKSID--------------------------MAMALSPEGWIRITPD 418 + LV ++ + A + E + Sbjct: 328 GGQIRLVNCDNELPGLVRRNGISDWKVFGKDMELRERGAEDIPATAFPPTEEETAKFNLQ 387 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 ++ GFF ++ Sbjct: 388 NCIRVYPHLQNTGGFFITVFEKI 410 >gi|270288818|ref|NP_001161820.1| putative methyltransferase NSUN5 isoform 4 [Homo sapiens] gi|119590100|gb|EAW69694.1| hCG39703, isoform CRA_c [Homo sapiens] Length = 391 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 23/272 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D+ K + + + + P + G +QD ++ +P L Sbjct: 132 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 191 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 192 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 251 Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354 P +L+D CS +G R T + A FQ++ L ++F Sbjct: 252 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 311 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ +V+S CSL ++++E+VV+ L+ +P L P A W ++ E + Sbjct: 312 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 367 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 R +P+ GFF + R+ P+ Sbjct: 368 RASPETTLSS--------GFFVAVIERVEVPR 391 >gi|68476987|ref|XP_717471.1| hypothetical protein CaO19.8149 [Candida albicans SC5314] gi|46439184|gb|EAK98505.1| hypothetical protein CaO19.8149 [Candida albicans SC5314] Length = 756 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272 Q+A + IP L + VLD+CAAPG KTAQLI V A D Sbjct: 198 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHAEDEKKLPTGFVLANDSD 257 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS T+R+ Sbjct: 258 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNSSQDLKFDRILCDVPCSGDATMRK 317 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E +V LR Sbjct: 318 NLNVWKDFRVGNALGLHNVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 377 Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410 + LV +++ A+ + + A E Sbjct: 378 GDQIRLVNVDNELPGLKRRAGVSDWKVYGKDMELREPGAEDVPETAFPPTKEEAEKFHLE 437 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R+ P M GFF ++ Sbjct: 438 NCVRVYPHMQ--------NTGGFFITVFEKI 460 >gi|124806360|ref|XP_001350701.1| sun-family protein, putative [Plasmodium falciparum 3D7] gi|23496827|gb|AAN36381.1|AE014848_57 sun-family protein, putative [Plasmodium falciparum 3D7] Length = 376 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 114/328 (34%), Gaps = 41/328 (12%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD- 185 + E P+ +L + YG+++ + + + L V + Sbjct: 76 SSDKWKYEMNNEKIPAHVRYSFPKELYNQLLDCYGEKKSITLMSILNEKAPVFLRVNNNK 135 Query: 186 --IETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 L + + L + + ++ + +G + +QD ++ I Sbjct: 136 ISRNELYKTLISKGISVEKCVNSPYGLLLTKNQILKNIHEYKKGYFEIQDEASQIVSSKI 195 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD CA GGK + L+ + K+ D+ + L + + L R + ++ Sbjct: 196 PVHPGDKVLDYCAGSGGKTLAFSMLMENTGKIYLHDIRDQMLSQAKIRLRRAGIQNYILL 255 Query: 295 EMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + D V+VDAPC+ TG +RR+P++ + + + QR++ + Sbjct: 256 NSNHILLKKLFGYMDVVIVDAPCTGTGALRRNPEMKYKFTNNKLYDYVKTQREIFENALL 315 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++K G +V+ CS+ ++ + + + + P +S Sbjct: 316 YLKKNGKIVYITCSILDAENVHQAKYFCQKHNLYLSEAPFHS------------------ 357 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 S MDGFF R Sbjct: 358 ----------LPQSKAMDGFFLATFERK 375 >gi|126320957|ref|XP_001371426.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein [Monodelphis domestica] Length = 799 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 79/426 (18%), Positives = 132/426 (30%), Gaps = 87/426 (20%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF------ 159 + + A R + + +E ++I+PE E+ Sbjct: 23 ESRDDATDRDGKRDKSGWEGGYPE-IIKENKLFEHYYQELNIVPEGEWEQFMQALREPLP 81 Query: 160 ---------YGKERVLAISDACISPLYIDLTVKFDIETWAHKL--NAVMLPTGGIRLKEL 208 + +L DL V L L +++ Sbjct: 82 ATLRITGYKCHAKEILHCLKNKYFKELEDLVVDGQKVEVPQPLSWYPEELAWHTNLSRKI 141 Query: 209 PESIVSLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---- 256 L F + + Q+A + IP L + +LD+CAAPG KT Sbjct: 142 LRKSPQLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVQPHHKILDMCAAPGSKTAQLI 201 Query: 257 ------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD----------AFD 300 + V A DV +R L RL ++ D Sbjct: 202 EMLHADMNVSFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDMNG 261 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +D +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG Sbjct: 262 KKEVLFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGVEQLAEGGR 321 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-- 413 +V+S CSL+ + E V+ +L S +EL ++S I ++ +G Sbjct: 322 MVYSTCSLNPIEDEAVIASLLEKSEGALELADVSSELPGLKWMPGITQWKVMTKDGQWFA 381 Query: 414 -----------RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI---- 442 +I P M +I GFF L + Sbjct: 382 DWKDVPQSRHTQIRPTMFPPKGQENLKKMNLERCLRILPHHQNTGGFFVAVLVKKSSMPW 441 Query: 443 ---QPK 445 QPK Sbjct: 442 NKRQPK 447 >gi|15903302|ref|NP_358852.1| hypothetical protein spr1259 [Streptococcus pneumoniae R6] gi|15458898|gb|AAL00063.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] Length = 267 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 10/265 (3%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 PE F E+ + + V E +A+ G Sbjct: 1 MQFPEGFVEK-YKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--- 262 K P A G+ + Q+ +A + Q+ + VLDL AAPGGK+ QL Sbjct: 60 KVS----GKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAG 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + ++S +R + L N++R + D K FD +++DAPCS G Sbjct: 116 EGLLVSNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ PD + D + A QR++L ++ + GG +V+S C+ +++EE+V + Sbjct: 176 MFRKQPDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAM 405 L + V + ID+ Sbjct: 236 LEEYDFDLLPVEHINGMVAGIDLPE 260 >gi|332228170|ref|XP_003263268.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2 [Nomascus leucogenys] Length = 732 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 135/401 (33%), Gaps = 72/401 (17%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 E R A + +E + I+PE + + Sbjct: 17 EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + L I ++ E H + + +L++ + +VS G Sbjct: 70 --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPQLEKFHQFLVS--ETESGNISR 125 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275 Q+A + IP L G + +LD+CAAPG KT + V A DV +R Sbjct: 126 QEAVSMIPPLLLGVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325 L RL ++ DA +D +L D PCS GT+R++ Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L S Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305 Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421 +EL +++ I ++ +G +I P M Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEK 365 Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406 >gi|332820887|ref|XP_003310669.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 [Pan troglodytes] Length = 732 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 134/401 (33%), Gaps = 72/401 (17%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 E R A + +E + I+PE + + Sbjct: 17 EDAEDGAEGGGKRGEAGWEGGYPE-IVKENKLFEHYYQELKIVPEGEWGQFMDA------ 69 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + L I ++ E H + + +L++ + +VS G Sbjct: 70 --LREPLPATLRITGYKRYPEELAWHTNLSRKILRKSPQLEKFHQFLVS--ETESGNISR 125 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRR 275 Q+A + IP L + +LD+CAAPG KT + V A DV +R Sbjct: 126 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 185 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRH 325 L RL ++ DA +D +L D PCS GT+R++ Sbjct: 186 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKN 245 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L S Sbjct: 246 IDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSE 305 Query: 386 IPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE------ 421 +EL +++ I ++ +G +I P M Sbjct: 306 GALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEK 365 Query: 422 ----------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 366 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 406 >gi|307166761|gb|EFN60723.1| tRNA (cytosine-5-)-methyltransferase CG6133 [Camponotus floridanus] Length = 665 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 104/312 (33%), Gaps = 81/312 (25%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L+ + I + Q+ + +P + + VLD+CAA Sbjct: 131 WQLQLTRKDIRRSEAYFRLHNFLIAETNNGSISRQEVVSMVPPLVLDVKPSHKVLDMCAA 190 Query: 252 PGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 PG KTAQLI V A D+ R L RL+ I D+ Sbjct: 191 PGSKTAQLIEMIHADEGNIPPEGFVIANDLDNNRCYMLVHQAKRLNSPNILITNHDSSVM 250 Query: 302 C-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 FD +L D PCS GT+R++PD+ + Q ++ + Sbjct: 251 PNFIITNPDGTKDTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQYRIAKR 310 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL----------------- 393 G+ + GG +V+S CSL+ ++E V+ ++L + V+L+ Sbjct: 311 GLELLIVGGRMVYSTCSLNPIENEAVLHRLLCETGDSVQLIDCRDLVPGLLCDPGVTHWK 370 Query: 394 ------------------------NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +D A E +RI P + Sbjct: 371 PASKNLQYYNTWDDVPEQWQTQVRPKMFPPQVDEASKFHLERCMRILPHHQD-------- 422 Query: 430 MDGFFAVALRRL 441 GFF L ++ Sbjct: 423 TGGFFVAVLEKV 434 >gi|319938945|ref|ZP_08013309.1| NOL1/NOP2/sun family protein [Streptococcus anginosus 1_2_62CV] gi|319811995|gb|EFW08261.1| NOL1/NOP2/sun family protein [Streptococcus anginosus 1_2_62CV] Length = 434 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 116/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ F+E+ N G E + V E N + G Sbjct: 1 MNFPKGFEEKYNNLLG-EEAPSFFLTFDEEPVSAFRVNPLKEQQKTFPNPIPNTNWGYYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +SI + G + + Q+ +A + Q+ N+ VLDL AAPGGK+ + + Sbjct: 60 KVSGKSIEHVTG----LVYSQEPAAQMVAQVAAPQQNMKVLDLAAAPGGKSTHLLSYLNN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + FD +++DAPCS G Sbjct: 116 TGLLVSNEINPKRSKVLVENIERFGARNVVVTNESAGRLSQVFQGYFDLIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + + A QR++L I + G +++S C+ +++E++V + Sbjct: 176 MFRKQPEAMEYWSESYPAQCAQLQREILEDTIKMLATNGELIYSTCTWAPEENEQIVDWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + P+ + +P + I + R+ P + F R Sbjct: 236 LENYPLELVEIPKINGMVAGIHFSETA------RMYPHHFKGEGQ--------FVAKFR 280 >gi|134045502|ref|YP_001096988.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5] gi|132663127|gb|ABO34773.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5] Length = 277 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 121/264 (45%), Gaps = 26/264 (9%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240 E +L + L + + S P + G +++Q S+ IP Sbjct: 29 EDLKKRLEEKGVELEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSITLNPT 88 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + +LD+CAAPGGKT L + + + A++++K RL+ LR N++R+ +I + Sbjct: 89 KDDDLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTN 148 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A + K FD +L+DAPC+ D + DI+ A Q +L I +K Sbjct: 149 AVNIDKKLKFDKILLDAPCTGNEI----KDCNRVKTKRDILFCAKRQVELFRTAIEVLKD 204 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CS + ++ E++V+ +L+++ +EL+ L+ + I+M G +++ P Sbjct: 205 GGELVYSTCSPEIEEDEDIVRYILKNNKN-MELIELSVDDFPGINMIEGEVK-GTLKVIP 262 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 FF R++ Sbjct: 263 PNEP-----------FFIAKFRKV 275 >gi|322516806|ref|ZP_08069708.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis ATCC 49124] gi|322124643|gb|EFX96107.1| NOL1/NOP2/sun family protein [Streptococcus vestibularis ATCC 49124] Length = 436 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 112/299 (37%), Gaps = 23/299 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P F E+ N G + + + ++ + + T Sbjct: 1 MQFPSDFIEKYNNLLG-DEAKDFFASFDQEA-VSAYRTNPLKKQQKDFSDAIPETPWGHY 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 ++ A G+ + Q+ +A + Q+ VLDL AAPGGK+ + + Sbjct: 59 GKISGKSADH---ATGLVYSQEPAAQMVAQVAAPAKGSRVLDLAAAPGGKSTHLLSYLDN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + D K FD ++ D PCS G Sbjct: 116 TGLLVSNEINPKRSKILVENIERFGARNVVVTNTSADKLAKVFKNYFDTIVFDGPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + D + A Q+ +L G+ + PGG +++S C+ +++E VV + Sbjct: 176 MFRKDPEAIQYWHKDYPSELAQLQKDILSDGLKMLAPGGQLIYSTCTWSPEENEGVVAWI 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + P ++LV + + + R+ P + F + Sbjct: 236 LENYP-DLKLVQIPKWNGMRGGIDFPETA----RMYPHHFKGEGQ--------FVAKFQ 281 >gi|304311817|ref|YP_003811415.1| hypothetical protein HDN1F_21870 [gamma proteobacterium HdN1] gi|301797550|emb|CBL45770.1| Hypothetical protein HDN1F_21870 [gamma proteobacterium HdN1] Length = 545 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 14/244 (5%) Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIETW----AHKLNAVMLPTGGIRLKELPESIV 213 + + D+ + + + D P + + Sbjct: 274 SQWDTAARQRFIDSHTARPPLYIRPLPDKTEEVFTDLRDNGLTATPLEKALCITGSKGLY 333 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALD 270 L + +G + +QD ++ + D CA GGK+ Q + V A D Sbjct: 334 ELESYQQGWFEIQDLASQAIGEHVAAKPGELGWDACAGGGGKSMQLASAMQGKGAVYASD 393 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIR 323 + + +L+++R R L+ + FD VLVDAPCSS+GT R Sbjct: 394 IREYKLDEIRRRAQRAQLHNIRTFVWQGEPLDRLPTAVAKRGGFDWVLVDAPCSSSGTWR 453 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R+PD W D + + Q KLL V+PGG VV+S CS +++E++V L Sbjct: 454 RNPDARWRIDESQLAEITALQAKLLASAALSVRPGGRVVYSTCSFFVEENEQIVAAFLEQ 513 Query: 384 SPIP 387 P Sbjct: 514 HPEF 517 >gi|326692539|ref|ZP_08229544.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc argentinum KCTC 3773] Length = 482 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 34/245 (13%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ SA ++ VLDL AAPGGKT + + A ++ R + L Sbjct: 78 VYSQEPSAQFVGEVLQPKPGERVLDLAAAPGGKTTHLAAFMQQEGLLWANEIFMNRAKVL 137 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R+ + + + K FD +L+DAPCS G R++P + D Sbjct: 138 SENIERMGVQNSIVSSHAPAELSAKLPQFFDKILLDAPCSGEGMFRKNPAAVAQWHQDFP 197 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A QR++L + + ++PGG +V+S C+ ++ E+++ +++ P ++LVP++ Sbjct: 198 QELADLQREILREAMKMLRPGGQIVYSTCTFAPEEDEQMIAWLMQEYP-EMQLVPIDKPA 256 Query: 398 WKSIDMAMALSP--------------------EGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + EG R+ P L+ G FA Sbjct: 257 HTHVQDGRPAWADQAYTAGQTTVSTTADLTVLEGTARLWPQALQGE--------GHFAAK 308 Query: 438 LRRLI 442 L + Sbjct: 309 LEKAA 313 >gi|294677285|ref|YP_003577900.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter capsulatus SB 1003] gi|294476105|gb|ADE85493.1| ribosomal RNA small subunit methyltransferase B-2 [Rhodobacter capsulatus SB 1003] Length = 389 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 82/452 (18%), Positives = 134/452 (29%), Gaps = 74/452 (16%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+ ++ L + L F D+ VR V LR Sbjct: 1 MTP--AARIAAAITLLDAIAAGEPAERALTNWGRAHRFAG--SGDRAAVRDHVYDALRCR 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 A+ L + + D A V A + Sbjct: 57 GSFAALGGAADGRG-----------LMLG---MCRAAGIDPATVFTGAGHAPAPLLPQEV 102 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACISPLYI 178 A + + P+W +L + V + A Sbjct: 103 AAFAAPLPEAADLAARDW----------PDWLLPQLRADLGADFDAVSDVMRARAPVFLR 152 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLK-------ELPESIVSLPGFAEGVWWVQDASAS 231 + + A L + T L I + + +G+ +QD ++ Sbjct: 153 VNLARASLAEAAQALAQEGIGTEPHPLAASALRVLSGARRIAAAQAYLQGLVELQDVASQ 212 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALDVSKRRLEKLRCNLDRLHLY 289 + VLD CA GGK L + ++TA D+ R++ + R Sbjct: 213 AVLSGLALPEAARVLDYCAGGGGKALALAAAHPGARITAHDIDAGRMKDIPPRAARAGAR 272 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +FD VLVDAPCS +GT RR P+ W + + Q ++L Sbjct: 273 IAQAAPGKV-----AGVFDLVLVDAPCSGSGTWRRTPEAKWRLTPARLAELTALQDQILE 327 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 + + V PGG +++ CSL +++ + +R + Sbjct: 328 RAAAHVAPGGQLLYMTCSLLAAENDARLSAFVRRGGFALAE------------------- 368 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + G DGFFA LRRL Sbjct: 369 -----------RRSYSPRDGGDGFFAGLLRRL 389 >gi|330685487|gb|EGG97140.1| NOL1/NOP2/sun family protein [Staphylococcus epidermidis VCU121] Length = 198 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 21/214 (9%) Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLH 287 + N SVLD C+APGGK + V A D+ +++ + N+ +L Sbjct: 1 MFVAHIMDLNRNDSVLDACSAPGGKACHIAEILSPEGHVDATDIHDHKIKLIDFNIRKLR 60 Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 L + + DA + +D +LVDAPCS G +R P++ +T+ + I Q ++ Sbjct: 61 LKNIEAYQHDATE-PYVTQYDKILVDAPCSGFGVLRHKPEIKYTQSKNSIQSLVELQLQI 119 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L VKPGG +++S C++++ ++E VV L+ + E P + Sbjct: 120 LENVKHNVKPGGSIIYSTCTIEQMENENVVYTFLKQNK-DFEFEPFQHPMTGEMV----- 173 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P DGFF ++R Sbjct: 174 ---KTLQIFPQDY--------HSDGFFIARIKRK 196 >gi|291541096|emb|CBL14207.1| tRNA and rRNA cytosine-C5-methylases [Roseburia intestinalis XB6B4] Length = 493 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 103/282 (36%), Gaps = 27/282 (9%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG------ 238 E L V G ++ P GV+++Q+ SA PV Sbjct: 45 MKEKVPFSLQPVAWAKDGFYYEKDDTP-GRHPLHEAGVYYIQEPSAMAPVSYLMEDYDVV 103 Query: 239 ----TLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALDVSKRRLEKLRCN 282 +LDLCAAPGGK+ Q + ++ R + L N Sbjct: 104 QKEAADCQERILDLCAAPGGKSTQIAARMHEMYTSGKWKEQGLLICNEIHPARAKILSEN 163 Query: 283 LDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 ++R+ + + + F +LVDAPCS G R++ + +++ Sbjct: 164 VERMGIANAMVTNESPQRLAEVFEDYFTRILVDAPCSGEGMFRKNEAACEEWNPENVRLC 223 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A Q ++L S + PGG +V+S C+ ++E + + L P + + + Sbjct: 224 AERQDEILDCAASMLAPGGRIVYSTCTFAPAENEGSMTRFLLRHPEFHIVEVKKAEGMSA 283 Query: 401 IDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVALRR 440 A E ++ P++ + ++ +G + L + Sbjct: 284 GVPEWAYFGEKMGQVLPEIAQTIRLWPQHLKGEGHYLAVLEK 325 >gi|297618702|ref|YP_003706807.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3] gi|297377679|gb|ADI35834.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3] Length = 322 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 149/329 (45%), Gaps = 31/329 (9%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA--CISPLYIDLT-VK 183 ++++ K ++ + +P+ E + E ++ + YI + ++ Sbjct: 11 DIKKMREMKDKIRKDNKIELDLPKNSDESYDKSIYGEENSDENNNAEFQNYKYIRVNTLQ 70 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLF 237 E +L + L + S+ + P + G +++Q S+ +PV Sbjct: 71 IAPEELKKRLENKKVVLEDTFLDYAFKVVSSPFSVGATPEYLYGYYFMQSISSMVPVIAL 130 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 N +LD+CAAPGGKT + + + A++V+K R+ L N++R+ + I Sbjct: 131 NPQKNERILDMCAAPGGKTTHIAQLLENEGVIFAVEVNKNRIRSLTSNVNRMGIKDVVTI 190 Query: 295 EMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 D+ + ++L FD +L+DAPC+ + D ++ DI+ + Q++L+ I Sbjct: 191 NTDSVNLKSEELGLFDKILLDAPCTGNA----YKDSSRIKNRSDILFCSNRQKELIHTAI 246 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + +K GG +V+S CS + ++ EEV+ ++ VEL+ L+ +K +++ AL G Sbjct: 247 NLLKSGGELVYSTCSPEIEEDEEVISHIVNLR-NDVELIKLDKNDYKGLNIQDALIK-GT 304 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++I P F+ L++L Sbjct: 305 LKILPPNEP-----------FYIAKLKKL 322 >gi|260939708|ref|XP_002614154.1| hypothetical protein CLUG_05640 [Clavispora lusitaniae ATCC 42720] gi|238852048|gb|EEQ41512.1| hypothetical protein CLUG_05640 [Clavispora lusitaniae ATCC 42720] Length = 730 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 96/266 (36%), Gaps = 43/266 (16%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272 Q+A + IP L + +VLD+CAAPG KTAQ + V A D Sbjct: 156 ISRQEAVSMIPPLLMDVQPHHAVLDMCAAPGSKTAQLVEALHAKDAETPASGFVIANDSD 215 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAF--------DYCPKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS GT+R+ Sbjct: 216 YKRSHMLVHQVKRLNSPNFLVVNHDAQLFPRVQLEKHSEHIKFDRILCDVPCSGDGTMRK 275 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V D + Q +L +G+ +K GG +V+S CS+ ++E VV + LR Sbjct: 276 NINVWKDFTVADGMGLHPLQVNILSRGLQLLKEGGRLVYSTCSMSPIENEAVVAEALRRF 335 Query: 385 P-------------------------IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 P EL A S E D Sbjct: 336 PQASLVDVSAELPGLKRRAGVSSWKVFNKELEEKQKGDEGVHATAFPPSEEEAQAFHLDR 395 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQPK 445 ++ GFF + + + Sbjct: 396 CVRVYPHLQNTGGFFITVFEKKPKAE 421 >gi|290890632|ref|ZP_06553703.1| hypothetical protein AWRIB429_1093 [Oenococcus oeni AWRIB429] gi|290479760|gb|EFD88413.1| hypothetical protein AWRIB429_1093 [Oenococcus oeni AWRIB429] Length = 458 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 113/298 (37%), Gaps = 22/298 (7%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 ++ L +A L + + G K ES Sbjct: 12 YRRLLGKEADDFLASFQMEADNGFHLNPLKDLRQFASLKRQAPIPWNRENGRYGKIFGES 71 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + F GV + Q+ SA ++ +LDL AAPGGK+ Q + + + A Sbjct: 72 V----AFLSGVAYSQEPSAQFVARVVDAQPGEKILDLAAAPGGKSTQIAADMNNQGLLIA 127 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEM--DAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 ++S R + L N++R + + D + FD +L+DAPCS G R+ P Sbjct: 128 NEISFSRAKILSENIERSGITNCIVTNHRPDELAEHFENYFDKILLDAPCSGEGMFRKDP 187 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +D + A Q+++L +S ++P G +++S C+ ++ E+++ +L + Sbjct: 188 QAIKYWHSDYSSECANRQKEILKSVLSMLRPNGQLIYSTCTFAPEEDEQIMAWLLDNY-S 246 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI----RITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ + + R+ P+ ++ G F L + Sbjct: 247 ELSLLKIRKKDGIEDGRPQWADGNRELKNTARLWPNKIKGE--------GHFVARLIK 296 >gi|253580234|ref|ZP_04857500.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848327|gb|EES76291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 467 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 18/270 (6%) Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 D E + + + P + G++++Q+ SA P Sbjct: 48 CEDFENLSPFPTRQIPWIKNGYFYDEDIRPSRCPYYQAGLYYLQEPSAMTPASRIPIEPG 107 Query: 243 LSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLDLCAAPGGK + + A D+S R L NL+ + + Sbjct: 108 DRVLDLCAAPGGKATAAGAALQGQGLLVANDISTSRARALLRNLELFGIPNVFVANETPA 167 Query: 300 DYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 FD +++DAPCS G R+ + + ++ + Q++L+LQ ++P Sbjct: 168 KLTKAFPEFFDKIILDAPCSGEGMFRKEEALAKDWTPEKSMELSEIQKELILQAADMLRP 227 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWI 413 G++++S C+ + E+ V +L + P +EL + S + + I Sbjct: 228 DGLMLYSTCTFAPAEDEQTVSWLLENRP-DMELAEMEDYEGFSHGVPEWGNGNPELIKCI 286 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 RI P + +G F + Q Sbjct: 287 RIFPHKM--------NGEGHFLALFHKKGQ 308 >gi|253566110|ref|ZP_04843564.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_2_5] gi|251945214|gb|EES85652.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 3_2_5] Length = 472 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 115/304 (37%), Gaps = 19/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E G E +S A + + A + Sbjct: 1 MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260 L + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240 Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E +PL A W + R P + GFF Sbjct: 241 TWI--RQEFGAEPLPLAVPAEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290 Query: 437 ALRR 440 ALR+ Sbjct: 291 ALRK 294 >gi|150402304|ref|YP_001329598.1| NOL1/NOP2/sun family RNA methylase [Methanococcus maripaludis C7] gi|150033334|gb|ABR65447.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus maripaludis C7] Length = 265 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 26/278 (9%) Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQ 226 T+K E +L + L + + S P + G +++Q Sbjct: 3 NLQFIRTNTLKISSEDLKKRLEEKGVVLEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQ 62 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNL 283 S+ IP + VLD+CAAPGGKT L + + + A++++K RL+ LR N+ Sbjct: 63 SISSIIPSITLNPSKDDDVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNI 122 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +R+ +I +A + K FD +L+DAPC+ + + DI+ A Sbjct: 123 NRMGFKNTLMINTNAVNLDKKLRFDKILLDAPCTGNEIKDSNRV----KTKRDILFCAKR 178 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q +L I +K GG +V+S CS + ++ E++V+ +L+++ +EL+ LN + I+M Sbjct: 179 QVELFRTAIEVLKDGGELVYSTCSPEIEEDEDIVRYILKNNKN-IELIELNVDDFLGINM 237 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +++ P FF R++ Sbjct: 238 IEGEVK-GTLKVIPPNEP-----------FFIAKFRKV 263 >gi|323127362|gb|ADX24659.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 435 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 114/300 (38%), Gaps = 25/300 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F + + G E ++ V K + L Sbjct: 1 MPLPKEFIDTYHSILGHETQAFLASFQQEA------VNAFRVNSLKKQSKSFEDPIPNTL 54 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 WGYYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPKKGSRVLDLAAAPGGKSTHLLSYLD 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + + ++SK+R + L N++R ++ + + FD ++ D PCS Sbjct: 115 NTGLLVSNEISKKRSKILVENIERFGARNVIVMNESANRLAKVFTQYFDMIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D + A Q+ +L +S +KPGG ++++ C+ +++E VV+ Sbjct: 175 GMFRKDPDAIQYWHQDYPAECAALQKSILEDTLSMLKPGGELIYATCTWSLEENEGVVKW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L + +ELV + + + R+ P + F + Sbjct: 235 LLETY-DFLELVDIPKVNGMVEGIGFSEPA----RMYPHRYKGEGQ--------FVAKFK 281 >gi|322411868|gb|EFY02776.1| Putative 23S rRNA m(5)C methyltransferase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 435 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 115/300 (38%), Gaps = 25/300 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F + + G E ++ V K + L Sbjct: 1 MPLPKEFIDTYHSILGHETQAFLASFQQEA------VNAFRVNPLKKQSKSFEDPIPNTL 54 Query: 206 KELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 WGYYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPKKGSRVLDLAAAPGGKSTHLLAYLD 114 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + + ++SK+R + L N++R ++ D + FD ++ D PCS Sbjct: 115 NTGLLVSNEISKKRSKILVENIERFGARNVIVMNESADRLAKVFTQYFDMIVFDGPCSGE 174 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ PD + D ++ A Q+ +L +S +KPGG ++++ C+ +++E VV+ Sbjct: 175 GMFRKDPDAIQYWHQDYPIECAFLQKSILEDTLSMLKPGGELIYATCTWSLEENEGVVKW 234 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L + +ELV + + + R+ P + F + Sbjct: 235 LLETY-DFLELVDIPKINGMVEGIGFSEPA----RMYPHRYKGEGQ--------FVAKFK 281 >gi|190344556|gb|EDK36247.2| hypothetical protein PGUG_00345 [Meyerozyma guilliermondii ATCC 6260] Length = 674 Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272 Q+A + IP L + +V D+CAAPG KTAQ V A D Sbjct: 158 ISRQEAVSMIPPLLMDIKPHHAVFDMCAAPGSKTAQLVEALHAEDEKKAPTGFVLANDSD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS GT+R+ Sbjct: 218 YKRSHMLVHQVKRLNSPNFMVVNHDAQLFPKIKLNGASEFLKFDRILCDVPCSGDGTMRK 277 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E VV LR Sbjct: 278 NVNVWKDFTVGNALGLHSLQVNILNRGLQLLKKGGRLVYSTCSLSPVENEAVVAAALRKW 337 Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410 ++LV + A+ S A E Sbjct: 338 GAQIKLVNCDDELPGLVRRKGLSTWKVLGKDMEEKEKGAEGIPETAFPPSETEAGEFHLE 397 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 IR+ P + GFF ++ Sbjct: 398 NCIRVYPHLQ--------NTGGFFITVFEKI 420 >gi|154504971|ref|ZP_02041709.1| hypothetical protein RUMGNA_02481 [Ruminococcus gnavus ATCC 29149] gi|153794854|gb|EDN77274.1| hypothetical protein RUMGNA_02481 [Ruminococcus gnavus ATCC 29149] Length = 462 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 19/271 (7%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 ++V+ ++ L V + G P + G++++Q+ SA P Sbjct: 43 ISVEDFLKIAPWPLRPVPWISNGFYYDGDQIQPAKHPYYFAGLYYLQEPSAMTPADRLLI 102 Query: 240 LNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--I 294 VLD+CAAPGGK + + + A D+S R + L N++ + + Sbjct: 103 EPGDRVLDVCAAPGGKATELGAKLQGKGVLMANDISNSRAKGLLKNIELFGIGNMLVLSE 162 Query: 295 EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 E + FD +L+DAPCS G R+ ++ + + QR ++ Q S Sbjct: 163 EPGKLTEYFPEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFSKIQRSIITQAASM 222 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---- 410 ++PGG++++S C+ D ++E+ ++ +L P E+ + + M + Sbjct: 223 LRPGGMMLYSTCTFDPSENEQTIEYLLEEYP-EFEICEMAGYEGFAPGMPEVTDSKNPNL 281 Query: 411 -GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +RI P +E G + L++ Sbjct: 282 AKTVRIFPHRMEGE--------GHYLALLKK 304 >gi|296876748|ref|ZP_06900796.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC 15912] gi|296432250|gb|EFH18049.1| NOL1/NOP2/sun family protein [Streptococcus parasanguinis ATCC 15912] Length = 434 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 20/260 (7%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + V + A G+ + Q+ +A I Q+ + Sbjct: 35 RTNPLKEAQKVFDDPIPNTPWGHYGKVSGKSIEHATGLVYSQEPAAQIVAQVAQPKPGMK 94 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299 VLDL AAPGGKT Q + + + + ++ K R + L N++R + D Sbjct: 95 VLDLAAAPGGKTTQLLSYLDNQGLLVSNEIHKGRSKILVENVERFGARNVLVTNESADRL 154 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +++DAPCS G R+ PD + + + + QR++L + + GG Sbjct: 155 AKVFSGFFDLIVLDAPCSGEGMFRKQPDAMDYWSVEYPRECSLLQREILEDALKMLVQGG 214 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S C+ +++EE+V +L + + +E + + + ID R+ P Sbjct: 215 SLVYSTCTWAPEENEEIVSWLLENYDLELETIEKINGMAEGIDYPETA------RMYPHR 268 Query: 420 LEKIDGVSSGMDGFFAVALR 439 + F R Sbjct: 269 FKGEGQ--------FVAKFR 280 >gi|283769352|ref|ZP_06342251.1| NOL1/NOP2/sun family protein [Bulleidia extructa W1219] gi|283104009|gb|EFC05393.1| NOL1/NOP2/sun family protein [Bulleidia extructa W1219] Length = 437 Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 26/259 (10%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L G KE + I + G +++Q+ASAS + L VLD+CAAP Sbjct: 55 LKRSPFCPNGAYFKEGIQPIH-FASYRNGGFYMQEASASSVISLLKIQPGDYVLDMCAAP 113 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--F 307 G KT Q + + + + +R L N+ R L ++ D + F Sbjct: 114 GSKTTQIGEYLQQEGLLVSNEYVSKRAMILLENIIRHGLQNALVLNCDTSLLAKEFPSGF 173 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D ++VDAPCS G + D + D I A Q +L + ++ GG +++S C+ Sbjct: 174 DKIVVDAPCSGEGLFLKQEDSVQEWSLDHIAVCAKRQASILENAYTCLRKGGDLLYSTCT 233 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 ++++E++++ L+ +ELVP+ + + + E RI P Sbjct: 234 FAREENEDLIEAFLKKH-ADMELVPITVPFGRPGFLPF----EKTRRIFP---------- 278 Query: 428 SGMDGF---FAVALRRLIQ 443 MDG F L + + Sbjct: 279 --MDGGTGQFMALLHKKGE 295 >gi|241958548|ref|XP_002421993.1| multisite-specific tRNA:m5c-methyltransferase, putative; tRNA (cytosine-5-)-methyltransferase, putative [Candida dubliniensis CD36] gi|223645338|emb|CAX39994.1| multisite-specific tRNA:m5c-methyltransferase, putative [Candida dubliniensis CD36] Length = 747 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272 Q+A + IP L + VLD+CAAPG KTAQLI V A D Sbjct: 189 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHAEDEKKLPTGFVLANDSD 248 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS T+R+ Sbjct: 249 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNSSQDLKFDRILCDVPCSGDATMRK 308 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E +V LR Sbjct: 309 NLNVWKDFRVGNALGLHNVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 368 Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410 + LV +++ A+ + + A E Sbjct: 369 GDQIRLVNVDNELPGLKRRKGVSEWKVYGKDMELREPGAEDVPQTAFPPTKEEAEKFHLE 428 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R+ P + GFF ++ Sbjct: 429 NCVRVYPHLQ--------NTGGFFITVFEKV 451 >gi|302871979|ref|YP_003840615.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor obsidiansis OB47] gi|302574838|gb|ADL42629.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor obsidiansis OB47] Length = 455 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 126/307 (41%), Gaps = 19/307 (6%) Query: 146 SIIPEWFKERLENF--YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV---MLPT 200 +PE F +++ E+ + I + + T K +E + K+ + Sbjct: 1 MNLPEEFLSKMKEILKEEFEQFIKIYEFDSYKGFRVNTAKVSVEEFVEKMGIEFEKVPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + P + G+ ++Q+ SA PV+ VLDLCAAPGGK+ Q Sbjct: 61 KDGFYYTEEIKLSKHPYYFAGLIYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQIA 120 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAP 315 + + + DV R++ L N++ L L ++ + FD +LVDAP Sbjct: 121 ARLGQNGLLVSNDVKPTRIKALVKNVENLGLTNVVVLNNKPKEIAESYGAYFDKILVDAP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P ++ K QR ++ + +K GG +V+S C+ + +++EE Sbjct: 181 CSGEGMFRKDPTTAKKWTSNHPEKYVNLQRSIMTEVDELLKVGGEIVYSTCTFEIEENEE 240 Query: 376 VVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 ++ L+ V + + I++ + + +RI P + G F Sbjct: 241 IIDWFLKKHKNYEVVEIKKYEGFSDGIEINGNENLKKAVRIYPHRVRGE--------GHF 292 Query: 435 AVALRRL 441 L+++ Sbjct: 293 ICKLKKV 299 >gi|251782474|ref|YP_002996776.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391103|dbj|BAH81562.1| putative 23S rRNA m(5)C methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 436 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 116/301 (38%), Gaps = 25/301 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P+ F + + G E ++ V K + Sbjct: 1 MMPLPKEFIDTYHSILGHETQAFLASFQQEA------VNAFRVNPLKKQSKFFEDPIPNT 54 Query: 205 LKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LI 260 L + P G+ + Q+ +A + Q+ VLDL AAPGGK+ + Sbjct: 55 LWGYYGKVSGKSPEHVSGLVYSQEPAAQMVAQVAAPKKGSRVLDLAAAPGGKSTHLLSYL 114 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSS 318 + + + ++SK+R + L N++R ++ + + FD ++ D PCS Sbjct: 115 DNTGLLVSNEISKKRSKILVENIERFGARNVIVMNESANRLAKVFTQYFDMIVFDGPCSG 174 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ PD + D + A Q+ +L +S +KPGG ++++ C+ +++E VV+ Sbjct: 175 EGMFRKDPDAIQYWHQDYPAECAALQKSILEDTLSMLKPGGELIYATCTWSLEENEGVVK 234 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +L + +ELV + A + + R+ P + F Sbjct: 235 WLLETY-DFLELVDIPKANGMVEGIGFSELA----RMYPHRYKGEGQ--------FVAKF 281 Query: 439 R 439 + Sbjct: 282 K 282 >gi|291087690|ref|ZP_06572059.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1] gi|291074339|gb|EFE11703.1| NOL1/NOP2/sun family protein [Clostridium sp. M62/1] Length = 565 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 128/337 (37%), Gaps = 29/337 (8%) Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY- 177 + E ++PE F+E++ GKE + Sbjct: 73 SLRGVRPETGDSAETEIRTENAPGCRAELLPEDFREKMRKLLGKEYEAYLESFEKPCHNG 132 Query: 178 IDLTVKFDIETWAHKLNA--------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + ++L+ + E E P + G++++Q+ S Sbjct: 133 LRVNTMKLSAEDWNRLSPFQTEPVPWIENGFYYYASDEGSERPSRYPYYYAGLYYLQEPS 192 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRL 286 A P L VLD+CAAPGGK+ +L + + D+S R + L NL+ Sbjct: 193 AMTPANLLPVKPGDRVLDICAAPGGKSTELGARLGGEGLLFSNDISNSRAKALLKNLEMA 252 Query: 287 HLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + FD +LVDAPCS G RR PD++ + Q Sbjct: 253 GIPNICVSSEAPEKLSEFLPEFFDCILVDAPCSGEGMFRREPDMIKSYRERGPEDYVPLQ 312 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNSAYWKSIDM 403 R ++ + + ++PGG +++S C+ D++++E ++ +L P + +P + + I M Sbjct: 313 RAIMEEAVKMLRPGGYLLYSTCTFDREENEGTIRYILDRHPDMSLCSLPHRHGFAEGIGM 372 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R+ P +E G F LRR Sbjct: 373 PE------CVRLFPHRIEGE--------GHFVALLRR 395 >gi|224025682|ref|ZP_03644048.1| hypothetical protein BACCOPRO_02422 [Bacteroides coprophilus DSM 18228] gi|224018918|gb|EEF76916.1| hypothetical protein BACCOPRO_02422 [Bacteroides coprophilus DSM 18228] Length = 480 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 16/302 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +P F R G+E A+ +A + + + + + + Sbjct: 1 MMNLPAEFMARTRQLMGEEACTALCEALQQESPVSIRLNPLKSSGIPAGSKPVAWCRDGY 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASAS--IPVQLFGTLNNLSVLDLCAAPGGKTAQLI-- 260 + P F GV++VQ+A++ V +LDLCAAPGGK+ Sbjct: 61 YLSERPAFTFDPLFHAGVYYVQEAASMSLDLVMRRYVGRPSVMLDLCAAPGGKSTLAAAA 120 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 G+ + + +V + R + L NL + A + D D+ P +FD +L D PCS Sbjct: 121 LPQGSLLVSNEVMRNRSQVLAENLVKWGNPAGIVTSNDPADFTPLGPVFDVILTDVPCSG 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + D++ Q+++L +KPGG++++S C+ +++++E+ V Sbjct: 181 EGMFRKDPVAVEEWSVDNVGLCWQRQQRILRDIWPCLKPGGLLIYSTCTYNREENEDNVA 240 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + R + VP+ ++ + ++ P R P G F L Sbjct: 241 WIARELGAEILPVPVEESWQITGNLTGQDFP--VCRFLPHKTCGE--------GLFLAVL 290 Query: 439 RR 440 R+ Sbjct: 291 RK 292 >gi|146325703|sp|A1RIZ0|RSMF_SHESW RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|257096820|sp|A4Y7J8|RSMF_SHEPC RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 486 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 21/257 (8%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 74 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQ 133 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 134 IAALMHNSGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L +D++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 194 APCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + ++ V+ L+ + A +PEG++ + P + + GF Sbjct: 254 QGVCEYLKQTYGDAVQFESLSDLFE---GAERATTPEGFLHVWPQIYDSE--------GF 302 Query: 434 FAVALRRLI-----QPK 445 F L + QP+ Sbjct: 303 FVAKLTKTASVPRLQPE 319 >gi|302347987|ref|YP_003815625.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans 345-15] gi|302328399|gb|ADL18594.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans 345-15] Length = 335 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 125/319 (39%), Gaps = 32/319 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH----------K 192 A + ER G + + +A P+ L + + Sbjct: 28 AQKYGYLPYIVERYLELLG-DEAEDLLEANEVPMPETLRCNDFKISCGELESRLGEAGFE 86 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L V G + P S + + +G +++QD + + V + + ++LD+ AAP Sbjct: 87 LERVPFLPHGYHVISSPISPGATHEYLKGYYYLQDPGSMLIVYVMNPRPSATILDMAAAP 146 Query: 253 GGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 GGK+ Q++ A++ + R++ LR NL R+ +I DA Sbjct: 147 GGKSTQILQLTRDSSLLIAVEPKRERIKALRSNLQRMGFSNYILIRSDARFLSLDTKPAQ 206 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAP S G IR+ + D+ + Q +LL + +S V PGG V ++ CS Sbjct: 207 VLLDAPSSGEGIIRKDKNRKTKTSISDLRRIHELQVELLNRALSIVSPGGTVTYAACSTA 266 Query: 370 KQDSEEVVQKVLR-------SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ E V KVL P PL+ + + + +G R+ P Sbjct: 267 VEEGEYTVHKVLADKDYVTTERPFGF---PLSKPFEEYRGVIFDDRVKGCGRLFPH---- 319 Query: 423 IDGVSSGMDGFFAVALRRL 441 G +GFF LRRL Sbjct: 320 ----KQGTEGFFICKLRRL 334 >gi|301164440|emb|CBW23998.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 472 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E G E +S A + + A + Sbjct: 1 MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260 L + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240 Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E +PL W + R P + GFF Sbjct: 241 TWI--RQEFGAEPLPLAVPTEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290 Query: 437 ALRR 440 ALR+ Sbjct: 291 ALRK 294 >gi|60682975|ref|YP_213119.1| hypothetical protein BF3517 [Bacteroides fragilis NCTC 9343] gi|60494409|emb|CAH09205.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 472 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E G E +S A + + A + Sbjct: 1 MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260 L + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVVVTNNDPSDFSRIGSFFDVILTDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240 Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E +PL W + R P + GFF Sbjct: 241 TWI--RQEFGAEPLPLAVPTEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290 Query: 437 ALRR 440 ALR+ Sbjct: 291 ALRK 294 >gi|120598615|ref|YP_963189.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. W3-18-1] gi|146293306|ref|YP_001183730.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella putrefaciens CN-32] gi|120558708|gb|ABM24635.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. W3-18-1] gi|145564996|gb|ABP75931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella putrefaciens CN-32] gi|319426606|gb|ADV54680.1| RNA methylase, NOL1/NOP2/sun family [Shewanella putrefaciens 200] Length = 505 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 112/257 (43%), Gaps = 21/257 (8%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 93 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQ 152 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 153 IAALMHNSGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L +D++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 213 APCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + ++ V+ L+ + A +PEG++ + P + + GF Sbjct: 273 QGVCEYLKQTYGDAVQFESLSDLFE---GAERATTPEGFLHVWPQIYDSE--------GF 321 Query: 434 FAVALRRLI-----QPK 445 F L + QP+ Sbjct: 322 FVAKLTKTASVPRLQPE 338 >gi|166031892|ref|ZP_02234721.1| hypothetical protein DORFOR_01593 [Dorea formicigenerans ATCC 27755] gi|166028345|gb|EDR47102.1| hypothetical protein DORFOR_01593 [Dorea formicigenerans ATCC 27755] Length = 461 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 128/312 (41%), Gaps = 27/312 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAVML 198 +PE F++++ + ++ I+ P Y L V + + ++ + Sbjct: 1 MRLPENFEKKMRDLLKEDFDDYIACY-EEPRYYGLRVNTNKISVEEFKKICPFEIEPIPW 59 Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 G + P + G++++Q+ SA P VLD+CAAPGGK + Sbjct: 60 IENGFYYDGEHVTPSKHPYYFAGLYYLQEPSAMTPANRLPVEPGDKVLDVCAAPGGKATE 119 Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVD 313 + + A D+S R + L N++ + + E + + FD +L+D Sbjct: 120 LGAKLQGEGVLAANDISNSRAKGLLKNIEVFGIGNVLVLSEEPGKMESYFTEYFDKILID 179 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS G R+ ++ + Q+ ++LQ +K GG++++S C+ D +++ Sbjct: 180 APCSGEGMFRKDKKMVSAWEEHGPDFFCNIQKSIILQAARMLKQGGMMLYSTCTFDPKEN 239 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-----ALSPEGWIRITPDMLEKIDGVSS 428 E+V++ +L++ P ++ + M S +RI P ++ Sbjct: 240 EQVIEHLLKTYP-EFRILKIAPYEGFVQGMPEVTESRDPSLADTVRIFPHKMKGE----- 293 Query: 429 GMDGFFAVALRR 440 G + +++ Sbjct: 294 ---GHYLALVQK 302 >gi|290580429|ref|YP_003484821.1| hypothetical protein SmuNN2025_0903 [Streptococcus mutans NN2025] gi|254997328|dbj|BAH87929.1| conserved hypothetical protein [Streptococcus mutans NN2025] Length = 434 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 116/298 (38%), Gaps = 25/298 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P+ F E+ + G + + P++ T E + G Sbjct: 3 LPDKFVEKYQTILGSKAKTFLKSFDQEPIWAFRTNPLKKEQLLFEDAIPNTVWGHYGKVF 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264 + G+ + Q+ +A + VQ + VLDL AAPGGKT + + Sbjct: 63 GKSA-----EHVSGLVYSQEPAAQMVVQAAAPQKGMKVLDLAAAPGGKTTHLLSYLDNSG 117 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTI 322 + + D+SK+R L N++R + + FD +++DAPCS G Sbjct: 118 ILVSNDISKKRSRILVENVERFGARNVVVTNESPQNLAKVFGNYFDLIVLDAPCSGEGMF 177 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ P + V+ A Q+K+L + + + GG +V+S C+ +++E V++ +L Sbjct: 178 RKDPAAIQYWHEAYPVECAELQKKILAEAMKMLAAGGKLVYSTCTWAPEENEAVIRWLLS 237 Query: 383 SSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + VP + + IDM R+ P + + F LR Sbjct: 238 QYDYLELVNVPKLNGMVQGIDMPQVA------RMYPHLFKGEGQ--------FIAKLR 281 >gi|326917198|ref|XP_003204888.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like [Meleagris gallopavo] Length = 791 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 120/359 (33%), Gaps = 64/359 (17%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 L+ Y +E D + L+ + W L+ +L + Sbjct: 81 HAREILHCLKEKYFRELQHLEVDGQKVEMPQALSWYPEELAWHTNLSRKILRKSPQLERF 140 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------A 257 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 141 HQFLVSETE---CGNISRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADM 197 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307 + V A DV +R L RL+ ++ DA + Sbjct: 198 NVPFPKGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQIDVDGRKEILFY 257 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CS Sbjct: 258 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 317 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-------------- 413 L+ ++E V+ +L S +EL ++S M + + Sbjct: 318 LNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPS 377 Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 378 NRQTQIRPTMFPIKEEEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPWNKRQPK 436 >gi|296089949|emb|CBI39768.3| unnamed protein product [Vitis vinifera] Length = 208 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 20/171 (11%) Query: 286 LHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 + + + D + D VL+DAPCS TG I + V ++ +DI K A Sbjct: 1 MGVTNTVVCNYDGKELPKVLGHNTVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCAH 60 Query: 343 FQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNS 395 Q++L+L I V K GG +V+S CS+ ++E V+ L+ + + L Sbjct: 61 LQKQLILAAIDMVDANSKSGGYIVYSTCSIMIPENEAVIDYALKKRNVKLVPCGLDFGRP 120 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL--IQP 444 + + + S E R P + MDGFF L+++ +P Sbjct: 121 GFTRFREHRFHQSLEKTRRFYPHV--------HNMDGFFVAKLKKMSNSKP 163 >gi|110668543|ref|YP_658354.1| tRNA and rRNA cytosine-C5-methylases [Haloquadratum walsbyi DSM 16790] gi|109626290|emb|CAJ52748.1| tRNA and rRNA cytosine-C5-methylases [Haloquadratum walsbyi DSM 16790] Length = 312 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 103/267 (38%), Gaps = 31/267 (11%) Query: 194 NAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + +G +L+ I P F G Q+ + +P V D CAAPG Sbjct: 53 EPIGWHSGLFKLETNRPGIS-WPYFH-GWLHGQEEVSVLPALAVDPDPGEIVWDACAAPG 110 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---- 306 KT QL + V D + RL LR N +RL + + DA ++ Sbjct: 111 SKTTQLAALMDDTGVVIGNDNNLGRLSALRHNAERLGVTNLVVTNQDARNFSFNPFGGRT 170 Query: 307 --------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 FD LVDAPCS GTIR++PD + ++ Q+ +L + + +PG Sbjct: 171 ERANRIEAFDHALVDAPCSCEGTIRKNPDAFEQWSREHVMSVVAIQKDILRRAVQATRPG 230 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------EGW 412 G VV+S C+ +++E VV VL S V + + + + E Sbjct: 231 GTVVYSTCTFAPEENEGVVNHVLESESCRVVQWNPPAGFKTISGITHWDNESYDPSMELT 290 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALR 439 R+ P + GFF L Sbjct: 291 HRVYPHH--------NDTGGFFCAKLE 309 >gi|146422052|ref|XP_001486968.1| hypothetical protein PGUG_00345 [Meyerozyma guilliermondii ATCC 6260] Length = 674 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272 Q+A + IP L + +V D+CAAPG KTAQ V A D Sbjct: 158 ISRQEAVSMIPPLLMDIKPHHAVFDMCAAPGSKTAQLVEALHAEDEKKAPTGFVLANDSD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS GT+R+ Sbjct: 218 YKRSHMLVHQVKRLNSPNFMVVNHDAQLFPKIKLNGASEFLKFDRILCDVPCSGDGTMRK 277 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E VV LR Sbjct: 278 NVNVWKDFTVGNALGLHLLQVNILNRGLQLLKKGGRLVYSTCSLSPVENEAVVAAALRKW 337 Query: 385 PIPVELVPLNS----------------------------------AYWKSIDMAMALSPE 410 ++LV + A+ S A E Sbjct: 338 GAQIKLVNCDDELPGLVRRKGLSTWKVLGKDMEEKEKGAEGIPETAFPPSETEAGEFHLE 397 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 IR+ P + GFF ++ Sbjct: 398 NCIRVYPHLQ--------NTGGFFITVFEKI 420 >gi|71896598|ref|NP_001026175.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Gallus gallus] gi|82082708|sp|Q5ZLV4|NSUN2_CHICK RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName: Full=NOL1/NOP2/Sun domain family member 2 gi|53128302|emb|CAG31289.1| hypothetical protein RCJMB04_4l11 [Gallus gallus] Length = 796 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/359 (20%), Positives = 120/359 (33%), Gaps = 64/359 (17%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 L+ Y +E D + L+ + W L+ +L + Sbjct: 86 HAREILHCLKEKYFRELQHLEVDGQKVEMPQALSWYPEELAWHTNLSRKILRKSPQLERF 145 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------A 257 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 146 HQFLVSETE---CGNISRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADM 202 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307 + V A DV +R L RL+ ++ DA + Sbjct: 203 NVPFPKGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQVDVDGRKETLFY 262 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CS Sbjct: 263 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 322 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-------------- 413 L+ ++E V+ +L S +EL ++S M + + Sbjct: 323 LNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPS 382 Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 383 NRQTQIRPTMFPIKEEEKLKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPWNKRQPK 441 >gi|255719902|ref|XP_002556231.1| KLTH0H08096p [Lachancea thermotolerans] gi|238942197|emb|CAR30369.1| KLTH0H08096p [Lachancea thermotolerans] Length = 688 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 43/262 (16%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDVSKR 274 Q+A + IP + ++ SVLD+CAAPG KTAQ+ V A D R Sbjct: 147 ISRQEAVSMIPPIVLEVESHHSVLDMCAAPGSKTAQMIEALHSSEDEPTGFVVANDADAR 206 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC---------PKKLFDAVLVDAPCSSTGTIRRH 325 R L L RL+ ++ DA + FD +L D PCS GT+R++ Sbjct: 207 RSHMLVHQLKRLNSANLVVVNHDAQFFPRVKTDKETNQFLKFDRILCDVPCSGDGTMRKN 266 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 +V T + Q +L +G++ +K GG +V+S CS++ ++E VV LR Sbjct: 267 VNVWKDWGTASGLGLHTVQLNILKRGLNLLKKGGRLVYSTCSMNPIENEAVVAAALRQWG 326 Query: 386 IPVELVPLNS-----------AYWKSIDMAMALSPEGW---------------IRITPDM 419 ++LV + + W ID A +G D Sbjct: 327 DKIKLVDCSDKLPGLVRSKGISNWPVIDKAFEKKEKGDEGTTESWFPPSAEEAADFHLDR 386 Query: 420 LEKIDGVSSGMDGFFAVALRRL 441 ++ GFF + ++ Sbjct: 387 CIRVYPHQQNTGGFFITVIEKV 408 >gi|328955327|ref|YP_004372660.1| Fmu (Sun) domain protein [Coriobacterium glomerans PW2] gi|328455651|gb|AEB06845.1| Fmu (Sun) domain protein [Coriobacterium glomerans PW2] Length = 325 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 21/270 (7%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTL 240 V ++ + AV L E + + LP + G ++Q S+ +P + Sbjct: 60 VGAELSEHGIRWEAVPWYRDAFVLPESDKHEVQGLPIYENGGVYLQSLSSMLPPLALAPM 119 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLD+CAAPGGKT+Q+ A++ A ++ R +L NL +L + ++ D Sbjct: 120 PGADVLDMCAAPGGKTSQIAALTKGTARICACELHAPRAARLEHNLAKLKVSGVTLMRCD 179 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 A P FD +L+DAPC+ +GT+ L + K + Q LL + ++ +K Sbjct: 180 ARRLDPLFSFDQILLDAPCTGSGTVAAGDSRGLARITPMLLAKVSRAQAALLDRALTVLK 239 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE------ 410 GG +++S CS+ ++E+ +++ ++ +LVPL+ + PE Sbjct: 240 TGGTLIYSTCSVLPAENEDQIRRAIQRH-RDCKLVPLDDFISTGQPKSAMGIPELSVGLA 298 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G + + P + GF+ +++ Sbjct: 299 GTLTVCPTETYE---------GFYLAKIKK 319 >gi|265766860|ref|ZP_06094689.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_16] gi|263253237|gb|EEZ24713.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_16] Length = 472 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 114/304 (37%), Gaps = 19/304 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E G E +S A + + A + Sbjct: 1 MKLPISFIESTRALMGDEEYQELSVALEQEPPASVRLNSKFPGLAACSSISGRIPWAAEG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI- 260 L + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 YYLNQRLTFTFDPLFHAGCYYVQEASSMFVEQVLRRYVTTPVKMLDLCAAPGGKSTHARS 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 121 VLPEGSLLVANEVIRNRSQILAENLTKWGYADVLVTNNDPSDFSRIGSFFDVILTDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 181 GEGMFRKDPGAIEEWSPENVEICWQRQRRIITDIWPCLKPGGILIYSTCTYNTREDEENI 240 Query: 378 QKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E +PL W + R P + GFF Sbjct: 241 TWI--RQEFGAEPLPLAVPTEWNITGSLLVGVDAPVYRFLPHKTQGE--------GFFLA 290 Query: 437 ALRR 440 ALR+ Sbjct: 291 ALRK 294 >gi|297674919|ref|XP_002815453.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like isoform 1 [Pongo abelii] Length = 767 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPLKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|320581898|gb|EFW96117.1| S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase [Pichia angusta DL-1] Length = 653 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 101/271 (37%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--------VSGAKVTALDVSKR 274 Q+A + IP + VLD+CAAPG KTAQLI + + A D + Sbjct: 154 ISRQEAVSMIPPLFLEVQPHHYVLDMCAAPGSKTAQLIEALHSEGAHAPGFIVANDSDYK 213 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRRHP 326 R L + RL+ ++ DA + FD +L D PC+ GT+R++ Sbjct: 214 RSHMLVHQVKRLNSPNLVVVNHDAQLFPKMKLTPEGDYVKFDRILCDVPCTGDGTMRKNL 273 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 V + + Q +L++G+ +K GG +V+S CSL ++E VV LR Sbjct: 274 TVWKDWRIGNALGLHSLQLNILMRGLQLLKKGGRLVYSTCSLSPIENEAVVSAALRKWGG 333 Query: 387 PVELVP------------------------------------LNSAYWKSIDMAMALSPE 410 V++V NS + S + + + Sbjct: 334 KVKIVNCDNMLTGLKRRPGVSDWKVFGKDWEEKSKEDNNESLPNSVFPPSAEEVNTFNLQ 393 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R+ P GFF L ++ Sbjct: 394 DCMRVYPHDQ--------NTGGFFITVLEKV 416 >gi|332228168|ref|XP_003263267.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1 [Nomascus leucogenys] Length = 767 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 65/284 (22%), Positives = 102/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L G + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLGVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|296194965|ref|XP_002745187.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 [Callithrix jacchus] Length = 775 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVQPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQMDVGGTKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFADWDAVPHSRHTQIRPTMFPLKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|145546528|ref|XP_001458947.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426769|emb|CAK91550.1| unnamed protein product [Paramecium tetraurelia] Length = 366 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 63/408 (15%), Positives = 138/408 (33%), Gaps = 59/408 (14%) Query: 46 QILVRAIVNVTLRF----LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101 + ++ + + D+ L ++ S + ++ + ++ DV Sbjct: 4 RPFIKTHIKTIMTNFDVQRGPFDSFLREYYKNN-KTLGPSERSIISQTAFDLIRNDVLLS 62 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 + +L + + + + PE + + + YG Sbjct: 63 HFTKDVDRKC--------------DLLSHIPDYEKDQNIPLNIRCSCPEILFQLVSDQYG 108 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE---------SI 212 +++ A + + + + T + + L ++ Sbjct: 109 QKKAYEFFTALNTKAPLTIRINPIKTTREKLMMEMQNLYFKKTLTSPYGLLVSKENNVNL 168 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272 F EG++ +QD ++ I N VLD CA GGKT ++++ Sbjct: 169 SDTDQFKEGLFEIQDEASQICALRVQCKPNDKVLDYCAGSGGKTLAFAHQMEGKGVIEIN 228 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R E L RL + + K +D +L+D PC+ GT+RR+PD + Sbjct: 229 DTRSEALSKAKIRLRRAGIM----NYSFFTKKFKYDWILLDVPCTGLGTLRRNPDSKYRF 284 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q+ + Q I +++ G++V++ CS K +++ V+ + + V Sbjct: 285 SQERLNDLIKLQQDIFDQAIRYLRQDGVIVYTTCSFLKDENQNQVKHFCKKYNLSVVD-- 342 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + GMD FF+++LR+ Sbjct: 343 -------------------------NDYFQSLPEKGGMDSFFSISLRK 365 >gi|315651231|ref|ZP_07904261.1| tRNA and rRNA cytosine-C5-methylase [Eubacterium saburreum DSM 3986] gi|315486527|gb|EFU76879.1| tRNA and rRNA cytosine-C5-methylase [Eubacterium saburreum DSM 3986] Length = 471 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 18/236 (7%) Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKV 266 SI P + G++++Q+ SA P + VLDLCAAPGGK+ Q+ + Sbjct: 89 NSISKNPYYFAGLYYIQEPSAMTPASIAKIKPGDKVLDLCAAPGGKSTQIASYLQGEGLL 148 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRR 324 D S R++ L+ N++ + I D FD ++VDAPCS G RR Sbjct: 149 VTNDFSASRVKALQKNVEVSGIDNVLITNEDPKHLSEVYSEYFDKIIVDAPCSGEGMFRR 208 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 V Q +L + +K GG +V+S C+ + E + L + Sbjct: 209 DSAVFKAYLGRGPESFTGIQVGILNEAAKMLKSGGTLVYSTCTYSSIEDEGSLISFLENH 268 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + G +R+ P L+ G F L++ Sbjct: 269 NDF-----DIDRITPEFGFEESKQLPGTVRLFPHKLKGE--------GHFVARLKK 311 >gi|224045840|ref|XP_002190161.1| PREDICTED: NOL1/NOP2/Sun domain family 2 protein [Taeniopygia guttata] Length = 753 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 122/359 (33%), Gaps = 64/359 (17%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 L+ Y +E D + L + W L+ +L K Sbjct: 42 HAREILHCLKEKYFRELQDLEVDGQKVEMPQSLGWYPEELAWHTNLSRKILRKSPQLEKF 101 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--- 264 + G Q+A + IP L + VLD+CAAPG KTAQLI Sbjct: 102 HQFLVSETE---CGNISRQEAVSMIPPLLLNVSPHHKVLDMCAAPGSKTAQLIEMLHADM 158 Query: 265 -------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLF 307 V A DV +R L RL+ ++ DA + Sbjct: 159 NVPFPSGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQIDVDGRKEILFY 218 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CS Sbjct: 219 DRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCS 278 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-------------- 413 L+ ++E V+ +L S +EL ++S M + + Sbjct: 279 LNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEWKDVPS 338 Query: 414 ----RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 339 NRQTQIRPTMFPVKDEEKLKAMNLERCLRILPHHQNTGGFFVAVLIKKSPMPWNKRQPK 397 >gi|62914023|gb|AAH01041.3| NSUN2 protein [Homo sapiens] Length = 679 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 70 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 129 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 130 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 189 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 190 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 249 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 250 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 309 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 310 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 353 >gi|152149576|pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 110/272 (40%), Gaps = 23/272 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D+ K + + + + P + G +QD ++ +P L Sbjct: 46 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 105 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 106 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 165 Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354 P +L+D CS +G R T + A FQ++ L ++F Sbjct: 166 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 225 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ +V+S CSL ++++E+VV+ L+ +P L P A W ++ E + Sbjct: 226 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 281 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 R +P+ GFF + R+ P+ Sbjct: 282 RASPETTLSS--------GFFVAVIERVEVPR 305 >gi|114598922|ref|XP_517620.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2 [Pan troglodytes] Length = 767 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|153808887|ref|ZP_01961555.1| hypothetical protein BACCAC_03188 [Bacteroides caccae ATCC 43185] gi|149128713|gb|EDM19931.1| hypothetical protein BACCAC_03188 [Bacteroides caccae ATCC 43185] Length = 486 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 118/306 (38%), Gaps = 18/306 (5%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPT 200 +P F E G E + A + + + + L+ + Sbjct: 1 MKMNLPASFTEYTRALLGVEEYEKLVSALQQEPPVSIRLNRLKVHRLKVENALSVQPPWS 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQ 258 + + P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ Sbjct: 61 SEGIYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQHVTKPVVMLDLCAAPGGKSTH 120 Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 G+ + A +V + R + L NL + + D D+ FD +L D Sbjct: 121 ARSVLPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALPSFFDVILTDV 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ E Sbjct: 181 PCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADVWPSLKPGGILIYSTCTYNTKEDE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 E V+ + + V + + + ++ S + P + GFF Sbjct: 241 ENVRWIQQEFGAESLAVDIREEWNITGNLLCGESASVY-HFFPHKTKGE--------GFF 291 Query: 435 AVALRR 440 LR+ Sbjct: 292 LSVLRK 297 >gi|39995082|ref|NP_060225.4| tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1 [Homo sapiens] gi|148887180|sp|Q08J23|NSUN2_HUMAN RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName: Full=NOL1/NOP2/Sun domain family member 2; AltName: Full=Substrate of AIM1/Aurora kinase B; AltName: Full=tRNA (cytosine-5-)-methyltransferase; AltName: Full=tRNA methyltransferase 4 homolog; Short=hTrm4 gi|187950511|gb|AAI37084.1| NOL1/NOP2/Sun domain family, member 2 [Homo sapiens] Length = 767 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|313202615|ref|YP_004041272.1| fmu (sun) domain protein [Paludibacter propionicigenes WB4] gi|312441931|gb|ADQ78287.1| Fmu (Sun) domain protein [Paludibacter propionicigenes WB4] Length = 443 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 24/304 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +PE F +R G + A+ A + V + +A N V G L Sbjct: 1 MTLPEAFIKRTTELLG-DNFGALEKALGETPPTSIRVN-NKMDYAPSKNQVPWCETGYYL 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASI--PVQLFGTLNNLSVLDLCAAPGGK---TAQLI 260 E P + P F GV++VQ+AS+ + +VLDLCAAPGGK +Q + Sbjct: 59 DERPLF-TADPLFHAGVYYVQEASSMFLQQAVMQHFKEARTVLDLCAAPGGKSTLLSQAL 117 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 + + + ++ + R L NL + + + D+ FDAV+VDAPCS Sbjct: 118 SENSLLVSNEIIRSRAYILAENLIKWGNPNVVVTNNEPKDFSNLPGFFDAVVVDAPCSGE 177 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ + ++ A QR++L +K GI+V+S C+ +++++E V Sbjct: 178 GMFRKDAGAIDEWSEYNVSLCATRQREILSSVWDSLKEDGILVYSTCTFNREENENNVCW 237 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + + L + + +S + R P + GFF +R Sbjct: 238 ICEELGADLLKIDLQAN-------SDIISSDYGYRFYPHKTKGE--------GFFISVVR 282 Query: 440 RLIQ 443 + Q Sbjct: 283 KTSQ 286 >gi|146318761|ref|YP_001198473.1| rRNA methyltransferase, [Streptococcus suis 05ZYH33] gi|145689567|gb|ABP90073.1| rRNA methyltransferase, putative [Streptococcus suis 05ZYH33] Length = 341 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 89/214 (41%), Gaps = 26/214 (12%) Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MD 297 + VLDL AAPGGK+ + + + + ++S +R L N++R + D Sbjct: 1 MKVLDLAAAPGGKSTHLLSYLENTGLLVSNEISNKRARILAENIERFGARNVVVTNESAD 60 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FD +++DAPCS G R++PD + + A QR++L ++ + P Sbjct: 61 RLEKVFPGYFDMIVLDAPCSGEGMFRKYPDAIQYWSKHYPAQCASLQREILESALNMLAP 120 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 G +++S C+ +++EEVV +L + + +P + + I R+ P Sbjct: 121 DGQLIYSTCTWSPEENEEVVTWLLEQYDLELIDIPKINGMVEGIGYTEVA------RMYP 174 Query: 418 DMLEKIDGVSSGMDGFFAVALR-------RLIQP 444 F R + ++P Sbjct: 175 HHFAGEGQ--------FVAKFRFLGEASQKKLKP 200 >gi|219114260|ref|XP_002176301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217402704|gb|EEC42693.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 413 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 92/328 (28%), Positives = 144/328 (43%), Gaps = 32/328 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR +++ L + K S +D + + LS RD+ R +V T R L +ID Sbjct: 76 NARFLAARAL---ITKTGSAAFAVDRLESNKHYSTLSTRDRSFARLLVTTTERRLGQIDE 132 Query: 66 VLDFV---LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN---RH 119 VL S R +Q LR+ Q+L+L V ++A V VE + D + Sbjct: 133 VLRQCQKETKSRPNRVDQFVQAALRIGATQLLFLKVPEHAAVKETVELLRHDPKTTVPES 192 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 K VN++LRR+SRE LL W + + +G+E I + Sbjct: 193 RIKFVNAVLRRISREGDVLLATTDVTQNASPWLVKEWQKSWGEEATRKIVALAMEETPRV 252 Query: 180 LTVKFDIETWAHKLNA-------------VMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 LT+K + K ++ P SI++ P ++EG WW+Q Sbjct: 253 LTIKQHPGSQLEKPMGRIKAVAALFEDSEILPQGSVRVNTSPPGSIINWPEYSEGSWWLQ 312 Query: 227 DASASIPVQLFGTLNNL---------SVLDLCAAPGGKTAQLIVSGA-KVTALDVSKRRL 276 DA+A+ P + V+D+CA+PGGKTAQL G VTA++V+++R Sbjct: 313 DAAATTPAIALYNALSKNGETSVAGLDVVDMCASPGGKTAQLWNYGFASVTAVEVAEKRT 372 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 E+LR N+ RL++ E ++ A Sbjct: 373 ERLRQNMQRLNMDCEVVVADGAQWTSQH 400 >gi|115501316|dbj|BAF34150.1| putative 5-methycytoisine methyltransferase [Homo sapiens] Length = 767 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|215430293|ref|ZP_03428212.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] gi|289694075|gb|EFD61504.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] Length = 254 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 75/243 (30%), Gaps = 22/243 (9%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L V + +L A R + RD + T R +DA Sbjct: 15 PARRAAFETLRAVSARDAYANLVLPALL---AQRGIGGRDAAFATELTYGTCRARGLLDA 71 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+ S L LLR+ Q+L V +A V VEQA + + A VN Sbjct: 72 VIGAAAERSPQAIDPVLLDLLRLGTYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVN 130 Query: 126 SILRRVSREKIELLQ-------------RIAGISIIPEWFKERLENFYGKE--RVLAISD 170 +LR ++ A + P W + + G + A+ Sbjct: 131 GVLRTIAGRDERSWVGELAPDAQNDPIGHAAFVHAHPRWIAQAFADALGAAVGELEAVLA 190 Query: 171 ACISPLYIDLTVKFDIETWAH---KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + L + + T + + + L +G VQD Sbjct: 191 SNDERPAVHLAARPGVLTAGELARAVRGTVGRYSPFAVYLPRGDPGRLAPVRDGQALVQD 250 Query: 228 ASA 230 +A Sbjct: 251 EAA 253 >gi|89074302|ref|ZP_01160792.1| putative sun/nucleolar protein family protein [Photobacterium sp. SKA34] gi|89050006|gb|EAR55540.1| putative sun/nucleolar protein family protein [Photobacterium sp. SKA34] Length = 476 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 122/266 (45%), Gaps = 21/266 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L V G ++ E + + G++++Q+AS+ +PV NN Sbjct: 57 ANRGWTLTPVPWCDTGFWIEREDEDTVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNNA 116 Query: 244 SVL--DLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 D+ +APG KT Q+ + + + A +++ R++ L NL R ++ + D Sbjct: 117 LDCVLDMASAPGSKTTQIASAMQNRGALVANELAASRIKVLHSNLQRCGVHNAALTHFDG 176 Query: 299 FDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + + FD++L+DAPCS G IR+ D + I + A QR L++ +K Sbjct: 177 CVFGTWAPESFDSILLDAPCSGEGAIRKDEDAMANWSLASIDEIAEVQRNLIISAFQALK 236 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G++V+S C+L++ ++++V + VE PLN+ + +L+ +G++ + Sbjct: 237 TSGVMVYSTCTLNQSENQDVCHFLKEKFGDAVEFEPLNTLF---DGADKSLTEDGFLHVY 293 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLI 442 P + + GFF +R+L Sbjct: 294 PQVFDSE--------GFFVARIRKLA 311 >gi|114047240|ref|YP_737790.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-7] gi|113888682|gb|ABI42733.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-7] Length = 510 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL +APG Sbjct: 93 WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 152 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 153 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 212 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC GT+R+ D L + D++++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 213 VLIDAPCGGEGTVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 272 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ L+ + A +PEG++ + P + + Sbjct: 273 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 323 Query: 430 MDGFFAVALRR-----LIQPK 445 GFF L + +QP+ Sbjct: 324 --GFFVAKLTKTRSVPRLQPE 342 >gi|157822221|ref|NP_001101873.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Rattus norvegicus] gi|149032756|gb|EDL87611.1| NOL1/NOP2/Sun domain family, member 2 (predicted) [Rattus norvegicus] Length = 782 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 183 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 242 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 243 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 302 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 303 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 362 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 363 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWQEVPQGRHTQIRPTMFPPKD 422 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 423 LDKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 466 >gi|329957792|ref|ZP_08298267.1| NOL1/NOP2/sun family protein [Bacteroides clarus YIT 12056] gi|328522669|gb|EGF49778.1| NOL1/NOP2/sun family protein [Bacteroides clarus YIT 12056] Length = 495 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 119/302 (39%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + G E + A S + + + + + Sbjct: 1 MELPASFIDYTRALLGDEEYTELVTALESEQPVSIRLNPLKPFGFQSGESAVPWCTSGFY 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL---NNLSVLDLCAAPGGKTAQLI-- 260 + + P F G ++VQ+AS+ Q +LDLCAAPGGK+ + Sbjct: 61 LKERLTFTFDPLFHAGCYYVQEASSMFVEQALRQYAGEEPAVMLDLCAAPGGKSTHVRGI 120 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 + + A +V + R + L NL + + D D+ P ++ FD +L D PCS Sbjct: 121 LPENSLLVANEVIRNRSQILAENLTKWGHPDVVVTNSDPSDFTPLEEFFDVILTDVPCSG 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + ++++ QR+++ +KPGG++++S C+ + +++EE V+ Sbjct: 181 EGMFRKDPVAVSEWSSENVEICRQRQRRIISDIWPCLKPGGLLIYSTCTYNTKENEENVR 240 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + V + + + + ++ R P + GFF L Sbjct: 241 WIKDEFGAEVLPLDVAEDWNITGNLLQGE-RFPVYRFLPHKTKGE--------GFFLAVL 291 Query: 439 RR 440 R+ Sbjct: 292 RK 293 >gi|296131695|ref|YP_003638942.1| Fmu (Sun) domain protein [Thermincola sp. JR] gi|296030273|gb|ADG81041.1| Fmu (Sun) domain protein [Thermincola potens JR] Length = 464 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 39/305 (12%) Query: 146 SIIPEWFKERLENFYGKERVLAISD------ACISPLYIDLTVKFDIETWAHKLNAVMLP 199 +P F ++E G + A + + ++ + E V Sbjct: 1 MRLPPAFLTKMEQQLGSNFARFLQSYTEPRTAGLRANTLKISPEALQELLPFLQERVSWC 60 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 G E LP + G++++Q+ SA +P +L VLDLCAAPGGK+ QL Sbjct: 61 RDGFYYNEEEVRPAKLPHYYAGLYYIQEPSAMLPAELLQVQPGERVLDLCAAPGGKSLQL 120 Query: 260 IVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDA 314 + D +R + L N++R + + + FD +LVDA Sbjct: 121 AAHLGKAGLLVVNDPHPQRAKVLLKNIERYGVINAVVLSETPQRLAHIFADFFDKILVDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ P++ ++ K A +Q +L ++PGG VV+S C+ ++++E Sbjct: 181 PCSGEGMFRKEPEMAKDWSEAEVAKYAKWQAAILEHIPQMLRPGGEVVYSTCTFSREENE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 + V + L + P L R+ P + G F Sbjct: 241 QQVLRFLGAFPDFELLE--------------------MRRLWPHEVRGE--------GHF 272 Query: 435 AVALR 439 A ++ Sbjct: 273 AAKIK 277 >gi|325001359|ref|ZP_08122471.1| ribosomal RNA small subunit methyltransferase [Pseudonocardia sp. P1] Length = 280 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 86/276 (31%), Gaps = 29/276 (10%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + LL+ V + L R L + TLR +D Sbjct: 4 PARQAAYDLLTAVREREAYANLALPGILRRYRLRDRDA---ALATELGYGTLRAQGLLDT 60 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 V+D L + ++ L LR+ Q+L V +A V VE + D ++ A VN Sbjct: 61 VIDACTDRPLSKIEHPLLDALRLGAYQLLRTRVPAHAAVSTCVELVRGDHGSQS-AGFVN 119 Query: 126 SILRRVSREKIELLQRI-------------AGISIIPEWFKERLENFYGKERVLAISDAC 172 ++LRR+ A P W + + G + Sbjct: 120 AVLRRIGEHDEAEWLDRLAPDPAEDPVGNAALRHAHPRWIAQAFADSLGDTGEELTAALA 179 Query: 173 ISPLYIDLTVKFDIETWAHKL-------NAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + + G+ L+ I L AEG+ V Sbjct: 180 ADDARPRVHLLARPGEISAEELALATGGEEAPWSPYGVHLEPGSGDIGELDAVAEGLALV 239 Query: 226 QDASASIPVQLFGT-----LNNLSVLDLCAAPGGKT 256 QD + + + LDLCA PGGK Sbjct: 240 QDEGSQLVAAALARAELLGEDTGRWLDLCAGPGGKA 275 >gi|26326103|dbj|BAC26795.1| unnamed protein product [Mus musculus] Length = 691 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 92 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 151 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 152 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 211 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 212 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 271 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 272 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 331 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 332 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 375 >gi|74140144|dbj|BAE33793.1| unnamed protein product [Mus musculus] Length = 465 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/405 (18%), Positives = 149/405 (36%), Gaps = 29/405 (7%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A++ T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALMCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + ++ R +P + + ++ + Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFVRVNTLKTRPEDAID 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D+ + + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ + + K+ A D +RL + + Sbjct: 212 DKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLV 271 Query: 284 DRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G + R T + + Sbjct: 272 ARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQLEEHGEGTPSKERL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 A FQ++ L + F ++ +V+S CSL ++++E+VVQ+ L+ + L P+ Sbjct: 332 QALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEENEDVVQEALQHNSGTFRLAPVLP 388 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W + E +R +P+ GFF R Sbjct: 389 T-WPHRGLNTFPGSEHCLRASPETTL--------TGGFFIAVFER 424 >gi|156848874|ref|XP_001647318.1| hypothetical protein Kpol_1002p109 [Vanderwaltozyma polyspora DSM 70294] gi|156118003|gb|EDO19460.1| hypothetical protein Kpol_1002p109 [Vanderwaltozyma polyspora DSM 70294] Length = 670 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 64/265 (24%), Positives = 102/265 (38%), Gaps = 46/265 (17%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------TALDVSKR 274 Q+A + IP + + +VLD+CAAPG KTAQLI + A D + Sbjct: 147 ISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHMEDDEPSGFVVANDADAK 206 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTI 322 R L L RL+ ++ DA + FD VL D PCS GT+ Sbjct: 207 RSHMLVHQLKRLNSANLMVVNHDAQFFPRIKLHEDATQKKDVLRFDRVLCDVPCSGDGTM 266 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ +V +T + Q +L +G+ +KP G +V+S CS++ ++E VV LR Sbjct: 267 RKNVNVWRDWNTQSGLGLHTVQLNILNRGLHLLKPKGRLVYSTCSMNPIENEAVVAAALR 326 Query: 383 SSPIPVELVPLNSAYWK--------------------------SIDMAMALSPEGWIRIT 416 + LV + +++ A +PE + Sbjct: 327 KWGDKIRLVNCDDKLPGLVRSKGISTWPVVDRNMEEKKKGDENTVESWFAPTPEEAEKFD 386 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 ++ GFF +L Sbjct: 387 LSSCIRVYPHQQNTGGFFITVFEKL 411 >gi|317475459|ref|ZP_07934723.1| NOL1/NOP2/sun family protein [Bacteroides eggerthii 1_2_48FAA] gi|316908487|gb|EFV30177.1| NOL1/NOP2/sun family protein [Bacteroides eggerthii 1_2_48FAA] Length = 492 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 124/305 (40%), Gaps = 22/305 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + N G E + ++ A + + + + + Sbjct: 1 MELPVLFTDYTRNLLGDEDYMRLTAALEAEQPVSIRLNPLKPFAFQLGEDEVPWCASGFY 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI-- 260 + + P F G ++VQ+AS+ Q+ +LDLCAAPGGK+ + Sbjct: 61 LKERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQHWGEEPAVMLDLCAAPGGKSTHVRSI 120 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 + + A +V + R + L NL + + D D+ K LFD +L D PCS Sbjct: 121 LPENSLLIANEVIRNRSQILAENLAKWGHTGVVVTNNDPSDFTSLKDLFDIILTDVPCSG 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + +++ QR+++ +KPGGI+++S C+ + +++EE ++ Sbjct: 181 EGMFRKDPVAVSEWSLENVEVCWRRQRRIISDIWPCLKPGGILIYSTCTYNTKENEENIR 240 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE---KIDGVSSGMDGFFA 435 + E++PL+ A ++ + P + + +GFF Sbjct: 241 WI--RDEFGAEVLPLDVAE------DWNITGN----LLPGEHFPVYRFLPYKTKGEGFFM 288 Query: 436 VALRR 440 LR+ Sbjct: 289 AVLRK 293 >gi|291519092|emb|CBK74313.1| tRNA and rRNA cytosine-C5-methylases [Butyrivibrio fibrisolvens 16/4] Length = 439 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 33/259 (12%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + A L + + + P A GV+++QDASA +PV++ + L Sbjct: 50 DKMASVLTGKVDWSKNGYYYDEESRPGLHPYHAAGVYYIQDASAQLPVEMLAPVPGDYCL 109 Query: 247 DLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDY 301 DLCAAPGGK+ Q+ + + + K R + L N++RL + + D Sbjct: 110 DLCAAPGGKSTQIAGYLKGEGILVSNEPIKNRAKILSENVERLGIKNCIVTSEYPDKLSE 169 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD ++VDAPCS G R++ D + + A Q ++L + + PGG + Sbjct: 170 VFTEYFDRIMVDAPCSGEGMFRKNHDACTEWSLESVEMCAARQAEILDRAYEMLIPGGRM 229 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 +S C+ K + EEVV + P + R+ P ++ Sbjct: 230 CYSTCTFAKLEDEEVVASFISRHPDMSLIEE--------------------RRLWPHEVK 269 Query: 422 KIDGVSSGMDGFFAVALRR 440 G +A L + Sbjct: 270 GE--------GHYAALLEK 280 >gi|146325702|sp|Q0HVX2|RSMF_SHESR RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 482 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL +APG Sbjct: 65 WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 124 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC GT+R+ D L + D++++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 185 VLIDAPCGGEGTVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 244 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ L+ + A +PEG++ + P + + Sbjct: 245 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 295 Query: 430 MDGFFAVALRR-----LIQPK 445 GFF L + +QP+ Sbjct: 296 --GFFVAKLTKTRSVPRLQPE 314 >gi|148705069|gb|EDL37016.1| NOL1/NOP2/Sun domain family 2, isoform CRA_b [Mus musculus] Length = 691 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 92 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 151 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 152 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 211 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 212 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 271 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 272 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 331 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 332 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 375 >gi|317486223|ref|ZP_07945057.1| NOL1/NOP2/sun family protein [Bilophila wadsworthia 3_1_6] gi|316922522|gb|EFV43774.1| NOL1/NOP2/sun family protein [Bilophila wadsworthia 3_1_6] Length = 425 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 19/234 (8%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272 SL F G ++QD S+ +P VLD+CA+PG KT L + + + Sbjct: 55 RSLAAFW-GYVYIQDRSSMLPPLALAPGEGARVLDMCASPGSKTGLLAQLVGREGLVLGN 113 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLFDAVLVDAPCSSTGTIRRHP 326 + +L R +L A ++++ + P +DAVL+D PCS GT ++P Sbjct: 114 EPARPRLANL--RRNLAALNLLQAVTCSWPGESLPLPDASWDAVLLDPPCSGWGTTDKNP 171 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + D + QRKLL + ++PGG +V+S C+ + ++E V+ + + Sbjct: 172 QAIKRWQGDRLKPMLDLQRKLLTEASRLLRPGGKLVYSTCTTNVDENEGQVRFAVE--GL 229 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +E +PL EG +R+ D +S GF+ LR+ Sbjct: 230 GLEPIPLEPFPGFVFAAPELPGCEGTLRV--------DEGASNAQGFYIALLRK 275 >gi|114598926|ref|XP_001143653.1| PREDICTED: NOL1/NOP2/Sun domain family 2 protein [Pan troglodytes] Length = 666 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|117920217|ref|YP_869409.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. ANA-3] gi|117612549|gb|ABK48003.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. ANA-3] Length = 510 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL +APG Sbjct: 93 WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 152 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 153 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 212 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC GT+R+ D L + D++++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 213 VLIDAPCGGEGTVRKDADALKSWSLDEVIEISETQKALIESAFLALKPGGSLVYSTCTLN 272 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ L+ + A +PEG++ + P + + Sbjct: 273 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 323 Query: 430 MDGFFAVALRR-----LIQPK 445 GFF L + +QP+ Sbjct: 324 --GFFVAKLTKTRSVPRLQPE 342 >gi|325968037|ref|YP_004244229.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28] gi|323707240|gb|ADY00727.1| Fmu (Sun) domain protein [Vulcanisaeta moutnovskia 768-28] Length = 404 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 25/246 (10%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266 + L + G+++ Q A + ++D+ AAPGGKT+ ++ G Sbjct: 172 YNMPKVRDLREYELGLFYDQSLPAQWVTHILDPRPGDVIVDMNAAPGGKTSHIVQLGGGK 231 Query: 267 ---TALDVSKRRLEKLRCNLDRLHLYAEDIIE------MDAFDYCPKKLFDAVLVDAPCS 317 A D S+ ++ ++ NL RL + + +E +D + D +L+D PC+ Sbjct: 232 AVVYAFDRSENKIREIIENLSRLGMDSLYRVEVRDTRFLDIDEPDLINSVDKILIDPPCT 291 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G P + + + + +A +Q + + +KPGG++V+S C++ ++E+ + Sbjct: 292 DMGV---RPRLFDMKTMETVKSTAKYQEQFIKVAWKLLKPGGVLVYSTCTIPPLENEDNI 348 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + E++ ++ + + IR P + G+F Sbjct: 349 AYA---ENLGFEVIDISIPNTSGGLVDRYRNS--VIRFYPHV--------HDTPGYFIAK 395 Query: 438 LRRLIQ 443 LR+ Q Sbjct: 396 LRKPTQ 401 >gi|254367790|ref|ZP_04983811.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. holarctica 257] gi|134253601|gb|EBA52695.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. holarctica 257] Length = 267 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 68/279 (24%), Positives = 125/279 (44%), Gaps = 27/279 (9%) Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWV 225 + ++I L D + + + LK+ + + F +G + + Sbjct: 3 NAKADIFIRLNQNKDNKKVLDYFDKNNIGYSFTNLKDCIKLDQAIDVKYNHLFQQGYFTI 62 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNL 283 QD SA + NN +LD CAAPGGKT+ A +TA+D+ +RLE LR NL Sbjct: 63 QDISAQYADHIIKAANNDKILDACAAPGGKTSHILECAPQADITAIDIIDKRLELLRENL 122 Query: 284 DR-LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 +R + ++ + D F+ +++DAPCS+ GTIRR+PD+ R +DI Sbjct: 123 ERLSENHNVNVFKHDLTL-PLAGKFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKS 181 Query: 343 FQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q K+L + + G ++++ CS+ +++++ +++ L + N+A I Sbjct: 182 LQSKILANLWNNNLTDNGYLLYTTCSILAEENQQQIKEFLAKN---------NNAKIIEI 232 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ ++ P + DGF+ L++ Sbjct: 233 DILEKYKTSYGYQLLPSQQDG--------DGFYYCLLKK 263 >gi|322490359|emb|CBZ25619.1| putative methyltransferase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 849 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 100/270 (37%), Gaps = 54/270 (20%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTAL 269 Q+ ++IPV + +V+DLCAAPG KT V + A Sbjct: 284 SAVSFQEVVSAIPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVLIAN 343 Query: 270 DVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLVDA 314 + + + + L L R H D + ++ FD ++ D Sbjct: 344 EKDRVKATQTLPARLKRYHAPNVMTTRCDGVQWPRLYLDDPTNPSSEPQERQFDRIICDV 403 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS GTIR+ + T + QR LL +G+ + GGI+V+S CS++ ++ E Sbjct: 404 PCSGDGTIRKERSIATTWSPSYVKSLVPTQRALLYRGLDLLATGGILVYSTCSMNPKEDE 463 Query: 375 EVVQKVLRSSPIPVELVPLNS--------------------AYWKSIDMAMALSPEGWIR 414 EVV L + VEL+ +N+ + + +R Sbjct: 464 EVVCVGLETFGDSVELIDVNAVLQQRGCHLHSAGGILSPNVEGLQHPVLPPTYDGNKVLR 523 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 I P GFF A R++ QP Sbjct: 524 ILPH--------RDDTGGFFVAAFRKVKQP 545 >gi|119590102|gb|EAW69696.1| hCG39703, isoform CRA_e [Homo sapiens] Length = 428 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 109/271 (40%), Gaps = 23/271 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D+ K + + + + P + G +QD ++ +P L Sbjct: 132 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 191 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 192 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 251 Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354 P +L+D CS +G R T + A FQ++ L ++F Sbjct: 252 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 311 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ +V+S CSL ++++E+VV+ L+ +P L P A W ++ E + Sbjct: 312 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 367 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 R +P+ GFF + R+ P Sbjct: 368 RASPETTLSS--------GFFVAVIERVEVP 390 >gi|50552462|ref|XP_503641.1| YALI0E06765p [Yarrowia lipolytica] gi|49649510|emb|CAG79223.1| YALI0E06765p [Yarrowia lipolytica] Length = 752 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 139/400 (34%), Gaps = 70/400 (17%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 VV + K K + + + + + R+ G + + + + + + Sbjct: 26 WEDVVKENEKWEKYYKAQGIVPEAEWDAFKTACQSPLPVSFRVTGSTELTDEIQAAIVDD 85 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 Y + + ++ + W + ++ + + ++ Sbjct: 86 YVPHLSGLVFEGEEVVPPQNIKFYPNNHGWQFNVRKTVVRKQKLFSRFHRFLVLETTA-- 143 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------KVTALD 270 G Q+A + IP L + +VLD+CAAPG KTAQLI + V A D Sbjct: 144 -GNISRQEAVSMIPPILLDVQPSDAVLDMCAAPGSKTAQLIEAVHAGGDLNPSGFVIAND 202 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------------PKKLFDAVLVDAP 315 +R L + RL+ + DA Y FD +L D P Sbjct: 203 SDYKRSHMLIHQVQRLNSPNLIVTNHDAQMYPKVAIAAKGVDGAKSNEYLKFDRILCDVP 262 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS T+R++ +V + + Q +L++GI +KPGG +V+S CSL+ ++E Sbjct: 263 CSGDATMRKNVNVWPDWTPGNALGLHQLQLNILMRGIQLLKPGGRLVYSTCSLNPIENEA 322 Query: 376 VVQKVLRSSPIPVELVP-----------------------------------LNSAYWKS 400 VV + LR S V L+ +++ Sbjct: 323 VVAEALRLSKGSVHLIESRGDIPNLINSKGMTDWKVQAKGNKDGWNNKGDEGCTDSWFPP 382 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D ++ IR+ P + GFF VA + Sbjct: 383 TDESIKEQLTKCIRVYPH--------TQDTGGFFIVAFEK 414 >gi|295054316|ref|NP_663329.3| tRNA (cytosine-5-)-methyltransferase NSUN2 [Mus musculus] gi|148887181|sp|Q1HFZ0|NSUN2_MOUSE RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName: Full=Myc-induced SUN domain-containing protein; AltName: Full=NOL1/NOP2/Sun domain family member 2 Length = 757 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 441 >gi|213648131|ref|ZP_03378184.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 316 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 13/159 (8%) Query: 285 RLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 R + + D + FDA+L+DAPCS G +R+ PD L + + A Sbjct: 1 RCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAA 60 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QR+LL ++PGG +V+S C+L++Q++E V + + VE +PL + D Sbjct: 61 TQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---D 117 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 AL+PEG++ + P + + GFF LR++ Sbjct: 118 ADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 148 >gi|126314516|ref|XP_001379130.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 [Monodelphis domestica] Length = 456 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 90/444 (20%), Positives = 163/444 (36%), Gaps = 33/444 (7%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++ +LS + + SL L+ S F+ + + A+V T R+ +DAV+ Sbjct: 6 AAATVLSGLEAHQGSLKTLV----YGSRFQNV-----RQLYALVCETQRYSAVLDAVIRS 56 Query: 70 V-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L+ + + K L ++L V ++L V + + FA+L Sbjct: 57 AKLLEAEKKLKPHLAKVL---VYELLLGRGLRGGGRWKPVLSRHKARLQAEFARLKVKRC 113 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + +E A + +P + + + + S + Sbjct: 114 VSRNEDLLESSPGTAQVIQLPRFVRVNTLKTCLDDTIDYFKREGYSYQGCASGLDELRAL 173 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 + L + + + P + G +QD ++ +P L V+D Sbjct: 174 EGKRFFLDPLLPELL-VFPSGTDLHKHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDA 232 Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 CAAPG KT+ L + K+ A D+ RL + L R + +I D P Sbjct: 233 CAAPGNKTSHLAALLKNQGKIFAFDLDAGRLAAMATLLTRAGVSCCEIANEDFLSISPSN 292 Query: 306 L----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA--CFQRKLLLQGISFVKPGG 359 +L+D CS +G + R + A FQR+ L +SF Sbjct: 293 PRYSRVQYILLDPSCSGSGMVSRQLEEPGAVSPSQERLHALAGFQRRALRHALSFPALQ- 351 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S CS+ ++++E+VVQ +L+ P LV W ++ E IR +P+ Sbjct: 352 RLVYSTCSVCQEENEDVVQDILQQKLGPFRLVDALP-LWPQRGLSTFPGAEHCIRASPEA 410 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443 GFF L R+ + Sbjct: 411 TL--------TGGFFVAVLERVDE 426 >gi|54309113|ref|YP_130133.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Photobacterium profundum SS9] gi|46913545|emb|CAG20331.1| putative sun/nucleolar protein family protein [Photobacterium profundum SS9] Length = 484 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 21/245 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--DLCAAPGGKTA---QLIVSGAK 265 S+ + G++++Q+AS+ +PV N+ D+ +APG KT + + Sbjct: 92 SLGNTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGV 151 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIR 323 + A +++ R++ L NL R +Y + D + + FD +L+DAPCS G IR Sbjct: 152 LVANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTILLDAPCSGEGAIR 211 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + D + I A QR L++ +K GG++V+S C+L+ +++ V + + Sbjct: 212 KDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHFLKET 271 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440 VE PL + +L+ +G++ + P + + GFF +R+ Sbjct: 272 FGDAVEFEPLGDLFE---GAEKSLTEDGFLHVYPQIFDSE--------GFFVARIRKHAA 320 Query: 441 LIQPK 445 + PK Sbjct: 321 VETPK 325 >gi|326798006|ref|YP_004315825.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21] gi|326548770|gb|ADZ77155.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21] Length = 451 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 21/308 (6%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 + +P L+ + + + + W Sbjct: 1 MSNFLPSKLITALKKDFQIDEEEFRRVHRQQEQITSIRLNPT--KWTKAFENTDHIPWCP 58 Query: 204 RLKELPESIVSL--PGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAPGGKTA 257 L E + P F G ++VQ+AS+ + LDLCAAPGGK+ Sbjct: 59 TGYYLNERPIFTLDPLFHAGTYYVQEASSMFIDHIIRSLNIDKKASLALDLCAAPGGKST 118 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVD 313 L + + + ++ K R+ L NL + + + D FD +LVD Sbjct: 119 LLNSVLHPDSLLVSNEIIKTRVNVLADNLTKWGNFNVVVTNNDPQSFNRLPGFFDLMLVD 178 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS +G R+ + + + + Q+++L +S +K GI+++S CS +++ Sbjct: 179 APCSGSGMFRKDEQTISEWSEETVNLCSQRQQRILSDSLSTIKEDGILIYSTCSYSIEEN 238 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE+ ++ + + +P + A+ + G+ R P + GF Sbjct: 239 EEIADWLVANHDMQSIPIPHDLAWQIEETRSPKFQCHGY-RFYPHKVRGE--------GF 289 Query: 434 FAVALRRL 441 + R+ Sbjct: 290 YVACFRKK 297 >gi|74151867|dbj|BAE29720.1| unnamed protein product [Mus musculus] gi|74207211|dbj|BAE30795.1| unnamed protein product [Mus musculus] Length = 757 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPLPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDLDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 441 >gi|255721361|ref|XP_002545615.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240136104|gb|EER35657.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 714 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 44/263 (16%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV----------SGAKVTALDVS 272 Q+A + IP L + VLD+CAAPG KTAQLI V A D Sbjct: 155 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLIEALHADDEKKLPTGFVLANDSD 214 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + FD +L D PCS GT+R+ Sbjct: 215 YKRSHMLVHQVKRLNSPNFLVVNHDATLFPRIRLNNTQQDLKFDRILCDVPCSGDGTMRK 274 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E +V LR Sbjct: 275 NLNVWKDFRVGNALGLHSVQELILNRGLQLLKKGGRLVYSTCSLSPIENEAIVASALRKW 334 Query: 385 PIPVELVPLNSAYWKS--------------------------IDMAMALSPEGWIRITPD 418 + LV +++ A + E + + Sbjct: 335 GDQIRLVNVDNELPGLKRRQGVTDWKVYGKDMELREPGAEDVPATAFPPTKEEVEKFHLE 394 Query: 419 MLEKIDGVSSGMDGFFAVALRRL 441 ++ GFF ++ Sbjct: 395 NCVRVYPHLQNTGGFFITVFEKI 417 >gi|167378230|ref|XP_001734725.1| hypothetical protein [Entamoeba dispar SAW760] gi|165903651|gb|EDR29107.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 630 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 113/327 (34%), Gaps = 52/327 (15%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAE 220 E + + + + + + + A++LNA + E IV Sbjct: 80 EELKRLINNIDNKQERPVELSWYPGGIAYQLNASRGEIQKNKSLEELRRFIIVQTEA--- 136 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------VTALDVS 272 GV Q+A + IP VLDLCAAPG KT Q++ V A D Sbjct: 137 GVISRQEAVSMIPPLFLNVKPYHDVLDLCAAPGSKTTQILEMIHSGPEEATGIVIANDSD 196 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRHPD 327 +R E L RL I A +Y FD VL D PCS GT+R++PD Sbjct: 197 YKRCELLDHQTKRLQSPNIIITNHLAQNYPIKIGDQFMKFDRVLCDVPCSGDGTLRKNPD 256 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + Q ++ + + VK G V+S CSL+ + E VV +LR+ P Sbjct: 257 AWGKWNIMRGINLHKTQCTIMRRAVRLVKSCGRFVYSTCSLNPYEDEAVVAFILRNYP-Q 315 Query: 388 VELVPLNSAYW---------------------------------KSIDMAMALSPEGWIR 414 + LV +++ K + E R Sbjct: 316 IRLVDVSTELPTLKRCKGVSSWKVFNKEGEELTIKPDSKEDGSSKIPSTLFPPTEEEAKR 375 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 D + GFF L ++ Sbjct: 376 FRLDRCMRFLPQLQNTGGFFVAVLEKV 402 >gi|94494607|gb|ABF29536.1| Myc-induced SUN domain containing protein [Mus musculus] Length = 757 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 441 >gi|146325700|sp|A0KW34|RSMF_SHESA RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 482 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 23/261 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL +APG Sbjct: 65 WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 124 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC GT+R+ D L + D++++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 185 VLIDAPCGGEGTVRKDADALKSWSLDEVIEISETQKALIESAFLALKPGGSLVYSTCTLN 244 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ L+ + A +PEG++ + P + + Sbjct: 245 RHENQGVCEYLQQTYGDAVQFESLSQLF---DGAEKATTPEGFLHVWPQIYDSE------ 295 Query: 430 MDGFFAVALRR-----LIQPK 445 GFF L + +QP+ Sbjct: 296 --GFFVAKLTKTRSVPRLQPE 314 >gi|146325695|sp|Q6LQU5|RSMF_PHOPR RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 476 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 21/245 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--DLCAAPGGKTA---QLIVSGAK 265 S+ + G++++Q+AS+ +PV N+ D+ +APG KT + + Sbjct: 84 SLGNTAEHMAGLFYIQEASSMMPVTALLKNNDALDCVLDMASAPGSKTTQIACAMQNRGV 143 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIR 323 + A +++ R++ L NL R +Y + D + + FD +L+DAPCS G IR Sbjct: 144 LVANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTILLDAPCSGEGAIR 203 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + D + I A QR L++ +K GG++V+S C+L+ +++ V + + Sbjct: 204 KDGDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHFLKET 263 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440 VE PL + +L+ +G++ + P + + GFF +R+ Sbjct: 264 FGDAVEFEPLGDLFE---GAEKSLTEDGFLHVYPQIFDSE--------GFFVARIRKHAA 312 Query: 441 LIQPK 445 + PK Sbjct: 313 VETPK 317 >gi|167624296|ref|YP_001674590.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella halifaxensis HAW-EB4] gi|189045729|sp|B0TIZ6|RSMF_SHEHH RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|167354318|gb|ABZ76931.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella halifaxensis HAW-EB4] Length = 479 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 27/261 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN-----------NLSV 245 G + + +G++++Q+AS+ +P + V Sbjct: 65 WCNQGFWVTISSDLQLGNTIEHLQGLFYIQEASSMLPPTALFDSHADNENDLSQFAQTRV 124 Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD+ +APG KT Q+ + + + A + S R++ L N+ R+ + + DA + Sbjct: 125 LDMASAPGSKTTQIAALMNNQGLLVANEYSASRVKVLHANVARMGVSNCALTHFDARVFG 184 Query: 303 PK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD+VL+DAPCS GTIR+ PD L D +D Q+ L+ +K GG Sbjct: 185 EYLFETFDSVLLDAPCSGEGTIRKDPDALKNWDNNDNKGIVDTQKALIESAFLALKVGGC 244 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+L +Q++++V + + VE L + D A + EG++ + P + Sbjct: 245 LVYSTCALSRQENQDVCHHLKTAFGEAVEFAALTELFP---DADKACTEEGFLHVWPQIY 301 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + GFF +R++ Sbjct: 302 DSE--------GFFVAKIRKV 314 >gi|24379570|ref|NP_721525.1| methylase [Streptococcus mutans UA159] gi|24377516|gb|AAN58831.1|AE014951_2 conserved hypothetical protein; possible methylase [Streptococcus mutans UA159] Length = 436 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 117/298 (39%), Gaps = 25/298 (8%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P+ F E+ + G + + P++ T E + G Sbjct: 3 LPDKFVEKYQTILGSKAKTFLKSFDQEPIWAFRTNPLKKEQLLFEDAIPNTVWGHYGKVF 62 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264 + G+ + Q+ +A + VQ + VLDL AAPGGKT + + Sbjct: 63 GKSA-----EHVSGLVYSQEPAAQMVVQAAAPQKGMKVLDLAAAPGGKTTHLLSYLDNSG 117 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTI 322 + + D+SK+R + L N++R + + FD +++DAPCS G Sbjct: 118 ILVSNDISKKRSKILVENVERFGARNVVVTNESPQNLAKVFGNYFDLIVLDAPCSGEGMF 177 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ P + V+ A Q+K+L + + + GG +V+S C+ +++E V++ +L Sbjct: 178 RKDPAAIQYWHEAYPVECAELQKKILAEAMKMLAAGGNLVYSTCTWAPEENEAVIRWLLS 237 Query: 383 SSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + VP + + IDM R+ P + + F LR Sbjct: 238 QYDYLELVNVPKLNGMVQGIDMPQVA------RMYPHLFKGEGQ--------FIAKLR 281 >gi|325298387|ref|YP_004258304.1| Fmu (Sun) domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317940|gb|ADY35831.1| Fmu (Sun) domain protein [Bacteroides salanitronis DSM 18170] Length = 471 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 125/301 (41%), Gaps = 16/301 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F R G+ + A + + + + + G Sbjct: 1 MNLPVDFITRTGGLLGEGQFAAFRETLAKEPPVSIRMNRLKTDAVPAGGRQVPWCGSGYY 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI--- 260 + P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ Sbjct: 61 LASRPTFTFDPLFHAGCYYVQEASSMFLEQVLTQYVHEPVVMLDLCAAPGGKSTLARSVL 120 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 G+ + A +V + R++ L N+ + + ++ D D+ P +LFD +L D PCS Sbjct: 121 PEGSLLVANEVMRNRVQVLAENVTKWGHPSTVVLNNDPADFVPLGELFDVILTDVPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P + +++ QR+++ +KPGG++V+S C+ +++++E+ V Sbjct: 181 GMFRKDPVAVEEWSVENVTLCWQRQRRIVRDIWHCLKPGGLLVYSTCTYNREENEDNVAW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + V + S + S ++A P R P E G F V LR Sbjct: 241 IAEELGAEILPVEVQSGWNISGNLAGKDFP--VYRFLPHRTEGE--------GLFMVVLR 290 Query: 440 R 440 + Sbjct: 291 K 291 >gi|329667270|gb|AEB93218.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii DPC 6026] Length = 463 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 16/302 (5%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F E+ +N G+E A SP + + ++ P + Sbjct: 1 MSLPIEFVEKYKNLLGEEESSKFFTAINSPSKKGFRLNPLKNNYQDVQYSLKEPIEFTKD 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVS 262 E + G + QD SA P VLDLCAAPGGK+ + + Sbjct: 61 GYYGEISGRDSEWTGGYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASSLDN 120 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + ++SK R + LR NL+R + D FD +LVDAPCS G Sbjct: 121 SGLLVVNEISKSRAKDLRENLERWGATNVVVTNESPDRLSKKLPHFFDKILVDAPCSGEG 180 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P D ++ Q+++L + + +KPGG +V+S C+ ++ EE+V + Sbjct: 181 MFRKDPAATQYWSPDYVLTCQTRQKEILSEAMKMLKPGGEIVYSTCTYSPEEDEEIVAWL 240 Query: 381 LRSSPIPVELVPLNSAYWKS-IDMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + +E + L S + + + PE +R+ F Sbjct: 241 VENYLLEIEPLKLYSGMSAGRPEWSKSNLPELKETVRLWFQNGVGEGQ--------FVAH 292 Query: 438 LR 439 L+ Sbjct: 293 LK 294 >gi|149238756|ref|XP_001525254.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146450747|gb|EDK45003.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 724 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 102/271 (37%), Gaps = 60/271 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272 Q+A + IP L + VLD+CAAPG KTAQ + V A D Sbjct: 173 ISRQEAVSMIPPLLLDVKPHHYVLDMCAAPGSKTAQLVEALHAEDEKKLPTGFVLANDSD 232 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------PKKLFDAVLVDAPCSSTGTIRR 324 +R L + RL+ ++ DA + +D +L D PCS T+R+ Sbjct: 233 YKRSHMLVHQVKRLNSPNFLVVNHDAQLFPRVKLNGEAEYLKYDRILCDVPCSGDATMRK 292 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + +V + + Q +L +G+ +K GG +V+S CSL ++E VV + LR Sbjct: 293 NINVWKDFRVGNALGLHPLQFNILNRGLQLLKRGGRLVYSTCSLSPIENEAVVAEALRRW 352 Query: 385 PIPVELVPLNSA----------------------------------YWKSIDMAMALSPE 410 ++LV +++ + + + A + + Sbjct: 353 GKKIKLVNVDNESPGLKRRQGISDWKVFGKDMEIKNKGEDGLPDTLFPPTEEEAKDFNLQ 412 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R+ P + GFF +L Sbjct: 413 NCVRVYPHLQ--------NTGGFFITVFEKL 435 >gi|86160523|ref|YP_467308.1| tRNA and rRNA cytosine-C5-methylase [Anaeromyxobacter dehalogenans 2CP-C] gi|85777034|gb|ABC83871.1| tRNA and rRNA cytosine-C5-methylase [Anaeromyxobacter dehalogenans 2CP-C] Length = 429 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 21/233 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVT 267 ++ L + EG++ VQD + + + G +VLD CA GGKT L + +V Sbjct: 213 NVYGLGAWQEGLFEVQDEGSQLLGEAVGARAGEAVLDACAGAGGKTLLLAAAVGAAGRVH 272 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 A D RL +LR + + D LVDAPCS G +RR PD Sbjct: 273 AADPDAGRLVRLRTRALAAGAARIVAVHG--AAAPAELRVDRALVDAPCSELGALRRGPD 330 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + W D Q ++L + + V+PGG +V++ C+ + + E+V + + P Sbjct: 331 LRWRLDPAAFAALPALQARILERAAAHVRPGGRLVYATCTFRRAEDEDVAEAFEAAHPEF 390 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P A L+P+G++R P G D FFA A R Sbjct: 391 ARAAPDAP--------ASTLTPDGFLRTWPH--------RHGTDAFFAAAWVR 427 >gi|170726339|ref|YP_001760365.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella woodyi ATCC 51908] gi|254766869|sp|B1KQN1|RSMF_SHEWM RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|169811686|gb|ACA86270.1| RNA methylase, NOL1/NOP2/sun family [Shewanella woodyi ATCC 51908] Length = 478 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 61/255 (23%), Positives = 119/255 (46%), Gaps = 20/255 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT----LNNLSVLDLCAAP 252 G + + + +G++++Q+AS+ +P + ++LD+ +AP Sbjct: 65 WCSDGFWVALDNEIQLGNTIEHIQGLFYIQEASSMLPPTALFDGLDNSSEYTILDMASAP 124 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307 G KT Q+ + + + A + S R++ L N+ R+ +Y + DA + F Sbjct: 125 GSKTTQMASLMDNKGLLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYLYHQF 184 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DA+L+DAPCS GTIR+ P L ++ Q+ L+ +K GG +V+S C+ Sbjct: 185 DAILLDAPCSGEGTIRKDPLALRNWSLEENASIIETQKALIESAFLALKTGGSLVYSTCA 244 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L + +++EV + ++ P VE L+ + D + + EG++ + P + + Sbjct: 245 LSRSENQEVCEHLMSCFPQAVEFQSLSELFP---DADKSCTSEGFLHVWPQIYDSE---- 297 Query: 428 SGMDGFFAVALRRLI 442 GFF +R++ Sbjct: 298 ----GFFIAKVRKVA 308 >gi|15789727|ref|NP_279551.1| proliferating-cell nucleolar antigen [Halobacterium sp. NRC-1] gi|169235442|ref|YP_001688642.1| rRNA methylase [Halobacterium salinarum R1] gi|10580101|gb|AAG19031.1| proliferating-cell nucleolar antigen [Halobacterium sp. NRC-1] gi|167726508|emb|CAP13293.1| putative rRNA methylase [Halobacterium salinarum R1] Length = 303 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 110/272 (40%), Gaps = 13/272 (4%) Query: 177 YIDLTVKFDIETWAHKLNAV-MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + +T +E A + AV L+ + + G Q+ + +P + Sbjct: 33 PLAVTPDRAVEALAAEGVAVDRREWHPGVLEVDTNKPGNTWPYVHGWVHGQEEVSCVPPR 92 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + V D CAAPGGKTAQ I V A D + RL LR N DRL + + Sbjct: 93 VLDPEPGDVVWDACAAPGGKTAQIAAEIDDDGLVVANDDNLGRLSALRGNCDRLGVTSAA 152 Query: 293 IIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 + DA + DA LVDAPCS GTIR++ D L Q + Sbjct: 153 VTNTDARRATLDAFPDVAAVDAALVDAPCSCEGTIRKNADALDGAGASASRSLGRLQADI 212 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L + ++ +PGG VV+S C+ +++E VV +VL + + + A + Sbjct: 213 LARAVALTRPGGTVVYSTCTFAPEENEAVVDEVLGRTDSRLVEFDVGLASAPGLTEWGDA 272 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 S + + ++ + GFFA L Sbjct: 273 SYDDSL----ARAQRYYPHHNDTGGFFAAKLE 300 >gi|213627328|gb|AAI71126.1| NOL1/NOP2/Sun domain family, member 2 [Xenopus (Silurana) tropicalis] Length = 798 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 81/418 (19%), Positives = 136/418 (32%), Gaps = 69/418 (16%) Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148 + + Y ++ + Q + + + + LR I + + I Sbjct: 34 AAWECGYPEIIKENKLFEHYYQELKIVPDGEW-DKFMASLREPLPATIRITGYKSHAKEI 92 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 KE+ V D L+ + W L+ ++ K Sbjct: 93 LHCLKEKYFKELQDIEV----DGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 148 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 149 QFLVNETES---GNISRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEMLHADMN 205 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308 + V A DV +R L RL+ ++ DA +D Sbjct: 206 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREVLYYD 265 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CSL Sbjct: 266 RILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 325 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI---------- 413 + + E V+ +L S +EL + S + I ++ EG Sbjct: 326 NPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTS 385 Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 386 RHTQIRPTMFPPKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 443 >gi|148705068|gb|EDL37015.1| NOL1/NOP2/Sun domain family 2, isoform CRA_a [Mus musculus] Length = 782 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 103/284 (36%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 183 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 242 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 243 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 302 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 303 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 362 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 363 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 422 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 423 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQPK 466 >gi|67475318|ref|XP_653353.1| tRNA (cytosine-5-)-methyltransferase [Entamoeba histolytica HM-1:IMSS] gi|56470296|gb|EAL47967.1| tRNA (cytosine-5-)-methyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 630 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 113/327 (34%), Gaps = 52/327 (15%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAE 220 E + + + + + + + A++LNA + E IV Sbjct: 80 EELKRLINNIENEQERPIELSWYPGGIAYQLNASRGEIQKNKSLEELRKFIIVQTEA--- 136 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------VTALDVS 272 GV Q+A + IP VLDLCAAPG KT Q++ V A D Sbjct: 137 GVISRQEAVSMIPPLFLNVKPYHDVLDLCAAPGSKTTQILEMIHSGPEEATGIVIANDSD 196 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----PKKLFDAVLVDAPCSSTGTIRRHPD 327 +R E L RL I A +Y FD VL D PCS GT+R++PD Sbjct: 197 YKRCELLDHQTKRLQSPNIIITNHLAQNYPVKIGDQFMKFDRVLCDVPCSGDGTLRKNPD 256 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + Q ++ + + VK G V+S CSL+ + E VV +LR+ P Sbjct: 257 AWGKWNIMRGINLHKTQCTIMRRAVRLVKSCGRFVYSTCSLNPYEDEAVVAFILRNYP-Q 315 Query: 388 VELVPLNSAYW---------------------------------KSIDMAMALSPEGWIR 414 + LV +++ K + E R Sbjct: 316 IRLVDVSTELPTLKRCKGVSSWKVFNKEGEELTIKPDSKEDGSSKIPSTLFPPTEEEAKR 375 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 D + GFF L ++ Sbjct: 376 FRLDRCMRFLPQLQNTGGFFVAVLEKV 402 >gi|193785163|dbj|BAG54316.1| unnamed protein product [Homo sapiens] Length = 391 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 23/272 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D+ K + + + + P + G +QD ++ +P L Sbjct: 132 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 191 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 192 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 251 Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF- 354 P +L+D CS +G R T + A FQ++ L ++F Sbjct: 252 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 311 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ +V+S CSL ++++E+VV+ L+ +P L P A W ++ E + Sbjct: 312 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 367 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 R +P+ GFF + R P+ Sbjct: 368 RASPETTLSS--------GFFVAVIERAEVPR 391 >gi|332295840|ref|YP_004437763.1| Fmu (Sun) domain protein [Thermodesulfobium narugense DSM 14796] gi|332178943|gb|AEE14632.1| Fmu (Sun) domain protein [Thermodesulfobium narugense DSM 14796] Length = 420 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 72/453 (15%), Positives = 162/453 (35%), Gaps = 50/453 (11%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 +R + L ++ + L + L+ RD+ + +VN+ L+ ++ Sbjct: 4 TASRFYAFKTLKRIIYQGAYLHLVTRNI-------NLNGRDRAFFKLLVNLVLKSGYKLF 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 L + S L +++ ++ L Y V ++D + F Sbjct: 57 EKLSK------EKLSNSEVIALMMALVELKILGKEKYIVFSQYKSIPEKDFSEKRF---- 106 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + ++ I +P + ++ + + + + +S V Sbjct: 107 ----FKTLKKLENEKNLIENEISLPNFIINQIVDSKLD--INSFTKNFVSTPMTGFFVLS 160 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA----EGVWWVQDASASIPVQLFGTL 240 + LN++ R+ + S + + V S+ + V L Sbjct: 161 HSKEILDLLNSLSGKLYPGRIFKNYYYTESFAEVLGILPKDCYIVISESSMLSVLLLEPK 220 Query: 241 NNLSVLDLCAAPGGK----------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 +L++ A+PGGK + KV ++D+S+ R+ L+ ++ L Sbjct: 221 PGEKILEVGASPGGKSVFLEYVLKNYKDNLNKPKKVISVDISESRISALKKTCEKYKLKL 280 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + + D +L+DAPCS T+ PD+++ DI A Q +L Sbjct: 281 INPTLYTKKTVFD--VSDKILIDAPCSGLSTLDSKPDIIFHLKESDIKLLAKKQEDILNY 338 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 F++ G +V+S C+ + + + ++K L+ + + S+ + + D+ + + Sbjct: 339 YKDFIRVKGKLVYSVCTFTEMEGKGQIEKFLQKNKNFKTFEGVLSSKYINQDI---IIKD 395 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G + I + L FF L ++ + Sbjct: 396 GMLDIDWNALSLEP--------FFICCLEKVDE 420 >gi|146084114|ref|XP_001464926.1| methyltransferase [Leishmania infantum JPCM5] gi|134069021|emb|CAM67165.1| putative methyltransferase [Leishmania infantum JPCM5] Length = 847 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 79/373 (21%), Positives = 136/373 (36%), Gaps = 46/373 (12%) Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 ++++ + A N + V E +Q ++ P RL + I+ Sbjct: 179 LSEKNGSHPEIASAGNGSRKNVDSEWSAFVQSMST----PLPMTLRLHHSERALEA--IA 232 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 ++ I V+ + + + E + A Q+ Sbjct: 233 TRMLTTPDIAAVVRP-VAAFPSTSGLYSCSNSDYHSHKRVEYVCRT-LHAASAVSFQEVV 290 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSK-RRLE 277 ++IPV + +V+DLCAAPG KT V + A + + + + Sbjct: 291 SAIPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVLIANEKDRVKATQ 350 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLVDAPCSSTGTIR 323 L L R H D + + FD ++ D PCS GTIR Sbjct: 351 TLPARLKRYHAPNVMTTRCDGVQWPRLYLDDPTNSSSELQELRFDRIICDVPCSGDGTIR 410 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + + T + QR LL +G+ + GGI+V+S CS+D ++ EEVV L + Sbjct: 411 KERSIATTWSASYVKSLVPTQRALLCRGLDLLATGGILVYSTCSMDPKEDEEVVCVGLEA 470 Query: 384 SPIPVELVPLNSAY------WKSIDMAMALSPEGWIR-ITP-----DMLEKIDGVSSGMD 431 VEL+ +N+ S ++ + EG + P + + +I Sbjct: 471 FGDSVELIDVNAVLQQKGFHLHSAGGILSPNVEGMQHPVLPPTYDGNKVLRILPHRDDTG 530 Query: 432 GFFAVALRRLIQP 444 GFF A R++ QP Sbjct: 531 GFFVAAFRKVKQP 543 >gi|62857697|ref|NP_001015962.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Xenopus (Silurana) tropicalis] gi|123892686|sp|Q28E61|NSUN2_XENTR RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName: Full=NOL1/NOP2/Sun domain family member 2 gi|89271920|emb|CAJ83692.1| novel NOL1/NOP2/Sun domain family protein [Xenopus (Silurana) tropicalis] Length = 798 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 81/418 (19%), Positives = 136/418 (32%), Gaps = 69/418 (16%) Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148 + + Y ++ + Q + + + + LR I + + I Sbjct: 34 AAWECGYPEIIKENKLFEHYYQELKIVPDGEW-DKFMASLREPLPATIRITGYKSHAKEI 92 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 KE+ V D L+ + W L+ ++ K Sbjct: 93 LHCLKEKYFKELQDIEV----DGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 148 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 149 QFLVNETES---GNISRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEMLHADMN 205 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308 + V A DV +R L RL+ ++ DA +D Sbjct: 206 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREVLYYD 265 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CSL Sbjct: 266 RILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 325 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSA-----YWKSIDMAMALSPEGWI---------- 413 + + E V+ +L S +EL + S + I ++ EG Sbjct: 326 NPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKWEDIPTS 385 Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 386 RHTQIRPTMFPPKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 443 >gi|113970005|ref|YP_733798.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sp. MR-4] gi|113884689|gb|ABI38741.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sp. MR-4] Length = 509 Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 23/261 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL +APG Sbjct: 93 WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 152 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 153 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 212 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC G +R+ D L + D++++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 213 VLIDAPCGGEGIVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 272 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ LN + A +PEG++ + P + + Sbjct: 273 RHENQGVCEYLQQTYGDAVQFESLNQLF---DGAEKATTPEGFLHVWPQIYDSE------ 323 Query: 430 MDGFFAVALRR-----LIQPK 445 GFF L + +QP+ Sbjct: 324 --GFFVAKLTKTRSVPRLQPE 342 >gi|227432320|ref|ZP_03914313.1| tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351926|gb|EEJ42159.1| tRNA/rRNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 469 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 31/241 (12%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ SA ++ VLDL AAPGGK+ + + + ++ R + L Sbjct: 76 VYSQEPSAQFVGEVVRPNPCERVLDLAAAPGGKSTHLAAFMGQKGLLWSNEIFLNRAKIL 135 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R+ + + + K FD +L+DAPCS G R+ P + Sbjct: 136 SENIERMGIKNAIVSSHTPVELSSKLPSFFDKILLDAPCSGEGMFRKDPGAIAYWHEHYP 195 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI----------- 386 ++A QR++L + + ++PGG +V+S C+ ++ E+++ ++ + P Sbjct: 196 AENATRQREILTEAVKMLRPGGQIVYSTCTFAPEEDEQIINWLMAAYPEFSLVSIEKPDG 255 Query: 387 ----PVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALR 439 ++ A+ A + + R+ P LE G F L Sbjct: 256 ANLSDARHEWIDEAFVNGTTEHSATTKDVMKKAARLWPHKLEGE--------GHFVAKLV 307 Query: 440 R 440 + Sbjct: 308 K 308 >gi|90410339|ref|ZP_01218355.1| putative sun/nucleolar protein family protein [Photobacterium profundum 3TCK] gi|90328580|gb|EAS44864.1| putative sun/nucleolar protein family protein [Photobacterium profundum 3TCK] Length = 476 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 21/245 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL--DLCAAPGGKTA---QLIVSGAK 265 S+ + G++++Q+AS+ +PV N+ D+ AAPG KT + + Sbjct: 84 SLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMAAAPGSKTTQIACAMQNRGA 143 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIR 323 + A +++ R++ L NL R +Y + D + + FD +L+DAPCS G IR Sbjct: 144 LVANELAASRIKVLHANLQRCGVYNAALTHFDGCVFGGWAPESFDTILLDAPCSGEGAIR 203 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + D + I A QR L++ +K GG++V+S C+L+ +++ V + + Sbjct: 204 KDDDAMANWSLSSIEDIAAIQRNLIISAFQALKTGGMMVYSTCTLNLSENQHVCHFLKET 263 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440 VE PL + +L+ EG++ + P + + GFF +R+ Sbjct: 264 FGDAVEFEPLGDLFE---GAEKSLTEEGFLHVYPQIFDSE--------GFFVARIRKHAS 312 Query: 441 LIQPK 445 + PK Sbjct: 313 VETPK 317 >gi|323700254|ref|ZP_08112166.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132] gi|323460186|gb|EGB16051.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132] Length = 427 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 15/257 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 RL P + G+ ++QD S+ +P SVLD+C+A Sbjct: 30 DFEPEPFFVHARRLVREPFPLGESLAARFGLVYIQDRSSMLPPLTLAPPVGASVLDMCSA 89 Query: 252 PGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLF 307 PG KT ++L+ V A + S RL LR NL R + A D + Sbjct: 90 PGSKTGLLSRLVGPQGFVFASEPSADRLATLRANLRRTGSVNTATAKAMAQDLPFADGTW 149 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 + +D PCS GT+ ++P V+ Q+ LL + ++ ++PGG+V++S C+ Sbjct: 150 GHIQLDPPCSGWGTVDKNPKVMEVWSGSKTAPLVALQKTLLEKAVALLRPGGVVLYSTCT 209 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + +++E+ L + + ++L PL + +G +R+ Sbjct: 210 TNIEENEDQTAWALET--LDLDLAPLAEPAGFVFEPPHRPGLDGVLRV---------AED 258 Query: 428 SGMDGFFAVALRRLIQP 444 S GFF + P Sbjct: 259 SDGQGFFLARFTKRGAP 275 >gi|294673976|ref|YP_003574592.1| NOL1/NOP2/sun family protein [Prevotella ruminicola 23] gi|294473115|gb|ADE82504.1| NOL1/NOP2/sun family protein [Prevotella ruminicola 23] Length = 407 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 121/310 (39%), Gaps = 25/310 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE------TWAHKLNAVMLP 199 +P F G ER A + V I T H + V Sbjct: 1 MNLPADFVAETRRIMGDERYNRFVGAFDEEAPTSIRVNPRIAIDHGPLTMDHSDSQVPWC 60 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-----LSVLDLCAAPGG 254 + G L + P+ P G ++VQ+AS+ + + LDLCAAPGG Sbjct: 61 SEGYYLNDRPQFTFD-PLLHAGCYYVQEASSMFVTHILRNVQCSMVNVQCALDLCAAPGG 119 Query: 255 KTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAV 310 K+ L + + + R + L N+ + + D+ K FD + Sbjct: 120 KSTALRSVLPDDCVLISNEPMGNRAQILLENVTKWGGPNHIVTNNYPRDFRKAKLKFDLI 179 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS G R+ P+ + ++ K QR+++ + PGG++++S C+ + Sbjct: 180 LCDVPCSGEGMFRKDPNAISEWSAQNVEKCWQLQREIVADAWECLNPGGLLIYSTCTYNT 239 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 +++EE ++ +L + V +P++ ++ + + + E R P + Sbjct: 240 KENEENIRWILDTYDAQVLDIPVDPSWNITGSLLQGFN-EPVYRFIPGITRGE------- 291 Query: 431 DGFFAVALRR 440 G F ALR+ Sbjct: 292 -GLFVCALRK 300 >gi|146325701|sp|Q0HJM6|RSMF_SHESM RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 481 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 23/261 (8%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL +APG Sbjct: 65 WCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAPGS 124 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC G +R+ D L + D++++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 185 VLIDAPCGGEGIVRKDADALKSWSLDEVLEISETQKALIESAFLALKPGGSLVYSTCTLN 244 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ LN + A +PEG++ + P + + Sbjct: 245 RHENQGVCEYLQQTYGDAVQFESLNQLF---DGAEKATTPEGFLHVWPQIYDSE------ 295 Query: 430 MDGFFAVALRR-----LIQPK 445 GFF L + +QP+ Sbjct: 296 --GFFVAKLTKTRSVPRLQPE 314 >gi|307110087|gb|EFN58324.1| hypothetical protein CHLNCDRAFT_30164 [Chlorella variabilis] Length = 399 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 32/245 (13%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + E + + P + G + +Q AS+ +P V+D+ AAPGGKT L + Sbjct: 65 VYESQVPVGATPEYMAGHYMLQGASSFLPCMALAPQEGEQVVDVAAAPGGKTTYLAALMR 124 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSS 318 + + A +++K RL L NL R+ + + D ++ D VL+DAPCS Sbjct: 125 NTGVLFANEINKERLTSLTANLQRMGVTNTIVCNYDGRQLPRVLGERSVDRVLLDAPCSG 184 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 TG I + P V L G G +VV+S CS+ +++E VV Sbjct: 185 TGVISKDPTVKV------------GGSLGLPSGA-----GVVVVYSTCSMMVEENENVVN 227 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM--LEKIDGVSSGMDGFFAV 436 L+ + V L I R P + + + +DGFF Sbjct: 228 YALKRRDVKVVPCGLEFGRPGFIRFR-------DFRFHPSLAEARRFYPHAHNLDGFFVC 280 Query: 437 ALRRL 441 L+++ Sbjct: 281 KLKKM 285 >gi|324510580|gb|ADY44425.1| Ribosomal RNA methyltransferase [Ascaris suum] Length = 583 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 16/237 (6%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 A G+ + + + + P + G + +Q S+ +PV N VLD+CAAPGG Sbjct: 354 AAKWTKVGLVVYDSQFPVGATPEYLAGHYMIQGLSSFLPVMALAPQPNELVLDMCAAPGG 413 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDA 309 KT+ + + + V A D + R + NL R+ + + +D + FD Sbjct: 414 KTSHIAALMKNTGVVFANDSNMVRCRAIIGNLHRMGVNNAVVSNLDGKVFAKTMAQGFDR 473 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSN 365 VL+DAPCS TG I + V +RD+ D+ + QR+L+L I + GG +V+S Sbjct: 474 VLLDAPCSGTGVIWKDDSVKTSRDSQDVQRRHTVQRQLILAAIDAINAKSSTGGYLVYST 533 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 CS+ +++E VV VLR + L + R P + Sbjct: 534 CSVLVEENEAVVDYVLRKRDCKLVPTGLEIGV-------EGFTKFREYRFHPSLNLT 583 >gi|294938748|ref|XP_002782179.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239893677|gb|EER13974.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 655 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 72/443 (16%), Positives = 135/443 (30%), Gaps = 90/443 (20%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 V + + L + ++ D+ + + R+ ID + Sbjct: 288 DKVKQHHTPVDMFLHRYFQAHR--AINADDRAWISDHMYELFRWQGLIDH----CTPKPV 341 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 + R+ R Sbjct: 342 STRG-------RLYTY----------------------------------LTSDRWRSNA 360 Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET------- 188 + +P+ RL + G ++ + +S L V + + Sbjct: 361 QNRRLDPHIRTSMPKELFGRLADSLGTDKAVEVSSVLNERPVTFLRVNINQSSRSDMMKF 420 Query: 189 -WAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + +++ T + L + ++ LP + G +QD S+ I VL Sbjct: 421 LLSKEISVEKTATSPVGLVINDKKLLLDLPEYRSGAVEIQDESSQIMALQVKADPGSVVL 480 Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D CA GGK + + + DV L R L R + ++ Sbjct: 481 DYCAGSGGKSLVFGPNMQNTGHLYLHDVRDSMLRDARKRLRRAGIRNYTLLYPRHPTLHK 540 Query: 304 K--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGI 360 D VL D PCS TG +RR+PD W + + QR+++ + ++KP GG Sbjct: 541 MLLGKCDWVLCDVPCSRTGVLRRNPDAKWMYSDEKLFHFVALQREIVRNSLRYLKPKGGK 600 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ S+ +++ +Q + R + + P+++ Sbjct: 601 LVYCTNSILDEENILQIQHLCRFHELVLSEEPMHA------------------------- 635 Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443 S GMDGFF+ L R Sbjct: 636 ---MPQSKGMDGFFSATLERKST 655 >gi|328723670|ref|XP_001950139.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase CG6133-like [Acyrthosiphon pisum] Length = 689 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 107/302 (35%), Gaps = 61/302 (20%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +LK + I + Q+ + IP L + VLD+CAA Sbjct: 128 WQLKITRKDIRGSEAYYRLHNFLISETGNGNISRQETVSMIPPLLLDIQPSDKVLDMCAA 187 Query: 252 PGGKTAQLIV----------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD---- 297 PG KTAQLI + A DV R L RL+ I D Sbjct: 188 PGSKTAQLIEALYSGSTSSVPDGLIMANDVHNARCYMLVHQAKRLNSANVVITNHDATVL 247 Query: 298 -----AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + FD +L DAPCS GT+R++ D+ + Q ++L +G+ Sbjct: 248 PVMNLDENGDSMLKFDKILCDAPCSGDGTLRKNADIWTKWSPGNANNLHGIQFRILKRGL 307 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK------------- 399 + GG +V+S CS + ++E VVQ+++ + V ++ + Sbjct: 308 ELLNVGGRLVYSTCSFNPVENEAVVQRMMTEAQGSVVIINAHDKLPGLKIVNGLSKWIVV 367 Query: 400 ----SIDMAMALSPEGW-IRITPDMLE------------KIDGVSSGMDGFFAVALRRLI 442 + PE W +I P M +I GFF + ++ Sbjct: 368 SKDLDVYKTFEEVPEKWNTQIRPQMFPPKEDLYNLDKCIRILPHHQDTGGFFVTLMEKI- 426 Query: 443 QP 444 +P Sbjct: 427 KP 428 >gi|257096818|sp|A6WP46|RSMF_SHEB8 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 486 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 74 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDLASAPGSKTTQ 133 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 194 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 302 Query: 434 FAVALRRLI-----QPK 445 F L + QP+ Sbjct: 303 FVAKLTKTASVPRLQPE 319 >gi|153000967|ref|YP_001366648.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica OS185] gi|151365585|gb|ABS08585.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS185] Length = 505 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 93 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQYVLDLASAPGSKTTQ 152 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321 Query: 434 FAVALRRLI-----QPK 445 F L + QP+ Sbjct: 322 FVAKLTKTASVPRLQPE 338 >gi|217973073|ref|YP_002357824.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica OS223] gi|217498208|gb|ACK46401.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS223] Length = 505 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 93 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 152 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 213 APCGGEGTVRKDVDALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321 Query: 434 FAVALRRLI-----QPK 445 F L + QP+ Sbjct: 322 FVAKLTKTASVPRLQPE 338 >gi|257096816|sp|B8E968|RSMF_SHEB2 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 486 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 21/257 (8%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 74 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 133 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 194 APCGGEGTVRKDVDALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 302 Query: 434 FAVALRRLI-----QPK 445 F L + QP+ Sbjct: 303 FVAKLTKTASVPRLQPE 319 >gi|15618584|ref|NP_224870.1| RNA methyltransferase [Chlamydophila pneumoniae CWL029] gi|15836206|ref|NP_300730.1| RNA methyltransferase [Chlamydophila pneumoniae J138] gi|16752367|ref|NP_444625.1| Nol1/Nop2/Sun family protein [Chlamydophila pneumoniae AR39] gi|33242032|ref|NP_876973.1| fmu methyltransferase [Chlamydophila pneumoniae TW-183] gi|4376975|gb|AAD18813.1| RNA Methyltransferase [Chlamydophila pneumoniae CWL029] gi|8163359|gb|AAF73625.1| Nol1/Nop2/Sun family protein [Chlamydophila pneumoniae AR39] gi|8979046|dbj|BAA98881.1| RNA methyltransferase [Chlamydophila pneumoniae J138] gi|33236542|gb|AAP98630.1| fmu methyltransferase [Chlamydophila pneumoniae TW-183] Length = 364 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 78/436 (17%), Positives = 137/436 (31%), Gaps = 85/436 (19%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + LL + IS + + + L +D+ ++ I+ LR ++ ++ Sbjct: 9 AYQLLKQLHTSAISEADRVSYYFKQNR--SLGSKDRQWIQNIIFNILRHRRLLETLI--- 63 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L S +L V+ V Sbjct: 64 LDSGEQVTPEALVA------------------KVNEGV---------------------- 83 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + I + L YG+E+ I+ ++ I + V D + Sbjct: 84 LENLDSYSAIPWPVRYSISDDLAHFLVQDYGEEQAEEIAKIWLTEAPITIRVNTDKISVK 143 Query: 191 HKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + P+ L E + S F G + +QD ++ Q + V Sbjct: 144 ELQEKLEYPSSPGELPEALHFSKRHPLQSTEAFRRGFFEIQDENSQRISQGISLTDKDIV 203 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LD CA GGK+ V D K L+ + L R + D Sbjct: 204 LDFCAGAGGKSLIFAQKAKHVVINDSRKAILQTAKHRLLRAGARNFSL--ADQLRLGSFS 261 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 + V+VDAPCS TG RRHP+ W ++ Q+ +L Q ++V P G +V+ Sbjct: 262 V---VIVDAPCSGTGVFRRHPEHKWQFSKKLLLNYVRVQKSILKQASAYVGPRGRLVYIT 318 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL K+++E V + + + V + + Sbjct: 319 CSLLKEENEAHVAYM---HSLGWKEV---------------------------HRKTLPL 348 Query: 426 VSSGMDGFFAVALRRL 441 D FF +++ Sbjct: 349 QVGKGDAFFTSHFQKI 364 >gi|253573330|ref|ZP_04850673.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846858|gb|EES74863.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 319 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 102/248 (41%), Gaps = 33/248 (13%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 G E P A G++++Q+ SA V+L +VLDL AAPGGKT Sbjct: 71 PWCGTGYYYEESTRPGKHPYHAAGLYYIQEPSAMSAVELLDPQPGQTVLDLAAAPGGKTT 130 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLV 312 Q + + + ++ +R L N++RL + + + + FD +++ Sbjct: 131 QIAAKMAGQGLLISNEIHPQRARILAENVERLGIRNAVVTQAAPPALSARFPLAFDRIML 190 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS G R+ PD + + + A Q +L ++ +KPGG + +S C+ ++ + Sbjct: 191 DAPCSGEGMFRKDPDAISEWSPEAVELCAARQWDILQDAVAMLKPGGRLAYSTCTFNRHE 250 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +E+ + ++L P + L+ RI P + G Sbjct: 251 NEDTIARLLAEYP-FLRLIAEK-------------------RIWPHREQGE--------G 282 Query: 433 FFAVALRR 440 + + R Sbjct: 283 HYVALIER 290 >gi|332885656|gb|EGK05902.1| hypothetical protein HMPREF9456_02166 [Dysgonomonas mossii DSM 22836] Length = 455 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 118/302 (39%), Gaps = 21/302 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F R ++ G + V + E L+ V+ G L Sbjct: 1 MNLPVDFITRTKSLLGDDWVAFVEALNSESPTSIRINNHKAEKLF--LDKVLWTESGYYL 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIP---VQLFGTLNNLSVLDLCAAPGGK---TAQL 259 + P P F G ++VQ+AS+ + + N+ +LDLCAAPGGK A + Sbjct: 59 PQRPSFTFD-PLFHAGCYYVQEASSMFIEQAFRQYVVGGNVRILDLCAAPGGKSTLIADV 117 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 + + + + +V + R L N+ + + D + FD +LVDAPCS Sbjct: 118 MGESSLLVSNEVIRTRANILAENITKWGNPNTVVTNNDPQQIGKLQGFFDFILVDAPCSG 177 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ D++ Q+++L S +K G++++S C+ + ++EE VQ Sbjct: 178 EGMFRKDEGATSEWSIDNVKLCKERQQRILADIWSALKTEGLLLYSTCTYNVDENEENVQ 237 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + V + + + S + + R P + GFF L Sbjct: 238 WICEELGAEVLPIDVKEGWGVSPSLRDSFPA---YRFFPHKTKGE--------GFFCALL 286 Query: 439 RR 440 R+ Sbjct: 287 RK 288 >gi|307244060|ref|ZP_07526179.1| NOL1/NOP2/sun family protein [Peptostreptococcus stomatis DSM 17678] gi|306492584|gb|EFM64618.1| NOL1/NOP2/sun family protein [Peptostreptococcus stomatis DSM 17678] Length = 497 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 108/301 (35%), Gaps = 47/301 (15%) Query: 151 WFKERLENFYGKERVLAISDACISPLYIDL------TVKFDIETWAHKLNAVMLPTGGIR 204 + + Y E+ AI + + FD + + Sbjct: 46 DEYQDFLDSYQDEKTSAIRVNNLKMPIERFKDLGLFNIDFDRDNISWAKEG--------Y 97 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + P G +++Q+ SA V VLDLCAAPGGK+ + Sbjct: 98 YISGDVNPGKNPLHDAGAYYIQEPSAMSVVGQTPINEGDRVLDLCAAPGGKSTYILSKLN 157 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSST 319 + + +++ R+ L NL+R I D+ K FD + +DAPCS Sbjct: 158 HRGLLVSNEINPNRIRALGENLERFGAVNSIITNSDSSSLLTFFKGFFDKIFIDAPCSGQ 217 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ + D + + A QR+++ ++ GG++++S C+ +Q++E++++ Sbjct: 218 GMFRKDAFAIEDWSQDKVDECAGIQRQIIRDAYEMLRNGGMLIYSTCTFTRQENEDIIEA 277 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L P LV ++ RI P G F + Sbjct: 278 FLGDYPT-ASLVDMD-------------------RIWPHKDRGE--------GHFCARIL 309 Query: 440 R 440 + Sbjct: 310 K 310 >gi|298530694|ref|ZP_07018096.1| tRNA (cytosine-5-)-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298510068|gb|EFI33972.1| tRNA (cytosine-5-)-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 422 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 12/251 (4%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 V G + P + + G ++QD S+ +P L +VLD+CAAPGGK Sbjct: 39 VPEVPGAWVEENGPFGLGASLAGYFGFLYIQDLSSMLPPILLAPGPGQAVLDMCAAPGGK 98 Query: 256 TAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 + QL G V A + S+ RL LR NL+RL+ + +FD +LV Sbjct: 99 SVQLAEMTGEGGLVIANEPSRDRLGTLRANLERLNAANVVTTNYAGQAFPQGPVFDCILV 158 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 DAPCS GT+ ++P V +++ QRKLL + + PGG +V+S C+ ++++ Sbjct: 159 DAPCSGWGTVGKNPAVTRVWKKENLHTLIEVQRKLLEKAYKMLAPGGRLVYSTCTTNEEE 218 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 ++ V +L+ + + ++ M L G P ML + G SG Sbjct: 219 NQNQVHWILKRTSLA--------GSPRAQHMQSELGLPGLESTAPGMLV-MKGDESGSQS 269 Query: 433 FFAVALRRLIQ 443 FF AL + + Sbjct: 270 FFMAALEKPGK 280 >gi|301776092|ref|XP_002923467.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like, partial [Ailuropoda melanoleuca] Length = 762 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 146 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 205 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 206 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLKIDVNGRKEILFYDRILCDVPCSGDGTM 265 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 266 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 325 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S I ++ +G +I P M Sbjct: 326 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFTEWEGVPHSRHTQIRPTMFPPKD 385 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 ++ GFF L + Sbjct: 386 PEKLQAMHLERCLRVLPHHQNTGGFFVAVLVKK 418 >gi|162605886|ref|XP_001713458.1| nucleolar protein [Guillardia theta] gi|13794390|gb|AAK39767.1|AF083031_124 nucleolar protein [Guillardia theta] Length = 358 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267 S+ S + G + +Q S+ +PV N +LDL AAPG K +Q + + + Sbjct: 122 SLGSTTEYLCGYYTLQSISSLLPVISLDPTTNEKILDLAAAPGNKSTLISQFMRNNGILI 181 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-FDAVLVDAPCSSTGTIRRHP 326 + D+ K R++ L ++ RL++ I D F VL+DAPCS +G + P Sbjct: 182 SNDIKKLRIKSLVNSIHRLNVDNSIIANYDGILIPFIMKGFHRVLLDAPCSGSGLVSHDP 241 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVK---PGG-IVVFSNCSLDKQDSEEVVQKVLR 382 + + ++ ++ Q++LL+ I P G I+V+S CS+ +++E V+Q VL Sbjct: 242 LIK-KINKHIVILNSNLQKRLLIAAIDACNGISPMGNIIVYSTCSISVEENECVIQYVLS 300 Query: 383 SSPIPVELVPLNSAYWKSI---DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + ++ ++ S + R P + +DGFF LR Sbjct: 301 KRNVEIISTGIDFGLPGLTTYKNIRFDESMKKCKRFYPHV--------HNVDGFFICKLR 352 Query: 440 RL 441 + Sbjct: 353 KK 354 >gi|300706745|ref|XP_002995614.1| hypothetical protein NCER_101435 [Nosema ceranae BRL01] gi|239604788|gb|EEQ81943.1| hypothetical protein NCER_101435 [Nosema ceranae BRL01] Length = 474 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 75/307 (24%), Positives = 132/307 (42%), Gaps = 17/307 (5%) Query: 152 FKERLENFYGKERVLAISDACISPLY-IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210 F + L NF E I+ + +T L + +++ + Sbjct: 13 FYKPLLNFTNDEWTRFINTMESRLPSALRITNTKFKNKIEIFFLKEKLISKNKFFRDVYD 72 Query: 211 SIVSLPGFAEG--------VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262 ++ + Q+ + +PV L G N SVLD+CAAPG KT QL+ Sbjct: 73 TVHKGTSHKDFIINQTSVGHIQKQEIVSMLPVLLMGLKENHSVLDMCAAPGSKTKQLLEK 132 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGT 321 + V A D S +RL L ++ + +++ DA K FD VL D PCS GT Sbjct: 133 ASLVVANDCSSKRLNILISETCKIPHASYLVVKHDASALPVFKTDFDRVLCDVPCSGDGT 192 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++P +L + + Q ++L I+FVK G++++S CSL+ ++E+VV K + Sbjct: 193 ARKNPQILNNWNIGSAANLSNLQYRILKHAINFVKSDGLIIYSTCSLNPIENEQVVLKAI 252 Query: 382 RSSPIPV----ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE---KIDGVSSGMDGFF 434 + + + + N + + + + E +R + L+ +I + GFF Sbjct: 253 MQDDLEIVDLRKFIDHNISKDFVMRDGIIIKDENGLRTNFEDLKKCIRIYPHDNDTGGFF 312 Query: 435 AVALRRL 441 V L++ Sbjct: 313 IVGLKKK 319 >gi|74003045|ref|XP_856448.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein isoform 3 [Canis familiaris] Length = 775 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 160 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 219 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 220 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVNGRKEILFYDRILCDVPCSGDGTM 279 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 280 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 339 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S I ++ +G +I P M Sbjct: 340 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFAEWEDVPHSRHTQIRPTMFPPKD 399 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 +I GFF L + Sbjct: 400 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 432 >gi|193582508|ref|XP_001950228.1| PREDICTED: putative methyltransferase NSUN6-like [Acyrthosiphon pisum] Length = 447 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 29/255 (11%) Query: 210 ESIVSLPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 + +P F E S L NNL VLD+CAAPG KT + + + Sbjct: 201 DPATGIPSFTLPNEYGMLQNLPSVVTGHALDVNENNLKVLDMCAAPGNKTTHIAILMNNK 260 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-------------AFDYCPKKLFDAV 310 + A+D SK +L K+ + I D + FD V Sbjct: 261 GSIDAVDKSKTKLNKVELRCKHFGIQNVKIHHFDSLVSVDLNNINNSDRPPFKNESFDRV 320 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS+ G + P + D + + + QRKLL+ I+ VKPGGI+V+S C++ Sbjct: 321 LLDAPCSNLG---QRPLLKIEVDKNVLKRFPALQRKLLINAINLVKPGGILVYSTCTITL 377 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 +++E V VL P + + I L+ + + + + ++ Sbjct: 378 EENEHNVAWVLEKFPQMELIAINSEIGSPGIATQDGLNKDLC-----EFVRRFGPENAEE 432 Query: 431 D--GFFAVALRRLIQ 443 D GFF ++ +Q Sbjct: 433 DSIGFFISKFQKRVQ 447 >gi|74003041|ref|XP_535800.2| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein isoform 1 [Canis familiaris] Length = 780 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 62/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 160 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 219 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 220 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVNGRKEILFYDRILCDVPCSGDGTM 279 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 280 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 339 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S I ++ +G +I P M Sbjct: 340 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFAEWEDVPHSRHTQIRPTMFPPKD 399 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 +I GFF L + Sbjct: 400 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 432 >gi|269302458|gb|ACZ32558.1| NOL1/NOP2/Sun family protein [Chlamydophila pneumoniae LPCoLN] Length = 364 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 78/436 (17%), Positives = 137/436 (31%), Gaps = 85/436 (19%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + LL + IS + + + L +D+ ++ I+ LR ++ ++ Sbjct: 9 AYQLLKQLHTSAISEADRVSYYFKQNR--SLGSKDRQWIQNIIFNILRHRRLLETLI--- 63 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L S +L V+ V Sbjct: 64 LDSGEQVTPEALVA------------------KVNEGV---------------------- 83 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + I + L YG+E+ I+ ++ I + V D + Sbjct: 84 LENLDSYSAIPWPVRYSISDDLAHFLVQDYGEEQAEEIAKIWLTEAPITIRVNTDKISVK 143 Query: 191 HKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + P+ L E + S F G + +QD ++ Q + V Sbjct: 144 ELQEKLEYPSCPGELPEALHFSKRHPLQSTEAFRRGFFEIQDENSQRISQGISLTDKDIV 203 Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 LD CA GGK+ V D K L+ + L R + D Sbjct: 204 LDFCAGAGGKSLIFAQKAKHVVINDSRKAILQTAKHRLLRAGARNFSL--ADQLRLGSFS 261 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 + V+VDAPCS TG RRHP+ W ++ Q+ +L Q ++V P G +V+ Sbjct: 262 V---VIVDAPCSGTGVFRRHPEHKWQFSKKLLLNYVRVQKSILKQASAYVGPRGRLVYIT 318 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CSL K+++E V + + + V + + Sbjct: 319 CSLLKEENEAHVAYM---HSLGWKEV---------------------------HRKTLPL 348 Query: 426 VSSGMDGFFAVALRRL 441 D FF +++ Sbjct: 349 QVGKGDAFFTSHFQKI 364 >gi|198434760|ref|XP_002132117.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 2 [Ciona intestinalis] Length = 702 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 130/389 (33%), Gaps = 84/389 (21%) Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP------------ 175 ++ A +P F+ + K+ + + Sbjct: 36 EQKCFDISQFEEFLNAMKQPLPAVFRITGYKRHAKQLLKNMKRNHFEDLTELKIGDDTVK 95 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + L+ D W LN + I G Q+A + IP Sbjct: 96 PPVPLSWYPDDLAWQTDLNRGQIRKVPQLQNFHTFLIAESES---GHITRQEAVSMIPPL 152 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK----------VTALDVSKRRLEKLRCNLDR 285 L ++ VLD+CAAPG KTAQ++ + A D +R L + R Sbjct: 153 LLDVHSHHKVLDMCAAPGSKTAQIVELLHRDENNSIPEGICVANDKDNKRCYMLVHQIGR 212 Query: 286 LHLYAEDIIEMDAFDYCPKK-----------LFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 LH + I+ DA ++ +D +L D PCS GT+R++ DV + Sbjct: 213 LHSPSTLIVNHDASNFPEIFIKNDDGKDILLRYDRILCDVPCSGDGTMRKNTDVWVKWNQ 272 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + + Q ++LL+G+ + GG +V+S CSL+ + E VV + VELV ++ Sbjct: 273 ANAIYLHRTQYRILLRGLELLASGGQLVYSTCSLNPIEDEAVVAAAIHHCGGAVELVSVS 332 Query: 395 SA---------------------------------------YWKSIDMAMALSPEGWIRI 415 D+ A+ E +R+ Sbjct: 333 LPGLKWSPGVSSWRVMDSDMNWYDTHDQVPEKKKNISYSMFPPGGQDVMEAMHLERCMRL 392 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P + GFF LR+ +P Sbjct: 393 LPHQQD--------TGGFFVAVLRKK-KP 412 >gi|319947271|ref|ZP_08021504.1| NOL1/NOP2/sun family protein [Streptococcus australis ATCC 700641] gi|319746513|gb|EFV98773.1| NOL1/NOP2/sun family protein [Streptococcus australis ATCC 700641] Length = 434 Score = 120 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 20/254 (7%) Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 A ++ G S G+ + Q+ +A + Q+ + VLDL Sbjct: 41 AEQIRGDEPIPGMPWSYYGKVS-GKSIAHVTGLVYSQEPAAQMVAQVAHPKPGMKVLDLA 99 Query: 250 AAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPK 304 AAPGGKT + + + + ++ K R + L N++R + D Sbjct: 100 AAPGGKTTHLLSYLDNQGLLVSNEIHKGRSKILVENVERFGARNVVVTNESADRLAKVFP 159 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FD +++DAPCS G R+ PD + D + A QR++L I + PGG +V+S Sbjct: 160 AYFDLIVLDAPCSGEGMFRKQPDAMDYWHPDYPAQCAGLQREILTDAIKMLAPGGQLVYS 219 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 C+ +++EE+V + E K M + R+ P + Sbjct: 220 TCTWAPEENEEIVSW------LLEEYELELLPIEKINGMVEGIGYPETARMYPHRFKGEG 273 Query: 425 GVSSGMDGFFAVAL 438 F Sbjct: 274 Q--------FVAKF 279 >gi|254442805|ref|ZP_05056281.1| NOL1/NOP2/sun family, putative [Verrucomicrobiae bacterium DG1235] gi|198257113|gb|EDY81421.1| NOL1/NOP2/sun family, putative [Verrucomicrobiae bacterium DG1235] Length = 335 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 11/249 (4%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 A P+W R G E A S + + + + L Sbjct: 56 AWRYSHPQWLVSRWLEQMGLEATRAFLRWNQSEAGVFARWQGEPDVLPEL---TPLEERP 112 Query: 203 IRLKELPESIVSLPGFAE--GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + + + E ++ A++ P L ++ LDLCAAPGGK+ + Sbjct: 113 GFFSLESGAWEKISSYIEAGRLYVQNPAASIAPRLLVESVRVGRFLDLCAAPGGKSLLME 172 Query: 261 VSG----AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314 ++ ++D++ R +K+ N +R + D F+ + FD VL+DA Sbjct: 173 KLAGAGVDEIVSVDLAGPRYQKMVGNFERYEAKRIKPLAADVFELSAESRGLFDGVLLDA 232 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS++G ++ D W + + + Q KLL VKPGG +V+S CS+D +++ Sbjct: 233 PCSNSGVLQHKIDARWRQTPESLRSIVSLQGKLLAAASKLVKPGGSLVYSTCSIDDEENA 292 Query: 375 EVVQKVLRS 383 VV L+S Sbjct: 293 GVVDAFLQS 301 >gi|328787657|ref|XP_395050.3| PREDICTED: tRNA (cytosine-5-)-methyltransferase CG6133-like [Apis mellifera] Length = 740 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 131/410 (31%), Gaps = 74/410 (18%) Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 Y D+ + ++ + +N++ + + ++ +++ + Sbjct: 35 YADIIRENKDFENYYKTQKIVPEEQWDSFINTMRKNLPVAFRITGSKVEAKALMETIKGD 94 Query: 155 RLENFYGKERVLAISDACISPLYID-LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + + + + L D W +L + K IV Sbjct: 95 FFKEILNMHMEDDSKNNEETKDILHCLPFYPDGLAWQLQLTRKDIRRSETYFKLHNFLIV 154 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------- 264 G Q+ + +P + + VLD+CAAPG KTAQLI Sbjct: 155 ETES---GNISRQEVVSMVPPLVLDVKPSHKVLDMCAAPGSKTAQLIEMIHTEEGNSLPE 211 Query: 265 -KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLV 312 V A D+ R L RL+ I DA FD +L Sbjct: 212 GFVIANDLDNNRCYMLVHQSKRLNSPIVLITNHDATILPNFTTTKPDGTKELLKFDRILA 271 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT+R++PD+ + Q +++ +G+ + GG +V+S CSL+ + Sbjct: 272 DVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQFRIVRRGLELLTVGGKMVYSTCSLNPIE 331 Query: 373 SEEVVQKVLRSSPIPVELVPL--------------------------------------- 393 +E V+ ++L + V+LV Sbjct: 332 NEAVLHRILVETQDSVQLVDCRHLVPGLVCDPGISHWLPASKDLQYYESWEDVPEQWQTQ 391 Query: 394 --NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + A E +RI P + GFF L ++ Sbjct: 392 VRPKMFPPKPEDAAKFHFERCMRILPHHQD--------TGGFFVAVLEKV 433 >gi|63054645|ref|NP_594695.2| tRNA (cytosine-5-)-methyltransferase (predicted) [Schizosaccharomyces pombe 972h-] gi|30913511|sp|Q9HGQ2|NCL1_SCHPO RecName: Full=tRNA (cytosine-5-)-methyltransferase ncl1 gi|159884024|emb|CAC05734.2| tRNA (cytosine-5-)-methyltransferase (predicted) [Schizosaccharomyces pombe] Length = 654 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 106/280 (37%), Gaps = 58/280 (20%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK------------- 265 G Q++ + +P L ++ VLD+CAAPG KTAQL+ + K Sbjct: 121 EAGDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITTLLPS 180 Query: 266 --VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------LFDAVLVD 313 V A D +R L + RL+ I+ DA FD +L D Sbjct: 181 GIVIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKKFLKFDRILAD 240 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS GT R++ + + Q K+L++G+ ++ GG +V+S CSL+ ++ Sbjct: 241 VPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLNPIEN 300 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYW---KSIDMAMALSPEGWIRITP------------- 417 E VV VL ++ V LV ++S +S + + + + I P Sbjct: 301 EAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSDLNIYPSFDTLPKELYEKM 360 Query: 418 -----------------DMLEKIDGVSSGMDGFFAVALRR 440 +I GFF L + Sbjct: 361 PPTLWPLPKKELAELNIQNCLRIYPHFQNTGGFFVAVLEK 400 >gi|281354435|gb|EFB30019.1| hypothetical protein PANDA_012595 [Ailuropoda melanoleuca] Length = 728 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 126 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 185 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 186 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLKIDVNGRKEILFYDRILCDVPCSGDGTM 245 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 246 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 305 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S I ++ +G +I P M Sbjct: 306 KSEGALELADVSSELPGLKWMPGITHWKVMTKDGQWFTEWEGVPHSRHTQIRPTMFPPKD 365 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 ++ GFF L + Sbjct: 366 PEKLQAMHLERCLRVLPHHQNTGGFFVAVLVKK 398 >gi|315222698|ref|ZP_07864587.1| NOL1/NOP2/sun family protein [Streptococcus anginosus F0211] gi|315188384|gb|EFU22110.1| NOL1/NOP2/sun family protein [Streptococcus anginosus F0211] Length = 434 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 115/299 (38%), Gaps = 24/299 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 P+ FKE+ N G E + V E + G Sbjct: 1 MHFPKGFKEKYYNLLG-EEAPSFFLTFDEEPVSAFRVNPLKEQQKTFPKPIPDTNWGHYG 59 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVS 262 K +SI + G + + Q+ +A + Q N+ VLDL AAPGGK+ + + Sbjct: 60 KVSGKSIEHITG----LVYSQEPAAQMVAQAAAPQQNMKVLDLAAAPGGKSTHLLSYLNN 115 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTG 320 + + +++ +R + L N++R + + FD +++DAPCS G Sbjct: 116 TGILVSNEINPKRSKVLVENIERFGARNIVVTNESAGRLSQIFQGYFDMIVLDAPCSGEG 175 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ P+ + A QR++L + + GG +++S C+ +++EE+V + Sbjct: 176 MFRKQPEATEYWSETYPAQCAQLQREILADALKMLTTGGELIYSTCTWAPEENEEIVDWL 235 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + +ELV ++ + + + R+ P + F R Sbjct: 236 LENY--SLELVEISKINGMVAGIHFSETA----RMYPHRFKGEGQ--------FVAKFR 280 >gi|300214684|gb|ADJ79100.1| Putative 23S ribosomal RNA m(5)C methyltransferase [Lactobacillus salivarius CECT 5713] Length = 357 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 246 LDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFD 300 +DLCAAPGGK+ Q + + + + +++ +R + L N++R+ I D Sbjct: 1 MDLCAAPGGKSTQLAEQLNNQGLLVSNEINTKRAKILAENMERIGAKNVIITNESPDNLA 60 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 K FD ++VDAPCS G R+ + D + A Q+ +L + + +K GG Sbjct: 61 KVFKGYFDKIVVDAPCSGEGMFRKDHSAVKYWHKDYPAECAHRQKLILEEAMKMLKTGGE 120 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPD 418 +V+S C+ ++ E++V +L + + +E + + + IR+ P Sbjct: 121 LVYSTCTFAPEEDEQIVAWLLENYDLTLEPITKYDGMDSGRPEFADGNKDLAKTIRLMPH 180 Query: 419 MLEKIDGVSSGMDGFFAVALR 439 E F L+ Sbjct: 181 HFEGEGQ--------FLAKLK 193 >gi|45358689|ref|NP_988246.1| putative proliferating-cell nucleolar antigen [Methanococcus maripaludis S2] gi|45047555|emb|CAF30682.1| putative proliferating-cell nucleolar antigen [Methanococcus maripaludis S2] Length = 292 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 26/263 (9%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESI------VSLPGFAEGVWWVQDASASIPVQLFGTL 240 E +L + L + + S P + G +++Q S+ IP Sbjct: 44 EELKTRLEEKGVNLEDTFLDYVFRVVKSPFSMGSTPEYLLGYYFLQSISSIIPSITLNPS 103 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + VLD+CAAPGGKT L + + + A++++K RL+ LR N++R+ +I + Sbjct: 104 KDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTN 163 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 A + K FD +L+DAPC+ + + DI+ A Q +L I +K Sbjct: 164 AVNIDKKLRFDKILLDAPCTGNEVKDSNRV----KTKRDILFCAKRQVELFRTAIEVLKD 219 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CS + ++ E++V+ +L+++ +EL+ L + I+M G +++ P Sbjct: 220 GGELVYSTCSPEIEEDEDIVRYILKTNKN-MELIELTVDDFPGINMIEGEVK-GTLKVIP 277 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 FF R+ Sbjct: 278 PNEP-----------FFIAKFRK 289 >gi|311274134|ref|XP_003134206.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like, partial [Sus scrofa] Length = 710 Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 100/273 (36%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 73 ISRQEAVSMIPPLLLNAQPHHKILDMCAAPGSKTTQLIEMLHADMTVPFPEGFVIANDVD 132 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 133 NKRCYLLVHQAKRLSSPCIMVVNHDAACLPRLQMDVNGRKEVLFYDRILCDVPCSGDGTM 192 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 193 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 252 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S + ++ +G +I P M Sbjct: 253 KSEGALELADVSSELPGLKWMPGLTQWKVMTRDGQWFPAWDDVPQGRHTQIRPTMFPPKD 312 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 +I GFF L + Sbjct: 313 PESLQAMHLERCLRILPHHQNTGGFFVAVLVKK 345 >gi|322498344|emb|CBZ33418.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 848 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 135/371 (36%), Gaps = 46/371 (12%) Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 +++ + A N + V E +Q ++ P RL + I+ Sbjct: 182 EKNGSHPEIASAGNGSRKNVDSEWSAFVQSMST----PLPMTLRLHHSERALEA--IATR 235 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 ++ I V+ + + + E + A Q+ ++ Sbjct: 236 MLTTPDIAAVVRP-VAAFPSTSGLYSCSNSDYHSHKRVEYVCRT-LHAASAVSFQEVVSA 293 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSK-RRLEKL 279 IPV + +V+DLCAAPG KT V + A + + + + L Sbjct: 294 IPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVLIANEKDRVKATQTL 353 Query: 280 RCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLVDAPCSSTGTIRRH 325 L R H D + + FD ++ D PCS GTIR+ Sbjct: 354 PARLKRYHAPNVMTTRCDGVQWPRLYLDDPTNSSSELQELRFDRIICDVPCSGDGTIRKE 413 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 + T + QR LL +G+ + GGI+V+S CS+D ++ EEVV L + Sbjct: 414 RSIATTWSASYVKSLVPTQRALLCRGLDLLATGGILVYSTCSMDPKEDEEVVCVGLEAFG 473 Query: 386 IPVELVPLNSAY------WKSIDMAMALSPEGWIR-ITP-----DMLEKIDGVSSGMDGF 433 VEL+ +N+ S ++ + EG + P + + +I GF Sbjct: 474 DSVELIDVNAVLQQKGFHLHSAGGILSPNVEGMQHPVLPPTYDGNKVLRILPHRDDTGGF 533 Query: 434 FAVALRRLIQP 444 F A R++ QP Sbjct: 534 FVAAFRKVKQP 544 >gi|325263990|ref|ZP_08130723.1| NOL1/NOP2/sun family protein [Clostridium sp. D5] gi|324031028|gb|EGB92310.1| NOL1/NOP2/sun family protein [Clostridium sp. D5] Length = 466 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 17/262 (6%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L + + G P + G++++Q+ SA P VLD+CAAP Sbjct: 54 LEPIPWISNGFYYDGENVQPAKHPYYFAGLYYLQEPSAMTPASRLPVEPGDRVLDVCAAP 113 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLF 307 GGK + + + A D+S R + L NL+ + + E + F Sbjct: 114 GGKATELGARLQGEGVLIANDISNSRAKGLLKNLELFGIGNMLVLSEEPGKLIEYFSEYF 173 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L+DAPCS G R+ ++ + + QR ++ Q + +KPGG++++S C+ Sbjct: 174 DKILIDAPCSGEGMFRKDKKMVKAWEEHGPEFFSRLQRSIITQAAAMLKPGGMLLYSTCT 233 Query: 368 LDKQDSEEVVQKVLRSSPIP----VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 D ++E+ ++ + P +E + +RI P ++ Sbjct: 234 FDASENEQTIEYLRSQYPEFTICPIEPYDGFVQGMPELTEGRDPGLAETVRIFPHRMQGE 293 Query: 424 DGVSSGMDGFFAVALRRLIQPK 445 G + L++ P+ Sbjct: 294 --------GHYLALLKKGCAPE 307 >gi|157375779|ref|YP_001474379.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella sediminis HAW-EB3] gi|254766868|sp|A8FWM8|RSMF_SHESH RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|157318153|gb|ABV37251.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella sediminis HAW-EB3] Length = 478 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 20/253 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG----TLNNLSVLDLCAAP 252 G + + + +G++++Q+AS+ +P ++LD+ +AP Sbjct: 65 WCQDGFWISLDSDVQLGNTVEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAP 124 Query: 253 GGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLF 307 G KT Q ++ + + A + S R++ L N+ R+ + + DA + F Sbjct: 125 GSKTTQIAAMMDNSGLLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYLYDQF 184 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 DA+L+DAPCS GTIR+ P L + A Q+ LL +K GG +V+S C+ Sbjct: 185 DAILLDAPCSGEGTIRKDPLALNNWGLAENSAIAETQKALLESAFLALKTGGSLVYSTCA 244 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L K ++++V + + + P VE L + + D A + EG++ + P + + Sbjct: 245 LSKLENQDVCEHLRSTFPEAVEFESLATLFP---DADKACTDEGFLHVWPQIYDSE---- 297 Query: 428 SGMDGFFAVALRR 440 GFF + + Sbjct: 298 ----GFFIAKITK 306 >gi|149743533|ref|XP_001497025.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Equus caballus] Length = 469 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 43/270 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F + ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDKVLPSYIFLQNLPSALATHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKNTEGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ + ++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L + P ++L P M LS E ++ + + Sbjct: 377 LAENEEQVAWALATFP-DLQLQPQEPRIGGEGMMGAGLSLEQLKQLQRFDPSAVPLQDTD 435 Query: 430 MD-------------------GFFAVALRR 440 MD GFF + Sbjct: 436 MDSLRDARIEDMVRLANNDCIGFFIAKFVK 465 >gi|304409045|ref|ZP_07390666.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS183] gi|307303048|ref|ZP_07582803.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica BA175] gi|304352866|gb|EFM17263.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS183] gi|306913408|gb|EFN43830.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica BA175] Length = 505 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 93 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 152 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321 Query: 434 FAVALRRLI 442 F L + Sbjct: 322 FVAKLTKTA 330 >gi|157867927|ref|XP_001682517.1| methyltransferase [Leishmania major strain Friedlin] gi|68125971|emb|CAJ03980.1| putative methyltransferase [Leishmania major strain Friedlin] Length = 849 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 38/265 (14%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKV 266 A Q+ ++IPV + +V+DLCAAPG KT V + Sbjct: 281 HAASAVSFQEVVSAIPVFVLDVQPQHTVVDLCAAPGSKTVQALDTMLSGGWSADVCRGVL 340 Query: 267 TALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVL 311 A + + + + L L R H D + ++ FD ++ Sbjct: 341 IANEKDRVKATQTLPARLKRYHAPNVMTTRCDGVQWPRLYFNDPTNPSSEPQERRFDRII 400 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GTIR+ + T + QR LL +G+ + GGI+V+S CS++ + Sbjct: 401 CDVPCSGDGTIRKECSIATTWSASYVKSLVPTQRALLCRGLDLLATGGILVYSTCSMNPK 460 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWK------SIDMAMALSPEGWIR-ITP-----DM 419 + EEVV L + VEL+ +N+ + S ++ + EG + P + Sbjct: 461 EDEEVVCVGLEAFGDSVELIDVNAVLQEKGFHLHSAGGILSPNVEGMQHPVLPPTYDGNK 520 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQP 444 + +I GFF A R+ QP Sbjct: 521 VLRILPHRDDTGGFFVAAFRKAKQP 545 >gi|268637929|ref|XP_002649150.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] gi|256012942|gb|EEU04098.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] Length = 789 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 108/343 (31%), Gaps = 45/343 (13%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201 + S P ++ K+ + ++ + T ++ + Sbjct: 150 PSPFSWYPNEM--AWKSSIPKKSFKKNPELSKFHHFLVHHNQQGNITRQEAVSMIPPLFL 207 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 ++ + + PG +L V + + + + Sbjct: 208 DVQSHYNILDMCAAPGSKTTQILEDLHMKHNLENEEIIKRSLKVDGGDSGSSNEKPSIYI 267 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAV 310 + A DV R L RL A + +A ++ D + Sbjct: 268 PKGCIIANDVDTNRCYMLVTQTTRLGSPAIIVTNHEAQNFPLLYSKNSDGSESPIYMDRI 327 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++P+V + Q K+ +G +K GG +V+S CS++ Sbjct: 328 LCDVPCSGDGTTRKNPEVWKKWTHAGSIGLHQLQIKIATRGCQLLKVGGRMVYSTCSMNP 387 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-------------------------- 404 ++E V+ ++++ S ++LV ++S Y I Sbjct: 388 VENEAVIAQIIQKSGGSIKLVDVSSQYPSLIRRPGLHSWTVIDKAGNFPTFESQPEDKKY 447 Query: 405 ------MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +P+ I + + ++ GFF L ++ Sbjct: 448 KLSKTLWPPTPQEAIDMHLEYCMRVYPHLQDTGGFFIAVLEKV 490 >gi|268637927|ref|XP_002649149.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] gi|256012941|gb|EEU04097.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] Length = 765 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 108/343 (31%), Gaps = 45/343 (13%) Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201 + S P ++ K+ + ++ + T ++ + Sbjct: 126 PSPFSWYPNEM--AWKSSIPKKSFKKNPELSKFHHFLVHHNQQGNITRQEAVSMIPPLFL 183 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 ++ + + PG +L V + + + + Sbjct: 184 DVQSHYNILDMCAAPGSKTTQILEDLHMKHNLENEEIIKRSLKVDGGDSGSSNEKPSIYI 243 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAV 310 + A DV R L RL A + +A ++ D + Sbjct: 244 PKGCIIANDVDTNRCYMLVTQTTRLGSPAIIVTNHEAQNFPLLYSKNSDGSESPIYMDRI 303 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++P+V + Q K+ +G +K GG +V+S CS++ Sbjct: 304 LCDVPCSGDGTTRKNPEVWKKWTHAGSIGLHQLQIKIATRGCQLLKVGGRMVYSTCSMNP 363 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA-------------------------- 404 ++E V+ ++++ S ++LV ++S Y I Sbjct: 364 VENEAVIAQIIQKSGGSIKLVDVSSQYPSLIRRPGLHSWTVIDKAGNFPTFESQPEDKKY 423 Query: 405 ------MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +P+ I + + ++ GFF L ++ Sbjct: 424 KLSKTLWPPTPQEAIDMHLEYCMRVYPHLQDTGGFFIAVLEKV 466 >gi|289677564|ref|ZP_06498454.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae FF5] Length = 172 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 14/177 (7%) Query: 268 ALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 A+D+ +RL ++R NLDRL L A + + K F +L+DAPCS+TG IRRH Sbjct: 4 AVDLEAKRLVRVRENLDRLGLDAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRH 63 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+ TR DDI A Q +LL ++ GG++V++ CS ++ +V++ L + Sbjct: 64 PDIKLTRQADDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTS 123 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 EL A + A ++ G DGF+ L ++ Sbjct: 124 GARELDIAGQAGQPPAGIKQA------------HGRQLLAQQGGHDGFYYAKLIKIA 168 >gi|15920908|ref|NP_376577.1| Sun family protein [Sulfolobus tokodaii str. 7] gi|15621692|dbj|BAB65686.1| 370aa long hypothetical sun protein [Sulfolobus tokodaii str. 7] Length = 370 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 33/301 (10%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVML------PT 200 +P+W KERL ++ S +I + +K +++ L Sbjct: 89 LPQWVKERL----SYIKLDDFSKLFHKKTWIRVNTLKVNVKEAISSLMKKGFELVRDDFD 144 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TA 257 ++ P I F +G +QD ++ V + +L++ +APG K Sbjct: 145 FLFQVTRFPFRISKTEEFQKGEIVIQDKASVYVVTVLDPKPYERILEVGSAPGMKTSLIQ 204 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QL + A V ALD+S++R++ R ++++ + ++I D + P K D +L+DAPCS Sbjct: 205 QLTNNKAYVIALDISEKRIQVQRELMEKMGVENYELIVADGENL-PIKEVDKILIDAPCS 263 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 ++GTI P V + +D++K + Q+++L + KP VV+S CSL ++ E++V Sbjct: 264 NSGTINADPSVFLRLNKNDVIKLSRLQKEILREASKLRKP---VVYSTCSLFPEEGEKIV 320 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + + ++ + + L +R P + G +GFF Sbjct: 321 E----KYSDYLVKLTNDPTHYGYMRSKVWLR---VMRFYPHI--------HGTEGFFISK 365 Query: 438 L 438 L Sbjct: 366 L 366 >gi|29839833|ref|NP_828939.1| Nol1/Nop2/Sun family protein [Chlamydophila caviae GPIC] gi|29834180|gb|AAP04817.1| Nol1/Nop2/Sun family protein [Chlamydophila caviae GPIC] Length = 371 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 78/422 (18%), Positives = 132/422 (31%), Gaps = 82/422 (19%) Query: 23 ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL 82 + + R L +D+ + A + LR ++A++ Sbjct: 19 TPIGEANRVALYFKQHRSLGSKDRQWISARIFAILRHRRLLEALIQQ------------- 65 Query: 83 QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRI 142 D V AK ++ + + Sbjct: 66 -----------------DNQEVTPETLVAKVEEG-------------VLDDIEKYQDLPW 95 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 + + E L YG+ER + + + + V + + P Sbjct: 96 PVRYSVSDDLAECLIEDYGQERAKELCEIFLHEAPCAIRVNTRRTSVEDLQKRLEYPCTP 155 Query: 203 IRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + + + F G++ VQD S+ VLD CA GGK+ Sbjct: 156 GSVPGSLCFDKRYPLQHSAAFHRGLFEVQDESSQKIALGIPISKKDRVLDFCAGAGGKSL 215 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 L V D K LE+ + L R I E V+VDAPC+ Sbjct: 216 ILAERAHHVVLHDSRKDILEEAKQRLRRAGARNFSIGEQHLRRNSFS----IVVVDAPCT 271 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 +G RRHP+ + + QRK+L + + +VKPGG +++ CSL Q++E+ V Sbjct: 272 GSGVFRRHPEKKSQFSKKLLTTFSQVQRKILREAMHYVKPGGRLIYITCSLLSQENEKQV 331 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 ++ + + + + ALS E DGFFA Sbjct: 332 -AFMK-----------SLGWEEERHVHTALSAE------------------SGDGFFAAH 361 Query: 438 LR 439 Sbjct: 362 FV 363 >gi|34763758|ref|ZP_00144676.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886472|gb|EAA23729.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 190 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 14/196 (7%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN + V+ +L+S V K L+ + ++ +++ + I +R +D Sbjct: 1 MNVKQVAINLISQVD-KGAYSNIALNETFK---TLNINSKEKAFITEIFYGVIRNKKFLD 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ KK ++ LLR+S+ QI ++D + VV A E AK+ +K + Sbjct: 57 YIIEKNTK---EIKKEWIRNLLRISIYQITFMDSDNKGVVWEATELAKKKYG-VPISKFI 112 Query: 125 NSILRRVSREKIE------LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N LR R K + + IP+WF + LE YG E + + Y+ Sbjct: 113 NGTLRNYLRNKDSELKSLADKKNYEVLYSIPKWFCDMLEKQYGNENLKQAITSLKKIPYL 172 Query: 179 DLTVKFDIETWAHKLN 194 + V W LN Sbjct: 173 SVRVNKLKYYWKKNLN 188 >gi|123475525|ref|XP_001320940.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3] gi|121903755|gb|EAY08717.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3] Length = 581 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 39/262 (14%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----VSGAKVTALDVSKR 274 G Q+ + IP + +LD+CA+PG KT+Q++ V A D+ + Sbjct: 121 KMGYIRRQELVSMIPHHFMQVSKDDVILDMCASPGSKTSQIVESLSQGNGLVIANDIDLK 180 Query: 275 RLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 R L + + + + FD +L D PCS GT+R+ +V + Sbjct: 181 RCYTLLHQVQEIGTSKVLVTCNAAQYLPDFGIKFDKILADVPCSGDGTVRKDSNVASSWK 240 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 ++ QR +L +G+ +K GG +V+S CS++ + E V+ VL P VE+V Sbjct: 241 PNNSTAMHGLQRAILKRGLELLKVGGTLVYSTCSMNPIEDEAVIGSVLSEIPGCVEIVDT 300 Query: 394 NSAYWK----------SIDMAMALSPEGWIR------------------ITP------DM 419 +S + + +P +R + P + Sbjct: 301 SSIFPTLKRHSGLTSWPVYTVSKENPNEMLRYELHSDVPDNLKGQVSKTMFPSGVEGLNN 360 Query: 420 LEKIDGVSSGMDGFFAVALRRL 441 + GFF L++L Sbjct: 361 CMRFFPHYENSGGFFVTVLKKL 382 >gi|123424241|ref|XP_001306540.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3] gi|121888120|gb|EAX93610.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3] Length = 619 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 97/260 (37%), Gaps = 38/260 (14%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV----------TA 268 G + Q+ + IP + VLD+CAAPG KT Q+I K A Sbjct: 132 RSGDFSRQELVSMIPPYFLDVQPDHFVLDMCAAPGSKTTQVIEMMLKKANGKPLSGIVVA 191 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 +V+ +R L L RL + + + FD ++ D PCS GT+R+ PD Sbjct: 192 NEVNAKRCHTLAGRLQRLDNRQIIVTSHEGQQFPELIKFDRIVCDVPCSGDGTLRKSPDA 251 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + QR +L + + +K GG V+S CSL+ + E V+ VL+ V Sbjct: 252 GPNWKLSEGQNLHVLQRAILTKALRLLKVGGRCVYSTCSLNPIEDEAVISSVLKECKGNV 311 Query: 389 ELVPLNSAY-----------------WKSIDMAMALSPEGWIRI----TP-------DML 420 +++ ++ + K + E R+ P + Sbjct: 312 KILDVSDKFTDLKRTKGLKSWHVVTDEKEYMNPEEVPEEKKRRVPSSMFPIDVVEGIENS 371 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + GFF L + Sbjct: 372 MRFLPHLNDTGGFFVCVLEK 391 >gi|194224036|ref|XP_001501273.2| PREDICTED: NOL1/NOP2/Sun domain family, member 2 [Equus caballus] Length = 759 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNAHPHHKILDMCAAPGSKTAQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTIDVNGRKEVLFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLVEGGRMVYSTCSLNPIEDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL ++S + ++ +G +I P M Sbjct: 338 KSEGALELADVSSELPGLKWMPGLTQWKVMTKDGQWFAEWDDVPHNRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 +I GFF L + Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 430 >gi|119628512|gb|EAX08107.1| NOL1/NOP2/Sun domain family, member 2, isoform CRA_c [Homo sapiens] Length = 602 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 94/269 (34%), Gaps = 61/269 (22%) Query: 238 GTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + +LD+CAAPG KT + V A DV +R L RL Sbjct: 8 NVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLS 67 Query: 288 LYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 ++ DA +D +L D PCS GT+R++ DV T + Sbjct: 68 SPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNS 127 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 ++ Q ++ +G + GG +V+S CSL+ + E V+ +L S +EL +++ Sbjct: 128 LQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNEL 187 Query: 398 W-----KSIDMAMALSPEGWI-------------RITPDMLE----------------KI 423 I ++ +G +I P M +I Sbjct: 188 PGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRI 247 Query: 424 DGVSSGMDGFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 248 LPHHQNTGGFFVAVLVKKSSMPWNKRQPK 276 >gi|255014668|ref|ZP_05286794.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_7] Length = 465 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + A + + + + + T A K A + S P F G Sbjct: 17 EEFDRLEAALSADVPVSIRINHSKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76 Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 ++VQ+AS+ Q + LDLCAAPGGK+ L G+ + + +V + R Sbjct: 77 YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPKGSLLVSNEVIRSRSY 136 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N+ + +I D + FD ++ D PCS G R+ D D Sbjct: 137 VLAENIAKWGRPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ A R+++ + +KPGGI+++S C+ + ++ EE + ++ +P Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P GFF ALR+ Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290 >gi|195996847|ref|XP_002108292.1| hypothetical protein TRIADDRAFT_19981 [Trichoplax adhaerens] gi|190589068|gb|EDV29090.1| hypothetical protein TRIADDRAFT_19981 [Trichoplax adhaerens] Length = 704 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 116/329 (35%), Gaps = 74/329 (22%) Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + D W L + T +K + G + Q+A + IP Sbjct: 98 PPQPIPWYPDELAWQINLTKSTIKTSKEMMKLKKLLVDETAL---GNFSRQEAVSMIPPL 154 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV----------TALDVSKRRLEKLRCNLDR 285 L + VLD+CAAPG KTAQLI + A D +R L R Sbjct: 155 LLDVQPHHYVLDMCAAPGSKTAQLIEFLHQDSSKIIPDGLIIANDADNKRCYMLVHQSKR 214 Query: 286 LHLYAEDIIEMDAFDYCP------------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 L+ I DA ++D +L D PCS GT+R++ + + Sbjct: 215 LNSPCFMITNYDASTMPNIYISKDGISKNIPIVYDRILCDVPCSGDGTLRKNIMLWKRWN 274 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 ++ + C Q ++L++G+ + GI+V+S CS + ++E ++ +L+ + ++LV + Sbjct: 275 QNNALSLHCLQLRILIRGVELLARDGILVYSTCSFNPIENEAIIAALLKKAGGSIKLVDV 334 Query: 394 NSA-----------------------------------------YWKSIDMAMALSPEGW 412 + + S A + + Sbjct: 335 SDKLPALKRRSGMNTWKVLSKQGNWYNNFSDVPVSDSAMIKPSMFPPSESEAQEMHLDRC 394 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +RI P GFF L+++ Sbjct: 395 LRILPQDQ--------NTGGFFVAVLQKV 415 >gi|257096817|sp|A3D5D5|RSMF_SHEB5 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 486 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 74 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 133 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 194 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGADRATTAEGFLHVWPQIYDSE--------GF 302 Query: 434 FAVALRRLI 442 F L + Sbjct: 303 FVAKLTKTA 311 >gi|126174668|ref|YP_001050817.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica OS155] gi|125997873|gb|ABN61948.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS155] Length = 505 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 93 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSAKWQCVLDLASAPGSKTTQ 152 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGADRATTAEGFLHVWPQIYDSE--------GF 321 Query: 434 FAVALRRLI 442 F L + Sbjct: 322 FVAKLTKTA 330 >gi|225568054|ref|ZP_03777079.1| hypothetical protein CLOHYLEM_04127 [Clostridium hylemonae DSM 15053] gi|225163150|gb|EEG75769.1| hypothetical protein CLOHYLEM_04127 [Clostridium hylemonae DSM 15053] Length = 460 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 57/254 (22%), Positives = 111/254 (43%), Gaps = 17/254 (6%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 V G S P + G++++Q+ SA P VLDLCAAPGGK Sbjct: 57 VPWIPNGFYYDGETVSPSKHPYYFAGLYYLQEPSAMTPASRLPVNPGEKVLDLCAAPGGK 116 Query: 256 TAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAV 310 + + + A D+S R + L N++ + I+ + FD + Sbjct: 117 ATELGAELCGTGVLAANDISSSRAKGLLKNVEVFGIGNMLILSEEPGRLSGYFPGYFDKI 176 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS G R+ ++ + + Q+ +++Q ++PGG++++S C+ D Sbjct: 177 LIDAPCSGEGMFRKDRKMVRAWEEHGPEFFSSIQKSIIVQAADMLRPGGMMMYSTCTFDG 236 Query: 371 QDSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGV 426 +++E+ V+ +L++ P +++ P +++ PE +RI P ++ Sbjct: 237 RENEQTVEHLLKNRPEFEIMDMEPYEGFSPGRPELSETHCPELVRTVRIFPHHMKGE--- 293 Query: 427 SSGMDGFFAVALRR 440 G + L++ Sbjct: 294 -----GHYLALLKK 302 >gi|189468570|ref|ZP_03017355.1| hypothetical protein BACINT_04973 [Bacteroides intestinalis DSM 17393] gi|189436834|gb|EDV05819.1| hypothetical protein BACINT_04973 [Bacteroides intestinalis DSM 17393] Length = 481 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 23/308 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVMLPT 200 +P F +R + G E ++DA + + + + + H + + + Sbjct: 1 MDLPVSFADRTRSLLGDEEYNKLADALNDEQPVSIRLNEEKLPGSSFSLFHASSDRVPWS 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTA 257 + + P F G ++VQ+AS+ Q +LDLCAAPGGK+ Sbjct: 61 ATGCYLDRRLTFTFDPLFHAGCYYVQEASSMFVEQALKQYIGERPSVMLDLCAAPGGKST 120 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313 G+ + A +V + R + L NL + + D D+ + FD +L D Sbjct: 121 HARSVLPVGSLLVANEVIRNRSQILAENLTKWGHPGVVVTNNDPADFAGLEDFFDVILTD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS G R+ P + +++ QR+++ +KPGG++++S C+ + ++ Sbjct: 181 VPCSGEGMFRKDPVAVSEWSPENVEICWQRQRRIISDIWPSLKPGGLLIYSTCTYNTKED 240 Query: 374 EEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 EE ++ + E++P++ A W +A R P + G Sbjct: 241 EENIRWM--HDEFGAEILPVDAPAEWNITGNLLAGEDFPVYRFLPHRTKGE--------G 290 Query: 433 FFAVALRR 440 FF LR+ Sbjct: 291 FFLAVLRK 298 >gi|291411162|ref|XP_002721865.1| PREDICTED: NOL1/NOP2/Sun domain family, member 2 [Oryctolagus cuniculus] Length = 735 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 98/273 (35%), Gaps = 54/273 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 137 ISRQEAVSMIPPLLLSVQPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 196 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 197 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQMDVDGRKEILFYDRILCDVPCSGDGTM 256 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 257 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 316 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 317 KSEGALELADVSAELPGLKWMPGLTQWKVMTRDGQWFADWDEVPHSRHTQIRPTMFPPKD 376 Query: 422 -------------KIDGVSSGMDGFFAVALRRL 441 +I GFF L + Sbjct: 377 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKK 409 >gi|328858613|gb|EGG07725.1| hypothetical protein MELLADRAFT_85533 [Melampsora larici-populina 98AG31] Length = 729 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 106/304 (34%), Gaps = 63/304 (20%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 L+ + P F + Q+A + +P L V D CAA Sbjct: 117 WELRASKHVVRKSPEFKKFQNFLVYETEAGNISRQEAVSMVPTLLLDVQPQHFVFDACAA 176 Query: 252 PGGKTAQLIVSGAKV---------TALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDY 301 PG KTAQL+ S A D +R + +L RL + I DA Y Sbjct: 177 PGSKTAQLVESIHSSKSLIPPGLLIANDSDYKRSHLLVHQSLRRLPSPSTMITNHDASMY 236 Query: 302 C------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 LFD +L D PCS GT+R++ + + V Q ++L + I+ + Sbjct: 237 PSLKIDGKPLLFDRILCDVPCSGDGTLRKNGGIWRDWTPANGVGLHGLQMRILSRCIALL 296 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR- 414 KPGG +V+S CSL+ ++E V+ L P + LV ++ + + + R Sbjct: 297 KPGGRMVYSTCSLNPLENEAVLSATLNLHP-EMTLVDVSDKLPELKRRPGMTTWKVMNRT 355 Query: 415 -------------------------ITPD---------MLEKIDGVSSGMDGFFAVALRR 440 + PD +I GFF L + Sbjct: 356 LGKNDEVKSYDDLEGDENKARYSATLWPDGKEQAKGLERCLRIYPHLQNTGGFFVAVLVK 415 Query: 441 LIQP 444 P Sbjct: 416 AKGP 419 >gi|298375932|ref|ZP_06985888.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_19] gi|298266969|gb|EFI08626.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_19] Length = 465 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + A + + + + + T A K A + S P F G Sbjct: 17 EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76 Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 ++VQ+AS+ Q + LDLCAAPGGK+ L G+ + + +V + R Sbjct: 77 YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N+ + +I D + FD ++ D PCS G R+ D D Sbjct: 137 VLAENIAKWGHPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ A R+++ + +KPGGI+++S C+ + ++ EE + ++ +P Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P GFF ALR+ Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290 >gi|256841167|ref|ZP_05546674.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides sp. D13] gi|256737010|gb|EEU50337.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides sp. D13] Length = 465 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + A + + + + + T A K A + S P F G Sbjct: 17 EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76 Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 ++VQ+AS+ Q + LDLCAAPGGK+ L G+ + + +V + R Sbjct: 77 YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N+ + +I D + FD ++ D PCS G R+ D D Sbjct: 137 VLAENIAKWGHPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ A R+++ + +KPGGI+++S C+ + ++ EE + ++ +P Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P GFF ALR+ Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290 >gi|255505682|ref|ZP_05347531.3| rRNA methylase [Bryantella formatexigens DSM 14469] gi|255266515|gb|EET59720.1| rRNA methylase [Bryantella formatexigens DSM 14469] Length = 562 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 108/307 (35%), Gaps = 61/307 (19%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E A + E ++ P + G++++Q+ SA P + VL Sbjct: 57 ERLAPFHLKKIPWVKNGYFYEEQDAPARHPFYYAGLYYLQEPSAMTPASVLPVHPGDRVL 116 Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 DLCAAPGGK + + + A D+S R + L N++ + + Sbjct: 117 DLCAAPGGKATELGAKLRGEGLLVANDISASRAKALLKNIEVFGISNAFVTNEVPAKLAE 176 Query: 304 KKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD +LVDAPCS G R+ P D A Q++++L+ + PGG++ Sbjct: 177 QFPEFFDKILVDAPCSGEGMFRKDPAAAGAWDVKKSFACAKQQKEIILRAAQMLAPGGLL 236 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------- 410 ++S C+ +++E+V+ +L +EL+ + S + A + Sbjct: 237 LYSTCTFSPEENEQVIAYLLDKR-DDMELLEIPQYEGFSPGIPAAARADWIEADDGLMEA 295 Query: 411 ------------------------------------GWIRITPDMLEKIDGVSSGMDGFF 434 +RI P ++ G F Sbjct: 296 DALVALAEKKWAAAGRFTNQHGEEPDLAEDRYAELKKCVRIFPHKMQGE--------GHF 347 Query: 435 AVALRRL 441 L R Sbjct: 348 LALLHRK 354 >gi|116617804|ref|YP_818175.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096651|gb|ABJ61802.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 470 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 32/242 (13%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ SA ++ VLDL AAPGGK+ + + + ++ R + L Sbjct: 76 VYSQEPSAQFVGEVVRPNPGERVLDLAAAPGGKSTHLAAFMGQKGLLWSNEIFLNRAKIL 135 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R+ + + + K FD +L+DAPCS G R+ P + Sbjct: 136 SENIERMGIKNAIVSSHTPAELSSKLPGFFDKILLDAPCSGEGMFRKDPGAIAYWHEHYP 195 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 ++A QR++L + + ++PGG +V+S C+ ++ E+++ ++ + P + Sbjct: 196 AENATRQREILTEAVKMLRPGGQIVYSTCTFAPEEDEQIINWLMAAYPEFSLVSIEKPDG 255 Query: 398 WKSIDMAMALSPEGWI-------------------RITPDMLEKIDGVSSGMDGFFAVAL 438 D E ++ R+ P LE G F L Sbjct: 256 ANLSDARPEWIDEAFVNGTTEHSATTTKDVMKKAARLWPHKLEGE--------GHFVAKL 307 Query: 439 RR 440 + Sbjct: 308 VK 309 >gi|170097227|ref|XP_001879833.1| predicted protein [Laccaria bicolor S238N-H82] gi|164645236|gb|EDR09484.1| predicted protein [Laccaria bicolor S238N-H82] Length = 749 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 106/330 (32%), Gaps = 98/330 (29%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + +++ P F + Q+ + +P + V+D+CAA Sbjct: 118 WQFNVSKKALRKSPEFKKFHSFLVYETEVGNISRQEGVSMLPPLFLEVEPHHKVMDMCAA 177 Query: 252 PGGKTAQ-------------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 PG KTAQ + V A D +R L RL A + +DA Sbjct: 178 PGSKTAQLLEALHANDTITSTSIPPGLVLANDSDNKRTHLLIHQSARLPSPALMVTNLDA 237 Query: 299 FDYC---------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +Y + +FD +L D PCS GT+R++ + T D Sbjct: 238 SNYPGIQIPVVTQDGGTQMDQLMFDRILCDVPCSGDGTMRKNMGIWKGWSTMDGNGLHSL 297 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK---- 399 Q ++L + ++ + G +V+S CSL+ ++E VV + L ++ ELV + Sbjct: 298 QVRILQRAMNLLAKDGRIVYSTCSLNPVENEAVVAEALNNNH-DFELVDVTPKLPSLKRR 356 Query: 400 ----------------------------------------------SIDMAMALSPEGWI 413 + L+ + Sbjct: 357 PGLTSWIPTVIIDKVNKIDMPFPTYEQFKTSDSDQTLKDKMSKGCWPPENVDKLNLTRCL 416 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 RI P + + GFF L + + Sbjct: 417 RIYPHLQDSG--------GFFVAVLEKKGK 438 >gi|257096819|sp|A9L4E6|RSMF_SHEB9 RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF Length = 486 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 74 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSTKWQCVLDLASAPGSKTTQ 133 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 134 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 193 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 194 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 253 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 254 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 302 Query: 434 FAVALRRLI 442 F L + Sbjct: 303 FVAKLTKTA 311 >gi|160875680|ref|YP_001554996.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella baltica OS195] gi|160861202|gb|ABX49736.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS195] gi|315267869|gb|ADT94722.1| RNA methylase, NOL1/NOP2/sun family [Shewanella baltica OS678] Length = 505 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 107/249 (42%), Gaps = 16/249 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 +L E I L E + + P + VLDL +APG KT Q Sbjct: 93 YDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTTSTKWQCVLDLASAPGSKTTQ 152 Query: 259 L---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVD 313 + + + + A + S R++ L N+ R+ + D + + FDAVL+D Sbjct: 153 MAALMQNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDAVLID 212 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APC GT+R+ D L DD++ + Q+ L+ +KPGG +V+S C+L++ ++ Sbjct: 213 APCGGEGTVRKDADALKHWSLDDVLAISETQKALIESAFLALKPGGSLVYSTCTLNRLEN 272 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + V + + + V+ L+ + A + EG++ + P + + GF Sbjct: 273 QGVCEYLKQVYGDAVQFESLSDLF---DGAERATTAEGFLHVWPQIYDSE--------GF 321 Query: 434 FAVALRRLI 442 F L + Sbjct: 322 FVAKLTKTA 330 >gi|24374151|ref|NP_718194.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella oneidensis MR-1] gi|81461270|sp|Q8EDY2|RSMF_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|24348654|gb|AAN55638.1|AE015702_8 NOL1/NOP2/sun family protein [Shewanella oneidensis MR-1] Length = 474 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 119/251 (47%), Gaps = 18/251 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 G + E + + +G++++Q+AS+ +P + VLDL AAPG Sbjct: 65 WCKDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLAAAPGS 124 Query: 255 KTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 KT Q+ + + + A + S R++ L N+ R+ + D + + FDA Sbjct: 125 KTTQMAALMNNQGLLVANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYESFDA 184 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPC GT+R+ D L + D+++ + Q+ L+ +KPGG +V+S C+L+ Sbjct: 185 VLIDAPCGGEGTVRKDVDALKSWSLDEVIAISETQKALIESAFLALKPGGSLVYSTCTLN 244 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + +++ V + + ++ V+ L+ + A +PEG++ + P + + Sbjct: 245 RHENQGVCEYLQQTYGNAVQFESLSQLF---DGADKATTPEGFLHVWPQIYDSE------ 295 Query: 430 MDGFFAVALRR 440 GFF L + Sbjct: 296 --GFFVAKLTK 304 >gi|157138266|ref|XP_001664204.1| hypothetical protein AaeL_AAEL013968 [Aedes aegypti] gi|108869539|gb|EAT33764.1| conserved hypothetical protein [Aedes aegypti] Length = 752 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 59/283 (20%), Positives = 100/283 (35%), Gaps = 70/283 (24%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---------LIVSGAKVTALDVSK 273 Q+A + IP + G VLD+CAAPG KTAQ + V A D+ Sbjct: 158 ISRQEAVSMIPPLVLGVEPQHKVLDMCAAPGSKTAQLIEALHAGGENLPTGFVMANDIDN 217 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTI 322 R L RL + D+ ++ +D +L D PCS GT+ Sbjct: 218 NRCYMLVHQAKRLSSPCCVVTNADSSNFPNLKLKTESGEMQTLKYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+ +L Sbjct: 278 RKNPDIWTKWNLQHACNLHGLQYRIVRRGAELLEVGGKLVYSTCSLNPIENEAVLHYLLT 337 Query: 383 SSPIPVELVPLNSA-----------------------------------------YWKSI 401 + +E+V + + + Sbjct: 338 QTGDAMEIVDASHLLPSLKHNPGITYWEPATKDMKFYKTFDEVPQMYHTIIRPQMFPPAP 397 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + + E IR+ P GFF L + +P Sbjct: 398 EDVAKFNLEKCIRVMPH--------QQNTGGFFIALLEKK-KP 431 >gi|46250336|gb|AAH68818.1| LOC414460 protein [Xenopus laevis] Length = 713 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 141/418 (33%), Gaps = 69/418 (16%) Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148 + + Y ++ + Q + + + K ++++ RE + RI G Sbjct: 30 AAWEGGYPEIIKENKLFEHYYQELKIVPDGEWDKFMDAL-----REPLPATIRITGYKSH 84 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 + L+ Y KE D L+ + W L+ ++ K Sbjct: 85 AKEILHCLKEKYFKELPDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 144 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 145 QFLVSETES---GNISRQEAVSMIPPVLLNVQPHHKILDMCAAPGSKTAQIIEMLHADMN 201 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308 + V A DV +R L RL+ ++ DA +D Sbjct: 202 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLIENNGSREVLYYD 261 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CSL Sbjct: 262 RILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 321 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI---------- 413 + + E V+ +L S +EL + S I ++ EG Sbjct: 322 NPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTS 381 Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 382 RHTQIRPTMFPLKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 439 >gi|118600701|gb|AAH25549.1| Nsun2 protein [Mus musculus] Length = 498 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 100/274 (36%), Gaps = 54/274 (19%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVS 272 Q+A + IP L + +LD+CAAPG KT QLI V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ + E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ + ++ +G +I P M Sbjct: 338 KSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI 442 +I GFF L + Sbjct: 398 LEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKA 431 >gi|147898427|ref|NP_001084513.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Xenopus laevis] gi|82228491|sp|Q4V7N2|NSUN2_XENLA RecName: Full=tRNA (cytosine-5-)-methyltransferase NSUN2; AltName: Full=NOL1/NOP2/Sun domain family member 2 gi|66912076|gb|AAH97814.1| LOC414460 protein [Xenopus laevis] Length = 698 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 141/418 (33%), Gaps = 69/418 (16%) Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII 148 + + Y ++ + Q + + + K ++++ RE + RI G Sbjct: 30 AAWEGGYPEIIKENKLFEHYYQELKIVPDGEWDKFMDAL-----REPLPATIRITGYKSH 84 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 + L+ Y KE D L+ + W L+ ++ K Sbjct: 85 AKEILHCLKEKYFKELPDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRKSPELEKFH 144 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQ 258 + G Q+A + IP L + +LD+CAAPG KT Sbjct: 145 QFLVSETES---GNISRQEAVSMIPPVLLNVQPHHKILDMCAAPGSKTAQIIEMLHADMN 201 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFD 308 + V A DV +R L RL+ ++ DA +D Sbjct: 202 VPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLIENNGSREVLYYD 261 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS GT+R++ DV T + ++ Q ++ +G+ + GG +V+S CSL Sbjct: 262 RILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMVYSTCSL 321 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI---------- 413 + + E V+ +L S +EL + S I ++ EG Sbjct: 322 NPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKWEDVPTS 381 Query: 414 ---RITPDMLE----------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I P M +I GFF L + QPK Sbjct: 382 RHTQIRPTMFPLKDEEKLKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMPWNKRQPK 439 >gi|281423530|ref|ZP_06254443.1| NOL1/NOP2/sun family protein [Prevotella oris F0302] gi|281402350|gb|EFB33181.1| NOL1/NOP2/sun family protein [Prevotella oris F0302] Length = 430 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 111/311 (35%), Gaps = 21/311 (6%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL----NAVMLP 199 +P+ F E G+E A+ + + + A + Sbjct: 1 MTMNLPKDFIEYTRRLMGEEMYAALEKGMQEEAPVSIRLNPFKLNTAQVCVKDRETDVPW 60 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTA 257 + P G+++VQ+A++ + +LDLCA+PGGK+ Sbjct: 61 CRNAMYLTSRPNFTFDPMLHAGLYYVQEAASMFVDHVLREVVKKPVRMLDLCASPGGKST 120 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVD 313 +G+ + + + ++R L N+ + + + K FD +L D Sbjct: 121 CAYAALPAGSLLFSNEPIRQRANILNENVLKFGVPDIIVTNNYARDYQQSKLQFDVILTD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS G R+ + + + A QR+++ S +KPGG++++S C+ + + Sbjct: 181 VPCSGEGMFRKDAGAIDDWSMKKVEECARLQREIVSDIWSCLKPGGLLIYSTCTFNAHED 240 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE V + + +P A+ M + R P G Sbjct: 241 EENVAWIAKELGADFIEIPTEKAW---NIMGSLIDKNPVYRFVPGKTRGE--------GL 289 Query: 434 FAVALRRLIQP 444 F LR+ +P Sbjct: 290 FMAVLRKYGEP 300 >gi|221122446|ref|XP_002154232.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 452 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 106/255 (41%), Gaps = 39/255 (15%) Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 +++ Q+ + + + + +LD+CA+PGGKT+ + + + + A+D S++++ K Sbjct: 200 LFFPQNLPSILVGHICNPQDGDLILDMCASPGGKTSHVAVLMKNQGTIIAIDKSEKKISK 259 Query: 279 LRCNLDRLHLYAEDII------------------------EMDAFDYCPKKLFDAVLVDA 314 + N + L + D P FD +L+D Sbjct: 260 ITENCVIMGLTNVKCFAYDSSKLCCHEACDNSKLSFDEQNKNDLKPPFPPCFFDKILLDP 319 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G + P + ++ +Q+KL Q +S +KPGG +++S C+L Q++E Sbjct: 320 PCSGIG---QRPQLRSVLTDKELQSYPIYQKKLFQQAVSLLKPGGRLIYSTCTLLPQENE 376 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW--IRITPDML------EKIDGV 426 E + L++ ++L+ + + LSPE ++ + + Sbjct: 377 EQISWALKTFK-ELKLLKQDIIIGRPGLNNYGLSPEECDKVQRFDQCYLNSLENDLYRSL 435 Query: 427 SSGMDGFFAVALRRL 441 GFF L ++ Sbjct: 436 EFDTIGFFIACLTKI 450 >gi|84995588|ref|XP_952516.1| sun-family protein [Theileria annulata strain Ankara] gi|65302677|emb|CAI74784.1| sun-family protein, putative [Theileria annulata] Length = 383 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 59/326 (18%), Positives = 108/326 (33%), Gaps = 42/326 (12%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 + R P+ E ++ YG E+ + I + L V Sbjct: 83 LSDRWRLMTNNKSLPPHVRCSFPQELFELIDEEYGLEKAIKICNILNEEPVTFLRVNTLK 142 Query: 185 -DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLF 237 + L +P + P + G+ +QD S+ I Q Sbjct: 143 LSRDKAYKFLLHKGVPVEKCVFSNCGLFVQDKRKLLESPEYKSGIVEIQDESSQIIGQNI 202 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD C GGK + + ++ DV+ L+K + + R + I+ Sbjct: 203 NCSEGDHVLDFCCGSGGKSLVFGPKLGNRGRIYLHDVNDNLLQKAKKRMHRAGIRNYYIL 262 Query: 295 EMD-AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + D V+VD PCS G R +PD W+ +++ QR ++ + + Sbjct: 263 DRNLENIETFYGKMDYVIVDVPCSGIGACRTNPDRKWSFKRENLNGLLMNQRLIVEESLP 322 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 F+K G +V+ CS+ K +++ V + Sbjct: 323 FLKKNGKLVYITCSIFKAENQSQVDFFSKKYN---------------------------- 354 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALR 439 + P+ S GM+G++ L Sbjct: 355 -LRPEEQILQLPESRGMNGYYMATLV 379 >gi|301311882|ref|ZP_07217804.1| NOL1/NOP2/sun family protein [Bacteroides sp. 20_3] gi|300829984|gb|EFK60632.1| NOL1/NOP2/sun family protein [Bacteroides sp. 20_3] Length = 465 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + A + + + + + T A K A + S P F G Sbjct: 17 EEFDRLEAALNADVPVSIRINSMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76 Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 ++VQ+AS+ Q + LDLCAAPGGK+ L G+ + + +V + R Sbjct: 77 YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N+ + +I D + FD ++ D PCS G R+ D D Sbjct: 137 VLAENIAKWGRPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ A R+++ + +KPGGI+++S C+ + ++ EE + ++ +P Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P GFF ALR+ Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290 >gi|224536159|ref|ZP_03676698.1| hypothetical protein BACCELL_01025 [Bacteroides cellulosilyticus DSM 14838] gi|224522241|gb|EEF91346.1| hypothetical protein BACCELL_01025 [Bacteroides cellulosilyticus DSM 14838] Length = 481 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 23/308 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVMLPT 200 +P F +R G E ++DA + + + + + H + + + Sbjct: 1 MDLPVSFADRTRLLLGDEEYNKLADALNGEQPVSIRLNEEKLPDSSFSLFHTSSGRVPWS 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTA 257 + + P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 STGFYLDRRLTFTFDPLFHAGCYYVQEASSMFVEQALKQYIGETPSVMLDLCAAPGGKST 120 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVD 313 +G+ + A +V + R + L NL + + D D+ + FD +L D Sbjct: 121 HARSVLPAGSLLVANEVIRNRSQILAENLTKWGHPGVVVTNNDPADFADLEGFFDVILTD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS G R+ P + +++ QR+++ +KPGG++++S C+ + Q+ Sbjct: 181 VPCSGEGMFRKDPVAVSEWSPENVEICWQRQRRIISDIWPSLKPGGLLIYSTCTYNTQED 240 Query: 374 EEVVQKVLRSSPIPVELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 EE ++ + E++P++ A W +A R P + G Sbjct: 241 EENIRWM--RDEFGAEILPVDAPAAWNITGNLLAGEDFPVYRFLPHRTKGE--------G 290 Query: 433 FFAVALRR 440 FF LR+ Sbjct: 291 FFLAVLRK 298 >gi|332829260|gb|EGK01914.1| hypothetical protein HMPREF9455_00036 [Dysgonomonas gadei ATCC BAA-286] Length = 457 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 17/231 (7%) Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALD 270 P F G ++VQ+AS+ Q +++ VLDLCAAPGGK A L+ + + + + Sbjct: 68 PLFHAGCYYVQEASSMFIGQALKQYAEDDVKVLDLCAAPGGKSTLIADLLNKDSLLVSNE 127 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 V + R L N+ + +I D K FD +LVDAPCS G R+ + Sbjct: 128 VIRSRANVLSENMTKWGNPNVVVINNDPAQIGKLKGFFDIILVDAPCSGEGMFRKDEGAI 187 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 D+ Q+++L +KP G++++S C+ + +++EE VQ + V Sbjct: 188 SEWSVDNARLCKERQQRILADIWPALKPDGLLLYSTCTYNLEENEENVQWIRDELGAEVL 247 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V + + S A + R P + GFF LR+ Sbjct: 248 PVDIQEEWGISPSFAEDIPAC---RFFPHKTKGE--------GFFFALLRK 287 >gi|150008796|ref|YP_001303539.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides distasonis ATCC 8503] gi|149937220|gb|ABR43917.1| tRNA and rRNA cytosine-C5-methylase [Parabacteroides distasonis ATCC 8503] Length = 465 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + A + + + + + T A K A + S P F G Sbjct: 17 EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76 Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 ++VQ+AS+ Q + LDLCAAPGGK+ L G+ + + +V + R Sbjct: 77 YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N+ + +I D + FD ++ D PCS G R+ D D Sbjct: 137 VLAENIAKWGHPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ A R+++ + +KPGGI+++S C+ + ++ EE + ++ +P Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P GFF ALR+ Sbjct: 257 EWQITGALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290 >gi|329961546|ref|ZP_08299627.1| NOL1/NOP2/sun family protein [Bacteroides fluxus YIT 12057] gi|328531758|gb|EGF58587.1| NOL1/NOP2/sun family protein [Bacteroides fluxus YIT 12057] Length = 500 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 18/233 (7%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269 P F G ++VQ+A++ Q +++LDLCAAPGGK+ G+ + A Sbjct: 76 PLFHAGCYYVQEAASMFVEQALRRYTGDVPVTMLDLCAAPGGKSTHARSVLPKGSLLVAN 135 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328 +V + R + L NL + + D D+ FD +L D PCS G R+ P Sbjct: 136 EVIRNRSQILAENLTKWGHPGVVVTNNDPADFSSLTDFFDILLTDVPCSGEGMFRKDPVA 195 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + +++ QR++L +KP GI+++S C+ + +++EE V+ + Sbjct: 196 VSEWSPENVDICWQRQRRILSDIWPCLKPEGILIYSTCTYNTKENEENVRWM--RDEFGA 253 Query: 389 ELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E++PL SA W ++ R P + GFF LR+ Sbjct: 254 EVLPLEISADWNITGNLLSGEDFPVYRFLPHRTKGE--------GFFLAVLRK 298 >gi|282881637|ref|ZP_06290300.1| NOL1/NOP2/sun family protein [Prevotella timonensis CRIS 5C-B1] gi|281304396|gb|EFA96493.1| NOL1/NOP2/sun family protein [Prevotella timonensis CRIS 5C-B1] Length = 487 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 122/316 (38%), Gaps = 23/316 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPL--YIDLTVKFDIETWAHKLNAVMLPTGGI 203 ++PE F+ G + + + ++ L + + Sbjct: 1 MVLPEAFENYTRAMMGDDLFAHFAHSMQQDATAFVRLNHYKCPTAKMALAASKVPWYEYG 60 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI- 260 + + P F G+++VQ+ S+ Q+ + + +LD+CAAPGGK+ Sbjct: 61 YALDARPAFTFDPLFHAGLYYVQEQSSMFLAQVLRQFVQSPVRMLDMCAAPGGKSTLARL 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 G+ + + ++ R++ L N+ + + + F +L D PCS Sbjct: 121 ELPKGSTLVCNEPNRSRVQILNENIQKCGHPEVMVTNNYPKEIRQSGLKFQVILCDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R++ + + D++ K QR+++ + ++PGG++++S C+ + +++EE V Sbjct: 181 GEGMFRKNANAIDEWSVDNVNKCQQLQREIVAEAWQCLEPGGLLIYSTCTFNTKENEENV 240 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-------------GWIRITPDMLEKID 424 + + V + + ++ A + E R P +K Sbjct: 241 AWICQELGATTLKVKVEEDWNIMGNLLSAPATEDTTNKESKHSSAFNVYRFIPGYQDKPG 300 Query: 425 GVSSGMDGFFAVALRR 440 + +G F LR+ Sbjct: 301 NIYG--EGLFMAVLRK 314 >gi|222823945|ref|YP_002575519.1| NOL1/NOP2/sun family protein [Campylobacter lari RM2100] gi|222539167|gb|ACM64268.1| NOL1/NOP2/sun family protein [Campylobacter lari RM2100] Length = 297 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 22/293 (7%) Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + + + ++ + I + I L E K + Sbjct: 20 NAIFDSFKTQKDVNIFRNSLIVEDIILEEILKKEGVKFKKIDEFCYKIPQEF---KSKLS 76 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALD 270 S+ F EG +++Q+ S+ + + G SVLD+CAAPGGK A + + + + + Sbjct: 77 SMNAFNEGKFYIQNYSSYLCAKTLGVKAGESVLDMCAAPGGKSLNLANFMQNEGYLASCE 136 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDV 328 +SK R L+ ++ + DA FD +L+DAPCS+ Sbjct: 137 LSKARFFTLKKTMENYQVKIVKCFLKDARIIGKACPLKFDKILLDAPCSTFA----KMGF 192 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 ++T +I + A Q+KLL + +K GG +V+S C+ ++++E V++ LR+ + Sbjct: 193 EIQKNTKEIKQIANLQKKLLHSALLALKHGGELVYSTCTFLREENEAVLENALRNENFKL 252 Query: 389 ELVPLNSAYWKSI-DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EL+ + I + R+ PD DGFF +++ Sbjct: 253 ELLDFDLVNVDFICAKSDEFDLSFAKRVLPDDYA---------DGFFIAKVKK 296 >gi|156396524|ref|XP_001637443.1| predicted protein [Nematostella vectensis] gi|156224555|gb|EDO45380.1| predicted protein [Nematostella vectensis] Length = 464 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 78/444 (17%), Positives = 161/444 (36%), Gaps = 43/444 (9%) Query: 11 SSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++ +L V+ K+ ++ + +++ E+ + + A+V TL++ I+ + + Sbjct: 8 AAKVLEKVLHKKGTVKSLVIESEFANKKK----------LYALVCETLKYRQVIEDIFEQ 57 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L +K V V ++L+ + + + N+ + + ++ Sbjct: 58 --TKFLKCEKQLKHSFALVLVYELLF-----GHGLKCGGKFKQSIARNKSSLQSALAKVK 110 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 ++ + + N I ++ + + Sbjct: 111 IKAKVSRNKDLLPKSVQTAGTIPRYARINTLLTTADKVIKHFQEESYHLVPSTDKRLYVE 170 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 K+ A + + + + G +QD ++ +P + V+D C Sbjct: 171 GSKIFAQDPHIPEVLVFPPSTDLHDHTLYINGHILLQDKASCLPAHVISLPPGAHVIDAC 230 Query: 250 AAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 AAPG K++ + + +V + D+S RL ++ + + D P+ Sbjct: 231 AAPGNKSSHLAAKLNNNGRVFSFDISASRLAVMQKQMKKAGATCVVTEHKSFLDVDPRSS 290 Query: 307 FDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS----ACFQRKLLLQGISF--VK 356 ++VD CS +G I R ++ DD+ + A FQ +L SF VK Sbjct: 291 QYRNVEYIVVDPSCSGSGIISRLDGLVSDEQEDDLQQRLESLADFQLSVLTHAFSFPAVK 350 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 V +S CS+ Q++E+VV K L+ S EL W S + + E +R + Sbjct: 351 K---VAYSTCSIHSQENEDVVHKALKVSQGQFEL-AHALESWPSRGLPVFQGAEKCLRAS 406 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P S +GFF +R Sbjct: 407 P--------ESDHTNGFFVALFQR 422 >gi|307596216|ref|YP_003902533.1| Fmu (Sun) domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551417|gb|ADN51482.1| Fmu (Sun) domain protein [Vulcanisaeta distributa DSM 14429] Length = 406 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 100/241 (41%), Gaps = 25/241 (10%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTA 268 + + + G+++ Q A + N ++D+ AAPGGKT+ +I A V A Sbjct: 179 VREMREYELGLFYDQSLPAQWVGHVVDPKPNEVIIDMNAAPGGKTSHVIQLSGGKAIVHA 238 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIE------MDAFDYCPKKLFDAVLVDAPCSSTGTI 322 D S+ ++ ++ L+RL + +E +D D VL+D PC+ G Sbjct: 239 FDRSEGKVREMIEILNRLGMNGLYRVEVRDTRYLDIDRPDLIGSADKVLIDPPCTDMGV- 297 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 P + + D ++ + +QR+ + ++PGGI+++S C++ ++E + Sbjct: 298 --RPRLFDVKTMDLVMAMSNYQRQFIKVAWRLLRPGGILIYSTCTIPPLENENNIAYA-- 353 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + E++ ++ + +R P + GFF LR+ Sbjct: 354 -EGLGFEVIDISIPRASGGLIDKY--KNSVVRFYPHV--------HDTPGFFIAKLRKPS 402 Query: 443 Q 443 Q Sbjct: 403 Q 403 >gi|148676130|gb|EDL08077.1| NOL1/NOP2/Sun domain family 6, isoform CRA_b [Mus musculus] Length = 494 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F ++Q+ +++ + +LD+CAAPGGKT + Sbjct: 218 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 277 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 278 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 337 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 338 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 394 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + L+ E ++ + Sbjct: 395 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 451 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 452 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 483 >gi|148676129|gb|EDL08076.1| NOL1/NOP2/Sun domain family 6, isoform CRA_a [Mus musculus] Length = 455 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F ++Q+ +++ + +LD+CAAPGGKT + Sbjct: 179 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 238 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 239 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 298 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 299 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 355 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + L+ E ++ + Sbjct: 356 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 412 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 413 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 444 >gi|260099664|ref|NP_001159415.1| putative methyltransferase NSUN6 isoform c [Mus musculus] gi|123233116|emb|CAM20245.1| NOL1/NOP2/Sun domain family 6 [Mus musculus] Length = 425 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F ++Q+ +++ + +LD+CAAPGGKT + Sbjct: 149 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 208 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 209 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 268 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 269 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 325 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + L+ E ++ + Sbjct: 326 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 382 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 383 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 414 >gi|260099658|ref|NP_083226.3| putative methyltransferase NSUN6 isoform a [Mus musculus] gi|260099660|ref|NP_001159413.1| putative methyltransferase NSUN6 isoform a [Mus musculus] gi|119372268|sp|Q7TS68|NSUN6_MOUSE RecName: Full=Putative methyltransferase NSUN6; AltName: Full=NOL1/NOP2/Sun domain family member 6 gi|12855745|dbj|BAB30442.1| unnamed protein product [Mus musculus] gi|26346707|dbj|BAC37002.1| unnamed protein product [Mus musculus] gi|74208798|dbj|BAE21163.1| unnamed protein product [Mus musculus] gi|123233117|emb|CAM20246.1| NOL1/NOP2/Sun domain family 6 [Mus musculus] gi|148676131|gb|EDL08078.1| NOL1/NOP2/Sun domain family 6, isoform CRA_c [Mus musculus] Length = 476 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F ++Q+ +++ + +LD+CAAPGGKT + Sbjct: 200 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 260 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 320 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + L+ E ++ + Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 433 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 434 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465 >gi|19344072|gb|AAH25622.1| Nsun6 protein [Mus musculus] Length = 362 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F ++Q+ +++ + +LD+CAAPGGKT + Sbjct: 86 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDK 145 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 146 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 205 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 206 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 262 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + L+ E ++ + Sbjct: 263 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 319 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 320 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 351 >gi|321458018|gb|EFX69093.1| hypothetical protein DAPPUDRAFT_329423 [Daphnia pulex] Length = 725 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 110/325 (33%), Gaps = 72/325 (22%) Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 LT + W L + +K + G Q+ + IP + Sbjct: 102 CLTWYPENLAWQLSLTRKDIRKSEANVKLHNFLVSETEA---GNISRQETVSMIPPLVLD 158 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKV---------TALDVSKRRLEKLRCNLDRLHLY 289 + VLD+CAAPG KT+QL+ A D + +R L L RL Sbjct: 159 VQPHHKVLDMCAAPGSKTSQLVEMLHCDEGKAPEGLVIANDSNNKRCYLLTHQLKRLPSP 218 Query: 290 AEDIIEMDAFDYCPKK-----------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 I DA FD +L D PCS GT+R++ DV ++ + Sbjct: 219 NLIITNHDASLMPNFHIPTPGGGKDVLKFDRILCDVPCSGDGTLRKNLDVWMKWNSANGS 278 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---- 394 Q ++ +G + GG +V+S CSL+ ++E V+ ++L + +EL ++ Sbjct: 279 SLHGLQYRIARRGAEMLSVGGKMVYSTCSLNPMENEAVIHRLLVEAKGSLELEEVSGKLP 338 Query: 395 -------------------------------------SAYWKSIDMAMALSPEGWIRITP 417 S + + A E +RI P Sbjct: 339 GLKYVPGLSHWVVMSRVLTAYATPEEVPEAMKHILRGSLFPPKPEDADKFHLERCLRILP 398 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 GFF AL+++ Sbjct: 399 H--------QQNTGGFFVSALKKVA 415 >gi|163792970|ref|ZP_02186946.1| NOL1/NOP2/sun family protein [alpha proteobacterium BAL199] gi|159181616|gb|EDP66128.1| NOL1/NOP2/sun family protein [alpha proteobacterium BAL199] Length = 292 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 121/263 (46%), Gaps = 11/263 (4%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 L + + +I + A G +V +AS+ +P + +LD Sbjct: 30 EALTDLEPIGWCPDAFHIVGDKRAITASAPHAAGEVYVMNASSLVPALALDPQPDQDILD 89 Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD--RLHLYAEDIIEMDAFDYC 302 +C+APGGK A + V+ A++ D K RL KL+ ++ +++ A D Sbjct: 90 VCSAPGGKAAHIGALTVNQARLWVNDGIKSRLRKLQEVIELLNVNVTAVTEHPGQYLDKF 149 Query: 303 PKKLFDAVLVDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 ++ FD +L+DA CS G D L + + + + Q+++L+ ++PGGI+ Sbjct: 150 VEETFDRILLDAQCSGEGMADLSRSDALRFWTPERVEQMSRLQQRMLVASFKRLRPGGIL 209 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C++ +++E V ++R +P V + P++ A +++ L+ P + Sbjct: 210 VYSTCTVSPEENEAPVDHLVRHNPSAV-IEPIDLAIPEAVP---GLTRWEKRDYDPSLAN 265 Query: 422 KIDGVSSG-MDGFFAVALRRLIQ 443 + V+ M+ FF +R++ Q Sbjct: 266 ALRVVAGPFMEAFFVCRIRKVEQ 288 >gi|156085721|ref|XP_001610270.1| sun-family protein [Babesia bovis T2Bo] gi|154797522|gb|EDO06702.1| sun-family protein, putative [Babesia bovis] Length = 368 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 75/456 (16%), Positives = 146/456 (32%), Gaps = 112/456 (24%) Query: 4 GMNARLV-----SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 G+NA+ + + + + + + L + + ++ + + V R Sbjct: 3 GINAQRAKYLENALEVYTKLNTGVLPIDTFLKYYFKVNR---IAPGSRAWIAEHVYEVQR 59 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 + ++ + + Sbjct: 60 WKG----LIAHLSPKPVT------------------------------------------ 73 Query: 119 HFAKLVNSILRRVSREKIELLQ--RIAGISIIPEWFKERLENFYGKERVLAISDACISPL 176 + ++N+ L + + PE +R+ YG ++ L I Sbjct: 74 -WTGILNTYLLHPRWRYMTGHKGLPEYLRCSFPEPLFDRIARQYGNDKALEICQVLNEEP 132 Query: 177 YIDLTVKF---DIETWAHKLNAVMLPTGGIR------LKELPESIVSLPGFAEGVWWVQD 227 L V + L +P L +++ P + +G+ +QD Sbjct: 133 VTYLRVNTLRTSRDKAYRALLHKGVPVEKCADSPCGLLVTSKRALLESPEYHKGIVEIQD 192 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLD 284 S+ I T VLD CA GGK + + ++ DV++ L K+ Sbjct: 193 LSSQICGLKVETQPGEHVLDYCAGSGGKALVFGPKMENKGRIYLHDVNENLLNKVH---W 249 Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 R + A D V+VD PCS G RR+PD WT DDI Q Sbjct: 250 RSIMTAYY------------GKMDWVVVDVPCSGIGAYRRNPDRKWTFRIDDISNYTATQ 297 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 R ++ + F+KP G +V+ CS+ ++++E + + + + P Sbjct: 298 RTIVDNALLFLKPTGKLVYITCSIFEEENELQMNYMCKKHGLMHAQPP------------ 345 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +++ S GM+G++ L+R Sbjct: 346 -------TMQL---------PQSRGMNGYYIAILQR 365 >gi|253570666|ref|ZP_04848074.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 1_1_6] gi|251839615|gb|EES67698.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 1_1_6] Length = 492 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 120/311 (38%), Gaps = 20/311 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203 +P F + G E ++ A I + E L Sbjct: 1 MNLPASFIDYTRALLGNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSARFSFN 60 Query: 204 RLKELPES--------IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPG 253 ++ + P F G ++VQ+AS+ Q+ + + +LDLCAAPG Sbjct: 61 KVPWASDGYYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYVESPVVMLDLCAAPG 120 Query: 254 GKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 GK+ G+ + A +V + R + L NL + + D D+ FD Sbjct: 121 GKSTHARSVLPEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADFSALPSFFDV 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS G R+ P + +++ QR+++ +KPGGI+++S C+ + Sbjct: 181 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTYN 240 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ EE V + EL+PL +I + + R + + Sbjct: 241 SKEDEENVCWI--QQEFGAELLPLEVQDEWNITGNLLDGEDESQRSL--SVCHFLPHKTK 296 Query: 430 MDGFFAVALRR 440 +GFF ALR+ Sbjct: 297 GEGFFLAALRK 307 >gi|210617211|ref|ZP_03291455.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787] gi|210149412|gb|EEA80421.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787] Length = 177 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 73/177 (41%), Gaps = 12/177 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +N R + +L V R L + ++ L ++++ + + TL + Sbjct: 1 MTKSINERELVLGILLEVTRDGEHSHIALRNVL--NKYQYLDKKERAFITRVTEGTLERM 58 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D +++ + + K ++ ++R +V Q+ Y+D V + A + AV+ A + K + Sbjct: 59 IELDYIINQFSKVKVNKMKPVIRNIIRSAVYQMKYMDSVPNSAACNEAVKLAVK-KGFVN 117 Query: 120 FAKLVNSILRRVSREKIELLQRI--------AGISIIPEWFKERLENFYGKERVLAI 168 VN +LR + R ++ + +P W + Y +E V + Sbjct: 118 LKGFVNGLLRNIDRNLEQISYPDEKDLEQYLSVKYSMPTWILRQWLAAYDRESVECM 174 >gi|298385090|ref|ZP_06994649.1| NOL1/NOP2/sun family protein [Bacteroides sp. 1_1_14] gi|298262234|gb|EFI05099.1| NOL1/NOP2/sun family protein [Bacteroides sp. 1_1_14] Length = 492 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 28/315 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203 +P F + G E ++ A I + E L Sbjct: 1 MNLPASFIDYTRALLGNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSAHFSFN 60 Query: 204 RLKELPES--------IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPG 253 ++ + P F G ++VQ+AS+ Q+ + + +LDLCAAPG Sbjct: 61 KVPWASDGYYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYVESPVVMLDLCAAPG 120 Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 GK+ G+ + A +V + R + L NL + + D D+ FD Sbjct: 121 GKSTHARSVLSEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADFSALPSFFDV 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS G R+ P + +++ QR+++ +KPGGI+++S C+ + Sbjct: 181 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTYN 240 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWI---RITPDMLEKIDG 425 ++ EE V + + + + + + + + ++ +G + P + Sbjct: 241 SKEDEENVCWIQQEFGAELLPLEVRNEWNITGNLLDGEDESQGSLSVCHFLPHKTKGE-- 298 Query: 426 VSSGMDGFFAVALRR 440 GFF ALR+ Sbjct: 299 ------GFFLAALRK 307 >gi|29347452|ref|NP_810955.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides thetaiotaomicron VPI-5482] gi|29339352|gb|AAO77149.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides thetaiotaomicron VPI-5482] Length = 492 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 28/315 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNAVMLPTGGI 203 +P F + G E ++ A I + E L Sbjct: 1 MNLPTSFIDYTRALLGNEEYEKLAAALQQEPPVSIRINKLRMKEEGLSSLTDSSAHFSFN 60 Query: 204 RLKELPES--------IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPG 253 ++ + P F G ++VQ+AS+ Q+ + + +LDLCAAPG Sbjct: 61 KVPWASDGYYLDERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYVESPVVMLDLCAAPG 120 Query: 254 GKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 GK+ G+ + A +V + R + L NL + + D D+ FD Sbjct: 121 GKSTHARSVLSEGSLLVANEVIRNRSQVLAENLTKWGHPDVVVTNNDPADFSALPSFFDV 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS G R+ P + +++ QR+++ +KPGGI+++S C+ + Sbjct: 181 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWPCLKPGGILIYSTCTYN 240 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWI---RITPDMLEKIDG 425 ++ EE V + + + + + + + + ++ +G + P + Sbjct: 241 SKEDEENVCWIQQEFGAELLPLEVRNEWNITGNLLDGEDESQGSLSVCHFLPHKTKGE-- 298 Query: 426 VSSGMDGFFAVALRR 440 GFF ALR+ Sbjct: 299 ------GFFLAALRK 307 >gi|319903071|ref|YP_004162799.1| Fmu (Sun) domain protein [Bacteroides helcogenes P 36-108] gi|319418102|gb|ADV45213.1| Fmu (Sun) domain protein [Bacteroides helcogenes P 36-108] Length = 481 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 18/235 (7%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269 P F G ++VQ+A++ Q + +LDLCAAPGGK+ G+ + A Sbjct: 76 PLFHAGCYYVQEAASMFVEQALRQYVSDSPVVMLDLCAAPGGKSTHTRSLLPEGSLLVAN 135 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328 +V + R + L NL + + D D+ P K FD +L D PCS G R+ P Sbjct: 136 EVIRNRSQVLAENLIKWGHPDVVVTNNDPADFAPLKDFFDVILADVPCSGEGMFRKDPVA 195 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + +++ QR+++ +KPGGI+++S C+ + +++EE ++ + + Sbjct: 196 VSEWSLENVEICWQRQRRIISDIWPCLKPGGILLYSTCTYNVKENEENIRWM--RDKLGA 253 Query: 389 ELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 E++PL SA W +A R P + GFF +++ Sbjct: 254 EVLPLETSADWNITGNLLASEEFPVYRFLPHKTKGE--------GFFLAVVQKKA 300 >gi|119590099|gb|EAW69693.1| hCG39703, isoform CRA_b [Homo sapiens] Length = 308 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 110/271 (40%), Gaps = 23/271 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D+ K + + + + P + G +QD ++ +P L Sbjct: 12 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 71 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 72 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 131 Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF- 354 P +L+D CS +G R + T + A FQ++ L ++F Sbjct: 132 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP 191 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ +V+S CSL ++++E+VV+ L+ +P L P A W ++ E + Sbjct: 192 SLQ---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 247 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 R +P+ GFF + R+ P Sbjct: 248 RASPETTLSS--------GFFVAVIERVEVP 270 >gi|66362754|ref|XP_628343.1| Ncl1p/MJ0026/YebU-like. SUN family RNA methylase [Cryptosporidium parvum Iowa II] gi|46229784|gb|EAK90602.1| Ncl1p/MJ0026/YebU-like. SUN family RNA methylase [Cryptosporidium parvum Iowa II] Length = 713 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 121/352 (34%), Gaps = 66/352 (18%) Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210 L F + + L+ + + + + +L +L Sbjct: 111 HPLHSLLEFLLNAETEKLYNNNAIFNLKRLSKNCKL--YLITEYSRKMLKKESQLAKLHS 168 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------- 259 IVS F G Q+ + +P VLDLC+APG K+ Q+ Sbjct: 169 FIVSQDEF--GTLSSQELVSMLPCICLDPKPGHFVLDLCSAPGSKSTQILDMILSSRDDQ 226 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKL 306 + DVS +RL+ L L R+ I +DA + Sbjct: 227 LGIACKKGLLICNDVSSKRLDTLSSRLSRIPSPNVLITCIDASFFPTFKPSKTTITSPFQ 286 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +LVD+ CS GT+R++PD+ + + Q LL + +K GG +V+S C Sbjct: 287 FDRILVDSICSGDGTLRKNPDIWTIWKPEKALSLHKKQVSLLSRAFKLLKNGGKLVYSTC 346 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--------WKSIDMAMALSPEGWIRI--- 415 SL+ ++E V+ +LR P + P N ++ + L + +++ Sbjct: 347 SLNPIENEAVISTLLRKFPDAKLISPTNLDEREFEISKGLRTWGVHFELKEQNKLQLFDT 406 Query: 416 -----------------TPDM----------LEKIDGVSSGMDGFFAVALRR 440 PD ++ + GFF +++ Sbjct: 407 LDEVPDTPFKEKLTESMFPDKEWYESDNFMRCFRVLPHRNDTGGFFFAVVQK 458 >gi|170048588|ref|XP_001853367.1| tRNA methyltransferase [Culex quinquefasciatus] gi|167870650|gb|EDS34033.1| tRNA methyltransferase [Culex quinquefasciatus] Length = 685 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 101/282 (35%), Gaps = 69/282 (24%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---------SGAKVTALDVSK 273 Q+A + IP + + VLD+CAAPG KTAQLI V A D+ Sbjct: 161 ISRQEAVSMIPPLVLSVEPHHKVLDMCAAPGSKTAQLIEALHAGGDALPTGFVMANDIDN 220 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTGTI 322 R L RL + ++ D+ + +D +L D PCS GT+ Sbjct: 221 NRCYMLVHQAKRLASASCLVVNADSSVFPSLKVKNEAGELVPLKYDRILCDVPCSGDGTL 280 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+ +L Sbjct: 281 RKNPDIWTKWNMGHACNLHGLQYRIVKRGAELLEVGGKLVYSTCSLNPIENEAVLHHLLA 340 Query: 383 SSPIPVELVPLNSA-----------------------------------------YWKSI 401 + +E+V + + + Sbjct: 341 ETGDAMEIVDASHLVPTLKHSPGMTYWEPATKDMKFYKSFAEVPENYRTVIRPLMFPPAP 400 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + + IR+ P GFF L + + Sbjct: 401 EDVAKFNLDRCIRVLPH--------QQNTGGFFIALLEKKKK 434 >gi|41615084|ref|NP_963582.1| hypothetical protein NEQ295 [Nanoarchaeum equitans Kin4-M] gi|40068808|gb|AAR39143.1| NEQ295 [Nanoarchaeum equitans Kin4-M] Length = 290 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 15/244 (6%) Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TA 257 ++K+ P + +LP + G+ ++Q+ S+++PV +LD+ AAPGGK Sbjct: 56 YFYKIKKAPFHLQALPEYILGLIYIQNPSSALPVFALSPRKKDIILDMAAAPGGKSSLIQ 115 Query: 258 QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 QL + + + +++ R +K+R DRL++ A I DA K+ F +L+DAPCS Sbjct: 116 QLTNNQSILYSVEKDPFRAKKMRFIFDRLNVRAVII-NEDALKLPFKEEFKKILLDAPCS 174 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 + I + ++ +D + Q++L+ + +KP GI+V+S C+L+ ++E V+ Sbjct: 175 ANPYIDK---TFISKTIEDFINRQTIQKQLIKKAYEMLKPNGILVYSTCTLEPLENEFVI 231 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAV 436 + L V S + + RI P + + FF Sbjct: 232 EYALSLGFKIVNANLFGEPALTSFENHEFPKEMQYCKRIYPHIHYGFEP-------FFYC 284 Query: 437 ALRR 440 L++ Sbjct: 285 VLKK 288 >gi|198426740|ref|XP_002131278.1| PREDICTED: similar to predicted protein [Ciona intestinalis] Length = 418 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 73/450 (16%), Positives = 161/450 (35%), Gaps = 48/450 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 M + +L+ V + S+ + ++ + + A+V TL++ + Sbjct: 1 MALYKSAEDVLNQVEAYKSSVKKAVFSTKFRNPKQ----------LCALVMETLKYKAVL 50 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + VL + K + + + D + + K K + Sbjct: 51 EDVLQQ--TKLIQNTKGISRNIALPLLY-----DFLIGKGIRCGGKFKKLIKTRKSAINA 103 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + ++ + +P + L + + + + Sbjct: 104 AFARIKLKKKVSKTEDLVEKSNFTLP----KYLRVNTLLTTTTKVMETLNKDGFTRVD-- 157 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 + K + + + + G QD S+ +P + N Sbjct: 158 CSVNEIVEKQFSSDPDIPNLLVFHFSTDFHDHGLYKLGHLIFQDKSSCMPAFVLNPSPNS 217 Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 V+D CAAPG KT+ ++ + K+ A+D S R+E ++ L + + ++I D Sbjct: 218 HVIDACAAPGNKTSHLSAIMNNTGKLFAIDRSSERIEVMKKQLKKASVKNCEVINSDFLI 277 Query: 301 YCP----KKLFDAVLVDAPCSSTGTIRR---HPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 P K + +LVD C+ +G I R H + ++ + + + FQ K+L +S Sbjct: 278 LKPTDEKFKQVEYILVDPSCTGSGIISRQLEHTEEKDSKCSKRLESLSKFQLKVLNHALS 337 Query: 354 F--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 F VK VV+S CS+ ++++E +V+ + + +L + + ++ + + E Sbjct: 338 FPNVK---RVVYSTCSIHEEENELIVKLAVEQNSN-FDLKKVLPKWHNRGLISDSFNAEK 393 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R P++ +GFF + Sbjct: 394 CVRCDPNVDF--------TNGFFVALFEKK 415 >gi|167758121|ref|ZP_02430248.1| hypothetical protein CLOSCI_00459 [Clostridium scindens ATCC 35704] gi|167664018|gb|EDS08148.1| hypothetical protein CLOSCI_00459 [Clostridium scindens ATCC 35704] Length = 479 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 25/313 (7%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH-------KLNAV 196 I +P F+E++ +E I P Y L V T ++ + Sbjct: 19 WIMNLPSAFEEKMRGLLQEEFDEYIDCY-EEPRYYGLRVNTAKITVEEFERICPFEITPI 77 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 G + P + G++++Q+ SA P VLD+CAAPGGK Sbjct: 78 PWIENGFYYDGENVAPAKHPYYFAGLYYLQEPSAMTPASRLPVEPGDKVLDVCAAPGGKA 137 Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVL 311 + + + A D+S R + L N++ + + E + + FD +L Sbjct: 138 TELGARLKGQGMLVANDISSSRAKGLLKNMEVFGIGNMLVLSEEPGRLEQYFPEYFDKIL 197 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 +DAPCS G R+ ++ + + Q+ ++LQ +KPGG++++S C+ D + Sbjct: 198 IDAPCSGEGMFRKDKKMVKAWEEHGPEFFSNIQKNIILQAARMLKPGGMMLYSTCTFDGR 257 Query: 372 DSEEVVQKVLRSSPIP--VELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVS 427 ++E +++ + S P +++ P + + PE +RI P ++ Sbjct: 258 ENERIIEHLKESCPEFQILKISPYSGFCQGMPQCSENNDPELAKTVRIFPHRMKGE---- 313 Query: 428 SGMDGFFAVALRR 440 G + LR+ Sbjct: 314 ----GHYLALLRK 322 >gi|167539930|ref|XP_001741422.1| hypothetical protein [Entamoeba dispar SAW760] gi|165894124|gb|EDR22208.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 511 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 35/246 (14%) Query: 217 GFAEGVWWVQDASASIPV----QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272 + Q+ + P L + +VLD+CAAPG KT+QL+ + VTA DV Sbjct: 91 AVERNYCYRQELCSMFPPLVIESLINKYHINTVLDICAAPGSKTSQLVENKILVTANDVD 150 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 +R++ L L+ +D K +D +L DAPCS GT+R+ + + Sbjct: 151 PKRVQILAHRLNCWGNVNILNCSIDQI----KGKYDCILCDAPCSGDGTLRKSSNPWFKW 206 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++ Q K++ + + + GI+++S CS++ + E V+ +L+ +EL+ Sbjct: 207 KLTTSFENHRIQLKIVRESLKHLNENGIIIYSTCSMNPIEDEAVIHSILKEFQGSIELID 266 Query: 393 LNSAYWKSI-------------------DMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 ++S E +RI P GF Sbjct: 267 IHSIIPNGRNGVSIWKKYDTINCPVTSYPPLEEYHLERCVRIFPQDY--------NSGGF 318 Query: 434 FAVALR 439 F ALR Sbjct: 319 FIAALR 324 >gi|152990425|ref|YP_001356147.1| tRNA/rRNA cytosine-C5-methylase [Nitratiruptor sp. SB155-2] gi|151422286|dbj|BAF69790.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family [Nitratiruptor sp. SB155-2] Length = 298 Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 109/303 (35%), Gaps = 21/303 (6%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 +++ ++ +I + + + + + + R E Sbjct: 1 MNQKIFEERIRKIEPSILELLHTKKSFSFRINHHRASTQEAIELLEQEGYHPRKVEWAND 60 Query: 212 IVSLP-----------GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + LP + + + ++Q+ S+ VLDL AAPGGK+ Sbjct: 61 VFELPIEHRKSIVKSSAYTQNMIYIQNLSSIFSAYSIDIDPEDWVLDLAAAPGGKSLIFS 120 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSS 318 KV+A++ K R +++ N D FD V +DAPCSS Sbjct: 121 ERAKKVSAVEPDKGRFFRMKRNFKEHMAKNIQTYNKDGRFIYKSCPGWFDKVFLDAPCSS 180 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 I + + K A Q++L++ +KPGG +++S C+ +++E VV Sbjct: 181 EAHIDGEVT---WWNVRRVRKFAKLQKELIVSAYESLKPGGQMIYSTCTFAPEENEAVVD 237 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG-MDGFFAVA 437 +++ P + ++ E PD+ + + + G GFF Sbjct: 238 FLIKKYPEAQVMEVEVPFSNWMRGLSEWEEKE----FHPDVAKTVRILPKGAYSGFFMAK 293 Query: 438 LRR 440 + + Sbjct: 294 IMK 296 >gi|306833544|ref|ZP_07466671.1| NOL1/NOP2/sun family protein [Streptococcus bovis ATCC 700338] gi|304424314|gb|EFM27453.1| NOL1/NOP2/sun family protein [Streptococcus bovis ATCC 700338] Length = 436 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 25/244 (10%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 P G+ + Q+ +A + Q+ N+ VLDL AAPGGK+ + + + + Sbjct: 63 GKSPEHVSGLVYSQEPAAQMVAQVAAPQENMRVLDLAAAPGGKSTHLLSYMNNTGVLVSN 122 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPD 327 ++S +R + L N++R + + K FD ++ D PCS G R+ Sbjct: 123 EISSKRSKVLVENIERFGARNVVVTNESSQKLSKVFKDYFDLIVFDGPCSGEGMFRKDSS 182 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 D + A Q+++L + + + GG +V+S C+ +++E VV+ +L Sbjct: 183 ATQYWHEDYPAECAVLQKEILEEAMKMLAIGGTLVYSTCTWSPEENEGVVKWLLDKY-DY 241 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-------R 440 +ELV + + M + F LR R Sbjct: 242 LELVDIEKINGMVEGIDMPQVARMCS----HHFKGEGQ--------FVAKLRDTRMPEAR 289 Query: 441 LIQP 444 ++P Sbjct: 290 SVKP 293 >gi|291288877|ref|YP_003505693.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290886037|gb|ADD69737.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 441 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 17/264 (6%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 ++ +L+ +++ + + GF G +++ + S+ L Sbjct: 46 ELAEMGVELSEAEGLPKVYKVESGEDKLTGSIGFQTGGFYIMNPSSVFAADTLCRLMPDY 105 Query: 245 VL--DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 D+ +APGGKT + + + A + S +R++ L+ N+++ Y+ I D Sbjct: 106 PYILDVASAPGGKTCAIADLLGNRCAIIANEPSGKRMKSLQFNIEKYGAYSVRTIGKDGR 165 Query: 300 --DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + FD +L+DAPCS+ I R+ V + + + A Q+++ +K Sbjct: 166 NLHKTFDRFFDGILLDAPCSNENKIGRNKTVNSEWCQELVERMAKLQKEIASSAFETLKE 225 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG++V+S C+ +++EEV++ +L + ELV +N +R P Sbjct: 226 GGVMVYSTCTFSVEENEEVIRHILDNF--DCELVDINRGEHTGGLSGDGSIDPYVVRYMP 283 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + DGFF A+RR Sbjct: 284 H--------TDIYDGFFISAVRRK 299 >gi|149412200|ref|XP_001509484.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus] Length = 466 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 32/263 (12%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F G ++Q+ +++ + G +LD+CAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPGYLFLQNLPSAVASHVLGPQPGERILDMCAAPGGKTTHIAALMEDR 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++EK++ L L D P + FD Sbjct: 260 GEVIALDKIANKVEKIKQTAKLLQLNCIKAFCYDGTKALAQGKTEAGRGEPPFPPETFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T ++ QR+LL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGLG---QRPNMACTWTLKEVTSYPPLQRRLLAVAVELLKPGGVLVYSTCTVT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---TPDMLEKIDGV 426 ++EE V L + P ++L+P LS E R+ P + + Sbjct: 377 LAENEEQVAWALDTFPC-LQLLPQEPHLGDEGMAGAGLSQEQRHRLQRFDPAAVPAEGPI 435 Query: 427 S---SGMDGFFAVAL--RRLIQP 444 GFF + RR P Sbjct: 436 RRANQDCIGFFIASFAKRRTASP 458 >gi|296206262|ref|XP_002750130.1| PREDICTED: putative methyltransferase NSUN6 [Callithrix jacchus] Length = 468 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 103/269 (38%), Gaps = 42/269 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-------------AFDYCPKKLFDAV 310 +V ALD ++EK++ N L L + D + FD + Sbjct: 260 GEVIALDKIFNKVEKIQQNASLLGLNSIRAFCFDGTKAVKLDMVDTEEEPPFLPETFDRI 319 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS G + P++ T ++ QRKL + +KPGG++V+S C++ Sbjct: 320 LLDAPCSGMG---QRPNMACTWSLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTITL 376 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDMLE 421 ++EE V L P ++L P LS E ++ PD Sbjct: 377 AENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDV 435 Query: 422 KIDGVSSGMD----------GFFAVALRR 440 + D GFF + Sbjct: 436 DSLRETRREDMLRLANKDSIGFFIAKFVK 464 >gi|291534144|emb|CBL07257.1| Transcription termination factor [Megamonas hypermegale ART12/1] Length = 116 Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MNAR V+ ++L+ V ++ L + LS +D+ + +V T++ + Sbjct: 1 MNAREVALNILNEVYTQQAYANISLSRHLQKNQ---LSDQDRRFITELVYGTVKAGDTLL 57 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +L + L + + ++ +LR+ + QI+++D + + A + AV AK Sbjct: 58 WILKKFVNRPLNKIEPTIINILRLGIYQIVFMDKIPESAACNEAVNLAK 106 >gi|262383712|ref|ZP_06076848.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_33B] gi|262294610|gb|EEY82542.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_33B] Length = 465 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 18/285 (6%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E + A + + + + + T A K A + S P F G Sbjct: 17 EEFDRLEAALSADVPVSIRINPMKGTPAPKAGAPVAWCESGFYLPERLSFTFDPLFHAGA 76 Query: 223 WWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 ++VQ+AS+ Q + LDLCAAPGGK+ L G+ + + +V + R Sbjct: 77 YYVQEASSMFLEQAIKAYVKEPVRCLDLCAAPGGKSTHLASLLPDGSLLVSNEVIRSRSY 136 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N+ + +I D + FD ++ D PCS G R+ D D Sbjct: 137 VLAENIAKWGRPDTIVINNDPEEIGEALPHLFDVIVTDVPCSGEGMFRKDTDSTGEWSVD 196 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ A R+++ + +KPGGI+++S C+ + ++ EE + ++ +P Sbjct: 197 NVRLCASRGRRIIHDIWNALKPGGILIYSTCTYNTEEDEENIHYIIEELGAEALPIPTQE 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P GFF ALR+ Sbjct: 257 EWQITDALRF---EHPVYRFFPHKTRGE--------GFFLAALRK 290 >gi|333029203|ref|ZP_08457264.1| Fmu (Sun) domain protein [Bacteroides coprosuis DSM 18011] gi|332739800|gb|EGJ70282.1| Fmu (Sun) domain protein [Bacteroides coprosuis DSM 18011] Length = 478 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 122/307 (39%), Gaps = 22/307 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET-----WAHKLNAVMLPT 200 +P F + ++ G +S+A P I + + + + + + Sbjct: 1 MNLPPQFITQTQSLLGDVEWQKLSEALEEPQPISIRLNQNKIDKYGICLSQDIFESIPWC 60 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG---TLNNLSVLDLCAAPGGKTA 257 + P F G ++VQ+AS+ Q+ N+ LDLCAAPGGKT Sbjct: 61 ESGFYLSARPTFTYDPLFHSGAYYVQEASSMFIEQIVKQHLPHKNIVALDLCAAPGGKTT 120 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVD 313 L S + + A ++ ++R + L NL + + + D+ +FD ++ D Sbjct: 121 LLRSLLPSNSLLIANEIVRKRAQILSENLLKWGHPDVIVTNNSSEDFSEYTNMFDLIVAD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS G R+ + +++ QR ++ +KPGG++++S C+ + +++ Sbjct: 181 VPCSGEGMFRKDEGAIAEWSVENVDVCWKRQRDIISSIWHSLKPGGLLIYSTCTYNTKEN 240 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE V +L + V + ++ + + R P + GF Sbjct: 241 EENVAWILDTYGAQSLPVQIEDSWNITRSLYSKTL--NTYRFMPHKTKGE--------GF 290 Query: 434 FAVALRR 440 F +++ Sbjct: 291 FVSIIQK 297 >gi|67478419|ref|XP_654608.1| tRNA (cytosine-5-)-methyltransferase [Entamoeba histolytica HM-1:IMSS] gi|56471669|gb|EAL49221.1| tRNA (cytosine-5-)-methyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 511 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 35/246 (14%) Query: 217 GFAEGVWWVQDASASIPV----QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVS 272 + Q+ + P L + +VLD+CAAPG KT+QL+ + VTA D+ Sbjct: 91 AVERNYCYRQELCSMFPPLVIESLINKYHINTVLDICAAPGSKTSQLVENNIFVTANDID 150 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 +R++ L L+ +D K +D +L DAPCS GT+R+ + + Sbjct: 151 PKRVQILAHRLNCWGNINILNCSIDQI----KGKYDCILCDAPCSGDGTLRKSSNPWFKW 206 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++ Q K++ + + + GI+++S CS++ + E VV +L+ ++L+ Sbjct: 207 KLTTSFENHRIQLKIIRESLKRLNENGIIIYSTCSMNPIEDEAVVHSILKEFQGNIQLID 266 Query: 393 LNSAYWKSI-------------------DMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 ++ + E +RI P GF Sbjct: 267 IHHIIPNGRNGVSVWKKYDTINCPVTCYPPIEDYNLERCVRILPQDY--------NSGGF 318 Query: 434 FAVALR 439 F ALR Sbjct: 319 FIAALR 324 >gi|326429758|gb|EGD75328.1| Nsun6 protein [Salpingoeca sp. ATCC 50818] Length = 477 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 41/260 (15%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 G + +Q+ + + + V+D+CAAPGGKTA + + + ++TA + S Sbjct: 223 GHLDRSLVLQNLPSCVASHVLAPQPGEHVVDMCAAPGGKTAHIAALMNNTGRITAYERST 282 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------------------------PK 304 +R L L+ + + + +MDA C Sbjct: 283 KRCAALVQWLETVGVTCCSVFKMDARKCCLQALPQSSPSPSSSSLSSSSSQAVEKKKVQA 342 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 D VL+DAPC+ G + D++++ FQ+KL ++ +KPGG +V+S Sbjct: 343 GSVDRVLLDAPCTGLGQRPKFEHATPL---TDVIEAPSFQKKLFRTAVALLKPGGTLVYS 399 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS + +++E VV L P +E+ ++ LS E R+ Sbjct: 400 TCSFNPEENEGVVAWALAEFPHDIEIAQQVPYIGEAGVQYEGLSEEARQRV----QRFTP 455 Query: 425 GVSSGMDGFFAVALRRLIQP 444 + GFF + +P Sbjct: 456 SSTCDTIGFFIAKFIK--KP 473 >gi|94987286|ref|YP_595219.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis PHE/MN1-00] gi|94731535|emb|CAJ54898.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis PHE/MN1-00] Length = 423 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIV 261 + P + G+ ++QD S+ +PV +LD+CA+PG KT QL+ Sbjct: 46 IIYEPFPLGKSLAAFFGLIYIQDRSSMLPVLALQANVGDIILDMCASPGSKTTLLSQLVG 105 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTG 320 + + D +K RL LR NL RL+ + A P + +L+D PCS G Sbjct: 106 NTGLIVGNDPTKSRLLTLRNNLGRLNCFNTVTCSWPAEKLPMPDATWGKILLDPPCSGWG 165 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 TI+++P V + I Q+KLL + + PGG +V+S C+ + ++E +Q Sbjct: 166 TIKKNPQVTKIWQGERINPLIILQKKLLTEATRLLIPGGKIVYSTCTTNIDENEAQIQFA 225 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + ++L+PL S+ ++ S EG IR+ + GFF L++ Sbjct: 226 I--TNLGLKLIPLELPLGFSVIKPISPSYEGVIRL---------PNTHDSQGFFIACLQK 274 Query: 441 LIQ 443 + Sbjct: 275 PGK 277 >gi|328868257|gb|EGG16635.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum] Length = 793 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 114/346 (32%), Gaps = 68/346 (19%) Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 ++ I D + +D V + + + + + + L F + + Sbjct: 127 QLHNIIDQLPEKMIVDGDVVEPPKPLSWYPDELAWHSTLTKRSFRKND--QLEAFHKFLM 184 Query: 224 WVQDAS--------ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------------LIVS 262 + + IP + VLD+CAAPG KT Q + Sbjct: 185 HHNNEGNLTRQEAVSMIPPIFLDVEPHHLVLDMCAAPGSKTTQIIEALHANRSNSNTTIP 244 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP------------KKLFDAV 310 + A D +R L RL I +A + LFD + Sbjct: 245 EGMIIANDADVKRCYMLVHQTARLGSPTIVITNHEAQIFPLLYLQKEGETERRPMLFDRI 304 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT+R++PD+ D Q + + + +K GG +V+S CSL+ Sbjct: 305 LADVPCSGDGTLRKNPDLWKRWKARDGAGLHRLQSHIAYRAANLLKVGGRMVYSTCSLNP 364 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALSPE-------GW 412 ++E V+ +++ V +V +++ Y W ID + + Sbjct: 365 IENEAVIMELVNRCQGAVRIVDVSAQYPTLIRANGLHTWPVIDKDREIYQDFSQVPETKK 424 Query: 413 IRITPD---------------MLEKIDGVSSGMDGFFAVALRRLIQ 443 I P ++ GFF L ++ + Sbjct: 425 KTIFPSFFPPTEEQAQKAGLKHCMRVYPHMQDTGGFFITVLEKVAE 470 >gi|289422676|ref|ZP_06424516.1| tRNA and rRNA cytosine-C5-methylase [Peptostreptococcus anaerobius 653-L] gi|289156855|gb|EFD05480.1| tRNA and rRNA cytosine-C5-methylase [Peptostreptococcus anaerobius 653-L] Length = 472 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 46/298 (15%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 F E+ + + + + + D W+ + + + Sbjct: 31 FDEKKTSAIRINTLKMTKERFEDLAMFSIDIDRDRIEWSDE----------SYYIDEETN 80 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTA 268 P G +++Q+ SA V + +LD+CAAPGGK+ ++ + + Sbjct: 81 PGKNPLHDAGAYYLQEPSAISVVGKSNIVPGERILDMCAAPGGKSTYILSKLGGRGLLVS 140 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHP 326 +++K+R+ L NL+R I D+ K FD + +DAPCS G R+ Sbjct: 141 NEINKQRVTSLGDNLERFGARNAIITNEDSKRLLTFFKGFFDKIYIDAPCSGQGMFRKDA 200 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + + + Q+ L+ + ++PGG +++S C+ K ++E+++ L + Sbjct: 201 YAIEDWSIAKVKECSNIQKDLIRDAYAMLRPGGSLIYSTCTFTKIENEDIINDFLGEYKM 260 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 S + RI P + G F R+ +P Sbjct: 261 A--------------------SLDSMERIWPHIDRGE--------GHFCA---RISKP 287 >gi|57242344|ref|ZP_00370283.1| proliferating-cell nucleolar antigen P120, putative [Campylobacter upsaliensis RM3195] gi|57017024|gb|EAL53806.1| proliferating-cell nucleolar antigen P120, putative [Campylobacter upsaliensis RM3195] Length = 288 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 125/298 (41%), Gaps = 24/298 (8%) Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDI--ETWAHKLNAVMLPTGGIRLKELPES- 211 +L Y + + + ++ S + + + F E ++L + L ++ Sbjct: 4 KLAQIYTQNELEILKESFKSAKNVCVFLNFLKTNEAMINELFKDLEFQRLNSFCYLFKAQ 63 Query: 212 ----IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264 + + F EG +++Q+ S+ + + G N S+LD+CAAPGGK+ + + A Sbjct: 64 DKSILSKMKAFNEGHFYIQNYSSYLCARNLGVKPNESILDMCAAPGGKSINLANFMQNKA 123 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 + ++ +K R L+ NL + A + + + FD +L+DAPCS+ Sbjct: 124 YLACVEANKERFFTLQKNLKNYGVNAKIFLKDAKSIGRLCPLKFDKILLDAPCSTLAKTG 183 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + +I A Q+KLL + +K GG +V+S C+ ++++EEV++ L+S Sbjct: 184 FENV----KSPKEIKALALLQKKLLHSALKALKHGGELVYSTCTFLREENEEVLENALKS 239 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + RI P DGFF +R++ Sbjct: 240 EFELEFLELDLEGVIAKEAKSEFGELKKARRIMPC---------ENYDGFFIAKMRKI 288 >gi|210632641|ref|ZP_03297483.1| hypothetical protein COLSTE_01386 [Collinsella stercoris DSM 13279] gi|210159418|gb|EEA90389.1| hypothetical protein COLSTE_01386 [Collinsella stercoris DSM 13279] Length = 330 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 29/290 (10%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP-ESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 V D++ V + + + + L + +G ++Q S+ +P L Sbjct: 41 VCRDLDARDIVYERVPWYDDALVVCDARERDLWELDIYRKGHIYLQSLSSMLPPLLLEPR 100 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 +LD+CAAPGGKTAQ+ + A +TA ++S R EKL NLD+L +++ D Sbjct: 101 AGADILDMCAAPGGKTAQIAALTGNAAHLTACEMSAPRAEKLAYNLDKLDAANVNVMRTD 160 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 A FD +L+DAPC+ TGT R + K QR LL + ++ +K Sbjct: 161 ARRLDEFFSFDQILLDAPCTGTGTYRAGDERAEKRMTPQLLAKVTKSQRALLDRALTVLK 220 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--------------PVELVPLNSAYWKSID 402 PGG +V+S CS+ +++++ V+ L+ + P K Sbjct: 221 PGGTLVYSTCSVLAEENDDQVRAALKRHRDCEVAPILLDAPTEMEADDQPERPRAAKDEV 280 Query: 403 MAMALSPEGW--IRITPDMLEKIDGVSSGM-------DGFFAVALRRLIQ 443 L+ G +R P + + + +GF+ +R+ + Sbjct: 281 RPAILANAGSGPLRC-PALERECALAGTLTVAPTRLFEGFYVAVIRKKAR 329 >gi|71665951|ref|XP_819940.1| methyltransferase [Trypanosoma cruzi strain CL Brener] gi|70885263|gb|EAN98089.1| methyltransferase, putative [Trypanosoma cruzi] Length = 832 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 78/424 (18%), Positives = 145/424 (34%), Gaps = 58/424 (13%) Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQIL--------YLDVADYAVVDLAVEQAKRDKENRH 119 S+L + + L ++AQ++ +V +D K + R Sbjct: 87 APRSQSTLEKIDVTE---LCFAIAQVIAPVNVHERRRNVGSTEPLDENAPLIKYYSKGRF 143 Query: 120 FA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + VN+ ++ ++ + ER E + Sbjct: 144 ASLLECVNTEDAQIEWQRFIACISSPLPMTLRVHRNERALKHIADE-------FLLHDPM 196 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + V + + E I A Q+A + +PV + Sbjct: 197 LREVVHSVSPLLPPSIGLYGCSHAVYHTEPRVEYICRT-LHAASAVSFQEAVSVLPVMVA 255 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAK------------VTALDVSK-RRLEKLRCNLD 284 + +VLD+CAAPG KT ++ + + + + + L L Sbjct: 256 DIHPHHAVLDMCAAPGSKTLHVLDEMLQYGWSTSSVSQGVFFVNEKDRIKATQILPARLK 315 Query: 285 RLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R H DA + +K FD ++ D PCS GT+R+ P + + Sbjct: 316 RFHAPNVICTRCDASQWPRLFYSFERGSSFAEKRFDRIICDVPCSGDGTVRKEPALASSW 375 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + Q+ LL +G+ +K GGI+V+S CS++ ++ EEVV L VEL+ Sbjct: 376 SPGYVKSLVPTQKALLRRGLDLLKEGGILVYSTCSMNPKEDEEVVCAGLELFGDTVELLD 435 Query: 393 LNSAYWKSIDMAMALS-------PEGWIRITPDMLE-----KIDGVSSGMDGFFAVALRR 440 +N+ + + ++ + I P + ++ GFF A R+ Sbjct: 436 VNAILREKGALLHSVGGILSPNVDQLQIATLPLTFDGRKVLRVLPHRDDTGGFFVAAFRK 495 Query: 441 LIQP 444 P Sbjct: 496 RSLP 499 >gi|300173481|ref|YP_003772647.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc gasicomitatum LMG 18811] gi|299887860|emb|CBL91828.1| ribosomal RNA small subunit methyltransferase F [Leuconostoc gasicomitatum LMG 18811] Length = 485 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 96/255 (37%), Gaps = 41/255 (16%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + Q+ SA + +LDL AAPGGKT + + + ++ R + L Sbjct: 78 VYSQEPSAQFVGETVRPEPGERILDLAAAPGGKTTHLAAFMQQKGLLWSNEIFLNRAKIL 137 Query: 280 RCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 N++R+ L + FD +L+DAPCS G R++ + D Sbjct: 138 SENVERMGLQNSVVSSHTPAELSVKLPQYFDKILLDAPCSGEGMFRKNITAIKQWHKDFP 197 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSA 396 + A QR++L + + ++PGG +++S C+ ++ E+++ ++ P ++ + Sbjct: 198 QELAELQREILHEAVKMLRPGGQIIYSTCTFSPEEDEQMIAWLMSEYPEFTLKAINKPQD 257 Query: 397 YWKSIDMAMALSPE------------------GWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + S + R+ P L +G F L Sbjct: 258 TYISDGQPAWADKQFTDGQVDQSKTIDQEVLKKTARLWPQRL--------NGEGHFVAKL 309 Query: 439 RR---------LIQP 444 + +++P Sbjct: 310 EKSPNVPLSDHIVKP 324 >gi|256851169|ref|ZP_05556558.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260660593|ref|ZP_05861508.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 115-3-CHN] gi|256616231|gb|EEU21419.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN] gi|260548315|gb|EEX24290.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 115-3-CHN] Length = 461 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 15/297 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P+ FK++ + ++ + A + + + + P G+ Sbjct: 6 LPKEFKDKYQKLLA-KKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGVADAY 64 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 E + G + QD SA P + G VLDLCAAPGGK+ + + Sbjct: 65 YGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKG 124 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR N++R + D K FDA+LVDAPCS G Sbjct: 125 LLVANEISTSRAKNLRENIERWGADNCLVTNEDTSHLAQKFPRFFDAILVDAPCSGEGMF 184 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ D + + +++ + Q+++L + + +KPGG +++S C+ ++ EE+ ++ Sbjct: 185 RKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICAYLVN 244 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + ++ A L E R P+ F Sbjct: 245 ELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWPEDEIGEGQ--------FLAKF 293 >gi|297206034|ref|ZP_06923429.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16] gi|297149160|gb|EFH29458.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii JV-V16] Length = 781 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 15/297 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P+ FK++ + ++ + A + + + + P G+ Sbjct: 326 LPKEFKDKYQKLLA-KKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGVADAY 384 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 E + G + QD SA P + G VLDLCAAPGGK+ + + Sbjct: 385 YGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKG 444 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR N++R + D K FDA+LVDAPCS G Sbjct: 445 LLVANEISTSRAKNLRENIERWGADNCLVTNEDTSHLAQKFPRFFDAILVDAPCSGEGMF 504 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ D + + +++ + Q+++L + + +KPGG +++S C+ ++ EE+ ++ Sbjct: 505 RKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICAYLVN 564 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + ++ A L E R P+ F Sbjct: 565 ELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWPEDEIGEGQ--------FLAKF 613 >gi|226507554|ref|NP_001151492.1| NOL1R [Zea mays] gi|195647210|gb|ACG43073.1| NOL1R [Zea mays] Length = 498 Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 83/420 (19%), Positives = 153/420 (36%), Gaps = 56/420 (13%) Query: 44 RDQILVRAIVNVTLRFLPRIDAVLD--FVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101 R++ A+V TL++LP + VL +L S +++ + V+ IL+ Sbjct: 77 RNKRATFALVCQTLKYLPILKEVLASSEILSSKWKKQEELVY----VTTYDILFG---QG 129 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 V +VEQ +++ L R+ R +LL + + P + L Sbjct: 130 IAVSGSVEQLIMLQKDSLRTTLDKVCARKRVRCVEDLLSNKSAVKPKPRF----LRVNTL 185 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 K ++ + +D + + + + P +G Sbjct: 186 KVTTESVIEELNKMHMVD----------------KDEMVPDMLVLPPGTDLHNHPLVTDG 229 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEK 278 ++Q ++ + V+D CAAPG KT L + + A +++K R + Sbjct: 230 KVFLQGRASCMVAVALCPKPGWKVIDACAAPGNKTVHLAALMNGEGSIIACELNKERAKT 289 Query: 279 LRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WT 331 L+ + R I+ D + A+L+D CS +G D L + Sbjct: 290 LQHTVRRSGANNIRIVNGDFLEVDRNDPSYAEVHAILLDPSCSGSGISTERLDYLLPSHS 349 Query: 332 RDTDDIV-------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 RD+ D K + FQ+K L +SF VV+S CS+ + ++E+V+ VL + Sbjct: 350 RDSQDDAGTSSRVMKLSAFQKKALSHALSFPSVE-RVVYSTCSIHQAENEDVINSVLPLA 408 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + W + + E +R P G++GFF + P Sbjct: 409 TSLGFELATPFPQWHRRGLPVFQGSEHLLRTDP---------EDGLEGFFIALFVKKAGP 459 >gi|308802602|ref|XP_003078614.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri] gi|116057067|emb|CAL51494.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri] Length = 565 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 64/294 (21%), Positives = 103/294 (35%), Gaps = 69/294 (23%) Query: 211 SIVSLPGFAE-----GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265 ++ L F + G Q+ + IP V+D+CAAPG KT+QL+ + Sbjct: 23 AVRGLHAFLKTATETGALTRQELVSMIPPLFLDVEPGHLVMDMCAAPGSKTSQLLEMLHE 82 Query: 266 -----------VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLF 307 V A D S +R L R + A + A + K F Sbjct: 83 ASGPSETPRGVVVANDASLQRANLLTHQCKRSNSPALIVTNHQAQLFPILHDAKGKKLRF 142 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D +L D PCS GT+R+ PD+ + V Q ++ + + GG +V+S CS Sbjct: 143 DRILADVPCSGDGTLRKSPDLWRKWNASSGVDLHTLQLEIATHALRLLDVGGRLVYSTCS 202 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA----------------------- 404 L+ ++E VV +L+ + VELV ++ + + A Sbjct: 203 LNPLENEAVVAALLKRAGGAVELVDVSKSLPELKRRAGMKLWKVGDVFGWHNSFEETGTK 262 Query: 405 ---------------MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E +RI P + GFF + + Sbjct: 263 RQKTIAKTMFWEASYEQFPLERCVRIFPHL--------DDTGGFFITVFEKKGE 308 >gi|149578470|ref|XP_001521204.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 2 protein [Ornithorhynchus anatinus] Length = 837 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 100/285 (35%), Gaps = 71/285 (24%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 201 ISRQEAVSMIPPLLLNVEPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 260 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL+ ++ DA +D +L D PCS GT+ Sbjct: 261 NKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLHIDVNGRKEVLFYDRILCDVPCSGDGTM 320 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G+ + GG +V+S CSL+ + E V+ +L Sbjct: 321 RKNIDVWKKWTTLNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 380 Query: 383 SSPIPVELVPLNSAY------------------------------------------WKS 400 S +EL ++S K Sbjct: 381 KSEGALELADVSSELPGLKWMPGVTQWKVMMKDGQWFADWKDVPQSRHTQIRPTMFPPKD 440 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA-LRRLIQP 444 + A+ E +RI P GFF L++ P Sbjct: 441 QEKLKAIHLERCLRILPHHQ--------NTGGFFVAVLLKKSSMP 477 >gi|30109258|gb|AAH51209.1| Nsun5 protein [Mus musculus] Length = 286 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 23/247 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L V+D CAAPG KT+ + Sbjct: 11 VFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLK 70 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCS 317 + K+ A D +RL + + R + ++ E D P +L+D CS Sbjct: 71 NQGKIFAFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYILLDPSCS 130 Query: 318 STGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G + R T + + A FQ++ L + F ++ +V+S CSL ++++ Sbjct: 131 GSGMLSRQLEEHGEGTPSKERLQALAGFQQRALCHALRFPSLQ---RLVYSTCSLCQEEN 187 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+VVQ+ L+ + L P+ W ++ E +R +P+ GF Sbjct: 188 EDVVQEALQHNSGTFRLAPVLPT-WPHRGLSTFPGSEHCLRASPETTL--------TGGF 238 Query: 434 FAVALRR 440 F R Sbjct: 239 FIAVFER 245 >gi|323344524|ref|ZP_08084749.1| NOL1/NOP2/sun family protein [Prevotella oralis ATCC 33269] gi|323094651|gb|EFZ37227.1| NOL1/NOP2/sun family protein [Prevotella oralis ATCC 33269] Length = 475 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 117/303 (38%), Gaps = 11/303 (3%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P+ F+ E G E + + + + Sbjct: 1 MKLPKEFEAYTEKLMGSELYAQLLQGLAEEPHAFVRTNPFKGASFAICGSKGTVEWYEHG 60 Query: 206 KELPESIVSL--PGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI- 260 + P GV++VQ+ S+ Q+ +++LD+CAAPGGK+ Sbjct: 61 HWFADRPNFTFDPLLHAGVYYVQEKSSMFLAQVLRQHITGPVTMLDMCAAPGGKSTLARV 120 Query: 261 --VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 +G+ + + K+R + L N+ + + + +Y +FD +L D PCS Sbjct: 121 VLPAGSLLVCNEPVKQRAQVLSENVQKCGIAEVIVTNNYPEEYRKAGLMFDVILCDVPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ + + ++ K + QR+++ ++PGG++V+S C+ + +++EE V Sbjct: 181 GEGMFRKDANAIKEWSIGNVDKCSRLQREIVRSAWECLRPGGLLVYSTCTFNAKENEENV 240 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 Q + + V + + + + R P + D V +G F Sbjct: 241 QWICKELKGEPVGVDICKEWNICGSLLSGFDAPVY-RFIPRYVGDKDCVQG--EGLFMAV 297 Query: 438 LRR 440 LR+ Sbjct: 298 LRK 300 >gi|156379129|ref|XP_001631311.1| predicted protein [Nematostella vectensis] gi|156218349|gb|EDO39248.1| predicted protein [Nematostella vectensis] Length = 668 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 114/333 (34%), Gaps = 73/333 (21%) Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASI 232 L D W L+ + K + G Q+A + I Sbjct: 72 QVDPPTSLPWYPDELAWKVNLSRKFIRKSPSIKKFHQFLVQETE---CGNISRQEAVSMI 128 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTALDVSKRRLEKLRCN 282 P L +LD CAAPG KT+Q+I V A ++ +R L Sbjct: 129 PPLLMDIKPGQKILDTCAAPGSKTSQIIEMLHGDKETGIAEGLVIANELQNKRCYMLIHQ 188 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGTIRRHPDVLWT 331 RL + I DA Y + FD +L D PCS GT+R++P + Sbjct: 189 SKRLRSPSCVITNHDASTYPTLHVKKENGDRTPLLFDRILCDVPCSGDGTMRKNPLIWNK 248 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 V Q ++L + + ++ GG +V+S C++ ++E VV ++LR+S +ELV Sbjct: 249 WTPQLGVSLHRTQLRILARAMEMLEVGGRIVYSTCTMSPIENESVVAEMLRNSDGALELV 308 Query: 392 PLNSA-----------------------------------------YWKSIDMAMALSPE 410 L++ + A A+ E Sbjct: 309 DLSNELPNLKRSPGLHSWKLMMKDGSEVTGCDPGSPAFLGGFRPSMLPPPDNEAKAMHLE 368 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 IR+ P + GFF AL + Q Sbjct: 369 CCIRVYPHQQD--------TGGFFIAALVKTKQ 393 >gi|330998285|ref|ZP_08322110.1| NOL1/NOP2/sun family protein [Paraprevotella xylaniphila YIT 11841] gi|329568674|gb|EGG50475.1| NOL1/NOP2/sun family protein [Paraprevotella xylaniphila YIT 11841] Length = 503 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 60/275 (21%), Positives = 106/275 (38%), Gaps = 11/275 (4%) Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV 234 + L E V +G P F G ++VQ+A++ Sbjct: 41 NPFKSLWAGLSTEYLNGGDGPVPWASGEGGYLSERPPFTFDPLFHAGAYYVQEAASMFLG 100 Query: 235 Q--LFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLY 289 Q + LDLCAAPGGK+ + G+ + A + K R + L NL + Sbjct: 101 QVLCRYVTRPVIALDLCAAPGGKSTHIRSCLPEGSLLVANEPVKARAQVLLENLTKWGHP 160 Query: 290 AEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D+ FD ++ D PCS G R+ D + + + QR++L Sbjct: 161 DVVVTNSYPRDFARLPAFFDLLVTDVPCSGEGMFRKEEDAVTGWSMEAVRMCRDRQREIL 220 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 +KPGG++V+S C+L+ + EE V + + + + + ++ S Sbjct: 221 RDVWPSLKPGGLLVYSTCTLNALEDEENVAWIAEELGAEILPLDVEPGWGVVGNLLPLSS 280 Query: 409 PEGWI---RITPDMLEKIDGVSSGMDGFFAVALRR 440 + + R+ P + + +GFF LR+ Sbjct: 281 VKDTVKAERLFP--VAHFIPGFTRGEGFFLAVLRK 313 >gi|291279543|ref|YP_003496378.1| hypothetical protein DEFDS_1153 [Deferribacter desulfuricans SSM1] gi|290754245|dbj|BAI80622.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 375 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 20/233 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267 ++ + F +G + +QD ++ + L + ++LD+CA GGK A + + Sbjct: 158 NVRVMEKFKKGFFEIQDEASQLITFLLPIIPGNNILDICAGTGGKSLAIASHFYNSINIE 217 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 A D+ K RL+KL ++ +DAVL+DAPCS GT+RR D Sbjct: 218 AFDIDKNRLQKLAKR------SKIADAKIKIIKKPKTNFYDAVLIDAPCSGLGTLRRDVD 271 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + K QR + + + K GG +++ CS K+++E+ V+ L + Sbjct: 272 LNIRTTPRSLKKVLNLQRTIFNKAVESAKNGGYIIYVTCSFLKEENEKQVEYFLENHKN- 330 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K I+++ L+ + + K +GMD FF ++ Sbjct: 331 ----------IKLINISNILTDNHFNTFIHNQFFKTSPKINGMDSFFGAVFQK 373 >gi|110638264|ref|YP_678473.1| tRNA and rRNA cytosine-C5-methylase [Cytophaga hutchinsonii ATCC 33406] gi|110280945|gb|ABG59131.1| tRNA and rRNA cytosine-C5-methylase [Cytophaga hutchinsonii ATCC 33406] Length = 468 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 23/303 (7%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +P+ F ++E G + S +++ W + +P Sbjct: 5 QLPQAFITQMETLLGNDYTAFESALLRPS---RRSIRLHPHKWPQPMGLTQVPWYKNGYW 61 Query: 207 ELPES-IVSLPGFAEGVWWVQDASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQLIV 261 E+ + P F G ++VQ+AS+ Q L+VLDLCAAPGGK+ + Sbjct: 62 LDEEATVTYDPLFHAGTYYVQEASSMFLAQLLEACIKDKEELTVLDLCAAPGGKSTLICD 121 Query: 262 ---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDAPCS 317 + + +V K R+ L NL + + D FD ++VDAPCS Sbjct: 122 VLDEKHLLISNEVIKTRVNILDENLLKWGYNNVIVTHNDPADFDRLGTFFDIIVVDAPCS 181 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + DT + QR++L +KPGGI+++S C+ +++++EE + Sbjct: 182 GEGMFRKDPAAINEWDTAHVDLCCSRQRRILSDIWQVLKPGGIIIYSTCTFNRKENEENM 241 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + + + + + + R P + GFFA Sbjct: 242 RWMQEQYQAEGIELNIPAFEGVETGNENGI---HFYRFYPHKVTGE--------GFFASV 290 Query: 438 LRR 440 +R+ Sbjct: 291 IRK 293 >gi|291402236|ref|XP_002717453.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Oryctolagus cuniculus] Length = 469 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 103/272 (37%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLSSYLYLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKISNKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMSQDTEGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T ++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTVT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L + P ++L P + LS E ++ + Sbjct: 377 LAENEEQVAWALATFPC-LQLQPQEPLIGGEGMVGAGLSLEQLKQL--QRFDPSVVPLQD 433 Query: 430 MD---------------------GFFAVALRR 440 D GFF + Sbjct: 434 TDIDSFKNARMEDMIWLANKDCIGFFIAKFVK 465 >gi|71414717|ref|XP_809451.1| methyltransferase [Trypanosoma cruzi strain CL Brener] gi|70873834|gb|EAN87600.1| methyltransferase, putative [Trypanosoma cruzi] Length = 831 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 78/424 (18%), Positives = 144/424 (33%), Gaps = 58/424 (13%) Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQIL--------YLDVADYAVVDLAVEQAKRDKENRH 119 S++ + + L ++AQ++ +V +D K + R Sbjct: 87 APRSQSTIEKIDVTE---LCFAIAQVIAPVNVHERRRNVGSTEPLDENAPLIKYYSKGRF 143 Query: 120 FA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + N+ +V ++ + ER E + Sbjct: 144 ASLLECANTEDAQVEWQRFIACISSPLPMTLRVHRNERTLKRIADE-------FLLHDPM 196 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + V + + E I A Q+A + +PV + Sbjct: 197 LREVVHSVSPLLPPSIGLYGCSHAVYHTEPRVEYICRT-LHAASAVSFQEAVSVLPVMVA 255 Query: 238 GTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTA--------LDVSK-RRLEKLRCNLD 284 + +VLD+CAAPG KT ++ G + + + + + L L Sbjct: 256 DIHPHHAVLDMCAAPGSKTLHVLDEMLQYGWSTYSVSQGVFFVNEKDRIKATQILPARLK 315 Query: 285 RLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R H DA + +K FD ++ D PCS GT+R+ P + Sbjct: 316 RFHAPNVICTRCDASQWPRLFYSFERGSSLAEKRFDRIICDVPCSGDGTVRKEPASASSW 375 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + Q+ LL +G+ +K GGI+V+S CS++ ++ EEVV L VEL+ Sbjct: 376 SPGYVKSLVPTQKALLRRGLDLLKEGGILVYSTCSMNPKEDEEVVCAGLELFGDTVELLD 435 Query: 393 LNSAYWKSIDMAMALS-------PEGWIRITPDMLE-----KIDGVSSGMDGFFAVALRR 440 +N+ + + ++ + I P + ++ GFF A R+ Sbjct: 436 VNAILREKGALLHSVGGILSPNVDQLQIATLPLTFDGRKVLRVLPHRDDTGGFFVAAFRK 495 Query: 441 LIQP 444 P Sbjct: 496 RSLP 499 >gi|261403075|ref|YP_003247299.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus vulcanius M7] gi|261370068|gb|ACX72817.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus vulcanius M7] Length = 265 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 69/265 (26%), Positives = 126/265 (47%), Gaps = 25/265 (9%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + + +K+ P SI S P + G + Q S+ IP + + Sbjct: 18 NRLERKGIVLKETFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPKEDDF 77 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+C+APGGKT ++ + + A+++SK R + L+ N++R+ + II D Y Sbjct: 78 VLDMCSAPGGKTTHLAQIMNNNGCIVAVEISKTRTKALKSNINRMGVLNTIIINKDMRKY 137 Query: 302 CPKK-----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FD +L+DAPC+ +H +V +DI + Q++LL + +K Sbjct: 138 KEELLKKKIQFDKILLDAPCTGNEIKDKHRNV----SKEDIKYCSLRQKELLNIALDLLK 193 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V+S CS++ +++EEV++ +L ++ +ELV L + I++ +G +R+ Sbjct: 194 KGGELVYSTCSIEVEENEEVIRHIL-NNRNDIELVYLTPDKFLGINIKKGYL-DGTLRVF 251 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P FF LR++ Sbjct: 252 PPNEP-----------FFIAKLRKI 265 >gi|31753229|gb|AAH53751.1| NOL1/NOP2/Sun domain family member 6 [Mus musculus] Length = 476 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 62/272 (22%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F ++Q+ +++ + +L++CAAPGGKT + Sbjct: 200 EPIYLSPSFDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILEMCAAPGGKTTHTAALMQDK 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 260 GEVIALDKILTKVNKLKQNASLLGLHSIRAFCFDATKALKLDTTDGIEGGPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 320 IILDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLLHVAVQLLKPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + L+ E ++ + Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMVGAGLTLEQLKQL--QRFDPSVVPLQN 433 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 434 MDTDSLGEARREDMIWLANKDCIGFFIAKFLK 465 >gi|260591056|ref|ZP_05856514.1| NOL1/NOP2/sun family protein [Prevotella veroralis F0319] gi|260536921|gb|EEX19538.1| NOL1/NOP2/sun family protein [Prevotella veroralis F0319] Length = 468 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 122/316 (38%), Gaps = 15/316 (4%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 ++ ++ +P F + +G+E P + + ++N Sbjct: 21 CPIIYKVENAPTLPPAFVDYTRKLFGEELFDVFLKGLTEPAPTSIRKNSYKLSATEEVNP 80 Query: 196 VML-----PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDL 248 + + P GV++VQ+AS+ + + + LDL Sbjct: 81 NLHPEPIPWCKEGFWLAERPNFTFDPMLHTGVYYVQEASSMFLSHVLRHYVKHPVMALDL 140 Query: 249 CAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-K 304 CAAPGGKT G+ + + + +R + L N+ + + +Y K Sbjct: 141 CAAPGGKTTCARSSLPQGSFLFSNEPIPKRAQILAENVQKYGHSDVIVTNNYPREYQKTK 200 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 FD ++ D PCS G R+ P + T ++ QR ++ +KPGG++++S Sbjct: 201 LTFDVIIADVPCSGEGMFRKDPQAIAEWSTTNVENCWKLQRSIISDIWDNLKPGGLLIYS 260 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 C+ + + EE V +L EL+P+ + +I ++ +P P + + Sbjct: 261 TCTFNAHEDEENVAWILDEY--NAELLPVPTEEAWNITSSLIGNPSKTASNFP--VYRFI 316 Query: 425 GVSSGMDGFFAVALRR 440 + +G F +R+ Sbjct: 317 PGKTRGEGLFMAVIRK 332 >gi|229824807|ref|ZP_04450876.1| hypothetical protein GCWU000182_00156 [Abiotrophia defectiva ATCC 49176] gi|229790810|gb|EEP26924.1| hypothetical protein GCWU000182_00156 [Abiotrophia defectiva ATCC 49176] Length = 468 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 20/266 (7%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 K + G + P + G++++Q+ SA P + VLDLCAA Sbjct: 54 KTENIPWIDNGYYFDGSVFAATRHPYYYAGLYYIQEPSAQTPANILRVDPGDRVLDLCAA 113 Query: 252 PGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 PGGK+ + + + + D+S R + L NL + I + Sbjct: 114 PGGKSTELAAKLNGKGVLVSNDISATRAKALLKNLGVFGIKNALITSETPKNLSDVFKGY 173 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 F+ +LVDAPCS G R+ P ++ + Q+ +L ++ + G +++S C Sbjct: 174 FNKILVDAPCSGEGMFRKEPAIIKNWEQYGTGYYNDLQKDILPNAVNMLSDDGYLLYSTC 233 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE-----GWIRITPDMLE 421 + ++E + +L P + +S + + G +R+ P +E Sbjct: 234 TFSPDENEGTINYILTMFPELEVIPVNDSYEGFDSGHPEWIGSDKEEIRGAVRLWPHKME 293 Query: 422 KIDGVSSGMDGFFAVAL--RRLIQPK 445 G F L ++ PK Sbjct: 294 GE--------GHFLCLLHKKKTDYPK 311 >gi|330685494|gb|EGG97147.1| NusB family protein [Staphylococcus epidermidis VCU121] Length = 228 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 17/224 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + R ++ + ++ + ++ L D+ L +V T++ Sbjct: 1 MTNSI--RGLAFETIQAILDEGAYSNLEINEVLSTYEISDL---DKGLFTELVYGTVKRK 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 +D L L + + +++LL +S+ Q +YLD V D+A+++ AVE AK + + Sbjct: 56 YTLDFYLKPFLKTKIKG---WVRELLWMSIYQYVYLDKVPDHAIINEAVEIAKEE-GGYY 111 Query: 120 FAKLVNSILRRVS-------REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 +VN ILR + ++ + +RIA +P+W + YG E+ AI+ + Sbjct: 112 TGNVVNGILRNIMRSELPDVQDIQDDKKRIAIQYSLPKWLVDHWVTHYGLEQTEAIAQSF 171 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 + P+ + + ++A+ + S+ P Sbjct: 172 LEPVATTVRANITRGSIDDIISALEKKVILLIEMMFYHSVSIFP 215 >gi|301057241|ref|ZP_07198370.1| NOL1/NOP2/sun family protein [delta proteobacterium NaphS2] gi|300448692|gb|EFK12328.1| NOL1/NOP2/sun family protein [delta proteobacterium NaphS2] Length = 300 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 108/283 (38%), Gaps = 7/283 (2%) Query: 159 FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218 E+ + L V + +L V+ + + + +L + Sbjct: 19 QESLEKPFPVHLRMNRLLAAPSKVVSRLRERGIRLTQVLKAYDTLFVAQNLPYPGNLLEY 78 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275 G + Q ++++ + VLD+CAAPGGK+A L + + + D+ R Sbjct: 79 FLGYFHPQAMTSALAALAMRPRKHALVLDMCAAPGGKSAHLADLVENTGFMVCNDLFSNR 138 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L L RL + + A ++ + FD +L D PCS G R + R+ Sbjct: 139 HVPLGHTLSRLGVQNAVVTGYQAQEFPLRHPFDYILADVPCSCEGKFRITSKKTFYREDK 198 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 K Q+K+LL+G +K G ++++ C+ + ++E V+ +L EL+P++ Sbjct: 199 GKTKLPDTQKKILLRGFDLLKADGEMLYATCTYNPAENEAVINSLLNHR--DAELLPIDL 256 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + R+ + + GFF + Sbjct: 257 KVAFEPGLTEWNHETYDKRL--ARTARFYPHQTDSVGFFMARI 297 >gi|296110425|ref|YP_003620806.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154] gi|295831956|gb|ADG39837.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154] Length = 471 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 111/316 (35%), Gaps = 33/316 (10%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 +PE F + N E + P+ + + + + Sbjct: 3 NLPEDFINK-YNRLLGEEADNFFKSFSKPVQKAYRINPLKDNTSVLDVPDQGQVPYGQWG 61 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263 + GV + Q+ SA ++ VLDL AAPGGKT + Sbjct: 62 HFGQVSGHTVAHVTGVVYSQEPSAQFVGEVVHPQPGERVLDLSAAPGGKTTHLASFMQQK 121 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGT 321 + + ++ R + L N++R + + + K FD +L+DAPCS G Sbjct: 122 GLLWSNEIFMNRAKVLSENVERFGIQNTIVTSHTPAELSAKLPQYFDKILLDAPCSGEGM 181 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++ + D + A QR +L + + ++PGG +++S C+ ++ E+++ + Sbjct: 182 FRKNETAIQQWHKDFPQELADLQRSILHEAVKMLRPGGQIIYSTCTFAPEEDEQMIAWLT 241 Query: 382 RSSPI---PVELVPLNS------AYWKSIDMAMALSPE----------GWIRITPDMLEK 422 + P P ++ W L+ E R+ P +L Sbjct: 242 SAYPTLTLNTIEKPAHAHLSDGRPEWADKQYTDGLTTESLTKDSTDLKKTARLWPHLL-- 299 Query: 423 IDGVSSGMDGFFAVAL 438 +G F L Sbjct: 300 ------NGEGHFVAKL 309 >gi|158255724|dbj|BAF83833.1| unnamed protein product [Homo sapiens] Length = 767 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 100/284 (35%), Gaps = 61/284 (21%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT----------AQLIVSGAKVTALDVS 272 Q+A + IP L + +LD+CAAPG KT + V A DV Sbjct: 158 ISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVD 217 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGTI 322 +R L RL ++ DA +D +L D PCS GT+ Sbjct: 218 NKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTM 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ DV T + ++ Q ++ +G + GG +V+S CSL+ E V+ +L Sbjct: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIGDEAVIASLLE 337 Query: 383 SSPIPVELVPLNSAYW-----KSIDMAMALSPEGWI-------------RITPDMLE--- 421 S +EL +++ I ++ +G +I P M Sbjct: 338 KSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKD 397 Query: 422 -------------KIDGVSSGMDGFFAVALRRLI-------QPK 445 +I GFF L + QPK Sbjct: 398 PEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441 >gi|315638455|ref|ZP_07893632.1| NOL1/NOP2/sun family protein [Campylobacter upsaliensis JV21] gi|315481446|gb|EFU72073.1| NOL1/NOP2/sun family protein [Campylobacter upsaliensis JV21] Length = 288 Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 24/298 (8%) Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNAVMLPTGGIRLKEL 208 +L Y + + + ++ S + + + F I + L L + K Sbjct: 4 KLAQIYTQNELEILKESFKSAKNVCVFLNFLKTNEIMINEFFKDLEFQKLNSFCYLFKAQ 63 Query: 209 PESI-VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGA 264 SI + F EG +++Q+ S+ + + N S+LD+CAAPGGK+ + + A Sbjct: 64 DRSILSKMKAFNEGHFYIQNYSSYLCAKNLSVKPNESILDMCAAPGGKSINLANFMQNKA 123 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 + ++ +K R L+ NL + A + + FD +L+DAPCS+ I Sbjct: 124 YLACVEANKERFFTLQKNLKNYGVNAKIFLKDAKNIGRLCPLKFDKILLDAPCSTLAKIG 183 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + +I A Q+KLL + +K GG +V+S C+ ++++EEV++ LRS Sbjct: 184 FENV----KSPKEIKALALLQKKLLHSALKALKHGGELVYSTCTFLREENEEVLENALRS 239 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + E RI P DGFF +R++ Sbjct: 240 EFELEFLELDLEGVIAKEAKSEFKELEKARRIMPC---------ENYDGFFIAKMRKI 288 >gi|322818072|gb|EFZ25590.1| methyltransferase, putative [Trypanosoma cruzi] Length = 824 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 134/387 (34%), Gaps = 47/387 (12%) Query: 97 DVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 +V +D K + R + + N+ +V ++ + E Sbjct: 121 NVGSTEPLDENAPLLKYYSKGRFASLLECANTEDAQVEWQRFIACISSPLPMTLRVHRNE 180 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 R E +L C + + I + + E I Sbjct: 181 RALKHIADEFLLHDPMLCEVVHSVSPLLPPSIGLY-------GCSHAVYHTEPRVEYICR 233 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------- 265 A Q+A + +PV + + +VLD+CAAPG KT ++ + Sbjct: 234 T-LHAASAVSFQEAVSVLPVMVADIHPHHAVLDMCAAPGSKTLHVLDEMLQYGWSTSSVS 292 Query: 266 ---VTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDA 309 + + + + L L R H DA + +K FD Sbjct: 293 QGVFFVNEKDRIKATQILPARLKRFHAPNVICTRCDASQWPRLFYSFERGSSFAEKRFDR 352 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 ++ D PCS GT+R+ P + + Q+ LL +G+ +K GGI+V+S CS++ Sbjct: 353 IICDVPCSGDGTVRKEPASASSWSPGYVKSLVPTQKALLRRGLDLLKEGGILVYSTCSMN 412 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS-------PEGWIRITPDMLE- 421 ++ EEVV L VEL+ +N+ + + ++ + I P + Sbjct: 413 PKEDEEVVCAGLELFGDTVELLDVNAILREKGALLHSVGGILSPSVDQLQIATLPLTFDG 472 Query: 422 ----KIDGVSSGMDGFFAVALRRLIQP 444 ++ GFF A R+ P Sbjct: 473 RKVLRVLPHRDDTGGFFVAAFRKRSLP 499 >gi|145345894|ref|XP_001417434.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577661|gb|ABO95727.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 655 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 125/396 (31%), Gaps = 66/396 (16%) Query: 106 LAVEQAKRDKENRHFAK--LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 A E + A+ ++ R E + E + + Sbjct: 13 EPPALANERFEAYYAAQGVCEDAGDFRAMMEAFRRPLPLTFRLNASTALVEAVRRKLEGD 72 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + A+ + D +W ++ L G Sbjct: 73 VLPALKREASMKPPKCVAWYPDRLSWQIDISQSASLKQSESRGVLGLHAFLKSAGETGAL 132 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-----------VTALDVS 272 Q+ + IP V+D+CAAPG KT+QL+ V A D S Sbjct: 133 TRQELVSMIPPLFLEVKPKHRVIDMCAAPGSKTSQLLEMLHGATNAGETPRGVVVANDAS 192 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRH 325 +R L R + A + A + K FD +L D PCS GT+R+ Sbjct: 193 LQRANLLTHQCKRSNSPALVVTNHQAQLFPILHDAKGKKIRFDRILADVPCSGDGTLRKS 252 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 PD+ + V Q ++ + ++ GG +V+S CSL+ ++E VV +L+ + Sbjct: 253 PDLWKKWNASSGVDLHTLQLEIATHALRLLEVGGRLVYSTCSLNPLENESVVAALLKRAK 312 Query: 386 IPVELVPLNSAYWKSIDMA--------------------------------------MAL 407 VELV ++ + + A+ Sbjct: 313 GSVELVDVSKSLPELKRRPGMKRWKVGDIYGWHDSFEETGKKRMKTVAKTMFWNREYDAM 372 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E +R+ P + GFF AL++ + Sbjct: 373 PLERCVRVFPHL--------DDTGGFFITALKKTAE 400 >gi|309804792|ref|ZP_07698856.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners LactinV 09V1-c] gi|309806295|ref|ZP_07700308.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners LactinV 03V1-b] gi|309807767|ref|ZP_07701701.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners LactinV 01V1-a] gi|309809953|ref|ZP_07703801.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners SPIN 2503V10-D] gi|308165902|gb|EFO68121.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners LactinV 09V1-c] gi|308167279|gb|EFO69445.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners LactinV 03V1-b] gi|308169027|gb|EFO71111.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners LactinV 01V1-a] gi|308169741|gb|EFO71786.1| ribosomal RNA small subunit methyltransferase B family protein [Lactobacillus iners SPIN 2503V10-D] Length = 135 Score = 116 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 18/140 (12%) Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 Y + FD +LVDAPCS G IRR P+V + + +D+ + Q +L + G Sbjct: 12 YFFGQQFDKILVDAPCSGLGLIRRKPEVRYEKQMEDLKHLSEIQYNILDHVAGLLAENGE 71 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C++ +++E+VV++ L + P L P LS I+I PD Sbjct: 72 LVYSTCTISIEENEDVVKRFLTNHP-DFSLAPFEVGN---------LSKCKMIKIFPDDY 121 Query: 421 EKIDGVSSGMDGFFAVALRR 440 DGFF + Sbjct: 122 --------NSDGFFIAKFVK 133 >gi|323303251|gb|EGA57049.1| Nop2p [Saccharomyces cerevisiae FostersB] Length = 509 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 112/277 (40%), Gaps = 19/277 (6%) Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 + R LL+ I + E+L N + + +A I + Sbjct: 219 AEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNTL 278 Query: 185 --DIETWAHKLNAVMLPTGGIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPV 234 A L + I I + P + G + +Q AS+ +PV Sbjct: 279 KTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLPV 338 Query: 235 QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 N +LD+ AAPGGKT ++ + V A D +K R + L N+ RL Sbjct: 339 IALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNT 398 Query: 292 DIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + DA ++ FD +L+DAPCS TG I + V +R D ++ Q++LLL Sbjct: 399 IVCNYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLS 458 Query: 351 GISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 I V K GG++V+S CS+ ++ E V+ L Sbjct: 459 AIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALXK 495 >gi|71030254|ref|XP_764769.1| hypothetical protein [Theileria parva strain Muguga] gi|68351725|gb|EAN32486.1| sun-family protein, putative [Theileria parva] Length = 447 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 60/326 (18%), Positives = 109/326 (33%), Gaps = 42/326 (12%) Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 + R PE +E+ YG E+ + I + L V Sbjct: 83 LSDRWRLMSNNKNLAPHIRCSFPEELFSLIEDEYGPEKAVRICNILNEEPVTFLRVNTLK 142 Query: 185 -DIETWAHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQLF 237 + L +P + P + G+ +QD S+ I Q Sbjct: 143 ISRDKAYKFLLHKGVPVEKCVFSNSGLFVQDKRKLLECPEYKSGIVEIQDESSQIIGQNI 202 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD C GGK + + ++ DV+ L+K + + + + I+ Sbjct: 203 NCAEGDHVLDFCCGSGGKSLVFGPKLGNRGRIYLHDVNNNLLQKAKKRMHKAGIRNYYIL 262 Query: 295 EMDAFDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 + + D V+VD PCS G R +PD WT + +++ QR ++ + + Sbjct: 263 DRNLEKMNKFYGKMDYVIVDVPCSGIGACRTNPDRKWTFNRENLNGLVMNQRMIVEESLP 322 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 F+K G +V+ CS+ K +++ V + Sbjct: 323 FLKNNGKLVYITCSIFKAENQSQVDFFSKKYN---------------------------- 354 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALR 439 + P+ S GM+G++ L Sbjct: 355 -LHPEEQILQLPESRGMNGYYMATLV 379 >gi|58266410|ref|XP_570361.1| tRNA (cytosine-5-)-methyltransferase [Cryptococcus neoformans var. neoformans JEC21] gi|57226594|gb|AAW43054.1| tRNA (cytosine-5-)-methyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 764 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 94/312 (30%), Gaps = 75/312 (24%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 ++ + F Q+A + IP + LD+CAA Sbjct: 120 WQVNAPKRVVRKTEPFKNFQRFLVGETEVGNLSRQEAVSMIPPLFLDVQPHHHCLDMCAA 179 Query: 252 PGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302 PG KTA S + A D +R L R+ + DA + Sbjct: 180 PGSKTAQIIEALNPHHTTSTGLLIANDSDYKRTHMLVHQTGRMPSKGLMVTNFDASMFPA 239 Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 FD +L D PCS GT+R++ ++ D Q ++L + ++ +K Sbjct: 240 IKLEEGKNLQFDRILADVPCSGDGTLRKNMEIWAKWGVADGNSLHSLQLRILERAMNMLK 299 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM--------ALS 408 PGG +V+S CSL+ + E V+ L LV ++S + Sbjct: 300 PGGRLVYSTCSLNPSEDESVIAAALLKH-TQFSLVDVSSDLPELKRRPGMDKWKVATQEG 358 Query: 409 PEGWIR-------------------------ITPD---------------MLEKIDGVSS 428 +G I P ++ Sbjct: 359 KDGEIHWYETFDEYRKAVDEGKEKEKGEKGKGLPSSLWAPENVESLNLNRCSMRLLPHDQ 418 Query: 429 GMDGFFAVALRR 440 GFF L R Sbjct: 419 DTGGFFVAVLER 430 >gi|313157070|gb|EFR56500.1| putative ribosomal RNA small subunit methyltransferase F [Alistipes sp. HGB5] Length = 480 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 14/259 (5%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSV 245 + + G F G ++VQ+A++ + + Sbjct: 69 AVLADADGRVPWCGDGYYLAARPQFTFDSDFHAGAYYVQEAASQFVGHLLQGVEVAGRRI 128 Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDY 301 LDLCAAPGGKT + V A ++ +RR + L N+ + + Sbjct: 129 LDLCAAPGGKTTLYASLVGPDGLVVANEIDRRRAQVLADNVRKWGTGNVAVTTCEARQLG 188 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD V VDAPCS G R+ D ++ A Q +LL + +KPGG++ Sbjct: 189 GFEAWFDVVAVDAPCSGEGMFRKDRDARGEWSEGNVKLCAARQDELLREAWRALKPGGVL 248 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++S C+ ++ + E V++++L + + + + R P Sbjct: 249 IYSTCTFNRDEDEGVLERMLGWAEDEAAQAGEVAVDASWGIVCGRVGAFRTFRFYPHRAR 308 Query: 422 KIDGVSSGMDGFFAVALRR 440 GFFA +R+ Sbjct: 309 GE--------GFFAAVVRK 319 >gi|317420025|emb|CBN82061.1| methyltransferase NSUN6 [Dicentrarchus labrax] Length = 467 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 34/260 (13%) Query: 210 ESIVSLPGFA---EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F + ++Q+ + + + G +LD+CAAPGGKT+ + + Sbjct: 212 EPLYQSPSFDGVLPSLAFLQNLPSVVVGHVLGPRPGERILDMCAAPGGKTSHIAALMGDQ 271 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD------------YCPKKLFDAVL 311 +V ALD + +++++R N LHL + ++ P + FD VL Sbjct: 272 GEVVALDRIRNKIDRIRENAQMLHLRSITAYCFNSTQAVSSDPAHTEGPPFPPESFDRVL 331 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 +DAPCS G + P++ T +I QRKL + +K GG++V+S C++ Sbjct: 332 LDAPCSGLG---QRPNMGTTWGLKEICSYQPLQRKLFHAAVRLLKKGGVLVYSTCTVTLA 388 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM- 430 ++EE V L + P + L P + LSPE +R+ ++ +G Sbjct: 389 ENEEQVAWALETFPC-LTLQPQEPHIGAEGMLGAGLSPEQ-LRLLQRFSPELSWEQTGTT 446 Query: 431 ------D----GFFAVALRR 440 D GFF + Sbjct: 447 ALSRRADSDTIGFFIAKFLK 466 >gi|149194741|ref|ZP_01871836.1| NOL1/NOP2/sun family protein [Caminibacter mediatlanticus TB-2] gi|149135164|gb|EDM23645.1| NOL1/NOP2/sun family protein [Caminibacter mediatlanticus TB-2] Length = 298 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%) Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268 + I + + ++Q+ S+ I VLDL AAPGGK+ KV+A Sbjct: 67 RKKITKSNTYTQNKIYIQNLSSIISALNLNVKEEDWVLDLAAAPGGKSLIFSEVAKKVSA 126 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 ++ K+R +++ N D ++FD V +DAPCSS I Sbjct: 127 VEPDKKRFFRMKRNFKEHGAKNIQTYNKDGRFVYKATGEMFDKVFLDAPCSSEAHIDGEV 186 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + + + Q++L++ +K GG ++++ C+ +++EE + +L+ P Sbjct: 187 T---WWNLKRVKRFSKLQKELIISAFECLKSGGEMIYATCTFSPEENEETLDFLLKKYPN 243 Query: 387 P------VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + K D + IRI PD GFF +++ Sbjct: 244 AKIQEINLPIKNIQEGITKWDDKEYNKEVKKAIRILPDGAFS---------GFFFAKIKK 294 Query: 441 LIQ 443 ++ Sbjct: 295 EVK 297 >gi|224092121|ref|XP_002309481.1| predicted protein [Populus trichocarpa] gi|222855457|gb|EEE93004.1| predicted protein [Populus trichocarpa] Length = 433 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 88/467 (18%), Positives = 164/467 (35%), Gaps = 72/467 (15%) Query: 2 KSGMN--------ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53 K +N AR ++ +L V++ + + S S R++ A+V Sbjct: 11 KPRLNNAERSAYFARREAAKVLHTVLQGDAKRQAVASI---KSLVYSPSIRNKKATFALV 67 Query: 54 NVTLRFLPRIDAV--LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 TL+ L I V + +L S R++ + + +L+ D A Sbjct: 68 CQTLKHLRIIKDVLEIANILNSKWKRQEELIYII----AYDVLFGKGISLVGGDAEKFLA 123 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 R A S + + + L Sbjct: 124 CRK---------------------------DAMQSALAKLVVRKKAKNIDDFIALYQPPD 156 Query: 172 CISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKE-----LPESIVSLPGFAEGVWWV 225 P Y+ + +K D+++ H+L + + + G +V Sbjct: 157 ITKPCYVRVNTLKLDVDSALHELGKQFKVQKDDMIPHLLVLPPHTDLHNHSLVLNGSIFV 216 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q ++S+ + VLD C+APG KT L + K+ A +++K R ++L Sbjct: 217 QGKASSMVAAVLDPKPGWEVLDACSAPGNKTVHLAALMKGKGKIIACELNKDRAKRLEDT 276 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDA---VLVDAPCSSTGTIRRHPDVLWTRDTDDI-- 337 + +++ D + PK F +L+D CS +GT + D L T D+ Sbjct: 277 IRLSGAANIEVLHGDFLNIDPKGPFSKVSAILLDPSCSGSGTAAQRLDHLLPSRTTDVVD 336 Query: 338 ----VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 K A FQ+K L +SF +V+S CS+++ ++E+VV +L + + Sbjct: 337 TERLNKLAAFQKKALAHALSFTAVK-RIVYSTCSINQIENEDVVNSILPLATSNGFQLAT 395 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W+ + + E +R P ++ GFF + Sbjct: 396 PFPQWQRRGLPVFEGSEHLLRTDPVEDKE---------GFFIALFVK 433 >gi|124027597|ref|YP_001012917.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus butylicus DSM 5456] gi|123978291|gb|ABM80572.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus butylicus DSM 5456] Length = 405 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 74/411 (18%), Positives = 145/411 (35%), Gaps = 47/411 (11%) Query: 45 DQILVRAI--VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV----SVAQI--LYL 96 D L+R + V + A L +L +LR + ++ L Sbjct: 27 DAGLLRELRRVYG-----GALSAALQAILEPPARYYVRV--NVLRADPGTVLDEMRAQGL 79 Query: 97 DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERL 156 +V + A+ R + +R + + A L Sbjct: 80 EVYADEELPEALWLPVRGPVEPRDTGCRLVVDKRAAESIMLGANVYAPG-------VVAL 132 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 + + + + D + L +R + S+ Sbjct: 133 DEACANPGAEVTVVSENGVPVANAVLAEDYRRAMEE--GRGLVAVNVRPRYRVPSLRDTV 190 Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSK 273 + GV + Q + ++ ++D+CAAPGGKT+ + A++ A+D S Sbjct: 191 WWRRGVIYEQSLPSMYASRILDPEPGAVIVDMCAAPGGKTSHIYELVRGEARIIAVDHSA 250 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R+ E++R L RL ++I D+ + D VL+D PC+S G I + + Sbjct: 251 RKTERMRMELGRLGHTRIEVIRADSRYLDRILGSGVADYVLLDPPCTSLGVIPK---IYD 307 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + D+ +A +QR+ L +KPGG++V+S C++ ++EE Q + Sbjct: 308 RKTLRDVANTAEYQRQFLRAAAKLLKPGGVLVYSTCTMTLMENEENTQYAIEK------- 360 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + LN + + L+ + + + G++ LR+ Sbjct: 361 LGLNPEEPQYHRFSRGLNQAWYAQ-------RSHPHVHRTTGYYIARLRKK 404 >gi|315653560|ref|ZP_07906480.1| NOL1/NOP2/sun family protein [Lactobacillus iners ATCC 55195] gi|315488922|gb|EFU78564.1| NOL1/NOP2/sun family protein [Lactobacillus iners ATCC 55195] Length = 469 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 MMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIQ----KTARFWIQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|67481353|ref|XP_656026.1| tRNA (cytosine-5-)-methyltransferase [Entamoeba histolytica HM-1:IMSS] gi|56473198|gb|EAL50640.1| tRNA (cytosine-5-)-methyltransferase, putative [Entamoeba histolytica HM-1:IMSS] Length = 605 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 93/259 (35%), Gaps = 46/259 (17%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 Q+ + +P L SVLD+CAAPG KT+QL+ V A DV K+R L Sbjct: 117 ISRQEVVSMLPAILLDVHEGSSVLDICAAPGSKTSQLVEMVGPTGCVVANDVDKQRSYLL 176 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL I A + FD +L D PC+ GTIR++ D + Sbjct: 177 THQTKRLSAPHIVITNYRAQELSFNGFQFDRMLCDVPCTGDGTIRKNVDARTKWHVMNAY 236 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--- 395 Q ++ + VK GG V+S CSL+ + E VV ++LR+ +EL+ Sbjct: 237 TLHREQLDIMKHVLCHVKVGGKFVYSTCSLNPIEDEAVVAELLRTFGDSIELIDARPLLP 296 Query: 396 -------------------------------AYWKSIDMAMALSPEGWIRITPDMLEKID 424 A+ + A E +RI P Sbjct: 297 TLKFSEGVSEWKVFDKHFTVMKDKNDNIPITAFPPKPEEAAKFHLEYTLRILPH------ 350 Query: 425 GVSSGMDGFFAVALRRLIQ 443 GFF + + Sbjct: 351 --QQNTGGFFTAVFIKKGE 367 >gi|288927631|ref|ZP_06421478.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330465|gb|EFC69049.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 486 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL----NAVMLPTG 201 ++P+ F G E + A + L + + + T Sbjct: 20 MVLPQEFTAYTRALMGNELYGKLLVALEQEPPVSLRLNPFKTKNGEVEVCNADESVAWTD 79 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--LSVLDLCAAPGGKTAQL 259 + P F G ++VQ+AS+ + L + +++LDLCAAPGGK+ L Sbjct: 80 YGYYLSGRPNFTFDPLFHAGAYYVQEASSMFVAWIVKQLIHSPITMLDLCAAPGGKSTAL 139 Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315 G+ + + +R L N+ + + A FDA+L D P Sbjct: 140 RSVLPQGSLLFCNEPITQRASILAENVQKFGHPDMVVSSNFAADYRKSGLQFDAILADVP 199 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + ++ + QR+++ +KPGG++++S C+ + +++E Sbjct: 200 CSGEGMFRKDAGAIAEWSETNVERCWRLQREIIADIWPCLKPGGLLIYSTCTFNDKENER 259 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V+ + + +L P+ SA+ + + + R P + + G F Sbjct: 260 NVEWIAQEFDADFDLPPIPSAWNITGSIGSDIPAC---RFIPGISKGE--------GLFL 308 Query: 436 VALRR 440 LR+ Sbjct: 309 CVLRK 313 >gi|195564994|ref|XP_002106092.1| EG:EG0007.9 [Drosophila simulans] gi|194203463|gb|EDX17039.1| EG:EG0007.9 [Drosophila simulans] Length = 747 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVLDVQPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSAFPNLLTTKPDGSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 ++ + +ELV + Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + E +R+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|114563407|ref|YP_750920.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella frigidimarina NCIMB 400] gi|122299557|sp|Q081I3|RSMF_SHEFN RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|114334700|gb|ABI72082.1| putative RNA methylase, NOL1/NOP2/sun family protein [Shewanella frigidimarina NCIMB 400] Length = 484 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 66/273 (24%), Positives = 123/273 (45%), Gaps = 26/273 (9%) Query: 188 TWAHKLNAVMLPTGGIRLKELPE-SIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLS 244 + +L+ V G ++ + + + +G++++Q+AS+ +P Sbjct: 55 SAGWQLSPVPWCADGFWIEGKDDIQLGNAIEHIQGLFYIQEASSMLPPTALFSNDNTAEI 114 Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+ +APG K Q+ + + + A + S R++ L N+ R+ + D Y Sbjct: 115 VLDVASAPGSKATQIAALMNNSGLLVANEYSASRVKVLHANVLRMGASHTALTHFDGRVY 174 Query: 302 CPK--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + FDA+L+DAPC GT+R+ P L D DD+ Q+ L+ +KPGG Sbjct: 175 GEYLYESFDAILLDAPCGGEGTVRKDPLALKHWDIDDVTAIGETQKDLIESAFLALKPGG 234 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 I+V+S C+L + +++ + + ++ P VE L + A + EG++ + P + Sbjct: 235 ILVYSTCTLSQLENQHICYHLQQTYPDAVEFESLAELF---DGADKACTEEGFLHVWPQI 291 Query: 420 LEKIDGVSSGMDGFFAVALRRLI-------QPK 445 + GFF +R+ QPK Sbjct: 292 YDSE--------GFFVAKIRKKASVERVKKQPK 316 >gi|312871742|ref|ZP_07731830.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 3008A-a] gi|311092684|gb|EFQ51040.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 3008A-a] Length = 469 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHQIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KTARFWIQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|260783662|ref|XP_002586892.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae] gi|229272021|gb|EEN42903.1| hypothetical protein BRAFLDRAFT_116066 [Branchiostoma floridae] Length = 471 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 31/256 (12%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDV 271 L ++Q+ +++ + VLD+CAAPGGKT L + + V A D Sbjct: 220 LNDVMSDSIFLQNLPSTVAGHVLDPQPGERVLDMCAAPGGKTTHLATLMNNQGTVIAFDK 279 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAF------------------DYCPKKLFDAVLVD 313 S+ +++K+ N RL L D P FD VLVD Sbjct: 280 SQGKVDKVMANARRLGLTCIQAYMFDGGKSASEAAVCEKDETSLGAPPYPPNTFDRVLVD 339 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 APCS+ G + P + + +QR+L + +K G +V+S C+L +++ Sbjct: 340 APCSALG---QRPALGNKMKLKTLKSYPSYQRRLFPAAVQVLKTGCTLVYSTCTLTLEEN 396 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE--GWIRITPDMLEKIDGVSSGMD 431 E V+ +L + P +ELVP +L+ + ++ + S D Sbjct: 397 EGQVEWLLNTFPC-LELVPQTPYLGGPGLSGTSLTQDQLQMLQRFEPWGDNRGENSHPSD 455 Query: 432 ----GFFAVALRRLIQ 443 GFF + + Sbjct: 456 RDTIGFFIAKFIKRAR 471 >gi|303326186|ref|ZP_07356629.1| NOL1/NOP2/sun family protein [Desulfovibrio sp. 3_1_syn3] gi|302864102|gb|EFL87033.1| NOL1/NOP2/sun family protein [Desulfovibrio sp. 3_1_syn3] Length = 282 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 16/261 (6%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + ++ RL P + G ++QD S+ +P +V Sbjct: 25 LRAQGYEFEPEPFSPLCRRLCREPRPLGGSLAAFFGYIYIQDRSSMLPPLALAPRTGEAV 84 Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301 LD+CA+PG K+ L V A + + RL LR NL + +L A Sbjct: 85 LDVCASPGSKSGFLAQLTGPTGFVLANEPAPARLGTLRANLHQCNLLQAATCSYGGENLP 144 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 ++A+ +D PCS GT +HP VL D + QR+LL S + PGG + Sbjct: 145 LVPASWNAIQLDPPCSGWGTAEKHPRVLKLWQGDKLNSLIGLQRRLLRHAASLLAPGGRL 204 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+ ++ ++E V + E +P + G +R+ + Sbjct: 205 VYSTCTTNEAENEAQVCFAEEELGLVRETLP----PFPGFAWEERPDGAGTLRVDGEKSR 260 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 GF+ LR+ Sbjct: 261 AQ--------GFYLALLRKTA 273 >gi|167386908|ref|XP_001737947.1| hypothetical protein [Entamoeba dispar SAW760] gi|165899045|gb|EDR25748.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 610 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 92/259 (35%), Gaps = 46/259 (17%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKL 279 Q+ + +P L SVLD+CAAPG KT+QL+ V A D K+R L Sbjct: 122 ISRQEVVSMLPAILLDVHEGSSVLDICAAPGSKTSQLVEMVGPTGCVVANDADKQRSYLL 181 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 RL I A + FD +L D PC+ GTIR++ D + Sbjct: 182 THQTKRLSAPHIVITNYRAQELSFNGFQFDRMLCDVPCTGDGTIRKNVDARTKWHVMNAY 241 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS--- 395 Q ++ + VK GG V+S CSL+ + E VV ++LR+ +EL+ Sbjct: 242 TLHREQLDIMKHVLCHVKVGGKFVYSTCSLNPIEDEAVVAELLRTYGDSIELIDARPLLP 301 Query: 396 -------------------------------AYWKSIDMAMALSPEGWIRITPDMLEKID 424 A+ + A E +RI P Sbjct: 302 TLKFSEGVSEWKVFDKHFTVMKDKNDNIPITAFPPKPEEAAKFHLEYTLRILPH------ 355 Query: 425 GVSSGMDGFFAVALRRLIQ 443 GFF + + Sbjct: 356 --QQNTGGFFTAVFIKKGE 372 >gi|195340889|ref|XP_002037045.1| GM12703 [Drosophila sechellia] gi|194131161|gb|EDW53204.1| GM12703 [Drosophila sechellia] Length = 744 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVLDVQPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSAFPNLLTTKPDGSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 ++ + +ELV + Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQVFTRFEEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + E +R+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|282934635|ref|ZP_06339878.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 208-1] gi|281301210|gb|EFA93511.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii 208-1] Length = 781 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 15/297 (5%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P+ FK++ + ++ + A + + + + P G+ Sbjct: 326 LPKEFKDKYQKLLA-KKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGVADAY 384 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGA 264 E + G + QD SA P + G VLDLCAAPGGK+ + + Sbjct: 385 YGEISGRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNKG 444 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + A ++S R + LR N++R + D K FDA+LVDAPCS G Sbjct: 445 LLVANEISTSRAKNLRENIERGGADNCLVTNEDTSHLAQKFPRFFDAILVDAPCSGEGMF 504 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++ D + + +++ + Q+++L + + +KPGG +++S C+ ++ EE+ ++ Sbjct: 505 RKNHDAVTYWSQEYVLECSNRQKEILNEAVKMLKPGGSLLYSTCTYAPEEDEEICAYLVN 564 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + ++ A L E R P+ F Sbjct: 565 ELGFKLVETKVSVASQGVPAWGENLDGIEYARRFWPEDEIGEGQ--------FLAKF 613 >gi|255550109|ref|XP_002516105.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] gi|223544591|gb|EEF46107.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] Length = 497 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 81/457 (17%), Positives = 163/457 (35%), Gaps = 57/457 (12%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +SG AR ++++L V++ S S R++ A+V TL+ LP Sbjct: 30 RSGFYARREAANVLKRVLQGHA---QRRATGSIKSLVYSPSVRNKRATFALVCQTLKHLP 86 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 I VL+ +L ++L+ + IL+ ++ +++ R Sbjct: 87 VIKDVLE--SAGALNTHSKKKEELMYIVAYDILFGQEIPLVVGDVEKFLLRRKNDLQRAL 144 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 AK++ + + + L + P + + S + Sbjct: 145 AKVLVRKKAKTIDDLLALYR--------PPDVSKPCYVRVNTLKSDVDSALLELGRQFTV 196 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + + + + P +G +VQ ++S+ Sbjct: 197 QKDDMVPNL--------------FVLPPNSDLHNHPLVLDGSIFVQGKASSMVAVALDPK 242 Query: 241 NNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLD C+APG KT + + ++ A +++K R+++L + ++ D Sbjct: 243 PGWEVLDACSAPGNKTVHVAALMRGKGRIIACELNKDRIKRLEDTVRLSGAANIEVRHCD 302 Query: 298 A----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIVKS---ACFQRKL 347 P A+L+D CS +GT + D L D +++ + A FQ+K Sbjct: 303 FLNLNPRDSPFSKIRAILLDPSCSGSGTAAQRLDHLLPSHATDPNNMERLKKLAAFQKKA 362 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPVELVPLNSAYWKSIDMA 404 L +SF VV+S CS+++ ++E+V+ +L S + W ++ Sbjct: 363 LAHALSFPAVE-RVVYSTCSINQTENEDVIISILPIAASHGFQLV---TPFPQWHRRGLS 418 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E +R P ++ GFF + Sbjct: 419 VFEGSEHLLRTDPVEDKE---------GFFIALFVKK 446 >gi|309803987|ref|ZP_07698069.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 11V1-d] gi|308163906|gb|EFO66171.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 11V1-d] Length = 469 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELISAYQESPKKGFRLNPLKYDYTNVKYNLDHQIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 MMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIQ----KTARFWIQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|210623494|ref|ZP_03293839.1| hypothetical protein CLOHIR_01789 [Clostridium hiranonis DSM 13275] gi|210153552|gb|EEA84558.1| hypothetical protein CLOHIR_01789 [Clostridium hiranonis DSM 13275] Length = 433 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 38/290 (13%) Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215 Y +++ AI + L D T L K + Sbjct: 22 FIKSYEQKKTTAIRVNTMKMEKDRLKGLLDCNTEDIPWAEEGLYYDEDECKPGRNPLHDS 81 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272 + ++Q+ SA V VLD+CAAPGGK+ + + + + +++ Sbjct: 82 GAY-----YLQEPSAMSVVPKADIQEGDIVLDMCAAPGGKSTYILSKLNNTGLLVSNEIN 136 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 R++ L NL+R I D+ + FD V++DAPCS G R+ + Sbjct: 137 ATRIKALGENLERFGAANAIITNTDSKGLLKVFEGYFDKVIIDAPCSGEGMFRKDQVAID 196 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +++ Q +++ G +K GG +V+S C+ K++ E+++ + Sbjct: 197 DWSYAKVIECRDIQHEIIRDGYKMLKNGGTLVYSTCTFAKEEDEDIIDGFAEEFENAEVV 256 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + R+ P ++ G F + + Sbjct: 257 LKE--------------------RLWPHKVKGE--------GHFVAKIIK 278 >gi|134111476|ref|XP_775654.1| hypothetical protein CNBD6080 [Cryptococcus neoformans var. neoformans B-3501A] gi|50258316|gb|EAL21007.1| hypothetical protein CNBD6080 [Cryptococcus neoformans var. neoformans B-3501A] Length = 722 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 94/312 (30%), Gaps = 75/312 (24%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 ++ + F Q+A + IP + LD+CAA Sbjct: 120 WQVNAPKRVVRKTEPFKNFQRFLVGETEVGNLSRQEAVSMIPPLFLDVQPHHHCLDMCAA 179 Query: 252 PGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302 PG KTA S + A D +R L R+ + DA + Sbjct: 180 PGSKTAQIIEALNPHHTTSTGLLIANDSDYKRTHMLVHQTGRMPSKGLMVTNFDASMFPA 239 Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 FD +L D PCS GT+R++ ++ D Q ++L + ++ +K Sbjct: 240 IKLEEGKNLQFDRILADVPCSGDGTLRKNMEIWAKWGVADGNSLHSLQLRILERAMNMLK 299 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM--------ALS 408 PGG +V+S CSL+ + E V+ L LV ++S + Sbjct: 300 PGGRLVYSTCSLNPSEDESVIAAALLKH-TQFSLVDVSSDLPELKRRPGMDKWKVATQEG 358 Query: 409 PEGWIR-------------------------ITPD---------------MLEKIDGVSS 428 +G I P ++ Sbjct: 359 KDGEIHWYETFDEYRKAVDEGKEKEKGEKGKGLPSSLWAPENVESLNLNRCSMRLLPHDQ 418 Query: 429 GMDGFFAVALRR 440 GFF L R Sbjct: 419 DTGGFFVAVLER 430 >gi|194764406|ref|XP_001964321.1| GF21493 [Drosophila ananassae] gi|190619246|gb|EDV34770.1| GF21493 [Drosophila ananassae] Length = 737 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLLVTNPDNSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 L+ + +ELV + Sbjct: 338 LKDADGALELVDAGHLVPGLKYKPGMTNWKLATKEVDQIFESFDEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + E IR+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLEKCIRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|332217198|ref|XP_003257743.1| PREDICTED: putative methyltransferase NSUN6 [Nomascus leucogenys] Length = 469 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 43/270 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDIVEDTEGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T ++ QRKL + +KP G++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDML 420 ++EE V L P + L P LS E ++ PD Sbjct: 377 LAENEEQVAWALTKFPC-LRLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTD 435 Query: 421 EKIDGVSSGMD----------GFFAVALRR 440 + D GFF + Sbjct: 436 VDSLREARREDMLRLANKDSIGFFIAKFVK 465 >gi|160880923|ref|YP_001559891.1| Fmu (Sun) domain-containing protein [Clostridium phytofermentans ISDg] gi|160429589|gb|ABX43152.1| Fmu (Sun) domain protein [Clostridium phytofermentans ISDg] Length = 488 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 125/337 (37%), Gaps = 52/337 (15%) Query: 148 IPEWFKERLENFYGKE-RVLAISDACISPLYIDLT----VKFDIETWAHKLNAVMLPTGG 202 +PE FK+R++ E + + + E + + Sbjct: 5 LPEDFKKRMQEMLSDEYEAYEKCYEEKHRGGLRINTLKLKNEEFEKISPYEIKQVPFIPN 64 Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---L 259 + E P + G++++Q+ SA P L VLDLCAAPGGK+ + Sbjct: 65 GYYYQEKEQPARHPYYFGGLYYIQEPSAMTPASLLPVEPGDKVLDLCAAPGGKSTELAAK 124 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCS 317 + + + D+S R + L N++ + FD +LVDAPCS Sbjct: 125 LQGKGVLVSNDISNSRAKALLKNIELFGVRNPVVISEAPAKLVNTFTGYFDKILVDAPCS 184 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P ++ + + Q++++L + +KPGG +++S C+ +++E + Sbjct: 185 GEGMFRKSPSIIKNWEQYGVDYYNKLQKEIILLAVKMLKPGGYLLYSTCTFSTEENEGTI 244 Query: 378 QKVLRSSPIPVELVPL---------------------------NSAYWKSIDMAMALSPE 410 + +L P +E+VP N+ +K D + Sbjct: 245 KFLLEEEP-DMEIVPAIWNSLENQPDYPLRGEDKDRLENMKNRNNVSYKGFDFGKPEWVD 303 Query: 411 G------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +R+ P +E G + LR+ Sbjct: 304 GPKELVHTLRLWPQRIEGE--------GHYVALLRKK 332 >gi|73948934|ref|XP_855665.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 isoform 2 [Canis familiaris] Length = 328 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 59 EPVYLSPSFDNVLPRYLFLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQ 118 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------FDYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 119 GEVIALDKISNKVEKIKQNALLLGLNSIKAFCFDGTKALKFDMVEKAEGNPPFLPESFDR 178 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ + ++ QRKL + +KPGG++V+S C++ Sbjct: 179 ILLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTIT 235 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + M LS E ++ + S Sbjct: 236 LAENEEQVAWALRTFPC-LQLQPQDPQIGGEGMMGAGLSFEQLKQL--QRFDPSVVPSWD 292 Query: 430 MD---------------------GFFAVALRR 440 D GFF + Sbjct: 293 TDIDSLRDARIEDMIGLANKDCIGFFIAKFIK 324 >gi|57040455|ref|XP_544240.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 isoform 1 [Canis familiaris] Length = 469 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------FDYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKISNKVEKIKQNALLLGLNSIKAFCFDGTKALKFDMVEKAEGNPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ + ++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVQLLKPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + M LS E ++ + S Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQDPQIGGEGMMGAGLSFEQLKQL--QRFDPSVVPSWD 433 Query: 430 MD---------------------GFFAVALRR 440 D GFF + Sbjct: 434 TDIDSLRDARIEDMIGLANKDCIGFFIAKFIK 465 >gi|303276849|ref|XP_003057718.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460375|gb|EEH57669.1| predicted protein [Micromonas pusilla CCMP1545] Length = 473 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 109/331 (32%), Gaps = 60/331 (18%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 A + L D W + L + + G Q+A Sbjct: 146 RAHTTRPPRALRWYPDALAWQVDVPKDALKKSDDFRALHRFLVQANE---TGAITRQEAV 202 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--------------TALDVSKRR 275 + IP L + VLD+CAAPG KT QL+ A D S +R Sbjct: 203 SMIPPLLLDVKPSHRVLDMCAAPGSKTFQLLEMLHHKASGETGAEAPAGVVVANDASLQR 262 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCP------------KKLFDAVLVDAPCSSTGTIR 323 L R + A + A + LFD VL D PCS GT+R Sbjct: 263 ANLLTHQTKRSNSPALIVTNHQAQKFPFLIEAGKGGDERRPILFDRVLADVPCSGDGTLR 322 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + PD+ V Q ++ + +K GG +V+S CSL+ + E VV +LR Sbjct: 323 KSPDLWKKWTPGSGVDLHGLQLEIATHAVRLLKVGGRLVYSTCSLNPLEDEAVVAALLRR 382 Query: 384 SPIPVELVPLNSAYWK------------SIDMAMALSPEGWIR--------ITP------ 417 ++LV ++ +P G R + P Sbjct: 383 GKGSLKLVDVSEKLPGLKRRPGMRTWHVGDVFGWHETPNGDGRRQRNVCETMWPPSGKAA 442 Query: 418 -----DMLEKIDGVSSGMDGFFAVALRRLIQ 443 D +I GFF VA+ ++ + Sbjct: 443 SEMRLDRCVRILPHLDDTGGFFIVAIDKVAE 473 >gi|32698918|ref|NP_872349.1| putative methyltransferase NSUN6 [Homo sapiens] gi|74751440|sp|Q8TEA1|NSUN6_HUMAN RecName: Full=Putative methyltransferase NSUN6; AltName: Full=NOL1/NOP2/Sun and PUA domain-containing protein 1; AltName: Full=NOL1/NOP2/Sun domain family member 6 gi|18676896|dbj|BAB85051.1| unnamed protein product [Homo sapiens] gi|23272784|gb|AAH35778.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens] gi|55665125|emb|CAH70493.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens] gi|55665475|emb|CAH73205.1| NOL1/NOP2/Sun domain family, member 6 [Homo sapiens] gi|119606597|gb|EAW86191.1| NOL1/NOP2/Sun domain family, member 6, isoform CRA_a [Homo sapiens] gi|167887637|gb|ACA06032.1| NOL1/NOP2/Sun domain family, member 6 variant 1 [Homo sapiens] gi|167887638|gb|ACA06033.1| NOL1/NOP2/Sun domain family, member 6 variant 2 [Homo sapiens] gi|312150490|gb|ADQ31757.1| NOL1/NOP2/Sun domain family, member 6 [synthetic construct] Length = 469 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 43/270 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T ++ QRKL + +KP G++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L P ++L P LS E ++ + + Sbjct: 377 LAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTD 435 Query: 430 MD-------------------GFFAVALRR 440 MD GFF + Sbjct: 436 MDSLREARREDMLRLANKDSIGFFIAKFVK 465 >gi|160889217|ref|ZP_02070220.1| hypothetical protein BACUNI_01638 [Bacteroides uniformis ATCC 8492] gi|317479576|ref|ZP_07938703.1| NOL1/NOP2/sun family protein [Bacteroides sp. 4_1_36] gi|156861224|gb|EDO54655.1| hypothetical protein BACUNI_01638 [Bacteroides uniformis ATCC 8492] gi|316904238|gb|EFV26065.1| NOL1/NOP2/sun family protein [Bacteroides sp. 4_1_36] Length = 485 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 16/232 (6%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269 P F G ++VQ+AS+ Q + +LDLCAAPGGK+ +G+ + A Sbjct: 76 PLFHAGCYYVQEASSMFVEQALRRYVGEGPVVMLDLCAAPGGKSTHARSVLPAGSLLVAN 135 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328 +V + R + L NL + + D D+ FD +L D PCS G R+ P Sbjct: 136 EVIRNRSQVLAENLTKWGHSGVVVTNNDPADFSSLTDFFDVILTDVPCSGEGMFRKDPVA 195 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + +++ QR+++ +K GGI+++S C+ + +++EE ++ + V Sbjct: 196 VSEWSGENVEICWQRQRRIVTDIWPCLKSGGILIYSTCTYNTKENEENIRWIRDEFGAEV 255 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +++ + + ++ R P + GFF LR+ Sbjct: 256 LPLEISTDWNITGNLLSGED-FPAYRFLPHRTKGE--------GFFLAVLRK 298 >gi|126466321|ref|YP_001041430.1| ribosomal RNA methyltransferase NOP2 [Staphylothermus marinus F1] gi|126015144|gb|ABN70522.1| ribosomal RNA methyltransferase NOP2 [Staphylothermus marinus F1] Length = 344 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 139/344 (40%), Gaps = 32/344 (9%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +N ILR + E + +++A + ER G + + + +A PL + Sbjct: 8 PSINDILRDIYIEPSIISKKLASKYGYLPYMVERYIKILGFKDTVDLLNAFEKPLKPVVR 67 Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQ-DA 228 D +T +L + I+ ++S P + +G ++V D+ Sbjct: 68 TNTLLIDEDTLYERLEQLGFKLERIKWSRESYRVISAPKSPSIGATHEYLKGYYYVHRDS 127 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 ++ +PV+L VLD CAAPGGK + + +V A D+ RL+ L ++ R Sbjct: 128 ASLVPVKLLMHEFEGDVLDACAAPGGKATYIAQILNNKYEVLANDLVLYRLKSLIGHIAR 187 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + + DA K +D VL+D PCS GTI D+ + Sbjct: 188 MRIKNIVVTWSDARKLPILIDKRYDRVLLDVPCSGEGTIMFDQGRKTRTSLKDLARIVRR 247 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI------PVELVPLNSAY 397 + ++LL GI + G++ + CS+ +++E VV KVL PV+L + Sbjct: 248 EIEILLSGIDMLTKNGVLAYVTCSIAPEENEYVVAKVLEMRDDIEIVKPPVKLFDWSPWL 307 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + IRI P + M G LRR+ Sbjct: 308 KSYLGINFPNEFKYCIRIWPHI--------HSMIGLTTCLLRRI 343 >gi|309809849|ref|ZP_07703699.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 2503V10-D] gi|308169801|gb|EFO71844.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 2503V10-D] Length = 469 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQESPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQSRQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KTARFWIQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|294938750|ref|XP_002782180.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] gi|239893678|gb|EER13975.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983] Length = 649 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 71/443 (16%), Positives = 134/443 (30%), Gaps = 96/443 (21%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 V + + L + ++ D+ + + R+ ID + Sbjct: 288 DKVKQHHTPVDMFLHRYFQAHR--AINADDRAWISDHMYELFRWQGLIDH----CTPKPV 341 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 + R+ R Sbjct: 342 STRG-------RLYTY----------------------------------LTSDRWRSNA 360 Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET------- 188 + +P+ RL + G ++ + +S L V + + Sbjct: 361 QNRRLDPHIRTSMPKELFGRLADSLGTDKAVEVSSVLNERPVTFLRVNINQSSRSDMMKF 420 Query: 189 -WAHKLNAVMLPTGGIRLKELPESIV-SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + +++ T + L + ++ LP + G +QD S+ I L Sbjct: 421 LLSKEISVEKTATSPVGLVINDKKLLLDLPEYRSGAVEIQDESSQIMALQVVV------L 474 Query: 247 DLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D CA GGK + + + DV L R L R + ++ Sbjct: 475 DYCAGSGGKSLVFGPNMQNTGHLYLHDVRDSMLRDARKRLRRAGIRNYTLLYPRHPTLHK 534 Query: 304 K--KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGI 360 D VL D PCS TG +RR+PD W + + QR+++ + ++KP GG Sbjct: 535 MLLGKCDWVLCDVPCSRTGVLRRNPDAKWMYSDEKLFHFVALQREIVRNSLRYLKPKGGK 594 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+ S+ +++ +Q + R + + P+++ Sbjct: 595 LVYCTNSILDEENILQIQHLCRFHELVLSEEPMHA------------------------- 629 Query: 421 EKIDGVSSGMDGFFAVALRRLIQ 443 S GMDGFF+ L R Sbjct: 630 ---MPQSKGMDGFFSATLERKST 649 >gi|325282112|ref|YP_004254654.1| Fmu (Sun) domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313921|gb|ADY34474.1| Fmu (Sun) domain protein [Odoribacter splanchnicus DSM 20712] Length = 455 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 29/301 (9%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI-----ETWAHKLNAVMLPTGG 202 +P F+ER+ E A A + + + + + + + + Sbjct: 4 LPALFEERMRKLLP-EESEAFFAALQTEPPVSIRLNPGKPVPISRLFPDEQIGLPVSWCE 62 Query: 203 IRLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFG---TLNNLSVLDLCAAPGGK--- 255 + +L P G ++VQ+AS+ +FG + + VLDLCAAPGGK Sbjct: 63 SAYYLKSRPVFTLDPCLHSGTYYVQEASSMFLYHIFGQILPAHPVRVLDLCAAPGGKSTL 122 Query: 256 TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FDYCPKKLFDAVLVDA 314 A + SG+ + A +V + R L+ N+ + + D + K FD ++VDA Sbjct: 123 IASRLSSGSLLVANEVIRSRAGILKENMIKWGTSHVVVTNNDPADFHHLKGAFDIIVVDA 182 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ P + + ++ + Q+++L +KPGG +V+S C+ + ++E Sbjct: 183 PCSGEGMFRKDPGAIQEWNESNLQLCSERQQRILADIWPCLKPGGFLVYSTCTYNPGENE 242 Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 ++++++R +E+ PL A P + GF Sbjct: 243 AILERLIRKYGARSIEIAPLFPGIVPGNSTA------HCYHFYPHRIPGE--------GF 288 Query: 434 F 434 F Sbjct: 289 F 289 >gi|332795722|ref|YP_004457222.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1] gi|332693457|gb|AEE92924.1| Fmu (Sun) domain protein [Acidianus hospitalis W1] Length = 350 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 128/311 (41%), Gaps = 31/311 (9%) Query: 137 ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAV 196 ++ + P+W ERL G+E + I + +K ++ L + Sbjct: 53 DMTINPDPMLSFPKWIFERLYALLGEEGIKGIYN--HKTWARVNELKANVNDVIRLLESE 110 Query: 197 MLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + I F EG+ QD S+ + V +L++ + Sbjct: 111 GYKVKRTEINFLLEIESADKRISDSTAFKEGLLIPQDKSSVLAVMTLDPKPYEKILEIGS 170 Query: 251 APGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF 307 APG K QL + + + ++D+S++R+ + + +++ + ++I DA P + Sbjct: 171 APGVKSSLIQQLTRNKSFLISIDISEKRIMQQKKLMEKWGVSNVELIVADALHL-PIRKA 229 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D V +DAPCS++GTI P V+ + + + + Q +L + +K VV+ CS Sbjct: 230 DKVFIDAPCSNSGTINVDPSVVLRLNKRKLHELSSIQIGILREASK-LKT--QVVYITCS 286 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L ++ E+VV+K R+ LV + + + + W+R+ + Sbjct: 287 LFPEEGEKVVEKFGRN------LVRIPNEGHEGYKKSRV-----WLRVF-----RTYPHK 330 Query: 428 SGMDGFFAVAL 438 +GFF L Sbjct: 331 DFSEGFFIAKL 341 >gi|119719409|ref|YP_919904.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5] gi|119524529|gb|ABL77901.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5] Length = 389 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 101/240 (42%), Gaps = 24/240 (10%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 S+ F EG+ + Q + + V+L +VLD+CAAPGGKT + Sbjct: 167 YRAVSLRETRYFDEGLIYHQSLPSMVAVRLLDPQPGWTVLDMCAAPGGKTTHAAQLMGDH 226 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTG 320 +V A+D +K +++ + + RL L + + D+ K DAV++D PC++ G Sbjct: 227 GEVIAVDRTKSKVDTIMEHARRLGLKSVKGLVYDSRYISEYLDKDSVDAVIIDPPCTALG 286 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 P + + R DD++K + +QR+ L + ++ GG ++F+ C++ ++E V Sbjct: 287 V---RPKLWYERGFDDVLKLSDYQRQFLREAAKVLRRGGRLLFTTCTISPYENEFNVI-- 341 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L + L G ++ P GFF + Sbjct: 342 -----FAASYLGLKPLPLSFPPVKSGLLGTGSLQFVPH--------EHDTPGFFIALFEK 388 >gi|312874209|ref|ZP_07734243.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2052A-d] gi|311090279|gb|EFQ48689.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2052A-d] Length = 469 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIRYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|312872920|ref|ZP_07732980.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2062A-h1] gi|311091442|gb|EFQ49826.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2062A-h1] Length = 469 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|309806235|ref|ZP_07700249.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 03V1-b] gi|308167382|gb|EFO69547.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 03V1-b] Length = 469 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKKLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|291563902|emb|CBL42718.1| tRNA and rRNA cytosine-C5-methylases [butyrate-producing bacterium SS3/4] Length = 301 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 27/313 (8%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVM--- 197 +IP + +E L+ YG+E I + + L V D T L Sbjct: 1 MEQMIPGFLEEMLKKQYGEEVFAKILAGYQARRPVTLRVNPLKADRNTVEQALTGAGIAF 60 Query: 198 ----LPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + ++ E I LP + EG ++Q S+ +P SVLD+ AAP Sbjct: 61 KDVSWYEDAMIIEGAREPEIQELPIYKEGGIYLQSLSSMLPPLFLAPKAGESVLDMAAAP 120 Query: 253 GGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 GGKT Q+ A++TA + +K R EKL+ NL++ + ++ DA FD Sbjct: 121 GGKTTQMAAMTGNQAQITACEKNKARSEKLKYNLEKQGAFGTYVMVEDARKLDDFFSFDR 180 Query: 310 VLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+DAPCS +GT+ V T+ + + +SA Q +LL + + +K G +++S CS+ Sbjct: 181 ILLDAPCSGSGTVEVRDGVCRTKISKELVERSARTQEELLKKALKLLKSGHEMIYSTCSI 240 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 K+++E ++++VL+S+ ELVP+ + K + + P G + + PD L + Sbjct: 241 LKEENEGLLKRVLKSAGG--ELVPIGEEWTKELPLLPNAMP-GTLLVGPDELFE------ 291 Query: 429 GMDGFFAVALRRL 441 GFF +R+ Sbjct: 292 ---GFFVAKIRKK 301 >gi|325068809|ref|ZP_08127482.1| tRNA/rRNA cytosine-C5-methylase [Actinomyces oris K20] Length = 253 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 21/222 (9%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L+ V R LL L +RD A+ TLR R DA++ Sbjct: 2 ALEVLTRVRRDDAFANLLLPELLE---TADLDRRDAGFATALTYGTLRLQGRYDAMIAAC 58 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L R ++ +LR+ Q++ + VA +A V V+ A R A VN++LRR Sbjct: 59 TDRPLERIDPAVLDVLRLGAHQLMGMRVAQHAAVSTTVDLATTSCG-RGAATFVNAVLRR 117 Query: 131 VSREKIELLQRI------------AGISIIPEWFKERLENF-----YGKERVLAISDACI 173 +S ++ A PEW + L E + AI A Sbjct: 118 LSGRDLDSWMDELRRDAPDKTAALARTQSHPEWIVKALRQALVTHGRSDEELEAILAADN 177 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215 + + L + + A ++ P I L Sbjct: 178 ADPEVALCARPGLIAPEALAKAARKADRAHDVEPRPGRISPL 219 >gi|21355201|ref|NP_652007.1| CG6133 [Drosophila melanogaster] gi|74872722|sp|Q9W4M9|NSUN2_DROME RecName: Full=tRNA (cytosine-5-)-methyltransferase CG6133 gi|7290467|gb|AAF45921.1| CG6133 [Drosophila melanogaster] gi|16769650|gb|AAL29044.1| LD45754p [Drosophila melanogaster] Length = 746 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 ++ + +ELV + Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + E +R+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|67624589|ref|XP_668577.1| protein nucleolar (1B671) [Cryptosporidium hominis TU502] gi|54659786|gb|EAL38349.1| protein nucleolar (1B671) [Cryptosporidium hominis] Length = 681 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 69/352 (19%), Positives = 121/352 (34%), Gaps = 66/352 (18%) Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210 L F + L+ + + + + +L +L Sbjct: 80 HPLHSLLEFLLNTETEKSYNNNAIFNLKRLSKNCKL--YLTTEYSRKMLKKESQLAKLHS 137 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------- 259 IVS F G Q+ + +P VLDLC+APG K+ Q+ Sbjct: 138 FIVSQDEF--GTLSSQELVSMLPCICLDPKPGHFVLDLCSAPGSKSTQILDMILSSRDDQ 195 Query: 260 ---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL---------- 306 + D+S +RL+ L L R+ I +DA + K Sbjct: 196 LGIPCKKGVLICNDLSSKRLDTLSSRLSRIPSPNVLITCIDASFFPTFKPSKTTITSLFQ 255 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +LVD+ CS GT+R++PD+ + + Q LL + +K GG +V+S C Sbjct: 256 FDRILVDSICSGDGTLRKNPDIWTIWRPEKALSLHKKQVSLLSRAFKLLKNGGKLVYSTC 315 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--------WKSIDMAMALSPEGWIRIT-- 416 SL+ ++E V+ +LR P + P N ++ + L + +++ Sbjct: 316 SLNPIENEAVISTLLRKFPDAKLITPTNLDEREFEISKGLRTWGVHFELKEQDKLQLFDT 375 Query: 417 ----PD------------------------MLEKIDGVSSGMDGFFAVALRR 440 PD ++ + GFF +++ Sbjct: 376 LDKVPDTPFKEKLTESMFPNKEWYESDNFMKCFRVLPHRNDTGGFFFAVVQK 427 >gi|282858544|ref|ZP_06267715.1| NOL1/NOP2/sun family protein [Prevotella bivia JCVIHMP010] gi|282588669|gb|EFB93803.1| NOL1/NOP2/sun family protein [Prevotella bivia JCVIHMP010] Length = 451 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 24/315 (7%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLY---IDLTVKFDIETWAHKLNAVMLPTGGIR 204 +PE F+ N G+E + Y I L + A + Sbjct: 4 LPEAFETYTRNLMGEELYNTLIRGLNEEDYPTSIRLNPYKPCRVNLEIVKAPVPWCKDAY 63 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI-- 260 + P F G ++VQ+AS+ Q+ + LDLCAAPGGKT + Sbjct: 64 YLNTRPAFTFDPLFHAGSYYVQEASSMFIDQIIRQYITEPILALDLCAAPGGKTTCVRAA 123 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSS 318 + + A + +R + L N+ + + D+ K LFD ++ D PCS Sbjct: 124 LPKESILIANEPMCKRAQILSENILKFGHDNVAVTNNYPKDFQKTKLLFDLIIADVPCSG 183 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ + + +++ K QR ++ +KPGGI+++S C+ + ++EE V Sbjct: 184 EGMFRKDANAIEEWSEENVEKCWRLQRSIIEDIWDNLKPGGILIYSTCTFNAHENEENVA 243 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT---PDMLE----------KIDG 425 +L E +P+ +I ++ +P + + P+M + Sbjct: 244 WILSQF--NAESIPVEVKEDWNITGSLIGNPFQYKELHSSSPNMQSPICHSNFFVYRFIP 301 Query: 426 VSSGMDGFFAVALRR 440 + +G F ALR+ Sbjct: 302 GKTQGEGLFMAALRK 316 >gi|242280710|ref|YP_002992839.1| Fmu (Sun) domain protein [Desulfovibrio salexigens DSM 2638] gi|242123604|gb|ACS81300.1| Fmu (Sun) domain protein [Desulfovibrio salexigens DSM 2638] Length = 418 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 22/272 (8%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232 + D+ L A + + P G ++QD S+ + Sbjct: 11 VCSPKDVAAVEELLRAQGFEFRPEPFYSMARILEKEPFPLGESVAARFGRIYIQDRSSML 70 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 P + VLD+CAAPG KT A+L+ V A + S RL LR NL ++ Sbjct: 71 PPLMLAPKEGDVVLDMCAAPGSKTGLLARLVGRDGFVLASEPSSDRLALLRQNLRKVQAV 130 Query: 290 AEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + ++ P + + +D PCS GT+ ++P + + V QRKLL Sbjct: 131 NTATVHYESQKLPLPPSSWKTIQLDPPCSGWGTLNKNPKAMEVWKGEKTVPLVNLQRKLL 190 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + + PGG +V+S C+ + Q++EE + + EL L +I + + Sbjct: 191 TKAYELLAPGGRLVYSTCTTNVQENEEQTRFATEE--LGFELFDLPRPEGFTIADPLLPN 248 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +G +R+ S G GF+ LR+ Sbjct: 249 MDGVLRV---------DGSGGGQGFYLCGLRK 271 >gi|169867458|ref|XP_001840308.1| tRNA (cytosine-5-)-methyltransferase [Coprinopsis cinerea okayama7#130] gi|116498618|gb|EAU81513.1| tRNA (cytosine-5-)-methyltransferase [Coprinopsis cinerea okayama7#130] Length = 765 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 72/349 (20%), Positives = 117/349 (33%), Gaps = 86/349 (24%) Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + P + + D W + +L K + G Q+ Sbjct: 97 FEGQKIPPPVQIPWYPDGLAWQFNVPKKVLRKQPEFKKFHSFLVFETE---VGNISRQEG 153 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------------IVSGAKVTALDVSKRR 275 + IP + V+D+CAAPG KTAQ+ + + A D +R Sbjct: 154 VSMIPPLFLDVEPHHKVMDMCAAPGSKTAQILEALHAQDTVTSSSIPSGLLVANDSDNKR 213 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------LFDAVLVDAPCSSTGTIRRH 325 L RL A + +DA +Y K +FD +L D PCS GT+R++ Sbjct: 214 THLLIHQSARLPSPALMVTNLDASNYPSIKIPTPRGMRTLMFDRILCDVPCSGDGTMRKN 273 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVK--PGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + T D Q ++LL+ + + P +V+S CSL+ ++E VV L Sbjct: 274 IGIWKTWSPGDANGLHSLQVRILLRAMRLLNYEPSSKIVYSTCSLNPVENEAVVADALIQ 333 Query: 384 SPIPVELVPLNSAYWK-------------------------------------------- 399 +P EL+ ++ + + Sbjct: 334 NP-DFELMDVSDRFPQLIRRPGMTEWRPTTDRECETTFESYEEFIASSKVDEAMKAKLSR 392 Query: 400 ---SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 D L+ +RI P + + GFF LRR +PK Sbjct: 393 SHWPPDGVEKLNLPYCMRIYPHLQDSG--------GFFVAVLRR--KPK 431 >gi|325912131|ref|ZP_08174529.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 143-D] gi|325476081|gb|EGC79249.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 143-D] Length = 469 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIRYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|312875680|ref|ZP_07735681.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2053A-b] gi|311088934|gb|EFQ47377.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2053A-b] Length = 469 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGILVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|269859931|ref|XP_002649689.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon bieneusi H348] gi|220066884|gb|EED44354.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon bieneusi H348] Length = 528 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 114/327 (34%), Gaps = 43/327 (13%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 P + R+ R+ + + D + + Sbjct: 33 PLAYTFRIVRNAHFTRITEFIKKNFFQICQPIECVKDTYIFYKHNQISNCSYDMDLYNQF 92 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAK 265 E ++S G Q+ + IPV+L N V + CAAPG KT Q + Sbjct: 93 TEFLISNTAV--GNIQRQEIVSMIPVELLSIQKNHFVYEPCAAPGSKTKQILEKLNGTGL 150 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGT 321 + A DVSK R+ L + + I +A + K FD + D PCS GT Sbjct: 151 LVANDVSKSRVNILITESQKNNTLNLVITNDNAGSFPQSPMNKNFFDRICCDVPCSGDGT 210 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 +R++ + + Q K+L + +S +K GGI+ +S CSL+ ++E V+ + L Sbjct: 211 VRKNMSIFNDWSVKRACQLIDLQIKILQRSLSTLKEGGILTYSTCSLNPLENEYVINRAL 270 Query: 382 RSSPIPVELVPLNSAYWKSIDMAM------------------------ALSPEGWIRITP 417 + P ++P + S E IRI P Sbjct: 271 LNFPNCKIILPQEAFNLVSYTKDKTKLMIRKGIPFFQYTIDSKRYEYNDYELEKCIRIYP 330 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQP 444 + GFF +++ QP Sbjct: 331 HD--------NDTGGFFIAIIQK--QP 347 >gi|46205808|ref|ZP_00048062.2| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum magnetotacticum MS-1] Length = 150 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 9/131 (6%) Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VLVDAPC+ TGT RR+PD W + Q ++L + ++PGG +V+ CS Sbjct: 24 DRVLVDAPCTGTGTWRRNPDAKWRLRPGSLSGRIAEQAEVLDRAARLLRPGGTLVYVTCS 83 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 L ++++ V +LR S ++ V + + + + G ++ Sbjct: 84 LLPEENDAAVDGLLRRSQGAIQAVATDLGSVPGLADKVRRTSRG---------IQMSPAL 134 Query: 428 SGMDGFFAVAL 438 +G DGF+ L Sbjct: 135 TGTDGFYVATL 145 >gi|195456962|ref|XP_002075365.1| GK17644 [Drosophila willistoni] gi|194171450|gb|EDW86351.1| GK17644 [Drosophila willistoni] Length = 742 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 72/417 (17%), Positives = 129/417 (30%), Gaps = 78/417 (18%) Query: 91 AQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150 + + D + K + + + I + + +++ Sbjct: 32 YEEIKRDNPFFIK---YYNLQKICATEDEWTQFLACIRDNLPTTFRVTGFKDEAKALLKI 88 Query: 151 WFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE 210 E + L + L + + L + + Sbjct: 89 IETEMFSEYVRAVAELHQKLPEQVERPLCLPWYPNGMAYQLHLTRKDIRRSEPLFRLHNF 148 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------L 259 IV G Q+A + IP + VLD+CAAPG KTAQ Sbjct: 149 LIVETTA---GSISRQEAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHAAPEDH 205 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFD 308 + V A DV R L RL+ + D+ + FD Sbjct: 206 RIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLIRTQPDGSKSILKFD 265 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L D PCS GT+R++PD+ + Q +++ +G ++ GG +V+S CSL Sbjct: 266 KILCDVPCSGDGTLRKNPDIWMKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSL 325 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPL----------------------------------- 393 + ++E V+Q++++ S +ELV Sbjct: 326 NPIENEAVLQRIIKDSDGALELVDAGHLVPGLKYNPGMTNWKLATKDVDQVFSTFDEVPE 385 Query: 394 -------NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + D L E +R+ P + + GFF + + Q Sbjct: 386 NLHTIIRPAMFPLPSDELTKLGLEKCLRVLPHLQD--------TGGFFVAVIEKRRQ 434 >gi|289192431|ref|YP_003458372.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp. FS406-22] gi|288938881|gb|ADC69636.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus sp. FS406-22] Length = 266 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 128/271 (47%), Gaps = 31/271 (11%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFG 238 + E +L + L E SI S P + G + Q S+ IP + Sbjct: 12 NPEILKERLENKGVVLEKTFLDYAFEVKEAPFSIGSTPEYLFGYYMPQSISSMIPPVVLN 71 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 N +LD+CAAPGGKT L + + + A+++S+ R++ L+ N++R+ + II Sbjct: 72 PEENSFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISRSRVKALKSNINRMGVLNTIIIN 131 Query: 296 MDAFDYCP-----KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D Y + FD +L+DAPCS ++ +V +DI + Q++L+ Sbjct: 132 ADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV----SEEDIKYCSLRQKELIDI 187 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 GI +K G +V+S CS++ +++EEV++ +L+ VEL+ + + +K I++ Sbjct: 188 GIDLLKKDGELVYSTCSIEIEENEEVIKYILQKR-DDVELINIKTDEFKGINIKEGHIK- 245 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +R+ P FF L+++ Sbjct: 246 GTLRVFPPNEP-----------FFIAKLKKI 265 >gi|187734612|ref|YP_001876724.1| Fmu (Sun) domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187424664|gb|ACD03943.1| Fmu (Sun) domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 322 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 19/235 (8%) Query: 212 IVSLPGFAEGVWWVQDASASIP--VQLFGTLNNLSVLDLCAAPGGKTA--QLIVSGAKVT 267 SLP + G ++ D S+ LD+CAAPGGK+ Q VS + Sbjct: 77 PGSLPDYECGYYYPLDLSSVWETAPLAHLPFRPERCLDMCAAPGGKSILAQTRVSPQEHV 136 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 + +V+ +RL LR NL R D + FD +L DAPCS + + Sbjct: 137 SNEVNPKRLGILRHNLLRCGFTNLYTQRLRPDQWAELAPGCFDLILADAPCSGQSLLAKG 196 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 ++ +A QR +LL + + PGG ++++ C+ +++E V +L+ P Sbjct: 197 IPNPGCFNSSVTGGNAKRQRGILLAALRCLAPGGFLLYTTCTYAPEENERNVLYLLKRHP 256 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +L+ E R+ P G F LR+ Sbjct: 257 DL-----HTITVPELEHFRSSLTQEACYRLMPFHGAGA--------GGFTCLLRK 298 >gi|327313464|ref|YP_004328901.1| NOL1/NOP2/sun family protein [Prevotella denticola F0289] gi|326945487|gb|AEA21372.1| NOL1/NOP2/sun family protein [Prevotella denticola F0289] Length = 443 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 11/260 (4%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL- 246 +L +P + + ++S+ + + Sbjct: 53 KVNAELKPQPIPWCREGYWLAVRPSFTFDPLLHAGVYYVQEASSMFLSHALCHWVKHPVM 112 Query: 247 --DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FD 300 DLCAAPGGKT G+ + + + +R + L N+ + + Sbjct: 113 ALDLCAAPGGKTTCARTVLPEGSFLFSNEPIGKRAQILAENVQKFGHEDVAVTNNYPGDY 172 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + LFD ++ D PCS G R+ P + T ++ QR ++ +KPGGI Sbjct: 173 RKSRLLFDVIMADVPCSGEGMFRKDPQAIAEWSTQNMENCRQLQRSIIADIWDNLKPGGI 232 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++S C+ + + EE V +L+ EL+P+ + +I ++ +P R P + Sbjct: 233 LIYSTCTFNAHEDEENVAWILKEYG--AELLPVPTEKAWNITGSLIGNPMQDARAFP--V 288 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + +GFF +R+ Sbjct: 289 YRFIPGRTRGEGFFMAVIRK 308 >gi|157817079|ref|NP_001100837.1| NOL1/NOP2/Sun domain family, member 6 [Rattus norvegicus] gi|149021140|gb|EDL78747.1| NOL1/NOP2/Sun domain family, member 6 (predicted) [Rattus norvegicus] gi|171846678|gb|AAI62024.1| Nsun6 protein [Rattus norvegicus] Length = 476 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E I P F G ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPIYLSPSFDNVLSGYIFLQNLPSTVVAHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++ KL+ N L L++ DA + FD Sbjct: 260 GEVIALDKILTKVTKLKQNASLLGLHSIRAFCFDATKALKLEVMDGVDGAPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T ++ QRKLL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGLG---QRPNMACTWTLKEVTSYQPLQRKLLNVAVRLLKPGGVLVYSTCTVT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P + LS E ++ + Sbjct: 377 LAENEEQVAWALRTFPC-LQLQPQEPQIGGEGMLGAGLSLEQLKQL--QRFDPCVVPLES 433 Query: 430 MD---------------------GFFAVALRR 440 MD GFF + Sbjct: 434 MDTNSLGDARREDVIWLANKDCIGFFIAKFLK 465 >gi|115479703|ref|NP_001063445.1| Os09g0471900 [Oryza sativa Japonica Group] gi|47848376|dbj|BAD22235.1| proliferating-cell nucleolar protein-like [Oryza sativa Japonica Group] gi|113631678|dbj|BAF25359.1| Os09g0471900 [Oryza sativa Japonica Group] gi|125606042|gb|EAZ45078.1| hypothetical protein OsJ_29718 [Oryza sativa Japonica Group] Length = 880 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200 ++++ + + I + L + E + + Sbjct: 77 WDDFMNMLRKPLPATFRINASCQFYQDICSQLENDFRKSLETEVSDEHEEDAIRPLPWYP 136 Query: 201 GGIRLKELPESIV-----SLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLD 247 G + + +L GF E + Q+A + +P + +LD Sbjct: 137 GNLAWHLNFSRMQLRRNQALEGFHEFLKRENEVGNITRQEAVSMVPPLFLNVQPDHHILD 196 Query: 248 LCAAPGGKTAQ-----------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +CAAPG KT Q ++ A V A DV +R L R+ + Sbjct: 197 MCAAPGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKRMCTANLIVTNH 256 Query: 297 DAFDYC------------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +A ++ + FD VL D PCS GT+R+ PD+ + Sbjct: 257 EAQNFPGCNLAKFSSETCTDESKLQRLEFDRVLCDVPCSGDGTVRKAPDMWRKWNAGMGN 316 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q ++ ++GI +K GG +V+S CS++ ++E VV ++LR VEL+ +++ Sbjct: 317 GLHRLQVEIAMRGIGLLKVGGRIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELP 376 Query: 399 KSIDMAMALS 408 + + + Sbjct: 377 ELVRRPGLST 386 >gi|114629648|ref|XP_507683.2| PREDICTED: putative methyltransferase NSUN6 isoform 3 [Pan troglodytes] Length = 469 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 43/270 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T ++ QRKL + +KP G++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMASTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L P ++L P LS E ++ + + Sbjct: 377 LAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTD 435 Query: 430 MD-------------------GFFAVALRR 440 MD GFF + Sbjct: 436 MDSLREARREDMLRLANKDSIGFFIAKFVK 465 >gi|297808641|ref|XP_002872204.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318041|gb|EFH48463.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 514 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 89/466 (19%), Positives = 169/466 (36%), Gaps = 70/466 (15%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +S + AR ++++L ++R + S S R++ A+V TL+ L Sbjct: 39 RSALYARREAANVLRSILRGDA---ERRAVASIKSLVFSPSVRNKRATFALVCETLKHLT 95 Query: 62 RIDAV--LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 I V + VL S R++ + + IL+ D Sbjct: 96 VIKDVLEIANVLNSKWKRQEPLVYII----CYDILFGKDTPSIG---------------- 135 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 EK + + A +S + + + L+ + + P Y+ Sbjct: 136 -------------DAEKFLMRHKDALLSGLATLLVRKKVESVDQLLGLSKLNGHLKPRYV 182 Query: 179 DLT-VKFDIETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASI 232 + +K D+++ +L + + + A G ++Q ++S+ Sbjct: 183 RVNTLKMDVDSAVQELEKHYTVQRDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKASSM 242 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 VLD C+APG KT L + K+ A ++++ R+++L + Sbjct: 243 VAAALQPEAGWEVLDACSAPGNKTIHLAALMQGQGKIIACELNEERVKRLEHTIKLSGAS 302 Query: 290 AEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVL--------WTRDTDDI 337 + D PK A+L+D CS +GTI D L D+ + Sbjct: 303 NIQVFHGDFLGLNPKDPSFVKVRAILLDPSCSGSGTITDRLDHLLPSHSADNMNYDSMRL 362 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 K A FQ+K L +SF + VV+S CS+ + ++E+VV VL + + Sbjct: 363 HKLAVFQKKALAHALSFPQVE-RVVYSTCSIHQIENEDVVSSVLALASSLGFKLATPFPQ 421 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 W+ + + E +R+ P ++ GFF + + Sbjct: 422 WQRRGLPVFAGSEHLLRMDPVEDKE---------GFFIALFVKTNK 458 >gi|182413908|ref|YP_001818974.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1] gi|177841122|gb|ACB75374.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1] Length = 425 Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 133/403 (33%), Gaps = 50/403 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ +L+ + L + + L + + V V R+L +D Sbjct: 12 AAQILASISTDHR-ADLALRFYFERHRY--LRPAAKRHISHAVFVYFRWLSWLD------ 62 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 P+ + + A + + A Sbjct: 63 -----PKASPQKR--------------IEQAAKLHERFTADPASIKVEALAA-------- 95 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + +A +P +L+ L I + T+ Sbjct: 96 -----RAVPHWLASEVELPADTLRQLQRDP----ALWIRVRRGHAAEVTKTLVHCSPAVL 146 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + P + + F G + +QD ++ I + D CA Sbjct: 147 PAWLTGLEPQLSAFTFTGTQDLFRTEPFDAGEFEIQDLASQIVGHACAPQPRETWWDACA 206 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKL 306 GGK L + + + A D + RRLE L+ R ++ D P K Sbjct: 207 GEGGKMLHLADLMANKGLIWATDRNARRLETLKHRAARAQVFNYRTALWDGSARLPTKTK 266 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +LVDAPCS GT +R+P WT DD+ + A Q LL +KP G +++S C Sbjct: 267 FDGILVDAPCSGVGTWQRNPQARWTATLDDVNQLATTQLTLLNLVAGSLKPRGRLIYSVC 326 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 +L + ++ V + P +E +PL +A + A SP Sbjct: 327 TLTRSETTAVADAFSAAHP-ELEPLPLFNAAGVADPGPRAPSP 368 >gi|313673939|ref|YP_004052050.1| fmu (sun) domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940695|gb|ADR19887.1| Fmu (Sun) domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 371 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 20/232 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267 ++ L F +G + +QD ++ + L N +LDLCA GGK + + Sbjct: 155 NVRQLQEFKKGFFEIQDEASQLVFNLVAPKPNEKILDLCAGTGGKSILLQSCSFNTLDLH 214 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 + D+SK RL L+ L L + + + +D VL+DAPCS +G IRR D Sbjct: 215 SYDISKSRLAVLQKRAKILGLKVKIVEK------PSLHYYDKVLIDAPCSGSGVIRRDVD 268 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 L D D +++ QR LL + I+FV+ GG++++ CS ++++EE ++ +L Sbjct: 269 NLLRMDKDRLLELVKTQRMLLNKAINFVRKGGVIIYFTCSFLRKENEENIEYILNEYRN- 327 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L + ++ L+ + + + GMDGFF LR Sbjct: 328 --LRLVEVCDILDANIVEKLNLKSYFKTYTKYY--------GMDGFFGAVLR 369 >gi|326931128|ref|XP_003211686.1| PREDICTED: e3 ubiquitin-protein ligase TRIM50-like [Meleagris gallopavo] Length = 818 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 96/243 (39%), Gaps = 17/243 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + + G +QD ++ +P L V+D CAAPG KT+ ++ Sbjct: 542 VFPPQTDFHDNRLYTSGHIILQDKASCLPAFLLSPSAGSHVIDACAAPGNKTSHLAAILK 601 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCS 317 + + A DV +RL + L R + + + + D P+ +L+D CS Sbjct: 602 NKGHIFAFDVDTKRLATMNTMLMRAGVTSFKLAQQDFLTVDPQDPKYSKVKYILLDPSCS 661 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 +G + R + + A FQR++L + F + +S CS+ ++++E+VV Sbjct: 662 GSGMVARLSLEEAAPSAERLQALAGFQRRVLSHALRFPAVQ-RLAYSTCSVHREENEDVV 720 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 VL+ LV + W +A E +R +P GFF Sbjct: 721 HAVLQEQGSAFRLVNAFPS-WPCRGLATFPGAECCLRASPADTL--------TQGFFVAV 771 Query: 438 LRR 440 L R Sbjct: 772 LER 774 >gi|218202311|gb|EEC84738.1| hypothetical protein OsI_31727 [Oryza sativa Indica Group] Length = 880 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 42/310 (13%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200 ++++ + + I + L + E + + Sbjct: 77 WDDFMNMLRKPLPATFRINASCQFYQDICSQLENDFRKSLETEVSDEHEEDAIRPLPWYP 136 Query: 201 GGIRLKELPESIV-----SLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLD 247 G + + +L GF E + Q+A + +P + +LD Sbjct: 137 GNLAWHLNFSRMQLRRNQALEGFHEFLKRENEVGNITRQEAVSMVPPLFLNVQPDHHILD 196 Query: 248 LCAAPGGKTAQ-----------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +CAAPG KT Q ++ A V A DV +R L R+ + Sbjct: 197 MCAAPGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKRMCTANLIVTNH 256 Query: 297 DAFDYC------------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +A ++ + FD VL D PCS GT+R+ PD+ + Sbjct: 257 EAQNFPGCNLAKFSSETCTDESKLQRLEFDRVLCDVPCSGDGTVRKAPDMWRKWNAGMGN 316 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q ++ ++GI +K GG +V+S CS++ ++E VV ++LR VEL+ +++ Sbjct: 317 GLHRLQVEIAMRGIGLLKVGGRIVYSTCSMNPVENEAVVAEILRRCGDSVELLDVSNELP 376 Query: 399 KSIDMAMALS 408 + + + Sbjct: 377 ELVRRPGLST 386 >gi|194888017|ref|XP_001976848.1| EG:EG0007.9 [Drosophila erecta] gi|190648497|gb|EDV45775.1| EG:EG0007.9 [Drosophila erecta] Length = 738 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLLTTKPDGSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 ++ + +ELV + Sbjct: 338 IKEADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFDEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + + +R+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLDKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|145642283|ref|ZP_01797848.1| potassium transporter peripheral membrane component [Haemophilus influenzae R3021] gi|145273039|gb|EDK12920.1| potassium transporter peripheral membrane component [Haemophilus influenzae 22.4-21] Length = 276 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 LVN++LRR RE+ E+ + ++ PEWF ++L+ Y R + ++ P+++ + Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVKKLKKAYPNWREIIEANNQKPPMWLRV 191 Query: 181 TVKFD-IETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGFAEGVWWVQDASASIPV 234 + + +ET+ L + ++ LP F EG VQD SA Sbjct: 192 NSQKNALETYRALLEEQGISAKTSHHPNALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAA 251 Query: 235 QLFGTLN 241 L Sbjct: 252 TLLEPKM 258 >gi|261879945|ref|ZP_06006372.1| NOL1/NOP2/sun family protein [Prevotella bergensis DSM 17361] gi|270333368|gb|EFA44154.1| NOL1/NOP2/sun family protein [Prevotella bergensis DSM 17361] Length = 487 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 107/310 (34%), Gaps = 24/310 (7%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +P F+E G + + + T + LP Sbjct: 1 MDMTLPRDFEEYTRRLLGDDLYATFIKGLAQEAPTSIRLNPFKTTLCQHGPSAGLPQASP 60 Query: 204 RLKELPE-------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL--SVLDLCAAPGG 254 + P F G+++VQ+AS+ + L + +LDLCAAPGG Sbjct: 61 VPWCGQGVYLADRPNFTFDPLFHAGLYYVQEASSMFIDYILRQLIHDPVLMLDLCAAPGG 120 Query: 255 KTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAV 310 KT +G+ + A + + R L N+ + + FD V Sbjct: 121 KTTAARAALPTGSLILANEPVRLRASILSENVQKFGHPDVVVTHNFPKDYRQSGLRFDVV 180 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS G R+ + ++ K QR ++ + GG++++S C+ + Sbjct: 181 LADVPCSGEGMFRKDEGAVGEWSMQNVEKCWQLQRSIIADIWPCLAEGGLLIYSTCTFNA 240 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 ++EE V + R+ + + + + I + + + Sbjct: 241 HENEENVDWIARTLGADFVEIETPPEWGITGSL-----------IDDHPVCRFIPGKTKG 289 Query: 431 DGFFAVALRR 440 +GFF LR+ Sbjct: 290 EGFFVAVLRK 299 >gi|195477202|ref|XP_002100129.1| EG:EG0007.9 [Drosophila yakuba] gi|194187653|gb|EDX01237.1| EG:EG0007.9 [Drosophila yakuba] Length = 746 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVMDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLLTTMPDGSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 ++ + +ELV + Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTNFDEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + + +R+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLDKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|56118618|ref|NP_001008125.1| NOP2/Sun domain family, member 6 [Xenopus (Silurana) tropicalis] gi|51703758|gb|AAH81330.1| nsun6 protein [Xenopus (Silurana) tropicalis] Length = 467 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 61/270 (22%), Positives = 105/270 (38%), Gaps = 43/270 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F G ++Q+ +++ + +LD+CAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLSGYIFLQNLPSAVVSHVLNPQPGERILDMCAAPGGKTTHIATLMKDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---------------DYCPKKLFD 308 +V A+D ++EK++ N L L ++ K FD Sbjct: 260 GEVIAMDKIANKVEKIKHNASVLKLKCIKAFCFNSTKAVRDQNSPSEQGDGPPFLPKSFD 319 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+DAPCS G + P+++ ++ QRKL + ++PGG +V+S C++ Sbjct: 320 RILLDAPCSGMG---QRPNMVCPFSLKELTSYQPLQRKLFTAAVELLRPGGTLVYSTCTV 376 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPD------- 418 ++EE V L++ P +EL P + LSP+ R P Sbjct: 377 TLSENEEQVAWALKTFPC-LELQPQEPHVGGEGMLGAELSPDHLKLLQRFDPCRSEFCSV 435 Query: 419 --------MLEKIDGVSSGMDGFFAVALRR 440 I + GFF + Sbjct: 436 DLNHCSAEHSNTIPLANKDTIGFFIARFVK 465 >gi|259500608|ref|ZP_05743510.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners DSM 13335] gi|302191297|ref|ZP_07267551.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners AB-1] gi|259167992|gb|EEW52487.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners DSM 13335] Length = 469 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 117/301 (38%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNLFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|258406573|ref|YP_003199315.1| Fmu (Sun) domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798800|gb|ACV69737.1| Fmu (Sun) domain protein [Desulfohalobium retbaense DSM 5692] Length = 421 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 107/242 (44%), Gaps = 16/242 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIV 261 L E P ++ G ++QD S+ +P +VLDLCA+PG KT AQL+ Sbjct: 43 LSEGPYALGRCVAARFGRVYIQDKSSMVPPLCLAPEPGDTVLDLCASPGSKTGLLAQLVG 102 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 V A + + RLE LR N+ L L + E + F +LVDAPCS G Sbjct: 103 PQGVVLANEPNTSRLETLRANMRHLALPNVLTVSERGEDLPLAPETFSHILVDAPCSGWG 162 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T ++P+V ++ QR LL + PGG +V+S C+ + +++EE + Sbjct: 163 TAAKNPNVRQVWHDGNVHGLVELQRNLLHRAAHLAVPGGRIVYSTCTTNPRENEEQIAWA 222 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++LV + S+ A +G +++ +S GFF LR+ Sbjct: 223 VEH----LDLVVDPLSPLPSVSCAPQGLKQGVLQV--------QEEASESQGFFVALLRK 270 Query: 441 LI 442 Sbjct: 271 KT 272 >gi|212703769|ref|ZP_03311897.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098] gi|212672737|gb|EEB33220.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098] Length = 505 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 96/476 (20%), Positives = 156/476 (32%), Gaps = 89/476 (18%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 + +L +L+ L++RD+ L + TLR R+ VL VL L Sbjct: 60 QAALQQVLEDTARRQEG-GLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLPLPL 118 Query: 82 LQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140 + L V+ +L+LD +AV+ AV+ A++ AK+VN LR V R + Sbjct: 119 RRLLA-VAAYGLLFLDRLPAHAVLHTAVDLARQLYGP-GLAKVVNGSLRSVQRLGDAVQA 176 Query: 141 RI----------------------------------AGISIIPEWFKERLENFYGKERVL 166 A + W + YG E Sbjct: 177 PDFYAGPADEESFFAEDAAAAKKLRGLALPEEELRLARFHAVSRWLVALWQQAYGDEACR 236 Query: 167 AISDACISPLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLP--- 216 A+ + + L V + A + + + P Sbjct: 237 ALLARSGTRPWQALRVNASRPQAAALKQALLACAPADGPAPQAVGRWGVAFAPGKTPDAV 296 Query: 217 -------GFAEGVWWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTAQLIVSGAK 265 +G Q A++ + G + V D CA GGK+ QL+ G Sbjct: 297 QGEPLARLLEQGALSQQAAASQEVMAALGLEDWLGRGWPVWDACAGYGGKSVQLLEQGGD 356 Query: 266 V-TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 V D S RL ++ + RL L + DA + ++ D PCS G + R Sbjct: 357 VRLCTDRSFSRLRQVPGHCSRLGLALPHLALADASRPPVSRWQGGIIADVPCSGLGVLAR 416 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 PD+ + + A QR +L + ++PG + + C+L ++E+ V +L Sbjct: 417 RPDLRRRP-RTALAEHADLQRAILKALAAQLEPGAELAYITCTLHPLENEQAVDWLLAED 475 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LV TP + +G FA LRR Sbjct: 476 SGLERLVQWQ---------------------TPHDHPWL-------EGMFAARLRR 503 >gi|145642282|ref|ZP_01797847.1| sun protein [Haemophilus influenzae R3021] gi|145273038|gb|EDK12919.1| sun protein [Haemophilus influenzae 22.4-21] Length = 166 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%) Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDII----EMDAF---DYCPKKLFDAVLVDAPCSS 318 + ALDV RL+++ NL RL+ A + + D + FD +L+D+PCS+ Sbjct: 1 MIALDVESHRLKRVEENLARLNQQAIVVCGDASKPDEWLAEIGKSAAKFDRILLDSPCSA 60 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 TG IRRHPD+ W R DI + Q+K+L +KP G+++++ CS+ +++ E +Q Sbjct: 61 TGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQ 120 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + EL+ L KS + P + DGF+ L Sbjct: 121 AFLNAH-ADAELLSLPFGDDKSAV---------GFQFIPQ--------PNSGDGFYYAKL 162 Query: 439 RRLI 442 + Sbjct: 163 LKRA 166 >gi|325860336|ref|ZP_08173458.1| NOL1/NOP2/sun family protein [Prevotella denticola CRIS 18C-A] gi|325482215|gb|EGC85226.1| NOL1/NOP2/sun family protein [Prevotella denticola CRIS 18C-A] Length = 443 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 101/260 (38%), Gaps = 11/260 (4%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL- 246 +L +P + + ++S+ + + Sbjct: 53 KVNAELKPQPIPWCREGYWLAIRPSFTFDPLLHAGVYYVQEASSMFLSHALRHWVKHPVM 112 Query: 247 --DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-FD 300 DLCAAPGGKT G+ + + + +R + L N+ + + Sbjct: 113 ALDLCAAPGGKTTCARTVLPEGSFLFSNEPIGKRAQILAENVQKFGHEGVAVTNNYPGDY 172 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + LFD ++ D PCS G R+ P + T ++ QR ++ +KPGGI Sbjct: 173 RKSRLLFDVIMADVPCSGEGMFRKDPQAIAEWSTQNMENCRQLQRSIIADIWDNLKPGGI 232 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +++S C+ + + EE V +L+ EL+P+ + +I ++ +P R P + Sbjct: 233 LIYSTCTFNAHEDEENVAWILKEYG--AELLPVPTEKAWNITGSLIGNPMQDTRAFP--V 288 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + +GFF +R+ Sbjct: 289 YRFIPGRTRGEGFFMAVIRK 308 >gi|237713993|ref|ZP_04544474.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D1] gi|262407045|ref|ZP_06083594.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_22] gi|294644852|ref|ZP_06722592.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CC 2a] gi|294809779|ref|ZP_06768463.1| NOL1/NOP2/sun family protein [Bacteroides xylanisolvens SD CC 1b] gi|229445817|gb|EEO51608.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D1] gi|262355748|gb|EEZ04839.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_1_22] gi|292639790|gb|EFF58068.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CC 2a] gi|294443019|gb|EFG11802.1| NOL1/NOP2/sun family protein [Bacteroides xylanisolvens SD CC 1b] Length = 510 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 9/231 (3%) Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ G+ + A + Sbjct: 92 PLFHAGCYYVQEASSMFVEQVLRQYVTGPVKMLDLCAAPGGKSTHARSVLPEGSLLVANE 151 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 V + R + L NL + + D D+ FD +L D PCS G R+ P + Sbjct: 152 VIRNRSQILAENLMKWGHPDVVVTNNDPADFAALPSFFDVILTDVPCSGEGMFRKDPVAV 211 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 +++ QR+++ +KPGGI+++S C+ + ++ EE + + + Sbjct: 212 EEWSPENVEICWQRQRRIIGDIWDTLKPGGILIYSTCTFNTKEDEENARWIQQEYGAEPL 271 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V + + + D+ + + +G P + + +GFF A R+ Sbjct: 272 TVQVQENWNITGDL-LPDNCDGSKSSIP--VYHFFPHKTKGEGFFLAAFRK 319 >gi|25143471|ref|NP_490830.2| hypothetical protein Y48G8AL.5 [Caenorhabditis elegans] gi|20198902|gb|AAK29904.3| Hypothetical protein Y48G8AL.5 [Caenorhabditis elegans] Length = 639 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 72/341 (21%), Positives = 126/341 (36%), Gaps = 53/341 (15%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 +E+L + I +A + + + ++ + E + ++ + + I + + Sbjct: 84 REQLIHEMENRFFGKIMEAGDTAVCVPKSLPWYKEAYQTPMSRTAVRSHPILAQLHNFLV 143 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------- 264 G Q+A + IP L + VLDLCAAPG KT QL+ Sbjct: 144 TEAEL---GNLSRQEAVSMIPPLLLAPTSEHFVLDLCAAPGSKTTQLLEMIHENEENPKG 200 Query: 265 KVTALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKK-------LFDAVLVDAPC 316 V A DV +R + L R A + DA + FD VL D C Sbjct: 201 MVIANDVDMKRCYMLIHHTLKRFRTAACAVTCEDAARFPHISDSDGGLIQFDRVLADVIC 260 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GT+R++P++ D + Q + +G +K GG +V+S CS++ + E V Sbjct: 261 SGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAV 320 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMA------------------MALSPEGWIR---- 414 V ++LR S ++LV +S + +S E + Sbjct: 321 VAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMKLYKSLEDISEEKMKKVIVS 380 Query: 415 -ITP-----------DMLEKIDGVSSGMDGFFAVALRRLIQ 443 + P +I + GFF + ++ + Sbjct: 381 SLFPPTEQEAKEMNLHFTMRITPHAQDTGGFFVALIEKVSE 421 >gi|213512774|ref|NP_001133271.1| NOP2/Sun domain family, member 5 [Salmo salar] gi|209148487|gb|ACI32940.1| methyltransferase NSUN5 [Salmo salar] Length = 524 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 77/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M ++ +L V RK+ ++ L+ DS F+ + Q + A+V T +F + Sbjct: 1 MALYAKAAEILEKVERKQATVKTLV----YDSKFQNIKQ-----LFALVCETQKFSSILQ 51 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ + L ++ L +V V ++ A+ R + A++ Sbjct: 52 EIIES---TKLLKQTKIKINLAKVLVYDLVIGKGLKCGGAWKALMMKHRSRLQAALARMK 108 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +++ + + +P + + ++ + Y+ + Sbjct: 109 IKQKVSRNQDLLSSSLQHPEGDQLPRYVRVNTLKTTVEDAIDYFKR--EGFSYLGQAYRL 166 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D K L + + + G +QD ++ +P L Sbjct: 167 DDLNLKGKSFVGDLHLSDLLVFSPKTDFHDHNLYKAGHIILQDKASCLPAYLLNPPTGSH 226 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD CAAPG KT+ ++ + ++ A D+ +RL + L R + + + D Sbjct: 227 VLDACAAPGNKTSHLAAIMKNKGRLFAFDLDAKRLSTMSTLLLRAGVTCQQLANQDFLKV 286 Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLLLQGISF 354 P +L+D CS +G + + ++ D + Q L + F Sbjct: 287 DPDGPQYKDVEYILLDPSCSGSGMVCLRDEASPSQKEQDKRRLQALAAFQLHCLNHALRF 346 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 + +V+S CS+ +++E+VV L +P LVPL + + + +R Sbjct: 347 PRLQ-RLVYSTCSIHTEENEQVVAACLLQNPG-FRLVPLLQQWPERGLAPLT----KCLR 400 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + GFF L R Sbjct: 401 --------ASTTKTLTHGFFVALLER 418 >gi|288800928|ref|ZP_06406385.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332389|gb|EFC70870.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 464 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 115/309 (37%), Gaps = 22/309 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML----PTG 201 +P+ F + G+ER + + + T A A+ G Sbjct: 1 MNLPKDFITQTRELLGEERFVLLQKGLEMAPSTSIRFNPFKVTSASVSTALAPQQVPWCG 60 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQ 258 + P F G ++VQ+AS+ L LDLCAAPGGKT Sbjct: 61 EGYYLSERPNFTFDPLFHAGCYYVQEASSMFLYHVLKQVLPHQPLMALDLCAAPGGKTTL 120 Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 L + + + A + R L N+++ + A DY FD +L D Sbjct: 121 LRTLLPNESVLFANEAIYNRANILVENIEKFGHSDVIVTNNYAADYKKTDLAFDLILADV 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ D + + K QR+++ +K GI+++S C+ + ++E Sbjct: 181 PCSGEGMFRKDEDAINQWSCQYVEKCQQLQREIVSDIWHNLKENGILIYSTCTFNALENE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 E V+ ++ + ++S++ + + + R P + + G F Sbjct: 241 ENVEWIIDELGAECIDIEIDSSWNITPAL---FNKVKGYRFLPGISKGE--------GLF 289 Query: 435 AVALRRLIQ 443 LR+ + Sbjct: 290 MCVLRKTSE 298 >gi|198467800|ref|XP_001354507.2| GA19379 [Drosophila pseudoobscura pseudoobscura] gi|198146114|gb|EAL31560.2| GA19379 [Drosophila pseudoobscura pseudoobscura] Length = 729 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 69/401 (17%), Positives = 127/401 (31%), Gaps = 75/401 (18%) Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 K + + + SI + + +++ + + L Sbjct: 45 YYHLQKICHTEEEWTQFLESIRDNLPTTFRVTGFKGEAKALLNIIETQLFTEYVRAVAEL 104 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + L + + +L + + IV G Q Sbjct: 105 HQKPPEQVERPLCLPWYPNGMAYQLQLTRKDIRRSEPLYRLHNFLIVETTA---GSISRQ 161 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDVSKRR 275 +A + IP + VLD+CAAPG KTAQ + V A DV R Sbjct: 162 EAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHASPEEHKIPPGFVLANDVDNNR 221 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRR 324 L RL+ + D+ + FD +L D PCS GT+R+ Sbjct: 222 CYMLVHQAKRLNSPCLLVTNHDSSIFPNLLQSNEDGAKSVLKFDKILCDVPCSGDGTLRK 281 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 +PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++L+ + Sbjct: 282 NPDIWTKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRILKDA 341 Query: 385 PIPVELVPL------------------------------------------NSAYWKSID 402 +ELV + + + Sbjct: 342 DGALELVDAGHLVPGLKYNPGMTDWKLATKEVDTVYTSFDEVPETLHTIIRPAMFPLPAE 401 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ +RI P + + GFF + + Q Sbjct: 402 DMAKINLNKCMRILPHLQD--------TGGFFVAVIVKRRQ 434 >gi|301783221|ref|XP_002927025.1| PREDICTED: putative methyltransferase NSUN6-like [Ailuropoda melanoleuca] Length = 469 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 104/272 (38%), Gaps = 47/272 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPSYLFLQNLPSAVVTHVLNPQPGEKILDLCAAPGGKTTHIAALMRDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------FDYCPKKLFDA 309 +V ALD ++EK++ N L L + D + FD Sbjct: 260 GEVIALDKIPNKVEKIKQNALLLGLNSIKAFCFDGTKALQLDMVKDAEGKPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPCS G + P++ + ++ QRKL + ++PGG++V+S C++ Sbjct: 320 VLLDAPCSGMG---QRPNMACSWTLKEVTSYQPLQRKLFTVAVELLRPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V LR+ P ++L P M L+ E ++ + Sbjct: 377 LAENEEQVAWALRTFPY-LQLQPQEPQIGGEGMMGAGLAFEQLKQL--QRFDPSVVPLRD 433 Query: 430 MD---------------------GFFAVALRR 440 D GFF + Sbjct: 434 TDIDSLRDARVEDMIWLANKDCIGFFIAKFIK 465 >gi|281413929|ref|ZP_06245671.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] Length = 305 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 15/170 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR V+ ++ V + +L + L +RD + TLR L DA Sbjct: 64 PARRVAFGVVRSVHAEDAYANLVLPARIRQAR---LDRRDAGFATELAYGTLRGLGLYDA 120 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L + L + + LR+ Q+L + V +A +D V + + + VN Sbjct: 121 ILTRCVDRPLEKIDPPVLDALRLGAHQLLGMRVPAHAALDATVSLVRAEVG-AGASGFVN 179 Query: 126 SILRRVSREKIELLQRI-----------AGISIIPEWFKERLENFYGKER 164 ++LRR++ +E A + P W L R Sbjct: 180 AVLRRIAERPLEEWLADVAPADGGDAALAVRTSHPVWIVRALRQALAAHR 229 >gi|195174007|ref|XP_002027774.1| GL21386 [Drosophila persimilis] gi|194115446|gb|EDW37489.1| GL21386 [Drosophila persimilis] Length = 730 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 69/401 (17%), Positives = 127/401 (31%), Gaps = 75/401 (18%) Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 K + + + SI + + +++ + + L Sbjct: 45 YYHLQKICHTEEEWTQFLESIRDNLPTTFRVTGFKGEAKALLNIIETQLFTEYVRAVAEL 104 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 + L + + +L + + IV G Q Sbjct: 105 HQKPPEQVERPLCLPWYPNGMAYQLQLTRKDIRRSEPLYRLHNFLIVETTA---GSISRQ 161 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDVSKRR 275 +A + IP + VLD+CAAPG KTAQ + V A DV R Sbjct: 162 EAVSMIPPIVLDVKPTDKVLDMCAAPGSKTAQLIEALHASPEEHKIPPGFVLANDVDNNR 221 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRR 324 L RL+ + D+ + FD +L D PCS GT+R+ Sbjct: 222 CYMLVHQAKRLNSPCLLVTNHDSSIFPNLLQSNEDGAKSVLKFDKILCDVPCSGDGTLRK 281 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 +PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++L+ + Sbjct: 282 NPDIWTKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRILKDA 341 Query: 385 PIPVELVPL------------------------------------------NSAYWKSID 402 +ELV + + + Sbjct: 342 DGALELVDAGHLVPGLKYNPGMTDWKLATKEVDTVYTSFDEVPETLHTIIRPAMFPLPAE 401 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 ++ +RI P + + GFF + + Q Sbjct: 402 DMAKINLNKCMRILPHLQD--------TGGFFVAVIVKRRQ 434 >gi|242045024|ref|XP_002460383.1| hypothetical protein SORBIDRAFT_02g027340 [Sorghum bicolor] gi|241923760|gb|EER96904.1| hypothetical protein SORBIDRAFT_02g027340 [Sorghum bicolor] Length = 874 Score = 113 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 115/322 (35%), Gaps = 54/322 (16%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD---IETWAHKLNAVM 197 I+PE + + K Y D+ + + ++ ++ Sbjct: 58 YYKEQQIVPEEEWDSFMSMLRKPLPATFRINASCQFYQDICSQLENDFRKSLETEVTDEH 117 Query: 198 LPTGGIRLKELPESIV--------------SLPGFAEGV--------WWVQDASASIPVQ 235 L P ++ +L F E + Q+A + +P Sbjct: 118 EEDAIRPLPWYPGNLAWHLNFSRMQLRRNQALESFHEFLKRENEVGNITRQEAVSMVPPL 177 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-----------TALDVSKRRLEKLRCNLD 284 + +LD+CAAPG KT QL+ + A DV +R L Sbjct: 178 FLNVQPDHHILDMCAAPGSKTFQLLEMIHQSTKPGVLPNALVVANDVDVQRCNLLIHQTK 237 Query: 285 RLHLYAEDIIEMDAFDYC------------------PKKLFDAVLVDAPCSSTGTIRRHP 326 R+ + +A ++ + FD VL D PCS GT+R+ P Sbjct: 238 RMCTANLIVTNHEAQNFPGCNLAKFCSEVCMDEAKLQRLEFDRVLCDVPCSGDGTVRKAP 297 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 D+ + Q ++ ++G+ +K GG +V+S CS++ ++E VV ++LR Sbjct: 298 DMWRKWNAGMGNGLHRLQVEIAMRGMGLLKVGGRMVYSTCSMNPVENEAVVAEILRRCGD 357 Query: 387 PVELVPLNSAYWKSIDMAMALS 408 VEL+ +++ + + Sbjct: 358 SVELLDVSNELPELARRPGLST 379 >gi|332266242|ref|XP_003282123.1| PREDICTED: putative methyltransferase NSUN5-like [Nomascus leucogenys] Length = 310 Score = 113 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 23/268 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D+ K + + + + P + G +QD ++ +P L Sbjct: 14 DLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 73 Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ L + K+ A D+ +RL + L R + ++ E D Sbjct: 74 VIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAV 133 Query: 302 CPKKL----FDAVLVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF- 354 P +L+D CS +G R + + A FQ++ L ++F Sbjct: 134 SPSDPRYREVHYILLDPSCSGSGMPNRQLEEPGAGQPSPARLHALAGFQQRALCHALTFP 193 Query: 355 -VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 ++ +V+S CSL ++++E+VV+ L +P L P A W ++ E + Sbjct: 194 SLQ---RLVYSTCSLCQEENEDVVRDALHQNPGAFRLAPALPA-WPHRGLSTFPGAEHCL 249 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 R +P+ GFF + R+ Sbjct: 250 RASPETTLSG--------GFFVAIIERV 269 >gi|237720133|ref|ZP_04550614.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_2_4] gi|229450685|gb|EEO56476.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. 2_2_4] Length = 497 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 127/311 (40%), Gaps = 11/311 (3%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 + + +P F + G E ++ A + + + + H L+ Sbjct: 1 MIFAEINKRKMELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSD 58 Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPG 253 + + E + P F G ++VQ+AS+ Q+ + +LDLCAAPG Sbjct: 59 KVPWSSEGFYLEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPMKMLDLCAAPG 118 Query: 254 GKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDA 309 GK+ G+ + A +V + R + L NL + + D D+ FD Sbjct: 119 GKSTHARSVLPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDV 178 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS G R+ P + +++ QR+++ +KPGGI+++S C+ + Sbjct: 179 ILTDVPCSGEGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFN 238 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ EE + + + V + + + D+ LS +G + + + Sbjct: 239 TKEDEENARWIQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTK 295 Query: 430 MDGFFAVALRR 440 +GFF VA R+ Sbjct: 296 GEGFFLVAFRK 306 >gi|198285547|gb|ACH85312.1| NOL1/NOP2/Sun domain family member 5-like [Salmo salar] Length = 488 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 77/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M ++ +L V RK+ ++ L+ DS F+ + Q + A+V T +F + Sbjct: 1 MALYAKAAEILEKVERKQATVKTLV----YDSKFQNIKQ-----LFALVCETQKFSSILQ 51 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ + L ++ L +V V ++ A+ R + A++ Sbjct: 52 EIIES---TKLLKQTKIKINLAKVLVYDLVIGKGLKCGGAWKALMMKHRSRLQAALARMK 108 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +++ + + +P + + ++ + Y+ + Sbjct: 109 IKQKVSRNQDLLSSSLQHPEGDQLPRYVRVNTLKTTVEDAIDYFKR--EGFSYLGQAYRL 166 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D K L + + + G +QD ++ +P L Sbjct: 167 DDLNLKGKSFVGDLHLSDLLVFSPKTDFHDHNLYKAGHIILQDKASCLPAYLLNPPTGSH 226 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD CAAPG KT+ ++ + ++ A D+ +RL + L R + + + D Sbjct: 227 VLDACAAPGNKTSHLAAIMKNKGRLFAFDLDAKRLSTMSTLLLRAGVTCQQLANQDFLKV 286 Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLLLQGISF 354 P +L+D CS +G + + ++ D + Q L + F Sbjct: 287 DPDGPQYKDVEYILLDPSCSGSGMVCLRDEASPSQKEQDKRRLQALAAFQLHCLNHALRF 346 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 + +V+S CS+ +++E+VV L +P LVPL + + + +R Sbjct: 347 PRLQ-RLVYSTCSIHTEENEQVVAACLLQNPG-FRLVPLLQQWPERGLAPLT----KCLR 400 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 + GFF L R Sbjct: 401 --------ASTTKTLTHGFFVALLER 418 >gi|332662929|ref|YP_004445717.1| Fmu (Sun) domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332331743|gb|AEE48844.1| Fmu (Sun) domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 445 Score = 113 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 25/302 (8%) Query: 147 IIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 ++P F ++++ G+ A SP+ + + + N + + Sbjct: 1 MLPAAFSAQMQDQLGQAAYADFLQALSSPIPVSVRRNPLKLKHWGE-NYAGVKWHPEGVY 59 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-----SVLDLCAAPGGKTA---Q 258 + +L G + ++S+ + VLDL AAPGGK+ Sbjct: 60 LPARPVFTLDPRLHGGAYYVQEASSMLLWSVLQQTVDLNSPLKVLDLAAAPGGKSTLLAA 119 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 + G+ + + +V K R + LR NL + D+ ++ P ++ FD VL+DAPCS Sbjct: 120 ALAEGSLLISNEVIKSRYQILRENLSKWGYPNVVCTNQDSREFAPLQRQFDLVLLDAPCS 179 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P + + + A QR++L + + +KPGGI+++ C+ + ++ V Sbjct: 180 GEGLFRKDPTAVNEWSPEHVQHCAARQRRILAEASALLKPGGILIYCTCTYNDHENALNV 239 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 Q S ++L P+ ++ + + E + P +E GFF A Sbjct: 240 QW----SQENLDLAPIALSFPTEWGIQ---ARELGYQCYPHHVEGE--------GFFIAA 284 Query: 438 LR 439 LR Sbjct: 285 LR 286 >gi|329920262|ref|ZP_08277046.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 1401G] gi|328936307|gb|EGG32755.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 1401G] Length = 469 Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 10/301 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENTKKGFRLNPLKYDYTNVKYNLDHKISYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +++ + ++ +P + + I+ + +G FA L+ Sbjct: 241 LMKEKNLKIQTIPKSQGISDGHP-EWTIEKFNDIK----KAARFWLQDKIGEGQFAALLK 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|146303359|ref|YP_001190675.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM 5348] gi|145701609|gb|ABP94751.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348] Length = 354 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 129/301 (42%), Gaps = 31/301 (10%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT-----G 201 +P+W +R+ G E + + ++ + +K ++ +L Sbjct: 72 LPKWILDRVRPLLGDE---GLRNLLRRKTWVRINTLKKGLQEILDELKGKGYSFVPDRDF 128 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQ 258 ++ + I S+P F +G+ QD ++ + V + ++L++ APG K Q Sbjct: 129 NYLVEWIFPQISSIPEFRQGLLIPQDKASVMVVNVLDPKPEETILEIGGAPGTKTSLIQQ 188 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 L + + V ++D+S RR+E R L + + +++ DA + D VLVDAPCS+ Sbjct: 189 LTHNKSYVISVDISARRVEAQRRLLAKWGVSNVELVIADATEL-KVTHADKVLVDAPCSN 247 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 +GT+ P + +++K Q+ +L + +S G VV+S CSL ++ E+ V+ Sbjct: 248 SGTMNVDPSIPLRLTKAELLKLVRIQKMILKRAVSL---GVPVVYSTCSLFPEEGEKQVE 304 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + + PL+ Y KS +R P + GFF + Sbjct: 305 EF-SRYLVKITDDPLHMGYRKSKVWMRV------MRTYPHLDYSE--------GFFISKI 349 Query: 439 R 439 Sbjct: 350 E 350 >gi|224044808|ref|XP_002192436.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 [Taeniopygia guttata] Length = 469 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 107/273 (39%), Gaps = 47/273 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ + + + +LD+CAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPSHLFLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V A+D +++K++ N + L L D + FD Sbjct: 260 GEVIAMDKIANKVKKIKQNAEFLQLNCIKAFCYDGTKALLVEKTEDKQEGPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ ++ ++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMAYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L++ P ++L P LS + +++ + G Sbjct: 377 LSENEEQVAWALKTFPC-LQLHPQEPHIGGEGMKGAGLSLDQ-LKLL-QRFDPSAVTLRG 433 Query: 430 MD---------------------GFFAVALRRL 441 MD GFF +L Sbjct: 434 MDINSLQDSREDDLISLANKDCIGFFIAKFIKL 466 >gi|220905585|ref|YP_002480897.1| Fmu (Sun) domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869884|gb|ACL50219.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 462 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 18/260 (6%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + ++ A RL P + S G ++QD S+ +P +V Sbjct: 28 LRAQGYEFEAEPFSPLCRRLVAEPRPLGSSLAAFFGYIYIQDRSSMLPPLALAPAAGSAV 87 Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFD 300 LD+CA+PG KT L V + S RL LR NL + DA Sbjct: 88 LDMCASPGSKTGFLAQLVGRTGFVLGNEPSPSRLATLRANLHQCGFIHTGTCSYSGDALP 147 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 P + +L+D PCS GT+ ++P VL D + QR+LL + PGG Sbjct: 148 LRPGSWKN-ILLDPPCSGWGTVEKNPQVLKLWQGDKLDSLTSLQRRLLRHAERLLAPGGH 206 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 VVFS C+ + ++E+ V + + LV + + EG +R+ Sbjct: 207 VVFSTCTTNVAENEDQV-RFAEEH---LGLVREHINPFPGFVWEELPGGEGTLRV----- 257 Query: 421 EKIDGVSSGMDGFFAVALRR 440 DG S GF+ LR+ Sbjct: 258 ---DGARSQAQGFYVALLRK 274 >gi|302412531|ref|XP_003004098.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102] gi|261356674|gb|EEY19102.1| Nop16-like protein NOP2 [Verticillium albo-atrum VaMs.102] Length = 713 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 19/165 (11%) Query: 287 HLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + DA ++ P FD VL+DAPCS TG I + P V + D + Q+ Sbjct: 356 GARNVVVSNYDAREFPKPMGGFDRVLLDAPCSGTGVIAKDPSVKTNKTERDFMMLPHMQK 415 Query: 346 KLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS- 400 +LLL I V K GG +V+S CS+ +++E VVQ L P V+LV + K Sbjct: 416 QLLLAAIDSVNHNSKTGGFIVYSTCSVTIEENEAVVQYALSRRPN-VKLVDTGLPFGKEG 474 Query: 401 ----IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + S + R P +DGFF +++ Sbjct: 475 FTSYMGKKFDASLKLTRRYYPHTY--------NVDGFFVSKFQKV 511 >gi|294952649|ref|XP_002787395.1| hypothetical protein Pmar_PMAR028656 [Perkinsus marinus ATCC 50983] gi|239902367|gb|EER19191.1| hypothetical protein Pmar_PMAR028656 [Perkinsus marinus ATCC 50983] Length = 1042 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 38/254 (14%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----LIVSGAKVTALDVSKRRLEKLRC 281 Q+ ++ +PV + G VLD+CAAPG KT Q + V A ++ + Sbjct: 739 QEVASMVPVSVLGIEPAHEVLDMCAAPGSKTLQALDVVEKGRGMVVANELD---TRRAHI 795 Query: 282 NLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 R+ +I A FD V+ D PCS GT R++P D + Sbjct: 796 LCGRVGASEGFMVINHKAQLIPNNHQFDRVICDVPCSGDGTFRKYPVKWKHWDPSLGRRL 855 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR------------------ 382 Q ++ L+ + +K GG + +S CS++ ++E VVQ VL+ Sbjct: 856 HHTQIQIALRAFALLKVGGRMSYSTCSVNPLENEAVVQAVLKAVSPHGRLVRVELPGFRT 915 Query: 383 ----SSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITP------DMLEKIDGVSSGM 430 + VE V + + ++ + W R + P ++ + Sbjct: 916 YPGLNHWQVVEEVEDSHEVYHCEAISEGDVRKEWYRPSMWPSGSFDLSPCLRVYPHLNNT 975 Query: 431 DGFFAVALRRLIQP 444 GFF + + +P Sbjct: 976 GGFFTAVIEKTGEP 989 >gi|238854639|ref|ZP_04644969.1| putative RNA methylase [Lactobacillus jensenii 269-3] gi|282932970|ref|ZP_06338367.1| ribosomal RNA small subunit methyltransferase F [Lactobacillus jensenii 208-1] gi|313472182|ref|ZP_07812674.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii 1153] gi|238832429|gb|EEQ24736.1| putative RNA methylase [Lactobacillus jensenii 269-3] gi|239529557|gb|EEQ68558.1| NOL1/NOP2/sun family protein [Lactobacillus jensenii 1153] gi|281303005|gb|EFA95210.1| ribosomal RNA small subunit methyltransferase F [Lactobacillus jensenii 208-1] Length = 462 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 14/228 (6%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSK 273 + G + QD SA P + G VLDLCAAPGGK+ + + + A ++S Sbjct: 74 EWVNGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKSTALLSALKNEGLLVANEISA 133 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT 331 R + LR N++R + D K FDA+LVDAPCS G R++ D + Sbjct: 134 SRAKNLRENIERWGASNCLVTNEDTSQLAKKFPHFFDAILVDAPCSGEGMFRKNHDAVTY 193 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + +++ + Q+++L + + +K GG +++S C+ ++ E++ ++ + Sbjct: 194 WSQEYVLECSSRQKEILNEAVKMLKTGGSLLYSTCTYAPEEDEKICAYLVNKLGFKLVKT 253 Query: 392 PLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 +N A L+ E R P F Sbjct: 254 KVNVASAGVPAWGENLAGIEYARRFWPQDEIGEGQ--------FLAKF 293 >gi|328869535|gb|EGG17913.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum] Length = 507 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 116/277 (41%), Gaps = 22/277 (7%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 +++ ++ ++ + + T I +++ F + + + + Sbjct: 234 VSLMNRLDYYSTRGGVGIKMTERIWDCPPLNGVLTDKLFLQHLPSILTVFQMDLLPSQRE 293 Query: 240 LNNLSVLDLCAAPGGKTA------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--- 290 + ++LD+CAAPGGKT + G K+TA+D +K++ + + Sbjct: 294 KRSFNILDMCAAPGGKTTLIASLVKNNGLGDKITAIDKNKKKAKMVSDLCRVNGFDENGL 353 Query: 291 EDIIEMDAFD-----YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + D+ ++ FD +L+D PCS GT R + D+ SAC QR Sbjct: 354 VTVRAGDSKKLLIEGVFKEESFDRILLDGPCSGLGTRPRFDEATLLI---DLDNSACLQR 410 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 L+ + + PGGI+V+S C+++ ++EE V+ +L + ++LVP + + + Sbjct: 411 VLIDAAVKLLAPGGILVYSTCTINPCENEENVKYLLDNYGSFMQLVP-QTGHIGDPGLPG 469 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L ++P + + GFF ++ Sbjct: 470 ILPEN----LSPLVQRFDPSTNHETIGFFISKFKKTA 502 >gi|330804693|ref|XP_003290326.1| hypothetical protein DICPUDRAFT_6820 [Dictyostelium purpureum] gi|325079536|gb|EGC33131.1| hypothetical protein DICPUDRAFT_6820 [Dictyostelium purpureum] Length = 443 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 72/422 (17%), Positives = 143/422 (33%), Gaps = 43/422 (10%) Query: 49 VRAIVNVTLRFLPRIDAVLD--FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106 A+V TL++ +D V++ L + K L+ V + ++L+ Sbjct: 35 CYALVCETLKYKSVVDQVIEMTPNLDKEYKKNKTMKYSLMIVMIYELLFSAHQSIKGGGH 94 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWF----------KERL 156 A + + + + A I +R L I +P + + Sbjct: 95 AKKTLLQYQTQINSALARLKIQKRCKENIDLLPDHIRYPITLPRYVRVNTLQGVNAVQEA 154 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIET-----WAHKLNAVMLPTGGIRLKELPES 211 + + E ++ + +E K I + Sbjct: 155 IDQFKSEGYEMLAQQPPLTKKLIKKEDGTVEEQSNIILGEKEFYQDPDFKEILVFHHSID 214 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTA 268 + G +QD ++ +P + +D C+APG KT+ + + KV A Sbjct: 215 LHDHKMLENGHIILQDKASCLPSFILSPPKGSVCIDSCSAPGNKTSLLSAQMGNTGKVYA 274 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRR 324 ++ ++R L R + I D K + +L D CS +G + Sbjct: 275 IEKDQKRCGTLIKLTKRSLCKNIEAINDSFLNLKHDDPKFKDVEYILCDPSCSGSGILDS 334 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKV-- 380 + + + A FQ ++ +F VK V++S CS+ + ++E+VV++ Sbjct: 335 EEKLEEEKR---VKLLADFQLSIIQHAFAFPNVKK---VIYSTCSVHQVENEDVVERAIK 388 Query: 381 -LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L +V + + S + + + E IR+TP I GFF Sbjct: 389 ELNKDGEKWRVVNILPHWNHSRGLPIYKNSEYSIRMTPSKDFTI--------GFFVALFE 440 Query: 440 RL 441 ++ Sbjct: 441 KI 442 >gi|330898596|gb|EGH30015.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 161 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%) Query: 278 KLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 ++R NLDRL L A + + K F +L+DAPCS+TG IRRHPD+ TR D Sbjct: 3 RVRENLDRLGLDAELIAADARETAQWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAD 62 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 DI A Q +LL ++ GG++V++ CS ++ +V++ L + EL Sbjct: 63 DIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLARTSGARELDIAGQ 122 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 A + A ++ G DGF+ L ++ Sbjct: 123 AGQPPAGIKQA------------HGRQLLAQQGGHDGFYYAKLIKIA 157 >gi|221118960|ref|XP_002159649.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 560 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 74/318 (23%), Positives = 117/318 (36%), Gaps = 41/318 (12%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT---VKFDIETWAHKLNAVMLPTG 201 E+F E L N + +L +AC I + +K A L + Sbjct: 252 YYSYNEYFMESLINLFPGGEILEFLEACEVKRPITIRSNSLKTRRRDLAQALINRGVNLD 311 Query: 202 GIRLKELPE--------SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 I I + P + G + +Q AS+ +PV N +LD+C+APG Sbjct: 312 PIGKWSKVGLVVYDSSVPIGATPEYLAGHYMIQGASSMLPVIALSPQENERILDMCSAPG 371 Query: 254 GKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDA 309 GKT + + + + A D RL+ L N+ RL + + D + FD Sbjct: 372 GKTTYIGSLMKNTGVIVANDAKAERLKSLIGNIHRLGITNTIVCNYDGRSFPKVMGGFDR 431 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL+DAPCS TG I + V + DI + + Q++LLL I V Sbjct: 432 VLLDAPCSGTGVISKDEQVKTNKSEKDIQRCSHVQKELLLAAIDSV-------------- 477 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP-------DMLEK 422 + K V L+ K + + EG+ R ++ + Sbjct: 478 -----DAKSKXXXXXXXWVVDYALSRRNVKLVPTGIDFGKEGYTRYRDKRFHHTMNLTRR 532 Query: 423 IDGVSSGMDGFFAVALRR 440 + MDGFF L++ Sbjct: 533 FYPHTHNMDGFFVAKLKK 550 >gi|118085726|ref|XP_425980.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 469 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 47/273 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ + + + +LD+CAAPGGKT L + Sbjct: 200 EPVYLSPSFESVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD--------------AFDYCPKKLFDA 309 +V A+D +++K++ N + L L D + FD Sbjct: 260 GEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ ++ ++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMAYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGVLVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L + P ++L P L+ +++ + G G Sbjct: 377 LSENEEQVAWALETFPC-LQLQPQEPHIGGEGMRGAGLALHQ-LKLL-QRFDPSAGTLQG 433 Query: 430 MD---------------------GFFAVALRRL 441 D GFF +L Sbjct: 434 TDMESLQDCREEDLVSLANKDCIGFFIAKFMKL 466 >gi|256425440|ref|YP_003126093.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588] gi|256040348|gb|ACU63892.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588] Length = 464 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 17/233 (7%) Query: 216 PGFAEGVWWVQDASASI----PVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTA 268 P F G ++VQ+AS+ + L VLDLCAAPGGK +I + + + + Sbjct: 83 PFFHAGAYYVQEASSMFVEQVMRHVCDLDAPLKVLDLCAAPGGKSTLLQSIISADSVLVS 142 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLVDAPCSSTGTIRRHPD 327 +V K R L N+ + + D D+ FD ++VDAPCS +G RR P+ Sbjct: 143 NEVIKSRAALLGDNISKWGAANVVVTNNDPRDFGRLPGYFDVMVVDAPCSGSGLFRREPE 202 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + ++++ + Q+++L + +K GI++++ CS +Q+ EE+++ + + + Sbjct: 203 AVEEWSPENVMLCSQRQQRILADVWNTLKENGILIYATCSYSRQEDEEIMEWIQDNFSVE 262 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +P++ + A EG+ R PD ++ GFF R+ Sbjct: 263 NIAIPVSEDWHIVKTTAGPQQGEGY-RFYPDKVKGE--------GFFITCFRK 306 >gi|260911784|ref|ZP_05918356.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634110|gb|EEX52228.1| NOL1/NOP2/sun family protein [Prevotella sp. oral taxon 472 str. F0295] Length = 467 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 21/305 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI----ETWAHKLNAVMLPTG 201 ++P+ F G E + A + L + ET ++ + + Sbjct: 1 MVLPQEFTTYTRALMGDELYEKLHAALDQEPPVSLRLNPFKTINGETEVCDVDEGVAWSD 60 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN--LSVLDLCAAPGGKTAQL 259 + P F G ++VQ+AS+ + L + +++LDLCAAPGGK+ L Sbjct: 61 NGYYLSGRPNFTFDPLFHAGAYYVQEASSMFVAWIVKQLIHSPITMLDLCAAPGGKSTAL 120 Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAP 315 G+ + + +R L N+ + A FDA+L D P Sbjct: 121 RSILPQGSLLFCNEPITQRASILAENVQKFGHPGMVVTSNFAADYRKSGLQFDAILADVP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + ++ QR+++ +KPGG++++S C+ + +++E Sbjct: 181 CSGEGMFRKDAGAIAEWSETNVEHCWRLQREIIADIWPCLKPGGLLIYSTCTFNDKENER 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V+ + + +L P+ SA+ + + L R P + + G F Sbjct: 241 NVEWIAQELGAIPDLPPIPSAWNITGSICSELPAC---RFIPGVSKGE--------GLFL 289 Query: 436 VALRR 440 LR+ Sbjct: 290 CVLRK 294 >gi|50291759|ref|XP_448312.1| hypothetical protein [Candida glabrata CBS 138] gi|49527624|emb|CAG61273.1| unnamed protein product [Candida glabrata] Length = 672 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 128/382 (33%), Gaps = 49/382 (12%) Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 +V + K + F + + + L R+ G + + Sbjct: 25 WNELVRENAKWESYYKLLQLFPAEQWDEFKTTCQSPLPLTFRVTGSRKHADEVLSLFKTR 84 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 + + L + W + ++ K +V A Sbjct: 85 HLPNLTDVEFEGNKIQAPKSLPWYPNEYAWQLDVPKTVIRKNEQFAKTQRFLVVEN---A 141 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDV 271 G Q+A + IP + + +VLD+CAAPG KT Q+ V A D Sbjct: 142 VGNISRQEAVSMIPPIVLEVEPHHTVLDMCAAPGSKTTQMIEALHKDTDEPTGFVVANDA 201 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSST 319 RR L L RL+ ++ DA + + FD +L D PCS Sbjct: 202 DSRRSHMLVHQLKRLNSANLMVVNHDAQFFPRIILSDEPSKKKAQLKFDRILCDVPCSGD 261 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++ +V +T + Q +L +G+ ++ G +V+S CS++ ++E VV + Sbjct: 262 GTMRKNVNVWKDWNTQGALGLHTVQLNILDRGLHLLQNNGRLVYSTCSMNPIENEAVVAE 321 Query: 380 VLRSSPIPVELVPLNSAY-----------WKSIDMAMALSP---EGWI------------ 413 LR V LV + W ID M EG I Sbjct: 322 ALRRWGDKVRLVDCSEKLPGLIRSQGITQWPVIDRNMEERKKEDEGMINSWFPPSEEEVS 381 Query: 414 RITPDMLEKIDGVSSGMDGFFA 435 + + ++ GFF Sbjct: 382 KFHLERCMRVYPHQQNTGGFFI 403 >gi|325913845|ref|ZP_08176204.1| NOL1/NOP2/sun family protein [Xanthomonas vesicatoria ATCC 35937] gi|325539920|gb|EGD11557.1| NOL1/NOP2/sun family protein [Xanthomonas vesicatoria ATCC 35937] Length = 199 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 23/203 (11%) Query: 244 SVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMD 297 VLD CAAPGGK A ++TALDV RRLE+++ L R A D Sbjct: 12 RVLDACAAPGGKAAHLLERYPQVQLTALDVDARRLERVQQTLQRTVPNAQVGLHAADAAD 71 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + FDAVL+DAPCS+TG +RR PDVL R DDI Q +LL ++P Sbjct: 72 LAAWWDGQPFDAVLLDAPCSATGVVRRQPDVLLHRRADDIAALCALQARLLDASWRTLRP 131 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG ++++ CSL ++++ V+ L+ +P + PL +A+ Sbjct: 132 GGQLLYTTCSLLARENQAQVEAFLQRTP-DAQAQPLGAAFGHVAGPG------------- 177 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + DGFF L + Sbjct: 178 ---RQRFPGEQHCDGFFYALLLK 197 >gi|46581591|ref|YP_012399.1| NOL1/NOP2/sun family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46451014|gb|AAS97659.1| NOL1/NOP2/sun family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311235234|gb|ADP88088.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1] Length = 431 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 14/259 (5%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +E ++ RL E P + G+ ++QD S+ +P +V Sbjct: 26 LEAQGYRFIPEPFSPWSRRLVEEPRPLGGSLAAFFGLIYIQDRSSMLPPVALAPAAGSAV 85 Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301 LD+CA+PG KT L V + ++ RL LR NL L+L +A Sbjct: 86 LDMCASPGSKTGFLAQLVGETGFVLGNEPNRSRLATLRQNLFTLNLLHAATCSYPGESLP 145 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P+ +D + +D PCS GT+ R+P VL D I QR LL + ++PGG V Sbjct: 146 LPEGTWDCIQLDPPCSGWGTVERNPQVLKLWQGDKIRPLIALQRLLLAEARRLLRPGGRV 205 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+ + ++E V+ + + E VPL EG +R+ P Sbjct: 206 VYSTCTTNVDENEAQVRYAIDE--LGFEPVPLEPPPGFVFAAPELPGCEGVLRVDPQGSA 263 Query: 422 KIDGVSSGMDGFFAVALRR 440 GFF A RR Sbjct: 264 AQ--------GFFVAAFRR 274 >gi|270295988|ref|ZP_06202188.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273392|gb|EFA19254.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 485 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 115/307 (37%), Gaps = 21/307 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + G E ++ A + + + D + Sbjct: 1 MKLPSSFTDYTRALLGVEEYEKLAAALEGEQPVSIRLNEDKLPESSFSLFRSSFRHVPWS 60 Query: 206 KELPESIVSL-----PGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTA 257 L P F G ++VQ+AS+ Q + +LDLCAAPGGK+ Sbjct: 61 TAGYYLDKRLTFTFDPLFHAGCYYVQEASSMFVEQALRRYVGEGPVVMLDLCAAPGGKST 120 Query: 258 QLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVD 313 +G+ + A +V + R + L NL + + A FD +L D Sbjct: 121 HARSVLPAGSLLVANEVIRNRSQVLAENLTKWGHSGVVVTNNAPADFSSLTDFFDVILTD 180 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS G R+ P + +++ QR+++ +K GGI+++S C+ + +++ Sbjct: 181 VPCSGEGMFRKDPVAVSEWSGENVEICWQRQRRIVTDIWPCLKSGGILIYSTCTYNTKEN 240 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 EE ++ + V + +++ + + ++ R P + GF Sbjct: 241 EENIRWIRDEFGAEVLPLEISTDWNITGNLLSGED-FPAYRFLPHRTKGE--------GF 291 Query: 434 FAVALRR 440 F LR+ Sbjct: 292 FLAVLRK 298 >gi|321263532|ref|XP_003196484.1| tRNA (cytosine-5-)-methyltransferase [Cryptococcus gattii WM276] gi|317462960|gb|ADV24697.1| tRNA (cytosine-5-)-methyltransferase, putative [Cryptococcus gattii WM276] Length = 757 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 91/256 (35%), Gaps = 40/256 (15%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 ++ + F Q+A + IP + LD+CAA Sbjct: 120 WQVNAPKRVVRKTEPFKNFQRFLVGETEVGNLSRQEAVSMIPPLFLDVQPHHYCLDMCAA 179 Query: 252 PGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC- 302 PG KTA S + A D +R L R+ + DA + Sbjct: 180 PGSKTAQIIEALNPHHTTSTGLLIANDSDYKRTHMLVHQTGRMPSKGLIVTNFDASMFPA 239 Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 FD +L D PCS GT+R++ ++ D Q ++L + ++ +K Sbjct: 240 IKLADGKNLQFDRILADVPCSGDGTLRKNIEIWAKWGVTDGNSLHSLQLRILERAMNMLK 299 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 PGG +V+S CSL+ + E V+ L LV ++S + ++ Sbjct: 300 PGGRLVYSTCSLNPSEDESVIAAALLKH-TQFSLVDVSSELPE-------------LKRR 345 Query: 417 PDMLEKIDGVSSGMDG 432 P M + G DG Sbjct: 346 PGMAKWKVATQEGKDG 361 >gi|218262210|ref|ZP_03476758.1| hypothetical protein PRABACTJOHN_02432 [Parabacteroides johnsonii DSM 18315] gi|218223541|gb|EEC96191.1| hypothetical protein PRABACTJOHN_02432 [Parabacteroides johnsonii DSM 18315] Length = 467 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 17/248 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKT 256 S P F G ++VQ+AS+ Q + LDLCAAPGGK+ Sbjct: 56 WCDTGYYLPERLSFTFDPLFHAGAYYVQEASSMFLEQAVRSHVKTPVRCLDLCAAPGGKS 115 Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312 + G+ + + +V + R L N+ + + D + C FD ++ Sbjct: 116 THLAACLPEGSLLVSNEVIRSRSHILAENIAKWGNPNCIVTNNDPKEVGCLTHFFDVIIA 175 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS G R+ D ++ A R+++ + +KPGG++++S C+ + ++ Sbjct: 176 DVPCSGEGMFRKDTDSTGEWSIANVELCAGRGRRIIHDVWNALKPGGLLIYSTCTYNTEE 235 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 EE + + +P+ + + + + + + +G Sbjct: 236 DEENIHYITEELGAEALPIPIKDEWQITGPLKYN-----------HPVYRFFPHKTKGEG 284 Query: 433 FFAVALRR 440 FF ALR+ Sbjct: 285 FFLAALRK 292 >gi|71022085|ref|XP_761273.1| hypothetical protein UM05126.1 [Ustilago maydis 521] gi|46097767|gb|EAK83000.1| hypothetical protein UM05126.1 [Ustilago maydis 521] Length = 1156 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 102/285 (35%), Gaps = 59/285 (20%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 L I P F Q+A + +P + VLD+CAA Sbjct: 135 WHLNTKKNVIRKSPEFKRFHQFLVHETDVGSISRQEAVSMLPPLFLDVQPHHLVLDMCAA 194 Query: 252 PGGKTA----------------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 PG KTA + V A D +R L RL + Sbjct: 195 PGSKTAQLIESLHSPFTSGPSAYNPMPTGLVIANDSDTKRAHMLVHQSQRLPSPNLLVTN 254 Query: 296 MDAFDYCP-----------------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 +DA +Y +D +L D PCS GTIR++ + ++ V Sbjct: 255 LDASNYQSIQVPWKAADEGAEVIQTAMKYDRILADVPCSGDGTIRKNVPIWKEWTPNNAV 314 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 Q K+L++G++ ++ GG +V+S CS++ ++E VV + LR V +V +S Sbjct: 315 GLHALQLKILMRGLNQLREGGRLVYSTCSMNPIENEAVVAEALRRFEGKVRIVDCSSKLP 374 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDG-----------VSSGMDG 432 + + + R P + G ++G DG Sbjct: 375 ELVRRNGLTT----WRAAPGRGAHLFGKSKYAKQKAAKATAGTDG 415 Score = 43.3 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 8/61 (13%) Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + +L AL + +R+ P + + GFF L ++ Sbjct: 496 NELDADLASRTPKSLWPQGDEEALGMQHCMRLYPHLQD--------TGGFFVALLEKVGN 547 Query: 444 P 444 P Sbjct: 548 P 548 >gi|213025104|ref|ZP_03339551.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 153 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 68/135 (50%), Gaps = 6/135 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +++ +++ ++ + K+ ++ L+ V Q+LY V +A + VE A K + Sbjct: 56 SQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAETVEGAVSIKRPQ-L 114 Query: 121 AKLVNSILRRVSREK 135 L+N +LR+ R++ Sbjct: 115 KGLINGVLRQFQRQQ 129 >gi|160882713|ref|ZP_02063716.1| hypothetical protein BACOVA_00671 [Bacteroides ovatus ATCC 8483] gi|156111883|gb|EDO13628.1| hypothetical protein BACOVA_00671 [Bacteroides ovatus ATCC 8483] Length = 504 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 11/302 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 +P F + G E ++ A + + + + H L+ + + Sbjct: 17 KMELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSDKVPWSSEGF 74 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI-- 260 E + P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ Sbjct: 75 YLEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSV 134 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 135 LPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSG 194 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 195 EGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENAR 254 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + V + + + D+ LS +G + + + +GFF VA Sbjct: 255 WIQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAF 311 Query: 439 RR 440 R+ Sbjct: 312 RK 313 >gi|329576774|gb|EGG58267.1| putative ribosomal RNA small subunit methyltransferase B [Enterococcus faecalis TX1467] Length = 340 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 135/338 (39%), Gaps = 30/338 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K + R V+ + V + LL+ S LS++D L +V T+ Sbjct: 8 KLKRSVRYVALETIERVDKGGAYSNLLLNEMMTKS---ELSEKDGRLFTELVYGTISRKL 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ L + + ++ LL +S+ Q+LYLD V D+AV++ AVE KR + N Sbjct: 65 LLEYYLTPFVKKP-QKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAVEIGKR-RGNPGI 122 Query: 121 AKLVNSILRRVSRE-------KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 K VN +LR R + + R+A +P W E+L G+E + + Sbjct: 123 GKFVNGVLRAFQRNGAPSLAAISDSVDRLATEISMPRWLTEKLLAQLGEEETRQLGLSLF 182 Query: 174 SPLYID---LTVKFDIETWAHKLNAVMLPTGGIRLKEL-----PESIVSLPGFAEGVWWV 225 + T E +L + +L + F G + Sbjct: 183 EKSHASGRVNTRFISREEALEELQETGIAAKESQLSPYGVVAEKGYLAGSELFINGCLTI 242 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLR 280 QD S+ + + VLD CAAPGGKT + G +VT+LD+ +++ + Sbjct: 243 QDESSMLVAPAMQIEPHHRVLDACAAPGGKTTHIATFLEAEAGGRVTSLDIHAHKIKLIN 302 Query: 281 CNLDRLHLYAE----DIIEMDAFDYCPKKLFDAVLVDA 314 N RLH+ + + P + FD +LVDA Sbjct: 303 ENAQRLHVADVVQAEKLDARQVAEEFPAETFDRILVDA 340 >gi|326921692|ref|XP_003207090.1| PREDICTED: putative methyltransferase NSUN6-like [Meleagris gallopavo] Length = 469 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 47/273 (17%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ + + + +LD+CAAPGGKT L + Sbjct: 200 EPVYLSPSFDSVLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMRDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDA 309 +V A+D +++K++ N + L L D + FD Sbjct: 260 GEVIAMDKIANKVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEGPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ ++ ++ QRKL + +KPGGI+V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMAYSSTLKEVTSYQPLQRKLFTVAVKLLKPGGILVYSTCTIT 376 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++EE V L + P ++L P L+ +++ + G G Sbjct: 377 LSENEEQVAWALETFPC-LQLQPQEPHIGGEGMRGAGLALHQ-LKLL-QRFDPSAGTLQG 433 Query: 430 MD---------------------GFFAVALRRL 441 D GFF +L Sbjct: 434 TDMESLQDCREEDLVSLANKDCIGFFIAKFMKL 466 >gi|159490892|ref|XP_001703407.1| tRNA-(m5C) methyltransferase [Chlamydomonas reinhardtii] gi|158280331|gb|EDP06089.1| tRNA-(m5C) methyltransferase [Chlamydomonas reinhardtii] Length = 392 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 90/282 (31%), Gaps = 67/282 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVT 267 G Q+A + +P + VLD+CAAPG KT Q V Sbjct: 114 DAGSISRQEAVSMVPPLFLDVQPHHRVLDMCAAPGSKTFQLLEALHAGSRPGQTPPGFVM 173 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------------KKLFDAVL 311 A D R L R+ ++ DA + FD +L Sbjct: 174 ANDADFMRCNLLTHQTKRVCSPCLLVVNHDASRLPASLLPPPLPEGGKPPRLEVRFDRIL 233 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ PD+ + Q ++ L G ++ GG +V+S C+ + Sbjct: 234 ADVPCSGDGTMRKSPDIWRRWNLSGGNSLHPIQLRIALHGAKMLEVGGRMVYSTCTFNPV 293 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWK-------------------------------- 399 + E VV ++L VELV + Sbjct: 294 EDEAVVAELLVRCKGAVELVDVADCLPDLRRMPGKHAWKVKDRYRCARVRARVCMRESMF 353 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S L E +R P GFF LR++ Sbjct: 354 STPEKAQLPLERCMRFLPHH--------GDTGGFFVAVLRKV 387 >gi|124027346|ref|YP_001012666.1| methyltransferase B - rRNA small subunit [Hyperthermus butylicus DSM 5456] gi|123978040|gb|ABM80321.1| Methyltransferase B - rRNA small subunit [Hyperthermus butylicus DSM 5456] Length = 445 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 95/429 (22%), Positives = 167/429 (38%), Gaps = 42/429 (9%) Query: 36 SAFRLLSQR-DQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL 94 + + +L + D++ AI R L +D ++ + + +Q LR++V + Sbjct: 35 ARYHILGTKYDRVF-TAITYRMFRLLGIVDKIIAERIGR-IDYPTPVMQA-LRLAVM-VS 90 Query: 95 YLDVADYAVVDL--AVEQAKRDKENRHFAKLVN----SILRRVSREKIELLQRIAGISII 148 D V A+ + + L + L+ + ++ Sbjct: 91 QFDTVGDRVFSESLIENLARIIESEYPGMGELVVRLYKSLEKEPWSPSTKLEELEYRLLL 150 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYI----DLTVKFDIETWAHKLNAVMLPTG--- 201 P E L+ V + A + +K +E +L + Sbjct: 151 PRILVEELQKLLPPGEVEEFAKAVNTDRPTLGFRVNRLKASVEEIIEELQYAGVDAWPST 210 Query: 202 ---GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + + EG QD +++ L G ++D+CAAPGGKT Sbjct: 211 RIPYHVSYKGSLNYSRFKPLLEGKVVPQDEASAAAGYLLGAKPGELIVDMCAAPGGKTTH 270 Query: 259 LIV---SGAKVTALDVSKRRLEKLRCNLDRLH-LYAEDIIEMDAFDYCP--KKLFDAVLV 312 L GA++ A+DV RLE+L R + + DA + D VL+ Sbjct: 271 LAELSALGARIVAIDVFIDRLERLIELATRTGTWPSIYPVRSDAIFASRYVRDRVDRVLL 330 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PC+STG + +HP+ W + IV+ QR+LLL+ + +KPGG+++++ CS+ ++ Sbjct: 331 DPPCTSTGALAKHPEARWRLTREAIVRHVGLQRRLLLEAVKLLKPGGLLLYTVCSVLPEE 390 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 EE ++ +L + +E+VPL Y S + G +R P G G Sbjct: 391 GEENIKWLLETVKG-IEIVPLTGPYDPSPLLP------GTMRAWPH--------RHGTTG 435 Query: 433 FFAVALRRL 441 FF L R Sbjct: 436 FFYALLERK 444 >gi|293373106|ref|ZP_06619471.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CMC 3f] gi|292631925|gb|EFF50538.1| NOL1/NOP2/sun family protein [Bacteroides ovatus SD CMC 3f] Length = 487 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 11/301 (3%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + G E ++ A + + + + H L+ + + Sbjct: 1 MELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSDKVPWSSEGFY 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI--- 260 E + P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ Sbjct: 59 LEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSVL 118 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSST 319 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 119 PEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSGE 178 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 179 GMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENARW 238 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + V + + + D+ LS +G + + + +GFF VA R Sbjct: 239 IQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAFR 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|153877898|ref|ZP_02004409.1| Ribosomal RNA small subunit methyltransferase B [Beggiatoa sp. PS] gi|152065638|gb|EDN65591.1| Ribosomal RNA small subunit methyltransferase B [Beggiatoa sp. PS] Length = 207 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 21/198 (10%) Query: 240 LNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM- 296 + VLD CAAPGGK A + ALD R+ L L RL+L A+ Sbjct: 2 QEGMRVLDACAAPGGKMAHLLECCKIDTLVALDNQSARVSMLTNTLQRLNLSAKVCCANA 61 Query: 297 -DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + FD +L+D PCS +G IRRHPD+ + R DI K A Q +LL + Sbjct: 62 TKPKTWWDGHPFDRILLDVPCSGSGVIRRHPDIKYLRQPSDIAKLAEGQARLLSTLWPLL 121 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 PGG +++ CS+ +++ +Q+ L + E V + + + +I Sbjct: 122 APGGKLLYITCSVFAEENNLQIQQFLATYVDADEFV---------LTADWGHAQKYGRQI 172 Query: 416 TPDMLEKIDGVSSGMDGF 433 P + +DGF Sbjct: 173 LPG--------ENNLDGF 182 >gi|123413900|ref|XP_001304371.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3] gi|121885818|gb|EAX91441.1| NOL1/NOP2/sun family protein [Trichomonas vaginalis G3] Length = 616 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 99/266 (37%), Gaps = 53/266 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLE 277 G Q+ + IP ++ VLD CAAPG KT QLI V A D +RL Sbjct: 124 GHCHRQEFVSMIPPFFLDVHGSMGVLDTCAAPGSKTTQLIEMLDGDGYVVANDADVKRLH 183 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 + L R+ Y +I DA ++ FD VL D PC+ GTIR++ T + Sbjct: 184 PMVHQLQRVGTYRTLVINFDAQKLPDFEEKFDRVLCDVPCTGDGTIRKNIKCAETFKLNG 243 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 QRK+L +G+ K GG+ V+S CS++ + E VV VL + VE+V ++ Sbjct: 244 GTSLHSTQRKILKRGLELTKVGGLCVYSTCSMNPIEDEAVVNSVLLETGDAVEIVDVSDK 303 Query: 397 YWKSI-----------------------------------------DMAMALSPEGWIRI 415 + I E + Sbjct: 304 FPNLIRHKGLTNWPVFDAQMENEFHEYKEPSEVPHERIQYAHPTHFPQPQVPGLEHCMHF 363 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P + GFF LR++ Sbjct: 364 FPHDQDSG--------GFFVTVLRKV 381 >gi|71748890|ref|XP_827784.1| methyltransferase [Trypanosoma brucei TREU927] gi|70833168|gb|EAN78672.1| methyltransferase, putative [Trypanosoma brucei] Length = 806 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 139/388 (35%), Gaps = 48/388 (12%) Query: 97 DVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 V +D K K +R + + N + + E Sbjct: 126 GVGSKIPMDENAPLLKYYKGDRFASLFECTNGADVGKEWCEFLTCATSPLPMTLRVHRNE 185 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 R+ E + + + V + A + ++ + ++ + Sbjct: 186 RVMVSIANE---FLKNDPTVSSVLRPVVPLMPTSVALFGCSHAAYHADSYVEHICRTLHA 242 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------- 265 Q+ +++PV + G + +VLD+CAAPG KT Q + K Sbjct: 243 -----ASAVSFQEVVSALPVIVAGIQPHHTVLDMCAAPGSKTLQALDEMLKNGWNSSAVS 297 Query: 266 ---VTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFD 308 + A + + + + L L R H DA + ++ FD Sbjct: 298 SGVMVANEKDRVKATQTLPARLKRYHAPNVICTRCDAVQWPRLLCPTTQGDMHLGERRFD 357 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 V+ D PCS GT+R+ P + + + QR LL +G+ ++ GI+V+S CSL Sbjct: 358 RVICDVPCSGDGTLRKEPSLASSWSAGYVKSLLPTQRALLRRGLDLLETDGILVYSTCSL 417 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGW-IR--ITPDMLE 421 ++ EEVV L VEL+ ++S + LSP+ +R + P+ + Sbjct: 418 QPKEDEEVVCAGLELFGDAVELLDVSSILRECGVQLHSFGGLLSPDTTHLRNSVLPNSYD 477 Query: 422 -----KIDGVSSGMDGFFAVALRRLIQP 444 ++ GFF A R+L P Sbjct: 478 GRKVLRVLPHKDDTGGFFIAAFRKLSGP 505 >gi|260174015|ref|ZP_05760427.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D2] gi|315922284|ref|ZP_07918524.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D2] gi|313696159|gb|EFS32994.1| tRNA and rRNA cytosine-C5-methylase [Bacteroides sp. D2] Length = 487 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 11/301 (3%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 +P F + G E ++ A + + + + H L+ + + Sbjct: 1 MELPASFIDYTRALLGDEEYDKLAVALQQEPPVSIRL--NQLKINHSLSDKVPWSSEGFY 58 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI--- 260 E + P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ Sbjct: 59 LEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSVL 118 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSST 319 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 119 PEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSGE 178 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 179 GMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENARW 238 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + V + + + D+ LS +G + + + +GFF VA R Sbjct: 239 IQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAFR 295 Query: 440 R 440 + Sbjct: 296 K 296 >gi|224372090|ref|YP_002606462.1| NOL1/NOP2/sun family protein [Nautilia profundicola AmH] gi|223588744|gb|ACM92480.1| NOL1/NOP2/sun family protein [Nautilia profundicola AmH] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 18/240 (7%) Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA 268 + I + ++Q+ S+ I N VLDL AAPGGK+ KV+A Sbjct: 72 RKKITKSKTYTANKIYIQNLSSIISALSLDIDENDWVLDLAAAPGGKSLIFSEKAKKVSA 131 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 ++ K R +++ N D ++FD V +DAPCSS I Sbjct: 132 VEPDKNRFFRMKRNFKEHGAKNIQTYNKDGRFVYKATGEMFDKVFLDAPCSSEAHIDFDE 191 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + W + + + + Q++L++ +KPGG ++F+ C+ +++EE V +L Sbjct: 192 GITW-WNLKRVRRFSKLQKELIISAFEALKPGGEMIFATCTFAPEENEESVDFLLNKYEN 250 Query: 387 P------VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + + D +RI P GF+ +++ Sbjct: 251 AEVVDVNLPIDNIQKGIMEWEDKKYHPDVSKTVRILP---------KGAYSGFYFAKIKK 301 >gi|288802400|ref|ZP_06407839.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica D18] gi|288334928|gb|EFC73364.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica D18] Length = 467 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 105/254 (41%), Gaps = 10/254 (3%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255 + + P GV++VQ+AS+ + + LDLCAAPGGK Sbjct: 91 PWCKEGYWLDTRPNFTFDPLLHAGVYYVQEASSMFLSHVLQHFVKQPVMALDLCAAPGGK 150 Query: 256 TAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311 T +G+ + + + ++R + L N+ + + DY K FD ++ Sbjct: 151 TTCARASLPAGSFLFSNEPIRKRAQILAENVQKFGHEGVAVTNNYPRDYKKTKLGFDVII 210 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS G R+ P + ++ QR ++ +KPGGI+++S C+ + Sbjct: 211 ADVPCSGEGMFRKDPQSIEEWSLQNVENCWQLQRSIIADIWDNLKPGGILIYSTCTFNAH 270 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 + EE + +L + VP+ A+ + + +G R P + + + + Sbjct: 271 EDEENIAWILNEYDAELLSVPIEEAWNITGSLIDNPLKDG--RDFP--VYRFIPGKTRGE 326 Query: 432 GFFAVALRRLIQPK 445 G F +R+ + K Sbjct: 327 GIFMAIIRKRGENK 340 >gi|195048570|ref|XP_001992553.1| GH24818 [Drosophila grimshawi] gi|193893394|gb|EDV92260.1| GH24818 [Drosophila grimshawi] Length = 729 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/281 (20%), Positives = 98/281 (34%), Gaps = 71/281 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KT Q + V A DV Sbjct: 159 ISRQEAVSMIPPLVLNVQPTDKVLDMCAAPGSKTAQLIEALHASPDQHKIPPGFVLANDV 218 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------PKKLFDAVLVDAPCSSTGT 321 R L RL+ + D+ + FD +L D PCS GT Sbjct: 219 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVQTVDGSKSILKFDKILCDVPCSGDGT 278 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 +R++PD+ + Q +++ +G + GG +V+S CSL+ ++E V+Q+++ Sbjct: 279 LRKNPDIWLKWNLGQAYNLHGVQYRIVRRGAEMLAVGGRLVYSTCSLNPIENEAVLQRII 338 Query: 382 RSSPIPVELVPL------------------------------------------NSAYWK 399 + + ++LV S + Sbjct: 339 KDADGALQLVDASHLVPGLKYKPGMTDWKLATKEVDSVYTSFEEVPENLHTIIRPSMFPL 398 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +R+ P + + GFF L + Sbjct: 399 PPAEISGIGLDKCMRVLPHLQDSG--------GFFVAVLEK 431 >gi|301122641|ref|XP_002909047.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Phytophthora infestans T30-4] gi|262099809|gb|EEY57861.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Phytophthora infestans T30-4] Length = 637 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 58/278 (20%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALD 270 Q+A + IP + G ++ VLD+CAAPG KT+Q V A D Sbjct: 155 ITRQEAVSMIPPLVLGVESHHKVLDMCAAPGSKTSQLLESLHSQEFATGKTPTGVVVAND 214 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------KKLFDAVLVDAPCSSTGTI 322 V +R L R+ A + +A + + +FD +L DAPCS GT+ Sbjct: 215 VDLKRAYMLVHQSKRISSPALLVTCHEAQNIPFLGKDGTESEGVFDRILCDAPCSGDGTL 274 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R++P + + + Q ++ +G + +K GG + +S C+ + ++E VV +LR Sbjct: 275 RKNPLIWKNWSAKNGIALHPLQLQIAKRGAALLKVGGNMCYSTCTFNPLENEAVVADLLR 334 Query: 383 SSPIPVELVPLNSAYWKSIDMA-------------------------------------- 404 S +ELV +++ Sbjct: 335 WSKGSLELVDVSNTLPLLKRRPGISTWKVMDSQLKEYSSYENYVEENMKDKIKDKIRATM 394 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + + + + GFF L+++ Sbjct: 395 FSPTKKEAADLHLERCMRCLPQDENTGGFFICLLKKVA 432 >gi|4185892|emb|CAA21831.1| EG:EG0007.9 [Drosophila melanogaster] Length = 751 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 101/285 (35%), Gaps = 72/285 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + IP + VLD+CAAPG KTAQ + V A DV Sbjct: 158 ISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDV 217 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------KKLFDAVLVDAPCSSTG 320 R L RL+ + D+ + FD +L D PCS G Sbjct: 218 DNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILCDVPCSGDG 277 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R++PD+ + Q +++ +G ++ GG +V+S CSL+ ++E V+Q++ Sbjct: 278 TLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRI 337 Query: 381 LRSSPIPVELVPL------------------------------------------NSAYW 398 ++ + +ELV + Sbjct: 338 IKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFP 397 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 D + E +R+ P + + GFF L + Q Sbjct: 398 LPADEMAKIGLEKCLRVLPHLQDSG--------GFFVAVLEKRRQ 434 >gi|330861821|emb|CBX71993.1| hypothetical protein YEW_HY35310 [Yersinia enterocolitica W22703] Length = 131 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%) Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +C + FD +L+DAPCS+TG IRRHPD+ W R DI + A Q +++ +K GG+ Sbjct: 12 WCGDQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEAIWPKLKKGGV 71 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CS+ +++++ + L+ +LV + Sbjct: 72 MVYATCSILPEENQQQIATFLQRH-SEADLVETGTVSAPG-------------------- 110 Query: 421 EKIDGVSSGMDGFFAVALRR 440 ++ DGF+ L + Sbjct: 111 KQNLPHPEDGDGFYYAKLIK 130 >gi|332796948|ref|YP_004458448.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1] gi|332694683|gb|AEE94150.1| Fmu (Sun) domain protein [Acidianus hospitalis W1] Length = 348 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 95/254 (37%), Gaps = 41/254 (16%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L + EG +VQ ++ ++ ++D+ AA Sbjct: 132 RLPGGKFMVKVYSSLYSSPKLADTKEIKEGKIYVQGKASMYVARIIDPQPGEFIVDMTAA 191 Query: 252 PGGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLF 307 PGGK + + A++ D + +++EK++ ++++ + D+ K Sbjct: 192 PGGKLSHIYQLEPRARIIGFDHTYKKVEKMKQLFKKMNV-NVQVFVHDSRYLSELGIKDV 250 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL+D PCS+ G P V + D++ +Q++ L +K GG V++S C+ Sbjct: 251 DKVLIDPPCSALGL---RPKVYDKKTKTDLMNLHAYQKQFLNSAYEILKKGGEVIYSTCT 307 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + + ++EEVV E IR P + Sbjct: 308 VTEIENEEVVND-------------------------PRFDIEYMIRFHPQI-------- 334 Query: 428 SGMDGFFAVALRRL 441 M GFF L++ Sbjct: 335 HDMTGFFIAKLKKK 348 >gi|154494433|ref|ZP_02033753.1| hypothetical protein PARMER_03788 [Parabacteroides merdae ATCC 43184] gi|154085877|gb|EDN84922.1| hypothetical protein PARMER_03788 [Parabacteroides merdae ATCC 43184] Length = 465 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 95/248 (38%), Gaps = 16/248 (6%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKT 256 S P F G ++VQ+AS+ Q + LDLCAAPGGK+ Sbjct: 56 WCDTGYYLPERLSFTFDPLFHAGAYYVQEASSMFLEQVIRSHVKTPVRCLDLCAAPGGKS 115 Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAVLV 312 + G+ + + +V + R L N+ + + D + FD ++ Sbjct: 116 THLAACLPEGSLLVSNEVIRSRSHILAENIAKWGNPNCVVTNNDPKEIGRLTHFFDVIVA 175 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS G R+ D ++ A R+++ + +KPGG++++S C+ + ++ Sbjct: 176 DVPCSGEGMFRKDTDSTGEWSIANVALCAGRGRRIIHDIWNALKPGGLLIYSTCTYNTEE 235 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 EE V + +P W+ P R P + G Sbjct: 236 DEENVHHITEELGAEALPIPAVKDEWQITGPLKYNHP--VYRFFPHKTKGE--------G 285 Query: 433 FFAVALRR 440 FF ALR+ Sbjct: 286 FFLAALRK 293 >gi|212533619|ref|XP_002146966.1| methyltransferase (Ncl1), putative [Penicillium marneffei ATCC 18224] gi|210072330|gb|EEA26419.1| methyltransferase (Ncl1), putative [Penicillium marneffei ATCC 18224] Length = 892 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 78/243 (32%), Gaps = 72/243 (29%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP--------------KKLFDAVLV 312 A D +R L + RL+ + DA Y FD +L Sbjct: 222 IANDSDYKRAHMLIHQMKRLNSPNLIVTNHDATFYPSLKLPSSTGGKQPNVYLKFDRILA 281 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT R++P++ + Q ++L++ + +K GG VV+S CS++ + Sbjct: 282 DVPCSGDGTTRKNPNIWADWSPSSALGLHATQMRILVRALQMLKVGGRVVYSTCSMNPIE 341 Query: 373 SEEVVQKVLRSS--PIPVELVPLNSAYWKS------------------------------ 400 +E V+ + P VEL+ + + Sbjct: 342 NEAVIAAAIERCGGPDHVELIDCSKELPELKRVDGLHTWKVLDRDGRTWNSWEEVEEHRK 401 Query: 401 --------------IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL----I 442 + E +R+ P + + GFF L + Sbjct: 402 NEGITGLGRLAATMFPPKEDIHLERCMRVYPHLQD--------TGGFFITVLEKKKEIRA 453 Query: 443 QPK 445 +P+ Sbjct: 454 KPE 456 >gi|327402513|ref|YP_004343351.1| Fmu (Sun) domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318021|gb|AEA42513.1| Fmu (Sun) domain protein [Fluviicola taffensis DSM 16823] Length = 445 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 124/308 (40%), Gaps = 25/308 (8%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + +PE F +R+ N + DA + I + + + + Sbjct: 3 ETNLPEAFVKRVSNDPFLGTA--LLDALNAEQPISIRMNSLKGEPVLTNLEAIPWSKNGF 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGK---TAQ 258 S P F G ++ Q+A + + + + +LDLCAAPGGK A Sbjct: 61 YLAERPSFTLDPHFHGGRYYPQEAGSQFIDSILRNIELPLHPIILDLCAAPGGKSTLIAD 120 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCS 317 + + A +V + R + L+ NL + + D D+ K LFD +L+DAPCS Sbjct: 121 YLNGRGLLIANEVIQARSKILKENLTKWGTKNTLVSNNDPSDFEALKNLFDCILIDAPCS 180 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ + + A Q+++++ +KPGG +++S C+ ++Q++EE Sbjct: 181 GEGMFRKDLGARNEWSEESVNMCAARQKRIVMDVWDSLKPGGFLIYSTCTFNEQENEENA 240 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 +L+ + + + SA + P L+ +GFF V Sbjct: 241 SWILQQVDAQIVSLQIPSAKKGRNGIGHYA--------LPSELK--------TEGFFFVV 284 Query: 438 LRRLIQPK 445 +++ + + Sbjct: 285 IQKNGEER 292 >gi|297526997|ref|YP_003669021.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255913|gb|ADI32122.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 344 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 138/344 (40%), Gaps = 32/344 (9%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT 181 +++ILR + E + +++A + ER G + + + PL + Sbjct: 8 PSIDNILRDIYIEPSIVSRKLASKYRYLPYMIERYIKILGINETIDLLNTFEKPLKPVVR 67 Query: 182 VKF---DIETWAHKLNAVMLPTGGIRLKELPESIVSLP---------GFAEGVWWVQ-DA 228 D +T +LN + I + S P + +G ++V D+ Sbjct: 68 TNTLLIDEDTLYERLNQLGFKLERINWSRESFRVASAPKSPSIGATHEYLKGYYYVHRDS 127 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDR 285 ++ +PV+L VLD CAAPGGK + + +V A D+ RL+ L ++ R Sbjct: 128 ASLVPVKLLMHEFEGDVLDACAAPGGKATYIAQILNNKYEVLANDLVLYRLKALIGHVAR 187 Query: 286 LHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + + DA K + VL+D PCS GTI D+ + A Sbjct: 188 MRIKDIVVTWSDARKLPILIDKRYGRVLLDVPCSGEGTIMFDQGRKTRTSLKDLARIARR 247 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 + ++LL GI ++ GI+ + CS+ +++E VV KVL + P + S + Sbjct: 248 ETEILLSGIDMLEENGILAYVTCSIAPEENEYVVAKVLEMRDDVEIVKPPLKLFDWSPWL 307 Query: 404 AMALSPE------GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + IRI P + GM G LRR+ Sbjct: 308 KSYLGMDFPDEFRYCIRIWPHI--------HGMIGLTTCLLRRI 343 >gi|241152010|ref|XP_002406816.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Ixodes scapularis] gi|215493929|gb|EEC03570.1| tRNA (cytosine-5-)-methyltransferase NSUN2, putative [Ixodes scapularis] Length = 498 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 69/254 (27%) Query: 248 LCAAPGGKTAQLIVSGAK---------VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 +CAAPG KTAQL+ V A DV +R L RLH + DA Sbjct: 1 MCAAPGSKTAQLMEMLHGRVSNIPTGVVVANDVDNKRCYMLVHQAKRLHSTCCLVTNHDA 60 Query: 299 FDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 +D +L D PCS GT+R++ D+ + + Q ++ Sbjct: 61 AAMPNIYLTNKDGTQEVVKYDRILCDVPCSGDGTLRKNVDLWRKWNVANGNSIHGLQVRI 120 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA----------- 396 +G+ + GGI+V+S CSL+ + E VV +L VELV ++ Sbjct: 121 ARRGLELLAEGGILVYSTCSLNPLEDEAVVASLLLQCEGAVELVDVSGRLPGLVSRPGLT 180 Query: 397 ------------------------------YWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 + S ++A L E +RI P + Sbjct: 181 TWKVSSKDMAVYTSFDQVPEMYHTQIRAQMFPPSPEVAAQLKLERCVRILPHQQD----- 235 Query: 427 SSGMDGFFAVALRR 440 GFF L++ Sbjct: 236 ---TGGFFVAVLKK 246 >gi|330898595|gb|EGH30014.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica str. M301072PT] Length = 226 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 18/226 (7%) Query: 18 VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPR 77 ++ + SL L + + RD+ L + + T R+ PR+ + +L Sbjct: 1 MLSGKASLNSSLPTQL-----DKVEVRDRGLTQDLAFGTARWQPRLSGLAAKLLQKPFKA 55 Query: 78 KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 ++ LL V + Q+ Y + +A + V A + K+ L+N++LR V R+ Sbjct: 56 ADADVEALLLVGLYQLFYSRIPAHAAIGETVGCADKLKKP-WAKGLLNAVLRNVQRDGEA 114 Query: 138 LLQRIAGISI----IPEWFKERLENFYG-KERVLAISDACISPLYIDLTVKFD-IETWAH 191 LL + + P W ++ L+ + + + ++ P+ + + + + + + Sbjct: 115 LLIELEHDPVVRTAHPRWLQKALKAAWPEQWEAICAANNAHPPMILRVNRRHNRRDQYLE 174 Query: 192 KLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASAS 231 LN L + P + SLPGFAEG VQD +A Sbjct: 175 LLNTAGLQASACTFSQDGIVLAEPCDVRSLPGFAEGWISVQDEAAQ 220 >gi|289644511|ref|ZP_06476585.1| Fmu (Sun) domain protein [Frankia symbiont of Datisca glomerata] gi|289505673|gb|EFD26698.1| Fmu (Sun) domain protein [Frankia symbiont of Datisca glomerata] Length = 326 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 11/271 (4%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + I L+ + G L+ + F G ++Q+ S+ +P Sbjct: 54 IHRAIADLGLTLDPLDWCPDGYLLRGDKRVLSRSEVFGGGHAYIQNISSLVPALALAPAP 113 Query: 242 NLS----VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + ++DLCAAPGGKTA + + + A++ A D RLEKLR + H+ + Sbjct: 114 APAPDESIIDLCAAPGGKTAHIAALVGNEARLWANDGIAPRLEKLRAVTRQFHVRLAETS 173 Query: 295 EMDAFDYCPK--KLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQG 351 A + FD VL+DA CS G + ++ QRK+L+ Sbjct: 174 CHPAQYADKFITERFDRVLLDAQCSGEGLVDLRSSAALRYWTEQRVIDYGWLQRKMLVAA 233 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 ++PGG++V+S C+ +++E + +LR P+ V + ++ + L Sbjct: 234 CRLLRPGGVLVYSTCTFGPEENEAPLSYLLRHHPVEVCPIEVDIDGFAPDAWRPGLRHWR 293 Query: 412 WIRITPDMLEKIDGVSSG-MDGFFAVALRRL 441 P + + + +GFF LR+L Sbjct: 294 TETFHPALADARRILPGPAFEGFFVCKLRKL 324 >gi|30690149|ref|NP_851079.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|30690152|ref|NP_197990.2| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|26450438|dbj|BAC42333.1| unknown protein [Arabidopsis thaliana] gi|30793929|gb|AAP40417.1| unknown protein [Arabidopsis thaliana] gi|332006150|gb|AED93533.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|332006151|gb|AED93534.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] Length = 567 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 91/462 (19%), Positives = 168/462 (36%), Gaps = 62/462 (13%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ--RDQILVRAIVNVTLRF 59 +S + AR ++++L V+R +LS R++ A+V TL++ Sbjct: 93 RSALYARREAANILRTVLRG-----DAERRAVASIKSLVLSPSVRNKRGTFALVCETLKY 147 Query: 60 LPRIDAV--LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 L I V + VL S R++ + + IL+ D + A + R K Sbjct: 148 LTVIKDVLDIANVLNSKWKRQEPLVFIV----CYDILFGK--DTPSIGDAEKFLMRHK-E 200 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + L ++R+ +LL + P + + V + + Sbjct: 201 ALLSGLATLLVRKKVDSVDQLLGSKLTGHLKPRYVRVNTLKMDVDSAVQELEK------H 254 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 + + + + + A G ++Q ++S+ Sbjct: 255 YTVQKDETVPDLL--------------VLPPGSDLHAHRLVANGRIFLQGKASSMVAAAL 300 Query: 238 GTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 VLD C+APG KT L + K+ A ++++ R+++L + ++ Sbjct: 301 QPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIACELNEERVKRLEHTIKLSGASNIEVC 360 Query: 295 EMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVL---------WTRDTDDIVKSA 341 D PK A+L+D CS +GTI D L D+ + K A Sbjct: 361 HGDFLGLNPKDPSFAKIRAILLDPSCSGSGTITDRLDHLLPSHSEDNNMNYDSMRLHKLA 420 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 FQ+K L +SF K VV+S CS+ + ++E+VV VL + + W+ Sbjct: 421 VFQKKALAHALSFPKVE-RVVYSTCSIYQIENEDVVSSVLPLASSLGFKLATPFPQWQRR 479 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + E +R+ P ++ GFF R + Sbjct: 480 GLPVFAGSEHLLRMDPVEDKE---------GFFIALFVRANK 512 >gi|159040978|ref|YP_001540230.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis IC-167] gi|157919813|gb|ABW01240.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167] Length = 398 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 27/237 (11%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTA 268 + L + G+++ Q A +L N +++DLC+APGGK + + A + A Sbjct: 181 LRDLDEWRFGLFYEQSLPAQWVGRLIDPGPNETIIDLCSAPGGKATHVAQLSGNKAIIIA 240 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 +D S ++ ++ N RL + IE + D VL+D PCS G Sbjct: 241 VDRSWSKVRQIEGNAARLGVRLMTYIEDSRFLHLNHPEFIGKADKVLIDPPCSDAGV--- 297 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P + + D++ +QR+ + S +KP G +++S C+L ++E+ V+ + Sbjct: 298 RPKLYYRLTMTDLINLVAYQRQFIKVAYSLLKPNGSLIYSTCTLPPMENEDNVKWA---T 354 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L +N + R + + GFF L +L Sbjct: 355 ELGFRLEYVNVPAGQ--------------RAFDGVSRRFHPHIQDTPGFFMAKLTKL 397 >gi|311265698|ref|XP_003130779.1| PREDICTED: putative methyltransferase NSUN6-like [Sus scrofa] Length = 472 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 45/270 (16%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSG 263 E + P F + G ++Q+ +++ + +LDLCAAPGGKT + Sbjct: 200 EPVYLSPSFDDVLPGYLFLQNLPSAVVTHVLDPQPGERILDLCAAPGGKTTHIAARMRDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF------------DYCPKKLFDAVL 311 +V ALD ++EK++ N L L + D + FD +L Sbjct: 260 GEVIALDKIANKVEKIKQNALLLGLNSIRAFCFDGTKALKLDIDTEGEPPFLPESFDRIL 319 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 +DAPCS G + P++ T ++ QRKL + +KPGG++V+S C++ Sbjct: 320 LDAPCSGMG---QRPNMACTWTLKEVTSYQPLQRKLFTVAVELLKPGGVLVYSTCTVTLA 376 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++EE V L + P ++L + + M L+ E ++ + S D Sbjct: 377 ENEEQVAWALGTFPC-LQLQRQDPQIGGAGMMGAGLTSEQLKQL--QRFDPSVVPSWDTD 433 Query: 432 ---------------------GFFAVALRR 440 GFF + Sbjct: 434 IDSLRDTRTEDMIRLANQDCIGFFIAKFVK 463 >gi|301095335|ref|XP_002896768.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein [Phytophthora infestans T30-4] gi|262108651|gb|EEY66703.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein [Phytophthora infestans T30-4] Length = 653 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 68/289 (23%), Positives = 107/289 (37%), Gaps = 67/289 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI----------VSGAKVTA 268 AEG Q+A + IP L + VLD+CAAPG KT Q++ + V A Sbjct: 133 AEGNLSRQEAVSMIPALLLDVHPHHHVLDMCAAPGSKTTQIMEALISDKVSINTQGFVVA 192 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------KKLFDAVLVDAPCSS 318 D +++R L L RL L + + + +FD VL D PCS Sbjct: 193 NDANEKRGYLLVHQLQRLGLDNFVVTCHEGQKFPGLYNSNVELQRTNVFDRVLCDVPCSG 252 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG--IVVFSNCSLDKQDSEEV 376 GTIR++ ++ + Q L L+ + ++ G I+ +S CSL+ ++E V Sbjct: 253 DGTIRKNRNLWGRWAPGSALTLHPIQIDLGLRAAALLRDDGDSIMTYSTCSLNPVENEAV 312 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMA---------MALSPEGWIR------------- 414 V ++LR + +ELV + I A + +G R Sbjct: 313 VAELLRRADGALELVDCSEKLSGLITRPGVTYWSVAWQARTAKGEARAPLQWFDQYESVP 372 Query: 415 ----------------------ITPDMLEKIDGVSSGMDGFFAVALRRL 441 I P ++ GFF LR++ Sbjct: 373 DFLQGSRILRSMFPPADEEIQKILP-RCLRLFPTDQNTGGFFVAVLRKV 420 >gi|126341505|ref|XP_001377237.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 467 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 58/270 (21%), Positives = 101/270 (37%), Gaps = 45/270 (16%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ + + + +LD+CAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLSSSLFLQNLPSVVVSHVLNPQPGEKILDMCAAPGGKTTHIAALMRDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE------------MDAFDYCPKKLFDAVL 311 +V A+D ++EK++ N L L + FD +L Sbjct: 260 GEVIAMDKIPSKVEKIKQNAALLQLNCIRAFCCNGTKALGKIEDGQGGPPFSPESFDRIL 319 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 +DAPCS G + P++ +T +++ QRKL + +KPGG++V+S C++ Sbjct: 320 LDAPCSGMG---QRPNMTYTWTLKEVMSYQPLQRKLFTVAVQLLKPGGVLVYSTCTITLA 376 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++EE V L + P ++L M LS E ++ + D Sbjct: 377 ENEEQVAWALTAFPC-LQLQSQEPHIGGEGMMGAGLSLEQLKQL--QRFDPSIIPLKSTD 433 Query: 432 ---------------------GFFAVALRR 440 GFF + Sbjct: 434 ITSIREARREDMIWLANKDCIGFFIAKFVK 463 >gi|256830872|ref|YP_003159600.1| Fmu (Sun) domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256580048|gb|ACU91184.1| Fmu (Sun) domain protein [Desulfomicrobium baculatum DSM 4028] Length = 414 Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 66/277 (23%), Positives = 109/277 (39%), Gaps = 25/277 (9%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232 + K I+ L A +L ++ + P G ++QD S+ + Sbjct: 11 VCAKDQIQDVEALLQAEGFRFEPQPCYDLARTLTAEPMPLGRSIAAKFGYIYIQDKSSML 70 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 P + VLD CA+PG KT L V A + S RL LR N+ L Y Sbjct: 71 PPLALAPASGDRVLDFCASPGSKTGILSSLVGPSGLVLANEPSPDRLATLRVNMRHLGCY 130 Query: 290 AEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + + +L+DAPCS GT+ ++P + QR+LL Sbjct: 131 NVATCKYEGQSLPLQDDSWPHILLDAPCSGWGTVDKNPKAAQMWAGEKTAPLETLQRELL 190 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + + PGG +++S C+ + +++E+ V+ + + LVP + A + Sbjct: 191 TKAAGLLAPGGRLLYSTCTTNVRENEDQVRFAMEH----LGLVPEPLTEFPGFKFAPS-- 244 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 P L +DG S GFF AL + Q + Sbjct: 245 -------LPGCLL-VDGEGSLAQGFFLAALGKPGQQE 273 >gi|323342019|ref|ZP_08082252.1| NOL1/NOP2/sun family protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464444|gb|EFY09637.1| NOL1/NOP2/sun family protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 432 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 124/299 (41%), Gaps = 19/299 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 + +++ L +G+ + I A L + I + Sbjct: 1 MKLTADYQKMLIESFGEPQYQKIIAAYQMDSVHGLRLNPLKPCVLPFSGIASRIDPTILI 60 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SG 263 + V+ P G +++QD +A+ PV N VLDLCAAPGGKT Q++ + Sbjct: 61 PDDYAKTVTHPLSHAGCYYIQDPTATTPVSALRVEPNDIVLDLCAAPGGKTTQILSALTT 120 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGT 321 + + ++ +R KL+ N DR + +MD + K FD VL+DAPCS G Sbjct: 121 GFLISNEIDSKRNIKLQHNYDRWGSERGVVTQMDTDELVDKLNNTFDKVLLDAPCSGEGL 180 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 RR PD + ++ + Q++LL GG++V+S C+L+ ++E+V+ L Sbjct: 181 YRRTPDFALEFKNSEPLRFSRLQKQLLENAFRACVDGGVIVYSTCTLNFHENEQVILSFL 240 Query: 382 RSSP-IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 P +E V L+ + + ++ R P +G F +R Sbjct: 241 EEHPKCQLEPVDLSEKSSGYLGLGEQVA-----RYFPSK---------DGEGHFIARIR 285 >gi|332702541|ref|ZP_08422629.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552690|gb|EGJ49734.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 421 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 15/243 (6%) Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQ 258 RL P ++ G ++QD S+ +P L +VLD+CA+PG KT AQ Sbjct: 37 CRRLTVEPFALGESLAAFFGYVYIQDRSSMLPPLLLNPPEGAAVLDMCASPGSKTGLLAQ 96 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCS 317 L+ G V + S+ RLE LR NL R++L + + + +D PCS Sbjct: 97 LVGQGGFVLGNEPSRDRLETLRQNLRRMNLLQAATCTYSGERLPLAARSWKCIQLDPPCS 156 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 GT+ ++P V+ D + QR+LL V PGG V++S C+ + +++EE Sbjct: 157 GWGTVDKNPQVMTLWSPDKVEPLVRLQRELLRTAAELVAPGGRVLYSTCTTNVRENEEQT 216 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + +E+ PL+ S + A+ G +R+ D V+SG GFF Sbjct: 217 AWAAQE--LELEIRPLDPPAGFSFEPALG-GLAGVLRV--------DQVASGAQGFFLAC 265 Query: 438 LRR 440 L + Sbjct: 266 LEK 268 >gi|47221584|emb|CAF97849.1| unnamed protein product [Tetraodon nigroviridis] Length = 448 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 10/197 (5%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTAL 269 + P + G + +Q AS+ +PV VLD+ +APGGKT + + + + A Sbjct: 94 SATPEYLSGQYMLQGASSFLPVMALSPQEGELVLDMSSAPGGKTTYIAQLMRNTGVIVAN 153 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDV 328 D + RL+ + N+ RL + + D + FD VL+DAPCS TG I + P V Sbjct: 154 DANAERLKSVVGNIHRLGVTNTVVCNYDGRQFPKVMGGFDRVLLDAPCSGTGVIAKDPAV 213 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVK----PGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 ++D DI +SA Q++L+L I + GG +V+ CS+ +++E VV L+ Sbjct: 214 KTSKDDADINRSAHLQKELILSAIDSINAESPTGGYLVYCTCSVMVEENEWVVDYALKKR 273 Query: 385 PIPVELVPLNSAYWKSI 401 V+LVP + K Sbjct: 274 --NVKLVPTGLDFGKEG 288 Score = 43.0 bits (99), Expect = 0.090, Method: Composition-based stats. Identities = 7/23 (30%), Positives = 11/23 (47%) Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + + S MDGFF L++ Sbjct: 418 QLSRRFYPHSHNMDGFFVAKLKK 440 >gi|300121772|emb|CBK22346.2| unnamed protein product [Blastocystis hominis] Length = 437 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 58/292 (19%), Positives = 101/292 (34%), Gaps = 51/292 (17%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + P FA+ +A + IP + VLDLCAA Sbjct: 114 WEINVGRNKLRKSPLFADLHSYLVEMTQAGVISRLEAVSMIPPLFLDVHPDHLVLDLCAA 173 Query: 252 PGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------P 303 PG KT Q ++ + A D + +R L + A + Sbjct: 174 PGSKTQQLLEMLKSGVIVANDANPQRALMLVNQTSHAPTTKLVVTSYLAQQFPVPRNAGK 233 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FD +L D PCS GT+R+ P++ T Q +L + + +K GG +V+ Sbjct: 234 PVQFDRILCDVPCSGDGTLRKSPEIWSTWSLRYAQSLHSLQLSILARAVKLLKIGGKIVY 293 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW---KSIDMAMALSPEGWIRI----- 415 S CSL+ ++E VV ++ R + V LV ++ + + ++ + + R+ Sbjct: 294 STCSLNPVENEAVVLEIWRQAEGAVRLVDVSRQFPDLSRGNGLSSWVVTDSENRVIPAGS 353 Query: 416 ------------------------TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 P+ + GFF L + + Sbjct: 354 EASTEHSTVKRSFFPPNEEERAAAHPEFAMRFLPHVQNRGGFFVCVLEKTAE 405 >gi|332877814|ref|ZP_08445552.1| NOL1/NOP2/sun family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684109|gb|EGJ56968.1| NOL1/NOP2/sun family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 503 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 120/318 (37%), Gaps = 19/318 (5%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKL--------NAV 196 IP+ FK+ G ER + A + + + W+ L +V Sbjct: 3 RPDIPQEFKDYARRLLGAERYARFAQALDEDPSVSVRLNPFKAVWSGLLAEDLNGVDGSV 62 Query: 197 MLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGG 254 +G P F G ++VQ+A++ Q + LDLCAAPGG Sbjct: 63 PWASGEGCYLSERPPFTFDPLFHAGAYYVQEAASMFLGQILRRYVTRPVVALDLCAAPGG 122 Query: 255 KTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY-CPKKLFDAV 310 K+ + G+ + + + K R + L NL + + D+ FD + Sbjct: 123 KSTHIRSCLPEGSLLVSNEPVKARAQVLLENLTKWGHPDVIVTNSYPKDFARLPDFFDLL 182 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 + D PCS G R+ D + + + QR++L +KPGG++V+S C+L+ Sbjct: 183 VTDVPCSGEGMFRKEEDAVTGWSMEAVRMCRDRQREILRDVWLSLKPGGLLVYSTCTLNA 242 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM---AMALSPEGWIRITPDMLEKIDGVS 427 + EE V + + + + ++ + ++ P + Sbjct: 243 LEDEENVAWIAEELGAEILPFDVEPGWGVVGNLLAVSSVKDTAKAEKLFP--VAHFIPGF 300 Query: 428 SGMDGFFAVALRRLIQPK 445 + +GFF LR+ + + Sbjct: 301 TRGEGFFLAVLRKNGEEE 318 >gi|195397375|ref|XP_002057304.1| GJ16427 [Drosophila virilis] gi|194147071|gb|EDW62790.1| GJ16427 [Drosophila virilis] Length = 725 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 66/392 (16%), Positives = 122/392 (31%), Gaps = 76/392 (19%) Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 + + + SI + + +++ + + L A Sbjct: 53 CANEEEWTQFLASIRDNLPTTFRVTGFKDEAKALLNIIKTQLFTEYVRAVAELHELPAEQ 112 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + L + + L + + IV G Q+A + IP Sbjct: 113 VERPLCLPWYPNGLAYQLHLTRKDIRRSEPLFRLHNFLIVETKA---GSISRQEAVSMIP 169 Query: 234 VQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSKRRLEKLRCN 282 + VLD+CAAPG KT Q + V A DV R L Sbjct: 170 PLVLDVQPTDKVLDMCAAPGSKTAQLIEALHAAPEQHKIPPGFVLANDVDNNRCYMLVHQ 229 Query: 283 LDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 RL+ + D+ + FD +L D PCS GT+R++PD+ Sbjct: 230 AKRLNSPCLLVTNHDSSFFPNLLQTDAATGNKSILKFDKILCDVPCSGDGTLRKNPDIWM 289 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + Q +++ +G + GG +V+S CSL+ ++E V+Q++++ + +EL Sbjct: 290 KWNLAQAYNLHGVQYRIVRRGAEMLAVGGRLVYSTCSLNPIENEAVLQRIIKDADGALEL 349 Query: 391 VPL------------------------------------------NSAYWKSIDMAMALS 408 V + + + Sbjct: 350 VDAAHLVPGLKHKPGMTNWKLATKEVDAVYSTFDEVPEQLHTIIRPAMFPLPAKELATIG 409 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E +R+ P + + GFF + + Sbjct: 410 LEKCMRVLPHLQDSG--------GFFVAVIEK 433 >gi|261333471|emb|CBH16466.1| member of the NOL1/NOP2/sun family of proteins [Trypanosoma brucei gambiense DAL972] Length = 806 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 138/388 (35%), Gaps = 48/388 (12%) Query: 97 DVADYAVVDLAVEQAKRDKENRHFA--KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 V +D K K +R + + N + + E Sbjct: 126 GVGSKIPMDENAPLLKYYKGDRFASLFECTNGADVGKEWCEFLTCATSPLPMTLRVHRNE 185 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 R+ E + + + V + A + ++ + ++ + Sbjct: 186 RVMVSIANE---FLKNDPTVSSVLRPVVPLMPTSVAFFGCSHAAYHADSYVEHICRTLHA 242 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--------- 265 Q+ +++PV + G + +VLD+CAAPG KT Q + K Sbjct: 243 -----ASAVSFQEVVSALPVIVAGIQPHHTVLDMCAAPGSKTLQALDEMLKNGWNSSAVS 297 Query: 266 ---VTALDVSK-RRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFD 308 + A + + + + L L R H DA + ++ FD Sbjct: 298 SGVMVANEKDRVKATQTLPARLKRYHAPNVICTRCDAVQWPRLLCPTTQGDMYLGERRFD 357 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 V+ D PCS GT+R+ P + + + QR LL +G+ ++ GI+V+S CSL Sbjct: 358 RVICDVPCSGDGTLRKEPSLASSWSAGYVKSLLPTQRALLRRGLDLLETDGILVYSTCSL 417 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI----DMAMALSPEGW-IR--ITPDMLE 421 ++ EEVV L VEL+ ++S + LSP+ +R P+ + Sbjct: 418 QPKEDEEVVCAGLELFGDAVELLDVSSILRECGVQLHSFGGLLSPDTTHLRNSALPNSYD 477 Query: 422 -----KIDGVSSGMDGFFAVALRRLIQP 444 ++ GFF A R+L P Sbjct: 478 GRKVLRVLPHKDDTGGFFIAAFRKLSGP 505 >gi|120601249|ref|YP_965649.1| Fmu (Sun) domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561478|gb|ABM27222.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris DP4] Length = 431 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 71/259 (27%), Positives = 107/259 (41%), Gaps = 14/259 (5%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 +E ++ RL E P + G+ ++QD S+ +P +V Sbjct: 26 LEAQGYRFIPEPFSPWSRRLVEEPRPLGGSLAAFFGLIYIQDRSSMLPPVALAPPPGSAV 85 Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDY 301 LD+CA+PG KT L V + ++ RL LR NL L+L +A Sbjct: 86 LDMCASPGSKTGFLAQLVGETGFVLGNEPNRSRLATLRQNLFTLNLLHAATCSYPGESLP 145 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P+ +D + +D PCS GT+ R+P VL D I QR LL + ++PGG V Sbjct: 146 LPEGTWDCIQLDPPCSGWGTVERNPQVLKLWQGDKIRPLIALQRLLLAEARRLLRPGGRV 205 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V+S C+ + ++E V+ + + E VPL EG +R+ P Sbjct: 206 VYSTCTTNVDENEAQVRYAIDE--LGFEPVPLEPPPGFVFAAPELPGCEGVLRVDPQGSA 263 Query: 422 KIDGVSSGMDGFFAVALRR 440 GFF A RR Sbjct: 264 AQ--------GFFVAAFRR 274 >gi|302346548|ref|YP_003814846.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica ATCC 25845] gi|302150292|gb|ADK96553.1| NOL1/NOP2/sun family protein [Prevotella melaninogenica ATCC 25845] Length = 467 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 100/249 (40%), Gaps = 10/249 (4%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255 + + P G ++VQ+AS+ + + LDLCAAPGGK Sbjct: 91 PWCKEGYWLDTRPNFTFDPLLHAGAYYVQEASSMFLSHVLQHLVKQPVMALDLCAAPGGK 150 Query: 256 TAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311 T +G+ + + + +R + L N+ + + DY K FD ++ Sbjct: 151 TTCARTSLPAGSFLFSNEPIGKRAQILAENVQKFGHEGVAVTNNYPRDYKKTKLGFDVII 210 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS G R+ P + ++ QR ++ +KPGGI+++S C+ + Sbjct: 211 ADVPCSGEGMFRKDPQSIEEWSLQNVENCWQLQRSIIADIWDNLKPGGILIYSTCTFNAH 270 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 + EE + +L + VP A+ + + +G R P + + + + Sbjct: 271 EDEENIAWILNEYDAELLSVPTEEAWNITGSLIDNPLKDG--REFP--VYRFIPGKTRGE 326 Query: 432 GFFAVALRR 440 G F +R+ Sbjct: 327 GIFMAIIRK 335 >gi|20094206|ref|NP_614053.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] gi|19887231|gb|AAM01983.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19] Length = 356 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 26/234 (11%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---TA 268 + + G + Q + + V+ +V+DLCAAPGGK + + A Sbjct: 142 VRETEAYRRGWVYSQGLPSILAVEALSPEPGETVVDLCAAPGGKCSHVAQITGPESKIVA 201 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHP 326 +D S RLE++ L RL + + + DA + D VLVD PC++ G P Sbjct: 202 IDRSAPRLERMEARLRRLGIDWVETVHGDARKVVRRLRGTADVVLVDPPCTALGV---RP 258 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + ++ + +Q LL G +K GG +++S C+L ++E VV++ +R Sbjct: 259 KLWVEATYEEALGLPSYQYSLLRAGYEVLKEGGRLLYSTCTLTPTENELVVERAIRE--- 315 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L P + + P + GFF L + Sbjct: 316 -LNLEPETPVLRPARRSGPGVV------FLPHRADVP--------GFFYAVLVK 354 >gi|192359919|ref|YP_001982883.1| tRNA and rRNA cytosine-C5-methylase [Cellvibrio japonicus Ueda107] gi|190686084|gb|ACE83762.1| tRNA and rRNA cytosine-C5-methylase [Cellvibrio japonicus Ueda107] Length = 442 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 63/321 (19%), Positives = 112/321 (34%), Gaps = 41/321 (12%) Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + +A + + +W E +F+ ++ L ++ + +T Sbjct: 148 WYGLRPGWTGLLAERARLSDWSSEECRHFFHQQTQLP---PLWLRPQQGVSAQVMADTLV 204 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + + L G + + S + +G+ +QD ++ V D CA Sbjct: 205 KQGVSARLDLQGNLFAQGGRGLASTAAYQQGLVEIQDWASQQIAAAVQAQPGQKVWDCCA 264 Query: 251 APGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-------AFD 300 GGKT + + + + A D+ +LE+L+ R L+ + Sbjct: 265 GAGGKTLAIAAPMENKGVLVATDLYAYKLEELKRRAKRAGLFNLRSFTWTGEQPLQLPQE 324 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 ++ FD VLVDAPC+++GT RR+PD W + D + QR+LL V+PGG Sbjct: 325 IARQQGFDWVLVDAPCTASGTWRRNPDARWRFNPADTQELVDIQRRLLDLAALSVRPGGH 384 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CS ++E P P Sbjct: 385 LVYATCSWQYAENEAQADAFCARHPAFE----------------------------PVSQ 416 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 + D F RRL Sbjct: 417 RLVGAPRQDSDTMFVAVFRRL 437 >gi|118474156|ref|YP_892281.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. fetus 82-40] gi|261885964|ref|ZP_06010003.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413382|gb|ABK81802.1| NOL1\NOP2\sun family protein [Campylobacter fetus subsp. fetus 82-40] Length = 287 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 24/235 (10%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTA 268 + F G ++Q+ S+ + +VLD+CA+PGGK + + + Sbjct: 72 LTHCDLFNSGKIYIQNPSSFLAPLTLNAAPGQTVLDMCASPGGKSIALSNFMEKNGYLAT 131 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHP 326 ++ R L+ NL + + DA FD +L+DAPCSS + Sbjct: 132 MESDTNRFFTLKSNLKKYNCEWVKTYNKDARSVSRTCYEKFDKILLDAPCSSYSCYNEN- 190 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +I + Q++LL ++ +K GG +V+S C+ K+++EEV++ L S Sbjct: 191 --FKEKSYKEIKNISKLQKQLLNSALNALKSGGEIVYSTCTFYKEENEEVIKNALNS-KF 247 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++++P++ +++ + E IRI PD MD FF L +L Sbjct: 248 KIQILPID------VNLQQVVKSEFGIRILPDDT---------MDAFFISHLIKL 287 >gi|298479695|ref|ZP_06997895.1| NOL1/NOP2/sun family protein [Bacteroides sp. D22] gi|298274085|gb|EFI15646.1| NOL1/NOP2/sun family protein [Bacteroides sp. D22] Length = 510 Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 9/231 (3%) Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ G+ + A + Sbjct: 92 PLFHAGCYYVQEASSMFVEQVLRQYVTGPVKMLDLCAAPGGKSTHARSVLPEGSLLVANE 151 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 V + R + L NL + + D D+ FD +L D PCS G R+ P + Sbjct: 152 VIRNRSQILAENLTKWGHPDVVVTNNDPADFAALPSFFDVILTDVPCSGEGMFRKDPVAV 211 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 ++++ QR+++ +KPGG++++S C+ + ++ EE + + + Sbjct: 212 EEWSSENVEICWQRQRRIIGDIWDTLKPGGVLIYSTCTFNTKEDEENARWIQQEYGAEPL 271 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V + + + D+ + + +G P + + +GFF A R+ Sbjct: 272 TVQVQENWNITGDL-LPDNCDGSKSSIP--VYHFFPHKTKGEGFFLAAFRK 319 >gi|296242035|ref|YP_003649522.1| Fmu (Sun) domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094619|gb|ADG90570.1| Fmu (Sun) domain protein [Thermosphaera aggregans DSM 11486] Length = 386 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 25/308 (8%) Query: 143 AGISIIPEWFKERLENFYGKERVLA-ISDACISPLYIDLT-VKFDIETWAHKLNAVMLPT 200 A P W + L + + ++ + V IE L + Sbjct: 90 AKKYSYPTWIVKELLKHLPAGEAERTLRNLNEKKRWVRINIVNSTIEEALECLEKEGVKF 149 Query: 201 GGIRLK-------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPG 253 + I + F +G +D S+ I V+ +LD C+APG Sbjct: 150 QRHHMFEDLLRIANPFYPIGNSKCFKKGYLTPEDLSSYILVENAMKYIGSPILDACSAPG 209 Query: 254 GKTAQLIVSGAKV-TALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDAFDYCPKKLFDAVL 311 K ++ A+D S +RL + L++ + + ++ D+ F V+ Sbjct: 210 TKLFHVLSRRLLKAIAVDYSSKRLLDAKKILEKYVNQGSIILVNGDSRILAFNNRFSIVI 269 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 VDAPC+ +G + P V + + Q++L+ + GG ++++ CS+ Sbjct: 270 VDAPCTGSGAVYADPSVKLRLTRHRLRNYSLIQQELVRNVLKL---GGNILYATCSIIPY 326 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 + E++++++ + +EL L Y + +S RI P +E Sbjct: 327 EGEKIIEEIYKE--GSIELQELRGEYIDTAYPGYGVS-YKTYRIYPHKVEGQ-------- 375 Query: 432 GFFAVALR 439 GFF R Sbjct: 376 GFFISIFR 383 >gi|323446955|gb|EGB02944.1| hypothetical protein AURANDRAFT_68423 [Aureococcus anophagefferens] Length = 626 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 79/353 (22%), Positives = 119/353 (33%), Gaps = 28/353 (7%) Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 + K N+ A + P R+ + + Sbjct: 2 PKAKPNKQGAARFEAYYALQHIVPDSEWPAFLKTLATPLPITFRITDATHDGHAAWLEAE 61 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS---LPGFAEGVWWVQDA 228 L + A ++ + + G Q+A Sbjct: 62 AARLGATRLPWYACGASTAWTFAGESRRGLRAARDAARDAALRDFLVSGTTSRNLSRQEA 121 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLD- 284 + +P L G +VLD CAAPG KTAQ G V A D+SK+R L C+ Sbjct: 122 VSMVPALLLGAAPGWAVLDACAAPGNKTAQLLERCGPGGLVVANDLSKKRSYALACHCAA 181 Query: 285 RLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 RL + A ++ P FD VL D PCS GTIR+ P V D + Sbjct: 182 RLGVRAARLVVASGDAARLPGPDGRFDGVLCDVPCSGDGTIRKAPRVREAWACDGGDRLH 241 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP--------IPVELVPL 393 Q + + + ++PGG +V+S CSL+ ++E VV +VLR P P+ P Sbjct: 242 GTQVAIARRCAALLRPGGRMVYSTCSLNPVENEAVVAEVLRLEPTLELAAAASPLPARPG 301 Query: 394 NSAYWKSIDMAMA---LSPEGWIRITP-------DMLEKIDGVSSGMDGFFAV 436 + + D L +G R P + + GFF Sbjct: 302 LTTWAPCRDDGGGVARLDDDGGSRFPPKQDAPPLERCLRFLPHDGDTGGFFCA 354 >gi|297519395|ref|ZP_06937781.1| 16S rRNA methyltransferase B [Escherichia coli OP50] Length = 161 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 6/144 (4%) Query: 249 CAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCP 303 CAAPGGKT + A+V A+D+ ++RL ++ NL RL + A + + D +C Sbjct: 1 CAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKAT-VKQGDGRYPSQWCG 59 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 ++ FD +L+DAPCS+TG IRRHPD+ W R DI + A Q ++L +K GG +V+ Sbjct: 60 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVY 119 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIP 387 + CS+ +++ ++ L+ + Sbjct: 120 ATCSVLPEENSLQIKAFLQRTADA 143 >gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96] gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96] Length = 144 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 6/136 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + NAR + L +L+ + + L + + + Sbjct: 1 MSQARTNARKAAVQALYQWQMAGQNLSEIERQFLEEER---LKDAQKSYFVELFYGVPKN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 L ID VL + + + +LR+ V ++LY L++ V++ + AK D Sbjct: 58 LDAIDQVLSEFVDRPVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEGINLAK-DFGAD 116 Query: 119 HFAKLVNSILRRVSRE 134 K VN IL +V+++ Sbjct: 117 GSHKYVNGILDKVAQQ 132 >gi|299148011|ref|ZP_07041074.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_23] gi|298514194|gb|EFI38080.1| NOL1/NOP2/sun family protein [Bacteroides sp. 3_1_23] Length = 504 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 11/302 (3%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 +P F + G E ++ A + + + + H L+ + + Sbjct: 17 KMELPASFIDYTRALLGDEEYDKLAVALQQESPVSIRL--NQLKINHSLSDKVPWSSEGF 74 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN--NLSVLDLCAAPGGKTAQLI-- 260 E + P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ Sbjct: 75 YLEERLTFTFDPLFHAGCYYVQEASSMFVEQVLRQYITGPVKMLDLCAAPGGKSTHARSV 134 Query: 261 -VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK-KLFDAVLVDAPCSS 318 G+ + A +V + R + L NL + + D D+ FD +L D PCS Sbjct: 135 LPEGSLLVANEVIRNRSQILAENLTKWGHPDVVVTNNDPADFSALLSFFDVILTDVPCSG 194 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ P + +++ QR+++ +KPGGI+++S C+ + ++ EE + Sbjct: 195 EGMFRKDPVAVEEWSPENVEICWQRQRRIIADIWDALKPGGILIYSTCTFNTKEDEENAR 254 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + V + + + D+ LS +G + + + +GFF VA Sbjct: 255 WIQQEYGGEPLTVQVQENWNITGDL---LSDKGDHSKSSIPVYHFFPHKTKGEGFFLVAF 311 Query: 439 RR 440 R+ Sbjct: 312 RK 313 >gi|260823572|ref|XP_002604257.1| hypothetical protein BRAFLDRAFT_211078 [Branchiostoma floridae] gi|229289582|gb|EEN60268.1| hypothetical protein BRAFLDRAFT_211078 [Branchiostoma floridae] Length = 419 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 81/408 (19%), Positives = 154/408 (37%), Gaps = 31/408 (7%) Query: 44 RDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAV 103 +++ + A++ TL++ ID ++ L R+K+ + + +V V + L+ + Sbjct: 30 KNKRQLYALLCETLKYGSIIDDIIT--STQLLKREKFLKKHMAQVLVYEQLFGK--GLQI 85 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 E R+K H A + + +VSR + L + +P + + +E Sbjct: 86 GGKYREAMNRNKTALHSALVRLKVRSKVSRNEDLLPDTVKSQVSLPRYVRVNTLKISVEE 145 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + + A L K +E + + + G Sbjct: 146 AIEKLKKA-----GFSLADKPSVEDLETGQFVQDPHIPALLVFPPETGFHDNQLYKSGEI 200 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 +QD ++ IP Q+ V+D CAAPG KT+ + + + K+ A D+ +RL +R Sbjct: 201 ILQDKASCIPAQVLAPPPGACVIDACAAPGNKTSHMASLMQNNGKIFAFDIDAKRLATMR 260 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVLW---TRD 333 R + ++ + P + +L+D CS +G R + + Sbjct: 261 SLTQRAGVSCAQLVHGSFLECDPGDPRYSGVEYILLDPSCSGSGIANRLDHLTDEEGSIS 320 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 T+ + A FQ L +SF P V +S CS+ +Q++E+VVQ L+ L Sbjct: 321 TERLESLAQFQLSALRHALSF--PAARRVAYSTCSVHRQENEDVVQAALQEYEGKYHLQH 378 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + W+ IR +P+ +GFF + Sbjct: 379 ILPT-WRHRGTDTFPQAHRCIRASPEQDR--------TNGFFVALFEK 417 >gi|313680456|ref|YP_004058195.1| fmu (sun) domain protein [Oceanithermus profundus DSM 14977] gi|313153171|gb|ADR37022.1| Fmu (Sun) domain protein [Oceanithermus profundus DSM 14977] Length = 450 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 114/309 (36%), Gaps = 21/309 (6%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 ++ +P F ++ G E + L V T A P I Sbjct: 1 MAELPGAFLNKMAELLGDEYPDFLRALTEEERSHGLRVNTLKLTPAELRARAPWPLEPIP 60 Query: 205 L------KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 P G++++Q+ SA ++ VLDL AAPGGKT Sbjct: 61 WSPAGFYYPPEARPGPHPYHYAGLYYIQEPSAQAVGEVLDPRPGERVLDLAAAPGGKTTH 120 Query: 259 ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF-DYCPKKLFDAVLVDA 314 + + A +V R+ L NL+R + A FD VL+DA Sbjct: 121 LAAKMAGRGLLVANEVDSGRIRGLLDNLERWGSTQAVVQAPVARLAERWGAFFDRVLLDA 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ P ++A Q +LL + V+PGG++V++ C+ +++E Sbjct: 181 PCSGEGMFRKEPAAAARWGPAAPARAAAVQARLLEAAAALVRPGGVLVYATCTFAPEENE 240 Query: 375 EVVQKVLRSSPI-PVELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGMD 431 VV LR+ P VE L+ ++ + P E R+ P L Sbjct: 241 GVVGAFLRTHPEFDVEDARLHPSFAPGVPAWGGGEPRLERAARLWPHRLRGE-------- 292 Query: 432 GFFAVALRR 440 G F L R Sbjct: 293 GHFLARLVR 301 >gi|305663689|ref|YP_003859977.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230] gi|304378258|gb|ADM28097.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230] Length = 390 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 109/238 (45%), Gaps = 21/238 (8%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVT 267 I LP + EG+ + Q A ++ ++D+CAAPGGKT ++ A + Sbjct: 166 PIRELPEYREGLIYPQSLPAMYVSRVVDPKPGEIIVDMCAAPGGKTGHMVELSRGKAYIF 225 Query: 268 ALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDA---FDYCPKKLFDAVLVDAPCSSTGTIR 323 A D S++R+E+++ LDRL +I D+ P D +L+D PCS+ G Sbjct: 226 AFDHSRKRIEEMKNTLDRLGYRQLVEIWRADSRYLHIDFPWIKADKILIDPPCSALGV-- 283 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 P + + DIV ++ +Q + L VK GGI+V+S C++ +++E+V+++ + Sbjct: 284 -RPKIYDRKSYSDIVSASRYQIQFLKSASIIVKIGGIIVYSTCTVTVEENEDVIERFINE 342 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +++ + + E + R P + G+F ++R Sbjct: 343 NRCFDV---IDTNISRGSRGVFGDNRELYTRFHPHI--------HDTTGYFIAKIKRK 389 >gi|195127777|ref|XP_002008344.1| GI13435 [Drosophila mojavensis] gi|193919953|gb|EDW18820.1| GI13435 [Drosophila mojavensis] Length = 443 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKL--- 279 Q+ + + V++ +LD+CAAPG KT + + + + ALD S R+ + Sbjct: 212 QNLPSMVCVRVLDPQPGERILDMCAAPGNKTTHMAELMCNRGTIIALDNSASRVRSMTEK 271 Query: 280 -----RCNLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPDVLWT 331 + D P FD +L+DAPCS G R Sbjct: 272 LANYTCITAHQFDATKAWDDNSDLDSIAPPFASGSFDRILLDAPCS--GLGNRPQLCCNI 329 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + + QR +L Q + ++PGGI+V+S C++ + + EE+V LR + Sbjct: 330 KQPKVLQSYPHIQRNILSQAVPLLRPGGILVYSTCTVTEAECEEIVSWALRKYTELQLVD 389 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + + + + GFF ++ Sbjct: 390 ATPKLGAPGLPLPGLEAAQCDLLQRFGPSRENRMQNLDTVGFFIAKFQKK 439 >gi|320038835|gb|EFW20770.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Coccidioides posadasii str. Silveira] Length = 829 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 61/240 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ + DA Y + FD Sbjct: 236 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATMYPSIRLPSLPVADGKRSPNRYLKFDR 295 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L++ + +KPGG VV+S CS++ Sbjct: 296 ILADVPCSGDGTARKNVNVWKDWNPANGIGLHPTQARILVRALQMLKPGGRVVYSTCSMN 355 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403 ++E V+ + P VE+V ++ W+ ++ Sbjct: 356 PIENEAVIASAIDRCGGPEKVEIVDCSNELQGLRRSPGLTSWTVMDKQGRIWNTWQDVEK 415 Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRL----IQPK 445 E RI M ++ GFF L + +P+ Sbjct: 416 GADGGDETLKRIVEGMFPPSEQSEAANLSRCMRVYPHQQDTGGFFITVLEKKGEIRAKPE 475 >gi|325269974|ref|ZP_08136583.1| NOL1/NOP2/sun family protein [Prevotella multiformis DSM 16608] gi|324987697|gb|EGC19671.1| NOL1/NOP2/sun family protein [Prevotella multiformis DSM 16608] Length = 443 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 10/249 (4%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSVLDLCAAPGGK 255 E + P GV++VQ+AS+ + + + LDLCAAPGGK Sbjct: 64 PWCKEGYWLESRPNFTFDPLLHAGVYYVQEASSMFLSHVLRQWVKHPVMALDLCAAPGGK 123 Query: 256 TAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVL 311 T G+ + + + RR + L N+ + + + DY K +FD ++ Sbjct: 124 TTCARTALPEGSFLFSNEPVGRRAQILAENVQKFGHGDIAVTQNYPRDYKKSKLVFDVII 183 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS G R+ P + T ++ QR ++ +KPGGI+V+S C+ + Sbjct: 184 ADVPCSGEGMFRKDPQSIAEWSTQNVENCRQLQRSIIADIWDNLKPGGILVYSTCTFNAH 243 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 + EE V +L + VP A+ + + G P + + + + Sbjct: 244 EDEENVAWILHEYGAELLPVPTKEAWNITESLVGNPLKNG--HAFP--VYRFIPGRTRGE 299 Query: 432 GFFAVALRR 440 G F +R+ Sbjct: 300 GLFMAVIRK 308 >gi|297680174|ref|XP_002817877.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN5-like [Pongo abelii] Length = 314 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 23/251 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L V++ CAAPG KT+ L Sbjct: 34 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVINACAAPGNKTSHLAALLK 93 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317 + K+ A D+ +RL + L R + ++ E D P +L+D CS Sbjct: 94 NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCS 153 Query: 318 STGTIRRHPDVLWTRDTDDI--VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R + A FQ++ L ++F ++ +++S CSL ++++ Sbjct: 154 GSGMPSRQLEEPGAGTPSPACLQALAGFQQRALCHALTFPSLQ---RLIYSTCSLCREEN 210 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+VV+ L+ +P L P A W ++ + +R +P+ GF Sbjct: 211 EDVVRDALQQNPGAFRLAPALPA-WPHRGLSTFPGADHCLRASPETTLSS--------GF 261 Query: 434 FAVALRRLIQP 444 F R+ P Sbjct: 262 FVAVTERVEVP 272 >gi|119186591|ref|XP_001243902.1| hypothetical protein CIMG_03343 [Coccidioides immitis RS] Length = 828 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 61/240 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ + DA Y + FD Sbjct: 236 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATMYPSIRLPSLPVADGKRSPNRYLKFDR 295 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L++ + +KPGG VV+S CS++ Sbjct: 296 ILADVPCSGDGTARKNVNVWKDWNPANGIGLHPTQARILVRALQMLKPGGRVVYSTCSMN 355 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403 ++E V+ + P VE+V ++ W+ ++ Sbjct: 356 PIENEAVIASAIDRCGGPEKVEIVDCSNELQGLRRSPGLTSWTVMDKQGRIWNTWQDVEK 415 Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRL----IQPK 445 E RI M ++ GFF L + +P+ Sbjct: 416 GADGGDETLKRIVEGMFPPSEQSEAANLSRCMRVYPHQQDTGGFFITVLEKKGEIRAKPE 475 >gi|322778737|gb|EFZ09153.1| hypothetical protein SINV_02088 [Solenopsis invicta] Length = 603 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 88/444 (19%), Positives = 165/444 (37%), Gaps = 45/444 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF-V 70 ++++ V SL L+ + + + + TLR LP++D +LD Sbjct: 19 ANIVRRVREDGASLKTLIYEKKHPNV---------AGIYGLSVNTLRALPQLDQLLDKTQ 69 Query: 71 LISSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++ PR L RV + ++L+ L V+ + + K +E ++ A + Sbjct: 70 ILREQPRLDPW---LARVLITELLWRKGCLKSGSKPVLTVLAYENKLREEFKNLAHVETL 126 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 ++ + K ++ + E+ + + ++ +S + Y+ + Sbjct: 127 VVDKEKVIKPRYVRINTLLLS-----VEKAISIFQEDGWQLLSRSTTYSSYLR-----SL 176 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 + L I + G+ G +QD ++ PV L + VL Sbjct: 177 SQLSKPYFIQDLHIPEILVFPSSTLFHEHNGYRNGELILQDKASCFPVHLLDPVRGSVVL 236 Query: 247 DLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D+CAAPG K + + KV A+++ +R E L + + H + + DA P Sbjct: 237 DMCAAPGMKATHVAAKLQNCGKVYAVEIDAKRFEILVSQIKKTHSSCVESLNQDALTLDP 296 Query: 304 KKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTD--DIVKSACFQRKLLLQGISFVKPGG 359 K +LVD PCS +G + R + + FQ LL + Sbjct: 297 KLYSHVEYILVDPPCSGSGIVDRPKQSDMDGKPELERLQNLQSFQVYLLRYALFNFPNAK 356 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMALSPEGWIRIT 416 +++S CSL +++EEV+ +VL L+P+ WK+ A + + Sbjct: 357 RIIYSTCSLHPEENEEVIDEVLADIGNAYRLLPVRQLLKNNWKNFSSAKYNCGDTCLYSK 416 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 PD GFF R Sbjct: 417 PDDDFCN--------GFFVAVFER 432 >gi|303317660|ref|XP_003068832.1| NOL1/NOP2/sun family protein [Coccidioides posadasii C735 delta SOWgp] gi|240108513|gb|EER26687.1| NOL1/NOP2/sun family protein [Coccidioides posadasii C735 delta SOWgp] Length = 829 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 61/240 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ + DA Y + FD Sbjct: 236 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATMYPSIRLPSLPVADGKRSPNRYLKFDR 295 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L++ + +KPGG VV+S CS++ Sbjct: 296 ILADVPCSGDGTARKNVNVWKDWNPANGIGLHPTQARILVRALQMLKPGGRVVYSTCSMN 355 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403 ++E V+ + P VE+V ++ W+ ++ Sbjct: 356 PIENEAVIASAIDRCGGPEKVEIVDCSNELQGLRRSPGLTSWTVMDKQGRIWNTWQDVEK 415 Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRL----IQPK 445 E RI M ++ GFF L + +P+ Sbjct: 416 GADGGDETLKRIVEGMFPPSEQSEAANLSRCMRVYPHQQDTGGFFITVLEKKGEIRAKPE 475 >gi|195133514|ref|XP_002011184.1| GI16150 [Drosophila mojavensis] gi|193907159|gb|EDW06026.1| GI16150 [Drosophila mojavensis] Length = 725 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 67/392 (17%), Positives = 123/392 (31%), Gaps = 76/392 (19%) Query: 114 DKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACI 173 + + + + SI + + +++ + + L A Sbjct: 53 CADEEEWTQFLASIRENLPTTFRVTGFKDEAKALLNIIKTQLFTEYVRAVAELHELPAEQ 112 Query: 174 SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIP 233 + L + + L + + IV G Q+A + IP Sbjct: 113 VERPLCLPWYPNGMAYQLHLTRKDIRRSEPLFRLHNFLIVETTA---GSISRQEAVSMIP 169 Query: 234 VQLFGTLNNLSVLDLCAAPGGKT-----------AQLIVSGAKVTALDVSKRRLEKLRCN 282 + VLD+CAAPG KT Q + V A DV R L Sbjct: 170 PLVLDVQPTDKVLDMCAAPGSKTAQLIEALHASPEQHKIPPGFVLANDVDNNRCYMLVHQ 229 Query: 283 LDRLHLYAEDIIEMDAFDYCP------------KKLFDAVLVDAPCSSTGTIRRHPDVLW 330 RL+ + D+ + FD +L D PCS GT+R++PD+ Sbjct: 230 AKRLNSPCLLVTNHDSSFFPNLLQTDVATNAKTILKFDKILCDVPCSGDGTLRKNPDIWM 289 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + Q +++ +G + GG +V+S CSL+ ++E V+Q++++ S +EL Sbjct: 290 KWNLAQAYNLHGVQYRIVRRGAEMLAVGGRLVYSTCSLNPIENEAVLQRIIKDSEGALEL 349 Query: 391 VPLNSA------------------------------------------YWKSIDMAMALS 408 V + + + Sbjct: 350 VDASHLVPGLKYKPGMTDWKLATKEVDAIYTSFDQVPEQLHTIIRPTMFPLPAAEMSQIG 409 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E +R+ P + + GFF + + Sbjct: 410 IEKCMRVLPHLQDSG--------GFFVAVIEK 433 >gi|14601183|ref|NP_147715.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1] gi|5104768|dbj|BAA80083.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1] Length = 388 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 26/237 (10%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TA 268 + LPGF EG+ + Q ++ + V+DL AAPGGK + + + Sbjct: 170 RVSELPGFREGLVYGQSVTSMYVARALDPRPGWVVVDLNAAPGGKVSHVAQLAGREAVIV 229 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----FDAVLVDAPCSSTGTIR 323 ++ +LR L+RL ++ D+ DAVLVD PC++ G I Sbjct: 230 AIDRPSKVGRLRETLERLGAGWVRVVGGDSRRASRLLPGLAGRVDAVLVDPPCTNIGVIP 289 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + V + D ++ +Q + + ++ GG++ +S C+L ++E +V + Sbjct: 290 K---VFDVKTLRDSAAASRYQWMFVEEAWRLLRRGGLLAYSTCTLSSLENELIVARA--- 343 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L P R + + + G GFF L + Sbjct: 344 -----------EELGFRLTWSWGLRPSRGRRSW--LGFRWEPHRDGTPGFFLAILEK 387 >gi|19173366|ref|NP_597169.1| PUTATIVE METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1] gi|19170955|emb|CAD26345.1| PUTATIVE METHYLTRANSFERASE [Encephalitozoon cuniculi GB-M1] Length = 515 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 120/329 (36%), Gaps = 48/329 (14%) Query: 150 EWFKERLENFYGKERV---LAISDACISPLYID-LTVKFDIETWAHKLNAVMLPTGGIRL 205 EW ++ L + R I ++ + D+ + + + Sbjct: 26 EWIEKDLAYAFRVARTPLTNMIKRRIEKYPFVRRIRYLEDVYEFRKRKEKDDVYREFTGF 85 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSG 263 +I V Q+ + +PV L + V+D+CAAPG KT Q V+ Sbjct: 86 LINQTNIG--------VIQRQEIVSMVPVLLMDLKKDSRVIDMCAAPGSKTKQILEAVTD 137 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------LFDAVLVDAPCS 317 V A DV+ +RL+ L + + + + DA + +FD V D CS Sbjct: 138 GLVIANDVNGKRLKVLVSETTKRPNGSLIVTKHDATAFPSIYEGGSQVMFDRVFCDVICS 197 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 S GT+R+ P +L Q ++L +G V GG+V +S CSL+ ++E VV Sbjct: 198 SDGTMRKSPGILDEWKLSKSGGLFDTQWRILKRGCDLVAEGGLVSYSTCSLNPIENECVV 257 Query: 378 QKVLRSSPIPVELVPLN-----SAYWKSIDMAMALSPEGWIRIT---------PDMLE-- 421 Q++L ELV + + D + EG +R P Sbjct: 258 QRMLLE--GDFELVDFRGDSRLALFPSGGDGTKLIFREG-LRKWGTDDQIFKNPHYQPCR 314 Query: 422 ---------KIDGVSSGMDGFFAVALRRL 441 ++ GFF LRR Sbjct: 315 VDLGLEKCIRLYPHDQDTGGFFIAILRRK 343 >gi|326669730|ref|XP_001919347.3| PREDICTED: putative methyltransferase NSUN6-like [Danio rerio] Length = 462 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 38/265 (14%) Query: 210 ESIVSLPGFA---EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ + + + G VLD+CAAPGGKT + + + Sbjct: 201 EPLYQSPSFDGVLTDELFLQNLPSVVVGYVLGPRPGERVLDMCAAPGGKTTHIASLMGNQ 260 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD--------------YCPKKLFDA 309 V AL+ + ++EK+ N L L ++ P++ FD Sbjct: 261 GVVVALEKVRSKMEKILRNAQMLKLDCIKAYCCNSIHAVSSDPAQEYTEGPPFPEESFDR 320 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ ++ ++ QRKL + +K GG++V+S C++ Sbjct: 321 ILLDAPCSGLG---QRPNMSYSWSLKEVCSYQPLQRKLFTTAVRLLKSGGVLVYSTCTVT 377 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDMLEKID-- 424 ++EE V L++ P + L P + LS E R P++ + Sbjct: 378 LAENEEQVSWALKTFPC-LTLQPQVPHVGSEGMLGAGLSCEQRRLLQRFRPELGWTGERF 436 Query: 425 ---------GVSSGMDGFFAVALRR 440 + GFF + Sbjct: 437 TFSLEKLPQDANQDTIGFFIAKFSK 461 >gi|321456480|gb|EFX67587.1| hypothetical protein DAPPUDRAFT_63836 [Daphnia pulex] Length = 449 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 37/250 (14%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 ++Q+ + + ++ VLDLCAAPGGKT + + + V ALD S ++++++ Sbjct: 203 FLQNLPSVLCGHALNPQSHHLVLDLCAAPGGKTTHIGSLMENKGSVIALDKSASKIKQIQ 262 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL-------------------------FDAVLVDAP 315 N ++L L D+ C + FD +L+DAP Sbjct: 263 ENSEKLGLTNITAFVQDSTTACIMEKPEHLQEYETTAVASLPTSPPFLPNSFDRILLDAP 322 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS+ G + P + ++ A Q+KL L ++PGG +V+S C+ + ++EE Sbjct: 323 CSALG---QRPQLYNPIRLKEVQSFARLQKKLFLTAAQLLRPGGRMVYSTCTYNIAENEE 379 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RI-TPDMLEKIDGVSSGMD 431 ++ L P + + N K L+ E I R +P+ +D S Sbjct: 380 IIDWALGLFP-SLRVTNFNIQIGKPGYRIGRLTEEDCIAMQRFGSPNESVSMDENSD-TI 437 Query: 432 GFFAVALRRL 441 GFF L ++ Sbjct: 438 GFFICCLEKI 447 >gi|67516951|ref|XP_658361.1| hypothetical protein AN0757.2 [Aspergillus nidulans FGSC A4] gi|40746243|gb|EAA65399.1| hypothetical protein AN0757.2 [Aspergillus nidulans FGSC A4] Length = 996 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 115/394 (29%), Gaps = 99/394 (25%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 + +ERL+N Y E + + D W+ ++ Sbjct: 106 HALFVQERLKNHYIPEITAVQYEGNNVEPPRPVEWYPDRLAWSMTTPKQVIRRFAPFASF 165 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--- 264 + G Q+ + IP L ++VLD+CAAPG K+AQL+ Sbjct: 166 QKFLVAET---DVGNISRQEVVSMIPPLLMDLRPGMTVLDMCAAPGSKSAQLMEMIHAGE 222 Query: 265 ----------------------------------KVTALDVSKRRLEKLRCNLDRLHLYA 290 + A D +R L + RL Sbjct: 223 EEAMLEVAKKAKEGTIGPEPAGPEGLNDDGRTTGLLIANDSDHKRAHMLIHQMKRLSSPN 282 Query: 291 EDIIEMDAFDYCPKK-----------------LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + DA Y + FD +L D PC+ GT R++ V Sbjct: 283 LIVTNHDATMYPSIRLPSRPSEDGKPTPNRYLKFDRILADVPCTGDGTARKNYGVWRDWT 342 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + Q ++L++ + +K GG VV+S CS++ ++E VV + ++ + Sbjct: 343 PQNGNGLHMTQVRILVRALQMLKVGGRVVYSTCSMNPIENEAVVASAIERCGGLEKVKII 402 Query: 394 N-----SAYWKSIDMAMALSPEGWIRIT--------------------------P----- 417 + + + + R P Sbjct: 403 DCSNELPGLKRVNGLRSWKVADRENRFWSSWQEVEEHRAQSGIAGLGRLSEGMFPPITDM 462 Query: 418 --DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 + +I GFF L + +P+ Sbjct: 463 PLERCMRIYPHLQDTGGFFITVLEKQSEIRAKPE 496 >gi|259488965|tpe|CBF88845.1| TPA: methyltransferase (Ncl1), putative (AFU_orthologue; AFUA_1G14180) [Aspergillus nidulans FGSC A4] Length = 990 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 65/394 (16%), Positives = 115/394 (29%), Gaps = 99/394 (25%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 + +ERL+N Y E + + D W+ ++ Sbjct: 100 HALFVQERLKNHYIPEITAVQYEGNNVEPPRPVEWYPDRLAWSMTTPKQVIRRFAPFASF 159 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--- 264 + G Q+ + IP L ++VLD+CAAPG K+AQL+ Sbjct: 160 QKFLVAET---DVGNISRQEVVSMIPPLLMDLRPGMTVLDMCAAPGSKSAQLMEMIHAGE 216 Query: 265 ----------------------------------KVTALDVSKRRLEKLRCNLDRLHLYA 290 + A D +R L + RL Sbjct: 217 EEAMLEVAKKAKEGTIGPEPAGPEGLNDDGRTTGLLIANDSDHKRAHMLIHQMKRLSSPN 276 Query: 291 EDIIEMDAFDYCPKK-----------------LFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + DA Y + FD +L D PC+ GT R++ V Sbjct: 277 LIVTNHDATMYPSIRLPSRPSEDGKPTPNRYLKFDRILADVPCTGDGTARKNYGVWRDWT 336 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + Q ++L++ + +K GG VV+S CS++ ++E VV + ++ + Sbjct: 337 PQNGNGLHMTQVRILVRALQMLKVGGRVVYSTCSMNPIENEAVVASAIERCGGLEKVKII 396 Query: 394 N-----SAYWKSIDMAMALSPEGWIRIT--------------------------P----- 417 + + + + R P Sbjct: 397 DCSNELPGLKRVNGLRSWKVADRENRFWSSWQEVEEHRAQSGIAGLGRLSEGMFPPITDM 456 Query: 418 --DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 + +I GFF L + +P+ Sbjct: 457 PLERCMRIYPHLQDTGGFFITVLEKQSEIRAKPE 490 >gi|115476970|ref|NP_001062081.1| Os08g0484400 [Oryza sativa Japonica Group] gi|42409394|dbj|BAD10707.1| proliferating-cell nucleolar antigen-like protein [Oryza sativa Japonica Group] gi|113624050|dbj|BAF23995.1| Os08g0484400 [Oryza sativa Japonica Group] gi|215686794|dbj|BAG89644.1| unnamed protein product [Oryza sativa Japonica Group] Length = 812 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 37/233 (15%) Query: 213 VSLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264 +L F E + Q+A + +P + VLD+CAAPG KT QL+ Sbjct: 171 QALESFHEFLKHESEVGNITRQEAVSMVPPLFLNIQPDHHVLDMCAAPGSKTFQLLEMIH 230 Query: 265 KV-----------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------- 306 + A DV+ +R + L N+ R+ + +A ++ ++ Sbjct: 231 QSKEPGLLPRALVVANDVNAQRCDLLIHNMKRMCTANLIVTNHEAQNFPDCRIANDLSEI 290 Query: 307 -----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 FD VL D PCS GTIR+ D+ ++ Q + ++GI+ + Sbjct: 291 YKKDCKPQRLEFDRVLCDVPCSGDGTIRKGHDMWRKWNSGMGNGLHLLQVDISMRGIALL 350 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 K GG +V+S CS++ ++E V+ ++LR S VEL+ +++ + + + Sbjct: 351 KVGGRMVYSTCSMNPVENEAVIAELLRRSGNSVELLDVSNELPELVHRPGLST 403 >gi|302841478|ref|XP_002952284.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f. nagariensis] gi|300262549|gb|EFJ46755.1| hypothetical protein VOLCADRAFT_62249 [Volvox carteri f. nagariensis] Length = 272 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 24/248 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVT 267 + P G +Q ++ +P + +V+D CAAPG KT ++ + +V Sbjct: 13 DLHDHPLVTRGSVVLQSKASCMPARALAPEPGWTVVDCCAAPGNKTTHLAAIMKNQGRVL 72 Query: 268 ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTI 322 A D RRL +L+ N + + D P VL+D CS +GT Sbjct: 73 AFDKDPRRLARLKANASLVGATSCVEARLADFLSLDPTAPEFKEVRGVLLDPSCSGSGTT 132 Query: 323 RRHPDVL---WTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVV 377 D L T + + A FQ L + F ++ +V+S CS+ +++E VV Sbjct: 133 FTRMDHLLPSHTGPAARVAQLARFQSAALSHALRFPSLE---RLVYSTCSVHVEENEAVV 189 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 L+ + + W + + E IR D G DGFF Sbjct: 190 AGALQQAAEAGLELADPFPSWHRRGLPLFPGAEKLIRT--------DAYLDGTDGFFVAL 241 Query: 438 LRRLIQPK 445 +R + Sbjct: 242 FQRRQTQE 249 >gi|261601979|gb|ACX91582.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2] Length = 350 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269 + LP G+ +VQ ++ L N ++D+ A GGK + +V Sbjct: 152 LADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 211 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326 D +++++EKLR +++ + +I + D+ D V++D PCS+ G P Sbjct: 212 DHTEKKVEKLRDLANKMGMR-IEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGI---RP 267 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + DI+ +Q++ L +K G+V++S C++ ++E+V+ Sbjct: 268 KLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 320 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S E IR P + + GFF L + Sbjct: 321 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 349 >gi|15897306|ref|NP_341911.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2] gi|284174558|ref|ZP_06388527.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus 98/2] gi|13813517|gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus P2] Length = 327 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269 + LP G+ +VQ ++ L N ++D+ A GGK + +V Sbjct: 129 LADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 188 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326 D +++++EKLR +++ + +I + D+ D V++D PCS+ G P Sbjct: 189 DHTEKKVEKLRDLANKMGMR-IEIYKADSRYLYEDYKIGDVDKVVIDPPCSALGI---RP 244 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + DI+ +Q++ L +K G+V++S C++ ++E+V+ Sbjct: 245 KLYDHKTKQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 297 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S E IR P + + GFF L + Sbjct: 298 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 326 >gi|238597444|ref|XP_002394329.1| hypothetical protein MPER_05799 [Moniliophthora perniciosa FA553] gi|215463187|gb|EEB95259.1| hypothetical protein MPER_05799 [Moniliophthora perniciosa FA553] Length = 188 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 28/156 (17%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L D PCS GT+R++ + +D Q ++L + + +K G +V+S C Sbjct: 27 FDRILCDVPCSGDGTLRKNLGIWKKWQPNDGNGLHGLQLRILQRAMKLLKADGRIVYSTC 86 Query: 367 SLDKQDSE-------------------EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 SL+ ++E E L + P L +W ++ L Sbjct: 87 SLNPVENEAVVAAALNANTDKAVKATYETYSAFLEADPQAASNTKLTEGHWPPQNVEE-L 145 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + E +RI P + + GFF L R + Sbjct: 146 NLERCMRIYPHLQDSG--------GFFVAVLERKQK 173 >gi|266623332|ref|ZP_06116267.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479] gi|288864887|gb|EFC97185.1| NOL1/NOP2/sun family protein [Clostridium hathewayi DSM 13479] Length = 255 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 15/158 (9%) Query: 286 LHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 + + D FD +L+DAPCS G R+ D++ + + + Sbjct: 14 WGIANICVTSETPDKLAGVFGPWFDKILIDAPCSGEGMFRKDEDMVKSYEEHGPEYYSRI 73 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q+++ Q + + PGG++++S C+ + + EE++ +L +ELV L Sbjct: 74 QKEITDQAVRMLAPGGLLLYSTCTFSRCEDEEIICHILNRH-EEMELVKLPLFE----GA 128 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + G +R+ P ++ G F L + Sbjct: 129 SDGIGLNGCLRLFPHKIKGE--------GHFMALLHKK 158 >gi|67477207|ref|XP_654109.1| Putative methyltransferase NSUN5 [Entamoeba histolytica HM-1:IMSS] gi|56471131|gb|EAL48723.1| Putative methyltransferase NSUN5 [Entamoeba histolytica HM-1:IMSS] Length = 372 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 85/223 (38%), Gaps = 17/223 (7%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCN 282 QD + P + N +D CAAPG KT ++ + + A D +R E LR Sbjct: 160 QDKPSCFPAFILNPPENSICIDACAAPGNKTTHLATIMNNTGIIYAFDKDIKRAELLRTT 219 Query: 283 LDRLHLYAEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIV 338 + ++I D + +L D CS +G + R RD + Sbjct: 220 VKNYQATNIEVICGDFLQSDIEDIRFENVTHILCDPSCSGSGILERQL-TKEKRDPARLR 278 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + FQ K++ + F K + +S CS++ +++E VV+ VL +P Sbjct: 279 MLSSFQTKIVSHAMKF-KNVQCITYSTCSVNNEENECVVKAVLDENPSFRLEPAFPQWQR 337 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + I + + E IR+ P M GFF R Sbjct: 338 RGIAIDDSYPYENCIRVDPH--------EDHMTGFFVALFVRK 372 >gi|313232302|emb|CBY09411.1| unnamed protein product [Oikopleura dioica] Length = 1215 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 61/309 (19%), Positives = 107/309 (34%), Gaps = 43/309 (13%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA-----HKLNAVMLPTGGI 203 E + L + + + L + W +L +G Sbjct: 82 KELIAQMETTHLSNIESLVLDNGKVVKPAEPLPWYPNRLAWKTNLSRQELRKFPQLSGFH 141 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-- 261 + G Q+ + IP L ++ +VLD+CAAPG KT+Q+I Sbjct: 142 QWMIAEG--------ESGHVTRQELVSMIPTLLLDIKSHCAVLDMCAAPGSKTSQIIEAL 193 Query: 262 ---------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC---------- 302 A D + RR L RL+ ++ DA Sbjct: 194 HADAKDGSLPEGFCVANDANNRRCYMLVHQAKRLNSPCCMVVNHDAQGMPNMKVKKDSGE 253 Query: 303 --PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 +D +L D PCS GT+R++PDV + ++ + Q ++ +G+ +K GG Sbjct: 254 GFEWLQYDRILADVPCSGDGTMRKNPDVWTSWRPNNTLNLHAMQFRIAQRGLELLKVGGK 313 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S CS+ + E VV +++ + LV ++ L E + P Sbjct: 314 MVYSTCSMSPIEDEAVVSALIKKCEGSIRLVSIDGMLP-------GLKYEKGVSTWPVYF 366 Query: 421 EKIDGVSSG 429 + Sbjct: 367 DGKFHTEPN 375 >gi|42567548|ref|NP_195710.3| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|332661751|gb|AEE87151.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] Length = 783 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 101/305 (33%), Gaps = 86/305 (28%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271 Q++ + +P + VLD+CAAPG KT QL+ V A DV Sbjct: 160 MTRQESVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMVVANDV 219 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------------------FDAVLV 312 +R L R + + + FD VL Sbjct: 220 DYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPHPIDQLLFDRVLC 279 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT+R+ PD+ ++ Q L ++G+S +K GG +V+S CS++ + Sbjct: 280 DVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGRMVYSTCSMNPIE 339 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA--------------------MALSPEGW 412 E VV ++LR VELV ++ + I +G Sbjct: 340 DEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRSYKDVPKSQRDGV 399 Query: 413 IR-ITP-----------------------------------DMLEKIDGVSSGMDGFFAV 436 +R + P ++ +I GFF Sbjct: 400 LRSMFPSGKSDKDSSGGKNSYEEMASISSDESAEEVCDLPLELCMRILPHDQNTGGFFIA 459 Query: 437 ALRRL 441 L ++ Sbjct: 460 VLHKV 464 >gi|291459196|ref|ZP_06598586.1| NOL1/NOP2/sun family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418450|gb|EFE92169.1| NOL1/NOP2/sun family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 474 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 35/285 (12%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 E ++ + +S + D + K RL E P G+ Sbjct: 50 EDARSVYETLLSDWGLRALPGSDAALFEGKEYFREFILDERRLLERSIRPGLHPYHEAGL 109 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-----GAKVTALDVSKRRLE 277 +++Q+ SA + VLDLCA+PGGK+ Q G + + + R Sbjct: 110 YYLQEPSAMQALPALSVRPFDRVLDLCASPGGKSGQAADRLSLLEGGILISNEYVPERAR 169 Query: 278 KLRCNLDRLHLYAEDIIEMDAFD--YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N++RL + ++ D+ + F +LVDAPCS G R+ + + + Sbjct: 170 TLSSNIERLGIENAAVLNEDSARLSRHFPEYFSRILVDAPCSGEGMFRKDENAISEWSPE 229 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 ++ QR++L +S + PGG++ +S C+ ++ ++E +L P Sbjct: 230 NVEHCISRQREILRNAVSMLSPGGLLCYSTCTFERGENEGQRDFLLSGYP---------- 279 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++R+ + +G + RR Sbjct: 280 ----------------FLRL--GFERRTYPQRGPGEGHYIAIFRR 306 >gi|159041954|ref|YP_001541206.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920789|gb|ABW02216.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167] Length = 426 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 83/445 (18%), Positives = 168/445 (37%), Gaps = 52/445 (11%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ ++ + + +S+ L ++ A V+ +R + + + Sbjct: 14 AADVMYIIEDRLVSMDKAFHYARLRHR---LKAPLRVYYNA-VSDVVRNYAYLSFMAKQL 69 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L SS + LL + + R + + R Sbjct: 70 LGSSSRKAIAKTWLLL----------------NTNDHYSRRLRKRVRGRVEG---AEARL 110 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVL-AISDACISPLYIDLT-VKFDIET 188 + + L ++ P + E L G + +S ++ + +K D++ Sbjct: 111 SEVKDNDPLTYLSIKYSFPRFIVEELSRGMGLSELEDYLSSLNRRVTWLRVNTLKVDLDK 170 Query: 189 WAHKLNAVMLPTGGIRLKELP-------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 L + RL + L F +G QD ++++ V Sbjct: 171 AIRLLEDEGVEFTQSRLYPFMLLVKGYRRPMGYLRLFKDGAVVPQDLASALVVLNLMPEP 230 Query: 242 NLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEM 296 ++D CAAPG KT+ ++ + A+V A+DVSK RL K+R L R+ + I+ Sbjct: 231 GDVIIDACAAPGMKTSLIMQLTDNKAEVIAIDVSKNRLSKMRSILRRMGVDDSRVHIMRS 290 Query: 297 DAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTR--DTDDIVKSACFQRKLLLQGIS 353 D+ + VL+DAPC+S+G + + P + + + + + Q +LL I+ Sbjct: 291 DSSRLRLTGVNVNKVLIDAPCTSSGAVSKDPGIKLILASNPGLVKRQSLVQSSILLNLIN 350 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K +V++ CS+ ++ EEV++++ +S V LV + + + +S Sbjct: 351 QLK-DASIVYATCSILPEEGEEVIERI--NSSSSVSLVKPSVGDLSNGYVNYPVSSVVG- 406 Query: 414 RITPDMLEKIDGVSSGMDGFFAVAL 438 R+ P + +GFF L Sbjct: 407 RVMPHI--------HNAEGFFISKL 423 >gi|328786980|ref|XP_393743.4| PREDICTED: putative methyltransferase NSUN5-like [Apis mellifera] Length = 607 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 164/450 (36%), Gaps = 57/450 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF- 69 ++ ++ V K SL L+ + + + + ++ TL+ +ID +++ Sbjct: 18 AAKIIQEVREKGGSLKSLIYNQRHPN---------KSAIYSLCVKTLQKEGQIDNLINKT 68 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILY------LDVADYAVVDLAVEQAKRDKENRHFAKL 123 L+++ PR L ++L + ++L+ D ++ A K Sbjct: 69 NLLTNEPRFDAWLAKIL---ITELLWGKNALKTDCKPIKII-----LAYEQKLREEL--- 117 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 N + S + ++ +++ +E I ++ Sbjct: 118 NNIGVDAFSTSPETVKNARYVRINTLLVTLKKGISYFQEEGWSLIPKCSNYIQHL----- 172 Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESI-VSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 + K N + L P+++ PG+ G +QD ++ +P L Sbjct: 173 -NAVKNLKKPNFIQDFHIPEILVFPPDTVFYDHPGYQNGEIILQDKASCLPSYLLNPEPG 231 Query: 243 LSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-- 297 VLD+CAAPG KT+ ++ + K+ A++ + R + L + + + I D Sbjct: 232 SIVLDMCAAPGMKTSHLAAILTNTGKIYAVEKDEHRYKTLCKQIKLTNASCVETINKDSL 291 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGI---S 353 + + +LVD CS +G + R + D + + FQ +L + Sbjct: 292 TLETNEYSKVEYILVDPSCSGSGMLDRQIVYGKEKGDPQRLKQLQAFQVFVLRHALLNFP 351 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS---AYWKSIDMAMALSPE 410 VK VV+S CS +++EEVV ++L + ELVP+ W + + Sbjct: 352 NVK---RVVYSTCSTHCEENEEVVDEILENIQNAYELVPVKKLLNEEWLNFSSKKYKCSD 408 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + D+ D FF R Sbjct: 409 KCLYAISDVDMCND--------FFVAVFER 430 >gi|149436867|ref|XP_001514526.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5, partial [Ornithorhynchus anatinus] Length = 433 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 145/402 (36%), Gaps = 24/402 (5%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +D+++D L+ + + + L ++L V +L Sbjct: 5 LYALVCETQRYSAVLDSIIDSAGLLKAEKKLRPHLAKVL---VYDLLLGRGLRGGGRWKP 61 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 V R + A+L + + +E S +P + + + V Sbjct: 62 VLARHRARLQAELARLKVRRRVSRNEDLLEPASGARPASKVPRYVRVNTLKTCPGDAVDY 121 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 S + +++ K + + + + P + G +QD Sbjct: 122 FKRQGFSYQG-RASSPEELQALEGKRFFLDPLLPELLVFPAGTDLHENPFYRAGHLILQD 180 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLD 284 ++ +P L V+D CAAPG KT+ L + K+ A D+ RL + L Sbjct: 181 KASCLPATLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAGRLASMATLLT 240 Query: 285 RLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRHPDVL--WTRDTDDIV 338 R + ++ D P +L+D CS +G + R + + + Sbjct: 241 RAGVSCCELANEDFLSVPPTDPRYGRVQYILLDPSCSGSGMVSRRLEEPEADGPSPERLR 300 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 A FQ K L +SF +V+S CS+ ++++E+VV L+ S L A W Sbjct: 301 ALAAFQLKALRHALSFPALQ-RLVYSTCSVCQEENEDVVWAALQQSAGTFRLAEALPA-W 358 Query: 399 KSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + IR +P++ GFF L R Sbjct: 359 PHRGLDTFPDAARCIRASPELTL--------TGGFFVAVLER 392 >gi|282879251|ref|ZP_06288001.1| NOL1/NOP2/sun family protein [Prevotella buccalis ATCC 35310] gi|281298644|gb|EFA91063.1| NOL1/NOP2/sun family protein [Prevotella buccalis ATCC 35310] Length = 539 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 109/341 (31%), Gaps = 24/341 (7%) Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL--YID 179 + + L +PE F+ G + A I Sbjct: 20 GRNSHAFSCKETKFFLHLHETNKPMHLPEAFETYTRTLMGNHLYDDLVQALQDEPAACIR 79 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF-- 237 L + + + + P G ++VQ+ S+ + Sbjct: 80 LNRQKCPSAQVAVPHVRVPWCDQGYRLACRPAFTFDPLLHTGAYYVQEPSSMFLSAVLRQ 139 Query: 238 GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 + +LDLCAAPGGK+ G+ + + + R + L N+ + + Sbjct: 140 YVREPVKMLDLCAAPGGKSTLARSELPEGSVLMCNEPVRNRAQVLAENVQKWGHPDVIVT 199 Query: 295 EMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 DY FD +L DAPCS G R++ + + ++ A QR ++ Sbjct: 200 NNYPADYRKAGLRFDVILCDAPCSGEGMFRKNSNAIDEWSEQNVENCARLQRDIVADAWE 259 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS----- 408 ++ GG++++S C+ + +++EE V + + + + + + Sbjct: 260 CLEAGGLMIYSTCTFNAKENEENVAWICSELGAKTLSIDTETHWVIAPTPLHLETQGTSP 319 Query: 409 ---------PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P R P +G F LR+ Sbjct: 320 IDGSSHLAEPLHVYRFIPGYHNAQGKQMG--EGLFMAVLRK 358 >gi|303237047|ref|ZP_07323617.1| NOL1/NOP2/sun family protein [Prevotella disiens FB035-09AN] gi|302482434|gb|EFL45459.1| NOL1/NOP2/sun family protein [Prevotella disiens FB035-09AN] Length = 453 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 108/308 (35%), Gaps = 23/308 (7%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI----ETWAHKLNAVMLPTGGI 203 +P+ F + +G+ER P + + + T L +P Sbjct: 19 LPKAFVAYTKELFGEERFNRFLMGLGQPSPVSIRLNPFKLPANVTINEALKPTQIPWCKE 78 Query: 204 RLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV--LDLCAAPGGKTAQLI 260 P G ++VQ+AS+ + + V LDLCAAPGGKT Sbjct: 79 GFYLNERPNFTFDPLIHAGAYYVQEASSMFLAHVLRQFVHFPVALLDLCAAPGGKTTCAR 138 Query: 261 ---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPC 316 S + V + + +R + L N+ + + +Y K FD ++ D PC Sbjct: 139 TAIPSESIVFSNEPMGKRAQILAENVQKFGHPDVVVTNNYPIEYKKTKLKFDVIVADVPC 198 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G R+ + ++ QR ++ + GG++++S C+ + ++EE Sbjct: 199 SGEGMFRKDEQAMAEWSEKNVANCWQLQRSIVADIWDNLNSGGLLIYSTCTFNAHENEEN 258 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW----IRITPDMLEKIDGVSSGMDG 432 + +L + V + + + + R P + G Sbjct: 259 IAWILNEYNAELLEVKIEKDWNIMGSLINNPLKDKDSFPVYRFIPGFTKGE--------G 310 Query: 433 FFAVALRR 440 F +++ Sbjct: 311 LFMAVIKK 318 >gi|238597450|ref|XP_002394331.1| hypothetical protein MPER_05797 [Moniliophthora perniciosa FA553] gi|215463191|gb|EEB95261.1| hypothetical protein MPER_05797 [Moniliophthora perniciosa FA553] Length = 207 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 17/150 (11%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVV 362 FD VL+DAPCS TG I + V + D A Q++L+L + V K GG VV Sbjct: 5 FDRVLLDAPCSGTGVISKDSSVKVNKSERDFTLLAHLQKQLILCALDSVSPDSKTGGYVV 64 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--ML 420 +S CS+ ++E VV LR P V+LV + + + P + Sbjct: 65 YSTCSVTVDENEAVVDYALRKRPN-VKLVDTGIGFGR-----EGYTKYRGKVFNPSVKLT 118 Query: 421 EKIDGVSSGMDGFFAVALR-----RLIQPK 445 + MDGF+ + ++ + + Sbjct: 119 RRFYPHVHNMDGFYVAKFKVEKRSKMTKEE 148 >gi|302348820|ref|YP_003816458.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans 345-15] gi|302329232|gb|ADL19427.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans 345-15] Length = 382 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 31/237 (13%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTA 268 + LPGF EG+ + Q + V + +++D AAPGGKT+ QL +++ A Sbjct: 166 VRELPGFNEGLIYSQSLPSMWAVAIASPSPGETIIDFNAAPGGKTSLAAQLAGRKSRIIA 225 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRR 324 +D + EKLR NL RL +++ D+ + D VL+D PC++ G I + Sbjct: 226 IDR-ASKAEKLRDNLIRLGADWVNVVGGDSRRASSLLNIEGKADLVLIDPPCTNLGVIPK 284 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + T+ D V + +QR+ + + +KPGG +V+S C+L ++E V + Sbjct: 285 ---LYDTKRLADAVVLSRYQRQFISEAWKALKPGGRLVYSTCTLTDVENEANVLFAME-- 339 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L K M S G +R +P G GFF + + Sbjct: 340 --------LGFEVTKPYPMPREASYNGLGLRFSP---------EDGHPGFFISLMVK 379 >gi|218201332|gb|EEC83759.1| hypothetical protein OsI_29649 [Oryza sativa Indica Group] gi|222640753|gb|EEE68885.1| hypothetical protein OsJ_27712 [Oryza sativa Japonica Group] Length = 790 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 37/233 (15%) Query: 213 VSLPGFAEGV--------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA 264 +L F E + Q+A + +P + VLD+CAAPG KT QL+ Sbjct: 171 QALESFHEFLKHESEVGNITRQEAVSMVPPLFLNIQPDHHVLDMCAAPGSKTFQLLEMIH 230 Query: 265 KV-----------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------- 306 + A DV+ +R + L N+ R+ + +A ++ ++ Sbjct: 231 QSKEPGLLPRALVVANDVNAQRCDLLIHNMKRMCTANLIVTNHEAQNFPDCRIANDLSEI 290 Query: 307 -----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 FD VL D PCS GTIR+ D+ ++ Q + ++GI+ + Sbjct: 291 YKKDCKPQRLEFDRVLCDVPCSGDGTIRKGHDMWRKWNSGMGNGLHLLQVDISMRGIALL 350 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 K GG +V+S CS++ ++E V+ ++LR S VEL+ +++ + + + Sbjct: 351 KVGGRMVYSTCSMNPVENEAVIAELLRRSGNSVELLDVSNELPELVHRPGLST 403 >gi|255073107|ref|XP_002500228.1| predicted protein [Micromonas sp. RCC299] gi|226515490|gb|ACO61486.1| predicted protein [Micromonas sp. RCC299] Length = 490 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 66/292 (22%), Positives = 100/292 (34%), Gaps = 75/292 (25%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------------KV 266 G Q+A + IP L VLD+CAAPG KT QL+ V Sbjct: 204 GAITRQEAVSMIPPLLLDVKPQHRVLDMCAAPGSKTFQLLEMLHARAEERDEGSLPTGVV 263 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFDAVLVD 313 A D S +R L R + A + A + FD +L D Sbjct: 264 VANDASLQRANLLTHQTKRSNSPALIVTNHQAQKFPLLYPKSGEGDATREPYRFDRILAD 323 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS GT+R+ PD+ V Q + +K GG +V+S CSL+ + Sbjct: 324 VPCSGDGTLRKSPDLWKKWSPASGVDLHTLQLDIASHAARLLKVGGRLVYSTCSLNPLED 383 Query: 374 EEVVQKVLRSSPIPVELVPLNSA------------------------------------- 396 E VV +L+ + + LV ++ Sbjct: 384 EAVVAALLKRAKGALRLVDVSGELEGLKRKPGMYAWEVGDAFGWHERFDGVGRRQRNVAV 443 Query: 397 --YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ-PK 445 + A ++ E +RI P + GFF VA+ ++ + P+ Sbjct: 444 TMWPPGSSKAREMNLERCVRIMPHL--------DDTGGFFIVAIDKVGELPE 487 >gi|317154627|ref|YP_004122675.1| Fmu (Sun) domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944878|gb|ADU63929.1| Fmu (Sun) domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 427 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 106/264 (40%), Gaps = 15/264 (5%) Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 V+ + RL P ++ G+ ++QD S+ +P L Sbjct: 19 HVEALLAAQGFAFEPEPFYPLARRLIREPFALGDSLAARFGLIYIQDRSSMLPPLLLDPE 78 Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 SVLD+C+APG KT ++L+ V A + S RL LR NL R + Sbjct: 79 AGASVLDMCSAPGSKTGLLSRLVGREGFVFASEPSADRLGTLRANLRRTGSVNTATAKAK 138 Query: 298 AFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 A D P +D + +D PCS GT+ ++P V+ Q+ LL + + + Sbjct: 139 AQDLPFPDGSWDCIQLDPPCSGWGTVDKNPKVMELWGEGKTGPLVALQKTLLTKAAALLA 198 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 P G V++S C+ + +++E V L + + + L PL + +G +R+ Sbjct: 199 PDGSVLYSTCTTNVEENEAQVAWALDT--LDLALEPLAAPPGFIFGQPELPGMDGVLRV- 255 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 S GFF R+ Sbjct: 256 --------AADSEGQGFFLARFRK 271 >gi|289741935|gb|ADD19715.1| proliferation-associated nucleolar protein NOL1 [Glossina morsitans morsitans] Length = 400 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 73/405 (18%), Positives = 134/405 (33%), Gaps = 41/405 (10%) Query: 50 RAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL------DVADYAV 103 +A++ IDA ++ L ++L V +++Y D Sbjct: 15 QALLTHYTDNQRAIDAAIEKC--QILEENPRLSRELCITLVTELIYHRKDLKGDSKPVQT 72 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 V ++ + AK ++ R V + A + W K+ F + Sbjct: 73 VRAYRKRIMEALGGENLAKKKDTKPRYVRINTHIVSIADAHTVLAENWCKKDCPPFENYD 132 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE-GV 222 L + ++ A M + + + + E Sbjct: 133 DFLKAVETLEE----------------NEYMADMHVDDLLIFHSKQKYFWATHEYTESKK 176 Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 + +QD + + + +LD+CAAPG KT + + + A++ R L Sbjct: 177 FMLQDKATCLATIILNPPIGSIILDMCAAPGMKTIHLSNFVKNQGTIYAIEKDAERYRLL 236 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 R + IE D P++ D +L+D PCS +G R D + Sbjct: 237 RSMTKKAKCRNIKPIEADVLTVTPEQCPDVEYILLDPPCSGSGMQNRMCLNPEVNDAQRL 296 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 K Q KLL ++F VK +V+S CS+ ++++E+VV+K L +P L + Sbjct: 297 QKLGGLQIKLLNHAMNFPQVK---RIVYSTCSIHREENEDVVKKCLHLNPTFKLLSAKKA 353 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 K ++ G G F + Sbjct: 354 LRNKWCNLGDRDYDFG------KKCLYSRPEKDLTIGMFIAIFEK 392 >gi|325191085|emb|CCA25571.1| tRNA (cytosine5)methyltransferase NSUN2 putative [Albugo laibachii Nc14] Length = 702 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 97/282 (34%), Gaps = 71/282 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVS 272 Q+A + IP L VLD+CAAPG KT+Q + V A D Sbjct: 142 ITRQEAVSMIPPLLLQVEPEHRVLDMCAAPGSKTSQILESLHAGTSDAIPSGLVVANDCD 201 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSSTGTIRRH 325 +R L RL A + +A ++ + FD VL D PCS GT+R++ Sbjct: 202 LKRAFLLVHQSKRLPSPALLVTCGEAQNFPLLSDCPSSQGFFDRVLCDVPCSGDGTLRKN 261 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 P + D + + Q + +G +K G++ +S CS + ++E VV +L S Sbjct: 262 PTIWKNWDPKNGIHLHPLQLAIAKRGAQVLKVNGLMCYSTCSFNPIENEAVVASLLLWSR 321 Query: 386 IPVELVPLNSA----------------------------------------------YWK 399 +ELV ++ + Sbjct: 322 GALELVDVSEKIAKLRRRPGLKTWKVFDSDMIECTSVQKETDSDKSGRKKEKLMETMFPP 381 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S D L IR P GFF L+++ Sbjct: 382 SQDEMEQLGMAKCIRCLPHD--------ENTGGFFICLLKKV 415 >gi|300726778|ref|ZP_07060208.1| NOL1/NOP2/sun family protein [Prevotella bryantii B14] gi|299775891|gb|EFI72471.1| NOL1/NOP2/sun family protein [Prevotella bryantii B14] Length = 466 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 111/306 (36%), Gaps = 22/306 (7%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201 +P+ F + G++ + + + + L+ + Sbjct: 1 MNLPKEFVSYTRDLMGEKLFSTLEKGLKQDPVTSIRINPYKLKERRFQIANLDESVAWCK 60 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQ 258 + + P GV++VQ+AS+ + +LDLCAAPGGKT Sbjct: 61 HGMYLKSRPNFTFDPLLHAGVYYVQEASSMFLEHVLRQILDETPILMLDLCAAPGGKTTV 120 Query: 259 LI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDA 314 G+ + A + + R L N+ + + DY LFD ++ D Sbjct: 121 ARSILPEGSLLFANEPIRTRSNILAENIQKFGHPDVIVTNNYPKDYKKTDLLFDIIVADV 180 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS G R+ + ++ QR+++ + +K GI+++S C+ + ++ E Sbjct: 181 PCSGEGMFRKDQGAIEEWSQKNVENCRNLQREIIQDIWNNLKKDGILIYSTCTFNAKEDE 240 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 E V ++ V +++ + + + ++ R P + G F Sbjct: 241 ENVDWIVNELGAEYISVDIDNNWPITPSL---INEHPVYRFIPGKTKGE--------GIF 289 Query: 435 AVALRR 440 LR+ Sbjct: 290 MAVLRK 295 >gi|47217434|emb|CAG10203.1| unnamed protein product [Tetraodon nigroviridis] Length = 337 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 53/284 (18%) Query: 207 ELPESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---I 260 ++ E + P F + + ++Q+ + + + G VLD+CAAPGGKT + + Sbjct: 56 QMVEPLYQSPSFDQILPSLVFLQNLPSVVVGHVLGPRPGERVLDMCAAPGGKTCHMAALM 115 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD-------------YCPKKLF 307 +V ALD K ++ ++ N L L + ++ P + F Sbjct: 116 GDQGEVVALDRIKNKINRILENAQVLQLRSIKAFCFNSTQAVSTDAAPHAEEPPFPPESF 175 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL+DAPCS G + P + T +I QRKL + +K GG++V+S C+ Sbjct: 176 DRVLLDAPCSGLG---QRPIMGSTWSLKEICSYQPLQRKLFQAAVQLLKKGGVLVYSTCT 232 Query: 368 LDKQDSEEVVQKVLRSSPI--------------------PVELVPLNSAYWKSIDMAMAL 407 + ++EE V L++ P P L Sbjct: 233 VTLAENEEQVAWALQTFPCLSLQPQVRRPSQSGTSVIGPSPLCFPQEPHIGAGGMQGAGL 292 Query: 408 SPEGWI---RITPDML------EKIDGVSSGMD--GFFAVALRR 440 SPE R P++ + D GFF + Sbjct: 293 SPEQLRLLQRFRPELSWDQSRAAASLPHRADTDTIGFFIAKFLK 336 >gi|147811154|emb|CAN70164.1| hypothetical protein VITISV_039256 [Vitis vinifera] Length = 906 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 39/322 (12%) Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 FA + ++ I + PE ++ Y + ++ Sbjct: 42 GWEPFATQNPAFDEYYKATDGGEVEAIRPLPWYPENL--AWQSNYSRMQLRKNQTLERFH 99 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 ++ + T ++ V + + L S+ +++ +P Sbjct: 100 EFLKQENEIGNITRQEAVSMVGQLYKFVIFELLVVSLEKFESLGIYSFFII----VVPPL 155 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDVSKRRLEKLRCNLD 284 + VLD+CAAPG KT Q + G V A DV +R L Sbjct: 156 FLDVSPDHFVLDMCAAPGSKTFQLLEIIHRSTKPGTLPGGMVVANDVDVKRCNLLIHQTK 215 Query: 285 RLHLYAEDIIEMDAFDYC----------------------PKKLFDAVLVDAPCSSTGTI 322 R+ + +A + + +FD VL D PCS GT+ Sbjct: 216 RMCTANLIVTNHEAQHFPGCXLNKLSSDSSEIGVVKEQSMSQLMFDRVLCDVPCSGDGTL 275 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R+ PD+ + C Q ++ ++GIS +K GG +V+S CS++ ++E VV ++LR Sbjct: 276 RKAPDIWRKWNVGMGNGIHCLQVQIAMRGISLLKVGGRMVYSTCSMNPVENEAVVAEILR 335 Query: 383 SSPIPVELVPLNSAYWKSIDMA 404 VELV ++ + + Sbjct: 336 RCGGSVELVDVSCELPQLVRRP 357 >gi|316975082|gb|EFV58541.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Trichinella spiralis] Length = 683 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 61/274 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---------KVTALDVSK 273 Q+A + IP ++ S+LD+CA+PG KT QLI V A D++ Sbjct: 175 LSRQEAVSMIPPLFMDIKSHHSILDMCASPGSKTVQLIEMLHADGEALPTGFVIANDLNN 234 Query: 274 RRLEKLRCNLDRLHLYAEDIIEM-------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 +R L R +I D F K FD +L D PCSS GT+R++ Sbjct: 235 KRCYLLVHQSLRRSSSPCCVITNCDASQFPDKFGKLTKLKFDRILCDVPCSSDGTLRKNL 294 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----- 381 ++ + QRK++ +G+ + GG++V+S CS++ + E V+ ++L Sbjct: 295 NLWKEWHVNQAYALHRLQRKIVERGLHLLATGGLLVYSTCSMNPAEDEAVITQILIYSQG 354 Query: 382 -----------------------------RSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 + + I + E Sbjct: 355 MSCRIGGCWKSTTRISPFKGLVVCFKVLDAEGNVYASPDEVPDELKSKIHNGLFPPDENV 414 Query: 413 ---IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +RI P GFF LR++ + Sbjct: 415 AENLRIFPHHQ--------NTGGFFIAVLRKVGE 440 >gi|315608815|ref|ZP_07883791.1| NOL1/NOP2/sun family protein [Prevotella buccae ATCC 33574] gi|315249509|gb|EFU29522.1| NOL1/NOP2/sun family protein [Prevotella buccae ATCC 33574] Length = 432 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 110/305 (36%), Gaps = 21/305 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201 +P+ F++ G + + + + A + A + Sbjct: 1 MNLPKDFEQYTRRLMGDALYDTLCRGLDDVPPVSIRLNPFKCGGAAMAATRGEAGVPWCA 60 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQL 259 + P G+++VQ+AS+ + LDLCAAPGGK+ Sbjct: 61 EGVYLRERPNFTFDPLLHAGLYYVQEASSMFVAHVLRSLVSGPVLALDLCAAPGGKSTCA 120 Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315 + +G+ + A + K R + L N+ + + A + FD +L D P Sbjct: 121 MGALPAGSVLCANEPVKPRAQILAENVQKFGHPDIIVTANFAADYARTRLDFDIILADVP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + D++ + QR ++ +KPGG++++S C+ + +++EE Sbjct: 181 CSGEGMFRKDEGAVAEWSADNVERCRRLQRDIVADIWPRLKPGGLLLYSTCTFNARENEE 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + + +P+ +A+ + R P G F Sbjct: 241 NAEWIADQLGADFVEIPVEAAWNIT---GSLTDDRPMYRFIPGKTRGE--------GLFM 289 Query: 436 VALRR 440 LR+ Sbjct: 290 AVLRK 294 >gi|66803617|ref|XP_635647.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] gi|60463974|gb|EAL62137.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] Length = 501 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 102/265 (38%), Gaps = 48/265 (18%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA----------------- 257 L E ++Q + V ++D+CAAPGGKT Sbjct: 245 LNSVLEDKMFLQHLPSIYTVYQLEPKLGDKIIDMCAAPGGKTTLIASLIQQFEINNNQNN 304 Query: 258 ----QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA--------------F 299 ++ ALD +K +++K+ RL L Sbjct: 305 QKYQNNNEIKTEIFALDKNKGKVKKIIDLCKRLSLDKYVTCLAKDSSKLTKENQQDPLDK 364 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD VL+D PCS G+ P ++ + D+ S+ FQ+KL+ Q +S +KPGG Sbjct: 365 IRFQSNSFDKVLLDGPCSGLGS---RPRLIESSSLVDLTNSSEFQKKLIDQAVSLLKPGG 421 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RIT 416 I+V+S CS++ +++E V +L + P ++L+P + L+ + R Sbjct: 422 ILVYSTCSINPEENELNVSYLLNNYP-EMKLIPQIPHISQPGLPNCGLTEQQCKLVSRFD 480 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P G GFF ++ Sbjct: 481 PSDSNI------GTIGFFIAKFTKI 499 >gi|320101269|ref|YP_004176861.1| Fmu (Sun) domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753621|gb|ADV65379.1| Fmu (Sun) domain protein [Desulfurococcus mucosus DSM 2162] Length = 380 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 23/238 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVT 267 + L +++G+++ Q + ++ G V+D+ A+PGGKT+ ++ V Sbjct: 155 RLSELDIYSQGLFYPQGYPSIGTSRILGPEPGELVVDMNASPGGKTSHIVQLTRGRALVV 214 Query: 268 ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTI 322 A D S ++EKL+ L L L + D+ D VLVD PCS+ G Sbjct: 215 AFDRSPGKVEKLKETLTNLGLNLNVIAVPYDSRYAHLDFKLAGKADRVLVDPPCSNLGV- 273 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 P ++ R D+ + +QR+ L VKPGG +V+S C+L +++EE + + Sbjct: 274 --RPRLVDDRGVRDVASLSSYQRQFLKAAARVVKPGGYIVYSTCTLTLEENEENIVYAVE 331 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + + + + + +S M G F LR+ Sbjct: 332 ELGLESVELESSPPFSEKTSYRGVVG------------YRYTPLSGDMPGHFIALLRK 377 >gi|219125377|ref|XP_002182959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405753|gb|EEC45695.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 511 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 96/270 (35%), Gaps = 70/270 (25%) Query: 244 SVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLDLC++PG KT Q ++ + +V A DVS+ RL LR + R L + Sbjct: 242 RVLDLCSSPGSKTLQALEIVGTKGRVVANDVSETRLTALRGAVGRSGLPESYTDRIVYSC 301 Query: 301 YCPKKL-------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 +L +DA + D PCS GT R+ VL + Q K+LL+ + Sbjct: 302 QDATQLILTTTRLWDAAMCDVPCSGDGTCRKDKHVLPMWKPSHGNELHQTQVKILLRALR 361 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL----------------NSAY 397 +VKPGG+V +S CSL+ + E VV L +L P A Sbjct: 362 WVKPGGVVCYSTCSLNPIEDEAVVAAALLHLRGDDKLAPAVEVIEWPHPTGFTGRPGIAN 421 Query: 398 WKSIDMAMALSPEG------------------------------WIRI-TPDMLE----- 421 WK D S +G ++ P M Sbjct: 422 WKVADYPRDASDKGLTDEVGVGSGDDGETPRLQWYETYSEAKDAGMQCALPSMWPPEKTT 481 Query: 422 --------KIDGVSSGMDGFFAVALRRLIQ 443 ++ GFF LR+ + Sbjct: 482 DLHLERCTRLWPQDQDTGGFFLALLRKTAK 511 >gi|156545330|ref|XP_001605827.1| PREDICTED: similar to williams-beuren syndrome critical region protein [Nasonia vitripennis] Length = 734 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 69/418 (16%), Positives = 143/418 (34%), Gaps = 50/418 (11%) Query: 49 VRAIVNVTLRFLPRIDAVLDF---VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105 + A+V+ TL + +++D ++ + R L RV + ++L+ Sbjct: 47 IYALVSETLHHCKELQSIIDQTEILIENP--RFDPW---LARVLITELLW---------- 91 Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 + ++ + + ++ + A + + + + Sbjct: 92 ------GKKVLKSEAKPILTVLNYKEKLQQALVQNPDAAVDPCDKKKVKLPRYVRVNTLL 145 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES----------IVSL 215 +I +A + + ++ L + +++ Sbjct: 146 TSIDEALSAFAEDGWRLLPRCYSYTSHLKTISNMGYDNFIQDFHIPEVLIFPPGTKFHDH 205 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272 PG+ G +QD ++ +P L N V+D+C+APG KT +I + K+ A+++ Sbjct: 206 PGYLSGKLLLQDKASCLPAFLLNPKPNSEVMDMCSAPGMKTTHLAAVINNEGKIYAIEMK 265 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLW 330 R L + + + I+ DA P+ + +LVD CS +G + R Sbjct: 266 DTRYRTLCDFVTNANASCVETIQADALTISPEFYPNIEYILVDPSCSGSGMVDRIEIRKE 325 Query: 331 TRDTDDIV--KSACFQRKLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 ++ K Q +L + F P VV+S CS+ +++E VV + + Sbjct: 326 DQNNLYNRLGKLQSLQSMILNHALKF--PNAKRVVYSTCSIYPEENECVVDEAMTKFGDI 383 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 LV L + + D GFF +R +PK Sbjct: 384 YNLVDLK----RKLKNEWISFGSAEYSYYGDKCLYARPEVDHCSGFFLAVFQR--KPK 435 >gi|291236130|ref|XP_002738014.1| PREDICTED: NOL1/NOP2/Sun domain family, member 5-like [Saccoglossus kowalevskii] Length = 697 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ 235 + I + + + K L + + + + +G +QD ++ IP Sbjct: 348 MNITMDGYQCVSSLKKKQFMKDLHFDDLLVFAPNTDLHDNVLYQQGDIILQDKASCIPAH 407 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 + V+D CAAPG KT+ +I + K+ A D+ +R+ + + + Sbjct: 408 VLCPPLGSHVIDTCAAPGNKTSHLASIINNTGKIYAFDLDTKRIGTMGNLTAKAGVMNTQ 467 Query: 293 IIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVL--WTRDTDDIVKSACFQRK 346 + D P + + +LVD C+ +G + R+ ++ + + FQ Sbjct: 468 LFNQDFLKTNPTDNKFQKVEYILVDPSCTGSGIVNRNDHLMGAQGITKARLRSLSSFQVM 527 Query: 347 LLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +L + F +K VV+S CS+ ++++E+VV +VL+ + + W + Sbjct: 528 ILKHAMEFPNLK---RVVYSTCSVHREENEDVVAEVLKCNKNFA--LKTVMPSWTHRGLE 582 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + IR +GFF R Sbjct: 583 GTDVGKHCIR--------ASANVDFTNGFFVALFER 610 >gi|34540254|ref|NP_904733.1| NOL1/NOP2/sun family protein [Porphyromonas gingivalis W83] gi|34396566|gb|AAQ65632.1| NOL1/NOP2/sun family protein [Porphyromonas gingivalis W83] Length = 468 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 22/288 (7%) Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGF 218 A A SP + + + + + S + P F Sbjct: 19 EAEAFFAALDSPAPVSIRRNPNKPGIGTTVMDLPTNKSVPWCPLGTYLAERPSFTNDPVF 78 Query: 219 AEGVWWVQDASASIPVQLFGT--LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSK 273 G ++VQ+AS+ QL + + LDLCA+PGGK ++ G+ + + +V Sbjct: 79 HAGGYYVQEASSMFLWQLKPLLGESPVRALDLCASPGGKSTLLTNILPEGSVLVSNEVIH 138 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R L N+ + + E D + FD +LVDAPCS G R+ Sbjct: 139 HRANILAENMIKWGYPTGIVTEADPDRLKSAGETFDFILVDAPCSGEGMFRKDEATRSEW 198 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++ A Q+++L ++PGG++ +S C+ + ++E+ + ++ + + Sbjct: 199 SLQNVELCARRQQRILSAAWEMLQPGGLLAYSTCTFNTLENEDNLAFLIDTFGAEPVALD 258 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + + + R P + GFF +R+ Sbjct: 259 VLTEWQIAPQLK---GEAPAYRFFPHKVAGE--------GFFFCLVRK 295 >gi|326435915|gb|EGD81485.1| hypothetical protein PTSG_02202 [Salpingoeca sp. ATCC 50818] Length = 510 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 80/453 (17%), Positives = 153/453 (33%), Gaps = 46/453 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ +L V + + ++ L +LL A+V TL++ +DA++ Sbjct: 8 AAGVLERVRQHKGTIKTLCLEAEYKQKKKLL---------ALVCQTLKYQRAVDAIIAK- 57 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L ++ ++L RV +L V E R K + ++ Sbjct: 58 -AQLLEKEPTLSKELARVLCHDLLIGGV--LRCTGSLYEAIMRHK--DELQTALADLMAE 112 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + L +P + + + A+ + + T Sbjct: 113 RGVDTASALAEDTLAESMPRYARVNPLKQPEAATLTALEETGFQLQQLHAAGPKSTTTLE 172 Query: 191 HKLNAVMLPTGGIRL-KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 + + L + + G +QD ++ P + +D C Sbjct: 173 SRQHYFKDTHLDNLLGFHPRTDFHTHWLYRRGHLILQDKASCFPAAILAPPPGSVCIDAC 232 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 AAPG KT+ L + + V A D+S+RR+ +R L + + D P Sbjct: 233 AAPGNKTSHLAALMHNKGTVFAFDISRRRMGVMRRQLKLAGVTCVKTMLKSFLDTDPTHP 292 Query: 307 F----DAVLVDAPCSSTGTIRR-----------HPDVLWTRDTDDIVKSACFQRKLLLQG 351 +L D CS +G + R P + + + A FQ +++ Sbjct: 293 KFRDVKYILCDPSCSGSGIVSRLSDLVDVSDAGEPQTQEEKQQERLKALAEFQVQVVNHA 352 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 +SF V +S CS+ ++++E+VV VL ++P EL ++ + S Sbjct: 353 LSFPNVE-RVTYSTCSVHQEENEDVVAAVLAANP-SFELAEALPSWHRRGHSDTLPSAAM 410 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 +R P +GFF R +P Sbjct: 411 CVRTDP--------AQDFTNGFFVALFVR--KP 433 >gi|332820889|ref|XP_001144101.2| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1 [Pan troglodytes] Length = 531 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +++D +D +L D PCS GT+R++ DV T + ++ Q Sbjct: 5 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400 ++ +G + GG +V+S CSL+ + E V+ +L S +EL +++ Sbjct: 65 RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124 Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431 I ++ +G +I P M +I Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184 Query: 432 GFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205 >gi|332228172|ref|XP_003263269.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 3 [Nomascus leucogenys] Length = 531 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +++D +D +L D PCS GT+R++ DV T + ++ Q Sbjct: 5 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400 ++ +G + GG +V+S CSL+ + E V+ +L S +EL +++ Sbjct: 65 RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124 Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431 I ++ +G +I P M +I Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184 Query: 432 GFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205 >gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4] gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4] Length = 155 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + +L V L+ + L + ++V TL + Sbjct: 1 MSRRR-AREAALMVLFQVDVGGAVPEEALERTLAE---WRLGNASREFATSLVLGTLAYR 56 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 P+ID V++ + L R + ++R+++ ++L+ D+ ++ AVE AKR Sbjct: 57 PQIDRVIEELSQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELAKRYGGEE 116 Query: 119 HFAKLVNSILRR 130 + VN IL + Sbjct: 117 S-PRFVNGILGK 127 >gi|193786238|dbj|BAG51521.1| unnamed protein product [Homo sapiens] Length = 531 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +++D +D +L D PCS GT+R++ DV T + ++ Q Sbjct: 5 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400 ++ +G + GG +V+S CSL+ + E V+ +L S +EL +++ Sbjct: 65 RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124 Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431 I ++ +G +I P M +I Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184 Query: 432 GFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205 >gi|119628511|gb|EAX08106.1| NOL1/NOP2/Sun domain family, member 2, isoform CRA_b [Homo sapiens] Length = 531 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +++D +D +L D PCS GT+R++ DV T + ++ Q Sbjct: 5 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400 ++ +G + GG +V+S CSL+ + E V+ +L S +EL +++ Sbjct: 65 RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124 Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431 I ++ +G +I P M +I Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184 Query: 432 GFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205 >gi|298712110|emb|CBJ32991.1| conserved unknown protein [Ectocarpus siliculosus] Length = 605 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 I + P + G + +Q A++ PV VLD+ AAPGGK+ + + + V Sbjct: 428 PIGATPEYLAGHYMLQSAASMCPVMALAPQQGERVLDMSAAPGGKSTYIAQLMRNTGVVI 487 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 A D+ +R NL RL + + D K + D VL+DAPCS G I R Sbjct: 488 ANDLRPQRQRATVANLHRLGVRNALVCCHDGRKIPFKGV-DRVLLDAPCSGLGVISRDQS 546 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEE 375 V R T DI++S+ Q++LL + V GG++V+S CS+ ++E+ Sbjct: 547 VKIQRTTKDILRSSHLQKELLCAAVDAVSAKSATGGVIVYSTCSVSVAENEQ 598 >gi|321470952|gb|EFX81926.1| hypothetical protein DAPPUDRAFT_317133 [Daphnia pulex] Length = 449 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 63/453 (13%), Positives = 155/453 (34%), Gaps = 45/453 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +L ++ SL L+ S FR + + A+V + + +D +++ Sbjct: 23 RKAARILKSAEERKGSLKNLI----YSSGFRDVKP-----LYALVAESCKHQIELDELVN 73 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQIL----YLDVADYAVVDLAVEQ--AKRDKENRHFAK 122 L + L R+ + ++L YL + + + +E R + ++ Sbjct: 74 NTA--GLQNVQPFDPYLARILITELLWGKGYLKPENARAIRIILELENDLRQALDSMKSQ 131 Query: 123 LVNSILRRVSREKIELLQR--IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N + ++S + + + + E + K++ Sbjct: 132 EENDSVHQISAPRYVRVNTLVSTTEKVCTKLIAEGWKQVKSKKKTGYEG----------- 180 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 +++ + + + + + G +QD ++ + T Sbjct: 181 -FIERVKSLSENEFIMDFHLDFLLVFPSSAQFHNHDLLRNGSILLQDKASCLSAVALQTK 239 Query: 241 NNL-SVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 ++D C+APG KT+ L + + + A++ +R LR + + Sbjct: 240 PFYGKMIDACSAPGMKTSLLAALSNNQSSIIAIERDAKRCNTLRQTVSNARASKVSVQRA 299 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD------DIVKSACFQRKLLLQ 350 D + P D + S +GT + + + + + + Q +L+ Sbjct: 300 DFLNLDPSDYQDVKYILVDPSCSGTGIVNRLDPKRKQEEGASLELRLKRLSSLQSRLVEH 359 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 +F +V+S CS+ ++++E VV++VL L + + + P+ Sbjct: 360 AATFPSVE-RIVYSTCSIHEEENEAVVRQVLSKIGNSFRLDEALPWWPRRGTNSYDNPPD 418 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 I + + + +GFF R+ + Sbjct: 419 DIIGL---KCVRAEAEKDLTNGFFIALFVRVGE 448 >gi|219124772|ref|XP_002182670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406016|gb|EEC45957.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 840 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 7/191 (3%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----IVSGAKVTALDVSKR 274 G Q+ + IP + T N SVLD+CAAPG KT+Q+ + A D + + Sbjct: 171 DCGHITRQETVSMIPPVVLNTQPNDSVLDMCAAPGSKTSQILEQLDGPRGCLVANDANPQ 230 Query: 275 RLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R L L R+ I DA + FD +L DAPCS GT R++ V T Sbjct: 231 RAYMLTHQLRRIMHVNPVVMITACDAQFFPAVTQFDKILADAPCSGDGTSRKNIGVWKTW 290 Query: 333 DTDDIVKSACFQRKLLLQ-GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + Q ++ + ++ GG + +S CS++ ++E VV ++LR +ELV Sbjct: 291 TQVGALGLHTLQVEIAWKGASQLLRVGGDLCYSTCSMNPMENEAVVAELLRRGQGQLELV 350 Query: 392 PLNSAYWKSID 402 P+ +++ Sbjct: 351 PITLQGFRTRP 361 >gi|157961750|ref|YP_001501784.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Shewanella pealeana ATCC 700345] gi|189045730|sp|A8H3W2|RSMF_SHEPA RecName: Full=Ribosomal RNA small subunit methyltransferase F; AltName: Full=16S rRNA m5C1407 methyltransferase; AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase rsmF gi|157846750|gb|ABV87249.1| putative RNA methylase, NOL1/NOP2/sun family [Shewanella pealeana ATCC 700345] Length = 488 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 16/201 (7%) Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+ +APG KT Q+ + + + A + S R++ L N+ R+ + + DA + Sbjct: 131 VLDMASAPGSKTTQIAALMKNQGLLIANEYSASRVKVLHANVARMGVANCALTHFDARVF 190 Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD++L+DAPCS GTIR+ PD L D +D Q+ L+ +K GG Sbjct: 191 GEYMFETFDSILLDAPCSGEGTIRKDPDALKNWDNNDDKGIVETQKALIESAFLALKVGG 250 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S C+L +Q++++V + VE L + + ++ A + EG++ + P + Sbjct: 251 SLVYSTCALSRQENQDVCHHLKSLYGDAVEFGSLATLFPQA---DKACTEEGFLHVWPQI 307 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 + GFF + + Sbjct: 308 YDSE--------GFFVAKIYK 320 >gi|325913844|ref|ZP_08176203.1| NusB family protein [Xanthomonas vesicatoria ATCC 35937] gi|325539919|gb|EGD11556.1| NusB family protein [Xanthomonas vesicatoria ATCC 35937] Length = 241 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 16/233 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +G+ +RL ++H+L+ V + SL L A RD+ LV AI LR P Sbjct: 8 AGVASRLAAAHVLTAVFDQGRSLKAELAAALPGIA----DPRDRALVEAICFAVLRRRPA 63 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 D L + LP + L+ LL AQ+ L + +A + VE + R A Sbjct: 64 YDVALRQWMERPLPPRDAELKALLMAGFAQLDVLQLPAHAALSATVEACRALGRPRQ-AG 122 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY-GKERVLAISDACISPLYIDLT 181 +VN+ILRR RE + AG P W +++L + + + ++ A ++P+++ + Sbjct: 123 MVNAILRRAQREGFPAVSDDAGW---PSWLRKQLRADWGEQAEAIFVASAQMAPMWLRVH 179 Query: 182 V-KFDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQD 227 + D + +L + + + + LPGFA+G VQD Sbjct: 180 RGRTDPAAYVARLEEAGISAQTDTVLPDALRLQSAVPVSQLPGFAQGDVSVQD 232 >gi|302795624|ref|XP_002979575.1| hypothetical protein SELMODRAFT_111166 [Selaginella moellendorffii] gi|300152823|gb|EFJ19464.1| hypothetical protein SELMODRAFT_111166 [Selaginella moellendorffii] Length = 425 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 27/289 (9%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL--PGFAEGVWWVQD 227 A + ++ L +K ++ L + + + + + E + + Sbjct: 113 KAALRAAFVRLMMKKNVTEIDGLLPTESRQLQSYIPRYVRVNTLQITVDEALEKLEELGS 172 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 ++ IP + + VLD CA+PG KT L + +VTA ++ K+RL+ L+ + Sbjct: 173 KASCIPAHVLSPDPDWEVLDACASPGNKTVHLAALMKGKGRVTACELHKKRLQVLQDTVK 232 Query: 285 RLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDV---------LWT 331 R + D P + A+L+D CS +GT + D + Sbjct: 233 RAGANNIQVKHQDFLKLDPNASDYRKVRAILLDPSCSGSGTTVQRMDHLLPVANGQSFFQ 292 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 D I + A FQ+ L +SF VV+S CS++++++E+VVQ VL + + Sbjct: 293 HDAQRIDRLASFQKAALCHALSFPAVE-RVVYSTCSVNQRENEDVVQSVLEHARSHKFKL 351 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W + + + +R D + DGFF R Sbjct: 352 GTVLPNWPHRGLPVFDGAQHLLRT--------DALRDKTDGFFVALFVR 392 >gi|15835455|ref|NP_297214.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Nigg] gi|270285637|ref|ZP_06195031.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Nigg] gi|270289646|ref|ZP_06195948.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Weiss] gi|301337033|ref|ZP_07225235.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum MopnTet14] gi|8163331|gb|AAF73608.1| Nol1/Nop2/Sun family protein [Chlamydia muridarum Nigg] Length = 368 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 52/344 (15%) Query: 36 SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95 L +D+ + + + LR ++ ++ Sbjct: 32 KEHPALGSKDRQWINSRIFTILRHRRLLETLI---------------------------- 63 Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155 ++ E + + + + +I A + + E Sbjct: 64 --------LEEGKEISSQTLVEKVEEGVTENIEH-------FQHLPWAVRYSVSDDLAEC 108 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL-----KELPE 210 L YG+E + ++ + + V + + + + Sbjct: 109 LSADYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQEVLPFSSQRGAAPSSLRFDKRY 168 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270 + F G++ +QD S+ I ++ +VLD CA GGK+ VT D Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILVKDSDTVLDFCAGAGGKSLIFAQRAQHVTLHD 228 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + LE+ R L R + I + + V+VDAPC+ +G RRHP+ Sbjct: 229 SRPQALEEARQRLSRSGIKNFTIASLPLKQHGFSL----VVVDAPCTGSGVFRRHPEKKL 284 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 + ++ Q K+L Q ++V P G +V+ CSL K+++E Sbjct: 285 LFSKQLLKNNSVAQGKILKQAQTYVAPRGRLVYITCSLLKEENE 328 >gi|166154768|ref|YP_001654886.1| putative methyltransferase [Chlamydia trachomatis 434/Bu] gi|166155643|ref|YP_001653898.1| putative methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336042|ref|ZP_07224286.1| putative methyltransferase [Chlamydia trachomatis L2tet1] gi|165930756|emb|CAP04253.1| putative methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931631|emb|CAP07207.1| putative methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 368 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 67/364 (18%), Positives = 123/364 (33%), Gaps = 52/364 (14%) Query: 36 SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95 L +D+ + + LR ++A+ Sbjct: 32 KEHPSLGSKDRQWINTRIFTILRHRRLLEAL----------------------------- 62 Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155 V+ E + + + + +I + I + E Sbjct: 63 -------VLAEGKEISAQTLVEKVEEGVTENIEQ-------FQHLPWPVRYSISDDLAEC 108 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPE 210 L YG+E + ++ + + V + + P E Sbjct: 109 LTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAPSSLRFEKRY 168 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270 + F G++ +QD S+ I ++ +VLD CA GGK+ VT D Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARHVTLHD 228 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + LE+ R L R + I K F V+VDAPC+ +G RRHP+ Sbjct: 229 SRPQALEEARHRLPRSGIKNFTIPS----QPLKKHSFSLVVVDAPCTGSGVFRRHPEKKL 284 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + ++ Q K+L + +++V P G +V+ CSL K+++E+ + V+ Sbjct: 285 LFSKQLLHNNSIAQEKILKEALAYVAPRGRLVYITCSLMKEENEKHTSWMASQGWKCVKE 344 Query: 391 VPLN 394 V + Sbjct: 345 VKIP 348 >gi|119719678|ref|YP_920173.1| Fmu (Sun) domain-containing protein [Thermofilum pendens Hrk 5] gi|119524798|gb|ABL78170.1| Fmu (Sun) domain protein [Thermofilum pendens Hrk 5] Length = 443 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 85/448 (18%), Positives = 160/448 (35%), Gaps = 36/448 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +S ++ V R + SL + LS+ + V A+ +TL + L Sbjct: 17 RAASLVVERVQRWKASLDYSFQSVRKE---FNLSKPEARTVYALARLTLLNVGVAILALK 73 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + S +P ++ + V+VA +L + V L + + + ++ Sbjct: 74 KLGRSGIPLRR---KSAFYVAVALVLKYPGFEKRVESLRGGLVSNVLLSSITPRFLERLI 130 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC-ISPLYIDLTVKFDIE 187 RIA + +P E L G R ++ + +++ + E Sbjct: 131 EEAREL--GCRDRIAYLYSVPPLVSEVLVENLGCARAEEVARSFERRFVWLRAVGEKGRE 188 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGVWWVQDASAS---IPVQLFGT 239 L + + + ++ LP + + QD ++ + + G Sbjct: 189 KLEEFLVGLGIRFRRDPEIDGLYELLLPSYEPLPEVSPELAVYQDKASVAVVMELVKLGE 248 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + +D AAP K ++ A+D+S R+ R L I+ Sbjct: 249 TCVSTCIDAAAAPFMKTSLYCDARRCCDEILAVDISFNRIRDSRGVLLGCR-KIVHIVNS 307 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIVKSACFQRKLLLQGIS 353 D+ + LFD LVDAPC+++G I + P + W D +++ + QR++L + Sbjct: 308 DSRFLATRTLFDEGLVDAPCTNSGAIGKDPGLRLSLWELDREEVALYSTRQREILRNVLR 367 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 +K GG V +S CS+ ++ EEVV+ V + PL ++ Sbjct: 368 HMKHGGRVAYSTCSVLPEEGEEVVKDVAADGESSLLRPPLFFDEAYPRYGLRGVAT---- 423 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL 441 R PD FF L + Sbjct: 424 RTFPDKHRSEA--------FFIALLEKK 443 >gi|33416857|gb|AAH55530.1| Zgc:66176 [Danio rerio] gi|182890860|gb|AAI65602.1| Zgc:66176 protein [Danio rerio] Length = 483 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 82/445 (18%), Positives = 160/445 (35%), Gaps = 38/445 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M L ++ +L V +KR + DS F + Q + A+V T ++ + Sbjct: 1 MALYLKAAEILEKVEQKRG----AVKTLVYDSKFPNIKQ-----LFALVCETQKYSSVLQ 51 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++D L K + L +V V +L R + A++ Sbjct: 52 EIID--STKLLKETKLRIH-LAKVLVYDLLIGHGVKCGGAWKMTMLKHRARLQAALARIK 108 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +++ + + +IP + + ++ + + S Sbjct: 109 IKRKVSRNQDLLPSSIQQTQNDVIPRYVRVNTLKTSLEDVIDYLKREGFSYQGTP-GRLE 167 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D++ + K+ L + + + G +QD ++ +P L Sbjct: 168 DLDRLSGKMFLCDLHLKDLLVFSGKTDFHDHFLYKAGHIILQDKASCLPAFLLNPPVGSH 227 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ ++ + K+ A D+ +RL + L R + + D Sbjct: 228 VIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKV 287 Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF--V 355 P+ +L+D CS +G + ++ T++ + A FQ L + F + Sbjct: 288 DPQNSEYKEVKYILLDPSCSGSGMVCLLDELPETQEDGRLQALAAFQLHCLNHALQFPQL 347 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 + +V+S CS+ Q++EEVV L+ +P LV L + + + +R Sbjct: 348 E---RIVYSTCSIHSQENEEVVTACLQQNPG-FRLVHLLPDWPERGHEPLT----QCLR- 398 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + GFF L R Sbjct: 399 -------ASTAKTRTHGFFVAMLER 416 >gi|288926917|ref|ZP_06420816.1| NOL1/NOP2/sun family protein [Prevotella buccae D17] gi|288336315|gb|EFC74697.1| NOL1/NOP2/sun family protein [Prevotella buccae D17] Length = 432 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 109/305 (35%), Gaps = 21/305 (6%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----DIETWAHKLNAVMLPTG 201 +P+ F++ G + + + + A + A + Sbjct: 1 MNLPKDFEQYTRRLMGDALYDTLCRGLDDVPPVSIRLNPFKCGGAAMAATRGEAGVPWCA 60 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVLDLCAAPGGKTAQL 259 + P G+++VQ+AS+ + LDLCAAPGGK+ Sbjct: 61 EGVYLRERPNFTFDPLLHAGLYYVQEASSMFVAHVLRSLVSGPVLALDLCAAPGGKSTCA 120 Query: 260 I---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDYCPKKLFDAVLVDAP 315 + G+ + A + K R + L N+ + + A + FD +L D P Sbjct: 121 MGALPEGSVLCANEPVKPRAQILAENVLKFGHPDIIVTANFAADYARTRLDFDIILADVP 180 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ + D++ + QR ++ +KPGG++++S C+ + +++EE Sbjct: 181 CSGEGMFRKDEGAVAEWSADNVERCRRLQRDIVADIWPRLKPGGLLLYSTCTFNARENEE 240 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + + +P+ +A+ + R P G F Sbjct: 241 NAEWIADQLGADFVEIPVEAAWNIT---GSLTDDRPMYRFIPGKTRGE--------GLFM 289 Query: 436 VALRR 440 LR+ Sbjct: 290 AVLRK 294 >gi|307169943|gb|EFN62452.1| Putative methyltransferase NSUN6 [Camponotus floridanus] Length = 462 Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 89/240 (37%), Gaps = 20/240 (8%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276 F +Q+ + I + ++LD+CAAPG KT + + ++ Sbjct: 225 EFLRPYALLQNLPSIICSLVLNPQPGETILDMCAAPGNKTTHISFLMKGQGKIIALEKNA 284 Query: 277 EKLRCNLDRLHLYAEDIIEMD----------------AFDYCPKKLFDAVLVDAPCSSTG 320 K + ++ + I D + FD +L+DAPCS+ G Sbjct: 285 GKAKRFKEKCNDENIKIFCYDATKAVVERGDSFVGNTDTPPFKQDHFDRILLDAPCSALG 344 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + P + T + QR L + +K GI+V+S C++ ++E ++ Sbjct: 345 ---QRPQLYNTITLAQLRSYIPLQRSLFSAAVRLLKQNGILVYSTCTITIAENEGIIAWA 401 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ P ++L + + + +G + + + D S GFF ++ Sbjct: 402 LKQFP-QLKLESVTDRIKTNRYGRQGYTIDGLVNENARKVCRFDTESIDSVGFFIACFKK 460 >gi|307565559|ref|ZP_07628039.1| NOL1/NOP2/sun family protein [Prevotella amnii CRIS 21A-A] gi|307345718|gb|EFN91075.1| NOL1/NOP2/sun family protein [Prevotella amnii CRIS 21A-A] Length = 439 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 108/237 (45%), Gaps = 11/237 (4%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNL--SVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P F G ++VQ+AS+ + + + LDLCAAPGGK+ G+ + A + Sbjct: 75 PLFHAGSYYVQEASSMFIDHIIRQYIHYPVTALDLCAAPGGKSTCAQSASPIGSTLIANE 134 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 +R + L N+ + + D+ K LFD ++ D PCS G R+ P + Sbjct: 135 PITKRAQILSENILKFGHSQIAVTNNFPKDFKKTKLLFDIIIADVPCSGEGMFRKDPKAI 194 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + +++ K QR ++ +K GG +++S C+ + ++EE V +++ + + Sbjct: 195 SSWSKENVKKCCQLQRSIIKDIWDNLKEGGFLIYSTCTFNSLENEENVAWIIKE--LGAK 252 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--KIDGVSSGMDGFFAVALRRLIQP 444 L+P+++ +I ++ +P T + + +G F L++ +P Sbjct: 253 LLPIHTEKEWNITGSLIGNPLNGADSTAQQFPVYRFLPGKTLGEGLFICLLQK-TKP 308 >gi|148227140|ref|NP_001090297.1| NOP2/Sun domain family, member 6 [Xenopus laevis] gi|114108045|gb|AAI23126.1| MGC154309 protein [Xenopus laevis] Length = 467 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 106/270 (39%), Gaps = 43/270 (15%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F G ++Q+ +++ + +LD+CAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLSGYIFLQNLPSAVVSHVLNPQPGERILDMCAAPGGKTTHIATLMEDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF---------------DYCPKKLFD 308 +V ALD ++EK++ N L L ++ + FD Sbjct: 260 GEVIALDKIASKVEKIKQNASVLKLKCIKAFCFNSTKAVRDQNCPDEQGDGPPFFPESFD 319 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+DAPCS G + P+++ ++ QRKL + ++PGG +V+S C++ Sbjct: 320 RILLDAPCSGMG---QRPNMVCPFSLKELTSYQPLQRKLFSAAVELLRPGGTLVYSTCTV 376 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDML----- 420 ++EE V L++ P ++L P M L P+ R P + Sbjct: 377 TLSENEEQVAWALKTFPC-LKLQPQEPHVGGEGMMGAELPPDQLKLLQRFDPSRVEFCSV 435 Query: 421 ----------EKIDGVSSGMDGFFAVALRR 440 + I + GFF + Sbjct: 436 DTNHCSAQPSDTIPLANKDTIGFFIARFLK 465 >gi|18314169|ref|NP_560836.1| sun family protein [Pyrobaculum aerophilum str. IM2] gi|18161759|gb|AAL65018.1| sun family protein [Pyrobaculum aerophilum str. IM2] Length = 414 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 80/439 (18%), Positives = 144/439 (32%), Gaps = 47/439 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L V ++L + + + +R + + Sbjct: 12 VAKVLYEVAANGLTLDYAFQKVKRNWRSLQSFKV----FYDVSFDAVRHYYFLKFAASKL 67 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 SS + + R +LY K+ R A+ ++ + Sbjct: 68 FGSSAMKAVAKAWFIYRADA--LLYNKDLVTRY--------KKRLLKRALARPEEALEQL 117 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETW 189 + S P+ L + E + + +++ + +K DI+ Sbjct: 118 EGLRDNAVEYLSVKYSYHPKIVSTLLSHLPQGEVERLLEAGNATWIWLRINTLKADIDKA 177 Query: 190 AHKLNAVMLPTGGIRLKE------LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L A ++ + L + QD ++ V Sbjct: 178 LRILEAEAEVEPHPKIPFVVLLKNAKRPVQYLEAVKRFLAIPQDLASIYAVLSLNPQPGD 237 Query: 244 SVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 ++DL AAPG KT+ QL AK+ A+D+S +R+ ++R L L + Sbjct: 238 RIIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVSRMRHLLKNLGAGGFVEVVRADSR 297 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD L+DAPC+S+G + P V +D K + Q+ LL +S Sbjct: 298 ALKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRLEDAPKYSKLQKALLKNALSL---ASE 354 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 VV++ CS+ ++ EEVV V A D+A + E R P + Sbjct: 355 VVYAVCSILPEEGEEVVTSV------------GAKAEKPLGDLASSYRGEVGGRTFPHV- 401 Query: 421 EKIDGVSSGMDGFFAVALR 439 + FF LR Sbjct: 402 -------HKSEAFFISRLR 413 >gi|76789290|ref|YP_328376.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis A/HAR-13] gi|237802982|ref|YP_002888176.1| putative methyltransferase [Chlamydia trachomatis B/Jali20/OT] gi|237804904|ref|YP_002889058.1| putative methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|76167820|gb|AAX50828.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis A/HAR-13] gi|231273204|emb|CAX10117.1| putative methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274216|emb|CAX11010.1| putative methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 368 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 66/364 (18%), Positives = 123/364 (33%), Gaps = 52/364 (14%) Query: 36 SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95 L +D+ + + LR ++A+ Sbjct: 32 KEHPSLGSKDRQWINTRIFTILRHRRLLEAL----------------------------- 62 Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155 V+ E + + + + +I + I + E Sbjct: 63 -------VLAEGKEISAQTLVEKVEEGVTENIEQ-------FQHLPWPVRYSISDDLAEC 108 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPE 210 L YG+E + ++ + + V + + P E Sbjct: 109 LTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAPSSLRFEKRY 168 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270 + F G++ +QD S+ I ++ +VLD CA GGK+ VT D Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARHVTLHD 228 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + LE+ R L R + I K F V+VDAPC+ +G RRHP+ Sbjct: 229 SRPQALEEARHRLSRSGIKNFTIPS----QPLKKHSFSLVVVDAPCTGSGVFRRHPEKKL 284 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + ++ Q ++L + +++V P G +V+ CSL K+++E+ + V+ Sbjct: 285 LFSKQLLHNNSIAQERILKEALAYVAPCGRLVYITCSLMKEENEKHTSWMASQGWKCVKE 344 Query: 391 VPLN 394 V + Sbjct: 345 VKIP 348 >gi|270013278|gb|EFA09726.1| hypothetical protein TcasGA2_TC011859 [Tribolium castaneum] Length = 425 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 100/269 (37%), Gaps = 22/269 (8%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 V + L I ++ G +Q+ + I + Sbjct: 170 VILGRNHLFCETPQTGLAIKMIETISSCPPVLGDNFLPPGAALLQNLPSIICTHVLAPCP 229 Query: 242 NLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 N ++LD+CA+PG KT + + ++ A+D + ++ +LR + +I++ D+ Sbjct: 230 NDTILDMCASPGNKTTHIAALLKNQGRLVAIDKTPTKVAQLRQRCENFGAK-VEILQTDS 288 Query: 299 FDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + + D +L+DAPCS+ G + P + T + QRKL + + Sbjct: 289 TKLLDRFCYESFDKILLDAPCSALG---KRPQFVNTTSRKILRSYVPLQRKLFETAVQLL 345 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GW 412 K G +V+S C++ ++E +V L++ +ELV L+ E Sbjct: 346 KTDGTLVYSTCTITLAENEGIVAWALKNFK--LELVEAAPILGGPGWDGTQLTSEQLKKV 403 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 R P GFF + Sbjct: 404 QRFGPHQSIDSV-------GFFIAKFVKK 425 >gi|296081680|emb|CBI20685.3| unnamed protein product [Vitis vinifera] Length = 626 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 91/457 (19%), Positives = 167/457 (36%), Gaps = 64/457 (14%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L CV++ + S S R++ A+V TL+ L I V Sbjct: 32 ARREAAKVLQCVLQGDAKRRAV---GSIKSLVYSPSVRNKKATFALVCQTLKHLSIIKDV 88 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LD L K + L+ + IL+ + + K + +L + Sbjct: 89 LD--SARILNAKWKRQEGLMYIITYDILF-----GQEISSVGDAEKFLLLQKDAIQL--A 139 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 + R + R+K++ ++ + + IP+ K R +K D+ Sbjct: 140 LARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNT--------------------LKLDV 179 Query: 187 ETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 E+ H+L + + + + P G ++Q ++S+ G Sbjct: 180 ESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPEP 239 Query: 242 NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD C+APG KT L + K+ A ++ R+++L + +++ D Sbjct: 240 GWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDF 299 Query: 299 ----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL----------WTRDTDDIVKSACFQ 344 A+L+D CS +GT D L T+ + K A FQ Sbjct: 300 LNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQ 359 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +K L +SF VV+S CS+ + ++E+V++ VL + + W + Sbjct: 360 KKALEHALSFPAVE-KVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPQWPRRGLP 418 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E +R P ++ GFF R Sbjct: 419 VFEGSEHLLRTHPVEDKE---------GFFIALFVRK 446 >gi|255348932|ref|ZP_05380939.1| putative methyltransferase [Chlamydia trachomatis 70] gi|255503472|ref|ZP_05381862.1| putative methyltransferase [Chlamydia trachomatis 70s] gi|255507150|ref|ZP_05382789.1| putative methyltransferase [Chlamydia trachomatis D(s)2923] gi|289525598|emb|CBJ15076.1| putative methyltransferase [Chlamydia trachomatis Sweden2] gi|296435158|gb|ADH17336.1| putative methyltransferase [Chlamydia trachomatis E/150] gi|296438878|gb|ADH21031.1| putative methyltransferase [Chlamydia trachomatis E/11023] Length = 368 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 67/364 (18%), Positives = 123/364 (33%), Gaps = 52/364 (14%) Query: 36 SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY 95 L +D+ + + LR ++A+ Sbjct: 32 REHPSLGSKDRQWINTRIFTILRHRRLLEAL----------------------------- 62 Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155 V+ E + + + + +I + I + E Sbjct: 63 -------VLAEGKEISAQTLVEKVEEGVTENIEQ-------FQHLPWPVRYSISDDLAEC 108 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-----LKELPE 210 L YG+E + ++ + + V + + P E Sbjct: 109 LTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKVLPFPCQRGAAPSSLRFEKRY 168 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD 270 + F G++ +QD S+ I ++ +VLD CA GGK+ VT D Sbjct: 169 PLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCAGAGGKSLIFAQRARHVTLHD 228 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + LE+ R L R + I K F V+VDAPC+ +G RRHP+ Sbjct: 229 SRPQALEEARHRLSRSGIKNFTIPS----QPLKKHSFSLVVVDAPCTGSGVFRRHPEKKL 284 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + ++ Q K+L + +++V P G +V+ CSL K+++E+ + V+ Sbjct: 285 LFSKQLLHNNSIAQEKILKEALAYVAPRGRLVYITCSLMKEENEKHTSWMASQGWKCVKE 344 Query: 391 VPLN 394 V + Sbjct: 345 VKIP 348 >gi|47086913|ref|NP_998450.1| NOP2/Sun domain family, member 5 [Danio rerio] gi|42542704|gb|AAH66371.1| Zgc:77183 [Danio rerio] Length = 435 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 80/445 (17%), Positives = 159/445 (35%), Gaps = 38/445 (8%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M L ++ +L V +KR + DS F + Q + A+V T ++ + Sbjct: 1 MALYLKAAEILEKVEQKRG----AVKTLVYDSKFPNIKQ-----LFALVCETQKYSSVLQ 51 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +++ L K + L +V V +L R + A++ Sbjct: 52 EIIN--STKLLKETKLRIH-LAKVLVYDLLIGHGVKCGGAWKTTMLKHRARLQAALARIK 108 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 +++ + + +IP + + ++ + + S Sbjct: 109 IKRKVSRNQDLLPSSIQQTQNDVIPRYVRVNTLKTSLEDVIDYLKREGFSYQGTP-GRLE 167 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D++ + K+ L + + + G +Q ++ +P L Sbjct: 168 DLDRLSGKMFLCDLHLKDLLVFSGKTDFHDHFLYKAGHIILQGKASCLPAFLLNPPVGSH 227 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ ++ + K+ A D+ +RL + L R + + D Sbjct: 228 VIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKV 287 Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF--V 355 P+ +L+D CS +G + ++ T++ + A FQ L + F + Sbjct: 288 DPQNSEYKEVKYILLDPSCSGSGMVCLRDELPETQEDGRLQALAAFQLHCLYHALQFPQL 347 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 + +V+S CS+ Q++EEVV L+ +P LV L + + + +R Sbjct: 348 E---RIVYSTCSIHSQENEEVVTACLQRNPG-FRLVHLLPDWPERGHEPLT----QCLR- 398 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + GFF L R Sbjct: 399 -------ASTAKTRTHGFFVAMLER 416 >gi|297741823|emb|CBI33136.3| unnamed protein product [Vitis vinifera] Length = 837 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 33/215 (15%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + +P + VLD+CAAPG KT Q + G V A DV Sbjct: 163 ITRQEAVSMVPPLFLDVSPDHFVLDMCAAPGSKTFQLLEIIHRSTKPGTLPGGMVVANDV 222 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------------LFDA 309 +R L R+ + +A + +FD Sbjct: 223 DVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCCLNKLSSDSSEIGVVKEQSMSQLMFDR 282 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL D PCS GT+R+ PD+ + C Q ++ ++GIS +K GG +V+S CS++ Sbjct: 283 VLCDVPCSGDGTLRKAPDIWRKWNVGMGNGIHCLQVQIAMRGISLLKVGGRMVYSTCSMN 342 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++E VV ++LR VELV ++ + + Sbjct: 343 PVENEAVVAEILRRCGGSVELVDVSCELPQLVRRP 377 >gi|189241190|ref|XP_001810247.1| PREDICTED: similar to GA10764-PA [Tribolium castaneum] Length = 516 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 27/344 (7%) Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 A R ++ + R ++ P+ + + + Sbjct: 187 AHRWIRAHIAGAGLDLRVERHPSCADAVIVHHPVSHQTPQKHNKEIVVDAVCGAA-VLRG 245 Query: 171 ACISPL----YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 A I + D + L+ I + +Q Sbjct: 246 AHIYAPGVIGMMSNIQIGDNVSIYVDLDKKCKKGFLKLYNGKKTFIGNGEVILGRAALLQ 305 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 + + I + N ++LD+CA+PG KT + + ++ A+D + ++ +LR Sbjct: 306 NLPSIICTHVLAPCPNDTILDMCASPGNKTTHIAALLKNQGRLVAIDKTPTKVAQLRQRC 365 Query: 284 DRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 + +I++ D+ + + D +L+DAPCS+ G + P + T + Sbjct: 366 ENFGAK-VEILQTDSTKLLDRFCYESFDKILLDAPCSALG---KRPQFVNTTSRKILRSY 421 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 QRKL + +K G +V+S C++ ++E +V L++ +ELV Sbjct: 422 VPLQRKLFETAVQLLKTDGTLVYSTCTITLAENEGIVAWALKNFK--LELVEAAPILGGP 479 Query: 401 IDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ E R P GFF + Sbjct: 480 GWDGTQLTSEQLKKVQRFGPHQSIDSV-------GFFIAKFVKK 516 >gi|326392334|ref|ZP_08213764.1| Fmu (Sun) domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991625|gb|EGD50187.1| Fmu (Sun) domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 170 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 5/165 (3%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLE 277 G++++Q+ +A V++ +LD+ AAPGGKT I + A ++ K+R++ Sbjct: 6 GLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKIGDEGIIVANEIDKKRIK 65 Query: 278 KLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L N++R+ + I + + FD +LVDAPCS G R+ P + Sbjct: 66 ALVENVERMGIRNIVITNETPEKLATAFEGYFDKILVDAPCSGEGMFRKDPTARKIWSLN 125 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 +++ + QR +L +K GGI+V+S C+ ++ E V++ Sbjct: 126 NVMSCSITQRNILRSVAPLLKKGGILVYSTCTFAPEEDEGVIKNF 170 >gi|34763759|ref|ZP_00144677.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886473|gb|EAA23730.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 196 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 97/201 (48%), Gaps = 19/201 (9%) Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFD 300 VLD+CAAPGGKTA + + + +V A+D+ + +++ + N+ +L + I +D Sbjct: 6 VLDICAAPGGKTAVLAEEMKNSGEVIAIDIHQHKIKLIDTNMKKLGIDIVKAIVIDAKNV 65 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD +LVD PCS G IR+ P++L++++ + + + Q ++L +K GG Sbjct: 66 NKQGRKFDKILVDVPCSGYGVIRKKPEILYSKNRESVEELTKLQLEILNSAADILKDGGE 125 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIP-VELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++S C++ +++ ++K L VE + + D Sbjct: 126 LIYSTCTITDEENTNNIKKFLEERKEFKVEKLYIPENVSGDYDNLGGF------------ 173 Query: 420 LEKIDGVSSGMDGFFAVALRR 440 I+ MD F+ + L++ Sbjct: 174 --CINYKEEIMDNFYIIKLKK 192 >gi|329296317|ref|ZP_08253653.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Plautia stali symbiont] Length = 443 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 115/268 (42%), Gaps = 37/268 (13%) Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPE--SIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + + +L + G+ + E + S+ G++++Q+AS+ +PV Sbjct: 40 TRVAGYGWQLTPIPWCREGLWIARDDESLPLGSVAEHFSGLFYIQEASSMLPVSALFDAA 99 Query: 242 N--LSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 V+D+ AAPG KT Q+ + + + A + S R++ L N+ R + + Sbjct: 100 PDAHQVMDVAAAPGSKTTQMAALMRNQGAILANEYSASRVKVLHANISRCGVSNVALTHF 159 Query: 297 DAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 D + FDA+++DAPC G +R+ D L A Sbjct: 160 DGRVFGAALPEQFDAIVLDAPCPGEGVVRKDADALRNWTLASTEAIAA------------ 207 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 +++S C+L+ ++++V+ + + P +E+VPLN + AL+PEG++ Sbjct: 208 -----TLIYSTCTLNTLENQQVIAWLQQRYPEALEIVPLNDLF---AGAERALTPEGFLH 259 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P +L+ GFF LR+ Sbjct: 260 VFPHILDSE--------GFFVARLRKTA 279 >gi|7020309|dbj|BAA91075.1| unnamed protein product [Homo sapiens] Length = 531 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 41/201 (20%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + +++D +D +L D PCS GT+R++ DV T + ++ Q Sbjct: 5 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400 ++ +G + GG VV+S CSL+ + E V+ +L S +EL +++ Sbjct: 65 RIATRGAEQLAEGGRVVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 124 Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431 I ++ +G +I P M +I Sbjct: 125 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 184 Query: 432 GFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 185 GFFVAVLVKKSSMPWNKRQPK 205 >gi|195019305|ref|XP_001984952.1| GH16775 [Drosophila grimshawi] gi|193898434|gb|EDV97300.1| GH16775 [Drosophila grimshawi] Length = 449 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 68/373 (18%), Positives = 128/373 (34%), Gaps = 35/373 (9%) Query: 86 LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145 L V+ + D +VD + A + ++ +E + + Sbjct: 89 LDVAAEDLPVDDHLKQVIVDTSCGAALLRGAHIFAPGVLAMESNTQLQELVNVY------ 142 Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRL 205 + +P K Y + + + + L + E + AV + + Sbjct: 143 ADLPGKCKRGTATRYVCDEKIFLGVGQVQMQRHQLYKNNEKEESSPTGIAVRMQRNISGV 202 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 L + G + + + + V++ G +LD+CAAPG KT + + Sbjct: 203 PTL-GDLSDANGLLQNL------PSIVCVRVLGPQPGERILDMCAAPGNKTTHMAELMGD 255 Query: 263 GAKVTALDVSKRRLEKLRCN------LDRLHLYAEDIIEMDAFDYCPKKL------FDAV 310 + ALD S RL ++ ++ A FD + Sbjct: 256 VGTIVALDNSANRLRAMQSKLANYSCIETHQFDATKAWHAAGNGPSSGPPPFASDSFDRI 315 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCS G R + + QR L+ Q + ++PGGI+V+S C++ + Sbjct: 316 LLDAPCS--GLGNRPQLCSNVKQAKVLQSYPHIQRNLMAQAVPLLRPGGILVYSTCTITE 373 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW---IRITPDMLEKIDGVS 427 + E++V LR P + + + LS E R P ++ + Sbjct: 374 AECEQLVAWTLRKFPQLRLMDATPKLGAPGLPLHPELSAEQCALLQRFGPSAENRVPNL- 432 Query: 428 SGMDGFFAVALRR 440 GFF ++ Sbjct: 433 -DTVGFFIAKFQK 444 >gi|4490751|emb|CAB38913.1| proliferating-cell nucleolar antigen-like protein [Arabidopsis thaliana] gi|7271055|emb|CAB80663.1| proliferating-cell nucleolar antigen-like protein [Arabidopsis thaliana] Length = 682 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 99/317 (31%), Gaps = 85/317 (26%) Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------L 259 E+I LP + + + W + S + L L G T Q Sbjct: 47 EAIKPLPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLETEAGNMTRQESVSMIMFISN 106 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------- 306 V +V A DV +R L R + + + Sbjct: 107 FVWLNQVVANDVDYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPH 166 Query: 307 ------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD VL D PCS GT+R+ PD+ ++ Q L ++G+S +K GG Sbjct: 167 PIDQLLFDRVLCDVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGR 226 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA---------------- 404 +V+S CS++ + E VV ++LR VELV ++ + I Sbjct: 227 MVYSTCSMNPIEDEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRS 286 Query: 405 ----MALSPEGWIR-ITP-----------------------------------DMLEKID 424 +G +R + P ++ +I Sbjct: 287 YKDVPKSQRDGVLRSMFPSGKSDKDSSGGKNSYEEMASISSDESAEEVCDLPLELCMRIL 346 Query: 425 GVSSGMDGFFAVALRRL 441 GFF L ++ Sbjct: 347 PHDQNTGGFFIAVLHKV 363 >gi|300709045|ref|XP_002996691.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01] gi|239606011|gb|EEQ83020.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01] Length = 362 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 117/291 (40%), Gaps = 18/291 (6%) Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + + + + I YI L + + L + Sbjct: 87 KFWKEKFESVKKENELFHVIKQKYIRLNTVKGVHSDISNLKLESTFIPNVYKLLEAVDFS 146 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALD 270 + EG +Q+ ++ +P + L N ++D CAAPG KT+ L + KV A++ Sbjct: 147 KNKAYKEGKIVIQNIASCLPAYILDPLPNSRIIDACAAPGNKTSHLSNLLKNTGKVYAIE 206 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 V +R + L ++++L L + I D FD P K + + S +G+ + Sbjct: 207 VDSKRFKILNYHVNKLGLKNVETINKDFFDIKPDKYSNIDYIVVDPSCSGSGMHD---FY 263 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +D + I FQ K+L +SF +V+S CSL K++ E+V+ +V++ E+ Sbjct: 264 EKDDERIKNLQKFQIKILKHALSFGAK--KIVYSTCSLHKEEGEDVINEVIK--DDKYEI 319 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + + + + ++R + + GFFA L + Sbjct: 320 FDLAKIFDNGVFNGIEV-KDKFVRC-------VSTNNKETIGFFAALLVKK 362 >gi|198464825|ref|XP_001353377.2| GA10764 [Drosophila pseudoobscura pseudoobscura] gi|198149898|gb|EAL30884.2| GA10764 [Drosophila pseudoobscura pseudoobscura] Length = 438 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 25/232 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT + + V ALD S R+ + Sbjct: 214 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHIAELMGDQGCVVALDNSASRV-RGMLG 272 Query: 283 LDRLHLYAEDIIEMDAF--------------DYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 + + D+ P FD +L+DAPCS G R + Sbjct: 273 KLGNNYRSIQAHVFDSTKAVAASSDSSCPSAPPFPCASFDRILLDAPCS--GLGNRPQLL 330 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + + QR+LL Q + ++PGGI+V+S C++ + + E +V LR P Sbjct: 331 CNIKQAKILKSYPNIQRRLLAQAVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELR 390 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + + + + + + G GFF ++ Sbjct: 391 LLDATPRYGGPGLPLPDLETAQSKL-----LQRFGPGNDLDTVGFFIAKFQK 437 >gi|195160569|ref|XP_002021148.1| GL24972 [Drosophila persimilis] gi|194118261|gb|EDW40304.1| GL24972 [Drosophila persimilis] Length = 438 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 25/232 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT + + V ALD S R+ + Sbjct: 214 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTTHIAELMGDQGCVVALDNSASRV-RGMLG 272 Query: 283 LDRLHLYAEDIIEMDAF--------------DYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 + + D+ P FD +L+DAPCS G R + Sbjct: 273 KLGNNYRSIQAHVFDSTKAVAASSDSSCPAAPPFPCASFDRILLDAPCS--GLGNRPQLL 330 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + + QR+LL Q + ++PGGI+V+S C++ + + E +V LR P Sbjct: 331 CNIKQAKILKSYPNIQRRLLAQAVQLLRPGGILVYSTCTVTEAECESIVAWALRKYPELR 390 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + + + + + + G GFF ++ Sbjct: 391 LLDATPRYGGPGLPLPDLETAQSKL-----LQRFGPGNDLDTVGFFIAKFQK 437 >gi|330835316|ref|YP_004410044.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567455|gb|AEB95560.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4] Length = 311 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 123/301 (40%), Gaps = 31/301 (10%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTG----- 201 +P W ER+ G + + ++ + +K D + L Sbjct: 32 LPRWIFERMYPLLGDNGMAGLYS---RRSWVRVNTLKGDRDEIIESLRVKGYSFSLDEDF 88 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQ 258 L + S F EG+ QD S++I V + ++L++ +PGGK Q Sbjct: 89 DFLLNWISPKPSSTDEFREGLIIPQDKSSAIVVSVLNPKPGENILEIGGSPGGKTSLIQQ 148 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSS 318 + + + V +LD+S++R+ R L + D+I D ++ + D +L+DAPCS+ Sbjct: 149 ITNNSSYVVSLDISEKRVNLQRRLLRLWGVENVDVILADGSNF-KVRKVDKILIDAPCSN 207 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 +GTI P + + ++ K QR++L S G +V+S CSL ++ E+ V+ Sbjct: 208 SGTINVDPSIPFRLTKTELNKLVRIQREILKNAFS---SGVEIVYSTCSLFPEEGEKQVE 264 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + V P + Y +S +R P + + GFF + Sbjct: 265 -IYSKYLEKVTNDPAHFGYKRSKVWMRV------MRTYPSLDQSE--------GFFISKI 309 Query: 439 R 439 + Sbjct: 310 K 310 >gi|295084881|emb|CBK66404.1| tRNA and rRNA cytosine-C5-methylases [Bacteroides xylanisolvens XB1A] Length = 510 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 9/231 (3%) Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P F G ++VQ+AS+ Q+ + +LDLCAAPGGK+ G+ + A + Sbjct: 92 PLFHAGCYYVQEASSMFVEQVLRQYVTGPVKMLDLCAAPGGKSTHARSVLPEGSLLVANE 151 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 V + R + L NL + + D D+ FD +L D PCS G R+ P + Sbjct: 152 VIRNRSQILAENLTKWGHPDVVVTNNDPADFAALPSFFDVILTDVPCSGEGMFRKDPVAV 211 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 ++++ QR+++ +KPGG++++S C+ + ++ EE + + + Sbjct: 212 EEWSSENVEICWQRQRRIIGDIWDTLKPGGVLIYSTCTFNTKEDEENARWIQQEYGAEPL 271 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V + + + D+ + + +G P + + +GFF VA R+ Sbjct: 272 TVQVQENWNITGDL-LPDNCDGSKSSIP--VYHFFPHKTKGEGFFLVAFRK 319 >gi|171688496|ref|XP_001909188.1| hypothetical protein [Podospora anserina S mat+] gi|170944210|emb|CAP70320.1| unnamed protein product [Podospora anserina S mat+] Length = 914 Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 61/242 (25%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------------PKKLFDAVL 311 + A D +R L L RL + DA Y FD +L Sbjct: 275 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPALRIPNPENPTKPNYLKFDRIL 334 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R++ ++ + Q ++L++ + +KPGG VV+S CS++ Sbjct: 335 ADVPCSGDGTLRKNVNLWKDWTPGSALGLHLTQVRILVRALQMLKPGGRVVYSTCSMNPV 394 Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT---------- 416 ++E VV + P +E++ ++ + M + R+ Sbjct: 395 ENESVVAAAIERCGGPDKIEILDCSNELPGLQRKPGMRKWQIMDKSERLWNTWQEVEEYT 454 Query: 417 --------P---------------------DMLEKIDGVSSGMDGFFAVALRR----LIQ 443 P D ++ GFF AL + + Sbjct: 455 KSTEDGVTPSRLVESMFPPAEGSDCADLPLDRCMRVYPHQQDTGGFFITALHKKAEFKAK 514 Query: 444 PK 445 P+ Sbjct: 515 PE 516 >gi|126465167|ref|YP_001040276.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1] gi|126013990|gb|ABN69368.1| Fmu (Sun) domain protein [Staphylothermus marinus F1] Length = 415 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 144/421 (34%), Gaps = 60/421 (14%) Query: 60 LPRIDAVLDFVLI-----SSLPRKKYSLQQLLRV----SVAQILYL------------DV 98 ++ +L + ++ K + LR+ I Y Sbjct: 15 KRLLNYILKAHISYDKAFRTIIHKYSFPRWALRIFYKVGYYTINYYYSLRWLSAKNGYGT 74 Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +++ + + R K L R R I+ + PE+ + L N Sbjct: 75 KPAGIINYFSKIGFSIRRARSLIKDEVKQLSRTKR--------ISLLHSYPEFLVKDLLN 126 Query: 159 FYGKERVLAISDACI-SPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELP------- 209 ++ + + ++ + +K E L+ + + Sbjct: 127 HMSEKELDKMLKNLNVRKRWLRINTLKISYEDAYKCLDETGIIYQKKDFPKYMVYVEHPK 186 Query: 210 -ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAK 265 + I G QD +++ V+ + LD C+APG K L + Sbjct: 187 WDPIGHNKCVKNGFIIPQDLASAYVVEALELEEDKYFLDACSAPGLKYSLAFMLTNNKLY 246 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDII--EMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 A+D+S +R+ + L RL + + I D+ + ++FD LVDAPCS G + Sbjct: 247 GFAIDLSSKRISIEQTLLKRLGVDSIRTILINADSRNIKLSRVFDYALVDAPCSGLGAVY 306 Query: 324 RHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 P V + + Q ++L + + + VV++ CS+ + E+V+++++ Sbjct: 307 SDPAVKLNTNRRSKLEQYHKKQYRILKNILRYAR---RVVYATCSIHPLEGEKVIERIV- 362 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR-RL 441 + E V +N + +S R+ P + GF+ L ++ Sbjct: 363 -NEGLAETVKINLPGLSTAYKGFNIS-NSTYRVLPHTMNSQ--------GFYIAVLESKV 412 Query: 442 I 442 Sbjct: 413 A 413 >gi|225468184|ref|XP_002271053.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 834 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 91/215 (42%), Gaps = 33/215 (15%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTALDV 271 Q+A + +P + VLD+CAAPG KT Q + G V A DV Sbjct: 163 ITRQEAVSMVPPLFLDVSPDHFVLDMCAAPGSKTFQLLEIIHRSTKPGTLPGGMVVANDV 222 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------------------PKKLFDA 309 +R L R+ + +A + + +FD Sbjct: 223 DVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNKLSSDSSEIGVVKEQSMSQLMFDR 282 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL D PCS GT+R+ PD+ + C Q ++ ++GIS +K GG +V+S CS++ Sbjct: 283 VLCDVPCSGDGTLRKAPDIWRKWNVGMGNGIHCLQVQIAMRGISLLKVGGRMVYSTCSMN 342 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 ++E VV ++LR VELV ++ + + Sbjct: 343 PVENEAVVAEILRRCGGSVELVDVSCELPQLVRRP 377 >gi|309805044|ref|ZP_07699100.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 09V1-c] gi|308165635|gb|EFO67862.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 09V1-c] Length = 246 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 5/244 (2%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKISYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGVLVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRS 383 +++ Sbjct: 241 LMKE 244 >gi|167533692|ref|XP_001748525.1| hypothetical protein [Monosiga brevicollis MX1] gi|163773044|gb|EDQ86689.1| predicted protein [Monosiga brevicollis MX1] Length = 789 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 62/287 (21%), Positives = 102/287 (35%), Gaps = 74/287 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------LIVSGAKVTALDVSKRR 275 Q+ + +PV + VLD+CA+PG KT Q + V A DV +R Sbjct: 153 LSRQEVVSMLPVAFLNIEPHHRVLDMCASPGSKTTQALEALHAQGNASGFVMANDVDAKR 212 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------------LFDAVLVDAPCSSTGTIR 323 L L L + ++ FD ++ D PC GT+R Sbjct: 213 AYILVRRLAPLGPACQKLVVTQHKAQKYPSLSHEREDRYLRGSFDRIICDVPCCGDGTLR 272 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + PD+ + Q ++ ++G+S ++PGGI+V+S C+ + + E VV +L+ Sbjct: 273 KSPDMWRRWHPGFAIGLHTLQLQIAMRGLSLLRPGGIMVYSTCTFNPLEDEAVVAALLQK 332 Query: 384 SPIPVELVPLNSA----------------------------------------------Y 397 VELV + + Sbjct: 333 CGGAVELVDCSGRHPDLARRPGVYSWKVYDDDMREFPDFAATQHDSVSPNTRKIMRPTMF 392 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 S D+A +L E +R P + + GFF LR+ +P Sbjct: 393 PPSPDVAESLCLERCMRFYPHLQD--------TGGFFVAVLRK-TKP 430 >gi|15489014|gb|AAH13625.1| Nsun2 protein [Mus musculus] Length = 521 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 41/201 (20%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 + + +D +D +L D PCS GT+R++ DV T + ++ Q Sbjct: 5 HDASSIPRLTVDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 64 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KS 400 ++ +G + GG +V+S CSL+ + E V+ +L S +EL +++ Sbjct: 65 RIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLKWMPG 124 Query: 401 IDMAMALSPEGWI-------------RITPDMLE----------------KIDGVSSGMD 431 + ++ +G +I P M +I Sbjct: 125 VSQWKVMTRDGQWFADWHEVPQGRHTQIRPTMFPPTDLEKLQAMHLERCLRILPHHQNTG 184 Query: 432 GFFAVALRRLI-------QPK 445 GFF L + QPK Sbjct: 185 GFFVAVLVKKAPMPWNKRQPK 205 >gi|313673239|ref|YP_004051350.1| fmu (sun) domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939995|gb|ADR19187.1| Fmu (Sun) domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 441 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 19/277 (6%) Query: 177 YIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGVWWVQDASASIP 233 Y L D++ + + PT + E I + F G ++Q+ S+ IP Sbjct: 31 YFRLNKARDVDYLKELNSYKISPTDIPNVFSYDEPNEIITNTISFLTGGIYIQNPSSVIP 90 Query: 234 VQLFG--TLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 + NN VLD+ AAPGGKT + + A + S RL+ L NL++ Sbjct: 91 PMILSELLGNNGVVLDVAAAPGGKTTALSEFSNRNMTIIANEPSSSRLKSLNFNLEKYGA 150 Query: 289 YAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + I D K FD +L+DAPCS+ I ++ D + K Q++ Sbjct: 151 WNVNTISFDGRVLHKKLPQIFDGILLDAPCSNENKIGYSEEINKNWSIDLLNKMKKLQKE 210 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 ++L + +KPGG +++S C+ +++E+ ++++L+ + EL+ +N + Sbjct: 211 IILSVLQLLKPGGFLIYSTCTFSIEENEQNIEEILKEN-SDFELIDINKNRFTKGISGNI 269 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + IR+ P E DGFF L++ + Sbjct: 270 ALDDKIIRVLPHKSEY--------DGFFIAGLKKKGE 298 >gi|307198376|gb|EFN79318.1| Putative methyltransferase NSUN6 [Harpegnathos saltator] Length = 442 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 86/231 (37%), Gaps = 21/231 (9%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 Q+ + + + ++LD+CAAPG KT + + ++ K+ ++ Sbjct: 215 QNLPSIVCSLVLNPQPGETILDMCAAPGNKTTHISYLMRGQGMIIALEKNPGKVARLREK 274 Query: 286 LHLYAEDIIEMD----------------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + I D P+ FD +L+D PCS+ G + P + Sbjct: 275 CNDGNVKIFCCDAANAVVGQEQDSVRATDGPPFPEDHFDRILLDTPCSALG---QRPQLS 331 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + + QR+L + +KP G +V+S C++ ++E +V L+ P +E Sbjct: 332 NAITSVQLRSYVPLQRRLFFAAVRLLKPRGTLVYSTCTVTIAENEGIVAWALKRFP-QLE 390 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + + G + + S + GFF L++ Sbjct: 391 LESIEERIKTDRYGTRGYTVNGLADKDAKKVRRFGPESDSV-GFFIACLKK 440 >gi|320100535|ref|YP_004176127.1| ribosomal RNA methyltransferase NOP2 [Desulfurococcus mucosus DSM 2162] gi|319752887|gb|ADV64645.1| ribosomal RNA methyltransferase NOP2 [Desulfurococcus mucosus DSM 2162] Length = 344 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 121/326 (37%), Gaps = 35/326 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF----------DIETWAHK 192 A + +R + G + + +A P+ + +E+ + Sbjct: 25 ALEYGYLPYMVQRYIDMLGPREAVELLEAFEKPVRQVVRANTLLVEPGELKTRLESLGFR 84 Query: 193 LNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDL 248 L + G + E P S I S + +G ++V + S+ L G VLD Sbjct: 85 LEEIPWAPGSFWVAEAPRSPSIGSTHEYLKGFYYVHRDATSLIPVLLLLGDGYKGDVLDA 144 Query: 249 CAAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 CAAPGGK G V A D RL+ L ++ R+ L + +A + Sbjct: 145 CAAPGGKATFTAQILKERGGGTVYANDYVLYRLKSLIGHVLRMKLDNIVVTWGNAAELPG 204 Query: 304 --KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + F +L+DAPCS G I P D+ + +LL I + G++ Sbjct: 205 RVGRRFKRILLDAPCSGEGRISVDPGRKTRTSILDLAIMVKREVELLGSLIDMLDEEGVI 264 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------EGWIRI 415 +S CS+ +++E VV K+L S P + S + S E IRI Sbjct: 265 AYSTCSIAPEENEYVVAKILESRRDVEVADPGPLPFNHSRWLTSYRSMEYPRELEKCIRI 324 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P G+ GF L+R+ Sbjct: 325 WPH--------RHGLFGFTTCLLKRV 342 >gi|295094814|emb|CBK83905.1| NOL1/NOP2/sun family. [Coprococcus sp. ART55/1] Length = 370 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%) Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAF 299 VLD+CAAPGGK+ + + + + D+S R + L NL+ + ++ + Sbjct: 15 VLDICAAPGGKSTELAAKLNGTGILISNDISNSRAKALLKNLELFGIGNMCVVSEPPNNL 74 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + FD +L+DAPCS G R+ ++ + + A QR +L + +KPGG Sbjct: 75 SKAFEGTFDKILIDAPCSGEGMFRKSSSMMTAWENNGTELFAGLQRGILNEVCKMLKPGG 134 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----GWIRI 415 +++S C+ ++ E V+ +L + + + A + R+ Sbjct: 135 KLLYSTCTFSPEEDERSVEYLLSIDDSMHLVDFPKYEKFDDGNPAWGETGNPELVKCSRL 194 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 P ++ G F + Sbjct: 195 WPHHVKGE--------GHFIALFEK 211 >gi|78355169|ref|YP_386618.1| NOL1/NOP2/sun family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217574|gb|ABB36923.1| NOL1/NOP2/sun family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 429 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 14/253 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + RL + P + S G+ ++QD S+ +P N +VLD+CA+ Sbjct: 32 EFEPEPVSPWTRRLTKEPRPLGSSLAAFFGLIYIQDRSSMLPPLALAPQNGDAVLDMCAS 91 Query: 252 PGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLF 307 PG KT L V + + +RL LR NL L+L P + Sbjct: 92 PGSKTGFLAQLAGPDGFVMGNEPNAQRLATLRQNLFNLNLPHTATCGYAGESLPLPDASW 151 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 + +D PCS GT+ ++P+V+ D + QR LL + + PGG+VV+S C+ Sbjct: 152 QKIQLDPPCSGWGTVDKNPNVMKLWQGDKVKPLVGIQRLLLREAARLLAPGGVVVYSTCT 211 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + Q++EE V+ + + + PL + + EG +R+ D Sbjct: 212 TNVQENEEQVRWATQE--LGLIPEPLAPFEGFVFEDPLLPGCEGTLRV--------DASR 261 Query: 428 SGMDGFFAVALRR 440 S GF+ R+ Sbjct: 262 SSAQGFYIARFRK 274 >gi|218884374|ref|YP_002428756.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus kamchatkensis 1221n] gi|218765990|gb|ACL11389.1| RNA (Cytosine-C(5)-)-methyltransferase [Desulfurococcus kamchatkensis 1221n] Length = 386 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 23/238 (9%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 I L + +G+ + Q + + ++ ++D+ A+PGGKT+ ++ GA++ Sbjct: 159 RISELDIYKQGLLYPQGYPSIVTTRVLDPRPGELIVDMNASPGGKTSHIVQLTKGGARII 218 Query: 268 ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTGTI 322 A+D S ++ +L+ NL L L I D+ D VL+D PCS+ G Sbjct: 219 AIDRSPGKIAELKNNLSNLDLDLNVIAIPHDSRYLHYDFSLLGKVDKVLIDPPCSNLGV- 277 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 P +L R D+ + +QR+ L VKPGG +V+S C+L +++EE + + Sbjct: 278 --RPRLLENRSYKDVENLSSYQRQFLKTAALIVKPGGYIVYSTCTLTLEENEENILYAVE 335 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +P N Y + +G I + ++ M G F L+R Sbjct: 336 ELGLECVELPENPPYTDKT------TYKGMI------GYRYTPLNMDMPGHFIAVLKR 381 >gi|116196510|ref|XP_001224067.1| hypothetical protein CHGG_04853 [Chaetomium globosum CBS 148.51] gi|88180766|gb|EAQ88234.1| hypothetical protein CHGG_04853 [Chaetomium globosum CBS 148.51] Length = 889 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 82/242 (33%), Gaps = 61/242 (25%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVL 311 + A D +R L L RL + DA Y FD +L Sbjct: 242 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPSLRIPNPENPSKPNYLKFDRIL 301 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R++ ++ + + Q ++L++ + +KPGG VV+S CS++ Sbjct: 302 ADVPCSGDGTLRKNVNLWKDWTPGNALGLHLTQVRILVRALQMLKPGGRVVYSTCSMNPV 361 Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT---------- 416 ++E VV + P +E++ + + + + R+ Sbjct: 362 ENESVVAAAIERCGGPDKIEILDCSDQLPLLKRKPGLRKWQIMDKSARLWNSWEEVEEYV 421 Query: 417 --------PDML---------------------EKIDGVSSGMDGFFAVALRR----LIQ 443 P L ++ GFF AL++ + Sbjct: 422 KSTEDGIIPGRLVESMFPPSASSDCADLPLERCMRVYAHQQDTGGFFITALQKKEEFKAK 481 Query: 444 PK 445 P+ Sbjct: 482 PE 483 >gi|308159208|gb|EFO61751.1| Sun/nucleolar protein family protein [Giardia lamblia P15] Length = 742 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 67/344 (19%), Positives = 115/344 (33%), Gaps = 33/344 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII--PEWFKERL 156 D +V +KR + S + R + + P R+ Sbjct: 20 PDEKIVIEEPG-SKRCGRDCTPVNPKASRITNYYRRILSATDMELYLEYFVRPLPTTFRV 78 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKF------DIETWAHKLNAVMLPTGGIRLKELPE 210 + + + L+ + D + L + GG Sbjct: 79 SAAHKPQTFQSRYSNQFGVLFHRFATEEQEASGLDSKQRELTLQKLPWIPGGWMFTADKR 138 Query: 211 SIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ- 258 I + Q+A + IP +V D+CAAPG KT Q Sbjct: 139 VIRLSERYRRLHSFINLQHEAGFIVRQEAVSMIPPIFLQARAGEAVFDVCAAPGSKTLQL 198 Query: 259 --LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVD 313 + + A D +R L N + + + I DA Y LFD +L D Sbjct: 199 LEDVGPTGLLMANDADLKRCYVLVHNTITVAMPSLVITNCDASRYPSLPGGMLFDKILAD 258 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS GT+R+ PD+ + Q ++LL+ + +K GG +V+S CSL+ ++ Sbjct: 259 VPCSGDGTLRKAPDIWPRWSPHGGLSLHPLQLRILLRSLQLLKVGGTIVYSTCSLNPIEN 318 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 E VV L+ +E++ ++ + + P Sbjct: 319 EAVVASALQICQGSLEVLDVSHIAPSLLRSP-------GLTTWP 355 >gi|115492151|ref|XP_001210703.1| hypothetical protein ATEG_00617 [Aspergillus terreus NIH2624] gi|114197563|gb|EAU39263.1| hypothetical protein ATEG_00617 [Aspergillus terreus NIH2624] Length = 883 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 117/396 (29%), Gaps = 115/396 (29%) Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 ERL+++Y E + + D W+ ++ + Sbjct: 77 ERLKDYYVPEITSIQYEGNFVEPPRPVPWYPDQLAWSMTTPKQVVRRFAPFASFQKFLVA 136 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------- 264 G Q+ + IP L ++VLD+CAAPG K+AQL+ Sbjct: 137 ETE---VGNISRQEVVSMIPPLLMDLKPGMTVLDMCAAPGSKSAQLMEMIHAGEEEAMLE 193 Query: 265 ----------------------------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + A D +R L + RL+ + Sbjct: 194 VSKQVKAGTAGPEPLGPEGLNDDGRTTGLLIANDADYKRAHMLIHQMKRLNSPNLIVTNH 253 Query: 297 DAFDYCPKK--------------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 DA Y K FD +L D PC+ GT R++ V + + Sbjct: 254 DATLYPSIKLPQRPEDKGIQRYLKFDRILADVPCTGDGTARKNWGVWREWGPANALGLHP 313 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE------------- 389 Q ++L++ + +K GG VV+S CS++ ++E V+ + + Sbjct: 314 TQVRILVRALQMLKVGGRVVYSTCSMNPLENEAVIASAIERCGGGAKVRIVDCSNELPGL 373 Query: 390 ------------------------------------LVPLNSAYWKSIDMAMALSPEGWI 413 L + + L E + Sbjct: 374 KRAPGLRSWKVMDRENRMWNSWKEIEEQREREGISGLGRIAEGMFPPTGENADLPLERCM 433 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRRL----IQPK 445 R+ P M + GFF L +L +P+ Sbjct: 434 RVYPHMQD--------TGGFFITVLEKLSEIRAKPE 461 >gi|290982781|ref|XP_002674108.1| predicted protein [Naegleria gruberi] gi|284087696|gb|EFC41364.1| predicted protein [Naegleria gruberi] Length = 692 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 91/263 (34%), Gaps = 53/263 (20%) Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQ------------LIVSGAKVTALDVSK------ 273 P+ + VLD+CAAPG KT+Q V A D Sbjct: 181 PPLMFTNWKPSDKVLDMCAAPGSKTSQLVELLYQSSGGDSKNISGFVIANDNDVKRAYLL 240 Query: 274 -RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 +L++L L + D + F PK FD VL D CS GTIR+ P V Sbjct: 241 VHQLQRLNFLFPHLMITNHDATKYPQFTTEPKLKFDKVLCDIMCSGDGTIRKSPQVWRQW 300 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + Q +L+ + GG +V+S C+L+ + E VV +++R + + L Sbjct: 301 KANMGHGLHKLQVDCVLRAFDMLNVGGEIVYSTCTLNPIEDEAVVAEIIRRTKGKLVLQD 360 Query: 393 LNSAYW----KSIDMAMALSPEGWIRITP-----------------------------DM 419 L+S Y K ++ + + P Sbjct: 361 LSSRYPSLKYKPGMTNWVVTSKKG-ELLPSFEYARKYNSDNRITESEFAKDDVKDMNMHY 419 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 +I + GF+ +++ Sbjct: 420 TMRILPNQNNTGGFYIAHFKKVA 442 >gi|188995392|ref|YP_001929644.1| hypothetical protein PGN_1528 [Porphyromonas gingivalis ATCC 33277] gi|188595072|dbj|BAG34047.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC 33277] Length = 468 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 22/288 (7%) Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPE-----SIVSLPGF 218 A A SP + + + + + S + P F Sbjct: 19 ETEAFFAALDSPAPVSIRRNPNKPGIGTTVMDLPTNKSVPWCPLGTYLAERPSFTNDPVF 78 Query: 219 AEGVWWVQDASASIPVQLFGT--LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSK 273 G ++VQ+AS+ QL + + LDLCA+PGGK ++ G+ + + +V Sbjct: 79 HAGGYYVQEASSMFLWQLKPLLGESPVRALDLCASPGGKSTLLTNILPEGSVLVSNEVIH 138 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R L N+ + + E D + FD +LVDAPCS G R+ Sbjct: 139 HRANILAENMIKWGYPTGIVTEADPDRLKSAGETFDFILVDAPCSGEGMFRKDEATRSEW 198 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 ++ A Q+++L ++PGG++ +S C+ + ++E+ + ++ + + Sbjct: 199 SLQNVELCARRQQRILSAAWEMLQPGGLLAYSTCTFNTLENEDNLVFLIDTFGAEPVALD 258 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + + + R P + GFF +R+ Sbjct: 259 VLTEWQIAPQLK---GEAPAYRFFPHKVAGE--------GFFFCLVRK 295 >gi|224013848|ref|XP_002296588.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968940|gb|EED87284.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 531 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 64/392 (16%), Positives = 113/392 (28%), Gaps = 68/392 (17%) Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF--YGKERVLAISDACIS 174 + I + R I S +PE I + S Sbjct: 48 DGSTHHHDECISHQRLRISSLFETYIRTQSWLPERDIYSFFAALRRPLPVCFRIRSSRAS 107 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL---PGFAEGVWWVQDASAS 231 + + F + H++ A + +G Q+ + Sbjct: 108 DEWDTICKIFHLHDAVHRVPADANAYQMPSYFLENYPRLRHWLSTSTLKGDISRQEYVSM 167 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLI----------------VSGAKVTALDVSKRR 275 IPV L + LDLCA+PG KT Q + V A ++ +R Sbjct: 168 IPVHLLNIQSQHKTLDLCASPGSKTIQAMDALYASCDDKTTSSSTPPTGFVMANELDAKR 227 Query: 276 LEKLRCNLD-----RLHLYAEDIIEM----------DAFDYCPKKLFDAVLVDAPCSSTG 320 L R+ A K +D ++ D PCS G Sbjct: 228 AYVLAHRSRDTLQGRMASMAVVTHNACKFPNVLAPCRRTQDPSDKPYDRIICDVPCSGDG 287 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 T+R+ V T ++ Q ++ +GI+ +K GG + +S CS ++E VV + Sbjct: 288 TLRKDFKVWKTWHPSYGIQLHSLQVRIAKRGIALLKIGGYMTYSTCSFHPIENEAVVAAL 347 Query: 381 LRSS-------------------------------PIPVELVPLNSAYWKSIDMAMALSP 409 L + E V +++ + Sbjct: 348 LATRCVELVNAEELVGKSGMQGIRCRGGLDTWKVLNDDCEEVNVDARPKEWPSSLWPPKQ 407 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G + ++ + GFF L+++ Sbjct: 408 VGIAKSL-SKCIRMVPQDNDTGGFFIALLKKV 438 >gi|325912622|ref|ZP_08175005.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 60-B] gi|325478043|gb|EGC81172.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 60-B] Length = 246 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 5/244 (2%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR 204 + IP F ++ + G++ + A + + + + I Sbjct: 1 MYKIPTEFIDKFTHLLGEKHASELMSAYQENPKKGFRLNPLKYDYTNVKYNLDHKIPYID 60 Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 E + + G + QD SA P + VLDLCAAPGGK+ + Sbjct: 61 NGYYGEISGNDSEWIGGYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLK 120 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--MDAFDYCPKKLFDAVLVDAPCSST 319 + + A ++S +R ++LR NL++ I + K FD ++VDAPCS Sbjct: 121 NEGILVANEISSKRAKELRENLEKWGTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGE 180 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 G R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V Sbjct: 181 GMFRKSDDAIRYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSW 240 Query: 380 VLRS 383 +++ Sbjct: 241 LMKE 244 >gi|227827996|ref|YP_002829776.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25] gi|229585265|ref|YP_002843767.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27] gi|238620224|ref|YP_002915050.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4] gi|227459792|gb|ACP38478.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25] gi|228020315|gb|ACP55722.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27] gi|238381294|gb|ACR42382.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4] Length = 339 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269 + L G+ +VQ ++ L N ++D+ A GGK + +V Sbjct: 141 LADLSELKNGLIYVQGKASMYVAHLLDPQPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 200 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326 D +++++EKLR ++++ + +I + D+ D V++D PCS+ G P Sbjct: 201 DHTEKKVEKLRDLVNKMGMR-IEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGI---RP 256 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + DI+ +Q++ L +K G+V++S C++ ++E+V+ Sbjct: 257 KLYDKKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 309 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S E IR P + + GFF L + Sbjct: 310 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 338 >gi|242778522|ref|XP_002479256.1| methyltransferase (Ncl1), putative [Talaromyces stipitatus ATCC 10500] gi|218722875|gb|EED22293.1| methyltransferase (Ncl1), putative [Talaromyces stipitatus ATCC 10500] Length = 909 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 72/243 (29%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------LFDAVLV 312 A D +R L + RL+ + DA Y K FD VL Sbjct: 238 VANDSDFKRAHMLVHQMKRLNSPNLIVTNHDATFYPSIKLPSPTGEKQPNVYLKFDRVLA 297 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT R++P++ + Q ++L++ + +K GG VV+S CS++ + Sbjct: 298 DVPCSGDGTTRKNPNIWSDWSPASALGLHATQMRILVRALQMLKVGGRVVYSTCSMNPIE 357 Query: 373 SEEVVQKVLRSSPIP--VELVPLNSAYWKS------------------------------ 400 +E V+ + VE++ + Sbjct: 358 NESVIAAAIERCGGSSHVEIIDCSKELPDLKRVNGLHTWKVMDRDGRIWNSWEEVEEYRE 417 Query: 401 --------------IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL----I 442 + E +R+ P + + GFF L + Sbjct: 418 TQGITGLGRLAATMFPPTEDVHLERCMRVYPHLQD--------TGGFFITVLEKKKEIRA 469 Query: 443 QPK 445 +P+ Sbjct: 470 KPE 472 >gi|227830733|ref|YP_002832513.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15] gi|229581707|ref|YP_002840106.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51] gi|284998246|ref|YP_003420014.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5] gi|227457181|gb|ACP35868.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15] gi|228012423|gb|ACP48184.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51] gi|284446142|gb|ADB87644.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5] gi|323475086|gb|ADX85692.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A] gi|323477818|gb|ADX83056.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4] Length = 339 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 92/235 (39%), Gaps = 42/235 (17%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269 + L G+ +VQ ++ L N ++D+ A GGK + +V Sbjct: 141 LADLSELKNGLIYVQGKASMYVAHLLDPQPNEKIVDMTAYAGGKLTHIYQLEPRVKLIGF 200 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326 D +++++EKLR ++++ + +I + D+ D V++D PCS+ G P Sbjct: 201 DHTEKKVEKLRDLVNKMGMR-IEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGI---RP 256 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + DI+ +Q++ L +K G+V++S C++ ++E+V+ Sbjct: 257 KLYDKKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 309 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S E IR P + + GFF L + Sbjct: 310 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 338 >gi|312131817|ref|YP_003999157.1| fmu (sun) domain protein [Leadbetterella byssophila DSM 17132] gi|311908363|gb|ADQ18804.1| Fmu (Sun) domain protein [Leadbetterella byssophila DSM 17132] Length = 447 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 119/304 (39%), Gaps = 27/304 (8%) Query: 146 SIIPEWFKERLENFYGKERVLAISDACISPLY-IDLTVKFDIETWAHKLNAVMLPTGGIR 204 +P F ++ G E I L + L + G Sbjct: 1 MKLPIDFVTEMQAQLGSEFPDFEKALQEETPVSIRLNPAKTYDFPFQNLENIPWTPAGRY 60 Query: 205 LKELPESIVSL-PGFAEGVWWVQDASASI----PVQLFGTLNNLSVLDLCAAPGGKTAQL 259 L I +L P F G ++VQ+AS+ I + L VLDLCAAPGGKT L Sbjct: 61 L--KERPIFTLDPAFHAGAYYVQEASSMIVEEIFKKHVPADKPLRVLDLCAAPGGKTTHL 118 Query: 260 IV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAP 315 + A +V K R+ L+ NL + + + D + + FD VLVDAP Sbjct: 119 ASLLGPEDLLVANEVIKSRVSILKENLLKWGYPNVIVSQQDPETFSDLEGFFDVVLVDAP 178 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G R+ P+ +++ + Q+++L V P G++++S C+ +K++++E Sbjct: 179 CSGEGMFRKTPEATEEWSLNNVELCSARQKRILSAAAMLVAPDGLLLYSTCTYNKKENQE 238 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + + + + + + + ++ P L+ GF+ Sbjct: 239 NGLWL-------TRTLDFEAISLEMPEEWGIVKTDFGLQFYPHRLKGE--------GFYI 283 Query: 436 VALR 439 A R Sbjct: 284 SAFR 287 >gi|253745421|gb|EET01363.1| Sun/nucleolar protein family protein [Giardia intestinalis ATCC 50581] Length = 753 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 17/233 (7%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLN 241 L + GG I + Q+A + IP Sbjct: 121 LQKLPWIPGGWMFTADKRIIRLSEKYKRLHSFINLQHEAGFIVRQEAVSMIPPVFLQACT 180 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 +VLD+CAAPG KT Q + + A D +R L N + + + I DA Sbjct: 181 GEAVLDVCAAPGSKTLQLLEDVGPTGLLIANDADLKRCYVLVHNTITVSMPSLVITNCDA 240 Query: 299 FDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 Y LFD VL D PCS GT+R+ PD+ + Q ++LL+ + + Sbjct: 241 SRYPSLLGGILFDKVLADVPCSGDGTLRKAPDIWHRWSPHGGLSLHPLQLRILLRSLQLL 300 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 K GGI+V+S CSL+ ++E VV L+ +E++ + + Sbjct: 301 KVGGIIVYSTCSLNPIENEAVVAAALQICQGSLEVLDASHIAPSLARSPGLAT 353 >gi|229579627|ref|YP_002838026.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14] gi|228010342|gb|ACP46104.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14] Length = 339 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 42/235 (17%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TAL 269 + L G+ +VQ ++ L N ++D+ A GGK + + +V Sbjct: 141 LADLSELKNGLIYVQGKASMYVAHLLDPQPNEKIVDMTAYAGGKLSHIYQLEPRVKLIGF 200 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHP 326 D +++++EKLR ++++ + +I + D+ D V++D PCS+ G P Sbjct: 201 DHTEKKVEKLRDLVNKMGMR-IEIYKADSRYLYEDYNIRDVDKVIIDPPCSALGI---RP 256 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + DI+ +Q++ L +K G+V++S C++ ++E+V+ Sbjct: 257 KLYDKKTEQDILNFHKYQKQFLNSAYKILKKNGVVIYSTCTVTTWENEKVIND------- 309 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 S E IR P + + GFF L + Sbjct: 310 ------------------PRFSVEYEIRFHPHI--------HEITGFFIAKLIKK 338 >gi|301608151|ref|XP_002933655.1| PREDICTED: putative methyltransferase NSUN5-like [Xenopus (Silurana) tropicalis] Length = 492 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 84/456 (18%), Positives = 162/456 (35%), Gaps = 44/456 (9%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 M ++ +L + RK ++ L+ + + + A+V TLR+ ++ Sbjct: 1 MAVYQTAAGILEKLQRKEGAVKTLVYDSGFKNVRQ---------LYALVCETLRYASVLE 51 Query: 65 AVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 ++ L+ + SL ++L V +L+ AV + + A+L Sbjct: 52 DIITSSQLLRGTKKLPLSLAKVL---VYDLLFGKGLQCGGRWKAVILGHKARLRAELARL 108 Query: 124 VNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVK 183 + + + L A +P + + + + Y L Sbjct: 109 KVKKKVSSNEDLVTSLGGGAVGPALPRYVRVNPIKTCLND----VIAYFKRRGYTYLGKA 164 Query: 184 FDIETWAHKLNAVMLPTGGIRL------KELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 IE A + + G +QD ++ +P L Sbjct: 165 RSIEELAELGQKSGKRFLQDLHVPDLLAFPPGTDLHKDSLYTAGHLILQDKASCLPALLL 224 Query: 238 GTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 V+D CAAPG KT+Q ++ + K+ A D+ +RL + L R + +++ Sbjct: 225 APPVGSCVIDACAAPGNKTSQLAAMLQNKGKLFAFDLDTKRLATMSTLLLRAGVTCQELA 284 Query: 295 EMDAFDYCPKKLFD----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---ACFQRKL 347 D P+ +LVD CS +G + + ++ + + FQR+ Sbjct: 285 NQDFLTVSPEDPKYQKVSHILVDPSCSGSGIPDQMRILADKEESAQSERLEALSGFQRRA 344 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 L +SF VV+S CS+ +Q++EEVV+ +L P + L S W + + Sbjct: 345 LSHALSFPSVQ-RVVYSTCSIHQQENEEVVRDILEQHPHFSLIDALPS--WPMHGLNIFP 401 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +R + +GFF +R + Sbjct: 402 GSSCCLR--------ATLSDTLTNGFFVAVFQRQKK 429 >gi|159480252|ref|XP_001698198.1| hypothetical protein CHLREDRAFT_41764 [Chlamydomonas reinhardtii] gi|158273696|gb|EDO99483.1| predicted protein [Chlamydomonas reinhardtii] Length = 221 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 21/230 (9%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 +Q ++ +P +V+D CAAPG KT ++ + +V A D +RL +L Sbjct: 1 VVLQSKASCMPAHALSPAPGWTVVDCCAAPGNKTTHLAAIMRNKGRVIAFDKDPKRLARL 60 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVLWTRD-- 333 + N +R D P VL+D CS +GT D + Sbjct: 61 KANAERTGASCVQARLQDFLSIDPTDPEFGQVRGVLLDPSCSGSGTTFTRLDHFGSLKGS 120 Query: 334 ---TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + + A FQ L + F +V+S CS+ ++E VV L + Sbjct: 121 RVEAARVAQLARFQATALSHALRFPALE-RLVYSTCSVHVAENEAVVAGALAQAAEAGLE 179 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + W + + E +R D G DGFF +R Sbjct: 180 LADPFPAWHRRGLPLFPGAEKLVRT--------DAYLDGTDGFFVAVFQR 221 >gi|222622433|gb|EEE56565.1| hypothetical protein OsJ_05902 [Oryza sativa Japonica Group] Length = 505 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 151/447 (33%), Gaps = 59/447 (13%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF--VL 71 +L V+R S S S R++ A+V TL++LP + VL VL Sbjct: 48 VLRRVLRGDASRRAA---GSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVL 104 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 S +++ + V+ IL+ + + +D K+ R Sbjct: 105 TSKWKKQEELVF----VTAYDILFGQETAASGSVEQLIMLHKDTIMAALEKMCIRRKVRS 160 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 + + + + R E + I L DL V Sbjct: 161 VEDLVSKKRTVKPKPRFLRVNTLRTSTDSVIEELNKIHKVDKDELVPDLLVLP------- 213 Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + +EG ++Q ++ + V+D CAA Sbjct: 214 ----------------PGTDLHNHHLVSEGKVFLQGKASCMVAVALCPEPGWKVIDACAA 257 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF- 307 PG KT L + +TA +++K R + L+ + R + I D D Sbjct: 258 PGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETINGDFLDIDSNDPSY 317 Query: 308 ---DAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIV-------KSACFQRKLLLQGISF 354 A+L+D CS +G D L +R D K + FQRK L +SF Sbjct: 318 AEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLSAFQRKALSHALSF 377 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 VV+S CS+ + ++E+VV VL + + W+ + + E +R Sbjct: 378 PSVE-RVVYSTCSIHQAENEDVVSSVLPLASSLGFELATPFPQWRRRGLPVFEGSEHLLR 436 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 P G++GFF R Sbjct: 437 TDP---------EDGLEGFFISLFVRK 454 >gi|295443046|ref|NP_594509.2| rRNA methyltransferase (predicted) [Schizosaccharomyces pombe 972h-] gi|259016427|sp|O14039|YEY6_SCHPO RecName: Full=Putative methyltransferase C2C4.06c gi|254745554|emb|CAB16366.2| rRNA methyltransferase (predicted) [Schizosaccharomyces pombe] Length = 455 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 89/450 (19%), Positives = 161/450 (35%), Gaps = 64/450 (14%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF- 69 ++++LS + +K+ S+ L D A+V TL++ P +D ++ Sbjct: 7 AANILSDLSKKKGSIKQLAFNSKKH---------DPKRTYALVCETLKYKPVLDEIIARS 57 Query: 70 --VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 +L +L R + LL + ++ + +++ + R A+ V Sbjct: 58 ELLLKENLARV--LVHDLL---------MSKRGLSISNGPIKECILRHKTRLNAEFVKLK 106 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 +++ + EL + +P W + E + + L IE Sbjct: 107 VKKGVKSHEELALKNPVS--LPRWLRINTIKSTKDEVLQGLG----------LDKVSSIE 154 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG--TLNNLSV 245 + + + IV + EG +QD ++ P + T + + Sbjct: 155 ELGPDKFYIDDCVENLIAIDPSFPIVENSLYKEGKVIIQDKASCFPAAVLAGLTGHVGDI 214 Query: 246 LDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 +D CAAPG KT + + A + +R++ LR + I D P Sbjct: 215 IDGCAAPGNKTTHLAACFPKSHIFAFERDAKRVQTLRKMVGISGANNVTIEHQDFTLTDP 274 Query: 304 KKLFDA----VLVDAPCSSTGTIRRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISF 354 K +L+D CS +G + R +L T DT+ + FQ +L + F Sbjct: 275 KSDLYRNVTHILLDPSCSGSGIVSRQDYLLGNEQDVTEDTERLENLCSFQSTILKHALQF 334 Query: 355 VKPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIP-----VELVPLNSAYWKSIDMAMALS 408 P V +S CS+ + ++E+VV +VL P + +P A Sbjct: 335 --PNCRHVTYSTCSVHRLENEQVVCEVLSQEPDWKCNSLTKTLPNWKTRGIPEYCAQPSM 392 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 EG IR P + G GFF L Sbjct: 393 AEGMIRCKPG--------AGGTIGFFVANL 414 >gi|70606823|ref|YP_255692.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639] gi|68567471|gb|AAY80400.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639] Length = 367 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 117/294 (39%), Gaps = 23/294 (7%) Query: 149 PEWFKERLENFYGKERVLAISDACI-SPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 P+W +ERL++ G V + L D+ + R+ + Sbjct: 81 PKWAEERLQSIMGDLNVKTRQQWIRVNTLKADVEDVRRKLERKGVVLQRDSFEFLFRVIK 140 Query: 208 LPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGA 264 I L F G +QD ++ V N +L++ APG K Q+ + + Sbjct: 141 AKSRISDLEEFKNGEIVIQDKASVYSVVFLDPKPNEKILEIGCAPGMKTSLIQQITNNKS 200 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 V +D+S +R++ + +++L + +++ D + P D VL+DAPC+++GT Sbjct: 201 LVIGIDISSKRIKIQQDLMNKLGVENVELVVSDGSNV-PITKADKVLIDAPCTNSGTFVA 259 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P + D+++ + QR +L F P VFS CSL ++ E++ +K Sbjct: 260 DPSIFLRITKKDLMRLSRLQRSILRSIRKFKVPT---VFSTCSLFPEEGEKIAEK----- 311 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L P++ + +R P++ G +GFF Sbjct: 312 -YEAFLTPISIDTTNYGYKRSKVWKR-VVRFYPNI--------HGTEGFFIAKF 355 >gi|194746675|ref|XP_001955802.1| GF18939 [Drosophila ananassae] gi|190628839|gb|EDV44363.1| GF18939 [Drosophila ananassae] Length = 433 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 75/442 (16%), Positives = 149/442 (33%), Gaps = 40/442 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +L + + S+ L+ E VR + + LR A ++ Sbjct: 15 RATAKILKQALENQKSIKSLIFEERH------------ARVRTL-HAVLRHYSDNRAAVE 61 Query: 69 FVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + L Q L +V V ++++ + + K + ++ Sbjct: 62 NAIEETGLLKDNPNLDQYLAKVLVTELIFGR---KQLNGESKPVQKVRSYEEKLQQAISG 118 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 ++ + + E + + ++ + A I + + Sbjct: 119 GGFEKKEPNPRYVRINTNLFSLSEALEYLASEEWRRKELPADVSYADFLAAIKALEEDEF 178 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 T H ++ + + E + +Q+ + + +L +VL Sbjct: 179 MTDLHVEGVLIFHHKWANYWATHDFV------KEKKFILQNKATCLAAELLAPPPGSTVL 232 Query: 247 DLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D+CAAPG KT L + ++ A++ SK R L + I DA Sbjct: 233 DMCAAPGMKTLHLCNVMKNKGRIYAVEQSKERYHSLCSITNDAGCEIVTPILDDALRMND 292 Query: 304 KKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 ++ + +LVD CS G R +D + K A Q K+L + + Sbjct: 293 ERCPEVEYILVDPSCSGNGMQSRINVCDEQKDERRLFKLAGLQVKILSHAMRAFPNVKRI 352 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIRITPD 418 + CSL K+++E+VVQ L+ +P L L + + D +A + + PD Sbjct: 353 AYCTCSLWKEENEKVVQYCLQVNPSFKLLSCKKALRNKWQNVGDTELAKIGKNCLYCLPD 412 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 S DG F + Sbjct: 413 --------SDLTDGIFLALFEK 426 >gi|218887116|ref|YP_002436437.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758070|gb|ACL08969.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 447 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 100/252 (39%), Gaps = 14/252 (5%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + RL E P + G+ ++QD S+ +P +VLD+CA+P Sbjct: 32 FDPEPFSPWCRRLTEEPRPLGGSLTAFFGLIYIQDRSSMLPPLALAPEAGAAVLDMCASP 91 Query: 253 GGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFD 308 G KT L V + + RL LR NL L+L P + Sbjct: 92 GSKTGFLAQLVGPHGLVVGNEPNHTRLATLRQNLFTLNLLNAATCSHPGEALPLPDGSWT 151 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 + +D PCS GT+ R+P VL D + QR LL + + PGG VVFS C+ Sbjct: 152 RIQLDPPCSGWGTVERNPSVLKLWQGDKVKPLIGIQRLLLAEAARLLAPGGRVVFSTCTT 211 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 + ++E V + +ELVPL EG +R+ P S Sbjct: 212 NMHENEAQVLY--ARDELGLELVPLAPPPGFVFAEPELPGCEGTLRVDP--------ERS 261 Query: 429 GMDGFFAVALRR 440 G GFF LR+ Sbjct: 262 GAQGFFIACLRK 273 >gi|145531751|ref|XP_001451642.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419297|emb|CAK84245.1| unnamed protein product [Paramecium tetraurelia] Length = 764 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 116/332 (34%), Gaps = 48/332 (14%) Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN----FYGKERVLAISD 170 N++ +K N+ ++V + + + R G E Sbjct: 4 HRNKNQSKYENAPQKKVKTNHWDQDNQQICVVQFENPIFRRFYEIQLPEIGAEEFKVFWQ 63 Query: 171 ACISPLYIDLTVKFDI---ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW--- 224 + PL + + E+ +L L + +E+ E I + + + W Sbjct: 64 SLSLPLPVTFRINPSQYKYESLIERLQDGSLIKDMVNEEEIVEPIREIKWYPNHLVWESK 123 Query: 225 -----------------------------VQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 Q+ + +P L VLD+CAAPG K Sbjct: 124 VPKKSLRKSAALTKLHQFIQKCNSTGLLTRQELVSMLPPLLLDPQPTDFVLDMCAAPGSK 183 Query: 256 TAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLF 307 T Q IV+ + A DV +R L L R+ I A Y + F Sbjct: 184 TCQLLEIVTKGLIVANDVDPKRAYMLSHQLSRMPTAQVMITNYAAQFYPTLYINGQRLQF 243 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL D PC+ G R+ P D Q +L++ + K GG V++S CS Sbjct: 244 DKVLCDVPCTGDGAARKLPTRWVKWSARDGNVIHPLQLSILMRALQLCKIGGYVMYSTCS 303 Query: 368 LDKQDSEEVVQKVLRSSP-IPVELVPLNSAYW 398 L+ ++E VV +V R + ELV L++ Sbjct: 304 LNPIENEAVVAEVFRRAGFEAFELVDLHTLEG 335 >gi|242060966|ref|XP_002451772.1| hypothetical protein SORBIDRAFT_04g007580 [Sorghum bicolor] gi|241931603|gb|EES04748.1| hypothetical protein SORBIDRAFT_04g007580 [Sorghum bicolor] Length = 493 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 28/275 (10%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW-VQDASASIPVQLFGTLNNL 243 E+ +LN + + + ++ + + ++ + Sbjct: 186 TTESVIEELNKIHMVDKDDMIPDMLVLPPGTDLHNHPLVTDGKGRASCMVAVALSPKPGW 245 Query: 244 SVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA-- 298 V+D CAAPG KT L + + A +++K R + L+ + R I+ D Sbjct: 246 KVIDACAAPGNKTVHLAALMNGKGSIIACELNKERAKTLQHTVRRSGANNIQIVNGDFLE 305 Query: 299 --FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIV-------KSACFQRK 346 + A+L+D CS +G D L +RD D K + FQ+K Sbjct: 306 VDRNDPSYAEVRAILLDPSCSGSGISTERLDYLLPSHSRDNQDDASTSSRVMKLSAFQKK 365 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 L +SF VV+S CS+ + ++E+VV VL + + W + + Sbjct: 366 ALSHALSFPSVE-RVVYSTCSIHQAENEDVVNSVLPLATSLGFELATPFPQWHRRGLPVF 424 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +R P G++GFF R Sbjct: 425 QGSEHLLRTDP---------EDGLEGFFIALFVRK 450 >gi|237841851|ref|XP_002370223.1| hypothetical protein TGME49_094440 [Toxoplasma gondii ME49] gi|211967887|gb|EEB03083.1| hypothetical protein TGME49_094440 [Toxoplasma gondii ME49] gi|221482690|gb|EEE21028.1| conserved hypothetical protein [Toxoplasma gondii GT1] gi|221503116|gb|EEE28822.1| ribosomal RNA small subunit methyltransferase B, putative [Toxoplasma gondii VEG] Length = 967 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 63/420 (15%), Positives = 119/420 (28%), Gaps = 105/420 (25%) Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID--------- 179 +++ + + + +P ++ + + + +A ++ Sbjct: 115 QKICPPQEWNMFMACIKTSLPADAVNLVKLLSFGDELQRLYEASVTHWDACRMLSSSASL 174 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDA 228 + +E L + G + F Q+A Sbjct: 175 VRFSQGLEESLQPLTWMPHEVGWQWNTVCKVRLRRDDSFKRIRRHLMNEDYRGGLTRQEA 234 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------------- 266 + +PV +LD+CA+PG KT Q++ Sbjct: 235 VSMLPVLFLDVRPEHRILDMCASPGSKTTQILDMLQWHAVNSLQDGANSQALPGLGPPTG 294 Query: 267 --TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----------FDAVLVDA 314 A DV +R + L ++ A I DA + FD +L D Sbjct: 295 FVIANDVDAQRTQTLAHQCMKVASPAIAISCSDASLFPLTLPDGPTGETRLQFDRILADV 354 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS GT+R++ D+ + Q +L +G+ ++ GG +V+S CSL + E Sbjct: 355 PCSGDGTMRKNGDLWRKWSAGGSLSLHSIQLGILHRGLQLLRVGGRLVYSTCSLSPLEDE 414 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR-------------------- 414 V+ VL +ELVP K + R Sbjct: 415 AVIAAVLLQYGDAIELVPPPPLPVKQRGREEEKGNDKTERSGGQEAEAQETAPVNGETGS 474 Query: 415 -------------------------------ITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + D ++ + GFF ++ + Sbjct: 475 AQKFFTSFAEVPEPLRGKVKPTMFPPPSGAALHLDRAVRVLPHQNNSGGFFVACFQKKGE 534 >gi|332072565|gb|EGI83048.1| nusB family protein [Streptococcus pneumoniae GA17570] Length = 153 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L V + L+ S LS D+ LV +V T+ Sbjct: 1 MTKVETARSLALAVLEDVFVNQAYSNIALNKHLKGSQ---LSAADKGLVTELVYGTVARK 57 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ++ L + + L LL +S Q+ YLD + D+AVV+ AVE AK + Sbjct: 58 LTLEWYLSHFIE-DRDQLDSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK--LRKKG 114 Query: 120 FAKLVNSILRRVSREKIE 137 KLVN++LRR+ RE Sbjct: 115 SEKLVNAVLRRILREGWP 132 >gi|70607231|ref|YP_256101.1| SUN family protein [Sulfolobus acidocaldarius DSM 639] gi|68567879|gb|AAY80808.1| conserved Archaeal SUN family protein [Sulfolobus acidocaldarius DSM 639] Length = 349 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 42/240 (17%) Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SG 263 + L G +Q ++ L ++D+ A PGGK + Sbjct: 145 MYSSYPLSDLDELKTGEILLQGKASMYVAYLIDPKPGEKIIDMTAHPGGKLTHIYQLEPK 204 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTG 320 A++ D +KR+++ LR RL ++ + D+ D VL+D PCS+ G Sbjct: 205 ARILGFDHTKRKVQDLRQLTQRLGMH-IETYLADSRYLYEDFRISDVDKVLIDPPCSALG 263 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 P + ++ +D++ + +Q++ + +K GI+++S C++ + ++E +V+ Sbjct: 264 L---RPKIYDKKNKEDLINLSSYQKQFINAAYKLLKKDGILIYSTCTMTEIENERIVED- 319 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EL + IR P + + GFF LR+ Sbjct: 320 -----ERFELEEI-------------------IRFYP--------MVHDITGFFIAKLRK 347 >gi|71660683|ref|XP_822057.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70887450|gb|EAO00206.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 608 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 96/269 (35%), Gaps = 50/269 (18%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKR 274 G Q+ + +P L VLD+CAAPG KT+Q+ + V A D++ Sbjct: 131 GYLTRQETVSMLPPVLLQVRPGHRVLDMCAAPGSKTSQILEALIPSMEDGVVVANDINTS 190 Query: 275 RLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 RL+ L +R HL + FD VL D CS GT+R+ D+ Sbjct: 191 RLDVLLHQTNRSAAAHSHLIVTSYDATQFPLLPSESKFDRVLCDVMCSGDGTLRKSMDMW 250 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + + Q ++LL+G+ K GGIVV+S CSL+ + E VV + L + Sbjct: 251 PRWNVFQGAELHNTQIRVLLRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLLQAKGAFR 310 Query: 390 LVPLNSAYW-----KSIDMAMALSPEGWIRIT------------------------P--- 417 L+ S +D L+ + R+ P Sbjct: 311 LMDPTSLVPGLVAAPGLDDWSLLTKDLKARLHTLQEAQVFAETSASNGISYRATMFPNKA 370 Query: 418 -------DMLEKIDGVSSGMDGFFAVALR 439 ++ GFF + Sbjct: 371 RLQEQNIHYTRRVLPHFQDTGGFFVAVME 399 >gi|281209306|gb|EFA83479.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500] Length = 435 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 22/239 (9%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDV 271 L + ++Q + + V + VLD+C+APGGKT L+ + A+D Sbjct: 205 LNALFPDLLFLQHLPSILAVFQLDVKSGQRVLDMCSAPGGKTTLIASLMSDTGTIIAIDK 264 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMD---------AFDYCPKKLFDAVLVDAPCSSTGTI 322 +K++ + ++ L + + + D + FD +L+D PCS G+ Sbjct: 265 NKKKQQTVQKLCLELGIKSVTCLSRDSAKLTKQPRDLPEFADESFDRILLDGPCSGLGSR 324 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R + D+ + QR+L+ + +K GGI+V+S C+++ +++E+ V +L Sbjct: 325 PRFIEPSKLI---DLTNATDIQRRLIDNAVPLLKRGGILVYSTCTINPEENEQNVAYLLA 381 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG-VSSGMDGFFAVALRR 440 + L+ L+PE ++++ D GFF + Sbjct: 382 KHSN-MRLIAQFPHVGDRGLQKCGLTPEQQ-----HLVQRFDPSNKLSSIGFFIARFIK 434 >gi|195037114|ref|XP_001990010.1| GH18476 [Drosophila grimshawi] gi|193894206|gb|EDV93072.1| GH18476 [Drosophila grimshawi] Length = 433 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 79/455 (17%), Positives = 150/455 (32%), Gaps = 58/455 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF----LPRID 64 ++ +L + K+ S+ L+ E VR++ L+ +D Sbjct: 15 KATAKILKAAIEKQKSIKSLIFEEKH------------ARVRSL-QAVLKHYSDNRGAVD 61 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYL------DVADYAVVDLAVEQAKRDKENR 118 ++ L L +V V ++++ D V E+ ++ Sbjct: 62 NAIEE--TGLLKDNPNLDSALAKVLVTELIFGRGQLNGDSKPVQTVRTYKERLQQAIGGS 119 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 K + + ++ EW +++L L A ++ Sbjct: 120 DIQKKEPNPRYVRINTNLLSIEDALDYLYGEEWRRKQLPADATYPDFLNAIRALEEDEFL 179 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + V++ S + +Q+ + + ++ Sbjct: 180 MDMH----------VEGVLIFHHKWSHYW-----ASHDFVHSKKFILQNKATCLAAEMLA 224 Query: 239 TLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 +VLD+CAAPG KT + + ++ A++ SK R L + I Sbjct: 225 PPAGATVLDMCAAPGMKTLHMCNVMQNKGRIYAVEQSKERYMALCNITNEAGCQIVTPIL 284 Query: 296 MDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 DA +K D +LVD CS G R +D + K A Q K+L +S Sbjct: 285 GDALTMNAEKCPDVEYILVDPSCSGNGMQSRISVCDEQKDDKRLYKLAGLQIKILSHAMS 344 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPE 410 +V+ CSL K+++E+VVQ+ L+ +P L L + + D + Sbjct: 345 AFPDVKRIVYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWQNVGDKEYVQIGK 404 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 + PD DG F + +P+ Sbjct: 405 NVLYCLPD--------EDLTDGIFLALFEK--RPE 429 >gi|118346491|ref|XP_976855.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila] gi|89288491|gb|EAR86479.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila SB210] Length = 635 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 104/263 (39%), Gaps = 51/263 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----KVTALDVSKRR 275 G Q+ + IP L N +LD+CAAPG KT Q++ S + A D+SK+R Sbjct: 130 GKISRQELVSMIPAALIDAQPNEKILDMCAAPGSKTKQMLESMMKGNESLLFANDISKKR 189 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L ++ +L+ + D Y + FD VL D PCS GTIR+ +L + Sbjct: 190 AFMLAFHVLKLNATCAVLTSNDCTKYPKVEQFDKVLCDVPCSGDGTIRKQKLILKRWSSK 249 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 C Q LLL+ + VK GG VV+S CSL+ ++E VV LR V+++ + Sbjct: 250 LGKNLHCLQLSLLLRALYLVKKGGSVVYSTCSLNPMENESVVSAALRILKPYVKIIDVKD 309 Query: 396 AYWKSIDMA--------------------------------------MALSPEGWIRITP 417 + +G +RITP Sbjct: 310 KFPGFKFSPTLSKWPVVQKKITNAYWSYESIDDVYGLKGKKIFDTMFPQEDVQGCLRITP 369 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 M + GFF L++ Sbjct: 370 HM--------NDTGGFFVAYLQK 384 >gi|224093730|ref|XP_002309966.1| predicted protein [Populus trichocarpa] gi|222852869|gb|EEE90416.1| predicted protein [Populus trichocarpa] Length = 799 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271 Q+A + +P + V D+CAAPG KT QL+ V A D+ Sbjct: 169 ITRQEAVSMVPPLFLDVRPDHFVFDMCAAPGSKTFQLLEIIYQSTKSGSLPDGMVMANDL 228 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------------FDAVL 311 +R L R+ + +A + + FD VL Sbjct: 229 DVQRCNLLIHQTKRMCTANLIVTNNEAQHFPGCRADKNGSKASEMEIEPQISQLLFDRVL 288 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ PD+ + Q ++ ++G+S +K GG +V+S CS++ Sbjct: 289 CDVPCSGDGTLRKAPDMWRKWNPGMGNGLHSLQIQIAMRGLSLLKVGGRMVYSTCSMNPV 348 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + E VV ++LR VELV ++S + + Sbjct: 349 EDEAVVAEILRKCGGSVELVDVSSELPQLVRRP 381 >gi|325186979|emb|CCA21523.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 463 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 34/256 (13%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--VSGAKVTALDVS 272 L G V+++Q +++ + N+ +LD+CAAPGGKT + ++ + A+D S Sbjct: 199 LNGLESKVFYLQQFPSAMVGHVIHPQNDDYILDMCAAPGGKTTHMANLMTKGLIIAVDRS 258 Query: 273 KRRLE----------------------------KLRCNLDRLHLYAEDIIEMDAFDYCPK 304 +R++ K R + +E F Sbjct: 259 RRKVGALKRLLQDLGLGKRVIAIHKDSTQLLRLKSLQMAPRPSIEKLMEMENSHFRGFYP 318 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 + FD +L+D PCS+ G P +L RDT+ + + QR L+ + +K G++VFS Sbjct: 319 ESFDKILLDPPCSALGL---RPRLLHPRDTEALEQFVKIQRNLIWCAVRLLKADGVLVFS 375 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 C+L +++E++V VL + P ++L+ + L +G ++++ D Sbjct: 376 TCTLHPRENEKMVAYVLETYP-FMKLIAPFENDPNLRFGSKGLDGQGLSNEQVGLVQRFD 434 Query: 425 GVSSGMDGFFAVALRR 440 GFF ++ Sbjct: 435 PTIDDTIGFFCAKFQK 450 >gi|302805749|ref|XP_002984625.1| hypothetical protein SELMODRAFT_120643 [Selaginella moellendorffii] gi|300147607|gb|EFJ14270.1| hypothetical protein SELMODRAFT_120643 [Selaginella moellendorffii] Length = 824 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 90/309 (29%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDV 271 Q+A + +P N +LD+CAAPG KT QL+ V A D+ Sbjct: 164 ITRQEAVSMVPPLFLDVKPNHRILDMCAAPGSKTFQLLEVIHKDDQPGALSQGMVIANDL 223 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------------FDAVL 311 + +R L R+ + +A + K FD VL Sbjct: 224 NVQRCHLLIHQTKRMCSPNILVTNHEAQHFPGLKKKKLEGRSFLICVVRDDTGLLFDRVL 283 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ PD+ C Q ++ ++G++ ++ GG +V+S CSL+ Sbjct: 284 CDVPCSGDGTMRKAPDLWKKWSPGMGNGLHCLQIQIAMRGVALLEVGGRMVYSTCSLNPI 343 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALS---PEGWIRITP 417 + E VV ++LR S +EL+ ++S WK S + + + P Sbjct: 344 EDEAVVGEILRQSGGCMELLDVSSELPTLRRRPGLKSWKVRGRRRWFSSYHEDKYRAVLP 403 Query: 418 DMLE---------------------------------------------KIDGVSSGMDG 432 M +I G Sbjct: 404 SMFPSGKRMAQITREREGDMDSGNNVENPSEEATESEAEVSELPLERCMRILPHDQDTGG 463 Query: 433 FFAVALRRL 441 FF A +++ Sbjct: 464 FFIAAFQKV 472 >gi|159113214|ref|XP_001706834.1| Sun/nucleolar protein family protein [Giardia lamblia ATCC 50803] gi|157434934|gb|EDO79160.1| Sun/nucleolar protein family protein [Giardia lamblia ATCC 50803] Length = 742 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 13/206 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G Q+A + IP +VLD+CAAPG KT Q + + A D + Sbjct: 157 HEAGFIVRQEAVSMIPPIFLQAHAGEAVLDVCAAPGSKTLQLLEDVGPTGLLMANDADLK 216 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R L N + + + I DA Y LFD +L D PCS GT+R+ PD+ Sbjct: 217 RCYVLVHNTITVSMPSLVITNCDASRYPSLPGGMLFDKILADVPCSGDGTLRKAPDIWPR 276 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + Q ++LL+ + +K GG +V+S CSL+ ++E VV L+ +E++ Sbjct: 277 WSPHGGLSLHPLQLRILLRSLQLLKVGGTLVYSTCSLNPIENEAVVASALQICQGSLEVL 336 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITP 417 + I + P Sbjct: 337 DASHIAPSLIRSP-------GLTTWP 355 >gi|284040722|ref|YP_003390652.1| Fmu (Sun) domain protein [Spirosoma linguale DSM 74] gi|283820015|gb|ADB41853.1| Fmu (Sun) domain protein [Spirosoma linguale DSM 74] Length = 453 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 18/258 (6%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPV----QLFGTLNNLSVLD 247 L V G L E P S P F G ++VQ+AS+ + Q L VLD Sbjct: 40 DLVPVPWCPDGYYLPERP-SFTLDPLFQAGAYYVQEASSMLLHEALRQTVNLDRPLRVLD 98 Query: 248 LCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP- 303 LCAAPGGK+ + + + +V + R+ LR NLD+ + D D Sbjct: 99 LCAAPGGKSTLLASALHPDSLLVCNEVIRSRVSVLRENLDKWGYPNVVVSNHDPEDMSKL 158 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FD VLVDAPCS G R+ PD + + + Q+++L + GI+++ Sbjct: 159 TGFFDVVLVDAPCSGEGLFRKDPDAMQEWSEASVDLCSARQKRILAAAAPLLDKDGILIY 218 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG-WIRITPDMLEK 422 S C+ + +++ E V+ + L+ + + E + P + Sbjct: 219 STCTYNDRENAENVRYLTEIGFRNKPLILPSEWNIVERQAGDPETGEAVGYQCYPQRVRG 278 Query: 423 IDGVSSGMDGFFAVALRR 440 GFF A ++ Sbjct: 279 E--------GFFISAFKK 288 >gi|296109553|ref|YP_003616502.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus ME] gi|295434367|gb|ADG13538.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus ME] Length = 274 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 34/270 (12%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFG 238 +L + L SI + P + G + Q S+ IP Sbjct: 23 SPSALKERLEKKGVKLEKTFLDYAFRVIESPFSIGATPEYLFGYYMPQSLSSMIPPITLN 82 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 VLD+CAAPGGKT L + + + A+++SK R++ L+ N++R+++ II Sbjct: 83 PSPKDRVLDMCAAPGGKTTHLAQLMGNEGTILAVEISKERVKALKSNINRMNILNTIIIN 142 Query: 296 MDAFDYCPKKL-----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 D Y + FD +L+DAPCS ++ V D DI + Q++LL Sbjct: 143 KDMRKYKEYLMKKKILFDKILLDAPCSGNIIKDKNRKV----DEKDIEYCSLRQKELLNI 198 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 G+ +KPGG +V+S CS++++++EEV++ VL+S ++L+ L+ + + Sbjct: 199 GLDLLKPGGELVYSTCSMEEKENEEVIEHVLKSR-DDIKLIKLSPIANFIRPGKI----K 253 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +++ P FF +++ Sbjct: 254 GTLKVYPPYEP-----------FFIAKIKK 272 >gi|322801564|gb|EFZ22220.1| hypothetical protein SINV_04379 [Solenopsis invicta] Length = 463 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 35/281 (12%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA------EGVWWVQDASASIPVQLFGT 239 + +L + + + I +P F +Q+ + I + Sbjct: 190 LRQTRKELFCKVSRNPCGVAIIMTDVISRIPQFNINDESLRPHALLQNLPSIICSLVLNP 249 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE---- 295 + +VLD+CAAPG KT + + + ++ K+R ++ + I Sbjct: 250 QPDETVLDMCAAPGNKTTHISLLMKGQGTIIALEKNPGKVRRFKEKCNDRNIKIFCYDAT 309 Query: 296 ------------MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 D + FD +L+D PCS+ G + P + T + + Sbjct: 310 KAVIAREHSFVHTDDGPPFEENYFDRILLDTPCSALG---QRPQLYNTITSAQLRSYIPL 366 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP----IPVELVPLNSAYWK 399 QR L + +KPGG +V+S C++ ++E ++ L+ P V+ Y Sbjct: 367 QRSLFSVAVRLLKPGGTLVYSTCTVTIAENEGIIAWALKQFPKLKLESVKDEIKTDKYGI 426 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ E ++ G S GFF L++ Sbjct: 427 QGYVIDGLTNEDAKKV------CRFGPESDFVGFFIACLKK 461 >gi|302793867|ref|XP_002978698.1| hypothetical protein SELMODRAFT_418525 [Selaginella moellendorffii] gi|300153507|gb|EFJ20145.1| hypothetical protein SELMODRAFT_418525 [Selaginella moellendorffii] Length = 787 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 71/423 (16%), Positives = 131/423 (30%), Gaps = 101/423 (23%) Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA--IS 169 K+ + LR+ + I + + + E + + Sbjct: 56 KQGIVPESEWGQFMACLRKSLPTTFRINGGGQYAECIRDQMRRDFFDCLKDETEIDGEVI 115 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + + + + +L + + + + Q+A Sbjct: 116 EPPRPLPWYPNDLAWHLSFSRRQLRKASILQRIHEFLKEENELGN--------ITRQEAV 167 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDVSKRRLEK 278 + +P N +LD+CAAPG KT QL+ V A D++ +R Sbjct: 168 SMVPPLFLDVKPNHRILDMCAAPGSKTFQLLEVIHKDDQPGALSQGMVIANDLNVQRCHL 227 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKL---------------------FDAVLVDAPCS 317 L R+ + +A + K FD VL D PCS Sbjct: 228 LIHQTKRMCSPNILVTNHEAQHFPGLKKKKLEVDVKDKEPSIGDDMGLLFDRVLCDVPCS 287 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 GT+R+ PD+ C Q ++ ++G++ ++ GG +V+S CSL+ + E VV Sbjct: 288 GDGTMRKAPDLWKKWSPGMGNGLHCLQIQIAMRGVALLEVGGRMVYSTCSLNPIEDEAVV 347 Query: 378 QKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALS---PEGWIRITPDMLE-- 421 ++LR S +EL+ ++S WK S + + + P M Sbjct: 348 GEILRQSGGCMELLDVSSELPTLRRRPGLKSWKVRGRRRWFSSYHEDKFRAVLPSMFPSG 407 Query: 422 -------------------------------------------KIDGVSSGMDGFFAVAL 438 +I GFF A Sbjct: 408 KRMAQITLEREGDMDSGNNVENPSEGATESEAEVSEFPLERCMRILPHDQDTGGFFIAAF 467 Query: 439 RRL 441 +++ Sbjct: 468 QKV 470 >gi|290973055|ref|XP_002669265.1| predicted protein [Naegleria gruberi] gi|284082810|gb|EFC36521.1| predicted protein [Naegleria gruberi] Length = 455 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 41/242 (16%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLS--------VLDLCAAPGGKTA----QLI 260 + EG++ +QD S+ + VQ + +LD C GGKT L Sbjct: 241 RQWKEYKEGLFDIQDESSQLIVQELIRNIVMKEIKTLKPLILDYCCGTGGKTFAFAGCLN 300 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSST 319 G S++ +L+ RL + IE D + K + VL D PC+ T Sbjct: 301 GKGQIYMHDVRSEKLFPELKRRAQRLGIENIQPIEHDHSHWDKLKDKMNLVLCDVPCTGT 360 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+RR+ + + + + + QR ++ + I FVK G ++S CS+ K+++E+ ++ Sbjct: 361 GTLRRNVETKYKINYQWLQELTEKQRDIIQKAIPFVKQDGYFLYSTCSILKKENEKQLEW 420 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +L+ +LV ++I P G DG + V L+ Sbjct: 421 ILKKYKN-FQLV-------------------HTVKILP--------TIDGSDGMYGVLLK 452 Query: 440 RL 441 R+ Sbjct: 453 RI 454 >gi|300706747|ref|XP_002995615.1| hypothetical protein NCER_101436 [Nosema ceranae BRL01] gi|239604789|gb|EEQ81944.1| hypothetical protein NCER_101436 [Nosema ceranae BRL01] Length = 579 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 41/256 (16%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRR 275 G Q+ + +PV L G + SVLD+CAAPG KT Q +I V +V +R Sbjct: 82 KAGHIQRQEVVSMLPVLLMGMEPSFSVLDMCAAPGSKTKQLLEIINDKGLVVCNEVKFKR 141 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYC-PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + L ++ ++ DA KK FD VL D PCS GT R++ V+ Sbjct: 142 MRILVSETCKIPRRGFMVLRHDASTLPVFKKDFDRVLCDVPCSGDGTTRKNYGVVPNWCI 201 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 ++ + Q +L I+FVK G++V+S CSL+ ++E ++QK + + +E+V L Sbjct: 202 NNALSLCKLQFSILKNAINFVKDDGLIVYSTCSLNPIENECIIQKAVLE--LDLEIVDLR 259 Query: 395 SAYWKSIDMAMALSPEG---------------------------WIRITPDMLEKIDGVS 427 + + EG IR+ P Sbjct: 260 NNINEKFLSKKFKFREGLTKWNINIKNYNGINFEPVNDNIGLSKCIRVLPHDQ------- 312 Query: 428 SGMDGFFAVALRRLIQ 443 GFF L++ I+ Sbjct: 313 -NTGGFFITGLKKKIK 327 >gi|320590416|gb|EFX02859.1| methyltransferase [Grosmannia clavigera kw1407] Length = 1467 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 80/423 (18%), Positives = 132/423 (31%), Gaps = 98/423 (23%) Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 KEN + N +L +++ A +P K LA+ + Sbjct: 635 KENERLQQYYNGLLELNDKDEEREAFWAAFRRELP----HSFRFCGSKGHALAVQKLLQT 690 Query: 175 PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFAEGV--------- 222 +L + + + I P FA Sbjct: 691 RYIPELAKISHYDGLPVSPPQPVPWYPDSLAWWMTTPKTVIRKFPPFAAFQKFLVSETTV 750 Query: 223 --WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV-------------- 266 Q+ + IP L ++VLDLCAAPG K AQL+ + Sbjct: 751 GNISRQEVVSMIPPLLLDVRPGMAVLDLCAAPGSKAAQLLEMLHQGEEARVRKVLRDDGR 810 Query: 267 -----TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP------------------ 303 A D +R + L L RL + DA Y Sbjct: 811 ATGVLIANDSDYKRSQLLIHQLKRLSSPNIIVTNHDATVYPSLRLPPLATSSESKRPPPV 870 Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD +L D PCS GT+R++ + + Q ++L++ + ++PGG VV Sbjct: 871 RYLKFDRILADVPCSGDGTLRKNVTMWKDWTPAGALGLHLVQVRILVRALQMLRPGGRVV 930 Query: 363 FSNCSLDKQDSEEVVQK---------------------VLRSSPIPVELVPLNS-----A 396 +S CSL+ ++E VV +L+ P ++ + Sbjct: 931 YSTCSLNPVENEAVVATAIDLCGGPDRVAILDSSDKLPLLQRRPGLKRWSIMDRTGRQWS 990 Query: 397 YWKSIDMAMALSPEGWI---RITPDMLE-------------KIDGVSSGMDGFFAVALRR 440 W ++ +A G + R+ P M ++ GFF VAL + Sbjct: 991 SWPEVEAYVASDESGGLAPSRVVPSMFASEASDALPLERCIRVYPHLQDTGGFFIVALEK 1050 Query: 441 LIQ 443 + Sbjct: 1051 KAE 1053 >gi|156083481|ref|XP_001609224.1| proliferating-cell nucleolar protein [Babesia bovis T2Bo] gi|154796475|gb|EDO05656.1| proliferating-cell nucleolar protein, putative [Babesia bovis] Length = 726 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 109/282 (38%), Gaps = 59/282 (20%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTA-------------- 268 Q+ + +PV L + ++LD+CAAPG K Q++ + Sbjct: 167 LSRQETVSMLPVLYLDPLPHENILDICAAPGMKFLQILDAVHSSLHYDCKLSPCSNRGVI 226 Query: 269 --LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAP 315 DV ++RL L N+ ++ + + D + FD VL D P Sbjct: 227 IGNDVCQQRLSTLVHNVKGINCPSAAVTNFDGKSPPSRFPNLYNSNGEQLLFDRVLADVP 286 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS GT+R+ P++ T + Q ++ + + +KPGG +++S CSL+ ++E Sbjct: 287 CSCDGTMRKAPELWKTWKPVGGLHMHRLQLSIVKRAMQLLKPGGTLIYSTCSLNPLENEA 346 Query: 376 VVQKVLRS--SPIPVELVPLNSAYWKSIDMAMA----LSPEGWI-------------RIT 416 + + VELVPL+ D +A +P+G R+ Sbjct: 347 IASYIASEGMFEFGVELVPLDPIPGFRADHGLASWLVPNPDGGYFQSYDTVPESMRHRVM 406 Query: 417 PDMLE-------------KIDGVSSGMDGFFAVALRRLIQPK 445 P M ++ + GFF + R+++ K Sbjct: 407 PSMFPSPQWDSVMSSRVMRVLPHHNDTGGFFLLKARKVVSNK 448 >gi|291548279|emb|CBL21387.1| NOL1/NOP2/sun family [Ruminococcus sp. SR1/5] Length = 389 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 34/222 (15%) Query: 245 VLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDLCAAPGGK L + A D+S R L NL+ + + + Sbjct: 15 VLDLCAAPGGKATALGAALNDTGFLLANDISTSRARALLRNLELFGMKNMLVTDEKPAKL 74 Query: 302 CPKKL--FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 + F+ +L+DAPCS G R+ + + + + Q+ L+L+ ++PGG Sbjct: 75 AQRFPAFFNKILLDAPCSGEGMFRKEEALARDWTPEKSAELSDIQKDLVLKAADMLRPGG 134 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP---------- 409 ++++S C+ + + EEVV +LR P +EL+ + S Sbjct: 135 MLLYSTCTFSQCEDEEVVAYLLRQRP-DMELMEMPGYEGFSSGRPEYAGTADTSDSEITL 193 Query: 410 ----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +RI P ++ G F R+ Sbjct: 194 SLNAFNPEELQKCVRIFPHKMDGE--------GHFLALFRKK 227 >gi|297686139|ref|XP_002820622.1| PREDICTED: putative methyltransferase NSUN6-like [Pongo abelii] Length = 469 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 37/267 (13%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPRYLFLQNLPSALVTHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAP-------- 315 +V ALD ++EK++ N L L + D + + + P Sbjct: 260 GEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFIVVSYIR 319 Query: 316 ---CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 + + P++ T ++ QRKL + +KP G++V+S C++ + Sbjct: 320 HMIEGECAGMGQRPNMACTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAE 379 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD- 431 +EE V L P ++L LS E ++ + + MD Sbjct: 380 NEEQVAWALTKFPC-LQLQRQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDS 438 Query: 432 ------------------GFFAVALRR 440 GFF + Sbjct: 439 LREARREDMLRLANKDSIGFFIAKFVK 465 >gi|302830274|ref|XP_002946703.1| tRNA-methyltransferase [Volvox carteri f. nagariensis] gi|300267747|gb|EFJ51929.1| tRNA-methyltransferase [Volvox carteri f. nagariensis] Length = 404 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 93/301 (30%), Gaps = 84/301 (27%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVT 267 G Q+A + +P + VLD+CAAPG KT Q V Sbjct: 111 DAGSISRQEAVSMVPPLFLDVQPHHRVLDMCAAPGSKTFQLLEAIHANSRPGQTPPGFVV 170 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------------------- 302 A D R L R+ + DA + Sbjct: 171 ANDADFMRCNLLTHQTKRVCSPCLLVTNHDASRFPVFLAGAPTAAAQASAAGGASAPPPR 230 Query: 303 ---PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +L D PCS GT+R+ PD+ + Q ++ + G ++ GG Sbjct: 231 PPRYTVRFDRILADVPCSGDGTLRKSPDIWRKWNVGGGNSLHSVQLRIAMHGAKLLEVGG 290 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK-------------------- 399 +V+S C+ + + E VV ++L +EL+ ++ + Sbjct: 291 RMVYSTCTFNPVEDEAVVSELLLRCGGALELLDVSDCMPQLRRMAGKHTWQVRDRYRFYS 350 Query: 400 -----------------SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 S AL E +R P GFF LR++ Sbjct: 351 SWDEARETGYKLEESMFSNPAKAALPLERCMRFLPHH--------GDTGGFFVAVLRKVS 402 Query: 443 Q 443 + Sbjct: 403 E 403 >gi|164661315|ref|XP_001731780.1| hypothetical protein MGL_1048 [Malassezia globosa CBS 7966] gi|159105681|gb|EDP44566.1| hypothetical protein MGL_1048 [Malassezia globosa CBS 7966] Length = 922 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 103/331 (31%), Gaps = 44/331 (13%) Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY 177 + + R E P R+ + R L + I + Sbjct: 35 EQRSPKFEAYYRGQGIVPDEEWDTFIESMRTPLPTTFRITSGKPTARQLLDAMNKIYLPF 94 Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQ 226 + + + G L + P F Q Sbjct: 95 LSNVQFEGEKVTPPRQLEWYPEGLGWHLDVRKNVLRKSPEFKRFQQFLVHETEVGSISRQ 154 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK----------------VTALD 270 +A + +P VLDLCAAPG KTAQLI + V A D Sbjct: 155 EAVSMLPPLFLDVRPEHLVLDLCAAPGSKTAQLIEAIHSPLTSSPDAFDPMPLGVVVAND 214 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMD-----------------AFDYCPKKLFDAVLVD 313 +R L RL + + +D + +D VL D Sbjct: 215 SDTKRAHMLVHQAQRLPSPSLCVTNVDASNMANIQVAWKGEQPSDPICQRELKYDRVLAD 274 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS T+R++ + + Q ++L++G+ ++PGG +V+S CSL+ ++ Sbjct: 275 VPCSGDATLRKNLSIWKDWTPMNGTGLHALQLRILIRGLMLLRPGGRLVYSTCSLNPIEN 334 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 E VV LR V + +S Sbjct: 335 EAVVAAALRHFQGDVTVFDASSMLPALKRRP 365 Score = 40.3 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 9/60 (15%) Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ-PK 445 +L L E IR+ P M GFF L + + P+ Sbjct: 442 DADLASRTPKSLWPQGDEETLHLERCIRVYPHMQ--------NTGGFFVCVLEKKPKTPE 493 >gi|150399201|ref|YP_001322968.1| NOL1/NOP2/sun family RNA methylase [Methanococcus vannielii SB] gi|150011904|gb|ABR54356.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus vannielii SB] Length = 265 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 26/268 (9%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPE------SIVSLPGFAEGVWWVQDASASIPVQLFG 238 E +L + L + S+ + P + G++++Q S+ IP + Sbjct: 15 SPEELKKRLEEKNVVLEDTFLNYVFRVKISPFSMGATPEYLSGLYFLQSISSIIPSIVLN 74 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 + VLD+C+APGGKT L + + + A++++K RL+ LR N++R+ + ++ Sbjct: 75 PTKDDKVLDMCSAPGGKTTHLSQLMENEGCIVAVEINKNRLKSLRSNINRMGIKNIIMLN 134 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 +A + FD +L+DAPC+ + DI+ A Q +L I + Sbjct: 135 TNAINLNKNLKFDKILLDAPCTGNEIKDSDRV----KTKRDILFCAKRQVELFRTAIEVL 190 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 GG +V+S CS + ++ EE++ +L++ +EL+ LN + I++ G +++ Sbjct: 191 SEGGQLVYSTCSPEIEEDEEIISYILKTYKN-MELIELNKEDFPGINVIDGEIK-GTLKV 248 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 P FF L+++ + Sbjct: 249 IPPNEP-----------FFIAKLKKITK 265 >gi|260798006|ref|XP_002593991.1| hypothetical protein BRAFLDRAFT_118815 [Branchiostoma floridae] gi|229279224|gb|EEN50002.1| hypothetical protein BRAFLDRAFT_118815 [Branchiostoma floridae] Length = 933 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 48/236 (20%) Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 +++ + + ++ R + + Sbjct: 322 RWCTTYKEKKSMMGPHVMTPLPNHHFLLCFAQGARIEFAPVRSGSDSVF-RCWKIIKWWS 380 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + P GT+R++PDV Q +++ +GI ++ GG +V+ Sbjct: 381 YEKNHFRRTMPPIGGDGTMRKNPDVWKKWSPGQGQNLHNLQLRIVRRGIELLRVGGQLVY 440 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY-----------WKSIDMAMALSP--- 409 S CSL+ + E V+ +L VELV ++ WKS D ++S Sbjct: 441 STCSLNPLEDEAVIAALLTECEDSVELVDVSDKLAGLKRLSGVSAWKSGDFYSSISEVPT 500 Query: 410 -------------------------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 IRI P + GFF LR+ Sbjct: 501 DRHSNLRRASMFPPPDPDKLQAMQLNRCIRILPHHQD--------TGGFFVAVLRK 548 >gi|300699440|ref|XP_002994849.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01] gi|239601481|gb|EEQ81178.1| hypothetical protein NCER_102567 [Nosema ceranae BRL01] Length = 185 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 4/183 (2%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + + + + P + G +Q AS+ + V NL ++D+CAA Sbjct: 2 DMENIEWCDDALVIFNSSVPVGATPEYLAGYLIIQGASSMLSVLNLDVKENLKIIDMCAA 61 Query: 252 PGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD 308 PGGK+ + + + + + D+S R++ LR NL R+ + + +DA + D Sbjct: 62 PGGKSQYISALMNNTGVLYSNDISDDRIKALRSNLLRMGVTNAIVTNLDARKLNFGLV-D 120 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VL+DAPCS TG I + P + +R DDI K+ Q++L+L+G +K GG++V+S CS+ Sbjct: 121 RVLLDAPCSGTGVISKDPSIKMSRTVDDIRKTVFRQKELILKGFDMLKKGGVMVYSTCSV 180 Query: 369 DKQ 371 + Sbjct: 181 LTE 183 >gi|255941612|ref|XP_002561575.1| Pc16g12760 [Penicillium chrysogenum Wisconsin 54-1255] gi|211586198|emb|CAP93946.1| Pc16g12760 [Penicillium chrysogenum Wisconsin 54-1255] Length = 776 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 70/449 (15%), Positives = 129/449 (28%), Gaps = 102/449 (22%) Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKER 155 + + + E + + R+ + R G ++R Sbjct: 22 TRAQWQDITRENEKFERYYNEPEFLPEEEKELFWATMRKDLPNSFRFTGSRGHALAVQQR 81 Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215 L + + E + ++ D W+ ++ + Sbjct: 82 LIDHHIPEITSIKYEDEFVEPPRPVSWYPDQLAWSMTTPKNVIRRFAPFASFQKFLVAET 141 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI--------------- 260 G Q+ + IP L ++VLD+CAAPG K+AQL+ Sbjct: 142 ---DVGNISRQEVVSMIPPLLIDAKPGMTVLDMCAAPGSKSAQLMELLHAGEEDAIAQVT 198 Query: 261 ----------------------VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 S + A D +R L + RL + DA Sbjct: 199 EQIKSGTAGPEPLGPEGLNDDGRSTGLLIANDSDYKRAHMLIHQMKRLSSPNLIVTNHDA 258 Query: 299 FDYCPKK-----------------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSA 341 + K FD +L D PCS GT R++ V + + Sbjct: 259 TMFPSIKLPPLPTADGSKPKNRYLKFDRILADVPCSGDGTTRKNVGVWKDWTPGNALGLY 318 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN------- 394 Q ++L++ + +K GG VV+S CSL+ ++E VV + + ++ Sbjct: 319 STQSRILVRALQMLKVGGRVVYSTCSLNPVENEAVVASAIERCGGAANVKIVDCSQELPG 378 Query: 395 --------------------SAYWKSIDMAMALSPEGWIRI-------------TP-DML 420 + + + + G R+ P D Sbjct: 379 LKRASGLHNWKVMDREGRMWNNWQEVEEHRDQEGINGLARLAEGMFAPTGEAANLPLDRC 438 Query: 421 EKIDGVSSGMDGFFAVALRR----LIQPK 445 ++ GFF L + +P+ Sbjct: 439 MRVYPHQQDTGGFFITVLEKTSEIKAKPE 467 >gi|238488983|ref|XP_002375729.1| methyltransferase (Ncl1), putative [Aspergillus flavus NRRL3357] gi|220698117|gb|EED54457.1| methyltransferase (Ncl1), putative [Aspergillus flavus NRRL3357] Length = 876 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 71/398 (17%), Positives = 118/398 (29%), Gaps = 117/398 (29%) Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV 213 ERL+ FY E + ++ D W+ ++ + Sbjct: 75 ERLKEFYIPEITSIKYEGNFVEPPRPVSWYPDQLAWSMTTPKQVVRRFAPFANFQKFLVA 134 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------- 264 A G Q+ + IP L ++VLD+CAAPG K+AQL+ Sbjct: 135 ET---AVGSISRQEVVSMIPPLLLDVKPGMTVLDMCAAPGSKSAQLMEMIHAGEEESMSQ 191 Query: 265 ----------------------------KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 + A D +R L + RL + Sbjct: 192 ASKQVKEGTAGPEPLGPEGLNDDGRTTGLLIANDTDYKRAHMLIHQMKRLSSPNLIVTNH 251 Query: 297 DAFDYC----------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 DA Y FD +L D PC+ GT R++ V + + Sbjct: 252 DATMYPSIKLPSPPGPSGKVQNKYLKFDRILADVPCTGDGTPRKNIGVWKEWTPGNALGL 311 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP------------- 387 Q ++L++ + +K GG VV+S CS++ ++E VV + Sbjct: 312 YATQVRILVRALQMLKVGGRVVYSTCSMNPVENEAVVASAIERCGGAANVRIVDCSNELP 371 Query: 388 -VELVP-----------------------------------LNSAYWKSIDMAMALSPEG 411 ++ VP + + + L E Sbjct: 372 GLKRVPGLKTWKVMDRDTRMWNTWEEIEEHRASQGISGLGRVAAGMFPPTGENADLPLER 431 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 IRI P + + GFF L + +P+ Sbjct: 432 CIRIYPHLQD--------TGGFFITVLEKQSEIRAKPE 461 >gi|317025699|ref|XP_001389625.2| methyltransferase (Ncl1) [Aspergillus niger CBS 513.88] Length = 880 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 74/245 (30%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------------PKKLFDA 309 A D +R L + RL + DA + FD Sbjct: 218 IANDADYKRAHMLIHQMKRLSSPNLIVTNHDATMFPSIRLPPEPAPEGKPVKNKYLKFDR 277 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + ++ + Q ++L++ + +K GG VV+S CS++ Sbjct: 278 ILADVPCTGDGTARKNWGVWKDWNYNNALGLYATQVRILVRALQMLKVGGRVVYSTCSMN 337 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL------SPEG------------ 411 ++E V+ L + S + A L EG Sbjct: 338 PIENEAVIASALERCGSANVRILDCSNELPGLKRAPGLKTWKVMDREGRMYNSWKEVEER 397 Query: 412 ---------------------------WIRITPDMLEKIDGVSSGMDGFFAVALRRL--- 441 +RI P M + GFF L ++ Sbjct: 398 KEREGISGLGRVAEGMFPPTEDLPLDRCLRIYPHMQD--------TGGFFITVLEKVSEI 449 Query: 442 -IQPK 445 +P+ Sbjct: 450 RAKPE 454 >gi|255581738|ref|XP_002531671.1| conserved hypothetical protein [Ricinus communis] gi|223528702|gb|EEF30715.1| conserved hypothetical protein [Ricinus communis] Length = 843 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 105/273 (38%), Gaps = 42/273 (15%) Query: 199 PTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 ++L+ +I + + + I + + + +LD+CAAPG KT Q Sbjct: 152 FHEFLKLENEIGNITRQEAVSMIISILIFHVLFIYLTSYILXPDHFILDMCAAPGSKTFQ 211 Query: 259 LIV-----------SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL- 306 L+ V A D+ +R L R+ + +A + + Sbjct: 212 LLEIIYQSTKPGSLPNGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNNEAQHFPGCRAN 271 Query: 307 -------------------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKL 347 FD VL D PCS GT+R+ PD+ ++ Q ++ Sbjct: 272 KSCTKASEIEFEPPIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNSGMGNGLHVLQIQI 331 Query: 348 LLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 ++G+S +K GG +V+S CS++ ++E VV ++LR VEL+ ++S + + Sbjct: 332 AMRGMSLLKVGGRMVYSTCSMNPVENEAVVAEILRKCGGSVELLNVSSELPQLVRRP--- 388 Query: 408 SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +R + I S D RR Sbjct: 389 ----GLRKWKVRDKGIWLSSHK-D---VSKFRR 413 >gi|84999818|ref|XP_954630.1| methyl transferase [Theileria annulata] gi|65305628|emb|CAI73953.1| methyl transferase, putative [Theileria annulata] Length = 667 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 75/400 (18%), Positives = 133/400 (33%), Gaps = 62/400 (15%) Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + R E F K + K E + S IP RL R Sbjct: 47 NQRENGRTRFVEGTLFNKEFEKYYKDQKICKEEEWKMFEEYSRIPLPVSFRLNTSSFLWR 106 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 DL ++ ++ L ++K S+ FA+ + Sbjct: 107 -HTRDKLKQMCDSEDLYLEPCLDYCPEYLKNEEDYNIFFQMKASKSSLRKNENFAQFHQF 165 Query: 225 VQDA-----------SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----------- 262 + + + +PV N ++LD CAAPG K Q++ Sbjct: 166 LMNEDNRGSLCRQETVSMLPVLFLDPKPNENILDFCAAPGMKYLQIVDMVETRLKWQNLD 225 Query: 263 ----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------FDAVL 311 + DVS+ R+ L +L + + I DA + FD +L Sbjct: 226 SLKNKGIIVGNDVSQTRVSTLAHHLKSIDSPSTAITNYDATRFPNLYNNKGQLILFDKIL 285 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ D+ + + Q +L +GI +KPGGI+++S CSL+ Sbjct: 286 ADMPCSCDGTMRKSIDIWTNWKATNGLHLHKVQLTILKRGIELLKPGGILIYSTCSLNPL 345 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWI------------RIT 416 ++E + + + + + + + L P+ G+ RI Sbjct: 346 ENEAIASYCASNEDVELVDLEPIQGFKTEKGLTDWLVPDLNGGYFSDFSQVNDNLKERIK 405 Query: 417 PDMLE-------------KIDGVSSGMDGFFAVALRRLIQ 443 M ++ + GFF +R++ + Sbjct: 406 ETMFRSSKWNEEMAKKVMRVLPHYNNTGGFFIFKIRKVTK 445 >gi|322821344|gb|EFZ27696.1| hypothetical protein TCSYLVIO_6086 [Trypanosoma cruzi] Length = 635 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 62/269 (23%), Positives = 96/269 (35%), Gaps = 50/269 (18%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKR 274 G Q+ + +P L VLD+CAAPG KT+Q+ + V A D++ Sbjct: 158 GYLTRQETVSMLPPVLLQVRPGHRVLDMCAAPGSKTSQILEALIPSMEDGVVVANDINTS 217 Query: 275 RLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 RL+ L +R HL + FD VL D CS GT+R+ D+ Sbjct: 218 RLDVLLHQTNRSAAAHSHLIVTSYDATQFPLLPSESKFDRVLCDVMCSGDGTLRKSMDMW 277 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + + Q ++LL+G+ K GGIVV+S CSL+ + E VV + L + Sbjct: 278 PRWNVFQGAELHNTQIRVLLRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLLQAKGAFR 337 Query: 390 LVPLNSAYW-----KSIDMAMALSPEGWIRIT------------------------P--- 417 L+ S +D L+ + R+ P Sbjct: 338 LMDPTSLVPGLVAAPGLDDWSLLTKDLKARLHTMEEAQVFAETSASSGISYRATMFPNKA 397 Query: 418 -------DMLEKIDGVSSGMDGFFAVALR 439 ++ GFF + Sbjct: 398 RLQEQNIHYTRRVLPHLQDTGGFFVAVME 426 >gi|305664020|ref|YP_003860308.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230] gi|304378589|gb|ADM28428.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230] Length = 417 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 87/446 (19%), Positives = 172/446 (38%), Gaps = 56/446 (12%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + L V R+RIS R +S D+ + + + ++ + Sbjct: 11 ATTLYTVKRRRISTRRAFSYVCRRFGCR-ISGIDREELYRLAIDFITNYHKL-----LYI 64 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 S+ + S + L ++ + + + E+ + A+ + I R Sbjct: 65 AKSIRGSEPSHKTLAKIYLY----------LKLRESGEKIPTKLR-KAIARDIPGIERSY 113 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPL-YIDLT-VKFDIETW 189 S E++ + +P+W ++L +E V + A + +I + ++ DI+ Sbjct: 114 SVEEL------WALYSVPKWIYDKLSMVLPREDVEELFRAINRRVLWIRINTLRIDIDKA 167 Query: 190 AHKLN-------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L +R+ + I +L F G +QD ++ V + Sbjct: 168 LKVLENSDVVFIQDKTYPFILRIVKTKRPIRTLELFKNGSIVIQDKASIFTVLALRPEPD 227 Query: 243 LSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMD 297 + + D AAPG KT+ ++ + A++ A+D+S+RRLE ++ L R + D++ D Sbjct: 228 MVIYDFAAAPGIKTSLIMQLTENRARIIAIDLSRRRLEAMKLLLKRYGVDTSRVDLVLSD 287 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVK 356 + + DA L+DA CSS+G + + P + RD K Q +L + + Sbjct: 288 SRYISMARKADASLIDAVCSSSGAMPKDPSIRIILRDPSIPEKMKKIQIAMLENTLRYTD 347 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR-- 414 I V++ CSL ++ EEVV+ + + + + G+ R Sbjct: 348 ---IAVYAVCSLFPEEGEEVVETL------------TDRGIEHRVVDTRIPTSRGYKRYK 392 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRR 440 I ++ + +GFF L R Sbjct: 393 IW-SLVSRTFPHIDECEGFFIARLER 417 >gi|223997102|ref|XP_002288224.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975332|gb|EED93660.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 396 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 91/286 (31%), Gaps = 68/286 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ------------------LI 260 G Q+ + IP + +SVLD+CAAPG KT Q + Sbjct: 111 DCGHITRQETVSMIPPVVLDAKEGMSVLDMCAAPGSKTCQILEAVGGMPAKDGEISGSNV 170 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDA 309 + A D +R L L RL A + D + + +FD Sbjct: 171 EPKGYIVANDADPKRAYMLVTQLRRLQSPAVFVTSADGQFFPVLDEKNVRGTDKEGMFDR 230 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 VL D PCS GT+R++P + + + Q + L+G GG VV+S CS++ Sbjct: 231 VLCDVPCSGDGTVRKNPGIWKQWNQLGALALHPLQLSIALRGARLAHVGGYVVYSTCSMN 290 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA----------------------- 406 ++E VV ++LR + +EL I Sbjct: 291 PTENESVVAELLRIADGALELEDPRERMEGLIARPGWSSWKATLSERTNSLGFVEYASYD 350 Query: 407 ----------------LSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E R + GFF Sbjct: 351 DVEPEWRRRVRESCFPPTEEEAKRFQLHKSLRCLPHDMDTGGFFVA 396 >gi|218190325|gb|EEC72752.1| hypothetical protein OsI_06382 [Oryza sativa Indica Group] Length = 479 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 85/419 (20%), Positives = 144/419 (34%), Gaps = 56/419 (13%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVLDF--VLISSLPRKKYSLQQLLRVSVAQILYLDVA 99 S R++ A+V TL++LP + VL VL S +++ + V+ IL+ Sbjct: 47 SVRNKRATFALVCQTLKYLPILKEVLASTGVLTSKWKKQEELVF----VTAYDILFGQET 102 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 + + +D K+ R + + + + R Sbjct: 103 AASGSVEQLIMLHKDTIMAALEKMCIRRKVRSVEDLVSKKRTVKPKPRFLRVNTLRTSTD 162 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 E + I L DL V + + + Sbjct: 163 SVVEELNKIHKVDKDELVPDLLVLP-----------------------PGTDLHNHHLVS 199 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 EG ++Q ++ + V+D CAAPG KT L + +TA +++K R Sbjct: 200 EGKVFLQGKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERT 259 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVL--- 329 + L+ + R + I D D A+L+D CS +G D L Sbjct: 260 KTLQNTIRRSGANNIETINGDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPS 319 Query: 330 WTRDTDDIV-------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 +R D K + FQRK L +SF VV+S CS+ + ++E+VV VL Sbjct: 320 HSRGNQDDASTSSRIRKLSAFQRKALSHALSFPSVE-RVVYSTCSIHQAENEDVVSSVLP 378 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + W+ + + E +R P G++GFF R Sbjct: 379 LASSLGFELATPFPQWRRRGLPVFEGSEHLLRTDP---------EDGLEGFFISLFVRK 428 >gi|241958118|ref|XP_002421778.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223645123|emb|CAX39720.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 504 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 80/427 (18%), Positives = 143/427 (33%), Gaps = 39/427 (9%) Query: 49 VRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQ-LLRVSVAQILYLDVADYAVVDL 106 + A+V TL++ ID ++ + L KK + LL + + +L+ Sbjct: 80 IFALVYSTLKYKEYIDVIIKKSKIRQDLQFKKAKISNELLCLMIHDLLFSSKGRIQSGKH 139 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIP-EWFKERLENFYGKERV 165 ++ A + R A+ + L+ + +L + A P WF+ Sbjct: 140 PLKDAFLSNKTRLQAEFIKLKLKYKVKSVDQLPTKEADEDETPIRWFRINTIKIDKDRFY 199 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + + + E I S + G + Sbjct: 200 TKHPFFQKLQPVSSIDEITGT-----GMIYSDDYIPNLFGVHPREKITSTEAYRLGEIII 254 Query: 226 QDASASIPVQL---FGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRLEK 278 QD ++ P + + V+D CAAPG KT + V A + +R++ Sbjct: 255 QDRASCFPSHILNSDPKDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVYAFERDPKRVKI 314 Query: 279 LRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAV--LVDAPCSSTGTIRRHPDVLWTR 332 L+ ++ A + D P D +VD CS +G R + Sbjct: 315 LKTMCEKATGKAKKKLIQVTHADFTTTKPDDFPDVTGLVVDPSCSGSGIFGRALEDSHNE 374 Query: 333 DTDDI------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----- 381 + + K A FQ ++ +SF VV+S CS+ Q++E VV +L Sbjct: 375 EETENVNTERLNKLAGFQFAIMKHALSF-PSAKKVVYSTCSIHAQENERVVVDLLSDPEV 433 Query: 382 -----RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + + V L + + + M+ PE R+ + + G GFFA Sbjct: 434 NRRGWKLADREVVLPKWDRRGLEEEFVKMSRDPEECTRLAGGCVR-ANPKQDGGIGFFAA 492 Query: 437 ALRRLIQ 443 R Q Sbjct: 493 CFVRPAQ 499 >gi|221481020|gb|EEE19432.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 964 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 42/177 (23%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VL D PCS+ GT+R+ + ++ + Q ++LL+GI K G +V+S C Sbjct: 257 FDCVLCDVPCSADGTLRKARSLWTRWHSNQGLGCHRLQLQILLRGIKLCKVNGRIVYSTC 316 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS------PEGWIRI----- 415 S + ++E VV L + VELV + + E + R Sbjct: 317 SFNPVENEAVVAAALEKTKGAVELVDCSGVLPTLQRRPGLKTWRVYWQKEFYDRFEDVPQ 376 Query: 416 ------------------------------TP-DMLEKIDGVSSGMDGFFAVALRRL 441 P + + GFF L + Sbjct: 377 TSAARQKVRPTMFPQYAASKAGEGKNGQDGLPLHRCMRFLPHLNNTGGFFVAVLEKK 433 >gi|15605282|ref|NP_220068.1| RNA methyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|3328993|gb|AAC68155.1| RNA Methyltransferase [Chlamydia trachomatis D/UW-3/CX] gi|297748683|gb|ADI51229.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis D-EC] gi|297749563|gb|ADI52241.1| 16S rRNA m(5)C 967 methyltransferase [Chlamydia trachomatis D-LC] Length = 325 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 9/264 (3%) Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 I + E L YG+E + ++ + + V + Sbjct: 46 QFQHLPWPVRYSISDDLAECLTTDYGEEEAIRLAKIFLEEAPCSIRVNTRRISVDKLQKV 105 Query: 196 VMLPTGGIRL-----KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCA 250 + P E + F G++ +QD S+ I ++ +VLD CA Sbjct: 106 LPFPCQRGAAPSSLRFEKRYPLQHTRAFRRGLFEIQDESSQIITNAILIKDSDTVLDFCA 165 Query: 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAV 310 GGK+ VT D + LE+ R L R + I K F V Sbjct: 166 GAGGKSLIFAQRARHVTLHDSRPQALEEARHRLSRSGIKNFTIPS----QPLKKHSFSLV 221 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 +VDAPC+ +G RRHP+ + ++ Q ++L + +++V P G +V+ CSL K Sbjct: 222 VVDAPCTGSGVFRRHPEKKLLFSKQLLHNNSIAQERILKEALAYVAPCGRLVYITCSLMK 281 Query: 371 QDSEEVVQKVLRSSPIPVELVPLN 394 +++E+ + V+ V + Sbjct: 282 EENEKHTSWMASQGWKCVKEVKIP 305 >gi|195377779|ref|XP_002047665.1| GJ11797 [Drosophila virilis] gi|194154823|gb|EDW70007.1| GJ11797 [Drosophila virilis] Length = 413 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 20/231 (8%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT + + ++ ALD S R+ ++ Sbjct: 185 QNLPSMVCVRVLAPQPGERILDMCAAPGNKTTHIAELMGDVGQIIALDNSASRMRAMQTK 244 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKL-------------FDAVLVDAPCSSTGTIRRHPDVL 329 L + DA + FD +L+DAPCS G R Sbjct: 245 LGNY--DCIQAHQFDATKAWNEHSAIDSTAPPFASSSFDRILLDAPCS--GLGNRPQLCC 300 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + T + QR LL Q + ++PGG++V+S C++ + + E++V LR P Sbjct: 301 SIKQTKVLQSYPPIQRSLLAQAVPLLRPGGVLVYSTCTITEAECEQLVSWALRKFPQLQL 360 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + + + + + + GFF ++ Sbjct: 361 VDATPKLGAPGLPLPELNAAQCELLQRFGPTNENRVQNLDTVGFFIAKFQK 411 >gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens DSM 7] gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens DSM 7] gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus amyloliquefaciens TA208] gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens LL3] Length = 130 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I+ ++ +V + Sbjct: 1 MKRRT-AREKALQALFQIDVSDIAPNEAIEHALDGEKTD-------AFFEQLVYGVIEHQ 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR++V +++Y D+ ++ A+E AKR + Sbjct: 53 VQLDEMISGHLVNWKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELAKRF-GDD 111 Query: 119 HFAKLVNSILRR 130 AK VN +L Sbjct: 112 KAAKFVNGVLSN 123 >gi|194218912|ref|XP_001916205.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 5 [Equus caballus] Length = 420 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 26/245 (10%) Query: 214 SLPGFAEGVWWVQDASAS---IPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVT 267 ++ F + Q ++S P L V+D AAPG KT+ L K+ Sbjct: 150 AIDYFKRQGFSYQGQASSTAVFPAMLLAPHRVSHVIDADAAPGNKTSHLAALLKKQGKIF 209 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIR 323 A D+ +RL + L R + ++ + D P + +L+D CS +G + Sbjct: 210 AFDLDAKRLASMATLLARAGVSCCELAKEDFLAVSPSDQRYRQVQYILLDPSCSGSGMLT 269 Query: 324 RH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQK 379 R + + A FQ++ L ++F ++ +V+S CSL ++++E+VV Sbjct: 270 RQLEEPGAGAPSKERLHALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDVVCD 326 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 L+ SP L P+ + W + E +R +P+ GFF L Sbjct: 327 ALQQSPGAFRLAPVLPS-WPHRGLCTFPGAEHCLRASPETTL--------TGGFFIAVLE 377 Query: 440 RLIQP 444 R+ P Sbjct: 378 RVEVP 382 >gi|290985269|ref|XP_002675348.1| predicted protein [Naegleria gruberi] gi|284088944|gb|EFC42604.1| predicted protein [Naegleria gruberi] Length = 424 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 69/341 (20%), Positives = 126/341 (36%), Gaps = 43/341 (12%) Query: 135 KIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI--ETWAHK 192 IA + I K+ E ++ I + +I + T + Sbjct: 91 NCHSGSEIAILCDISSQTKKGFRFEKTIEEMIQIDENTKYQNFIYVGNGILKMDRTSIFQ 150 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 N + + S+ + ++ Q+ + + L +LD+CA P Sbjct: 151 ANVKGIGLEVTQPFYETCSLNEISQTYYNEFFAQNICSMVVAHLLDPKKGEKILDMCACP 210 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD------------ 297 GGKT + + + ++ D K +++ L+ ++L +D Sbjct: 211 GGKTTHISNLMENEGELICCDRQKGKVDLLKKLSEKLGYSVMKPTVLDGTKATRRVNTDS 270 Query: 298 -------------AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 + + FD VLVDAPCS G +R D + K+A +Q Sbjct: 271 SENQKSKKRKTNEEQVFLEENYFDRVLVDAPCS--GLGQRPTLSFKEFSLDSLKKTAEYQ 328 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM- 403 RK+L + +KPGGI+VFS C++ ++EE V +L + +EL+ N + S + Sbjct: 329 RKILAEAFKVLKPGGILVFSTCTISPMENEENVLWMLENFHSKIELLTPNMTAFASEGLS 388 Query: 404 ---AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + +R P + GFFA ++L Sbjct: 389 SIISDSSIRSKVLRFDPVTTPE-------TIGFFACKFKKL 422 >gi|317137034|ref|XP_003190009.1| methyltransferase (Ncl1) [Aspergillus oryzae RIB40] Length = 874 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 77/248 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------------PKKLFDAV 310 A D +R L + RL + DA Y FD + Sbjct: 220 IANDTDYKRAHMLIHQMKRLSSPNLIVTNHDATMYPSIKLPSPPGPSGKVQNKYLKFDRI 279 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 280 LADVPCTGDGTPRKNIGVWKEWTPGNALGLYATQVRILVRALQMLKVGGRVVYSTCSMNP 339 Query: 371 QDSEEVVQKVLRSSPIP--------------VELVP------------------------ 392 ++E VV + ++ VP Sbjct: 340 VENEAVVASAIERCGGAANVRIVDCSNELPGLKRVPGLKTWKVMDRDTRMWNTWEEIEEH 399 Query: 393 -----------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR- 440 + + + L E IRI P + + GFF L + Sbjct: 400 RASQGISGLGRVAAGMFPPTGENADLPLERCIRIYPHLQD--------TGGFFITVLEKQ 451 Query: 441 ---LIQPK 445 +P+ Sbjct: 452 SEIRAKPE 459 >gi|169763120|ref|XP_001727460.1| methyltransferase (Ncl1) [Aspergillus oryzae RIB40] gi|83770488|dbj|BAE60621.1| unnamed protein product [Aspergillus oryzae] Length = 876 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 76/248 (30%), Gaps = 77/248 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------------PKKLFDAV 310 A D +R L + RL + DA Y FD + Sbjct: 222 IANDTDYKRAHMLIHQMKRLSSPNLIVTNHDATMYPSIKLPSPPGPSGKVQNKYLKFDRI 281 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 282 LADVPCTGDGTPRKNIGVWKEWTPGNALGLYATQVRILVRALQMLKVGGRVVYSTCSMNP 341 Query: 371 QDSEEVVQKVLRSSPIP--------------VELVP------------------------ 392 ++E VV + ++ VP Sbjct: 342 VENEAVVASAIERCGGAANVRIVDCSNELPGLKRVPGLKTWKVMDRDTRMWNTWEEIEEH 401 Query: 393 -----------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR- 440 + + + L E IRI P + + GFF L + Sbjct: 402 RASQGISGLGRVAAGMFPPTGENADLPLERCIRIYPHLQD--------TGGFFITVLEKQ 453 Query: 441 ---LIQPK 445 +P+ Sbjct: 454 SEIRAKPE 461 >gi|124027719|ref|YP_001013039.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus butylicus DSM 5456] gi|123978413|gb|ABM80694.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus butylicus DSM 5456] Length = 433 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 76/448 (16%), Positives = 160/448 (35%), Gaps = 48/448 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILV---RAIV--NVTLRFLPRIDAV 66 + +L V+ + +S + L ++L IV T+R Sbjct: 13 ARVLYHVLTRHVSHDRAYQAAAREYRKALNIVPPRVLYKVSHDIVSDYHTVRH------- 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++ + + K + + L + + YL +D ++ + Sbjct: 66 IEKYVYGATGGSKRAARLWLALLGPEKEYL----QPYIDGVERLRRKLLKTLPRH---VE 118 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP-LYIDLT-VKF 184 + V +++A P WF + + G + + +I + +K Sbjct: 119 SIEDVIETAGSEAEKLAIKYSFPTWFTKLILQLLGPYSAERLLASLNEEKWWIRVNTLKA 178 Query: 185 DIETWAHKLNAVMLP-------TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF 237 D + A +L + + + + E + L G QD ++++ V+ Sbjct: 179 DPDRVAARLEEKGVIVRRDRDLPYMLEVVDFSEPLHHLEEMWRGEIVFQDKASAMVVEAL 238 Query: 238 GTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--ED 292 +LDL AAPG K QL + A++ A+DVS RL++ + L + + Sbjct: 239 EPEPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARLQRTKRLLRMYGVDISRIE 298 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQG 351 +++ D+ + V++DAPC+S+G + + P + D + + Q +L Sbjct: 299 VVQADSTTLHLRLKPSKVMLDAPCTSSGAVGKDPAIKLHLDDLNWVARFPPLQAAMLETA 358 Query: 352 ISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG 411 + + P V++ CS+ + EE V K++ + + +A+ ++ Sbjct: 359 LKYRAPA---VYAVCSILPMEGEEQVVKIIERGAASLRRPRIPAAHGYAV---YGDVARK 412 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALR 439 R P + GFF L Sbjct: 413 TARFLPSL--------HQTQGFFISLLE 432 >gi|145592415|ref|YP_001154417.1| Fmu (Sun) domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145284183|gb|ABP51765.1| Fmu (Sun) domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 414 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 78/439 (17%), Positives = 145/439 (33%), Gaps = 48/439 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L + K ++L + +V +R + + Sbjct: 13 AKVLYEI-SKGLTLDYAFQKVKRGWRELDSFKV----FYDVVYDAVRHYYFLQFAASKMF 67 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 SS + + R +LY V ++ R K + + Sbjct: 68 GSSGAKAIAKAWFIFR--ADSLLYNK--------DMVYSVRKRLLKRALTKPDHVMAALE 117 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWA 190 + S P L +F +E + + +++ + +K D++ Sbjct: 118 ELREDRARYFSVKYSYHPNIVSTLLSHFPPEEVERLLEAGNHTWIWLRINTLKADVDKAL 177 Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L A ++ + L V QD ++ V Sbjct: 178 RLLEAEAEVEPHPKIPFAVLLKSAKRPVQYLEAVRRFVAVPQDLASIYAVLSLRPEPGDR 237 Query: 245 VLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 ++DL AAPG KT+ QL AK+ A+D+S +R+ ++R L L + Sbjct: 238 IIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVARMRHLLKNLGAGDFVEVVRADSRV 297 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD L+DAPC+S+G + P V ++ K + Q+ L+ ++ + V Sbjct: 298 LKTRKFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPKYSAVQKALIKNALALAE---EV 354 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CS+ Q+ EEV A D+A + +P R P + Sbjct: 355 VYAVCSILPQEGEEVAASA------------GAEAEKPHPDLAPSYTPGVGGRTFPHIHR 402 Query: 422 KIDGVSSGMDGFFAVALRR 440 FF LR+ Sbjct: 403 SEA--------FFISRLRK 413 >gi|134055744|emb|CAK44117.1| unnamed protein product [Aspergillus niger] Length = 771 Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 77/245 (31%), Gaps = 74/245 (30%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------------PKKLFDA 309 A D +R L + RL + DA + FD Sbjct: 218 IANDADYKRAHMLIHQMKRLSSPNLIVTNHDATMFPSIRLPPEPAPEGKPVKNKYLKFDR 277 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + ++ + Q ++L++ + +K GG VV+S CS++ Sbjct: 278 ILADVPCTGDGTARKNWGVWKDWNYNNALGLYATQVRILVRALQMLKVGGRVVYSTCSMN 337 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL------SPEG------------ 411 ++E V+ L + S + A L EG Sbjct: 338 PIENEAVIASALERCGSANVRILDCSNELPGLKRAPGLKTWKVMDREGRMYNSWKEVEER 397 Query: 412 ---------------------------WIRITPDMLEKIDGVSSGMDGFFAVALRRL--- 441 +RI P M + GFF L ++ Sbjct: 398 KEREGISGLGRVAEGMFPPTEDLPLDRCLRIYPHMQD--------TGGFFITVLEKVSEI 449 Query: 442 -IQPK 445 +P+ Sbjct: 450 RAKPE 454 >gi|325117528|emb|CBZ53080.1| Multisite-specific tRNA m(5)C methyltransferase, related [Neospora caninum Liverpool] Length = 1028 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 60/179 (33%), Gaps = 44/179 (24%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VL D PCS+ GT+R+ + ++ + Q ++LL+GI K G +V+S C Sbjct: 274 FDCVLCDVPCSADGTLRKARSLWTRWHSNQGLGCHRLQLQILLRGIKLCKVNGRIVYSTC 333 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR------------ 414 S + ++E VV L + VELV + + + + + Sbjct: 334 SFNPVENEAVVAAALEKTKGAVELVDCSGVFPALERRPGLHTWRVYWQKEFYDRYEDVPD 393 Query: 415 -------ITP-------------------------DMLEKIDGVSSGMDGFFAVALRRL 441 I P + + GFF L + Sbjct: 394 TSASRQKIRPTMFPQYAASKAAGDGDGKRQEGPPLHRCMRFLPHLNNTGGFFVAVLEKK 452 >gi|242080145|ref|XP_002444841.1| hypothetical protein SORBIDRAFT_07g029085 [Sorghum bicolor] gi|241941191|gb|EES14336.1| hypothetical protein SORBIDRAFT_07g029085 [Sorghum bicolor] Length = 809 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 123/332 (37%), Gaps = 37/332 (11%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 + ++ + +N + + + I + E + + Sbjct: 86 EEYYKVQQIVRKEEWDAFMNVLRKPLPVAFRINACCQFYKDICSKLENEFRRSLESEVSN 145 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 DA + + + + +L + + + Sbjct: 146 EHGEDAIAPLPWYPCNLAWHLNFSRKELRKNQALESFHEFLKHESEVGN--------ITR 197 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDVSKR 274 Q+A + +P + +LD+CAAPG KT QL+ GA V A D++ R Sbjct: 198 QEAVSMVPPLFLNVQPDHHILDMCAAPGSKTFQLLEIIHLSKEPGLLPGALVIANDLNVR 257 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------------------LFDAVLVDAPC 316 R + L N R+ + + +A ++ FD +L D PC Sbjct: 258 RCDLLIHNTKRMCTASLIVTNHEAENFPYCSLAKDYLESYKDPCKLQRLEFDRILCDVPC 317 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GTIR+ D+ ++ + Q + ++GI+ +K GG +V+S CS++ ++E V Sbjct: 318 SGDGTIRKGHDMWRKWNSGMGNQLHLLQVNIAMRGIALLKVGGRMVYSTCSMNPVENEAV 377 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + ++LR S VEL+ ++S + + + Sbjct: 378 IAELLRRSGNSVELLDVSSELPELVRRPGLTT 409 >gi|325187549|emb|CCA22087.1| tRNA (cytosine5)methyltransferase putative [Albugo laibachii Nc14] Length = 569 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 25/218 (11%) Query: 204 RLKELPESIVSLPGF-----AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + + E + F G + Q+ + +PV VLD+CA+PG KT+Q Sbjct: 1 MVASMYEDVRQFHAFLLWHTETGCFDRQEVVSMLPVLWLQLEPQNFVLDMCASPGSKTSQ 60 Query: 259 LIVS----------GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------ 302 ++ V A D+ ++R L L R L + + Sbjct: 61 IVDFLSTKHESEELDGMVVANDIDRKRGYMLVRRLLRNSLGNAVVSCCSGDQFPGLYDST 120 Query: 303 ----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 FD VL D PCS GT+R+ + + Q L ++G + +K G Sbjct: 121 GTLRSTNTFDRVLCDVPCSGDGTLRKKLRLWMDWHIGQGLTLHSTQIALAMRGAALLKVG 180 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 GI+V+S CS + ++E VV +VLR S +ELV L+ Sbjct: 181 GIMVYSTCSFNPVENEAVVSEVLRRSDGALELVDLSDD 218 >gi|158253936|gb|AAI53973.1| Zgc:77183 protein [Danio rerio] Length = 335 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 25/265 (9%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D++ + K+ L + + + G +Q ++ +P L Sbjct: 68 DLDRLSGKMFLCDLHLKDLLVFSGKTDFHDHFLYKAGHIILQGKASCLPAFLLNPPVGSH 127 Query: 245 VLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 V+D CAAPG KT+ ++ + K+ A D+ +RL + L R + + D Sbjct: 128 VIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAKRLSTMSTLLLRAGVTCHKLANQDFLKV 187 Query: 302 CPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF--V 355 P+ +L+D CS +G + ++ T++ + A FQ L + F + Sbjct: 188 DPQNSEYKEVKYILLDPSCSGSGMVCLRDELPETQEDGRLQALAAFQLHCLNHALQFPQL 247 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 + +V+S CS+ Q++EEVV L+ +P LV L + + + +R Sbjct: 248 E---RIVYSTCSIHSQENEEVVTACLQRNPG-FRLVHLLPDWPERGHEPLT----QCLR- 298 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + GFF L R Sbjct: 299 -------ASTAKTRTHGFFVAMLER 316 >gi|237831111|ref|XP_002364853.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii ME49] gi|211962517|gb|EEA97712.1| NOL1/NOP2/sun family domain-containing protein [Toxoplasma gondii ME49] gi|221506984|gb|EEE32601.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 1097 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 59/177 (33%), Gaps = 42/177 (23%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VL D PCS+ GT+R+ + ++ + Q ++LL+GI K G +V+S C Sbjct: 390 FDCVLCDVPCSADGTLRKARSLWTRWHSNQGLGCHRLQLQILLRGIKLCKVNGRIVYSTC 449 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS------PEGWIRI----- 415 S + ++E VV L + VELV + + E + R Sbjct: 450 SFNPVENEAVVAAALEKTKGAVELVDCSGVLPTLQRRPGLKTWRVYWQKEFYDRFEDVPQ 509 Query: 416 ------------------------------TP-DMLEKIDGVSSGMDGFFAVALRRL 441 P + + GFF L + Sbjct: 510 TSAARQKVRPTMFPQYAASKAGEGKNRQDGLPLHRCMRFLPHLNNTGGFFVAVLEKK 566 >gi|47220465|emb|CAG03245.1| unnamed protein product [Tetraodon nigroviridis] Length = 429 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 99/266 (37%), Gaps = 28/266 (10%) Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 T K + + + + G +QD ++ +P L V+D Sbjct: 168 TLKEKEFLRDMHLPELLVFSPRTDFHEHFLYKSGHIILQDKASCLPAYLLDPPAGSHVID 227 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 CAAPG K++ ++ + ++ A D+ +RL + L R + + + D PK Sbjct: 228 ACAAPGNKSSHLAAIMKNKGRLFAFDLDAKRLTTMSTLLLRAGITCQQLANQDFLKVDPK 287 Query: 305 KLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLLLQGISF--V 355 +L+D CS +G + + + A Q + L G+SF + Sbjct: 288 NPQYKDVEYMLLDPSCSGSGMACLPHEESCDDQEEVRARLASLASFQLRCLNHGLSFPRL 347 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 K +V+S CS+ Q++E+VV L+ +P LV L + + + +R Sbjct: 348 K---RLVYSTCSIHSQENEQVVAACLQQNPG-FRLVSLLPQWPERGQEPLT----QCLR- 398 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 + GFF +L Sbjct: 399 -------ASIQKTRTHGFFVALFEKL 417 >gi|15921679|ref|NP_377348.1| Sun family protein [Sulfolobus tokodaii str. 7] gi|15622466|dbj|BAB66457.1| 349aa long hypothetical sun protein [Sulfolobus tokodaii str. 7] Length = 349 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 42/233 (18%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALD 270 L +G +Q ++ L N ++D+ A PGGK + + D Sbjct: 152 ADLEYVKDGSLILQGKASMYVAHLLDPKPNEKIIDMTAYPGGKLTHIYQLEPRSKVIGFD 211 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK---LFDAVLVDAPCSSTGTIRRHPD 327 +K+++++LR + ++ + ++ D+ D V++D PCS+ G P Sbjct: 212 HTKKKVDELREKVKKMKM-NIEVYLADSRYLYEGFGLRDVDKVIIDPPCSALGI---RPK 267 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 V + +DI+ +QR+ + +K GI+V+S C++ ++E+V+ Sbjct: 268 VYDRKTKEDIINFHNYQRQFINSAYKILKKNGILVYSTCTVTTWENEKVIDD------ER 321 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E+ + IR P++ M GFF L + Sbjct: 322 FEVEDI-------------------IRFHPNI--------HDMTGFFIAKLIK 347 >gi|254569854|ref|XP_002492037.1| Putative protein of unknown function with seven beta-strand methyltransferase motif [Pichia pastoris GS115] gi|238031834|emb|CAY69757.1| Putative protein of unknown function with seven beta-strand methyltransferase motif [Pichia pastoris GS115] gi|328351472|emb|CCA37871.1| hypothetical protein PP7435_Chr2-0174 [Pichia pastoris CBS 7435] Length = 436 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 139/419 (33%), Gaps = 53/419 (12%) Query: 49 VRAIVNVTLRFLPRIDAVL--DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD 105 V A+V R+ + ++ +L + K+ LL + +L+ Sbjct: 40 VYALVYSASRYKKFLKQIIRNSKLLEDKKIRAKEP----LLILMAHDLLFS--------- 86 Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 + + + R+ E +L + + + + + + Sbjct: 87 ---KNGRIQSGKHPLKDAFLAHKTRLQAELTKLKIKYKVKDLEELIEDDDTPVRWVRANL 143 Query: 166 LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 L S + L + + E I S + +G + Sbjct: 144 LKTSREKFLNEFKHLIQVESFQELEVGKIYHDQYIPNLFGVHPREKITSTDAYLKGRLII 203 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRLEKLRC 281 QD ++ P + ++D C+APG KT L + A + +R E L+ Sbjct: 204 QDRASCFPAHILHPSPGDKIIDTCSAPGNKTTHLASYLGNRPDSIIAFEKDPKRAEVLKT 263 Query: 282 NLDR-LHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR---HPDVLWTRDTD 335 + L DI D P+ D ++D CS +G R + T D Sbjct: 264 LCAKAGGLSCIDIQVGDFTATNPEDYTDIDGFVIDPSCSGSGIFGRAFEENEQDETYDDT 323 Query: 336 DIVKSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVLRSSPIPV------ 388 + K A FQ ++ + F P + +S CS+ Q++E VV +L+ S + Sbjct: 324 RLSKLASFQFTIVRHAMMF--PNAKKLTYSTCSVHPQENERVVVDLLKDSQVQAKGWKLC 381 Query: 389 ---ELVPLNSAYWKSIDMAMALSP----EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E++P + + + +P EG IR G GFF VA +R Sbjct: 382 TRDEVIPDWNRRGFEEEFSTFENPKELAEGCIR--------SKPKEDGGIGFFVVAFKR 432 >gi|70608021|ref|YP_256891.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius DSM 639] gi|68568669|gb|AAY81598.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius DSM 639] Length = 350 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 134/345 (38%), Gaps = 46/345 (13%) Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + A E +K+ + + + + R+K++ R PEW + +L Y Sbjct: 39 NEAYELSKKLILSYYS------LTFKTRRKKVKEFLRGKYEVKFPEWMEIQLSKIYDVNS 92 Query: 165 VLAISDACISPLYIDLT-VKFDIETWAHKLNA----VMLPTGGIRLKELPESIVSLPGFA 219 + + + + D E LN V + ++I + F Sbjct: 93 LKYWLMNKQKFTWFRVNTLIADEEKVIKNLNDKGVDVEKDNDIPYAYKTLDNITNTTEFK 152 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276 E VQD ++ V+ N +LDL +APG K +Q++ + AK+ DV K RL Sbjct: 153 ENKIIVQDKASMAVVEALKPEPNDHILDLASAPGIKVSQIMQLTENKAKLIVADVDKERL 212 Query: 277 EKLRCNLDRLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 EK R + + D +E+ D+ K+ + VL+DAPCSS+G I P +L Sbjct: 213 EKERLLFKKFGV-NVDRLELLLVDSSSLAIKRKVNKVLLDAPCSSSGAIWNEPTILLRLT 271 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + ++ A QRKLL VK G V+++ CS+ ++ E +V P+ Sbjct: 272 REKVLHYADQQRKLLNNA---VKLGDEVIYATCSMFMEEGELIVNDYTTQRPLSF----- 323 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L + +R P +GFF L Sbjct: 324 ------------GLDVKNGVRFVP--------YLHDTEGFFITKL 348 >gi|145603390|ref|XP_001404527.1| hypothetical protein MGG_13217 [Magnaporthe oryzae 70-15] gi|145011631|gb|EDJ96287.1| hypothetical protein MGG_13217 [Magnaporthe oryzae 70-15] Length = 819 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 59/411 (14%), Positives = 113/411 (27%), Gaps = 84/411 (20%) Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERV 165 + K E + + + ++ R G + +E Y E Sbjct: 36 ENEKLQKFYDELLQLPEEERAEFWTAYQRELPNSFRFCGSKGHASEVMKLMETRYIPEIT 95 Query: 166 LAISDACISPLYIDLTVKFDIETWA--------HKLNAVMLPTGGIRLKELPESIVSLPG 217 + + D+ W K + + +I Sbjct: 96 EIAYEGQPVDPPKAVPWYPDLLAWWMTTPKNVVRKFPPFAKFQKFLVSETSVGNISRQEV 155 Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLE 277 + + ++ ++ A + + A D +R Sbjct: 156 VKARISNFMNNLSADQSANTAP-----TVEDGADLEVDAGDDGRATGMLIANDAEYKRCH 210 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKK------------LFDAVLVDAPCSSTGTIRRH 325 L L RL + DA Y + FD +L D PCS GT+R++ Sbjct: 211 MLVHQLKRLSSPNLIVTNHDATLYPSIRIPSSDPNTNAYLKFDRILADVPCSGDGTLRKN 270 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV----- 380 ++ + Q ++L++ + +K GG +V+S CS++ ++E V+ Sbjct: 271 VNLWREWVPGSALGLHLTQTRILVRALQMLKVGGKMVYSTCSMNPVENESVINAAIDRCG 330 Query: 381 ----------------LRSSPI---------------PVELVPLNSAYWKSIDMAMALSP 409 L+ P E V + LS Sbjct: 331 GLNNVDILDSSDKLPGLKRRPGMKTWKVMDKSGRVWNNWEEVEGQLEVKDGKSLTGKLSK 390 Query: 410 -----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 E +RI P + + GFF V L++ +P+ Sbjct: 391 TMFPSGTDLPLERCMRIYPHLQD--------TGGFFIVVLQKKAEFKAKPE 433 >gi|294869080|ref|XP_002765752.1| protein nucleolar, putative [Perkinsus marinus ATCC 50983] gi|239865915|gb|EEQ98469.1| protein nucleolar, putative [Perkinsus marinus ATCC 50983] Length = 530 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 53/228 (23%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCSST 319 A D+ +R L + RL+ A ++ DA + + LFD VL D PC+S Sbjct: 60 LANDIEWKRANMLAHQVLRLNSPASGVVNFDASCFPVLWDEEGKQVLFDRVLCDVPCTSD 119 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++PD+ T + + Q ++LL+G+ KPGG VV+S CSL+ + E VV Sbjct: 120 GTMRKNPDIWREWKTGNSIAIHHRQFRILLRGLELAKPGGRVVYSTCSLNPIEDEAVVAA 179 Query: 380 VLRSSPIPVELVP-------------------------------LNSAYWKSIDMAMALS 408 L + V+LV + + Sbjct: 180 ALANFNGKVKLVAGPAVGNATYSIAAPRGEMYSGGRPGLSTWTVSPPGDAATHIDKYEDT 239 Query: 409 PEGWIR-----ITP----------DMLEKIDGVSSGMDGFFAVALRRL 441 P+ + + + P + GFF A ++ Sbjct: 240 PDQYKKKMLSSMWPPTDDSIKAQLHHCRRFFPHDINAGGFFVAAFEKV 287 >gi|304382974|ref|ZP_07365455.1| NOL1/NOP2/sun family protein [Prevotella marshii DSM 16973] gi|304335893|gb|EFM02142.1| NOL1/NOP2/sun family protein [Prevotella marshii DSM 16973] Length = 471 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 15/255 (5%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLC 249 +A + P G ++VQ+AS+ ++ + +++LDLC Sbjct: 52 DFDARVPWCSEGVYLRTRPPFTFDPLLHAGCYYVQEASSMFLHRILRQYVTSPVTMLDLC 111 Query: 250 AAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKK 305 AAPGGK+ +G+ + + + R L NL + + + Sbjct: 112 AAPGGKSTVARAALPAGSLLFCNEPVRSRAAVLTENLMKYGHPDVVVSCNSPVDYHRSGL 171 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 LFD +L D PCS G R+ + ++ + QR ++ + ++ GG+ ++S Sbjct: 172 LFDVILADVPCSGEGMFRKDESTMAEWSVQNVTACSRRQRDIVSETWHCLRGGGLFIYST 231 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 C+ + ++EE V ++R V V + + + + + + R P Sbjct: 232 CTFNTMENEENVAWIVRELGAEVLPVDVEPEWGITGSLLSGYAAPVY-RFLPGKTRGE-- 288 Query: 426 VSSGMDGFFAVALRR 440 G F LR+ Sbjct: 289 ------GLFVAVLRK 297 >gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus amyloliquefaciens FZB42] gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42] Length = 130 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I+ ++ +V + Sbjct: 1 MKRRT-AREKALQALFQIDVSDIAPNDAIEHALDGEKTD-------AFFEQLVYGVIEHQ 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR++V +++Y D+ ++ A+E AKR + Sbjct: 53 VQLDEMISGHLVNWKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELAKRF-GDD 111 Query: 119 HFAKLVNSILRR 130 AK VN +L Sbjct: 112 KAAKFVNGVLSN 123 >gi|296242154|ref|YP_003649641.1| ribosomal RNA methyltransferase NOP2 [Thermosphaera aggregans DSM 11486] gi|296094738|gb|ADG90689.1| ribosomal RNA methyltransferase NOP2 [Thermosphaera aggregans DSM 11486] Length = 340 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 107/271 (39%), Gaps = 24/271 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIV---SLPGFAEGVWWVQDASASIPVQLFGTLN 241 +E KL + ++ E PE +L + +D+S+ +PV L Sbjct: 76 SLEEKGFKLERLSWCDSAFKIIEAPEQPSPGATLEYLKGYYYLHRDSSSLLPVLLLTHEY 135 Query: 242 NLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 + +LD CAAPGGKT + V A D+ RRL L ++ R+ + + DA Sbjct: 136 SGDILDACAAPGGKTTFLAEKVYGKGIVYANDLVLRRLRSLIGHITRMRIENVVVTWSDA 195 Query: 299 FDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + +L+DAPCS G I P ++ + +LL I + Sbjct: 196 RKISKVFNRKIGRILLDAPCSGEGRISVDPGRRTRTSIYELALMVKREIELLDSLIDMLD 255 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------- 409 GI+ +S CS+ +++E VV K+L VE+VP ++ Sbjct: 256 DEGIIAYSTCSIAPEENEYVVSKILDKRK-DVEVVPPPLKLFEYSPWIKRYGGMVFHEEL 314 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +R+ P + G GF LRR Sbjct: 315 DKCVRLWPHV--------HGTFGFTTCLLRR 337 >gi|303390194|ref|XP_003073328.1| putative methyltransferase [Encephalitozoon intestinalis ATCC 50506] gi|303302474|gb|ADM11968.1| putative methyltransferase [Encephalitozoon intestinalis ATCC 50506] Length = 515 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 100/259 (38%), Gaps = 46/259 (17%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEK 278 G+ Q+ + IPV L + V+D+CAAPG KT Q IV+ V A D + +RL+ Sbjct: 93 GLIQRQEIVSMIPVSLMELKKDSKVIDMCAAPGSKTKQILDIVTNGLVIANDSNGKRLKV 152 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKK------LFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L + + I + DA + FD V D CSS GTIR+ P +L Sbjct: 153 LVSETSKKPNGSLIISKHDATIFPNVYEGGKLVRFDRVFCDVVCSSDGTIRKSPGILEGW 212 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-------SP 385 Q ++L +G + V GG+V +S CSL+ ++E VVQK+L Sbjct: 213 KLSRTTGLFNTQFRILKRGCNLVAEGGLVSYSTCSLNPIENECVVQKILLEGEFELVDFR 272 Query: 386 IPVELVPLN-----------------------SAYWKSIDMAMALSPEGWIRITPDMLEK 422 LVP + + E IR+ P + Sbjct: 273 NDPRLVPFPTCGDGTRLVFREGLRKWGTEDLIFKNPDYRPSDVDVGLEKCIRLYPHDQD- 331 Query: 423 IDGVSSGMDGFFAVALRRL 441 GFF LR+ Sbjct: 332 -------TGGFFIAILRKK 343 >gi|294878008|ref|XP_002768237.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239870434|gb|EER00955.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 723 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 125/420 (29%), Gaps = 69/420 (16%) Query: 91 AQILYLDVADYAVVDLAVEQAKRDKENR--------HFAKLVNSILRRVSREKIELLQRI 142 ++ Y ++ + K + + L + R E Q Sbjct: 61 WEMYYSNMPGLFKSREDFDAMKETMKTPLPVSIRINPSSPLWRDVANRCEELSKEPTQSA 120 Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT-- 200 G + ++ + + + Sbjct: 121 MGEDDDVDETVKKGMQSRALDWYFDGFKESTPRRCWQWDALGRKDVKKKAELKELKQWFV 180 Query: 201 --GGIRLKELPESIVSLPG----FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 E++ +P V D A+ + + +LS ++ Sbjct: 181 SQELRGCVARQEAVSMIPALFAKIDRPDLTVMDMCAAPGSKTCQMIESLSNTSSSSSSSS 240 Query: 255 KTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLF 307 + + + V A D+ +R L + RL+ A ++ DA + + LF Sbjct: 241 CSPEFSIPEGLVLANDIEWKRANMLAHQVLRLNSPASGVVNFDASCFPVLWDEEGKQVLF 300 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL D PC+S GT+R++PD+ T + + Q ++LL+G+ KPGG VV+S CS Sbjct: 301 DRVLCDVPCTSDGTMRKNPDIWREWKTGNSIAIHHRQFRILLRGLELAKPGGRVVYSTCS 360 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVP-------------------------------LNSA 396 L+ + E VV L + V+LV Sbjct: 361 LNPIEDEAVVAAALANFNGEVKLVAGPAVGHATYSIAAPRGEMYSGGRPGLSTWTVSPPG 420 Query: 397 YWKSIDMAMALSPEGWIR-----ITP----------DMLEKIDGVSSGMDGFFAVALRRL 441 + +P+ + + + P + GFF A ++ Sbjct: 421 DAATHIDKYEDTPDQYKKKMLSSMWPPTDESIKAQLHHCRRFFPHDINAGGFFVAAFEKV 480 >gi|300175418|emb|CBK20729.2| unnamed protein product [Blastocystis hominis] Length = 733 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 100/322 (31%), Gaps = 77/322 (23%) Query: 201 GGIRLKELPESIVSLPGFAE-----------GVWWVQDASASIPVQLFGTLNNLSVLDLC 249 G ++ + + + F + G Q+A + +P + VLD+C Sbjct: 112 GAWQIDLHRKKLRKVEAFKDLHKYMIALTLSGHIGRQEAVSMLPPMFLDVQKDDIVLDMC 171 Query: 250 AAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 AAPG KT Q V A D +R L + L + Y Sbjct: 172 AAPGSKTLQILEKLQKQDGHGIVVANDADSKRAYLLVHQVSHLKSGRIIVTTHLGQQYPF 231 Query: 304 --------------------------KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 FD +L D PCS GT+R+ PD+ + Sbjct: 232 LRSLPRGSVTPRFDEEPRVSADSTCQSGSFDRILCDVPCSGDGTLRKAPDLWKKWNIKYS 291 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + Q + L+G+ +K GG +V+S CSL+ + E VV +LR V +V + Y Sbjct: 292 LALHPLQIAITLRGLKLLKVGGRLVYSTCSLNPIEDEAVVMALLRRCGGAVRIVDVRDRY 351 Query: 398 WKSIDMA---------------------------------MALSPEGWIRITPDMLEKID 424 K A S E + + Sbjct: 352 PKLRRAAGLFQWQVVDGQNQPFPRFDAIPAENRRLYRESMFPPSEEACREAHLEWAMRFL 411 Query: 425 GVSSGMDGFFAVALRRLIQ-PK 445 GFF L + + PK Sbjct: 412 PHHQDTGGFFVCVLEKTAEIPK 433 >gi|329576773|gb|EGG58266.1| hypothetical protein HMPREF9520_01374 [Enterococcus faecalis TX1467] Length = 112 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 14/124 (11%) Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 +RR PD+ + + +D Q ++L +K GI+V+S C++ ++++EVV L Sbjct: 1 MRRKPDIKYHKTANDFQNLPKIQLEILESVAPTLKQWGIMVYSTCTITSEENQEVVAAFL 60 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 P ++ + + + A+ E + + P DGFF +R++ Sbjct: 61 AKHPEFEKIEIVANENVQ------AVVKEQELVLYPHQYM--------TDGFFICCMRKV 106 Query: 442 IQPK 445 + Sbjct: 107 SSNE 110 >gi|198450934|ref|XP_001358184.2| GA18969 [Drosophila pseudoobscura pseudoobscura] gi|198131259|gb|EAL27321.2| GA18969 [Drosophila pseudoobscura pseudoobscura] Length = 433 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 75/409 (18%), Positives = 133/409 (32%), Gaps = 49/409 (11%) Query: 59 FLPRIDAVLDFVLISS------------LPRKKYSLQQLLRVSVAQILYL------DVAD 100 + + AVL + L L +V V ++++ D Sbjct: 42 RVRSLQAVLKHYSDNRGAVDNAIEETSLLKDNPNLDSALAKVLVTELIFGRGQLNGDSKP 101 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160 V E+ ++ + K + + + EW ++ L Sbjct: 102 VQTVREYKERLEKAISGSNIQKKEPNPRYVRVNTNLLSIAEALEYLSSEEWRRKELPAEA 161 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 L A ++ T H ++ + + S Sbjct: 162 TYADFLTAIRAMEEDEFM---------TDLHVEGVLIFHPKWAHYWAGHDFVHS------ 206 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 + +Q+ + S+ +L +VLDLCAAPG KT + + ++ A++ S+ R Sbjct: 207 KKFILQNKATSLAAELLAPPVGSTVLDLCAAPGMKTLHMCNVMQNKGRIYAVEQSQERYR 266 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L + I DA + D +LVD CS G R +D Sbjct: 267 ALCDITNEAGCEIVTPILGDALTMDATRCPDVEYILVDPSCSGNGMQSRISVCDEQKDDK 326 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VP 392 + K A Q K+L +S + + CSL K+++E+VVQ+ L+ +P L Sbjct: 327 RLYKLAGLQIKILSHAMSAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKMLSCKKA 386 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + D A + + PD S DG F + Sbjct: 387 LRNKWQNVGDKEYAKIGKNCLYCLPD--------SDLTDGIFLALFEKK 427 >gi|225681882|gb|EEH20166.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Paracoccidioides brasiliensis Pb03] Length = 756 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ + DA Y K FD Sbjct: 124 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSIKLPSLPPPEGKPVRNRYLKFDR 183 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 184 ILADVPCSGDGTSRKNVNVWKDWNPSNALGLHTTQCRILTRALQMLKVGGRVVYSTCSMN 243 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRITPD------ 418 ++E V+ V+ P V ++ ++ + + + R + Sbjct: 244 PVENEAVIASVIDRCGGPSKVHIMDCSNELPTLKRFPGLKSWSVMDKQGRTWTNWKDVED 303 Query: 419 ----------------------------MLEKIDGVSSGMDGFFAVALRR----LIQPK 445 +I FF L + +P+ Sbjct: 304 AVSQGDETLSRMVEGMFSPSEEEGIDLSRCMRIYPHQQDTGAFFIAVLEKRSDIKARPE 362 >gi|119872179|ref|YP_930186.1| PUA domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673587|gb|ABL87843.1| PUA domain containing protein [Pyrobaculum islandicum DSM 4184] Length = 376 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 94/233 (40%), Gaps = 29/233 (12%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271 I LP + EG+ + Q A + + +DL AAPGGK L G ++ A+D Sbjct: 167 IRDLPEYKEGLLYSQSLPAIAVGHVAKRARASTAVDLNAAPGGKATHLAQIGLRIIAVDR 226 Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 S ++EKL+ + RL L D++ D+ P+ D LVD PC+ G P Sbjct: 227 SWPKIEKLKEEVKRLGLADRIDVVLHDSRYLDRDFPRLAADLALVDPPCTDIGV---RPK 283 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + + +Q + L +K V++S C+L ++E+V++KV Sbjct: 284 IYHKVTIEMAKTLSRYQIQFLKTA---LKIAPTVIYSTCTLTYIENEDVIRKV------G 334 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E V I PE R P + GFF LRR Sbjct: 335 AEPVDT----GLEIGAPGWGCPE-CRRFLPHI--------HNTPGFFIALLRR 374 >gi|195143743|ref|XP_002012857.1| GL23704 [Drosophila persimilis] gi|194101800|gb|EDW23843.1| GL23704 [Drosophila persimilis] Length = 433 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 75/409 (18%), Positives = 133/409 (32%), Gaps = 49/409 (11%) Query: 59 FLPRIDAVLDFVLISS------------LPRKKYSLQQLLRVSVAQILYL------DVAD 100 + + AVL + L L +V V ++++ D Sbjct: 42 RVRSLQAVLKHYSDNRGAVDNAIEETNLLKDNPNLDSALAKVLVTELIFGRGQLNGDSKP 101 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160 V E+ ++ + K + + + EW ++ L Sbjct: 102 VQTVREYKERLEKAISGSNIQKKEPNPRYVRVNTNLLSIAEALEYLSSEEWRRKELPAEA 161 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 L A ++ T H ++ + + S Sbjct: 162 TYADFLTAIRAMEEDEFM---------TDLHVEGVLIFHPKWAHYWAGHDFVHS------ 206 Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLE 277 + +Q+ + S+ +L +VLDLCAAPG KT + + ++ A++ S+ R Sbjct: 207 KKFILQNKATSLAAELLAPPVGSTVLDLCAAPGMKTLHMCNVMQNKGRIYAVEQSQERYR 266 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTD 335 L + I DA + D +LVD CS G R +D Sbjct: 267 ALCDITNEAGCEIVTPILGDALTMDATRCPDVEYILVDPSCSGNGMQSRISVCDEQKDDK 326 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VP 392 + K A Q K+L +S + + CSL K+++E+VVQ+ L+ +P L Sbjct: 327 RLYKLAGLQIKILSHAMSAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFKMLSCKKA 386 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + D A + + PD S DG F + Sbjct: 387 LRNKWQNVGDKEYAKIGKNCLYCLPD--------SDLTDGIFLALFEKK 427 >gi|326480404|gb|EGE04414.1| methyltransferase ncl1 [Trichophyton equinum CBS 127.97] Length = 827 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 79/211 (37%), Gaps = 33/211 (15%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310 A D +R L + RL+ + DA Y K FD + Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGHPAKNRYLKFDRI 299 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++ ++ + + + Q ++L + + +K GG VV+S CS++ Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359 Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALS---PEGWIRITPDMLEKIDG 425 ++E ++ V+ VE+V + + + + RI + E + Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCENQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419 Query: 426 VSS--------GMDGFFAVALRR----LIQP 444 V GFF L + ++P Sbjct: 420 VRKLNPAASRLDTGGFFITVLEKKREIKVKP 450 >gi|296418531|ref|XP_002838884.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634867|emb|CAZ83075.1| unnamed protein product [Tuber melanosporum] Length = 781 Score = 103 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 103/334 (30%), Gaps = 93/334 (27%) Query: 203 IRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L +I P F Q+A + IP + + VLD+CAA Sbjct: 124 WQLSVGKSTIRRCPPFKRFQNFLVAETTVGNISRQEAVSMIPPLVMDIQPHHVVLDMCAA 183 Query: 252 PGGKTAQLIVSGA--------------------------KVTALDVSKRRLEKLRCNLDR 285 PG KTAQ+I + V A D +R L R Sbjct: 184 PGSKTAQIIEAIHANEETHVRAAIQDQSIDDGSGGRPAGLVIANDADYKRSHMLIHQTKR 243 Query: 286 LHLYAEDIIEMDAFDYC-----------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 L+ + DA Y FD +L D PCS GT R++ +V + Sbjct: 244 LNSPNLIVTNHDATMYPSLLVKNEDGRKEYLKFDRILADVPCSGDGTARKNYNVWRDWNP 303 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP--------I 386 + Q ++L++G+ +K G +V+S CS++ ++E VV + Sbjct: 304 LGAIGLHLTQVRILVRGLQMLKVSGRIVYSTCSMNPIENEAVVAAAIDRCGGLGKVNILD 363 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI------------------RITPDMLE------- 421 + +P + +G RI P M Sbjct: 364 CSDRLPELKRRPGVKGGWRVMDKDGSWFSSYEQVDKADMREARLSRIVPSMFPSEDGKSD 423 Query: 422 ------------KIDGVSSGMDGFFAVALRRLIQ 443 ++ GFF L + + Sbjct: 424 EDESRVPLERCMRVYPHLQDTGGFFITVLEKRSE 457 >gi|157132828|ref|XP_001662658.1| williams-beuren syndrome critical region protein [Aedes aegypti] gi|108881621|gb|EAT45846.1| williams-beuren syndrome critical region protein [Aedes aegypti] Length = 620 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 86/439 (19%), Positives = 154/439 (35%), Gaps = 35/439 (7%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +S +L V+ +R ++ L+ E + L+ D ILV L +ID +L Sbjct: 15 RYASKILRRVVEERCNVKSLILEERHIRKGKGLAIMDLILV---------HLKQIDELLK 65 Query: 69 FV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L+ PR L ++L +A++++ D L V+ KR +E A + Sbjct: 66 RTELLVKEPRLNPWLAKVL---IAELIFGRG-DLTGESLPVQCVKRYQEELKEALGQLDV 121 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 + E +++ + RL G V + L + D E Sbjct: 122 APAKMLDFKEPRYVRINTNVLAQPGAIRLLQEEGWVLVEEEFEKYGDFLE-RVKKLGDSE 180 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 ML ++ + + +Q+ + IP L VLD Sbjct: 181 FIVDFHFKEMLVFPNSAKNYWARAME-----LKQKFVLQNKACIIPTYLLNPPKKSVVLD 235 Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 +CAAPG KT L + + ++ A++ R + L + + Sbjct: 236 MCAAPGLKTTHLANLMKNKGRIYAVERDANRYKLLCDYAADFGVIKAINDDCMLVGEDQA 295 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 + +L+D CS +G + R + D + + Q KLL ++ +V+S Sbjct: 296 PGVEYILLDPSCSGSGMVSR-LKLNEEYDKQRLYRLGGLQYKLLCHAMNAFPSAKRIVYS 354 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS+ +++E++VQ L+ +LV K + P + EK Sbjct: 355 TCSIFPEENEDIVQGALK-HNGHFKLVDAKERLGKEWHNVGSTD-------YPGIGEKCL 406 Query: 425 GVSSGMD---GFFAVALRR 440 S D G F R Sbjct: 407 YARSESDLTIGMFVAVFER 425 >gi|302791864|ref|XP_002977698.1| hypothetical protein SELMODRAFT_107682 [Selaginella moellendorffii] gi|300154401|gb|EFJ21036.1| hypothetical protein SELMODRAFT_107682 [Selaginella moellendorffii] Length = 425 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 27/289 (9%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL--PGFAEGVWWVQD 227 A + ++ L +K ++ L + + + + + E + + Sbjct: 113 KAALRAAFVRLMMKKNVTEIDGLLPPETRQIQSYIPRYVRVNTLQMTVDEALEKLEELGS 172 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLD 284 ++ IP + + VLD CA+PG KT L + +VTA ++ ++RL+ L+ + Sbjct: 173 KASCIPAHVLCPDLDWEVLDACASPGNKTVHLAALMKGKGRVTACELHRKRLQVLQDTVK 232 Query: 285 RLHLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDVLWTRDT------ 334 R + D P A+L+D CS +GT + D L Sbjct: 233 RAGANNIQVKHQDFLKLDPNASDYSKVRAILLDPSCSGSGTTVQRMDHLLPVANGQSFVF 292 Query: 335 ---DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 I + A FQ+ L +SF VV+S CS++++++E+V+Q VL + + Sbjct: 293 SVFQRIDRLASFQKAALCHALSFPAVE-RVVYSTCSVNQRENEDVIQSVLEHARSHKFKL 351 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W + + + +R D + DGFF R Sbjct: 352 GTVLPDWPHRGLPVFDGAQHLLRT--------DALRDKTDGFFVALFVR 392 >gi|297526564|ref|YP_003668588.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255480|gb|ADI31689.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 415 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 119/314 (37%), Gaps = 31/314 (9%) Query: 146 SIIPEWFKERLENFYGKERV-LAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGI 203 PE+ + L N ++ + + + ++ + +K E+ L + Sbjct: 114 HSYPEFLVKDLLNHMSEKELDKMLKKLNVRKRWLRINTLKTSYESAYKCLEETGIIYQRK 173 Query: 204 RLKELP--------ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + + I G QD +++ V+ + LD C+APG K Sbjct: 174 NFPDYMVYVEHPKWDPIGHNKCVKNGYVVPQDLASAYVVEALELDRDKYFLDACSAPGLK 233 Query: 256 T---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKKLFDAV 310 L + A+D+S +R+ + L RL + + +I D+ + ++FD Sbjct: 234 YSLAFMLTDNKLYGFAIDLSSKRMRTGQILLKRLGVDSSRTILINADSGNIKLSRVFDYA 293 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDI-VKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 LVDAPCS G++ P V + + Q ++L + + + VV++ CS+ Sbjct: 294 LVDAPCSGLGSVYSDPAVKLNTNRRSKLEQYHKKQYRILKNILRYAR---RVVYATCSIH 350 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 + EEV+++++ + E +N + +S R+ P + Sbjct: 351 PLEGEEVIERIV--NEGLAETNKINLPGLSTAYKGFNIS-NSTYRVLPHTMNSQ------ 401 Query: 430 MDGFFAVALR-RLI 442 GF+ L ++ Sbjct: 402 --GFYIAVLESKVA 413 >gi|281421193|ref|ZP_06252192.1| NOL1/NOP2/sun family protein [Prevotella copri DSM 18205] gi|281404728|gb|EFB35408.1| NOL1/NOP2/sun family protein [Prevotella copri DSM 18205] Length = 474 Score = 103 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 106/291 (36%), Gaps = 18/291 (6%) Query: 156 LENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSL 215 L +R+ +P I + + + R Sbjct: 15 LMGEKLYQRLEHAILEEEAPTSIRINPFKCKDADGE---PIPWCPETGRYLSTRPGFTFD 71 Query: 216 PGFAEGVWWVQDASASIPVQLF--GTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P G+++VQ+AS+ + +LDLCAAPGGK+ + G+ + + + Sbjct: 72 PLLHAGLYYVQEASSMFVDMAIRQFVKEPVMMLDLCAAPGGKSTAVRAALPEGSLLFSNE 131 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRHPDVL 329 + R + L N+ + + DY K FD +L D PCS G R+ + Sbjct: 132 PMRTRSQILAENVQKFGHPDMIVTNNYPRDYKKSKLQFDVILTDVPCSGEGMFRKDEGAI 191 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 T ++ QR+++ + +KPGGI+++S C+ + + EE V + V Sbjct: 192 GEWSTQNVNNCWQLQREIVSDIWNCLKPGGILIYSTCTFNAHEDEENVDWICEELGAEVM 251 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + W +I + + R P + G F L++ Sbjct: 252 ALEGVEDAW-NITRNLTGTDFPVYRFIPGVSRGE--------GLFMAILKK 293 >gi|145519744|ref|XP_001445733.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124413199|emb|CAK78336.1| unnamed protein product [Paramecium tetraurelia] Length = 776 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 114/328 (34%), Gaps = 48/328 (14%) Query: 115 KENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACIS 174 N++ +K N+ ++V + + + R E Sbjct: 4 HRNKNQSKYENAPQKKVKTNHWDQDNQQICVVQFENPIFRRFYEIQLPEITSEEFQIFWQ 63 Query: 175 PLYIDLTVKFDI-------ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW--- 224 L + L V F I E+ +L L + +E+ E I + + + W Sbjct: 64 SLSLPLPVTFRINPSQYKYESLIERLQDGSLIKDMVNEEEIVEPIREIKWYPNHLVWESK 123 Query: 225 -----------------------------VQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 Q+ + +P L VLD+CAAPG K Sbjct: 124 VPKKSLRKSAALTKLHQFIQKCNSTGLLTRQELVSMLPPLLLDPQPTDYVLDMCAAPGSK 183 Query: 256 TAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLF 307 T Q +V+ + A DV +R L L R+ + A Y + F Sbjct: 184 TCQLLEVVTKGLIVANDVDAKRAYMLSHQLSRMPTAQVMVTNYAAQFYPTLYINGQRLQF 243 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL D PC+ G R+ P D Q +L++ + K GG V++S CS Sbjct: 244 DKVLCDVPCTGDGAARKLPTRWVKWSARDGNVIHPLQLSILMRSLQLCKIGGYVMYSTCS 303 Query: 368 LDKQDSEEVVQKVLRSSP-IPVELVPLN 394 L+ + E VV +V R + ELV L+ Sbjct: 304 LNPIEDEAVVAEVFRRAGFDAFELVDLH 331 >gi|156937691|ref|YP_001435487.1| Fmu (Sun) domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566675|gb|ABU82080.1| Fmu (Sun) domain protein [Ignicoccus hospitalis KIN4/I] Length = 385 Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 34/236 (14%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269 L F +G+ + Q A A V+ V+D+ AAPGGK KV A Sbjct: 177 RELKSFEKGLIYPQSAPAVAAVRALEPEGL--VVDMNAAPGGKAFHAYELLRGKGKVIAF 234 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIE----MDAFDYCPKKLFDAVLVDAPCSSTGTIRRH 325 D+SK+R+ K+ + RL E + +D D V+VD PC++ G I + Sbjct: 235 DISKKRISKMMEEMRRLGHSFEVVRADSRYLDLDFPHLVGKADRVIVDPPCTAIGVIPKV 294 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 DV + +D++ + +Q++ + +K GG++++S C+L K ++E VV+ Sbjct: 295 WDV---KKDEDMINAFEYQKQFVKVAYKLLKKGGLMLYSTCTLTKTENERVVEFA---EE 348 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E+V ++ + K+ K+ G GFF L++ Sbjct: 349 MGFEVVEKDTPWGKTP-------------------VKVSPSVHGEPGFFIAILKKK 385 >gi|115445043|ref|NP_001046301.1| Os02g0217800 [Oryza sativa Japonica Group] gi|113535832|dbj|BAF08215.1| Os02g0217800 [Oryza sativa Japonica Group] Length = 501 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 91/449 (20%), Positives = 159/449 (35%), Gaps = 67/449 (14%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF--VL 71 +L V+R S S S R++ A+V TL++LP + VL VL Sbjct: 48 VLRRVLRGDASRRAA---GSIKSLVYSPSVRNKRATFALVCQTLKYLPILKEVLASTGVL 104 Query: 72 ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 S +++ + V+ IL+ + A V+ + K + A L +RR Sbjct: 105 TSKWKKQEELVF----VTAYDILFGQETAASGSVEQLIMLHK----DTIMAALEKMCIRR 156 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 R +L+ + + P + + T++ ++ Sbjct: 157 KVRSVEDLVSKKRTVKPKPRFLR-------------------------VNTLRTSTDSVI 191 Query: 191 HKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV-QDASASIPVQLFGTLNNLSVLDLC 249 +LN + + +L + + ++ + V+D C Sbjct: 192 EELNKIHKVDKDELVPDLLVLPPGTDLHNHHLVSEGKGKASCMVAVALCPEPGWKVIDAC 251 Query: 250 AAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL 306 AAPG KT L + +TA +++K R + L+ + R + I D D Sbjct: 252 AAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTIRRSGANNIETINGDFLDIDSNDP 311 Query: 307 F----DAVLVDAPCSSTGTIRRHPDVL---WTRDTDDIV-------KSACFQRKLLLQGI 352 A+L+D CS +G D L +R D K + FQRK L + Sbjct: 312 SYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGNQDDASTSSRIRKLSAFQRKALSHAL 371 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 SF VV+S CS+ + ++E+VV VL + + W+ + + E Sbjct: 372 SFPSVE-RVVYSTCSIHQAENEDVVSSVLPLASSLGFELATPFPQWRRRGLPVFEGSEHL 430 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R P G++GFF R Sbjct: 431 LRTDP---------EDGLEGFFISLFVRK 450 >gi|317401252|gb|EFV81894.1| ribosomal RNA small subunit methyltransferase [Achromobacter xylosoxidans C54] Length = 151 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FDAVL D PC+++G +RRHPD+ W R +D+ ++A Q ++L V PGG +++ Sbjct: 34 GRPFDAVLADVPCTASGIVRRHPDIRWLRRENDLRRTATLQTRILDALWQTVAPGGRLLY 93 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 CS+ + + L+ P L ++ P ++ Sbjct: 94 VTCSVFPIEGTRQALEFLQRHPDARRLEAPG-------------------QLLPVAVDAT 134 Query: 424 DGVSSGMDGFFAVALRR 440 DGFF + Sbjct: 135 PAAQH--DGFFYALFAK 149 >gi|303247304|ref|ZP_07333577.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ] gi|302491218|gb|EFL51107.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ] Length = 429 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 64/259 (24%), Positives = 102/259 (39%), Gaps = 14/259 (5%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + H+ RL + P + S G +QD S+ +P L V Sbjct: 37 LAATGHRGAPEPFSPCCRRLADEPTPLGSSLAARFGYIHIQDRSSMLPPLLLDPPAGARV 96 Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMDAFDY 301 LD+CAAPGGKT L V + S RL LR L R +L + D + Sbjct: 97 LDMCAAPGGKTGFLAQLVGPTGFVLGNEPSPDRLATLRQTLLRENLANTATCAQTDLSPF 156 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P+ F +L+D PCS GT+ ++P D + QRKLL + PGG + Sbjct: 157 FPEGAFTHILLDPPCSGWGTLDKNPQAARIWSGDKVAPLIALQRKLLETAARLLVPGGRL 216 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++S C+ + ++E+ + L P+ + + +S G +R+ Sbjct: 217 LYSTCTTNVVENEDQTRFALDHLPLAPLPLTPPEGFVFEAPHRDDVS--GVLRV------ 268 Query: 422 KIDGVSSGMDGFFAVALRR 440 D +S GF+ + Sbjct: 269 --DSRASAAQGFYMALYEK 285 >gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri A1501] gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501] gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri DSM 4166] Length = 161 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L SL + D+ F + D ++N R +D Sbjct: 26 ARSLAMQALYQWHMAGQSLNEIEAQFRVDNDFSGV---DGAYFHELLNGVARKKTEVDQA 82 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 + L L +LR+S +++ +DV V++ +E AK Sbjct: 83 IAPNLDRPLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAKVYGATDGHK 138 >gi|327543217|gb|EGF29651.1| RNA methylase, NOL1/NOP2/sun family [Rhodopirellula baltica WH47] Length = 507 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 116/305 (38%), Gaps = 35/305 (11%) Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 K+ + ++ A + V+ D + + + P ++ GF Sbjct: 45 PKDELERLAAAMSQRHANVMRVRRDRTDAFRFSRSDAATPNPMDVPWYPLALAIPDGFHA 104 Query: 221 GV--------WWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTA---QLIVSGAK 265 +++QDA + + + + V DLCAAPGGK + I Sbjct: 105 SRSIDFAAGDFYLQDAGSLLALAAAEAHTDSLSGQLVCDLCAAPGGKATGLLEAIGDNGF 164 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323 + A + + R+ L NL R I D K FD +L+DAPCS + Sbjct: 165 LLANEPIRSRVAPLAYNLSRTGSDRYAISSEDPDALAEKLPGVFDTILIDAPCSGQALLS 224 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R + + +A Q+++L ++PGG +V+S C+ ++E+ + ++R Sbjct: 225 RGRQSKGAVNESMVATNAARQQRILAAAHKLLRPGGTIVYSTCTFAVAENEDQIDWMIRE 284 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR--- 440 +E+ P ++ D L+ G+ R P E G FA L + Sbjct: 285 ----LEMQPFPASTLS--DYQSPLADCGY-RAWPHRDECA--------GAFAARLTKPII 329 Query: 441 LIQPK 445 + +P+ Sbjct: 330 VGEPE 334 >gi|156546966|ref|XP_001599497.1| PREDICTED: hypothetical protein [Nasonia vitripennis] Length = 459 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 92/238 (38%), Gaps = 20/238 (8%) Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRL 276 +G +Q+ + + ++ +VLD+CAAPG KT + + + V A++ K +L Sbjct: 224 KGYVLLQNLPSILCSRVLDPQPGETVLDMCAAPGNKTTHIAALMENKGVVVAIEKIKNKL 283 Query: 277 EKLRCNLDRLHLYAEDIIEMDAF--------------DYCPKKLFDAVLVDAPCSSTGTI 322 E+L N++ D+ K+ FD VL+D PCS+ G Sbjct: 284 ERLNSNIENFSATIVKAYCFDSTKAVCDAEEKSIFDGPPYSKESFDRVLLDGPCSALG-- 341 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 + P + + QRKL + ++PGG +V+S C++ ++E ++ L+ Sbjct: 342 -QRPQIRNPISVSQLRSYVPLQRKLFTSAVQLLRPGGTLVYSTCTITIAENEGIIAWALK 400 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P ++ + T + + GFF + Sbjct: 401 TFPNLELRSVREKLMSMKMEKFATVGYTIDGLTTEQSDKLCRFDENDTVGFFIACFIK 458 >gi|225713816|gb|ACO12754.1| methyltransferase NSUN5 [Lepeophtheirus salmonis] Length = 431 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 144/395 (36%), Gaps = 30/395 (7%) Query: 52 IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 +V + I +L + + L + + ++++ A Sbjct: 52 LVTECVAKRDEITELLKK--SKLFEEEPRFNKNLASILITELIWGKGKLPATSRPLEIML 109 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 KR K+ + +K + S++ + R A ++ F + L++F + + + Sbjct: 110 KRQKQLKALSKEL-----CFSQKVKIVKPRWARVNTFKISFDDALKHFVEMDGLNYLEYD 164 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASAS 231 + L +E + L + + + S + G +QD +++ Sbjct: 165 QDTKYQDFLEKVRLLEPYE---FMCDLHVDNLLVFHPKTAFYSHELYLNGSIILQDKAST 221 Query: 232 IPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHL 288 +P+Q V+D CAAPG KT Q+ V A++ + R++ L L+R + Sbjct: 222 LPIQALNVKEGSIVMDACAAPGNKTTQIASCVGLNGGVYAIERDEERIQILDQTLERAGI 281 Query: 289 YA--EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + + +D P D + S + + + R + K + FQ K Sbjct: 282 HKSLVKVCNIDFTTLNPDDSPDVEYIVLDPSCSSSGILSDVAIGNR----LSKLSAFQFK 337 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 +L + F + +S CS+ K ++EEV++ +++ P L W + + Sbjct: 338 MLEHALKFPNVS-KISYSTCSVHKIENEEVIEAIVKKHPHFKVQHVLKK--WPTRGLNEY 394 Query: 407 LSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++R + GFF L+R+ Sbjct: 395 PHGDKFVR--------ATFETDLCSGFFVAILKRI 421 >gi|195108007|ref|XP_001998584.1| GI24054 [Drosophila mojavensis] gi|193915178|gb|EDW14045.1| GI24054 [Drosophila mojavensis] Length = 433 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 71/444 (15%), Positives = 147/444 (33%), Gaps = 44/444 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF----LPRID 64 ++ +L + K+ S+ L+ E VR++ L+ ID Sbjct: 15 KATAKILKAAIEKQKSIKSLIFEEKH------------ARVRSL-QAVLKHYSDNRGAID 61 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L L +V V ++++ + + + + Sbjct: 62 NAIEE--TGLLKENPNLDSALAKVLVTELIFGR---GQLNGESKPVRTVRSYKEKLQQAI 116 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 + ++ ++ + + + + ++++ I + Sbjct: 117 SGSEQQKKEPNPRYVRINTNLLSVADALDYLYGEEWRRKQLDPDGTYADFLAAIRELEED 176 Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 + H ++ E + + + +Q+ + + +L + Sbjct: 177 EFLMDMHVEGVLIFHHKWSHYWASHEFVHA------KKFILQNKATCLAAELLAPPVGST 230 Query: 245 VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLDLCAAPG K ++ + ++ A++ SK R + L + I DA Sbjct: 231 VLDLCAAPGMKTLHICNVMHNKGRIYAVEQSKERYKALCDITNEAGCQIVTPILGDALTM 290 Query: 302 CPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 K D +LVD CS G R +D + K A Q K+L +S Sbjct: 291 DATKCPDVEYILVDPSCSGNGMQSRISVCDEQKDDKRLYKLAGLQIKILSHAMSAFPNVK 350 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIRIT 416 +++ CSL K+++E+VVQ+ L+ +P L L + + D + + Sbjct: 351 RILYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWQNVGDKEYVQIGKNCLYCL 410 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 PD DG F + Sbjct: 411 PDY--------DLTDGIFLAMFEK 426 >gi|221480789|gb|EEE19218.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma gondii GT1] Length = 613 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 33/251 (13%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + +LP Q+ + + + VLD+CAAPGGKT L + + Sbjct: 371 DLSTLPA----CLVAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLHLATLMKGHGLIV 426 Query: 268 ALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDA--------------FDYCPKKLFDAVLV 312 A++ SK R EKLR L H +I+ D+ FD VL Sbjct: 427 AVERSKTRAEKLRSFLSTSSHASIVEIVCGDSAKGTWQSTQLGMGSHGRDFIGYFDRVLA 486 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PC++ G R ++ +A +QR+ L G +K GG +V+S CS+ + + Sbjct: 487 DVPCTALGL--RPRIDFEGLTDRVVLAAAKYQREFLKSGCQLLKTGGTLVYSTCSVSRAE 544 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP---DMLEKIDGVSSG 429 +EE V LR P+ +E + + + R+ P + S Sbjct: 545 NEENVAWALRHLPLMLE------PAEPFVGTHTFENGDRGARLFPPGEAEKLQRFCPSGN 598 Query: 430 MDGFFAVALRR 440 GFF + Sbjct: 599 TIGFFIAKFLK 609 >gi|237845131|ref|XP_002371863.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49] gi|211969527|gb|EEB04723.1| NOL1/NOP2/sun family protein [Toxoplasma gondii ME49] gi|221501454|gb|EEE27230.1| PUA domain-containing, nucleolar protein, putative [Toxoplasma gondii VEG] Length = 613 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 33/251 (13%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + +LP Q+ + + + VLD+CAAPGGKT L + + Sbjct: 371 DLSTLPA----CLVAQNLPSIVVGHVLSPQPGERVLDMCAAPGGKTLHLATLMKGHGLIV 426 Query: 268 ALDVSKRRLEKLRCNLDRL-HLYAEDIIEMDA--------------FDYCPKKLFDAVLV 312 A++ SK R EKLR L H +I+ D+ FD VL Sbjct: 427 AVERSKTRAEKLRSFLSTSSHASIVEIVCGDSAKGTWQSTQLGMGSHGRDFIGYFDRVLA 486 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PC++ G R ++ +A +QR+ L G +K GG +V+S CS+ + + Sbjct: 487 DVPCTALGL--RPRIDFEGLTDRVVLAAAKYQREFLKSGCQLLKTGGTLVYSTCSVSRAE 544 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP---DMLEKIDGVSSG 429 +EE V LR P+ +E + + + R+ P + S Sbjct: 545 NEENVAWALRHLPLMLE------PAEPFVGTHTFENGDRGARLFPPGEAEKLQRFCPSGN 598 Query: 430 MDGFFAVALRR 440 GFF + Sbjct: 599 TIGFFIAKFLK 609 >gi|124027288|ref|YP_001012608.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] gi|123977982|gb|ABM80263.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM 5456] Length = 423 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 81/447 (18%), Positives = 152/447 (34%), Gaps = 44/447 (9%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 V + +L+ + K SL +++ + L+ A+ LR + L Sbjct: 7 AVCARILARIEAKLYSLRYIVEKMKPRVP--------RGLLNALCLGVLRNYRLLIRALR 58 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + R + ++ + ++ +V + + + Sbjct: 59 YCGYRGDVRGNARGWLPIVIA-YEAMF---RHDSVPAEKLRSLGVLGGET--IDCLRGLE 112 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---D 185 + + L+R+A + +P W E L + + + P I + Sbjct: 113 PKHVVSGLHGLERLAVLYSMPLWVVEELAKAEPPGGIEELLKSFQEPTPIWIRFNKRRLS 172 Query: 186 IETWAHKLNAVMLPTGGIRLKELPESI-----VSLPGFAEGVWWVQDASASIPVQLFGTL 240 E L A+ + + + + ++ +++VQD +A + L G Sbjct: 173 REQAIKMLEAIGISVKPDPVLDDSLEVIRVEPGAIERLDNRLFYVQDRAAMLASHLLG-K 231 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTAL--DVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 +V D +APG K A A+ +VS+RRL + L R + D E DA Sbjct: 232 FEGAVYDFFSAPGNKLAHTYWRSGPTYAVALEVSRRRLHDEQRLLQRQAVLLVDAAEADA 291 Query: 299 FDYCPKK-LFDAVLVDAPCSSTGTIRRHPDVLW---TRDTDDIVKSACFQRKLLLQGISF 354 + A++VD C+S G + P+ + + A Q L + Sbjct: 292 TRPPLRPGSGRAIIVDPDCTSMGRLGHSPETRLFLERAGRRIVERLAELQEAGLRAALRT 351 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 G VV+ C+L +++EEVV+KV VE K + + R Sbjct: 352 AARGAKVVYMTCTLTLRENEEVVRKV-------VEDGLAELVEAKPLIGVWSPFMRKTQR 404 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P M + G FA L R+ Sbjct: 405 VYPHMSKCT--------GGFAALLIRV 423 >gi|47156972|gb|AAT12350.1| putative methyltransferase-like protein [Antonospora locustae] Length = 455 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 108/331 (32%), Gaps = 73/331 (22%) Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE-GVWWVQDASASIPVQLFGT 239 + D + + L + T + +LP + G+ + Q+ +++P Sbjct: 17 MSEQDYQNFVESLERPLPRTFRSMGFCGEINTDNLPLLLDAGLVYAQEVVSALPCSFLQL 76 Query: 240 LNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 VLD+CAAPG KT Q+ + A D S R L NL + + DA Sbjct: 77 SPAHLVLDMCAAPGSKTTQMASQVRLLVANDSSASRCSVLISNLKKTPSTGVVVTGHDAR 136 Query: 300 DYC-------------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRK 346 + FD +L D PCSS GTIR++ L Q + Sbjct: 137 LFPMIRLAHTSFDSLGFPLYFDRILCDVPCSSDGTIRKNRKALDNW--HVNTMLFSLQYE 194 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY--------- 397 +L + +K G++V+S CSL ++E VVQK + E+V + + Sbjct: 195 ILQRAGQLLKADGLIVYSTCSLSPIENEAVVQKFCAEN--SFEIVDCSRIFNIEVRSWSN 252 Query: 398 ----WKSIDMAMALSPEGWIRI------------------------------------TP 417 ++ PE RI P Sbjct: 253 KCMSPNENRSGPSVLPENMYRITDDESVTAFCNRRVVFREGLTHWNPFVERTEHTADLFP 312 Query: 418 D------MLEKIDGVSSGMDGFFAVALRRLI 442 ++ GFF LRR + Sbjct: 313 QDCKALKHCLRVMPHDQDTGGFFITVLRRRV 343 >gi|225164363|ref|ZP_03726627.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] gi|224801016|gb|EEG19348.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] Length = 226 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 12/192 (6%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL 276 G ++Q+ + + L + +LD CAAPGGK + ++ ALD+ + Sbjct: 18 QSGDIFLQNPATRHAIDLLAPVAGELILDACAAPGGKSLAIADRMGRGRLVALDLPVQAR 77 Query: 277 EK----------LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHP 326 + +R+ + FDAVL+D PCS+TG +R Sbjct: 78 QLRLAENLSRAPAGVATERIQFNLLQPGSGAVLNKIAPHGFDAVLIDVPCSNTGVMRHRV 137 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 DV W DI + A Q +LL V+PGG +V+S CSL+ +++E VVQ L+ Sbjct: 138 DVKWRLQQSDIAQHARQQFELLEAVARHVRPGGRLVYSTCSLEAEENEAVVQTFLKKCGN 197 Query: 387 PVELVPLNSAYW 398 L Sbjct: 198 QFRLADSRQLRP 209 >gi|195388816|ref|XP_002053074.1| GJ23680 [Drosophila virilis] gi|194151160|gb|EDW66594.1| GJ23680 [Drosophila virilis] Length = 433 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 79/450 (17%), Positives = 147/450 (32%), Gaps = 56/450 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF----LPRID 64 ++ +L + K+ S+ L+ E VR++ L+ +D Sbjct: 15 KATAKILKAAIEKQKSIKSLIFEEKH------------ARVRSL-QAVLKHYSDNRGAVD 61 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD------VADYAVVDLAVEQAKRDKENR 118 ++ L L +V V ++++ V L E+ ++ Sbjct: 62 NAIEE--TGLLKDNPNLDSALAKVLVTELIFGRGELNGESRPVQTVRLYKERLQQAISGA 119 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 + K + + + EW +++L L ++ Sbjct: 120 EYQKKEPNPRYVRINTNLLSIADALDYLYGEEWRRKQLAADATYADFLVAIRTLEEDEFL 179 Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + V++ S + +Q+ + + +L Sbjct: 180 ----------MDIHVEGVLIFHSKWSHYW-----ASHDYVRSKKFILQNKATCLAAELLA 224 Query: 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 +VLD+CAAPG KT ++ + ++ A++ SK R + L + I Sbjct: 225 PPVGSTVLDMCAAPGMKTLHLCNVMQNQGRIYAVEQSKERYKALCDITNEAGCQIVTPIL 284 Query: 296 MDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGIS 353 DA K D VLVD CS G R +D + K A Q K+L +S Sbjct: 285 GDALTMDSTKCPDVEYVLVDPSCSGNGMQSRISVCDEQKDDKRLYKLAGLQIKILSHAMS 344 Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPE 410 +V+ CSL K+++E+VVQ+ L+ +P L L + + D + Sbjct: 345 AFPNVKRIVYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWQNVGDKEYVKIGK 404 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + PD DG F + Sbjct: 405 NCLYCLPDH--------DLTDGIFLAMFEK 426 >gi|310792266|gb|EFQ27793.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001] Length = 866 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 19/185 (10%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--------------PKKLFDAVLV 312 A D +R L L RL + DA Y FD +L Sbjct: 246 IANDADYKRGHMLVHQLKRLGSPNLLVTNHDATQYPSIKLPSDPATPNRPQYLKFDRILA 305 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT+R++ ++ + + Q ++LL+ ++ +K GG VV+S CS++ + Sbjct: 306 DVPCSGDGTLRKNMNLWKDWQPGNALGLHVTQVRILLRALAMLKVGGRVVYSTCSMNPVE 365 Query: 373 SEEVVQKVLRSS--PIPVELVPLNS---AYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 +E VV + + P VE+V +S ++ M + R+ E + Sbjct: 366 NESVVAAAIDRAGGPDKVEIVDCSSELQGLVRAPGMRKWQIMDKSGRLWSSQAEVDEYTK 425 Query: 428 SGMDG 432 S DG Sbjct: 426 SSTDG 430 >gi|258563306|ref|XP_002582398.1| hypothetical protein UREG_07171 [Uncinocarpus reesii 1704] gi|237907905|gb|EEP82306.1| hypothetical protein UREG_07171 [Uncinocarpus reesii 1704] Length = 861 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 57/234 (24%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ + DA Y + FD Sbjct: 235 IANDSDYKRAHMLIHQMKRLNSPNLLVTNHDATLYPSIRLPGSPTAAGKRAPNRYLKFDR 294 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L++ + +KPGG VV+S CS++ Sbjct: 295 ILADVPCSGDGTARKNVNVWKDWNPANGIGLFPTQNRILIRALQMLKPGGRVVYSTCSMN 354 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDM 403 ++E VV ++ P V+++ ++ WK ++ Sbjct: 355 PVENEAVVASAIKHCGGPEKVQIIDCSNELLGLVRSPGLTSWTVMDKQGRIWNAWKEVEE 414 Query: 404 AMALSPEGWIRITPDMLE--------------KIDGVSSGMDGFFAVALRRLIQ 443 + E R+ M ++ GFF L + + Sbjct: 415 KINNGDETVKRVVEGMFPPPSDDQSIDLTRCMRVYPHQQDTGGFFITVLEKRSE 468 >gi|126465627|ref|YP_001040736.1| Fmu (Sun) domain-containing protein [Staphylothermus marinus F1] gi|126014450|gb|ABN69828.1| Fmu (Sun) domain protein [Staphylothermus marinus F1] Length = 384 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 149/408 (36%), Gaps = 40/408 (9%) Query: 45 DQILVRAI--VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ-QLLRVSVAQILYLDVADY 101 D L+ ++ V +L +D +L LP K+ L+ + ++ +++ Sbjct: 6 DYGLIASLRKVYGSL-TYSLLDKIL-------LPPKRLYLRVNTMLITREELVERLKKRG 57 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 V + + +++ +K + G ++ R + F Sbjct: 58 INVKEDPYVEEAVFIELEGPNKIPVYDKKIIVDKYAAESIMIGANLYRPGIV-RFDRFKE 116 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 E V + + V D + K + I I L + G Sbjct: 117 NEYVNIQATNGRIIAVVRTLVSSDKLKYMKK----GIVGENIVSIYKAPPIRDLEEYDLG 172 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEK 278 +++ Q A + ++ + D+ AAPGGKT+ L+ ++ A + + ++ K Sbjct: 173 LFYPQSLPAMMVSRILDPQPGELIFDMNAAPGGKTSHLVQLSQGRSRIIAFERNVKKALK 232 Query: 279 LRCNLDRLHL-YAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 + L RL L I+ MD+ + D +L+D PC+ G P + Sbjct: 233 VYSTLKRLRLLRNVIILPMDSRYVHLDLNVSEKVDKILIDPPCTGLGV---RPKIDIDIR 289 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 +DIV + +QR+ L + + GI+V+S C+L +++EE + +R + +E + L Sbjct: 290 GEDIVVLSKYQRQFLNSASTILTRKGIIVYSTCTLTWEENEENIIYAVRK--LGLETIDL 347 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + + M GFF LRR Sbjct: 348 GKIPYADKIYYRDIVA-----------YRFSPLGYDMPGFFVAVLRRK 384 >gi|320167290|gb|EFW44189.1| tRNA and rRNA cytosine-C5-methylase [Capsaspora owczarzaki ATCC 30864] Length = 546 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 75/454 (16%), Positives = 150/454 (33%), Gaps = 46/454 (10%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 N ++ ++ + KR SL L D+ + A++ L++ ++ Sbjct: 46 TNVYFAAASVIDRLRDKRGSLKSLAFACAFH---------DKKRLFALICEALKYRTVVE 96 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +L + + K + V+V +L + KR + Sbjct: 97 ELLQ--VSGFTKKNKEIAPSVALVAVYDLLIGRGSI-----ECGGVIKRAVTE--SKGDL 147 Query: 125 NSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID----- 179 N+ L R+ R + I E + + + A + L Sbjct: 148 NAALVRMKIRAKVKDVRDLLPAAIREQDAIVIPRYVRVNTLKMSVAAAVQALQQQPGGFA 207 Query: 180 -LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + DI + + + + + GV +QD ++ P + Sbjct: 208 LVDRPADISALSGRSFCQDEHLKDLLVFPSGTDFHDHKLYTSGVLILQDKASCFPAHVLS 267 Query: 239 TLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 SV+D CAAPG KT+ + + V A D+ RR + ++ + + + + Sbjct: 268 PSIGESVIDGCAAPGNKTSHVAALVGLKGHVHAFDLDPRRFKTMQNAMRKFGASNVECMN 327 Query: 296 MDAFDYCPKKLFDA----VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF---QRKLL 348 + + P A +L+D CS +G + R + + Q + + Sbjct: 328 GNFLEIKPTDPKYAKVSAILLDPSCSGSGIVNRLDYLAAEATETQEQRLTALSDFQFQTV 387 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 ++F V +S CS+ +Q++E VV +VL ++P + L W + Sbjct: 388 SHAMTFSNVS-KVSYSTCSIHEQENEGVVARVLAANPAFEVVHALP--QWPHRGLDTHPF 444 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +R P +GFF +R Sbjct: 445 GSKCVRAGP---------EDHTNGFFVSLFQRRT 469 >gi|228471232|ref|ZP_04056045.1| tRNA and rRNA cytosine-C5-methylase [Porphyromonas uenonis 60-3] gi|228307047|gb|EEK16129.1| tRNA and rRNA cytosine-C5-methylase [Porphyromonas uenonis 60-3] Length = 461 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 130/313 (41%), Gaps = 31/313 (9%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 + +P K +L Y E I +A +P + L + AH + T Sbjct: 1 MQTPVPSELKAKLAQAYP-EHASRIVEALETPPSVSLRLNPARTLSAHPFAELEDGTIPW 59 Query: 204 ------RLKELPESIVSL-PGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAP 252 +L P + G ++VQDASA ++ L LDLCAAP Sbjct: 60 LPTELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWEQLGWHETPKLALDLCAAP 119 Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKL 306 GGK L+ + + + ++ +R + L N+ + + II + + Sbjct: 120 GGKSTLLRDLLPAETLLVSNEILPKRCKILVENMVKWCGADQMIITQEEPQRLTPWLQGF 179 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 D +LVDAPCS G +RR + + QR +L + + + P G+++++ C Sbjct: 180 CDLILVDAPCSGEGLMRRDEEARRMWSPQLVADCVTRQRSILQEAMRMLAPEGVLLYATC 239 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 +L++++++++VQ +L + P EL+ L+ + +A A + + + P ++ Sbjct: 240 TLNQEENDQMVQWLLDNYPC--ELIDLSHCAER---IAGACATSYGLHLWPGIVRGEGQ- 293 Query: 427 SSGMDGFFAVALR 439 + ALR Sbjct: 294 -------YLAALR 299 >gi|71031923|ref|XP_765603.1| hypothetical protein [Theileria parva strain Muguga] gi|68352560|gb|EAN33320.1| hypothetical protein, conserved [Theileria parva] Length = 667 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 77/410 (18%), Positives = 137/410 (33%), Gaps = 82/410 (20%) Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + R E F K + + + K + + S IP RL Sbjct: 47 NQRENGRTRFVEGTLFNKEFETYYKDQNICKEDEWETFEEYSRIPLPVSFRLNTS-SYLW 105 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWW 224 L DL ++ ++ L + ++K S+ FA+ + Sbjct: 106 TLTREKLKQMCDTEDLHLEPCVDYCLEYLKNEVDYNIFYQMKTSKSSLRKNEKFAQFHQF 165 Query: 225 VQDA-----------SASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----------- 262 + + + +PV N ++LD CAAPG K Q++ Sbjct: 166 LMNEDNRGSLCRQETVSMLPVLFLDPRPNENILDFCAAPGMKYLQIVDMVETRLKSQNLD 225 Query: 263 ----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-------FDAVL 311 + DVS+ R+ L +L + + I DA + FD +L Sbjct: 226 SLKNKGIIVGNDVSQTRVSTLAHHLKTIDSPSTAITNYDATRFPNLYNKNGQLILFDKIL 285 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ D+ + + + Q +L +GI +KPGGI+++S CSL+ Sbjct: 286 ADMPCSCDGTMRKSIDIWTSWKATNGLHLHKVQLTILKRGIELLKPGGILIYSTCSLNPL 345 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA----MALSPEGW--------------- 412 ++E + +S VEL+ L + + +P G Sbjct: 346 ENEAIASYC--ASLEDVELIDLEPIKGFKSEKGLLDWLVPNPNGGYFSDFSQVDDNMRER 403 Query: 413 -------------------IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +R+ P + GFF +R++ + Sbjct: 404 VKETMFKNSKWNEEMAKKVMRVLPHY--------NNTGGFFIFKIRKIPK 445 >gi|32476477|ref|NP_869471.1| Sun/nucleolar protein family protein- tRNA and rRNA cytosine-C5-methylase [Rhodopirellula baltica SH 1] gi|32447022|emb|CAD78928.1| Sun/nucleolar protein family protein-putative tRNA and rRNA cytosine-C5-methylase [Rhodopirellula baltica SH 1] Length = 507 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 109/297 (36%), Gaps = 32/297 (10%) Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 K+ ++ A + V+ D ++ I + P ++ GF Sbjct: 45 PKDEQERLAAAMSQRHANVMRVRRDRTDAFRFSHSDADSLNPIDVPWYPLALAIPDGFHA 104 Query: 221 GV--------WWVQDASASIPVQLFGTLNN----LSVLDLCAAPGGKTA---QLIVSGAK 265 +++QDA + + + + V DLCAAPGGK + I Sbjct: 105 SRSIDFAAGDFYLQDAGSLLALAAAEAHTDSLSGQLVCDLCAAPGGKATGLLEAIGDDGF 164 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIR 323 + A + + R+ L NL R I D K FD +L+DAPCS + Sbjct: 165 LLANEPIRSRVAPLAYNLSRTGSDRYAISSEDPDALAEKLPGVFDTILIDAPCSGQALLS 224 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 R + + +A Q+++L ++PGG +V+S C+ ++E+ + ++R Sbjct: 225 RGRQSKGAVNESMVATNAARQQRILAAAHKLLRPGGTIVYSTCTFAVAENEDQIDWMIR- 283 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EL D L+ G+ R+ P E G FA L + Sbjct: 284 -----ELEMQPFPVSTLSDYQSPLADCGY-RVWPHRDECA--------GAFAARLTK 326 >gi|326494776|dbj|BAJ94507.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 509 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 92/249 (36%), Gaps = 27/249 (10%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + P +G +Q ++ + V+D CAAPG KT L + + Sbjct: 221 DMHKHPLVTDGKVLLQGKASCMVAAALSPQPGWKVIDACAAPGNKTVHLAALMNGEGSII 280 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIR 323 A +++K R + L+ + + + + D + A+L+D CS +G Sbjct: 281 ACELNKERAKTLQHTVRKSGANNIETVIGDFLNIDSNDPSYAEVRAILLDPSCSGSGIST 340 Query: 324 RHPDVLWTRDTDDIV----------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 D L + D K + FQRK L +SF +V+S CS+ + ++ Sbjct: 341 ERLDHLLPSHSIDDQGDAGSSARIRKLSAFQRKALSHALSFPSVE-RLVYSTCSIHQAEN 399 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+VV VL + + W+ + + E +R P ++GF Sbjct: 400 EDVVSSVLPLASSLGFELSTPFPQWRRRGLPVFDGAEHLLRTDP---------EDDLEGF 450 Query: 434 FAVALRRLI 442 F R Sbjct: 451 FIALFVRKA 459 >gi|139948562|ref|NP_001077139.1| NOL1/NOP2/Sun domain family, member 6 [Bos taurus] gi|134024543|gb|AAI34425.1| NSUN6 protein [Bos taurus] Length = 408 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 23/197 (11%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--------------MDAFDYCPKKLFDA 309 +V ALD +++EK++ N L L + D + FD Sbjct: 260 GEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T +++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACTWTLKEVMSYQPLQRKLFTVAVELLKPGGVLVYSTCTVT 376 Query: 370 KQDSEEVVQKVLRSSPI 386 ++EE V L + P Sbjct: 377 LAENEEQVAWALEAFPG 393 >gi|325119346|emb|CBZ54899.1| putative NOL1/NOP2/sun family protein [Neospora caninum Liverpool] Length = 631 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 100/255 (39%), Gaps = 31/255 (12%) Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVS 262 + + LP Q+ + + + VLD+CAAPGGKT L + Sbjct: 384 MDRAVDLSRLP----PCLVAQNLPSIVVGHVLAPQPGERVLDMCAAPGGKTLHLATLMKG 439 Query: 263 GAKVTALDVSKRRLEKLRCNLDR-LHLYAEDIIEMDAFDYCPKKL--------------F 307 + A++ SK R +KLR L H +++ D+ + F Sbjct: 440 QGHIVAVERSKTRAQKLRSFLCSSPHASIVEVVCGDSAKGTWRSTHVGAEASPGRRLGNF 499 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D VL D PC++ G R ++ +A +QR+ L G +K GG +V+S CS Sbjct: 500 DRVLADVPCTALGL--RPRLDFDGLTDRVVLSAAEYQREFLQSGCQLLKTGGTLVYSTCS 557 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVP--LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 + + ++EE V L P+ +E + ++S D L P G + Sbjct: 558 ISRAENEENVVWALGHLPLVLEPAEPFVGPHTFQSGDALAPLLPPGE-----AAKLQRFC 612 Query: 426 VSSGMDGFFAVALRR 440 S GFF R+ Sbjct: 613 PSGNTIGFFIAKFRK 627 >gi|158442022|gb|ABW38756.1| Sun/nucleolar family protein [Giardia intestinalis] Length = 742 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 13/206 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G Q+A + IP +VLD+CAAPG KT Q + + A D + Sbjct: 157 HEAGFIVRQEAVSMIPPIFLQARAGEAVLDVCAAPGSKTLQLLEDVGPTGLLMANDADLK 216 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R L N + + + I DA Y LFD +L D PCS GT+R+ PD+ Sbjct: 217 RCYVLVHNTITVSMPSLVITNCDASRYPSLPGGMLFDKILADVPCSGDGTLRKAPDIWPR 276 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + Q ++LL+ + +K G +V+S CSL+ ++E VV L+ +E++ Sbjct: 277 WSPHGGLSLHPLQLRILLRSLQLLKVEGTLVYSTCSLNPIENEAVVASALQICQGSLEVL 336 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITP 417 + I + P Sbjct: 337 DASHIAPSLIRSP-------GLTTWP 355 >gi|85105962|ref|XP_962072.1| hypothetical protein NCU05301 [Neurospora crassa OR74A] gi|28923666|gb|EAA32836.1| hypothetical protein NCU05301 [Neurospora crassa OR74A] Length = 855 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 61/242 (25%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVL 311 + A D +R L L RL + DA Y FD +L Sbjct: 239 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPSLRIPNPEDPSKPNYLKFDRIL 298 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R++ ++ + Q ++L++ + +KPGG +V+S CS++ Sbjct: 299 ADVPCSGDGTLRKNVNLWKDWAPAAALGLHLTQVRILVRALQMLKPGGRMVYSTCSMNPV 358 Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT---------- 416 ++E VV + P +E+V + M + R+ Sbjct: 359 ENESVVAAAIERCGGPDKIEIVDCADQLPLLQRKPGMRKWKIMDKSARVWNSWQEVEDHA 418 Query: 417 --------PDML---------------------EKIDGVSSGMDGFFAVALRR----LIQ 443 P L ++ GFF L++ + Sbjct: 419 KSTEDGITPSRLVESMFPRPEGSICADLPLERCMRVYAHQQDTGGFFITVLQKKAEFKAK 478 Query: 444 PK 445 P+ Sbjct: 479 PE 480 >gi|145590277|ref|YP_001152279.1| PUA domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282045|gb|ABP49627.1| PUA domain containing protein [Pyrobaculum arsenaticum DSM 13514] Length = 377 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 28/231 (12%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271 + +LP +AEG+++ Q A + SV+DL AAPGGK L G V A+D Sbjct: 167 LRNLPEYAEGLFYSQSLPAIAVGHIARKFAQRSVVDLNAAPGGKATHLAQYGIHVIAVDR 226 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 S ++ KL+ ++RL L + D++ D+ PK D LVD PC+ G P + Sbjct: 227 SSPKISKLKYEVERLGLNSVDVLLHDSRYLDRDFPKLKADVALVDPPCTDLGV---RPKI 283 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + +Q + L + V++S C+ ++EEV++K Sbjct: 284 YQKVTYSTAKTLSKYQVQFLKTALKL---ADYVIYSTCTTTAIENEEVIKK------SGA 334 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 E+V SI E R P + GFF L+ Sbjct: 335 EIVDPEI----SIGAPGWECAE-CRRFLPHI--------HNTPGFFIAVLK 372 >gi|158442008|gb|ABW38744.1| Sun/nucleolar family protein [Giardia intestinalis] gi|158442015|gb|ABW38750.1| Sun/nucleolar family protein [Giardia intestinalis] gi|158442029|gb|ABW38762.1| Sun/nucleolar family protein [Giardia intestinalis] gi|158442036|gb|ABW38768.1| Sun/nucleolar family protein [Giardia intestinalis] gi|158442043|gb|ABW38774.1| Sun/nucleolar family protein [Giardia intestinalis] Length = 742 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 13/206 (6%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKR 274 G Q+A + IP +VLD+CAAPG KT Q + + A D + Sbjct: 157 HEAGFIVRQEAVSMIPPIFLQARAGEAVLDVCAAPGSKTLQLLEDVGPTGLLMANDADLK 216 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 R L N + + + I DA Y LFD +L D PCS GT+R+ PD+ Sbjct: 217 RCYVLVHNTITVSMPSLVITNCDASRYPSLPGGMLFDKILADVPCSGDGTLRKAPDIWPR 276 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + Q ++LL+ + +K G +V+S CSL+ ++E VV L+ +E++ Sbjct: 277 WSPHGGLSLHPLQLRILLRSLQLLKVEGTLVYSTCSLNPIENEAVVASALQICQGSLEVL 336 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITP 417 + I + P Sbjct: 337 DASHIAPSLIRSP-------GLTTWP 355 >gi|303244915|ref|ZP_07331241.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus okinawensis IH1] gi|302484732|gb|EFL47670.1| RNA methylase, NOL1/NOP2/sun family [Methanothermococcus okinawensis IH1] Length = 277 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 65/262 (24%), Positives = 121/262 (46%), Gaps = 21/262 (8%) Query: 185 DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 D ++K P S+ + P + G +++Q S++IP + N Sbjct: 32 DRLKNKEVKLEDTFLDYMFKVKGAPFSMGATPEYLFGYYYLQSISSTIPALVLNPYENDV 91 Query: 245 VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 VLD+C+APGGKT L + + + A +++++R+ L+ N+ R+ + ++ MDA Sbjct: 92 VLDMCSAPGGKTTHLSQLMNNKGVIIANEINRKRMRSLKSNIYRMGIVNTILLNMDALRL 151 Query: 302 CPKKL-FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD +L+DAPC+ ++ V DI A Q+ +L GI +K GG Sbjct: 152 KKFNMLFDKILLDAPCTGNPIKDKNRVV----SKRDIRYCALRQKNMLNVGIDMLKEGGE 207 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDM 419 +V+S CS + +++EEV++ +L + VEL+ + + + G +++ P Sbjct: 208 IVYSTCSPEIEENEEVIEYILNTR-RDVELIDIGEFKDNLKGINVIDGELNGTLKVIPPD 266 Query: 420 LEKIDGVSSGMDGFFAVALRRL 441 FF LR++ Sbjct: 267 EP-----------FFIAKLRKI 277 >gi|325090292|gb|EGC43602.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Ajellomyces capsulatus H88] Length = 853 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ I DA Y K FD Sbjct: 287 IANDNDYKRAHLLIHQMKRLNSPNLIITNHDATMYPSIKLPSLPSPEGKPIRNRYLKFDR 346 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 347 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQYRILTRALQMLKVGGRVVYSTCSMN 406 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY---------------------WKSIDMAMA 406 ++E V+ V+ P V ++ ++ W + Sbjct: 407 PVENEAVIASVIDRCGGPSKVHIMDCSNELSAMKRSPGLTTWTVMDKQGRIWANWKDVEE 466 Query: 407 LSPEGWIRI-------TP---------DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 EG + + P ++ FF L + +P+ Sbjct: 467 AVSEGDVTLNRIVEGMFPPAEEEGIDLSRCMRVYPHQQDTGAFFIAVLEKKSDIKARPE 525 >gi|289618216|emb|CBI54940.1| unnamed protein product [Sordaria macrospora] Length = 862 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 61/242 (25%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVL 311 + A D +R L L RL + DA Y FD +L Sbjct: 241 MLIANDADYKRSHMLIHQLKRLSSPNMIVTNHDATMYPSLRIPNPEDPTKPNYLKFDRIL 300 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R++ ++ + Q ++L++ + +KPGG +V+S CS++ Sbjct: 301 ADVPCSGDGTLRKNVNLWKDWAPAAALGLHLTQVRILVRALQMLKPGGRMVYSTCSMNPV 360 Query: 372 DSEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDMAM 405 ++E VV + P +E+V W+ I+ Sbjct: 361 ENESVVAAAIERCGGPDKIEIVDCADQLPLLQRKPGMRKWQIMDKTGKVWNSWQEIEEHT 420 Query: 406 ALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAVALRR----LIQ 443 + +G + + ++ GFF L++ + Sbjct: 421 KSTADGVAPARLVESMFPRPADSICADLPLERCMRVYAHQQDTGGFFITVLQKKAEFKAK 480 Query: 444 PK 445 P+ Sbjct: 481 PE 482 >gi|213621077|ref|ZP_03373860.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 180 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 77/181 (42%), Gaps = 6/181 (3%) Query: 38 FRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD 97 + ++ +D+ L++ + LR L +++ +++ ++ + K+ ++ L+ V Q+LY Sbjct: 1 QQKVADKDKALLQELCFGVLRTLSQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTR 60 Query: 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG---ISIIPEWFKE 154 V +A + VE A K + L+N +LR+ R++ LL A + P W + Sbjct: 61 VPPHAALAETVEGAVSIKRPQ-LKGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVK 119 Query: 155 RLENFYGKERVLAIS-DACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 RL+N Y + I + P+++ + + W L + + Sbjct: 120 RLQNAYPTQWQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRL 179 Query: 213 V 213 Sbjct: 180 E 180 >gi|221113519|ref|XP_002168650.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 149 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 7/140 (5%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-KKLFDAVLVDAPCSSTGTIRRH 325 A D RL+ L N+ RL + + D + FD VL+DAPCS TG I + Sbjct: 10 VANDAKAERLKSLIGNIHRLGITNTIVCNYDGRSFPKVMGGFDRVLLDAPCSGTGVISKD 69 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFV----KPGGIVVFSNCSLDKQDSEEVVQKVL 381 V + DI + + Q++LLL I V K GG +V+S CS+ +++E VV L Sbjct: 70 EQVKTNKSEKDIQRCSHVQKELLLAAIDSVDAKSKTGGYIVYSTCSIMVEENEWVVDYAL 129 Query: 382 RSSPIPVELVPLNSAYWKSI 401 V+LVP + K Sbjct: 130 SRR--NVKLVPTGIDFGKEG 147 >gi|239905251|ref|YP_002951990.1| hypothetical protein DMR_06130 [Desulfovibrio magneticus RS-1] gi|239795115|dbj|BAH74104.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 423 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 64/273 (23%), Positives = 100/273 (36%), Gaps = 21/273 (7%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232 + + + L A + + P G +QD S+ + Sbjct: 21 VCEAGERDLVEAFLGATGHVAEAEPFSPWCRRVTAEPTALGASLAARFGYIHIQDRSSML 80 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 P L VLD+CAAPGGKT L V + S RL LR L R L Sbjct: 81 PPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLGNEPSPDRLATLRQTLFRESLA 140 Query: 290 AEDIIE-MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 D P F +L+D PCS GT+ ++P D + QRKLL Sbjct: 141 NTATCSFADLSPQLPAGSFTHILLDPPCSGWGTLDKNPQAAKIWAGDKVAPLVALQRKLL 200 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + + PGG V++S C+ + ++E+ + L P + +PL + + Sbjct: 201 ATAAALLAPGGRVLYSTCTTNVAENEDQTRFALDELP--LRQIPLAAPAGFVFEAPHRGD 258 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 G +R+ D +S GF+ ++ Sbjct: 259 VSGVLRV--------DSAASAAQGFYLALFEKV 283 >gi|322505328|emb|CBZ14768.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 634 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 100/271 (36%), Gaps = 52/271 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS-------GAKVTALDVSK 273 G Q+ + +P L + VLD+CAAPG KT+Q++ V A DV+ Sbjct: 130 GYLTRQETVSMLPPLLLQVEPGMRVLDMCAAPGSKTSQILEFLLSGDAERGVVVANDVNV 189 Query: 274 RRLEKLRCNLDRL-HLY-AEDIIEMDAFDYC---PKKLFDAVLVDAPCSSTGTIRRHPDV 328 RL+ L +R + I DA + P + FD VL D CS GT+R+ D+ Sbjct: 190 SRLDVLHHQTNRAAGAHLHVIITNADATRFPLLPPAERFDRVLCDVMCSGDGTLRKSIDM 249 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D Q +LL+G++ K GGIVV+S CSL+ + E VV L + Sbjct: 250 WPRWDALQGANLHHSQILVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309 Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420 EL+ MA + + P M Sbjct: 310 ELMDPTPLLPGLCASPGMTSWTVTTRDLTTVLRTHEDAKTFMMAQTARRTFQYAPSMFAN 369 Query: 421 ------------EKIDGVSSGMDGFFAVALR 439 +I + GFF ALR Sbjct: 370 TELLVEQHIERTRRILPHAQDTGGFFVAALR 400 >gi|225560282|gb|EEH08564.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Ajellomyces capsulatus G186AR] Length = 865 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ I DA Y K FD Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIITNHDATMYPSIKLPSLPSPEGKPIRNRYLKFDR 296 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQYRILTRALQMLKVGGRVVYSTCSMN 356 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAY---------------------WKSIDMAMA 406 ++E V+ V+ P V ++ ++ W + Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELSAMKRSPGLTTWTVMDKQGRIWANWKDVEE 416 Query: 407 LSPEGWIRI-------TP---------DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 EG + + P ++ FF L + +P+ Sbjct: 417 AVSEGDVTLNRIVEGMFPPAEEEGIDLSRCMRVYPHQQDTGAFFIAVLEKKSDIKARPE 475 >gi|296481451|gb|DAA23566.1| NOL1/NOP2/Sun domain family, member 6 [Bos taurus] Length = 408 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 23/197 (11%) Query: 210 ESIVSLPGFAE---GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSG 263 E + P F ++Q+ +++ + +LDLCAAPGGKT + + Sbjct: 200 EPVYLSPSFDNVLPSYLFLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQ 259 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE--------------MDAFDYCPKKLFDA 309 +V ALD +++EK++ N L L + D + FD Sbjct: 260 GEVIALDKISKKVEKIKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGEPPFLPESFDR 319 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L+DAPCS G + P++ T +++ QRKL + +KPGG++V+S C++ Sbjct: 320 ILLDAPCSGMG---QRPNMACTWTLKEVMSYQPLQRKLFTVAVELLKPGGMLVYSTCTVT 376 Query: 370 KQDSEEVVQKVLRSSPI 386 ++EE V L + P Sbjct: 377 LAENEEQVAWALEAFPG 393 >gi|227872609|ref|ZP_03990944.1| possible tRNA/rRNA methyltransferase [Oribacterium sinus F0268] gi|227841549|gb|EEJ51844.1| possible tRNA/rRNA methyltransferase [Oribacterium sinus F0268] Length = 486 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 100/245 (40%), Gaps = 18/245 (7%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 P++ E+ + + E + + L ++ + L A L+ + Sbjct: 54 PDFPLEKWKENWKLEELKSE----------SLKLENSKNEYGLAL-AREYLCDEEYLQSI 102 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----LIVSG 263 I G++++QD SA V LDLCA+PGGK+ Q G Sbjct: 103 GVQIGHDAYHEAGLYYIQDPSAMSVVPYMEIRPFDRCLDLCASPGGKSLQIADRLKTEEG 162 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 + + + R + L N++R+ + + + F +LVDAPCS G Sbjct: 163 GILLSNEFIMERAKNLSKNVERMGYSHVAVSSCSAEELEAQFPAFFSRILVDAPCSGEGM 222 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 R++ + + + + + A QR +L + ++ GGI+ +S C+ ++++E + + +L Sbjct: 223 FRKNLEAIADWSLEKVSQCAGLQRDILGHALGMLREGGILAYSTCTFSEEENEGMREWIL 282 Query: 382 RSSPI 386 Sbjct: 283 EKHSE 287 >gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus 1942] gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus 1942] Length = 131 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I+ ++ D +V + Sbjct: 1 MKRRT-AREKALQALFQIDVSDIAPNEAIEHALDDQKTD-------PFFEELVYGVIDHQ 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR++V +++Y D+ ++ A+E AKR + Sbjct: 53 VQLDEMISKHLVNWKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELAKRF-GDD 111 Query: 119 HFAKLVNSILRR 130 K VN +L Sbjct: 112 KATKFVNGVLSN 123 >gi|324507264|gb|ADY43083.1| tRNA (cytosine-5-)-methyltransferase NSUN2 [Ascaris suum] Length = 524 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 73/225 (32%), Gaps = 59/225 (26%) Query: 267 TALDVSKRRLEKLRCNL-DRLHLYAEDIIEMDAFDYC---------PKKLFDAVLVDAPC 316 A DV R L R+ +I DA + LFD +L D C Sbjct: 19 VANDVDNSRCYLLVRQALKRMPTSNCVVINEDAAFMPTFILNKDAPERVLFDRILCDVIC 78 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GT R++P++ + + Q + + + + G++V+S CSL+ + E V Sbjct: 79 SGDGTFRKNPEMWRSWSPQKAIGLHKLQANIARRCLQLLAVDGLMVYSTCSLNPIEDEAV 138 Query: 377 VQKVLRSSPIPVELVPLNSA---------------------------------------- 396 + ++LR +ELV ++ Sbjct: 139 IAEMLRFGNGSIELVDVSDRLPQLKRSPGVSSWKVFDKDMTEYKSPDEVPEATKKSLVPS 198 Query: 397 -YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + E RI P M GFF LR+ Sbjct: 199 MFPPTDEEKQTFHLERCFRILPHMQ--------NTGGFFVAVLRK 235 >gi|256827223|ref|YP_003151182.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641] gi|256583366|gb|ACU94500.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641] Length = 500 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 51/445 (11%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 ++ +D +AF R + N LR I A Sbjct: 87 YEIIFLNKDAYVAVDQGVELAAFVQ------PRARRLANAVLRR---IMAARKSFPFGDP 137 Query: 76 PRKKYSLQQL----LRVS---VAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 +L +L L ++ +A++ + + + E A +I Sbjct: 138 QTDDAALARLYGFPLWMAQMFIAEM--GRTSAEQFMAASNEPASVYFGVNALCTSDAAIE 195 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 +REKI L + E +R+ + + S + D E+ Sbjct: 196 NAFTREKITLKPVTLPVVSAGESSAQRMPSTHRAPTTQTASSLHGAFAT-HKEFSGDTES 254 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL-D 247 A + V+ F +G V DA+A L + + Sbjct: 255 SARTVTISGCFEAPHASTVTSH--VARRAFDQGQLLVSDAAAQAVALLALPDVAPTSFLE 312 Query: 248 LCAAPGGKT-------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + + G KT + + +T +D + ++ +R + + D Sbjct: 313 VGSGRGTKTILLQSNAYRRFGTQMDLTCVDDHEFKMNVASSRAERYGAHISHPLVADGRT 372 Query: 301 YCPKKL---FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 P + F A LVDAPCS GT+RRHP++ W DI A + L+ V P Sbjct: 373 LSPARFNAGFAAALVDAPCSGLGTLRRHPEIRWRLAPRDIAALAELELDLITAAARLVVP 432 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRS-SPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G + ++ C++ ++E V+++ L S + +VP + L+ G Sbjct: 433 FGQLTYATCTVSAAENEGVIKRFLASDTGKQWRIVPTPVGGASKLFFKTTLTAGGC---- 488 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 D FA LRR+ Sbjct: 489 --------------DAHFACRLRRI 499 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 10/178 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ + ++ + LLD G S L+ D+ R +V + + +D V Sbjct: 7 ARRLAVEIGRDARERKAFASDLLDARLGKS---GLNAADRAFTRVLVLGVVATVGTLDEV 63 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA------KRDKENRHF 120 + L + L+ LRVS +I++L+ Y VD VE A R N Sbjct: 64 IGRCLDRAGD-VGLQLRDALRVSTYEIIFLNKDAYVAVDQGVELAAFVQPRARRLANAVL 122 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 +++ + + +A + P W + G+ A P + Sbjct: 123 RRIMAARKSFPFGDPQTDDAALARLYGFPLWMAQMFIAEMGRTSAEQFMAASNEPASV 180 >gi|303233259|ref|ZP_07319931.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4] gi|302480649|gb|EFL43737.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4] Length = 557 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 77/516 (14%), Positives = 146/516 (28%), Gaps = 82/516 (15%) Query: 6 NARLVSSHLLSCVM------RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 AR + LL + + D+ ++ D+ + ++ Sbjct: 38 PARRSAYALLVQYDPLTTTAASSLPARYIKDILRSSKRLADVTPADRAFAEFLCMGSVGA 97 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR------ 113 + VL + L LL ++ ++LY++ YAV A+ Sbjct: 98 YRYLCDVLSGYCKR-FSHLEKKLHVLLILASFELLYMEHEHYAVCSQYAALARSIQPRYV 156 Query: 114 --------------------------------DKENRHFAKLVNS--ILRRVSREKIELL 139 + + +S EL+ Sbjct: 157 GLVSGVLHALIREELPRMNKARDTLSAAYVSLQQGDAGADYACDSGVCDSDTITATDELV 216 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199 A +S +P + + G+ +L + + + L I V + ++ + Sbjct: 217 DAAARVSALPTFMLSAIAKARGRAFMLRYAASMRASLPIFYIVNPYLAPARQGVSKDDVC 276 Query: 200 TGG---IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 + L + +G D +A + + + VL++ A G KT Sbjct: 277 INEQFGMYLVCGAARGHIMRAVEQGSIVASDIAAQLICAVIAYTPHEHVLEIGAGNGTKT 336 Query: 257 AQLIVSGA-------KVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKL 306 D+ +L L+ + + + Sbjct: 337 LVSEYIAHVLKKPPLLHAVCDIVPAKLRTLQARFTKAAIPTTLEIVHADAALQAKPASTT 396 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWT-----RDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +D V +DAPCS TIRRH D+ D D+ Q +LL + V G + Sbjct: 397 YDCVFLDAPCSGISTIRRHSDIALRTTPASIDPDNSASLPAVQLQLLREASRQVTANGSL 456 Query: 362 VFSNCSLDKQDSEEVVQKVLR-SSPIPVELVPLNSAYWKS----------------IDMA 404 +S CS+ + ++VV L E AY + + + Sbjct: 457 YYSTCSMLACEHDDVVAAFLASREGAGFERAAFPIAYLQLVRDTLEQVYIKAASVCPETS 516 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 +S + I D + G D L R Sbjct: 517 RWISKDACITFPQDDTLLVQPYPYGPDAHMLTRLVR 552 >gi|299141412|ref|ZP_07034549.1| NOL1/NOP2/sun family protein [Prevotella oris C735] gi|298577372|gb|EFI49241.1| NOL1/NOP2/sun family protein [Prevotella oris C735] Length = 305 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 12/186 (6%) Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD-AFDYCPKKLFDAVLVDAPCSS 318 + +G+ + + + ++R L N+ + + + K FD +L D PCS Sbjct: 1 MPAGSLLFSNEPIRQRANILNENVLKFGVPDIIVTNNYARDYQQSKLQFDVILTDVPCSG 60 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R+ + + + A QR+++ S + PGG++++S C+ + + EE V Sbjct: 61 EGMFRKDAGAIDDWSMKKVEECARLQREIVSDIWSCLNPGGLLIYSTCTFNAHEDEENVA 120 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + +P A+ M + R P G F L Sbjct: 121 WIAKELGADFIEIPTEKAW---NIMGSLIDKNPVYRFVPGKTRGE--------GLFMAVL 169 Query: 439 RRLIQP 444 R+ +P Sbjct: 170 RKYGEP 175 >gi|4544451|gb|AAD22359.1| unknown protein [Arabidopsis thaliana] Length = 837 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 31/213 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271 Q+A + +P + VLD+CAAPG KT QL+ V A DV Sbjct: 167 ITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDV 226 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------------LFDAVL 311 +R L R+ + + + + FD VL Sbjct: 227 DFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVL 286 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ PD+ ++ Q L ++G+S +K GG +++S CS++ Sbjct: 287 CDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPV 346 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + E VV ++LR VEL+ ++ + I Sbjct: 347 EDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379 Score = 40.3 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 24/98 (24%) Query: 356 KPGGIVV-------F---SNCSLDKQDSEEV--VQKVLRSSPIPVELVPLNSAYWKSIDM 403 + GG++V + S + +K ++ +V + L+ + I V + D+ Sbjct: 403 RRGGVLVSMFPSGKYLKDSTETTEKNENGDVNGCEDGLKETDISVVDATPEEQAEEVSDL 462 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E +RI P FF L++ Sbjct: 463 PL----ERCMRIIPHDQ--------NTGAFFIAVLQKK 488 >gi|30681697|ref|NP_850024.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|20466586|gb|AAM20610.1| unknown protein [Arabidopsis thaliana] gi|330252205|gb|AEC07299.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 808 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 31/213 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271 Q+A + +P + VLD+CAAPG KT QL+ V A DV Sbjct: 167 ITRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDV 226 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------------LFDAVL 311 +R L R+ + + + + FD VL Sbjct: 227 DFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVL 286 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ PD+ ++ Q L ++G+S +K GG +++S CS++ Sbjct: 287 CDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPV 346 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + E VV ++LR VEL+ ++ + I Sbjct: 347 EDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379 Score = 40.3 bits (92), Expect = 0.69, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 24/98 (24%) Query: 356 KPGGIVV-------F---SNCSLDKQDSEEV--VQKVLRSSPIPVELVPLNSAYWKSIDM 403 + GG++V + S + +K ++ +V + L+ + I V + D+ Sbjct: 403 RRGGVLVSMFPSGKYLKDSTETTEKNENGDVNGCEDGLKETDISVVDATPEEQAEEVSDL 462 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E +RI P FF L++ Sbjct: 463 PL----ERCMRIIPHDQ--------NTGAFFIAVLQKK 488 >gi|302695663|ref|XP_003037510.1| hypothetical protein SCHCODRAFT_64939 [Schizophyllum commune H4-8] gi|300111207|gb|EFJ02608.1| hypothetical protein SCHCODRAFT_64939 [Schizophyllum commune H4-8] Length = 495 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 79/464 (17%), Positives = 146/464 (31%), Gaps = 69/464 (14%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ L + K+ S+ +L L ++D+ A+V TL++ + V+ Sbjct: 7 AAKTLDRLDSKQGSIKGVL---------ATLPEKDRKRTAALVIETLKYKAALADVIKAC 57 Query: 71 ----LISSLPRKKYS---LQQLLRVSVAQILYLDVADYAVV-DLAVEQAKRDKENRHFAK 122 + + + LL I D V + + + Sbjct: 58 GLLAAEKKITSLNLALVLVHDLLL--AKGIQAGDGPVKQAVLRHKTRLQGQWTKMKIKRG 115 Query: 123 LVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 N+ ++ L W + L S + ++ + + Sbjct: 116 AKNNEDLAQVGDQRAALIPRYARVNTNLWSVDEAVKS------LQASGSKLADPFASTSN 169 Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 L L ++ + + G +QD ++ P + + Sbjct: 170 FTQDAHVPELL-----------LFSPKKAFHNDAAYKSGKLILQDKASCFPPLVLNPPAS 218 Query: 243 LS--VLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 V+D AAPG KT L + + K+ A + KRR + L+ + + + D Sbjct: 219 NKATVIDATAAPGNKTTYLSALMGNNGKLFAFERDKRRFQTLKTMVTKAACKNVLPVNAD 278 Query: 298 AFDYCPKKLFD----AVLVDAPCSSTGTIRRHPDVLWTRDTDDIV-----KSACFQRKLL 348 P +L+D CS +G + R +L T + +D K A FQ ++ Sbjct: 279 FLTIDPNDETYSGVTHILLDPSCSGSGIVNRLDYLLETEEENDSQDERLAKLASFQLMMI 338 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAYWKSIDMAM 405 + F +V+S CS+ ++E VV++ L S L +S M Sbjct: 339 KHAMKFPSV-CRIVYSTCSIHAAENEHVVREALASDECRTGNFTLASRDSVLPTWPRRGM 397 Query: 406 AL-------SPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 EG IR P +GFF R Sbjct: 398 REEMGECRADAEGLIRCLPG--------EDATNGFFVSCFVRRA 433 >gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina ymp] gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp] Length = 159 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR ++ L L + D+ F S+ D I++ R Sbjct: 20 ARREARTLAMQALYSWHIAGQPLNEIEAQFRVDNDF---SKVDGAYFHEILHGVPRQKTE 76 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 +D +L L +LR+S ++ +DV V++ +E AK Sbjct: 77 LDEAFTPLLDRPLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFGATDG-H 135 Query: 122 KLVNSILRR 130 K VN IL + Sbjct: 136 KFVNGILDK 144 >gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA 493] gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA 331] gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii CbuG_Q212] gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493] gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA 331] gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212] Length = 138 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K+ NAR + L L+ + LS D + +V T++ + Sbjct: 4 KTRHNARRYALQALYQWFFCETKPDALISQFMEEH---DLSDTDVAYFKEVVTGTIQHVA 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID ++ L + +LR+S+ ++L+ +V V+D A+E K Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 A 121 Sbjct: 121 K 121 >gi|150401879|ref|YP_001325645.1| NOL1/NOP2/sun family RNA methylase [Methanococcus aeolicus Nankai-3] gi|150014582|gb|ABR57033.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus aeolicus Nankai-3] Length = 335 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 20/245 (8%) Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 ++K + + P + G +++Q S+ IP + VLD+C+APGGKT L Sbjct: 106 YLFKIKNTKVPVGATPEYLFGYYYLQSISSVIPSLVLNPSEKDMVLDMCSAPGGKTTHLC 165 Query: 261 V---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 + V A +V+++R++ L+ N+ R+++ I+ DA FD +L+DAPCS Sbjct: 166 QLMNNKGIVVANEVNRKRIKSLKSNIFRMNITNTIILNSDALRLKYFNSFDKILLDAPCS 225 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 ++ +V DI + Q+ ++ GI +K GG +V+S CS + +++EEV+ Sbjct: 226 GNDIKDKNREV----SKRDIRYCSLRQKNMINIGIELLKTGGELVYSTCSAEIEENEEVI 281 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAV 436 + +L +EL+ +++ +++ G I++ P FF Sbjct: 282 EYILSMRK-DIELINISNFKDTITGISVVDGEVNGTIKVIPPNEP-----------FFIA 329 Query: 437 ALRRL 441 +R++ Sbjct: 330 KIRKI 334 >gi|63093894|dbj|BAD98175.1| hypothetical protein [Drosophila parabipectinata] Length = 433 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 78/448 (17%), Positives = 154/448 (34%), Gaps = 52/448 (11%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +L + K+ S+ L+ E + R + + +D+ ++ Sbjct: 15 RATAKILKAAVEKQKSIKTLIFEE-KHARVRSMHAVLKAYSD--------NRGAVDSAIE 65 Query: 69 FV-LISSLPRKKYSLQQLLRVSVAQILYLDV-------ADYAVVDLAVEQAKRDKENRHF 120 L+ P SL ++L V +++++ V+ + + Sbjct: 66 TTGLLKDNPNLDPSLAKVL---VTELIFVRKKLNGESKPVQKVLSYEEKLKEAISGAGFE 122 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 K N R++ L Q + ++ +W ++ L LA A ++ Sbjct: 123 KKEPNPRYVRINTNLYSLSQALEYLAS-EDWRRKELPADASYADFLAAVKALEEDEFMT- 180 Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 ++ V++ S + + +Q+ + +L Sbjct: 181 ---------DLQVEGVLVFHHKWSSYW-----SSHEFVKQKKFILQNKGTCLAAELLAPP 226 Query: 241 NNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 + +VLD+CAAPG KT + + ++ A++ S R L I D Sbjct: 227 SGSTVLDMCAAPGMKTLHLCNFMKNKGRIYAVEQSTERYRVLCNITSEAGCDIVTPILGD 286 Query: 298 AFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 A + + +LVD CS G R +D + K A Q K+L ++ Sbjct: 287 ALRMNAENCPEVEYILVDPSCSGNGMQSRMNVCDEEKDDQRLFKLAGLQVKILSHAMTAF 346 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGW 412 + + CSL K+++EEVV++ L+ +P L L + + D A + Sbjct: 347 PNVKRIAYCTCSLYKEENEEVVKRCLQVNPSFKLLSCKKALRNKWHNVGDTEYAKIGKNV 406 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRR 440 + PD S DG F + Sbjct: 407 LYCLPD--------SDLTDGIFLALFEK 426 >gi|146304380|ref|YP_001191696.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702630|gb|ABP95772.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348] Length = 346 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 42/234 (17%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTAL 269 + L G+ Q ++ +L + ++D+ A PGGK + AK+ Sbjct: 149 VAELDVVKRGLAISQGKASMYVAKLLDPRPDEIIVDMNAYPGGKLTHVYQLQPKAKIMGF 208 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRHP 326 D ++++++KLR LD L + D+ D+ + D V++D PCS+ G P Sbjct: 209 DHTRKKIDKLRNILDTLKMK-MDVYVADSRYLYEDLGIRNVDKVMIDPPCSALGV---RP 264 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + + +DI + +Q++ L +KPGG V++S C+ ++EEV+ + Sbjct: 265 KIFDRKTKEDIQNFSSYQKQFLNSAYKILKPGGTVIYSTCTTTLAENEEVI------TDP 318 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E+ E IR P++ M GFF L + Sbjct: 319 RFEI-------------------EFMIRFHPNV--------HQMTGFFIAKLIK 345 >gi|255087632|ref|XP_002505739.1| predicted protein [Micromonas sp. RCC299] gi|226521009|gb|ACO66997.1| predicted protein [Micromonas sp. RCC299] Length = 398 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 22/189 (11%) Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS------------GAKVTALDVSKRRLE 277 + +P + G + VLD+CA+PG KT Q I V A D++ RR Sbjct: 121 SMVPAAILGVEPHHFVLDMCASPGSKTTQCIEQLNANNTAAGSIPTGCVVANDINPRRAY 180 Query: 278 KLRCNLDRLHL----------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L L +A+ P+ ++D ++ D PCS GT+R++P Sbjct: 181 FLVRRCAALGAATGSLMVTNHHAQWFPNPGDSGRYPEGVYDRIICDVPCSGDGTLRKNPQ 240 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + + Q ++ +G + +K GG +V+S CS + ++E VV +++R Sbjct: 241 IWSEWRPEFAMGLHQLQLRIAQRGAALLKVGGYMVYSTCSFNPVENEAVVAELVRRCGGA 300 Query: 388 VELVPLNSA 396 +E+V + Sbjct: 301 LEIVDASDR 309 >gi|145357035|ref|XP_001422728.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582971|gb|ABP01045.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 555 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 99/295 (33%), Gaps = 82/295 (27%) Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQ----------LIVSGAKVTALDVSKRRLEKL 279 + +P + + VLDLCA+PG KT Q + V A D++ R L Sbjct: 209 SMVPAAILQVEPHHRVLDLCASPGSKTTQALEALNVNGEEGSASGCVIANDINPMRCYFL 268 Query: 280 RCNLD--RLHLYAEDIIEMDAFDYC------------------PKKLFDAVLVDAPCSST 319 R + A Y P+ +D ++ D PCS Sbjct: 269 VRRCAALRNATANLMVTTHQAQWYPNINVPTTDKALTERGGRYPEGSYDRIICDVPCSGD 328 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++P + + + Q ++ +G + + GG +V+S CS + ++E VV + Sbjct: 329 GTLRKNPQIWSEWRPEFAMGLHKLQLRIAQRGAALLNVGGYMVYSTCSFNPVENEAVVAE 388 Query: 380 VLRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------PEGWIR 414 +++ +E+V + + + + P G R Sbjct: 389 LIKRCGGALEIVDASDRIPELLRRPGISTWNVMTMVEGNVVEYPKYEDSQASTVPIGLKR 448 Query: 415 -----ITP----------------------DMLEKIDGVSSGMDGFFAVALRRLI 442 + P ++ M GFFAV L+++ Sbjct: 449 KFAKSMWPPAQSLARMGHLGKRIKSTAIPLQHCMRLVPHLQDMGGFFAVLLKKVA 503 >gi|326515656|dbj|BAK07074.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 690 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 25/170 (14%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------------ 306 V A DV +R L R+ + +A ++ + Sbjct: 32 MVVANDVDVQRCNLLIHQTKRMCTANLVVTNHEAQNFPGCSVAKFCPEACVDESKLQRLE 91 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L D PCS GT+R+ PD+ T + Q ++ ++GI+ +K GG +V+S C Sbjct: 92 FDRILCDVPCSGDGTVRKAPDMWRTWNIGMGNGLHRLQVEIAMRGIALLKVGGRMVYSTC 151 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 S++ ++E VV ++LR VEL+ +++ + I +R Sbjct: 152 SMNPVENEAVVGEILRRCGDSVELLDVSNELPELIRRP-------GLRTW 194 >gi|297825119|ref|XP_002880442.1| hypothetical protein ARALYDRAFT_320078 [Arabidopsis lyrata subsp. lyrata] gi|297326281|gb|EFH56701.1| hypothetical protein ARALYDRAFT_320078 [Arabidopsis lyrata subsp. lyrata] Length = 838 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV-----------SGAKVTALDV 271 Q+A + +P ++ VLD+CAAPG KT QL+ V A DV Sbjct: 167 ITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDV 226 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------------LFDAVL 311 +R L R+ + + + + FD VL Sbjct: 227 DFKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVL 286 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R+ PD+ ++ Q L ++G+S +K GG +++S CS++ Sbjct: 287 CDVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPV 346 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + E VV ++LR VEL+ ++ + I Sbjct: 347 EDEAVVAEILRRCGDSVELLDVSDKLPELIRRP 379 Score = 40.3 bits (92), Expect = 0.60, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 29/129 (22%) Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF----------SNCSLDKQDSE 374 L D + + + GG++V S + K ++ Sbjct: 377 RRPGLKKWKVRDKGGWITSYKDVPQN-----RRGGVLVSMFPSGKNLKDSTETTQKNENG 431 Query: 375 EV--VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +V + L+ + +PV + + D+ + E +RI P Sbjct: 432 DVNGCEDGLKEADVPVVDATPDEQAEEVSDLPL----ERCMRIMPHDQ--------NTGA 479 Query: 433 FFAVALRRL 441 FF L+++ Sbjct: 480 FFIAVLQKI 488 >gi|308811442|ref|XP_003083029.1| proliferating-cell nucleolar protein-like (ISS) [Ostreococcus tauri] gi|116054907|emb|CAL56984.1| proliferating-cell nucleolar protein-like (ISS) [Ostreococcus tauri] Length = 681 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR-----------LEK 278 + +P + ++ VLD+CA+PG KT Q + + A+D + R L Sbjct: 198 SMVPAAILQVQSHHRVLDMCASPGSKTTQALEALNMD-AVDGIEERRCAALGNATANLMV 256 Query: 279 LRCNLDRLHLYAEDIIEM---DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 + ++ P+ +D ++ D PCS GT+R++P + + Sbjct: 257 TTHQAQWYPNVNVPLETEAPVESGGRYPEGSYDRIICDVPCSGDGTLRKNPQIWSEWRPE 316 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 + Q ++ +G + +K GG +V+S CS + ++E VV ++++ +E+V + Sbjct: 317 FAMGLHKLQLRIAQRGAALLKVGGYMVYSTCSFNPVENEAVVAELIKRCGGALEIVDASD 376 Query: 396 AYWKSIDMA 404 + + Sbjct: 377 RVPELLRRP 385 >gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct] Length = 160 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L L + D+ F S+ D I++ R Sbjct: 19 AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDF---SEVDGAYFHEILHGVPRQKS 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D+ + L L +LR+S ++ +DV V++ +E AK Sbjct: 76 ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 135 HKFVNGVLDK 144 >gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PA7] gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa PA7] Length = 159 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L L + D+ F S+ D I++ R Sbjct: 19 AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDF---SEVDGAYFHEILHGVPRQKS 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D+ + L L +LR+S ++ +DV V++ +E AK Sbjct: 76 ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 135 HKFVNGVLDK 144 >gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719] gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719] Length = 159 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L L + D+ F S+ D I++ R Sbjct: 19 AARRKARSLAVQALYSWQIAGQPLHEIEAQFRADNDF---SEVDGAYFHEILHGVPRQKS 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D+ + L L +LR+S ++ +DV V++ +E AK Sbjct: 76 ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 135 HKFVNGVLDK 144 >gi|156061725|ref|XP_001596785.1| hypothetical protein SS1G_03008 [Sclerotinia sclerotiorum 1980] gi|154700409|gb|EDO00148.1| hypothetical protein SS1G_03008 [Sclerotinia sclerotiorum 1980 UF-70] Length = 926 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 61/240 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------LFDAVLV 312 A D +R L L RL + DA Y K FD +L Sbjct: 232 IANDADYKRSHMLIHQLKRLSSPNLIVTNHDATMYPSIKLPPTPENPATNRYLKFDRILA 291 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT R++ ++ + + + Q ++L++ + +K GG VV+S CS++ + Sbjct: 292 DVPCSGDGTTRKNVNLWKDWNPGNALGLYITQVRILVRALQMLKVGGRVVYSTCSMNPIE 351 Query: 373 SEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT----------- 416 +E VV + P V+LV + + + + R+ Sbjct: 352 NEAVVASAIERCGGPEKVKLVSSDDQLPLLKRRPGLKTWTVMDKKGRVWNSWAELQKYIA 411 Query: 417 ----------------P-----------DMLEKIDGVSSGMDGFFAVALRR----LIQPK 445 P D ++ GFF L + +P+ Sbjct: 412 ENGQDDWTGRLVEGMFPPTDEAMSSVPLDQCMRVYAHLQDTGGFFITILEKQSEFKAKPE 471 >gi|18312148|ref|NP_558815.1| RNA binding protein [Pyrobaculum aerophilum str. IM2] gi|18159582|gb|AAL62997.1| RNA binding protein (fmu, PCNA P120 homolog), probable [Pyrobaculum aerophilum str. IM2] Length = 379 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 29/232 (12%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271 + +LP +AEG+++ Q A + + + +DL +APGGKT L G +V A+D Sbjct: 167 LRNLPEYAEGLFYSQSLPAILVGHIARRITQTDAVDLNSAPGGKTTHLAQMGIRVIAVDR 226 Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 S +++EKLR RL L DI+ D+ PK LVD PC+ G P Sbjct: 227 SAQKIEKLRSEAARLGLDVFIDILLHDSRYLDRDFPKIKAGVALVDPPCTDIGV---RPK 283 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + A +Q + L +K V++S C+L ++E V++K Sbjct: 284 IYHKVTFEAAKTLARYQIQFLKTA---LKIAPYVIYSTCTLTYIENEGVIEKA------G 334 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 E+V A R P + GFF LR Sbjct: 335 AEIVDAGIEIG-----APGWGCRECRRFLPHV--------HNTPGFFIAVLR 373 >gi|322488528|emb|CBZ23774.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 634 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 97/271 (35%), Gaps = 52/271 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------IVSGAKVTALDVSK 273 G Q+ + +P L + VLD+CAAPG KT+Q+ V A DV Sbjct: 130 GYLTRQETVSMLPPLLLQVEPGMRVLDMCAAPGSKTSQILELLLTGEPERGVVVANDVKA 189 Query: 274 RRLEKLRCNLDRLHLYAED--IIEMDAFDYCP---KKLFDAVLVDAPCSSTGTIRRHPDV 328 RL+ L +R I DA + + FD VL D CS GT+R+ D+ Sbjct: 190 SRLDVLHHQTNRAAGANLHLIITNTDATRFPLLPLAERFDRVLCDVMCSGDGTLRKSIDM 249 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D+ Q ++LL+G++ K GGIVV+S CSL+ + E VV L + Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309 Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420 EL+ A + + P M Sbjct: 310 ELMDPTPLLHGLCASPGMTSWTVTTRDLTTTLHNYEDAKAFMEAQTDRRTFQYAPSMFAN 369 Query: 421 ------------EKIDGVSSGMDGFFAVALR 439 +I + GFF ALR Sbjct: 370 TELLVEQHIERTRRILPHTQDTGGFFVAALR 400 >gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1] gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1] Length = 134 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + L D R + + Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFSGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 P++D ++ L + + ++R++ ++ + DV ++ A+E AK + Sbjct: 58 KKPQLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGAD 117 Query: 118 RHFA 121 Sbjct: 118 ESHK 121 >gi|119513323|ref|ZP_01632361.1| Fmu (Sun) [Nodularia spumigena CCY9414] gi|119462030|gb|EAW43029.1| Fmu (Sun) [Nodularia spumigena CCY9414] Length = 326 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 92/274 (33%), Gaps = 13/274 (4%) Query: 154 ERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PES 211 RL K+ S P + + + + L E Sbjct: 13 RRLFENPDKQEKFIDSLINPQPFNPAILWCQNKPDILPFPVELPTNWQPDFVDRLLLGEK 72 Query: 212 IVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVT 267 P +G ++ D S+ + V D+CA+PGGK+ + Sbjct: 73 PGKHPLHQQGYFYCLDFSSVFAASVLLTIPQPVGLVFDMCASPGGKSVFAWKALQPDLLI 132 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRH 325 + +V +RL L NL R + ++ D+ + D V+VDAPC+ + + Sbjct: 133 SNEVIGKRLGMLISNLKRCDISPCTVVNRDSSIFAENMPLCSDLVMVDAPCTGQSLLAKG 192 Query: 326 PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 I +SA Q++++ V P G +V+ C+ +++E+V + L P Sbjct: 193 EKAPGCFHPTAINRSANRQKRIIANSAQLVAPQGYLVYMTCTYSAEENEQVCEWFLSKFP 252 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 + LS RI P Sbjct: 253 QF-----QAVRVSYLDEYQSHLSNIFCYRIFPQD 281 >gi|327294253|ref|XP_003231822.1| methyltransferase [Trichophyton rubrum CBS 118892] gi|326465767|gb|EGD91220.1| methyltransferase [Trichophyton rubrum CBS 118892] Length = 852 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 56/231 (24%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310 A D +R L + RL+ + DA Y K FD + Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++ ++ + + + Q ++L + + +K GG VV+S CS++ Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359 Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMA-----------------MALSPEG 411 ++E V+ V+ VE+V + + A + E Sbjct: 360 IENEAVISHVIDRCGGSSKVEIVDCENQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419 Query: 412 WIRITP---------------------DMLEKIDGVSSGMDGFFAVALRRL 441 ++ P ++ GFF L + Sbjct: 420 VRKLNPAASRLVEGMFPPLGDADVGDLTRCMRVYPHMQDTGGFFITVLEKK 470 >gi|322500913|emb|CBZ35990.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 634 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 96/271 (35%), Gaps = 52/271 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------LIVSGAKVTALDVSK 273 G Q+ + +P L + VLD+CAAPG KT+Q V A DV Sbjct: 130 GYLTRQETVSMLPPLLLQVGPGMRVLDMCAAPGSKTSQLLELLLTGESERGVVVANDVKA 189 Query: 274 RRLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 RL+ L +R HL + P + FD VL D CS GT+R+ D+ Sbjct: 190 SRLDVLHHQTNRAAGAHLHLIITNTDATRFPLLPPAERFDRVLCDVMCSGDGTLRKSIDM 249 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D+ Q ++LL+G++ K GGIVV+S CSL+ + E VV L + Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309 Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420 EL+ A + + P M Sbjct: 310 ELIDPTPLLHGLCASPGMTSWTITTRDLTTALHNYEDAKAFMEAQTDRRTFQYAPSMFAN 369 Query: 421 ------------EKIDGVSSGMDGFFAVALR 439 +I + GFF ALR Sbjct: 370 TELLVDQHIERTRRILPHTQDTGGFFVAALR 400 >gi|308505330|ref|XP_003114848.1| hypothetical protein CRE_28431 [Caenorhabditis remanei] gi|308259030|gb|EFP02983.1| hypothetical protein CRE_28431 [Caenorhabditis remanei] Length = 398 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 19/263 (7%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 +E+L + I +A + + + ++ + E + ++ + + I + + Sbjct: 84 REQLIHEMESRFFGKIMEAGDTAVCVPKSLPWYKEAYQTPMSRTAVRSHPILAQLHNFLV 143 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGA 264 G Q+A + IP L + VLDLCAAPG KT Q Sbjct: 144 TEAEL---GNLSRQEAVSMIPPLLLAPTSEHYVLDLCAAPGSKTTQLLEMIHENDENPKG 200 Query: 265 KVTALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKK-------LFDAVLVDAPC 316 V A DV +R + L R A + DA + FD VL D C Sbjct: 201 MVIANDVDMKRCYMLIHHTLKRFRTAACAVTCEDAARFPQISDSDGGLIQFDRVLADVIC 260 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GT+R++P++ D + Q + +G +K GG +V+S CS++ + E V Sbjct: 261 SGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAV 320 Query: 377 VQKVLRSSPIPVELVPLNSAYWK 399 V ++LR + ++LV + + Sbjct: 321 VAQLLRDAKGSLKLVDTSKLLPE 343 >gi|121701151|ref|XP_001268840.1| methyltransferase (Ncl1), putative [Aspergillus clavatus NRRL 1] gi|119396983|gb|EAW07414.1| methyltransferase (Ncl1), putative [Aspergillus clavatus NRRL 1] Length = 891 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL + DA Y + FD Sbjct: 224 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPRLDAEGKVHKNRYLKFDR 283 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 284 ILADVPCTGDGTARKNISVWREWGPANALGLYATQVRILVRALQMLKVGGRVVYSTCSMN 343 Query: 370 KQDSEEVVQKVLRSSPIP--VELVP----------------------------------- 392 ++E VV + VE++ Sbjct: 344 PVENEAVVASAIARCGGAANVEILDCSKELPGLKRAAGVRSWKVMDREGRMYNNWKEVEE 403 Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L + IRI P + + GFF L + Sbjct: 404 QREREGINGLGRIAEGMFPPTGENADLPLDRCIRIYPHLQD--------TGGFFITVLEK 455 Query: 441 L----IQPK 445 +P+ Sbjct: 456 KSEIRAKPE 464 >gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PAO1] gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa UCBPP-PA14] gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa LESB58] gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192] gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa PAb1] gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016] gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1] gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14] gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192] gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58] gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016] Length = 159 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L L + D+ F S+ D I++ R Sbjct: 19 AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDF---SEVDGAYFHEILHGVPRQKS 75 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D+ + L L +LR+S ++ +DV V++ +E AK Sbjct: 76 ELDSTFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDG- 134 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 135 HKFVNGVLDK 144 >gi|313886856|ref|ZP_07820560.1| NOL1/NOP2/sun family protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923653|gb|EFR34458.1| NOL1/NOP2/sun family protein [Porphyromonas asaccharolytica PR426713P-I] Length = 461 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 129/313 (41%), Gaps = 31/313 (9%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVML 198 + +P + +L+ Y E I +A + + L + + A+ Sbjct: 1 MQTPVPSELRAKLQLDYP-EHATRIVEALETLPTVSLRLNPARTLTTLPHAELRDGAIPW 59 Query: 199 PTGGIRLKELPESIV--SLPGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAP 252 + L E P + G ++VQDASA ++ L + LDLCAAP Sbjct: 60 LPAELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWERLGWHTAPRLALDLCAAP 119 Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCN-LDRLHLYAEDIIEMDAFDYCP--KKL 306 GGK L+ + + ++ +R + L N + I + D P + Sbjct: 120 GGKSTLLRDLLPEETLLVSNEILPKRCKILVENLVKWCGADQMIITQEDPQQLTPLLRGA 179 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 D +LVDAPCS G +RR + + QR +L + + + P GI++++ C Sbjct: 180 CDLILVDAPCSGEGLMRRDEEARRMWSPQLVSDCVTRQRAILQEAMRMLAPEGILLYATC 239 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 +L++++++++VQ +L P EL+ L+ + + +A A + + + P ++ Sbjct: 240 TLNQEENDQMVQWLLDHYPC--ELIDLSRSAER---IAGAYATSYGLHLWPGIVRGEGQ- 293 Query: 427 SSGMDGFFAVALR 439 + ALR Sbjct: 294 -------YLAALR 299 >gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100] gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100] Length = 185 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 6/134 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEY--GDSAFRLLSQRDQILVRAIVNVTLRF 59 + ARL + L + + L+ +L + + D+ R IV R Sbjct: 19 QPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETVEIYAGADRSFFRDIVEGIARG 78 Query: 60 LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116 +ID + L L R L+ +LR V ++ DV AV++ VE AK Sbjct: 79 QAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAVINEYVEIAKDFFG 138 Query: 117 NRHFAKLVNSILRR 130 +VN +L R Sbjct: 139 GEE-PGVVNGVLDR 151 >gi|226484588|emb|CAX74203.1| Putative methyltransferase C17D4.04 [Schistosoma japonicum] Length = 605 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 105/312 (33%), Gaps = 92/312 (29%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------------L 259 Q+A + +P L ++ ++LDLCAAPG K+AQ Sbjct: 4 ISRQEAVSMLPPLLLDIRSHHTILDLCAAPGSKSAQLVELLHSDAEAILSKSDSESAPKY 63 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------------- 303 I V A DV +RR + + RL I + DA + Sbjct: 64 IEPTGMVIANDVDQRRCYMMVHQVKRLQSPCVVITQEDASCFPRLYLTLSSDEMTGQRDL 123 Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGG-- 359 + +FD VL D PCS GT+R++PD+ + + Q ++L +G+ ++ P G Sbjct: 124 RQLVFDRVLADVPCSGDGTLRKNPDLWLRWSPNLGIGEHPLQCRILKRGLELLRDPVGDS 183 Query: 360 ----IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-- 413 +V+S CS + ++E VV +L++ V L+ D + G Sbjct: 184 TNYSRLVYSTCSFNPVENEAVVASILQACRGAVRLIEPELLECVLPDPSKNKCSNGHKFK 243 Query: 414 ------------------------------RITPDML-------------EKIDGVSSGM 430 I P + +I Sbjct: 244 ARLGLNNWRVMDKKGVWFTSYDEVPTGQRNHIYPSLFPPSNVADLHLERCRRILPHDQNT 303 Query: 431 DGFFAVALRRLI 442 GFF L ++ Sbjct: 304 GGFFIAVLEKIA 315 >gi|303281528|ref|XP_003060056.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458711|gb|EEH56008.1| predicted protein [Micromonas pusilla CCMP1545] Length = 812 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 70/191 (36%), Gaps = 50/191 (26%) Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P+ FD ++ D PCS GT+R++P + + + Q ++ +G++ +K GG +V Sbjct: 361 PEGSFDRIICDVPCSGDGTLRKNPQIWSEWRPEFAMGLHALQLRIAQRGVALLKVGGYMV 420 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA----------------MA 406 +S CS + ++E VV ++LR +ELV + Sbjct: 421 YSTCSFNPVENEAVVAELLRRCGDAIELVDASDRVKGLRRREGMTTWKVITTVDDEILEH 480 Query: 407 LSPEGWIR-----------ITPDMLE----------------------KIDGVSSGMDGF 433 S E R P M ++ M GF Sbjct: 481 ASYEDCQRDASLGVGLRRAFRPSMWPPVASGVTRLGVRVRGPPLRRCVRLVPQDGDMGGF 540 Query: 434 FAVALRRLIQP 444 FA +R++ +P Sbjct: 541 FAALIRKV-KP 550 >gi|119872274|ref|YP_930281.1| Fmu (Sun) domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673682|gb|ABL87938.1| Fmu (Sun) domain protein [Pyrobaculum islandicum DSM 4184] Length = 416 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 150/444 (33%), Gaps = 57/444 (12%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL-----VRAIVNVTLRFLPRIDAV 66 + +L V + ++L AF+ + QR + L +R + + Sbjct: 13 ARVLYEVTKNGLTLD---------YAFQKVKQRWRRLDSFKVFYDASFDAVRHYYLLRHL 63 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +L S+ + + R ++LY VE+ +R R A+ + Sbjct: 64 ASALLGSTSAKAVARTWFVYR--ADKLLYNR--------DLVERYRRRVLKRARARPEEA 113 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFD 185 + + S P + L N +E + + +++ + +K D Sbjct: 114 LASLETLRGDLPRYLSVKYSYHPAIVETLLANLPPEEVERILDAGNNTWIWLRVNTLKTD 173 Query: 186 IETWAHKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 ++ L R+ + L QD ++ V Sbjct: 174 VDKALKMLEREAEVEPHPRIPFALLLKKAKRPVQYLTAVRTFAAVPQDLASIYAVLSLDP 233 Query: 240 LNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 +LDL AAPG K QL AKV A D S +R+ +++ L L + Sbjct: 234 APGEKILDLAAAPGMKTSLIVQLAEGRAKVVAADFSAKRVARMKHLLKALGAGDAVEVVR 293 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + FD L+DAPC+S+G + P V ++ + QR+LL +S + Sbjct: 294 ADSRRLKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPRYGTLQRELLANALSLAE 353 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 VV++ CS+ Q+ EEVV A D+A A R Sbjct: 354 K---VVYAVCSIMPQEGEEVVASA------------PAKAEKPHPDLAPAYRGGPGGRTF 398 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P + + F+ +++ Sbjct: 399 PHI--------HKSEAFYIALVQK 414 >gi|268569134|ref|XP_002640441.1| Hypothetical protein CBG08493 [Caenorhabditis briggsae] gi|187032638|emb|CAP28308.1| hypothetical protein CBG_08493 [Caenorhabditis briggsae AF16] Length = 416 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 63/263 (23%), Positives = 107/263 (40%), Gaps = 19/263 (7%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 +E+L + I +A + + + ++ + E + ++ + + I + + Sbjct: 85 REQLIHEMENRFFGKIVEAEDTAVCVPKSLPWYKEAYQTPMSRTAVRSHPILAQLHNFLV 144 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGA 264 G Q+A + IP L + VLDLCAAPG KT Q Sbjct: 145 TEAEL---GNLSRQEAVSMIPPLLLAPTSEHYVLDLCAAPGSKTTQLLEMIHENDENPKG 201 Query: 265 KVTALDVSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPK-------KLFDAVLVDAPC 316 V A DV +R + L R A + DA + FD VL D C Sbjct: 202 MVIANDVDMKRCYMLIHHTLKRFRTAACAVTCEDAARFPQIADSDGGLIQFDRVLADVIC 261 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S GT+R++P++ D + Q + +G +K GG +V+S CS++ + E V Sbjct: 262 SGDGTLRKNPEIWKKWTPQDGLGLHRMQIAIARKGAQQLKVGGRMVYSTCSMNPIEDEAV 321 Query: 377 VQKVLRSSPIPVELVPLNSAYWK 399 V ++LR S ++LV + + Sbjct: 322 VAQLLRDSKGSLKLVDTSKMLPE 344 >gi|225429594|ref|XP_002279425.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 504 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 90/457 (19%), Positives = 164/457 (35%), Gaps = 68/457 (14%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ +L CV++ + S S R++ A+V TL+ L I V Sbjct: 32 ARREAAKVLQCVLQGDAKRRAV---GSIKSLVYSPSVRNKKATFALVCQTLKHLSIIKDV 88 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 LD L K + L+ + IL+ + + K + +L + Sbjct: 89 LD--SARILNAKWKRQEGLMYIITYDILF-----GQEISSVGDAEKFLLLQKDAIQL--A 139 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 + R + R+K++ ++ + + IP+ K R +K D+ Sbjct: 140 LARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNT--------------------LKLDV 179 Query: 187 ETWAHKLNAVMLPTGGIRLK-----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 E+ H+L + + + + P G ++S+ G Sbjct: 180 ESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNG----SGKASSMVAVALGPEP 235 Query: 242 NLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA 298 VLD C+APG KT L + K+ A ++ R+++L + +++ D Sbjct: 236 GWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGDF 295 Query: 299 ----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL----------WTRDTDDIVKSACFQ 344 A+L+D CS +GT D L T+ + K A FQ Sbjct: 296 LNLNPMDPSYSKVRAILLDPSCSGSGTTAERLDHLLPSYAAGDATDVAGTERLNKLAAFQ 355 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +K L +SF VV+S CS+ + ++E+V++ VL + + W + Sbjct: 356 KKALEHALSFPAVE-KVVYSTCSIHQIENEDVIKSVLPLAASHGFQLATPFPQWPRRGLP 414 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + E +R P ++ GFF R Sbjct: 415 VFEGSEHLLRTHPVEDKE---------GFFIALFVRK 442 >gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp. SKA14] gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp. SKA14] Length = 159 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + L+ + A + D A+V+ L ID Sbjct: 27 ARRRAVQALYAWQISGGNAQSLIAQFAHEQAREI---ADLAYFEALVHGVLDNRRDIDEA 83 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + + +LR++ ++ Y LDV V++ A+E AKR + H VN Sbjct: 84 LGPYLDRGIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAKRF-GSEHGHTYVN 142 Query: 126 SILRRVSREK 135 +L R + E Sbjct: 143 GVLDRAAVEW 152 >gi|270013829|gb|EFA10277.1| hypothetical protein TcasGA2_TC012481 [Tribolium castaneum] Length = 767 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 + G +QD ++ +PV + S+LD+CAAPG KT Q I + K+ A++ Sbjct: 200 QHAAYKNGSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDNIGKIYAVE 259 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328 + +R L ++ + I D ++ D +LVD CS +G R Sbjct: 260 IGTKRFHTLEKIVESSGASCVEPINSDVLQLTAQQYPDIDYILVDPSCSGSGLTYRVETG 319 Query: 329 LWTRDTD--DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +D I + A FQ K+L +S VV+S CS+ +++E+VV++VL + Sbjct: 320 QQAQDQHTERIERLAGFQIKILRHALSKFPKVKRVVYSTCSVYAEENEDVVRQVLETC-N 378 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +LVP + K S G + GFF RL Sbjct: 379 RFKLVPADQFLGKKW-YNFGSSEFGDL---GKFCLYAKPDIDLTSGFFVAVFERL 429 >gi|189241014|ref|XP_968918.2| PREDICTED: similar to williams-beuren syndrome critical region protein [Tribolium castaneum] Length = 840 Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 97/235 (41%), Gaps = 12/235 (5%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 + G +QD ++ +PV + S+LD+CAAPG KT Q I + K+ A++ Sbjct: 287 QHAAYKNGSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDNIGKIYAVE 346 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328 + +R L ++ + I D ++ D +LVD CS +G R Sbjct: 347 IGTKRFHTLEKIVESSGASCVEPINSDVLQLTAQQYPDIDYILVDPSCSGSGLTYRVETG 406 Query: 329 LWTRDTD--DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +D I + A FQ K+L +S VV+S CS+ +++E+VV++VL + Sbjct: 407 QQAQDQHTERIERLAGFQIKILRHALSKFPKVKRVVYSTCSVYAEENEDVVRQVLETC-N 465 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +LVP + K S G + GFF RL Sbjct: 466 RFKLVPADQFLGKKW-YNFGSSEFGDL---GKFCLYAKPDIDLTSGFFVAVFERL 516 >gi|159131542|gb|EDP56655.1| methyltransferase (Ncl1), putative [Aspergillus fumigatus A1163] Length = 886 Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL + DA Y + FD Sbjct: 223 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 282 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 283 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 342 Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392 ++E VV + VE++ Sbjct: 343 PVENEAVVASAISRCGGSANVEILDCSNELPGLKRAAGVRTWKVMDREGRMYNSWKEVEE 402 Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L E IR+ P + + GFF L + Sbjct: 403 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 454 Query: 441 L----IQPK 445 +P+ Sbjct: 455 KSEIRAKPE 463 >gi|70996066|ref|XP_752788.1| methyltransferase (Ncl1) [Aspergillus fumigatus Af293] gi|66850423|gb|EAL90750.1| methyltransferase (Ncl1), putative [Aspergillus fumigatus Af293] Length = 882 Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL + DA Y + FD Sbjct: 219 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 278 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 279 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 338 Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392 ++E VV + VE++ Sbjct: 339 PVENEAVVASAISRCGGSANVEILDCSNELPGLKRAAGVRTWKVMDREGRMYNSWKEVEE 398 Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L E IR+ P + + GFF L + Sbjct: 399 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 450 Query: 441 L----IQPK 445 +P+ Sbjct: 451 KSEIRAKPE 459 >gi|227878672|ref|ZP_03996587.1| tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] gi|227861736|gb|EEJ69340.1| tRNA/rRNA methyltransferase [Lactobacillus crispatus JV-V01] Length = 290 Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 62/142 (43%), Gaps = 15/142 (10%) Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +LVDAPCS G R++P+ + D ++ Q+++L + + ++PGG +++S C+ Sbjct: 1 MILVDAPCSGEGMFRKNPEAIDYWSQDYVLTCQNRQKEILNEAVKMLQPGGRLIYSTCTF 60 Query: 369 DKQDSEEVVQKVLRSSPI-----PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 ++ E++V + + ++ ++ + D L+ +R P Sbjct: 61 APEEDEQIVSWLNKEYGFTILDTGIQTNKIDVGQPEWADGNPDLTK--TLRFWPQDGIGE 118 Query: 424 DGVSSGMDGFFAVALRRLIQPK 445 F L+++ + + Sbjct: 119 GQ--------FVAVLQKVGKAR 132 >gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis] Length = 131 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I++ ++ + +V+ L Sbjct: 1 MKRRT-AREKALQALFQIDVSDIAVNEAIEHALDEEKTD-------PFFEQLVHGVLEHQ 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR++ ++ Y D+ ++ A+E AKR + Sbjct: 53 DQLDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF-GDD 111 Query: 119 HFAKLVNSILRR 130 K VN +L Sbjct: 112 KATKFVNGVLSN 123 >gi|223998784|ref|XP_002289065.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976173|gb|EED94501.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 362 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 107/269 (39%), Gaps = 51/269 (18%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 SL G G +Q+ + + + +VLD+C+APGGKT+ + I + V A + Sbjct: 103 SLNGVLVGKMMLQNLPSVVVAHVLDPQQGETVLDMCSAPGGKTSHVASLIRNNGLVVACE 162 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDA-------------------------------- 298 ++++ R + + +D+ Sbjct: 163 KGRKKMVTARDFFQSMGATCIVPLSLDSTKLLIDDGDVFDWKSPKEIVKSASASSKDGLL 222 Query: 299 -FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 FD +L+D PCS+ G R ++ + +++K + +Q+ + + +K Sbjct: 223 SIKGFHPNSFDRILLDPPCSALGL--RPKLLVDVKSLPELLKHSDYQQLFVRSAVPLLKV 280 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN---SAYWKSIDMAMALSPEGWIR 414 GG++ +S C+++ ++E +V+ +L P ++LVP+ + ++ G +R Sbjct: 281 GGVLSYSTCTINASENEGIVKFILSEFPC-MKLVPIADYIPGRAGLEGLGLSDEERGMVR 339 Query: 415 ITPDMLEKIDGVSSGMD--GFFAVALRRL 441 + D + D GFF ++ Sbjct: 340 -------RFDPSDTATDTMGFFVAKFIKI 361 >gi|307297435|ref|ZP_07577241.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916695|gb|EFN47077.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2] Length = 334 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 79/226 (34%), Gaps = 13/226 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ LS + D A LS +D+ I+ LR ID Sbjct: 4 ARSIALQTLSFFDANGY-----ISFRKLDIALSTLSSQDRSFCMNIIYGCLRKRVSIDFE 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + +++ LR+ QILY+ + +YA + +V+ + F LVN Sbjct: 59 LSRFLTKP-SKLPHAVLNALRIGAFQILYMKSIPEYAALKSSVD----MIGVKEFKGLVN 113 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 ++LR++ E + + + PEW F + + + +P + Sbjct: 114 AVLRKLINEGPAERKPLNILYSHPEWLVNYWREFAWIDDFEELLEYNQTPPVQTVISFGR 173 Query: 186 IETWAHK--LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 L + + + SI +L E + + + Sbjct: 174 ENELIKNGFLFDKSEYSDLSCVFQKGSSIENLQIIDEIEYLLSKTA 219 >gi|196009916|ref|XP_002114823.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens] gi|190582885|gb|EDV22957.1| hypothetical protein TRIADDRAFT_28123 [Trichoplax adhaerens] Length = 426 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 22/215 (10%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 +L G + ++Q+ + + + ++LD+C+APGGK + + + + ALD Sbjct: 176 ALNGIGDEFVFLQNLPSVVASHVLNPHEGDTILDMCSAPGGKATHIATLMKNKGTIIALD 235 Query: 271 VSKRRLEKLRCNLDRLHLYAEDII-------EMDAFDYCPKKLF--------DAVLVDAP 315 SK +L K++ N +RL+L ++ D D +L+D P Sbjct: 236 KSKSKLHKIKSNAERLNLSCIEVFAFDSTKAVADICQCQEGLRCPPFALESFDRILLDPP 295 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS G + P + + ++ +C+QRKLL Q +K GGI+V+ C+L ++E Sbjct: 296 CSGMG---QRPCLAYKMSAKELRSYSCYQRKLLSQAFQLLKVGGILVYCTCTLTLSENER 352 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 + L + P +EL + L+ + Sbjct: 353 NISWALSNYP-ELELCNQSPYLGCPGIQVEGLNKD 386 >gi|301097830|ref|XP_002898009.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262106454|gb|EEY64506.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 497 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 62/270 (22%), Positives = 115/270 (42%), Gaps = 55/270 (20%) Query: 217 GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSK 273 G G +VQ+ S+ + +LD+CAAPGGKT+ + + + + A D SK Sbjct: 222 GVLRGQIYVQNLPCSVVAHVLDPQQGDVILDMCAAPGGKTSHVATLMRNTGTLVACDRSK 281 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDY-------------------------------- 301 R+ +LR + LHL + ++MD+ Sbjct: 282 RKALELRTLCEDLHLECVEPLKMDSTHALLPKDKVDAAPRDGDFTSVAQVLARAKQSTPR 341 Query: 302 ---------CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + FD +L+D PCS+ G P +L D D++ + QR L Sbjct: 342 QTRLLQVEGFYLETFDRILLDPPCSALGL---RPRLLHAGDADNLAEYTNMQRNFLWVAA 398 Query: 353 SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW 412 +KPGG +V+S C+++ +++E++V L++ P ++LV A+ ++ E Sbjct: 399 FLLKPGGTLVYSTCTINPKENEQMVHHALQNYP--LKLVSQGDAHLGDHGLSGQGLNEEE 456 Query: 413 IRITPDMLEKIDGVSSGMD--GFFAVALRR 440 + + +++ D ++ +D GFF + Sbjct: 457 VAL----VQRFDPANTELDTMGFFCAKFVK 482 >gi|171184492|ref|YP_001793411.1| PUA domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170933704|gb|ACB38965.1| PUA domain containing protein [Thermoproteus neutrophilus V24Sta] Length = 375 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 29/233 (12%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271 I LP + +G+++ Q A + + +DL AAPGGK L +V A D Sbjct: 167 IRDLPEYRDGLFYSQSLPAIAVGHVAKRAGAATAVDLNAAPGGKATHLAQMDMRVVAFDR 226 Query: 272 SKRRLEKLRCNLDRLHLY-AEDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 S ++E+L+ ++RL L D+I D+ P+ D LVD PC+ G P Sbjct: 227 SWPKIERLKREVERLGLAGNIDVILHDSRYVDRDFPRLRADLALVDPPCTDIGV---RPK 283 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + + +Q + L +K V++S C+L ++E+VV+K Sbjct: 284 IYHRVTMEMAKTLSRYQLQFLKTA---LKIASNVIYSTCTLTYIENEDVVKK-------- 332 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + PE R P + GFF L R Sbjct: 333 --SGAVPADVGLDVGGPGWGCPE-CRRFLPHV--------HDTPGFFIALLSR 374 >gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica OS155] gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens CN-32] gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica OS185] gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica OS195] gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica OS223] gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183] gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175] gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155] gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32] gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185] gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195] gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223] gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183] gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175] gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678] gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200] Length = 134 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + L D R + + Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFSGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++ L + + ++R++ ++ + DV ++ A+E AK + Sbjct: 58 KKTQLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGAD 117 Query: 118 RHFA 121 Sbjct: 118 ESHK 121 >gi|296242733|ref|YP_003650220.1| Fmu (Sun) domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095317|gb|ADG91268.1| Fmu (Sun) domain protein [Thermosphaera aggregans DSM 11486] Length = 382 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 23/237 (9%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTA 268 I L + +G+ + Q A + V DL A+PGGKT ++ +++ A Sbjct: 160 INELSVYRKGLIYPQGLPAMVTTLFLNPREGDLVADLNASPGGKTGHVVQYTKGKSRIIA 219 Query: 269 LDVSKRRLEKLRCNLDRLHLY-AEDIIEMD----AFDYCPKKLFDAVLVDAPCSSTGTIR 323 D + ++E L+ NL++L L I D D+ + + VL+D PCS+ G Sbjct: 220 FDRNTPKIEVLKTNLEKLGLNINVLAIPYDSRYAHLDFNLNEKVNKVLIDPPCSNLGV-- 277 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 P + + + DI+ +A +Q++ L S +K GGI V+S C+L +++EEVV ++ Sbjct: 278 -RPKLTFDKTLTDILNNANYQKQFLKTAYSILKKGGIAVYSTCTLTLRENEEVVSYAVKE 336 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + R P ++S M G+F L++ Sbjct: 337 LGFESVEADSRFSRLDKVYFEDIV----GYRFHP--------LNSDMPGYFIALLKK 381 >gi|119495090|ref|XP_001264338.1| methyltransferase (Ncl1), putative [Neosartorya fischeri NRRL 181] gi|119412500|gb|EAW22441.1| methyltransferase (Ncl1), putative [Neosartorya fischeri NRRL 181] Length = 886 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL + DA Y + FD Sbjct: 223 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 282 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 283 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 342 Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392 ++E VV + VE++ Sbjct: 343 PVENEAVVASAITRCGGSANVEILDCSNELPGLKRADGVRTWKVMDREGRMYNSWEEVEE 402 Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L E IR+ P + + GFF L + Sbjct: 403 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 454 Query: 441 L----IQPK 445 +P+ Sbjct: 455 KSEIRAKPE 463 >gi|44890014|emb|CAF32132.1| possible NOL1/NOP2/SUN family protein [Aspergillus fumigatus] Length = 934 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 76/249 (30%), Gaps = 78/249 (31%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL + DA Y + FD Sbjct: 219 IANDSDFKRAHMLVHQMKRLSSPNLIVTNHDATMYPSIRLPPLPEQDGKPQKNRYLKFDR 278 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PC+ GT R++ V + + Q ++L++ + +K GG VV+S CS++ Sbjct: 279 ILADVPCTGDGTARKNISVWREWGPANALGLHATQVRILVRALQMLKVGGRVVYSTCSMN 338 Query: 370 KQDSEEVVQKVLRSSPI--PVELVP----------------------------------- 392 ++E VV + VE++ Sbjct: 339 PVENEAVVASAISRCGGSANVEILDCSNELPGLKRAAGVRTWKVMDREGRMYNSWKEVEE 398 Query: 393 ------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L E IR+ P + + GFF L + Sbjct: 399 QREREGINGLGRIGEGMFPPTGENADLPLERCIRVYPHLQD--------TGGFFITVLEK 450 Query: 441 L----IQPK 445 +P+ Sbjct: 451 KSEIRAKPE 459 >gi|325114098|emb|CBZ49656.1| nol1/NOP2/sun family methyltransferase, related [Neospora caninum Liverpool] Length = 1010 Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 84/252 (33%), Gaps = 46/252 (18%) Query: 184 FDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASI 232 E +L + G + GF Q+A + + Sbjct: 179 TGPEETLQRLPWMPHEIGWQWSTVCKIRLRRDEGFRRIRRHIMNEDFRGGLSRQEAVSML 238 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-------------------------VT 267 P ++D+CA+PG KT Q++ V Sbjct: 239 PALFLDVRPEHRIMDMCASPGSKTTQILDMMQWGAVNSLSQGDADSPALPGLEPPTGFVI 298 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----------FDAVLVDAPCS 317 A D+ +R + L ++ A I DA + FD +L D PCS Sbjct: 299 ANDIDAQRTQTLAHQCMKVPSAAIAISCSDASFFPLTLPDGPTGETRLQFDRILADVPCS 358 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 GT+R++ D+ V Q +L +G+ ++ GG +V+S CSL + E V+ Sbjct: 359 GDGTMRKNGDLWRKWSATGSVSLHSIQLGILHRGLQLLRVGGRLVYSTCSLSPLEDEAVI 418 Query: 378 QKVLRSSPIPVE 389 L +E Sbjct: 419 AAALLQYGDAIE 430 >gi|295671506|ref|XP_002796300.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Paracoccidioides brasiliensis Pb01] gi|226284433|gb|EEH39999.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Paracoccidioides brasiliensis Pb01] Length = 906 Score = 99.6 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-----------------LFDA 309 A D +R L + RL+ + DA Y K FD Sbjct: 274 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSIKLPSLPPPEGKPVRNRYLKFDR 333 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 334 ILADVPCSGDGTSRKNVNVWKDWNPSNALGLHTTQCRILTRALQMLKVGGRVVYSTCSMN 393 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRITPD------ 418 ++E V+ V+ P V ++ ++ + + + RI + Sbjct: 394 PVENEAVIASVIDRCGGPSKVHIMDCSNELPTLKRFPGLKSWSVMDKQGRIWANWKDVED 453 Query: 419 ----------------------------MLEKIDGVSSGMDGFFAVALRR----LIQPK 445 +I FF L + +P+ Sbjct: 454 AVSQGDETLSRMVEGMFSPSEEEGIDLSRCMRIYPHQQDTGAFFITVLEKRSDIKARPE 512 >gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis HAW-EB4] gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4] Length = 135 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + D R ++ Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQDVAGV---DIAYFRELLGGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++ L L + ++R++ ++ + DV ++ A+E AK Sbjct: 58 KKSQLDELITPFLTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|332299991|ref|YP_004441912.1| Fmu (Sun) domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177054|gb|AEE12744.1| Fmu (Sun) domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 461 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 130/313 (41%), Gaps = 31/313 (9%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-----TWAHKLNAVML 198 + +P + +L+ Y E I +A + + L + + A+ Sbjct: 1 MHTPVPSELRAKLQLDYP-EHAARIVEALETLPTVSLRLNPARTLTTPPHAELRDGAIPW 59 Query: 199 PTGGIRLKELPESIV--SLPGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAP 252 + L E P + G ++VQDASA ++ L+ + LDLCAAP Sbjct: 60 LPAELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWERLDWHTAPRLALDLCAAP 119 Query: 253 GGK---TAQLIVSGAKVTALDVSKRRLEKLRCN-LDRLHLYAEDIIEMDAFDYCP--KKL 306 GGK L+ + + ++ +R + L N + I + D P + Sbjct: 120 GGKSTLLRDLLPEETLLVSNEILPKRCKILVENLVKWCGADQMIITQEDPQQLTPLLRGA 179 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 D +LVDAPCS G +RR + + QR +L + + + P GI++++ C Sbjct: 180 CDLILVDAPCSGEGLMRRDEEARRMWSPQLVSDCVTRQRAILQEAMRMLAPEGILLYATC 239 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 +L++++++++VQ +L P EL+ L+ + + +A A + + + P ++ Sbjct: 240 TLNQEENDQMVQWLLDHYPC--ELIDLSRSAER---IAGAYATSYGLHLWPGIVRGEGQ- 293 Query: 427 SSGMDGFFAVALR 439 + ALR Sbjct: 294 -------YLAALR 299 >gi|311029972|ref|ZP_07708062.1| sun protein [Bacillus sp. m3-13] Length = 126 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R ++ L V +K+ LL+ LS++D L IV T++ Sbjct: 1 MK---NVRELALEALLNVEKKQAYSNLLLNNYLDSGK---LSKKDAGLFTEIVYGTIQRT 54 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 +D L + + + ++ LL++++ Q+LYLD V A + AVE AK+ + Sbjct: 55 ITLDYYLASYIEKQ-KKLQDWVKVLLKMTLYQMLYLDKVPARAAIYEAVEIAKKRR 109 >gi|242005991|ref|XP_002423843.1| williams-beuren syndrome critical region protein, putative [Pediculus humanus corporis] gi|212507059|gb|EEB11105.1| williams-beuren syndrome critical region protein, putative [Pediculus humanus corporis] Length = 503 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 23/247 (9%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVS 272 + G +QD ++ +P L N LD+CAAPG KT ++ + V A ++ Sbjct: 258 ELYQNGSILLQDKASCLPAFLLKPTPNSIALDMCAAPGMKTTHLSAIMRNKGTVYASEMD 317 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMD---------AFDYCPKKLFDAVLVDAPCSSTGTIR 323 R + L + + +D K + +LVD CS +G + Sbjct: 318 PNRYQVLCDLIKNSGCNNVITLNIDALKLNADANDSQMEWCKDVEYILVDPSCSGSGIVD 377 Query: 324 R-HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R + ++ I K FQ KLLL ++ VV+S CS+ +++E++V+ VL Sbjct: 378 RMNIFEGEKKNNKRIKKLCGFQFKLLLHALTKFPNAKRVVYSTCSVLAEENEKIVEDVLA 437 Query: 383 SSPIPVELVPLNSAYWKSIDMAM-ALSPEGWIR----ITPD--MLEKIDGVSSGMDGFFA 435 E P + ++ + + WIR P D +GFF Sbjct: 438 KLN---ESTPDDEGNENFLNFNLVEPLKDVWIRRGSDRYPHGKYCIFSDPEHDLTNGFFI 494 Query: 436 VALRRLI 442 R + Sbjct: 495 AVFERTV 501 >gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina NK-01] gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina NK-01] Length = 159 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR ++ L L + D+ F S+ D I++ R Sbjct: 20 ARREARTLAMQALYSWHIAGQPLNEIEAQFRVDNDF---SKVDGAYFHEILHGVPRQKTE 76 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 +D +L L +LR+S ++ +DV V++ +E AK Sbjct: 77 LDGAFTPLLDRPLEEIDPVELAILRLSTYELKNRVDVPYKVVINEGIELAKVFGATDG-H 135 Query: 122 KLVNSILRR 130 K VN IL + Sbjct: 136 KFVNGILDK 144 >gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis MR-1] gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1] Length = 134 Score = 99.6 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 42/124 (33%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + L D R + Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFAGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++ L + + ++R++ ++ + DV ++ A+E AK + Sbjct: 58 KKTQLDELIIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGAD 117 Query: 118 RHFA 121 Sbjct: 118 ESHK 121 >gi|24668781|ref|NP_730761.1| CG11109, isoform B [Drosophila melanogaster] gi|23094335|gb|AAN12208.1| CG11109, isoform B [Drosophila melanogaster] gi|209417956|gb|ACI46516.1| FI01826p [Drosophila melanogaster] Length = 439 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 24/234 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + + V ALD S R+ + Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271 Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + P + FD +L+DAPCS G R Sbjct: 272 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + V+PGGI+V+S C++ + + E +V LR + Sbjct: 330 SCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF-VE 388 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L W + + R+ G ++ GFF +++ Sbjct: 389 LRLTDATPR-WGGPGLPLPGFEACKSRLL--QRFGPSGANADTVGFFIAKFQKI 439 >gi|21356513|ref|NP_649425.1| CG11109, isoform A [Drosophila melanogaster] gi|7296593|gb|AAF51875.1| CG11109, isoform A [Drosophila melanogaster] gi|16768466|gb|AAL28452.1| GM05221p [Drosophila melanogaster] gi|220943156|gb|ACL84121.1| CG11109-PA [synthetic construct] gi|220953252|gb|ACL89169.1| CG11109-PA [synthetic construct] Length = 358 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 24/234 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + + V ALD S R+ + Sbjct: 131 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 190 Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + P + FD +L+DAPCS G R Sbjct: 191 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 248 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + V+PGGI+V+S C++ + + E +V LR + Sbjct: 249 SCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF-VE 307 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L W + + R+ G ++ GFF +++ Sbjct: 308 LRLTDATPR-WGGPGLPLPGFEACKSRLL--QRFGPSGANADTVGFFIAKFQKI 358 >gi|269862221|ref|XP_002650752.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon bieneusi H348] gi|220065670|gb|EED43304.1| multisite-specific tRNA m(5)C methyltransferase [Enterocytozoon bieneusi H348] Length = 338 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 34/165 (20%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 K FD + D PCS GT+R++ + + Q K+L + +S +K GGI+ + Sbjct: 3 KNFFDRICCDVPCSGDGTVRKNMSIFNDWSVKRACQLIDLQIKILQRSLSTLKEGGILTY 62 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM------------------ 405 S CSL+ ++E V+ + L + P ++P + S Sbjct: 63 STCSLNPLENEYVINRALLNFPNCKIILPQEAFNLVSYTKDKTKLMIRKGIPFFQYTIDS 122 Query: 406 ------ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 E IRI P + GFF +++ QP Sbjct: 123 KRYEYNDYELEKCIRIYPHD--------NDTGGFFIAIIQK--QP 157 >gi|302665742|ref|XP_003024478.1| hypothetical protein TRV_01308 [Trichophyton verrucosum HKI 0517] gi|291188535|gb|EFE43867.1| hypothetical protein TRV_01308 [Trichophyton verrucosum HKI 0517] Length = 854 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 60/238 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310 A D +R L + RL+ + DA Y K FD + Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++ ++ + + + Q ++L + + +K GG VV+S CS++ Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359 Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMA-----------------MALSPEG 411 ++E ++ V+ VE+V + + A + E Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCENQLPELKRRPGLKTWKIMDKTGRIYENWAEAEEE 419 Query: 412 WIRITP---------------------DMLEKIDGVSSGMDGFFAVALRR----LIQP 444 ++ P ++ GFF L + ++P Sbjct: 420 VRKLNPAASRLVEGMFPPSGDADVGDLTRCMRVYPHMQDTGGFFITVLEKKREIKVKP 477 >gi|213408467|ref|XP_002175004.1| NOL1/NOP2/Sun domain family member 5B [Schizosaccharomyces japonicus yFS275] gi|212003051|gb|EEB08711.1| NOL1/NOP2/Sun domain family member 5B [Schizosaccharomyces japonicus yFS275] Length = 465 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 86/450 (19%), Positives = 152/450 (33%), Gaps = 59/450 (13%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ +L + ++ S+ L + + F D A+V TL++ +D V++ Sbjct: 7 AAGVLDDLKERKGSIKQL---AFKNKKF------DPKRTYALVCETLKYTKVLDEVIER- 56 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L ++K + L V V +L + + + + N F K Sbjct: 57 -SELLKKEKKLTRNLAIVLVHDLLLTKRGIQASGGLYKDAILRNKTRLNGEFVKYKIQKG 115 Query: 129 RRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET 188 + + E +P W + +E + + + I+ Sbjct: 116 AKSNEELALKNPVN-----LPRWVRVNTILSNKEEVIKGLG----------VEPVDSIDA 160 Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQ--LFGTLNNLSVL 246 + E S V + +G +QD ++ P ++ Sbjct: 161 LVPGKVYFDDCVENLLALESNISFVGNELYEKGKIIIQDKASCFPAAVLHGMPGPVGDII 220 Query: 247 DLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-- 302 D CAAPG KT L AK+ A + R++ L+ + +I MD Sbjct: 221 DGCAAPGNKTTHLAALYPNAKIFAFERDAYRVKTLQKMVRISGAKNVEIQHMDFTHTDVH 280 Query: 303 --PKKLFDAVLVDAPCSSTGTIRRHPDVLWT-RDTDD----IVKSACFQRKLLLQGISFV 355 +L+D CS +G + R +L +D D + FQ +L +SF Sbjct: 281 DEKYANVTHILLDPSCSGSGIVSRQDFLLVNEQDPVDEGDRKENLSKFQSTILKHALSF- 339 Query: 356 KPGGIVV-FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA------MALS 408 P V +S CS+ ++++E+VV +VL+ PL S + D Sbjct: 340 -PNVRNVTYSTCSVHREENEQVVDEVLKQEKDW-SCAPLESTLPQWPDRGVPEYCSDPSM 397 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 G IR P G GFF L Sbjct: 398 AGGMIRCEPGRY--------GTIGFFVANL 419 >gi|321398527|emb|CBZ08879.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 634 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 95/271 (35%), Gaps = 52/271 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------LIVSGAKVTALDVSK 273 G Q+ + +P L + VLD+CAAPG KT+Q V A D Sbjct: 130 GYLTRQETVSMLPPLLLQVGPGMRVLDMCAAPGSKTSQLLELLLTGESERGVVVANDAKA 189 Query: 274 RRLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 RL+ L +R HL + P + FD VL D CS GT+R+ D+ Sbjct: 190 SRLDVLHHQTNRAAGAHLHLIITNTDATRFPLLPPAERFDRVLCDVMCSGDGTLRKSIDM 249 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D+ Q ++LL+G++ K GGIVV+S CSL+ + E VV L + Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTKGTF 309 Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420 EL+ A + + P M Sbjct: 310 ELIDPTPLLHGLCASPGMTSWTVTTRDLTTALHNYEDAKAFMEAQTDRCTFQYAPSMFAN 369 Query: 421 ------------EKIDGVSSGMDGFFAVALR 439 +I + GFF ALR Sbjct: 370 TELLVDQHIERTRRILPHTQDTGGFFVAALR 400 >gi|50550307|ref|XP_502626.1| YALI0D09691p [Yarrowia lipolytica] gi|49648494|emb|CAG80814.1| YALI0D09691p [Yarrowia lipolytica] Length = 506 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 133/429 (31%), Gaps = 47/429 (10%) Query: 44 RDQILVRAIVNVTLRFLPRIDAVLD----FVLISSLPRKKYSLQQLLRVSVAQILYLDVA 99 D V A+V L++ P + ++ + K +L +L Sbjct: 37 ADPKHVFAVVFSALKYRPFLVDIIKAAEIPISDKPGKTKITMNMAILM--AHDLLCSRSK 94 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLV--NSILRRVSREKIELLQRIAGISIIPEWFKERLE 157 +K ++ A S L + + R+ Sbjct: 95 RLT-------ISKGPLKDMFLAHQTRLKSELTKFKLKHKVSDLDELVEEDSTPIRWIRIN 147 Query: 158 NFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK--ELPESIVSL 215 E + +PL L IE + + L E + + Sbjct: 148 TVLSNEE-----EFHKTPLIARLKPIDKIEGGTIQPGQIYKDIHVPHLYGIHPREKLANC 202 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDV 271 + +G +QD ++ P + ++D C+APG KT L + A + Sbjct: 203 ELYKQGKIIIQDRASCFPATILNPQPGQKLIDCCSAPGNKTTHLASFVAGTPGSIDAFEK 262 Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRRHP-- 326 R + L + + + D D P + +LVD CS +G R Sbjct: 263 DAIRAKLLTKMVKTAGCHNCIKVNVGDFTDTNPDDYPEVEGILVDPSCSGSGIFGRKHED 322 Query: 327 --------DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 + +D + K + FQ +++ + VV+S CS+ ++EEVVQ Sbjct: 323 DAAAAEETNRDDQKDQFRLHKLSEFQYRIVKHAL-LFGSAKKVVYSTCSIHNIENEEVVQ 381 Query: 379 KVLRSSPIPVE-------LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 K+L S + E L L + + PE + + + G Sbjct: 382 KLLLDSQVAAEGWQLAPKLRVLPLWTRRGDPNGFSDFPENQRAALAEGVVRALPKVDGGI 441 Query: 432 GFFAVALRR 440 GFFA + Sbjct: 442 GFFAACFEK 450 >gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. 168] gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. JH642] gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. SMY] gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis subsp. subtilis str. 168] gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5] gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp. subtilis str. 168] gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis subsp. natto BEST195] gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5] Length = 131 Score = 99.6 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I++ ++ + +V+ L Sbjct: 1 MKRRT-AREKALQALFQIDVSDIAVNEAIEHALDEEKTD-------PFFEQLVHGVLEHQ 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR++ ++ Y D+ ++ A+E AKR + Sbjct: 53 DQLDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF-GDD 111 Query: 119 HFAKLVNSILRR 130 K VN +L Sbjct: 112 KATKFVNGVLSN 123 >gi|118573084|sp|Q63ZY6|NSN5C_HUMAN RecName: Full=Putative methyltransferase NSUN5C; AltName: Full=NOL1/NOP2/Sun domain family member 5C; AltName: Full=Williams-Beuren syndrome chromosomal region 20C protein Length = 315 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 23/251 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L KT+ L Sbjct: 6 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317 + K+ A D+ RRL + L + ++ E D P VL+D CS Sbjct: 66 NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125 Query: 318 STGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R + T + A FQ++ L ++F ++ +V+S CSL ++++ Sbjct: 126 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEEN 182 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E++VQ L+ +P L P A ++ E +R +P GF Sbjct: 183 EDMVQDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GF 233 Query: 434 FAVALRRLIQP 444 F + R+ P Sbjct: 234 FVAVIERVEMP 244 >gi|127799886|gb|AAH82753.2| NOL1/NOP2/Sun domain family, member 5C [Homo sapiens] Length = 315 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 23/251 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L KT+ L Sbjct: 6 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317 + K+ A D+ RRL + L + ++ E D P VL+D CS Sbjct: 66 NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125 Query: 318 STGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R + T + A FQ++ L ++F ++ +V+S CSL ++++ Sbjct: 126 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEEN 182 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E++VQ L+ +P L P A ++ E +R +P GF Sbjct: 183 EDMVQDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GF 233 Query: 434 FAVALRRLIQP 444 F + R+ P Sbjct: 234 FVAVIERVEMP 244 >gi|299472192|emb|CBN79695.1| conserved unknown protein [Ectocarpus siliculosus] Length = 765 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 85/235 (36%), Gaps = 42/235 (17%) Query: 218 FAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA------------- 264 G Q+A + +P VLD+CAAPG KTAQL+ + Sbjct: 1 MESGNITRQEAVSMLPPLFLDVQPKHLVLDMCAAPGSKTAQLMEMVSAPSATAAAAGGGG 60 Query: 265 -----------KVTALDVSKRRLEKLRCNLDRLHLYAEDII-----------EMDAFDYC 302 V A D + R L R+ A I A Sbjct: 61 GGDGGPDGEVGLVVANDSDRDRAYMLAHQCKRVQSPAICITWCSAQSLPNLGAAGAERGS 120 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 K +FD VL D PCS GT+R+ P + T + Q + L+G + +K GG +V Sbjct: 121 DKGVFDRVLADVPCSGDGTLRKQPAIWRTWTVAGGLGLHPLQLLITLRGAAMLKIGGKMV 180 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 +S CSL+ + E VV +VLR +EL S + P Sbjct: 181 YSTCSLNPIEDEAVVAEVLRRCGGNLELEDCRSTLPGLKTRP-------GLHTWP 228 Score = 43.7 bits (101), Expect = 0.062, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%) Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E+ ++ LR P E+ + +R+ + ++ GF Sbjct: 317 EDAIKAGLRHHPSFAEVDTATTRKMIPSFFPPDEDKAKALRL--ERCMRMLPQDQDTGGF 374 Query: 434 FAVALRR 440 F + + Sbjct: 375 FVAVMVK 381 >gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603] Length = 138 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 6/135 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + ++L ++ +S +LD+ D + +V + Sbjct: 1 MAARSKARKRAVNILYEADQRNLSAAQVLDIRLADPGVPSALPQ---YAVDLVEGVILHR 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L+ L R + +LR+ ++LY DV D +D AV+ A+ Sbjct: 58 ERIDEILETYSRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVDLARE-LSTE 116 Query: 119 HFAKLVNSILRRVSR 133 VN +L RV Sbjct: 117 DSPSFVNGLLGRVMD 131 >gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR] gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR] Length = 139 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 7/143 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + S + + ++ S+ D +V Sbjct: 1 MKPAARRKARKLAVQAIYSWQLSQNSFSDIEAQFLTENDT---SKVDVDYFLELVRGVGG 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +D L+ L + +LR++ ++ +DV ++ A+E AK + Sbjct: 58 HYRTLDEALEPFLDRPIKELDPIELAVLRLAAYELRERVDVPYKVAINEAIELAKSFGAD 117 Query: 118 RHFAKLVNSILRRVSREKIELLQ 140 + VN +L + Q Sbjct: 118 ES-HRFVNGVLDKAVDTFRPTRQ 139 >gi|16226075|gb|AAL16068.1|AF420250_1 NOL1R2 [Homo sapiens] gi|10432924|dbj|BAB13875.1| unnamed protein product [Homo sapiens] Length = 315 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 93/251 (37%), Gaps = 23/251 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L KT+ L Sbjct: 6 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRRAPMSWMPVPPQAIKTSHLAALLK 65 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317 + K+ A D+ RRL + L + ++ E D P VL+D CS Sbjct: 66 NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125 Query: 318 STGTIRRH--PDVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDS 373 +G R T + A FQ++ L ++F ++ +V+S CSL ++++ Sbjct: 126 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEEN 182 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 E++VQ L+ +P L P A ++ E +R +P GF Sbjct: 183 EDMVQDALQQNPDAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GF 233 Query: 434 FAVALRRLIQP 444 F + R+ P Sbjct: 234 FVAVIERVEMP 244 >gi|193700064|ref|XP_001946119.1| PREDICTED: putative methyltransferase NSUN5-like [Acyrthosiphon pisum] Length = 459 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 17/244 (6%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + + + G VQD ++ + L +N +VLD+CAAPG KT+ ++ Sbjct: 67 VFNSKVKFYEIEEYNNGSLIVQDKASCLAAYLLNPKSNSTVLDMCAAPGMKTSHLAAIMQ 126 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 + K+ A+D SK R L+ L++ + + MDA + +L+D CS +G Sbjct: 127 NTGKLYAVDRSKERFYILQNMLEKYGVQNVETFNMDALTFPYYDDVKYILLDPSCSGSGI 186 Query: 322 IRRHPDVLWTRDTDDI---VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 + R + ++ + K A +LL + +V+S CS + +++E VV Sbjct: 187 VDRVRNDSSGQNQNFQTRLKKLANVHAQLLNHALKSYPNLERLVYSTCSANHEENEAVVD 246 Query: 379 KVLRSSPIPVELVPLNS--AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + L + +L+ W + E + +GFF Sbjct: 247 EALSIN-GKFKLLDCTKMVKGWTNKGAPGYDCSEMCL--------NAVPSVDCTNGFFIS 297 Query: 437 ALRR 440 R Sbjct: 298 VFVR 301 >gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum DSM 5159] gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum DSM 5159] Length = 168 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR+++ +L V SL +L+ + ++Q + +V RI Sbjct: 34 RRQARILALQILYEVDVANHSLEEVLE---RHRSQASIAQPVRRYAERLVTGVWADRERI 90 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 D ++ + + + + +LR+++ ++L+ DV A ++ AVE AK+ + Sbjct: 91 DRMIAEAAPAFPVDQLPPVDRNILRIAIYELLHEPDVPLKAAINEAVEIAKQY-GGESSS 149 Query: 122 KLVNSILRR 130 + VN +L Sbjct: 150 RFVNGVLGT 158 >gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella piezotolerans WP3] gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3] Length = 135 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + + D R ++ Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QNVDGVDIAYFRELLGGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++ L+ + + ++R++ ++ + DV ++ A+E AK Sbjct: 58 KKSQLDELITPFLVRPMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|195496828|ref|XP_002095858.1| GE22645 [Drosophila yakuba] gi|194181959|gb|EDW95570.1| GE22645 [Drosophila yakuba] Length = 440 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 28/236 (11%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + I G V ALD S R+ + Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELIGDGGSVVALDNSASRVRSMLLK 271 Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + + P FD +L+DAPCS G R Sbjct: 272 LKHYKSITAHVFDSTKALAPEAPSAPFGEFTAPPFPCASFDRILIDAPCS--GLGNRPQL 329 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + ++PGGI+V+S C++ + + E +V L+ P Sbjct: 330 SCSIKQAKVLSSYPNIQRRLFEQAVPLLRPGGILVYSTCTVTEDECECIVAWALKKFPEL 389 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVALRRL 441 + + + + R+ ++ + D GFF + Sbjct: 390 HLTDATPRWGGSGLPLPGFATCKS--RLL----QRFGPTGANADTVGFFIAKFHKK 439 >gi|46805843|dbj|BAD17177.1| putative Williams Beuren syndrome critical region 20A isoform 1 [Oryza sativa Japonica Group] Length = 472 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 27/234 (11%) Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRC 281 + ++ + V+D CAAPG KT L + +TA +++K R + L+ Sbjct: 198 HKGKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQN 257 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVL---WTRDT 334 + R + I D D A+L+D CS +G D L +R Sbjct: 258 TIRRSGANNIETINGDFLDIDSNDPSYAEVRAILLDPSCSGSGISTERLDHLLPSHSRGN 317 Query: 335 DDIV-------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 D K + FQRK L +SF VV+S CS+ + ++E+VV VL + Sbjct: 318 QDDASTSSRIRKLSAFQRKALSHALSFPSVE-RVVYSTCSIHQAENEDVVSSVLPLASSL 376 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + W+ + + E +R P G++GFF R Sbjct: 377 GFELATPFPQWRRRGLPVFEGSEHLLRTDP---------EDGLEGFFISLFVRK 421 >gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis SB2B] gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B] Length = 134 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + L D R + Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTE---QELDGVDVAYFRELFAGAAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D L +L L + +LR++V ++ + DV V++ A+E AK Sbjct: 58 KTAQLDEKLKPLLDRPLEEVSPVEKAILRLAVYELTFRKDVPYKVVINEAIELAKSF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|297526090|ref|YP_003668114.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] gi|297255006|gb|ADI31215.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710] Length = 383 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 24/239 (10%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVT 267 I L + G+++ Q A ++ + D+ AAPGGKT+ LI ++V Sbjct: 161 PIRDLEEYDLGLFYPQSLPAMTVSRILDPQPGELIFDMNAAPGGKTSHLIQLSRGRSRVV 220 Query: 268 ALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTI 322 A + + ++ K+ L RL L I+ MD+ + D VL+D PC+ G Sbjct: 221 AFERNVKKALKVYSTLKRLRLLRNIIILPMDSRYVHLDLDASEKVDKVLIDPPCTGLGV- 279 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 P + +D V + +QR+ L V GI+V+S C+L +++EE + +R Sbjct: 280 --RPKIEIDIKGEDTVVLSKYQRQFLNAASMIVARKGIIVYSTCTLTWEENEENIIYAVR 337 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + +E + L + + + + + M GFF LRR Sbjct: 338 K--LGLETIDLGKIPYADKIYYRDI-----------IAYRFSPLGYDMPGFFVAVLRRK 383 >gi|168028404|ref|XP_001766718.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682150|gb|EDQ68571.1| predicted protein [Physcomitrella patens subsp. patens] Length = 504 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 101/262 (38%), Gaps = 43/262 (16%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + P G +Q ++ +P Q + VLD CAAPG KT L + K+T Sbjct: 199 DLHKHPLVLNGSIVLQGKASCMPAQALSPACDWEVLDACAAPGNKTVHLAALMAGRGKIT 258 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF------------------DYCPKKLFDA 309 A +++++R ++L+ + I E D Sbjct: 259 ACEINEKRAQRLQETVRLTGATNFQIAETDFPELDVDVTVRQQDFLTIDPTLPEFTKVRG 318 Query: 310 VLVDAPCSSTGTIRRHPDVL---------WTRDTDDIVKSACFQRKLLLQGISF--VKPG 358 +L+D CS +GT + D L ++ D I + A FQ LL +SF ++ Sbjct: 319 ILLDPSCSGSGTTVQRLDHLLPSAGTDKNDDQEKDRIEQLARFQETALLHALSFPSLEK- 377 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD 418 +V+S CS+ ++++E+VV VL + + W + + + IR Sbjct: 378 --LVYSTCSIHQRENEDVVLAVLPHAKEKGFELSNPFPSWPHRGLPVFEGADLLIRT--- 432 Query: 419 MLEKIDGVSSGMDGFFAVALRR 440 D + MDGFF R Sbjct: 433 -----DALRDKMDGFFVALFVR 449 >gi|326475252|gb|EGD99261.1| methyltransferase [Trichophyton tonsurans CBS 112818] Length = 854 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 60/238 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310 A D +R L + RL+ + DA Y K FD + Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGHPAKNRYLKFDRI 299 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 + D PCS GT R++ ++ + + + Q ++L + + +K GG VV+S CS++ Sbjct: 300 IADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359 Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMA-----------------MALSPEG 411 ++E ++ V+ VE+V + + A + E Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCENQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419 Query: 412 WIRITP---------------------DMLEKIDGVSSGMDGFFAVALRR----LIQP 444 ++ P ++ GFF L + ++P Sbjct: 420 VRKLNPAASRLVEGMFPPSRDADVGDLTRCMRVYPHMQDTGGFFITVLEKKREIKVKP 477 >gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC 2396] gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC 2396] Length = 149 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ AR ++ L S++ + D+ + + D+ L +A++ + Sbjct: 5 MEKRRAARKLALQALYQWRVAGASISQIEAEFAVDNDLQQV---DRDLFKAVLYGVPSSV 61 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119 +DA+L + L L+R+ ++ ++V V++ AVE AK+ Sbjct: 62 SELDALLQPFVDRKLTDVDPVELSLIRMGAFELRSRIEVPYRVVINEAVELAKQFGGTDG 121 Query: 120 FA 121 Sbjct: 122 HK 123 >gi|195441370|ref|XP_002068484.1| GK20395 [Drosophila willistoni] gi|194164569|gb|EDW79470.1| GK20395 [Drosophila willistoni] Length = 457 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 13/212 (6%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTA 268 + SL ++ +Q+ + + V++ VLD+CAAPG KT+ + + + A Sbjct: 205 VPSLGDLSDAYGLLQNLPSMVCVRVLNPQPGDRVLDMCAAPGNKTSHIAELMRDQGVLVA 264 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDII--------EMDAFDYCPKKL--FDAVLVDAPCSS 318 LD SK R++ ++ + + D + P FD +L+DAPCS Sbjct: 265 LDNSKSRIKAMQSRIGHYKCIQSHVFDSTKALAEHNDQHNDPPFSSASFDRILLDAPCSG 324 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G + + D+ QR+L Q + ++PGG +V+S C++ + + EE+V+ Sbjct: 325 IGNRPQLSCASQLKTAKDLKSYPNIQRRLFGQAVHLLRPGGTLVYSTCTVTEAECEEIVE 384 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 LR P L + + + + Sbjct: 385 WALRKFPEIHLLDAVPRLGHSGLSLPNFDQDQ 416 >gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15] Length = 158 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + +++ + D+ +S+ D + R ++ R +D + Sbjct: 25 ARALAMQGLYQRHFSKTAISDIEAEFMVDN---DMSKVDLLYFRDLLRGVHREQGELDKL 81 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 ++ L + ++R+ ++ + LDV V++ +E AKR Sbjct: 82 IEPFLDRPIKEVDPVELAIVRLGAYELKHRLDVPYKVVINEGIEMAKRFGGTEGHK 137 >gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii str. W23] gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis subsp. spizizenii str. W23] Length = 131 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I++ ++ + +V+ L Sbjct: 1 MKRRT-AREKALQALFQIDVSDIAVNEAIEHALDEEKTD-------PFFEQLVHGVLEHQ 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR++ ++ Y D+ ++ A+E AKR + Sbjct: 53 VQLDEMISKHLVNWKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELAKRF-GDD 111 Query: 119 HFAKLVNSILRR 130 K VN +L Sbjct: 112 KATKFVNGVLSN 123 >gi|212703679|ref|ZP_03311807.1| hypothetical protein DESPIG_01725 [Desulfovibrio piger ATCC 29098] gi|212672912|gb|EEB33395.1| hypothetical protein DESPIG_01725 [Desulfovibrio piger ATCC 29098] Length = 276 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 16/259 (6%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 + ++ RL P + S G ++QD S+ +P +V Sbjct: 8 LRAQGYEFEPEPFSPFCRRLLCEPRPLGSSLAAFFGYIYIQDRSSMLPPLALAPRQGEAV 67 Query: 246 LDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD+CA+PG KT L V ++S+ RL LR NL +L + Sbjct: 68 LDMCASPGSKTGFLGQLTGPEGFVLGNELSRARLATLRANLHACNLPHVGTCSYEGQALP 127 Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 +DA+ +D PCS GT+ ++P VL D + Q+ LL ++PGG V Sbjct: 128 LTPGTWDAIQLDPPCSGWGTVEKNPQVLKLWQGDKLKGLVGLQQLLLAHAARLLRPGGRV 187 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFS C+ + ++E V+ + LV + ++ EG +R+ Sbjct: 188 VFSTCTTNDDENEAQVRFA----EEELGLVREHLTPFEGFVWEQRPGGEGTLRV------ 237 Query: 422 KIDGVSSGMDGFFAVALRR 440 DG S GF+ LR+ Sbjct: 238 --DGERSAAQGFYVALLRK 254 >gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU Goat Q177'] gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA 334] gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii CbuK_Q154] gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU Goat Q177'] gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA 334] gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154] Length = 138 Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K+ NAR + L L+ + LS + + +V T++ + Sbjct: 4 KTRHNARRYALQALYQWFFCETKPDALISQFMEEH---DLSDTEVAYFKEVVTGTIQHVA 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID ++ L + +LR+S+ ++L+ +V V+D A+E K Sbjct: 61 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 120 Query: 121 A 121 Sbjct: 121 K 121 >gi|315056243|ref|XP_003177496.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS 118893] gi|311339342|gb|EFQ98544.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Arthroderma gypseum CBS 118893] Length = 866 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 82/246 (33%), Gaps = 76/246 (30%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310 A D +R L + RL+ + DA Y K FD + Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++ ++ + + + Q ++L + + +K GG VV+S CS++ Sbjct: 300 LADVPCSGDGTTRKNFNLWKDWNPANGIGLFVTQARILFRALQMLKVGGRVVYSTCSMNP 359 Query: 371 QDSEEVVQKV---------------------LRSSPIP------------VELVPLNSAY 397 ++E ++ V L+ P E P Sbjct: 360 IENEAIIAHVIDRCGGSSKVEIVNCEKELPELKRRPGLTTWKIMDKTGRIYENWPEAEEE 419 Query: 398 WKSIDMAMALSPEG---------------WIRITPDMLEKIDGVSSGMDGFFAVALRR-- 440 + ++ A + EG +R+ P M + GFF L + Sbjct: 420 VRKLNPAASRLVEGMFPPSGVADVGDLTRCMRVYPHMQD--------TGGFFITVLEKKR 471 Query: 441 --LIQP 444 ++P Sbjct: 472 EIKVKP 477 >gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana ATCC 700345] gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345] Length = 135 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + ++ D R ++ Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QDVAGVDIAYFRELLGGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++ + L + ++R++ ++ + DV ++ A+E AK Sbjct: 58 KKSQLDELITPFVTRPLDEVDPVEKAIVRIATYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|302503310|ref|XP_003013615.1| hypothetical protein ARB_00062 [Arthroderma benhamiae CBS 112371] gi|291177180|gb|EFE32975.1| hypothetical protein ARB_00062 [Arthroderma benhamiae CBS 112371] Length = 854 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 77/238 (32%), Gaps = 60/238 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----------------LFDAV 310 A D +R L + RL+ + DA Y K FD + Sbjct: 240 IANDSDYKRAHLLIHQMKRLNSPNLLVTNHDATVYPSIKLPAVSADGQPAKNRYLKFDRI 299 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L D PCS GT R++ ++ + + + Q ++L + + +K GG VV+S CS++ Sbjct: 300 LADVPCSGDGTTRKNFNLWNDWNPANGIGLFATQARILFRALQMLKVGGRVVYSTCSMNP 359 Query: 371 QDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALS---PEGWIRITPD------- 418 ++E ++ V+ VE+V + + + RI + Sbjct: 360 IENEAIISHVIDRCGGSSKVEIVDCEDQLPELKRRPGLTTWKIMDKTGRIYENWAEAEEE 419 Query: 419 ----------------------------MLEKIDGVSSGMDGFFAVALRR----LIQP 444 ++ GFF L + ++P Sbjct: 420 VRKLNSAASRLVEGMFPPSGDADVGDLTRCMRVYPHMQDTGGFFITVLEKKREIKVKP 477 >gi|220910233|ref|YP_002485544.1| Fmu (Sun) domain-containing protein [Cyanothece sp. PCC 7425] gi|219866844|gb|ACL47183.1| Fmu (Sun) domain protein [Cyanothece sp. PCC 7425] Length = 323 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 96/279 (34%), Gaps = 14/279 (5%) Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIV----SLP 216 E A +P + + A P + P Sbjct: 18 RPEEQEQFIAALQTPPAFHPCILWTRPRPNPLPFAPEPPLDWQPDFVDRLPLGIRPGQDP 77 Query: 217 GFAEGVWWVQDASASIP-VQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSK 273 +G ++ D S+ L VLDLCAAPGGK+ + + +V Sbjct: 78 LHEQGYYYCLDFSSVFAATPLLSLPPADRVLDLCAAPGGKSIFAWRALQPQLLLSNEVIG 137 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDY--CPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 +R+ L NL R + + + +D + + + VLVDAPCS + + V Sbjct: 138 KRVGMLIANLKRCGVASVAVFSLDPQVWTAQAEAMAQVVLVDAPCSGQSLLAKGEKVPGC 197 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 I ++A Q+++L V PGG ++++ C+ +++E+V + + P Sbjct: 198 FHPVTINQNANRQKRILANAAQVVAPGGYLLYTTCTFAPEENEQVCEWLGSKFPQF---- 253 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 A S R+ P G + M Sbjct: 254 -QPMAVPALAAYQSPFSSSPCYRLWPQSGLGAGGFTMLM 291 >gi|261328229|emb|CBH11206.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 935 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 97/290 (33%), Gaps = 76/290 (26%) Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----------------IVS 262 E + Q S+ +PV L +VLDLCA+PG KT+ + Sbjct: 289 EHLISFQSTSSMLPVLLLDPRPGDAVLDLCASPGNKTSLVLDYVSSLRSTSLPSSNPHFH 348 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLFDAVLVDAPC 316 + A DVS R + R + + ++ +LVDAPC Sbjct: 349 HGCIVANDVSPPR-SRQLAQRLRNSSPTVAVTQFHGQSLPLETGASGGNKYNKILVDAPC 407 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G ++R ++ Q +LL + ++ GG +V+S C+L+ + E V Sbjct: 408 SGEGRMQRDAMSWRMWHPLRGLQFMQTQLRLLRRAVNLCSVGGHIVYSTCTLNPLEDEAV 467 Query: 377 VQKVLRSSPIPVELVP------------------------------LNSAYWKSIDMAMA 406 + VLR + + P L A K Sbjct: 468 IAAVLRDGAVELVEPPRELREKSGWRFSRGLRRWVVPSRAGGFLNTLAEAEAKGEGNPTT 527 Query: 407 LSP----EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ EG +R+ P + G +GFF LR+L Sbjct: 528 LTDLFPYEGNEKIQSALESCCLRVMPHC-------NGGAEGFFVALLRKL 570 >gi|72389242|ref|XP_844916.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62360023|gb|AAX80446.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801450|gb|AAZ11357.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 935 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 61/290 (21%), Positives = 97/290 (33%), Gaps = 76/290 (26%) Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-----------------IVS 262 E + Q S+ +PV L +VLDLCA+PG KT+ + Sbjct: 289 EHLISFQSTSSMLPVLLLDPRPGDAVLDLCASPGNKTSLVLDYVSSLRSTSLPSSNPHFH 348 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------PKKLFDAVLVDAPC 316 + A DVS R + R + + ++ +LVDAPC Sbjct: 349 HGCIVANDVSPPR-SRQLAQRLRNSSPTVAVTQFHGQSLPLETGASGGNKYNKILVDAPC 407 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 S G ++R ++ Q +LL + ++ GG +V+S C+L+ + E V Sbjct: 408 SGEGRMQRDAMSWRMWHPLRGLQFMQTQLRLLRRAVNLCSVGGHIVYSTCTLNPLEDEAV 467 Query: 377 VQKVLRSSPIPVELVP------------------------------LNSAYWKSIDMAMA 406 + VLR + + P L A K Sbjct: 468 IAAVLRDGAVELVEPPRELREKSGWRFSRGLRRWVVPSRAGGFLNTLAEAEAKGEGNPTT 527 Query: 407 LSP----EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L+ EG +R+ P + G +GFF LR+L Sbjct: 528 LTDLFPYEGNEKIQSALESCCLRVMPHC-------NGGAEGFFVALLRKL 570 >gi|89068275|ref|ZP_01155685.1| NOL1/NOP2/sun family protein [Oceanicola granulosus HTCC2516] gi|89046192|gb|EAR52250.1| NOL1/NOP2/sun family protein [Oceanicola granulosus HTCC2516] Length = 377 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 76/441 (17%), Positives = 127/441 (28%), Gaps = 75/441 (17%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +L + + L Y + + D+ +R +V A + Sbjct: 1 MEVLDLWL-SGLPLEAAWQRWYRGARYAG--SSDRAAIRDLVY----------AAVRRRR 47 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + + L + +L + D V A + A Sbjct: 48 SAAALGGGAATGRGLILG---LLRAEGVDPEGVFTGTGHAPPPLTDAERAGP-------- 96 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 A +P+W R+E G R A + L V A Sbjct: 97 ------GALTRAERLDVPDWLLLRIEAALGP-RTEDALAAMQVRADVHLRVNTRRADRAA 149 Query: 192 ----------KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + I + + EG+ +QDA++ V Sbjct: 150 LVARLVDAGLEAAPHGEVDTAITIAGDARKLARTGAVDEGLAELQDAASQAVVARLAERP 209 Query: 242 NLSVLDLCAAPGGK-TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 VLD CA GGK A + A++ A D++ R+ L R I Sbjct: 210 AARVLDYCAGGGGKALAFADLLDAEIVAHDIAPARMADLPARAARAGQQ----IATRGTS 265 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD V DAPCS +G+ RR P+ W + + Q +L Q V PGG Sbjct: 266 ELAGEAFDLVFCDAPCSGSGSWRRDPEGKWRLTPARLDELVAVQAGVLAQAHRLVAPGGR 325 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 + ++ CS+ + + +R+ P + Sbjct: 326 LGYATCSVL--------------------AEENEAQAAAFLAAHAGWRQCDALRLVPGDV 365 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 DGFF R+ Sbjct: 366 ---------GDGFFLAVFERV 377 >gi|195348858|ref|XP_002040964.1| GM22476 [Drosophila sechellia] gi|194122474|gb|EDW44517.1| GM22476 [Drosophila sechellia] Length = 440 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 24/233 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + + V ALD S R+ + Sbjct: 212 QNLPSIVCVRVLDPQPFERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271 Query: 283 LDRLHLYAEDIIEMDAF---------------DYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + P + FD +L+DAPCS G R Sbjct: 272 LGHYKCITAHVFNSTKAVAPDAPPAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + ++PGGI+V+S C++ + + E +V L + Sbjct: 330 SCSIKQAKVLSSYPHIQRQLFEQAVQLLRPGGILVYSTCTVTEDECECLVAWALGKF-VE 388 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L + R+ G ++ GFF ++ Sbjct: 389 LRLTDATPRWGGPGLSLPGFEASKS-RLL--QRFGPSGANADTVGFFIAKFQK 438 >gi|322700995|gb|EFY92747.1| methyltransferase (Ncl1), putative [Metarhizium acridum CQMa 102] Length = 826 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 57/233 (24%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVLVD 313 A D +R L L RL + DA + FD +L D Sbjct: 241 IANDSDYKRGHMLVHQLKRLSSPNLIVTNHDATQFPSLKLPSTDPTAKPTYLKFDRILAD 300 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS GT+R++ ++ + + Q ++L++ + +K GG VV+S CS++ ++ Sbjct: 301 VPCSGDGTLRKNANLWKDWQPGNALGLHATQIRILVRALQLLKVGGRVVYSTCSMNPVEN 360 Query: 374 EEVVQKVLRSS--PIPVELVPLN---SAYWKSIDMAMALSPEGWIRIT------------ 416 E VV + P VE++ + A + + + R+ Sbjct: 361 ESVVASAIERCGGPGNVEILDCSEQLPALVRRPGLRKWKIMDKSCRMWDTWEQVETFARE 420 Query: 417 ------PD---------------------MLEKIDGVSSGMDGFFAVALRRLI 442 P ++ GFF L + Sbjct: 421 ENDGVVPGRVSQTMFPKLEGTECYDLPLERCMRVYPHLQDTGGFFITVLEKKT 473 >gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1] gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1] Length = 155 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 6/131 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR L S + L D R ++ Sbjct: 8 KRRSRARSKLVQALYQYAVTGASAEDIERQFLA----AGLGDIDVAYFRELIYGVTDRAA 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D L +L L + + +LR+ ++ L+V V+D +VE A+R ++ Sbjct: 64 ELDEQLSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQS- 122 Query: 121 AKLVNSILRRV 131 + +N +L R Sbjct: 123 HRYINGVLDRF 133 >gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9] gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9] Length = 156 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 12/140 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS--------QRDQILVRAI 52 MK + AR ++ L + ++ +D+ ++ + + R + Sbjct: 1 MKRRL-AREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGL 59 Query: 53 VNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110 V + ID +L L + R +Q+LR++ +IL+ DV A ++ A+E Sbjct: 60 VFGVIERKTAIDQMLQQYLTGWQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIEL 119 Query: 111 AKRDKENRHFAKLVNSILRR 130 AK K VN +L + Sbjct: 120 AK-HFGTDESGKFVNGVLGK 138 >gi|17228503|ref|NP_485051.1| hypothetical protein alr1008 [Nostoc sp. PCC 7120] gi|17130354|dbj|BAB72965.1| alr1008 [Nostoc sp. PCC 7120] Length = 317 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 19/248 (7%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGK 255 + L E +G ++ D S+ + + V D+CAAPGGK Sbjct: 59 WQPKFVDRLHLGEKPGQHTLHHQGYFYCLDFSSVFAASILLTIPQSVSLVFDMCAAPGGK 118 Query: 256 TAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVL 311 + + +V +RL L NL R + I D+ + + V+ Sbjct: 119 SVFAWQALHPELIICNEVIGKRLGMLISNLKRCQISPSIIFNRDSSIFAENIPLSSNLVI 178 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 VDAPC+ + + I KSA Q++++ V P G + + C+ + Sbjct: 179 VDAPCTGQSLLAKGEKAPGCFHPTAINKSANRQKRIIANSAQIVAPQGYLAYMTCTYSPE 238 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E+V + L P + V +N + L+ R+ P Sbjct: 239 ENEQVCEWFLSRFP-HFQAVEIN----HLQEYQSHLTNIPCYRLFPQDRLGA-------- 285 Query: 432 GFFAVALR 439 G F + Sbjct: 286 GAFTALFK 293 >gi|154335302|ref|XP_001563891.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060920|emb|CAM37937.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1173 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 1/131 (0%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +D VLVDAPCS G + R ++ Q LL + + K GG VV++ C Sbjct: 528 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRVVYATC 587 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-RITPDMLEKIDG 425 +L+ ++E VV VLR+ V L+ + G + + + Sbjct: 588 TLNPLENEAVVAAVLRACGDAVALISPPRPLPRRTQSQSEEDDGGSVPPLHLTAGLRSWD 647 Query: 426 VSSGMDGFFAV 436 V SG GFF Sbjct: 648 VPSGTGGFFCS 658 Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 7/31 (22%) Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 R+ P + + DGFF L + Sbjct: 699 CRRVMPHL-------NGNTDGFFVAVLEKRA 722 >gi|158333255|ref|YP_001514427.1| nol1/nop2/sun family protein [Acaryochloris marina MBIC11017] gi|158303496|gb|ABW25113.1| nol1/nop2/sun family protein [Acaryochloris marina MBIC11017] Length = 312 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 92/266 (34%), Gaps = 11/266 (4%) Query: 159 FYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF 218 + + A+++ I + +++A+ + + E Sbjct: 14 QQQQAFIQALTEPQPYSPCIAWIKGRSEKASFQRVDALPWQLPFVDRLAVGERPGKHDLH 73 Query: 219 AEGVWWVQDASASI--PVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKR 274 +G ++ D S+ VLDLCAAPGGK A + + + +V + Sbjct: 74 HQGAYYCLDFSSVFAATPLTVIRKKPKVVLDLCAAPGGKSLLAWRFLQPHLLVSNEVIGK 133 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTR 332 R+ L NL R + ++ D D VLVDAPC+ + + Sbjct: 134 RVGMLISNLKRCQIAPVRVLSADPSVLAEAIPASADVVLVDAPCTGQSLLAKGESAPGCF 193 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 I + QR++L V PGG + + C+ + ++E+V + R P Sbjct: 194 HPASIQHNVKRQRRILANASRLVVPGGYLAYMTCAFSEAENEQVCRWFTRRFPNF----- 248 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPD 418 + L+ RI P Sbjct: 249 EPQTVDALLAFQSHLTDLPCYRIWPQ 274 >gi|332017885|gb|EGI58545.1| Putative methyltransferase NSUN6 [Acromyrmex echinatior] Length = 461 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 31/243 (12%) Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKL 279 +Q+ + + + ++LD+CAAPG KT + + + ++ L K+ Sbjct: 226 RPHALLQNLPSIVCSLVLNPQPGETILDMCAAPGNKTTHISLLMKGQGTIIALEKNLGKV 285 Query: 280 RCNLDRL-HLYAEDIIEMD-----------------AFDYCPKKLFDAVLVDAPCSSTGT 321 + ++ + I D + FD +L+D PCS+ G Sbjct: 286 KRFKEKCENEKNIKIFCCDATKAIIEREHSFVREHTDGPPFEENYFDRILLDTPCSALG- 344 Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + P + T + QR L + +K G +V+S C++ ++E ++ L Sbjct: 345 --QRPQLYNTITPAQLHSYVPLQRNLFSTAVRLLKLKGTLVYSTCTITIAENEGIIAWAL 402 Query: 382 RSSP----IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + P V+ Y + L+ E ++ G S GFF Sbjct: 403 KQFPKLQLQSVKDRIKTDKYGTPGYIIDGLTNENAKKV------CRFGPESDSIGFFIAC 456 Query: 438 LRR 440 L++ Sbjct: 457 LKK 459 >gi|332225150|ref|XP_003261743.1| PREDICTED: putative methyltransferase NSUN3 [Nomascus leucogenys] Length = 340 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 105/291 (36%), Gaps = 22/291 (7%) Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220 +L ++ + + L + +P Sbjct: 50 WQYAVLLNRFNYPFELEKDLHLKGYHTLFQGSLPNYPKSMKCYLSRTPGRIPSERHQIGN 109 Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLE 277 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLR 169 Query: 278 K------LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLW 330 +++ ++ ++FD VLVDAPCS+ + Sbjct: 170 WLRQTLESFIPQPLINVINVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKA 229 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +R Q +LL I ++PGGI+V+S C+L K ++++V+ ++L S + + Sbjct: 230 SRRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHSNIMPM 289 Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 290 DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|73537001|ref|XP_847919.1| hypothetical protein [Leishmania major strain Friedlin] gi|321438835|emb|CBZ12595.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 638 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 98/271 (36%), Gaps = 52/271 (19%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL-------IVSGAKVTALDVSK 273 G Q+ + +P L + + VLD+CAAPG KT+Q+ V A DV Sbjct: 130 GYLTRQETVSMLPPLLLQVESGMRVLDMCAAPGSKTSQVLELLLAGESGRGVVVANDVKA 189 Query: 274 RRLEKLRCNLDRL-----HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 RL+ L +R HL + + FD VL D CS GT+R+ D+ Sbjct: 190 SRLDVLHHQTNRAAGAHLHLIITNTDATRFPLLPLAERFDRVLCDVMCSGDGTLRKSIDM 249 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D+ Q ++LL+G++ K GGIVV+S CSL+ + E VV L + Sbjct: 250 WPRWDSLQGANLHHTQMRVLLRGMASCKSGGIVVYSTCSLNPVEDEAVVSACLAQTEGTF 309 Query: 389 ELVPLNSAYWKSIDMA--------------------------MALSPEGWIRITPDML-- 420 EL+ + A + + P M Sbjct: 310 ELIDPTPLHHGLCASPGMTSWTVTTRDLTTALRNYEDAKAFMEAQTDRRTFQYAPTMFAN 369 Query: 421 ------------EKIDGVSSGMDGFFAVALR 439 +I + GFF ALR Sbjct: 370 TELLVDQHIERTRRILPHTQDTGGFFVAALR 400 >gi|225156170|ref|ZP_03724650.1| tRNA and rRNA cytosine-C5-methylase-like protein [Opitutaceae bacterium TAV2] gi|224803060|gb|EEG21303.1| tRNA and rRNA cytosine-C5-methylase-like protein [Opitutaceae bacterium TAV2] Length = 434 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 65/421 (15%), Positives = 120/421 (28%), Gaps = 40/421 (9%) Query: 28 LLDLEYGD-SAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSL-QQL 85 + D + + LS ++ + L RI + L Sbjct: 39 VFDDWIRGLFSKKGLSSHERH----LYYAALMMWLRIRNWC-----RPVLELDPDTGLAL 89 Query: 86 LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA-- 143 + +++ V A A + S + +A Sbjct: 90 ICLAL--------PPGQV---RSALASDLALPESEAGRLPSPDALATVAPDFAPFNLAKL 138 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 S + + + + +E L + Sbjct: 139 MPSWFTDQALWTFADDTLERWFTPTPMWLRCRPGWRDIARDMMEKEGQPTQVHPLIPDAL 198 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG 263 L + +L F G+ VQD A + + + L+ A G L Sbjct: 199 GLPPDTL-VSNLRAFMGGLCEVQDIGAQAIIAMSEPQSGEVWLNTFAGLGRHARALADLV 257 Query: 264 AKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 + +D + R +L + +A I++ +D V A S +G +R Sbjct: 258 GETGRVDAADTRQNELYSLIPGNDPHARKNIQIVDTKGGGGGAYDGVFAFALSSCSGLLR 317 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 P +L + Q LL + V+PGG +V++ S+ ++ VV+ + Sbjct: 318 HRPWLLHQMSPSTLNDFVGAQHDLLRESAKQVRPGGRLVYAVTSVCLAETNNVVELFAET 377 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 P + P D L+ GW RI P L+ D + RR + Sbjct: 378 HPQFEVVKPA------LADRLARLAGLGW-RIHPADLDG--------DARYMAVFRRRAK 422 Query: 444 P 444 P Sbjct: 423 P 423 >gi|224009672|ref|XP_002293794.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970466|gb|EED88803.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 470 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 71/280 (25%), Positives = 101/280 (36%), Gaps = 66/280 (23%) Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA------------ 257 +SI S+ G+ G + VQDA + VQ VLD CA GGKT Sbjct: 209 KSIWSMRGWQNGYFEVQDAGSQCIVQSLEVSPGDYVLDYCAGNGGKTFGLASVLMDTNRL 268 Query: 258 ------QLIVSGAKVTALDVSKRRLEKLRCNLDRLH------------------------ 287 + + A DV + RL ++ +L R+ Sbjct: 269 RRDDPDYSDEITSHIVAHDVVEERLRQVEGSLSRVGFEDGDPSDLSTITSYSAGCEASND 328 Query: 288 ----LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS-AC 342 L I FDAVLVDAPCSSTG +RR P W + ++ Sbjct: 329 GSRRLRCSIQIASSTEIESKSSHFDAVLVDAPCSSTGVLRRRPSQRWDIRENQVLDVLPK 388 Query: 343 FQRKLLLQGISFVKPGG-IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI 401 Q ++L + SFVK GG +V+S CS+ K+++E V + A Sbjct: 389 LQLEILQRAASFVKEGGGKLVYSTCSMLKEENESVCRLF---------EESDAYAEHGFQ 439 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + P +S DGFF +RL Sbjct: 440 RWGFDNRETNSVTLLP---------TSNSDGFFIARWKRL 470 >gi|126460774|ref|YP_001057052.1| PUA domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250495|gb|ABO09586.1| PUA domain containing protein [Pyrobaculum calidifontis JCM 11548] Length = 375 Score = 98.0 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 95/234 (40%), Gaps = 31/234 (13%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271 I LP +AEG+ + Q A + L +DL AAPGGK L G +V A+D Sbjct: 167 IRDLPEYAEGLIYSQSLPAIAVGHVAKRLGVEKAVDLNAAPGGKCTHLAQLGMRVFAVDR 226 Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFD---YCPKKLFDAVLVDAPCSSTGTIRRHPD 327 S ++ +LR L RL L A D++ D+ P+ LVD PC+ G P Sbjct: 227 SWSKISRLREELKRLGLEAQVDVLLHDSRYLDRDFPRLRAGLALVDPPCTDIGV---RPK 283 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + A +Q + L +K V++S C+L ++EEVV L+S Sbjct: 284 IYHRVTYKAAKTLAQYQLQFLKTA---LKIADYVIYSTCTLTYVENEEVV---LKSRAQT 337 Query: 388 VEL-VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L +P+ + W E R P + GFF L + Sbjct: 338 LHLDLPIGAPGW---------GCETCRRFLPHI--------HNTPGFFLALLSK 374 >gi|322706721|gb|EFY98301.1| methyltransferase (Ncl1) [Metarhizium anisopliae ARSEF 23] Length = 827 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 75/233 (32%), Gaps = 57/233 (24%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-------------KKLFDAVLVD 313 A D +R L L RL + DA + FD +L D Sbjct: 241 IANDSDYKRGHMLVHQLKRLSSPNLIVTNHDATQFPSLKLPSTDPTAKPTYLKFDRILAD 300 Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS GT+R++ ++ + + Q ++L++ + +K GG VV+S CS++ ++ Sbjct: 301 VPCSGDGTLRKNANLWKDWQPGNALGLHTTQIRILVRALQLLKVGGRVVYSTCSMNPVEN 360 Query: 374 EEVVQKVLRSS--PIPVELVPLN---SAYWKSIDMAMALSPEGWIRIT------------ 416 E V+ + P VE++ + A + M + R+ Sbjct: 361 ESVIASAIERCGGPGNVEILDCSEQLPALVRRPGMRKWKIMDKSCRMWDTWEQVETFARE 420 Query: 417 ------PD---------------------MLEKIDGVSSGMDGFFAVALRRLI 442 P ++ GFF L + Sbjct: 421 ENDGVVPGRVSQTMFPKLEGTECYDLPLERCMRVYPHLQDTGGFFITVLEKKT 473 >gi|297843456|ref|XP_002889609.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335451|gb|EFH65868.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 599 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P FD VL+DAPCS+ G R + +QRK+L Q + V+ GGI+ Sbjct: 454 FPPDSFDRVLLDAPCSALGL--RPRLFAGLETVISLRDHGRYQRKMLDQAVQLVRVGGIL 511 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PD- 418 V+S C+++ ++E VV+ L + L P + + P+G+I P Sbjct: 512 VYSTCTINPSENEAVVRYALDKY-RFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGE 570 Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438 + + GFF Sbjct: 571 EEMVQKFDPSSELDTIGFFIAKF 593 >gi|322490804|emb|CBZ26068.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 762 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 99/295 (33%), Gaps = 74/295 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------------------I 260 Q+ + IP L N LD+CA+PG KTAQ+ Sbjct: 180 ISRQEEVSMIPPFLLDIQPNDVCLDMCASPGSKTAQMLVALGRHKVVPFDSDASPFPFEY 239 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK------------- 305 S V A ++ +R L + RL L DA + Sbjct: 240 DSDGLVIANELDAKRANMLVHQVKRLRLLFPFTLFTNHDARYFPEMSLQPQPVDAEKAAA 299 Query: 306 -----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD +L D CS GT+R+ P + + + Q ++ L+ ++ GG Sbjct: 300 GAEVLRFDKILCDVVCSGDGTLRKAPHIFKLWSPKEAINLQKLQIEIALRACHLLRVGGR 359 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-------------AL 407 +V+S CSL+ ++E VV +++ + + LV + K + Sbjct: 360 LVYSTCSLNPVENEAVVAQIVHRTRGAMRLVDARALLPKLVCAPGMTKWTVTDAKGRVFP 419 Query: 408 SPEGWIR--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443 +PEG + + P ++ GFF L ++ + Sbjct: 420 APEGNMHEALFPPHTPGGYSSAAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 474 >gi|239607185|gb|EEQ84172.1| methyltransferase [Ajellomyces dermatitidis ER-3] Length = 871 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------------KKLFDA 309 A D +R L + RL+ + DA Y FD Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSLKLPSLPPPEGKPVRNRYLKFDR 296 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQCRILTRALQMLKVGGRVVYSTCSMN 356 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT-------- 416 ++E V+ V+ P V ++ ++ +S ++ + R Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELPALKRSPGLSSWTIMDKQGRTWSSWKDVEE 416 Query: 417 -----------------P---------DMLEKIDGVSSGMDGFFAVALRRL----IQPK 445 P ++ FF L ++ +P+ Sbjct: 417 AVSQGDDTLNRIVEGMFPPLKEEGIDLSRCMRVYPHQQDTGAFFITVLEKMSDIKARPE 475 >gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis ATCC 14580] gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis ATCC 14580] gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2] gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580] gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580] gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2] Length = 129 Score = 97.7 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I + +V L Sbjct: 1 MKRRT-AREKALQSLFQIDVSDIEPNEAMQHALDGQESD-------AFFEQLVYGVLENK 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +ID ++ L L R + +LR+S ++++L D+ ++ A+E AK+ + Sbjct: 53 EKIDEMIKRHLVNWKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELAKQF-GDD 111 Query: 119 HFAKLVNSILRR 130 AK VN +L Sbjct: 112 KSAKFVNGVLSN 123 >gi|194222952|ref|XP_001503018.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 3 [Equus caballus] Length = 587 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 112/308 (36%), Gaps = 24/308 (7%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKE 207 +P+ + + + + + P L + + + Sbjct: 285 LPDLRDQDILTSPCCWQYAVLLNRFNYPFN--LEEALRLRGYRTVFQGSLPHCPKSMKCY 342 Query: 208 LPESIVSLPGFAE-----GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS 262 L + +P +++ +A++ +PV + VLDLCAAPGGK+ L+ Sbjct: 343 LSTTAGRMPSERHQVGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQC 402 Query: 263 GAKV--TALDVSKRRLEKLRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDA 314 + RL+ L + + + + + D D + FD VLVDA Sbjct: 403 ADPGYLHCNEYDHLRLKWLMQTLESFIPQPLVNGIKVSQSDGRDVGDAQPETFDKVLVDA 462 Query: 315 PCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 PCS+ + QR LL I ++PGG++V+S C+L + ++ Sbjct: 463 PCSNDRSWLFSPDAQKAACRISQRRSLPLLQRGLLRSAIKALRPGGLLVYSTCTLSRAEN 522 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDG 432 ++V+ VL + + + A S D + A + + + + PD Sbjct: 523 QDVINDVLNTHSNVIPVDITEMARTCSQDFSFAPTGQECGLLVIPDKGRAWGP------- 575 Query: 433 FFAVALRR 440 + L++ Sbjct: 576 MYVAKLKK 583 >gi|186685972|ref|YP_001869168.1| Fmu (Sun) domain-containing protein [Nostoc punctiforme PCC 73102] gi|186468424|gb|ACC84225.1| Fmu (Sun) domain protein [Nostoc punctiforme PCC 73102] Length = 323 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 14/277 (5%) Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--- 208 R E+ I ++ + + L + + Sbjct: 10 KVSRRLFANLDEQEKFIEALMNPQPFLPSILWCKEKLNISPLPVETPIYWQPQFTDRLSL 69 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGA 264 E P +G ++ D S+ + V D+CAAPGGK+ Sbjct: 70 GEKPGQHPLHQQGYFYCLDFSSIFAATTLLAIPQSVRLVFDMCAAPGGKSIFAWKALQPE 129 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTI 322 + + +V +RL L NL R + ++ D+ + + + V+VDAPC+ + Sbjct: 130 LLISNEVIGKRLGMLISNLKRCQISPSAVVNRDSSIFAEMFPYFSNLVIVDAPCTGQSLL 189 Query: 323 RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 + I KSA Q++++ V G + + C+ +++E+V + L Sbjct: 190 AKGEKAPGCFHPTAINKSANRQKRIIANSAKLVSSQGYLAYMTCTYSPEENEQVCEWFLE 249 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 P + N ++S L+ R+ P Sbjct: 250 RFPQFQAMEISNLTKYQS-----HLTTIPCYRMFPQD 281 >gi|327351145|gb|EGE80002.1| methyltransferase [Ajellomyces dermatitidis ATCC 18188] Length = 871 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------------KKLFDA 309 A D +R L + RL+ + DA Y FD Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSLKLPSLPPPEGKPVRNRYLKFDR 296 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQCRILTRALQMLKVGGRVVYSTCSMN 356 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT-------- 416 ++E V+ V+ P V ++ ++ +S ++ + R Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELPALKRSPGLSSWTIMDKQGRTWSSWKDVEE 416 Query: 417 -----------------P---------DMLEKIDGVSSGMDGFFAVALRRL----IQPK 445 P ++ FF L ++ +P+ Sbjct: 417 AVSQGDDTLNRIVEGMFPPLKEEGIDLSRCMRVYPHQQDTGAFFITVLEKMSDIKARPE 475 >gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii Dugway 5J108-111] gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway 5J108-111] Length = 179 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K+ NAR + L L+ + LS D + +V T++ + Sbjct: 45 KTRHNARRYALQALYQWFFCETKPDALISQFMEEH---DLSDTDVAYFKEVVTGTIQHVA 101 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID ++ L + +LR+S+ ++L+ +V V+D A+E K Sbjct: 102 IIDELMTAHLDRKISALNPVELSVLRLSIYELLHRKEVPYKVVIDEALELVKEFGAEAGH 161 Query: 121 A 121 Sbjct: 162 K 162 >gi|330834473|ref|YP_004409201.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566612|gb|AEB94717.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4] Length = 345 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 42/253 (16%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L + I L G+ Q ++ ++ ++D+ A P Sbjct: 129 LKRDDWTVQVTESIYVSPKISELDVIKSGLAISQGKASMYVARIVDPKPGERIVDMNAFP 188 Query: 253 GGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLF 307 GGK + + D S++++EKLR L+ L + + D+ K Sbjct: 189 GGKLTHIYQLEPKVNLVGFDHSQKKIEKLRSKLELLKMP-IRVYVADSRYLDRDLGIKDV 247 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 D V++D PCS+ G P + +D +DI+ + +Q++ + + +K GG +V+S C+ Sbjct: 248 DKVIIDPPCSALGV---RPKLYDKKDKNDILNFSSYQKQFINSAWAILKRGGTLVYSTCT 304 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 Q++EEV+ E +R P++ Sbjct: 305 TTLQENEEVISD-------------------------PRFEIEFSLRFHPNV-------- 331 Query: 428 SGMDGFFAVALRR 440 + GFF L + Sbjct: 332 HDITGFFIAKLIK 344 >gi|42561755|ref|NP_172143.3| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|30102680|gb|AAP21258.1| At1g06560 [Arabidopsis thaliana] gi|110743735|dbj|BAE99704.1| hypothetical protein [Arabidopsis thaliana] gi|332189884|gb|AEE28005.1| NOL1/NOP2/sun-like protein [Arabidopsis thaliana] Length = 599 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P FD VL+DAPCS+ G R + +QRK+L Q + V+ GGI+ Sbjct: 454 FPPNSFDRVLLDAPCSALGL--RPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGIL 511 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PD- 418 V+S C+++ ++E VV+ L + L P + + P+G+I P Sbjct: 512 VYSTCTINPSENEAVVRYALDKY-RFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGE 570 Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438 + + GFF Sbjct: 571 EELVQKFDPSSELDTIGFFIAKF 593 >gi|6692692|gb|AAF24826.1|AC007592_19 F12K11.10 [Arabidopsis thaliana] Length = 365 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 9/143 (6%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P FD VL+DAPCS+ G R + +QRK+L Q + V+ GGI+ Sbjct: 220 FPPNSFDRVLLDAPCSALGL--RPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGIL 277 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT--PD- 418 V+S C+++ ++E VV+ L + L P + + P+G+I P Sbjct: 278 VYSTCTINPSENEAVVRYALDKY-RFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGE 336 Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438 + + GFF Sbjct: 337 EELVQKFDPSSELDTIGFFIAKF 359 >gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073] gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073] Length = 145 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L + S L+ + L R R +V T+ I Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLEEG---ELPPRAMTFTRELVEGTMAKRDAI 59 Query: 64 DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 DA++ + L R + +LR+++ ++ Y V++ A+E AK N Sbjct: 60 DAIIRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFN-NEEAG 118 Query: 122 KLVNSILRR 130 + VN +L Sbjct: 119 RFVNGLLDN 127 >gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893] gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893] Length = 158 Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + S+T + D+ +S+ D R ++ R +D + Sbjct: 25 ARALAMQGLYQRHFSKSSITDIESEFIVDN---DMSKVDAAYFRDLLRGVHREQAELDRL 81 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 L+ L + ++R+ ++ + LDV V++ +E AKR Sbjct: 82 LEPFLDRPIHEVDAIELAIVRLGAYELKHRLDVPYKVVINEGIEMAKRFGGTEGHK 137 >gi|308502930|ref|XP_003113649.1| hypothetical protein CRE_26337 [Caenorhabditis remanei] gi|308263608|gb|EFP07561.1| hypothetical protein CRE_26337 [Caenorhabditis remanei] Length = 732 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 69/414 (16%), Positives = 134/414 (32%), Gaps = 57/414 (13%) Query: 48 LVRAIVNVTL------RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADY 101 L+ ++ TL R + +V+ + + L+ D Sbjct: 352 LLYVLMYETLVGSGLNRCSQELKSVISRRSQK-IKDVEKELEA------------DGRGI 398 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 + A E AK+ N +++ +W E Sbjct: 399 KSIKEAEEGAKKVLLPG------NKSNHIEYSFLFQIIIPRYARINTLKWTAEEAMKTLE 452 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF--- 218 E A + + K + + + L +I + + Sbjct: 453 TEEWKLQGSASVENFAEVVGNM--------KEDEIYVDPHVESLLIFAPNIQNFHEYWMV 504 Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRR 275 + +QD ++ +P L VLD CAAPG KT+ ++ + KV A+D + R Sbjct: 505 EQRYLILQDKASCLPAFLLNPRPGSQVLDTCAAPGMKTSHAAAIMDNQGKVWAMDRAADR 564 Query: 276 LEKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW- 330 + ++ LD + D ++D PCS +G ++R ++ Sbjct: 565 VAVMKQLLDGSKVAIASAFCGDFLKTDITDKKFSKVKFAIIDPPCSGSGIVKRMDEITGG 624 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIP 387 + + + K Q +L + PG V+S CS+ ++++E+V+ +VL + Sbjct: 625 NAEKERLEKLKNLQAMILKHALKL--PGLKRAVYSTCSIHEEENEQVIDEVLLDTYVRQN 682 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 L W + E +R P + +GFF R+ Sbjct: 683 FVLKKDVLPEWTHRGLKTYEVGEHCLRADPKVTL--------TNGFFVAVFERV 728 >gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12] gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12] Length = 134 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + + D R + T Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVAYFRELFTGTAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID ++ + + +LR++ ++ + DV ++ A+E AK Sbjct: 58 KHAQIDELIIPHVERPFNEVSPIEKAILRMATYELTFRKDVPYKVAINEAIELAKTF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|261200933|ref|XP_002626867.1| methyltransferase [Ajellomyces dermatitidis SLH14081] gi|239593939|gb|EEQ76520.1| methyltransferase [Ajellomyces dermatitidis SLH14081] Length = 871 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 60/239 (25%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP-----------------KKLFDA 309 A D +R L + RL+ + DA Y FD Sbjct: 237 IANDNDYKRAHLLIHQMKRLNSPNLIVTNHDATMYPSLKLPSLPPPEGKPVRNRYLKFDR 296 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +L D PCS GT R++ +V + + + Q ++L + + +K GG VV+S CS++ Sbjct: 297 ILADVPCSGDGTTRKNVNVWKDWNPANALGLHLTQCRILTRALQMLKVGGRVVYSTCSMN 356 Query: 370 KQDSEEVVQKVLRSS--PIPVELVPLNSAYW---KSIDMAMALSPEGWIRIT-------- 416 ++E V+ V+ P V ++ ++ +S ++ + R Sbjct: 357 PVENEAVIASVIDRCGGPSKVHIMDCSNELPALKRSPGLSSWTIMDKQGRTWSSWKDVEE 416 Query: 417 -----------------P---------DMLEKIDGVSSGMDGFFAVALRRL----IQPK 445 P ++ FF L ++ +P+ Sbjct: 417 AVSQGDDTLNRIVEGMFPPLKEEGIDLSRCMRVYPHQQDTGAFFITVLEKMSDIKARPE 475 >gi|114629650|ref|XP_001153934.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 isoform 2 [Pan troglodytes] Length = 516 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 23/156 (14%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD +L+DAPCS G + P++ T ++ QRKL + +KP G++V+ Sbjct: 361 PESFDRILLDAPCSGMG---QRPNMASTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVY 417 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C++ ++EE V L P ++L P LS E ++ + Sbjct: 418 STCTITLAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAV 476 Query: 424 DGVSSGMD-------------------GFFAVALRR 440 + MD GFF + Sbjct: 477 PLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 512 >gi|114629652|ref|XP_001153814.1| PREDICTED: NOL1/NOP2/Sun domain family, member 6 isoform 1 [Pan troglodytes] Length = 464 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 23/156 (14%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD +L+DAPCS G + P++ T ++ QRKL + +KP G++V+ Sbjct: 309 PESFDRILLDAPCSGMG---QRPNMASTWSLKEVASYQPLQRKLFTAAVQLLKPEGVLVY 365 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S C++ ++EE V L P ++L P LS E ++ + Sbjct: 366 STCTITLAENEEQVAWALTKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAV 424 Query: 424 DGVSSGMD-------------------GFFAVALRR 440 + MD GFF + Sbjct: 425 PLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVK 460 >gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM 12680] gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM 12680] Length = 138 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L V S L ++ L+ R R +V+ TL + Sbjct: 1 MSRSL-ARETAFKVLFQVDLAGASPRDALQHLTAETP---LADRYLAFARELVDKTLEHV 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID+ + S+ R + ++R++V ++LY ++ V++ AVE AK+ + + Sbjct: 57 KTIDSYISKYSPEWSISRMATVDRNIMRMAVCEMLYTEIDPVVVINEAVELAKKY-GDEN 115 Query: 120 FAKLVNSILRRVS 132 + +N+IL R+ Sbjct: 116 SSSFINAILDRIM 128 >gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica PV-4] gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4] Length = 134 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + + D R +++ T Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNVADVEHEFLTE---QKIDGVDVSYFRELLSGTTT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++ L + +LR++ ++ + DV ++ A+E AK Sbjct: 58 KSAQLDELIMPHLERPFDEVSPIEKAVLRIATYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|218883897|ref|YP_002428279.1| putative RNA methylase, NOL1/NOP2/sun family [Desulfurococcus kamchatkensis 1221n] gi|218765513|gb|ACL10912.1| putative RNA methylase, NOL1/NOP2/sun family [Desulfurococcus kamchatkensis 1221n] Length = 340 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 120/325 (36%), Gaps = 34/325 (10%) Query: 143 AGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----------KFDIETWAHK 192 A + +R G + L + +A P+ + V +E+ + Sbjct: 22 ALRYGYLPYMVQRYLEMLGPDEALELLEAFEKPVKPVVRVNTLLIRPGELMERLESLGFQ 81 Query: 193 LNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLFGTLNNL-SVLDLC 249 L + + + P S I S + +G +++ ++S+ L N VLD C Sbjct: 82 LEEIPWAPASFWVVKTPRSPTIGSTHEYLKGYYYIHRDASSLIPVLLLLHNYEGDVLDAC 141 Query: 250 AAPGGKTAQLIVS-----GAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYC 302 AAPGGK + V A D RL+ L +L R+ L + Sbjct: 142 AAPGGKATFMAQILKERGKGIVYANDYVLYRLKTLVGHLLRMKLDNVVVAWSNALNLPGK 201 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + F +L+DAPCS G I P D+ A + LL + I + G++ Sbjct: 202 LGRRFKRILLDAPCSGEGRISVDPGRKTRTSILDLAMLAKREILLLDRLIDLLDENGVLA 261 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPI------PVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 +S CS+ +++E V+ ++L S ++L + M E IR+ Sbjct: 262 YSTCSIAPEENEYVLSRILNSRSDIEIIEPELKLFNYSPWLTHYRSMEFPRDLEKCIRVW 321 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P G+ GF +RR+ Sbjct: 322 PH--------RHGLFGFTTCLIRRI 338 >gi|195452298|ref|XP_002073293.1| GK13235 [Drosophila willistoni] gi|194169378|gb|EDW84279.1| GK13235 [Drosophila willistoni] Length = 440 Score = 97.3 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 16/233 (6%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVS 272 + +Q + +L +VLD+CAAPG KT L + ++ A++ S Sbjct: 209 DFVRSKKFILQSKGTCLAAELLDPPPGSTVLDMCAAPGMKTVHLCNVMENKGRIYAVEQS 268 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVLW 330 R + L D I DA D +LVD CS G R V Sbjct: 269 GDRYKTLCNITDAAGCKIVTPILGDALTMDSNSCPDVEYILVDPSCSGNGMQNRISVVDE 328 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 +D D + K A Q K+L + + + CSL ++++E+VVQ L+ +P L Sbjct: 329 QKDDDRLFKLAGLQAKILSHAMRAFPNVKRIAYCTCSLWQEENEKVVQFCLQVNPSFKLL 388 Query: 391 ---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + + D +A + + PD S DG F + Sbjct: 389 SGKKALRNKWQSVGDSEIANIGKKCLYCRPD--------SDLTDGIFLALFEK 433 >gi|281413928|ref|ZP_06245670.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus luteus NCTC 2665] Length = 229 Score = 97.3 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 28/216 (12%) Query: 244 SVLDLCAAPGGKTAQLIV----SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAF 299 LDLCA PGGK A L GA + A +V+ R + +R L + A + D Sbjct: 18 RWLDLCAGPGGKAALLAALAAERGATLVANEVAPHRADLVRQALAAVPAGAWTVRAGDGR 77 Query: 300 DYCPKK----LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 FD VLVDAPC+ G +RR P+ W R D+ + Q +LL ++ + Sbjct: 78 TIADAPEAAPAFDRVLVDAPCTGLGALRRRPESRWRRTPADLAELTGLQAELLDAAVAVL 137 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSP-----------IPVELVPLNSAYWKSIDMA 404 PGG++ + CS ++ VQ ++R P V L L + Sbjct: 138 APGGVLAYVTCSPHVAETVVQVQDLVRRHPELELLDARTALDAVALDDLRLDEAEPAGAP 197 Query: 405 MALS-PEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 ++ P G D F LR Sbjct: 198 EPADVVARTAQLWPH--------RHGTDAMFLALLR 225 >gi|109088363|ref|XP_001094721.1| PREDICTED: hypothetical protein LOC706352 [Macaca mulatta] Length = 323 Score = 97.3 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 96/316 (30%), Gaps = 31/316 (9%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT----GGIRL 205 EW + + + +I E W + N Sbjct: 10 EWIVMEWSMAWNGDWNGVENGKENGKQWIMEWSMEWNEEWNGEWNEEWNGEWNGRESGME 69 Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK 265 + E V G GV W + + + + + G K V + Sbjct: 70 WKGREGRVDWNGIENGVEWRIEYNGMERRMEYNGMEQRMEWN-GECNGMKNGMKNVLEWR 128 Query: 266 VTALDVSKRRLEKLRCNLDRL--HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIR 323 + D L + +I + + P+ FD +L+DAPCS G Sbjct: 129 MKQGDSGTPESACFTMIEQAFFRGLSSVEITKRREPPFLPES-FDRILLDAPCSGMG--- 184 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + P++ T ++ QRKL + +KP G++V+S C++ ++EE V L Sbjct: 185 QRPNMACTWSLKELASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTK 244 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD------------ 431 P ++L P LS E ++ + + MD Sbjct: 245 FPC-LQLQPQEPHIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDMLR 303 Query: 432 -------GFFAVALRR 440 GFF + Sbjct: 304 LANKDSIGFFIAKFIK 319 >gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522] gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522] Length = 132 Score = 97.3 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 9/132 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR+ + L + +S +D + + +V T+ L Sbjct: 1 MNRRV-ARVRAVQSLYQIEMTGVSPDQAIDTVLENGEISD------SFLSQLVEGTVEHL 53 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID +L L + L R + +LR++ ++ L D+ ++ A++ AK Sbjct: 54 HEIDELLISALKNWALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIAKGFTGEE 113 Query: 119 HFAKLVNSILRR 130 K VN IL Sbjct: 114 ESGKFVNGILSN 125 >gi|71998419|ref|NP_497089.2| hypothetical protein Y53F4B.4 [Caenorhabditis elegans] gi|34556111|emb|CAB70101.2| C. elegans protein Y53F4B.4b, confirmed by transcript evidence [Caenorhabditis elegans] Length = 439 Score = 97.3 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 76/456 (16%), Positives = 154/456 (33%), Gaps = 55/456 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + ++ CV+ K S+ ++ + + + L+R + +L+F P D +L Sbjct: 10 VAEIIRCVLAKEKSV--------RNAVYGSSYKNKKALLR-LSCESLKFRPVFDEILQ-- 58 Query: 71 LISSLPRKKYSLQQ-----LLRVSVAQ------ILYLDVADYAVVDLAVEQAKRDKENRH 119 L K LL V + + + +V+ +++ K + Sbjct: 59 -DKELKSMKRDANIGGSVELLYVLMYETLVGSGLTRCSQELKSVISRRIQRIKEVEHAMQ 117 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 ++ ++ +W + E+ + Sbjct: 118 DEGRGIKAMKEADDGMKKIQIPRYARINTLKWTADEAMKTLETEKWKILGTLKPENFAEM 177 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGF---AEGVWWVQDASASIPVQL 236 +T D + V + L +I + + + +QD ++ +P L Sbjct: 178 VTKMKD--------DEVYVDPHVENLIIFAPNIQNFYEYWMVEQRYLILQDKASCLPAFL 229 Query: 237 FGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 V D CAAPG KT+ ++ + KV A+D + R+ ++ LD + Sbjct: 230 LNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKVWAMDRAADRVATMKQLLDASKVAIASS 289 Query: 294 IEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLL 348 D +VD PCS +G ++R ++ + + + K Q +L Sbjct: 290 FCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMIL 349 Query: 349 LQGISFVKPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAM 405 + PG V+S CS+ ++++E+VV +VL + L W + Sbjct: 350 KHALKL--PGLKRAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRGLKT 407 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 E +R P + +GFF R+ Sbjct: 408 YEVGEHCLRANPKVTL--------TNGFFVAVFERV 435 >gi|328768988|gb|EGF79033.1| hypothetical protein BATDEDRAFT_17142 [Batrachochytrium dendrobatidis JAM81] Length = 414 Score = 96.9 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 136/392 (34%), Gaps = 36/392 (9%) Query: 42 SQRDQILVRAIVNVTLRFLPRIDAVL--DFVLISSLPRKKYSLQQLLRVSVAQILYLDVA 99 +D+ LV IV TL++ I+ ++ + S + L +L V +L+ Sbjct: 29 DPKDKKLVYGIVCETLKYREVIEEIICSSDIRKSEPKKLAKPLLTVL---VYDLLFGK-- 83 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 + R K + + + R+ + + + I ++P + + N Sbjct: 84 GIKNAGKYKDMLMRHKSRLNAELVKIKVKRKCKNNQDLIPEHIRNAIVLPRYVR---INT 140 Query: 160 YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFA 219 IS +D K + + + L + Sbjct: 141 IKTNMEQVISHFEKKGYRLDTIEKLNEPEYPAMCMIKDQHLPELLLLPPSTDLHEDKLLL 200 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRL 276 +G +QD ++ P + +D CAAPG KT+ L + + A D + RL Sbjct: 201 QGHIVLQDKASCFPAYILSPPKGSVCIDACAAPGNKTSHLSAILGNTGTIYAFDKDRARL 260 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----------DAVLVDAPCSSTGTIRR-H 325 + L+ + D P + VL+D CS +G + R Sbjct: 261 DTLQRLTHQAGCKNILPQFGSFLDADPFDPMFSKARNAMFVEYVLLDPSCSGSGIVGRLD 320 Query: 326 PDVLWTRDTDDIVKS----------ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 + ++D + A FQ+K++L F K +V+S CS ++ ++E+ Sbjct: 321 HLLKNSKDAKADTQQEEIDDRANALADFQKKVILHAFKFPKVK-RIVYSTCSRNRIENED 379 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL 407 VVQ L+ + LV W + ++ Sbjct: 380 VVQYCLQEN-TNFSLVENVFPQWHRRGLEGSI 410 >gi|49903226|gb|AAH76487.1| Zgc:109983 [Danio rerio] Length = 379 Score = 96.9 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV +VLDLCAAPGGK+ ++ + +V + R + Sbjct: 154 KQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKSLAILQTATPGLLHCNEVDQHRHDW 213 Query: 279 LRCNLDRL------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRRHPDV 328 L L+ HL + + + + +D VLVDAPCS+ T H Sbjct: 214 LLKTLESYVPPSLRHLLSVTLQDGRSIGTMQPGAYDKVLVDAPCSNDRSWLYTPDTHRGE 273 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 +W + + + Q++LL ++ V+PGGIVV+S C++ + +++ VV++VL S P V Sbjct: 274 MWLK---ERTQLPLLQKELLCSALAAVRPGGIVVYSTCTMSRAENQSVVEEVLASYPG-V 329 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG-FFAVALRRL 441 EL L + S+ + + P + + + G + L+++ Sbjct: 330 ELQELEQQFIDSLSDHFCFA-----HLHPSVGQLVIPQKGKTWGPMYVSQLKKI 378 >gi|330842051|ref|XP_003292999.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum] gi|325076705|gb|EGC30470.1| hypothetical protein DICPUDRAFT_41394 [Dictyostelium purpureum] Length = 491 Score = 96.9 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 37/254 (14%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------------IVS 262 L G E ++Q + + V +LD+CAAPGGKT + + Sbjct: 246 LNGVLEQNMFLQHLPSLMTVYQLEPKLGDRILDMCAAPGGKTTLIASLIQQQFDQQPSNN 305 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMD-------------AFDYCPKKLFD 308 ++ ALD +K +++K+ +L L + D + FD Sbjct: 306 STEIIALDKNKGKVKKVLDLCKKLSLDSFVKCYSRDSSKLLKEHQQDPSDKVIFKEGSFD 365 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +L+D PCS G+ R + D+ + FQ+KLL + +K GG +V+S C++ Sbjct: 366 KILLDGPCSGLGSKPRFIETSKLI---DLQNCSDFQKKLLDVAVGLLKEGGTLVYSTCTI 422 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGV 426 + +++E V VL P + ++ + + R P Sbjct: 423 NPEENELNVAYVLNKYPNMKLVEQTPHISQIGLENCGLDDQQRKLVQRYDPSD------A 476 Query: 427 SSGMDGFFAVALRR 440 + G GFF + Sbjct: 477 NIGTIGFFISKFIK 490 >gi|75909870|ref|YP_324166.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Anabaena variabilis ATCC 29413] gi|75703595|gb|ABA23271.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Anabaena variabilis ATCC 29413] Length = 322 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 11/228 (4%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGK 255 + L E +G ++ D S+ + + V D+CAAPGGK Sbjct: 59 WQPKFVDRLHLGEKPGQHTLHHQGYFYCLDFSSVFAASILLTIPQSVSLVFDMCAAPGGK 118 Query: 256 TAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVL 311 + + +V +RL L NL R + I D+ + + V+ Sbjct: 119 SVFAWQALHPDLIICNEVIGKRLGMLISNLKRCQISPSIIFNRDSSIFAENIPLSSNLVI 178 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 VDAPC+ + + I KSA Q++++ V P G + + C+ + Sbjct: 179 VDAPCTGQSLLAKGEKAPGCFHPTAINKSANRQKRIIANSAQIVAPQGYLAYMTCTYSPE 238 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++E+V + L P + L+ R+ P Sbjct: 239 ENEQVCEWFLSRFPQF-----QPVRINHLQECQSHLTNIPCYRLFPQD 281 >gi|22298793|ref|NP_682040.1| hypothetical protein tlr1250 [Thermosynechococcus elongatus BP-1] gi|22294974|dbj|BAC08802.1| tlr1250 [Thermosynechococcus elongatus BP-1] Length = 351 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 11/216 (5%) Query: 213 VSLPGFAEGVWWVQDASASI--PVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTA 268 P A G ++ D+S+ L V+D+CAAPGGK+ + Sbjct: 100 GQHPLHAAGAYYCLDSSSVFAAVPLLTLPQEPSLVIDVCAAPGGKSLFAWRSLHPRYLIC 159 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHP 326 + +R+ KL NL R ++ + D+ + D V+VDAPCS + + Sbjct: 160 NETIGKRVGKLIGNLKRCRVHPVGVTSWDSEVLAAEFQGTADVVIVDAPCSGQSLLAKGQ 219 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 I + Q+++L + V+PGG +++S C+ + ++E+V ++ P Sbjct: 220 KAEGCFHPLTIRHNQRRQKRILAAATTLVRPGGWLLYSTCTFSQDENEDVAAWLMAKFPH 279 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 L L+ R+ P E Sbjct: 280 L-----LPQPVPALAAYQSHLAAFPCYRLWPHQGEG 310 >gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica KT99] gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica KT99] Length = 134 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + + D R + T Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVAYFRELFTGTTT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID ++ + + +LR++ ++ + DV ++ A+E AK Sbjct: 58 KSAQIDELIIPHVERPFAEVSPIEKAILRMATYELTFRKDVPYKVAINEAIELAKTF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1] gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius C56-YS93] gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1] Length = 132 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + RI L G +R +V Sbjct: 1 MK-RHEAREKALQALFQIDVGRIPPEEALQNVMGGEEAD-------SFLRQLVFGVTEHQ 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID +L L +L R + +LR++ ++ YL DV +D AVE AK+ + + Sbjct: 53 EEIDELLRANLEKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELAKKFGDTK 112 Query: 119 H 119 Sbjct: 113 S 113 >gi|52545774|emb|CAH56289.1| hypothetical protein [Homo sapiens] Length = 245 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 93/252 (36%), Gaps = 24/252 (9%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L KT+ L Sbjct: 6 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317 + K+ A D+ RRL + L + ++ E D P VL+D CS Sbjct: 66 NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125 Query: 318 STGTIRRHP---DVLWTRDTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQD 372 +G + T + A FQ++ L ++F ++ +V+S CSL +++ Sbjct: 126 GSGGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEE 182 Query: 373 SEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 +E++VQ L+ +P L P A ++ E +R +P G Sbjct: 183 NEDMVQDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------G 233 Query: 433 FFAVALRRLIQP 444 FF + R+ P Sbjct: 234 FFVAVIERVEMP 245 >gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8] gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8] Length = 158 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + ++ + D+ +S+ D + R ++ R +D + Sbjct: 25 ARALAMQGLYQRHFSKTPISDIEAEFMVDN---DMSKVDIMYFRDLLRGVHREQAELDKL 81 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 L+ L L ++R+ ++ + +DV V++ +E AKR Sbjct: 82 LEPFLDRPLKEVDPVELAIVRLGAYELKHRIDVPYKVVINEGIEMAKRFGGTEGHK 137 >gi|256053221|ref|XP_002570098.1| methyltransferase ncl1 [Schistosoma mansoni] gi|227287472|emb|CAY17780.1| putative methyltransferase ncl1 [Schistosoma mansoni] Length = 738 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 105/312 (33%), Gaps = 92/312 (29%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------------L 259 Q+A + +P L ++ ++LDLCAAPG K+AQ Sbjct: 139 ISRQEAVSMLPPLLLDVRSHHTILDLCAAPGSKSAQLVELLHSDAEAVQLKIGVENAPKY 198 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------------- 303 + V A D ++R + + RL I + DA + Sbjct: 199 VEPTGMVIANDFDQKRCYMMVHQVKRLQSPCVVITQEDATCFPRLYLTLSPDEKTGQKDL 258 Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGG-- 359 + +FD VL D PCS GT+R++PD+ + Q ++L +G+ ++ P G Sbjct: 259 RQLMFDRVLADVPCSGDGTLRKNPDLWLRWSPSLGIGEHPLQCRILKRGLELLRDPVGDS 318 Query: 360 ----IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID------------- 402 +V+S CS + ++E VV VL + V L+ + D Sbjct: 319 TNYSRLVYSTCSFNPVENEAVVASVLHACRGTVRLIEPDILEGILPDSSENKDSSRRKFK 378 Query: 403 -----MAMALSPEGWI--------------RITPDML-------------EKIDGVSSGM 430 + + + I P M +++ Sbjct: 379 FRPGLNSWRIMDRKGVWFTSYDEVPTGQRSFIYPSMFPPSNVSDLHLERCKRVLPHDQNT 438 Query: 431 DGFFAVALRRLI 442 GFF L ++ Sbjct: 439 GGFFIAVLEKIA 450 >gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC 51908] gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908] Length = 134 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + + D R +++ T Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVTYFRELLSGTAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID ++ + + +LR++ ++ + DV ++ A+E AK Sbjct: 58 KQAQIDELITPHIERPYDEVSPIEKAVLRLATYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|307106730|gb|EFN54975.1| hypothetical protein CHLNCDRAFT_24352 [Chlorella variabilis] Length = 491 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 86/240 (35%), Gaps = 32/240 (13%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLR 280 ++ ++ +P +++D CAAPG KT L + + + A + +RLE+LR Sbjct: 234 EHRNKASCMPAHALAPQPGWALVDACAAPGNKTTHLAALMANRGSIVAFEKDPKRLERLR 293 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLFDA----VLVDAPCSSTGTIRRHPDVL------- 329 + D P+ VL+D CS +GT D L Sbjct: 294 AIVAATGGTIISPQLADFLAVDPEAPQYRHVQAVLLDPSCSGSGTAFSRMDYLLPSSADR 353 Query: 330 -------WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 W D + A FQ +L + F +V+S CS+ +++E VV VL Sbjct: 354 LKGGRAGWLPDKR-VEALAQFQAACILHALRFPALH-RLVYSTCSVHARENEGVVAAVLE 411 Query: 383 S-SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L + + + E +R+ D G DGFF + Sbjct: 412 EAAQRGFRLEAPFPGWPRRGVEGLVAGAERLVRV--------DADEDGTDGFFVAVFAKK 463 >gi|194876441|ref|XP_001973776.1| GG16283 [Drosophila erecta] gi|190655559|gb|EDV52802.1| GG16283 [Drosophila erecta] Length = 439 Score = 96.9 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 24/234 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + + V ALD S R+ + Sbjct: 211 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDWGSVVALDNSASRVRSMLPK 270 Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + + P FD +L+DAPCS G R Sbjct: 271 LGNYKSIKTHVFDSTKAVAPDAPSAPIGEFTGPPFPCASFDRILLDAPCS--GLGNRPQL 328 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + ++PGGI+V+S C++ + + E +V L Sbjct: 329 SCSIKQAKILSSYPNIQRRLFEQAVQLLRPGGILVYSTCTVTEDECECLVAWALEKF-SE 387 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L W + + + R+ +G S+ GFF ++ Sbjct: 388 LHLTDATPR-WGGSGLPLPGFEKCKSRLL--QRFGPNGASADTVGFFIAKFQKK 438 >gi|149278803|ref|ZP_01884938.1| Fmu (Sun) domain protein [Pedobacter sp. BAL39] gi|149230422|gb|EDM35806.1| Fmu (Sun) domain protein [Pedobacter sp. BAL39] Length = 388 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 35/228 (15%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL 276 + VQD S+ F D CAA GGK + ++ DV + L Sbjct: 188 DHRYYQVQDLSSQKTGNYFKPEKWDYWWDCCAASGGKSLLLHDLEPSVQLLVSDVRENSL 247 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L + L +D FD +L+DAPC+ +GT R P++L+ Sbjct: 248 NNLEERFQQAGLKKYQKKVLDLLQNNEQDLHHYEFDGILLDAPCTGSGTWGRTPEMLYYF 307 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D I A Q+ + + ++KPG +++ CS+ KQ++EEV+ + + + +E + Sbjct: 308 DQRKISGFARLQKSIAGNVVKYLKPGKPLIYITCSVFKQENEEVIAFLEENHGLKLEKME 367 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + Y D F L + Sbjct: 368 VITGYNDKADT-----------------------------MFVARLIK 386 >gi|171185373|ref|YP_001794292.1| Fmu (Sun) domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934585|gb|ACB39846.1| Fmu (Sun) domain protein [Thermoproteus neutrophilus V24Sta] Length = 416 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 79/439 (17%), Positives = 143/439 (32%), Gaps = 47/439 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + +L V + ++L + +R + + +L Sbjct: 13 AKVLHEVTKNGLTLDYAFQKVKRGWRRLDSFKV----FYDASFDAVRHYFLLRHLASALL 68 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 S+ + + R ++LY VE+ +R R A+ ++ Sbjct: 69 GSTSAKAVARTWFVYR--ADKLLYNR--------DLVERYRRRVLKRARARPEEALASLE 118 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWA 190 + S P K L N +E + + +++ + +K D++ Sbjct: 119 ALRGDLPRYLSVKYSYHPAIVKTLLANLPPEEVERILDAGNNTWIWLRVNTLKTDVDKAL 178 Query: 191 HKLNAVMLPTGGIRLKEL------PESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLS 244 L R+ + L QD ++ V Sbjct: 179 KMLEREAEVEPHPRIPFALLLKKAKRPVQYLTAVRTFAAVPQDLASIYAVLSLDPAPGEK 238 Query: 245 VLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDY 301 +LDL AAPG K QL AKV A D S +R+ +++ L L + Sbjct: 239 ILDLAAAPGMKTSLIVQLAEGRAKVVAADFSAKRVARMKHLLKALGAGDAVEVVRADSRR 298 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD L+DAPC+S+G + P V ++ + QR+LL +S + V Sbjct: 299 LKTRRFDKALLDAPCTSSGAFTKEPAVKIYPRVEEAPRYGTLQRELLANALSLAE---QV 355 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 V++ CS+ Q+ EEVV A D+A A R P + Sbjct: 356 VYAVCSIMPQEGEEVVASA------------PAKAEKPHPDLAPAYRGGPGGRTFPHI-- 401 Query: 422 KIDGVSSGMDGFFAVALRR 440 + F+ +++ Sbjct: 402 ------HKSEAFYIALVQK 414 >gi|195592453|ref|XP_002085949.1| GD15057 [Drosophila simulans] gi|194197958|gb|EDX11534.1| GD15057 [Drosophila simulans] Length = 440 Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 24/233 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + + V ALD S R+ + Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271 Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + P + FD +L+DAPCS G R Sbjct: 272 LGHYKCITAHVFNSTKAVAPDAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + ++PGG +V+S C++ + + E +V L + Sbjct: 330 SCSIKQAKVLSSYPPIQRRLFEQAVQLLRPGGTLVYSTCTVTEDECECLVAWALGKF-VQ 388 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L + R+ G ++ GFF ++ Sbjct: 389 LRLTDATPRWGGPGLSLPGFEASKS-RLL--QRFGPSGANADTVGFFIAKFQK 438 >gi|307718878|ref|YP_003874410.1| NOL1/NOP2/sun family protein [Spirochaeta thermophila DSM 6192] gi|306532603|gb|ADN02137.1| NOL1/NOP2/sun family protein [Spirochaeta thermophila DSM 6192] Length = 277 Score = 96.5 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 85/226 (37%), Gaps = 16/226 (7%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA---KVTALDVSKRRLEKLR 280 + D ++ P L VLDLCAAPGGKT L ++ + A + S R +L+ Sbjct: 50 YHLDPASLYPPALLAPEPGHRVLDLCAAPGGKTLLLALALKGRGLLVANEYSSSRRARLK 109 Query: 281 CNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 L + + + +D +L D PCSS + P L Sbjct: 110 QVLTLHLPTHLLAPIRVAGRDGRTWGIHEPEAYDRILADVPCSSEAHLLSSPSHLSRWTP 169 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 I Q LL + PGG++V++ C+L Q+++ VV+K++ +E+V Sbjct: 170 ARIRNLTHTQFALLSSAFLALAPGGLLVYATCALTPQENDGVVEKLVTRRGNALEIVQDP 229 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S+ I PD + + +R+ Sbjct: 230 PPLPASLPPLTLEPTRYGFHILPDTSRGAGPL-------YMALIRK 268 >gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas maltophilia K279a] gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb) [Stenotrophomonas maltophilia K279a] Length = 159 Score = 96.5 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + + L+ + A + D A+++ L ID Sbjct: 27 ARRRAVQAIYAWQISGGNAQSLIAQFAHEQAREI---ADLAYFEALLHGVLDNRRDIDEA 83 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + + +LR++ ++ Y LDV V++ A+E AKR + H VN Sbjct: 84 LGPYLDRGIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAKRF-GSEHGHTYVN 142 Query: 126 SILRRVSREK 135 +L R + E Sbjct: 143 GVLDRAAVEW 152 >gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM 13965] gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM 13965] Length = 214 Score = 96.5 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 8/127 (6%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R ++ +L L L G+ + + R ID ++ Sbjct: 17 REIALQVLFQWEAAGHPLEAGLQWAAGEY---NPGEEVLAFAADLAGGVTRHRLDIDGLI 73 Query: 68 DFVL-ISSLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRDKENRHFAKL 123 L R + +LR+ + ++LY DV ++ AVE AKR + A+ Sbjct: 74 ARYARDWDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINEAVELAKRY-SSEDAARF 132 Query: 124 VNSILRR 130 +N IL + Sbjct: 133 INGILGQ 139 >gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16] gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16] Length = 130 Score = 96.5 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 10/123 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I + G +R +V + Sbjct: 1 MK-RHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVD-------PFLRQLVFGVIEHR 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +L L L R + +LR++ ++ Y DV +D AVE AK+ + + Sbjct: 53 AEIDELLRSNLEKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELAKKFGDWK 112 Query: 119 HFA 121 + Sbjct: 113 SGS 115 >gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4] gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7] gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3] gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4] gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7] gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3] Length = 134 Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + L D R + Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QSLDGVDVAYFRELFAGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D + L + + ++R++ ++ + DV ++ A+E AK + Sbjct: 58 KKTQLDELFIPHLDRPIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINEAIELAKAFGAD 117 Query: 118 RHFA 121 Sbjct: 118 ESHK 121 >gi|255079668|ref|XP_002503414.1| predicted protein [Micromonas sp. RCC299] gi|226518680|gb|ACO64672.1| predicted protein [Micromonas sp. RCC299] Length = 985 Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 74/478 (15%), Positives = 129/478 (26%), Gaps = 116/478 (24%) Query: 67 LDFVLISSLPR------------KKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 +D L R ++ LR + Q+ ++ + ++ Sbjct: 287 IDDALARPKKRPRSSDAAAASDSSAARVKNALRSA--QLDKRELLLWRKFGYGPSLFRQY 344 Query: 115 KENRHFAKLVN------SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + + + L + + +L + + + Sbjct: 345 YRAQGLVDGDDELEEVEACYSTALPITFRLHATDGRRASSLKARLRQLRDANLVHGLEWM 404 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDA 228 + E + V+ L E++ LP Sbjct: 405 PADEGWQAAAETRDAGRREKLHEAVAEVVDAGTSSGLLARQEAVSMLP------------ 452 Query: 229 SASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-------------LIVSGAKVTALDVSKRR 275 + V VLD+CAAPG KT Q V A D R Sbjct: 453 ---VLVLAPHLKPGDRVLDVCAAPGNKTMQLLERVSPPEDGDERGGVRGLVVANDAHPGR 509 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL-----------FDAVLVDAPCSSTGTIRR 324 ++ L+ + R A ++ + + + +DAVL D PCS GT R+ Sbjct: 510 VKTLQDAIKRHARSAREMESLVVTCSYGQDVPVPIFDDGIEGYDAVLADVPCSGDGTFRK 569 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 PD L Q + + VKPGG +++S CSL+ + E VV +L+ + Sbjct: 570 DPDALRRWHPGGGNALHATQVAVARRMTQLVKPGGHLLYSTCSLNPVEDEAVVAAILKEN 629 Query: 385 PIPVELVPLNSAYWKSIDMAMALS-----------PEGWIRI------------------ 415 P + A + +S +G R Sbjct: 630 PEFELVKGAMDAGAPGMRYRPGVSTWKVAEHAFKGQDGTSRFDSDSESESDDDVTLRWYD 689 Query: 416 -----------------TP-----------DMLEKIDGVSSGMDGFFAVALRRLIQPK 445 P + ++ GFF LRR + K Sbjct: 690 DYGTATAAGMPATEVSMWPPSQEVAKRMHLERCARLLPHDQDTGGFFIALLRRKAKKK 747 >gi|297670565|ref|XP_002813436.1| PREDICTED: putative methyltransferase NSUN3-like [Pongo abelii] Length = 340 Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 104/291 (35%), Gaps = 22/291 (7%) Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220 +L ++ + + L + +P Sbjct: 50 WQYAVLLNRFNYPFELEKDLHLKGYHTLFQGSLPNYPKSMKCYLSRTPGRIPSERHQIGN 109 Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSK---R 274 +++ +A++ +PV + VLDLCAAPGGK+ L+ + Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLM 169 Query: 275 RLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330 L + + L + E+D + FD VLVDAPCS+ + Sbjct: 170 WLRQTLESFIPQPLTNVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKA 229 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + Q +LL I ++PGGI+V+S C+L K ++++V+ ++L S + + Sbjct: 230 SCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHSNIMPV 289 Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 290 DIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|190347500|gb|EDK39780.2| hypothetical protein PGUG_03877 [Meyerozyma guilliermondii ATCC 6260] Length = 514 Score = 96.1 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 77/449 (17%), Positives = 152/449 (33%), Gaps = 57/449 (12%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88 L+ + ++ S + + A+V T+R+ P ++ V+ I + K Sbjct: 86 LNTQIFNNKHLSSSPK---HIYALVYSTMRYKPYLEEVIKKSKIRQSSKLKKLKVS---- 138 Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-----LQRIA 143 + ++ + + R + + +++L +R + EL ++ Sbjct: 139 ---------DSLLLLLVHDLLFSPRGRIESGKHPIKDAVLENKTRLQAELIKLKLRYKVK 189 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYID----LTVKFDIETWAHKLNAVMLP 199 ++ +P E+ E R+ I + + D L + A Sbjct: 190 TLADLPN-TVEQDETPIRWIRINTIVASEEEVMREDFFEKLKFVDSTDEIASGKIYRDTI 248 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKT 256 + E I + + G +QD ++ P Q+ + V+D CAAPG KT Sbjct: 249 VTNLYGIHPSEKITNTEAYKNGKIIIQDRASCFPAQILNGDPENQHEVVIDACAAPGNKT 308 Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAV 310 + V A + +R++ L+ + I D P Sbjct: 309 THLASFLPKNGVVHAFERDDKRVKTLKMMTSKALGPNKDLIQITHADFMTIIPSDFPKVT 368 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIV--------KSACFQRKLLLQGISFVKPGGI-V 361 + S +G+ + + D K A FQ K++ + F PG + Sbjct: 369 GIVVDPSCSGSGIFGRALEDAQSEQDRETIDTERLTKLASFQFKIVKHTMKF--PGARKI 426 Query: 362 VFSNCSLDKQDSEEVVQKVLRS----------SPIPVELVPLNSAYWKSIDMAMALSPEG 411 V+S CS+ ++E VV +L +P L + WK ++M+ P+ Sbjct: 427 VYSTCSIHPHENERVVMDLLADPEVKEQGWKLAPKEQVLPNWHRRGWKDEFVSMSRDPQV 486 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + + G GFFA R Sbjct: 487 CEQLAGGCVRAV-PKEDGGIGFFAACFIR 514 >gi|114588065|ref|XP_516606.2| PREDICTED: putative methyltransferase NSUN3 [Pan troglodytes] Length = 340 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 57/291 (19%), Positives = 107/291 (36%), Gaps = 22/291 (7%) Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220 +L ++ + + L + +P Sbjct: 50 WQYAVLLNRFNYPFELEKDLHLKGYHTLFQGSLPNYPKSMKCYLSRTPGRIPSERHQIGN 109 Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLE 277 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLR 169 Query: 278 KLRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330 LR + + + + E+D + FD VLVDAPCS+ + Sbjct: 170 WLRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKA 229 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + Q +LL I ++PGGI+V+S C+L K ++++V+ ++L S + + Sbjct: 230 SCRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPM 289 Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 290 DVKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|70778893|ref|NP_001020473.1| putative methyltransferase NSUN3 [Danio rerio] gi|123904618|sp|Q4KMK0|NSUN3_DANRE RecName: Full=Putative methyltransferase NSUN3; AltName: Full=NOL1/NOP2/Sun domain family member 3 gi|68534673|gb|AAH98531.1| Zgc:109983 [Danio rerio] Length = 367 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV +VLDLCAAPGGK+ ++ + +V + R + Sbjct: 142 KQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKSLAILQTATPGLLHCNEVDQHRHDW 201 Query: 279 LRCNLDRL------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRRHPDV 328 L L+ HL + + + + +D VLVDAPCS+ T H Sbjct: 202 LLKTLESYVPPSLRHLLSVTLQDGRSIGTMQPGAYDKVLVDAPCSNDRSWLYTPDTHRGE 261 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 +W + + + Q++LL ++ V+PGGIVV+S C++ + +++ VV++VL S P V Sbjct: 262 MWLK---ERTQLPLLQKELLCSALAAVRPGGIVVYSTCTMSRAENQSVVEEVLASYPG-V 317 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG-FFAVALRRL 441 EL + + S+ + + P + + + G + L+++ Sbjct: 318 ELQEMEQQFIDSLSDHFCFA-----HLHPSVGQLVIPQKGKTWGPMYVSQLKKI 366 >gi|66825641|ref|XP_646175.1| hypothetical protein DDB_G0269676 [Dictyostelium discoideum AX4] gi|60474251|gb|EAL72188.1| hypothetical protein DDB_G0269676 [Dictyostelium discoideum AX4] Length = 518 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 12/138 (8%) Query: 307 FDAVLVDAPCSSTGTIR---RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 +D V+VDA CS +IR ++ + D + + Q+ L+ G +KPGG +V+ Sbjct: 389 YDKVIVDAECSLDASIRHLLKYSKISRNLDLEKSKQLINLQKGLIENGFKLLKPGGHLVY 448 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS K +E VVQ +L P +L+P + I E R P Sbjct: 449 STCSFSKDQNESVVQYLLNKYPDTSKLIPSFTTQNDIIIPFSPGFIENTFRFYP------ 502 Query: 424 DGVSSGMDGFFAVALRRL 441 +G G F + ++ Sbjct: 503 ---KNGTSGMFISKIEKI 517 >gi|157876904|ref|XP_001686794.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129869|emb|CAJ09175.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 763 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 57/296 (19%), Positives = 98/296 (33%), Gaps = 75/296 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------------------I 260 Q+ + IP L N LD+CA+PG KTAQ+ Sbjct: 180 ISRQEEVSMIPPFLLDIQPNDVCLDMCASPGSKTAQMLVALGRHKVVPFNSDASPFPFQY 239 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK------------- 305 S V A ++ +R L + RL L DA + Sbjct: 240 DSDGLVIANELDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPEMSLQSQPGDADKTTA 299 Query: 306 ------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +L D CS GT+R+ P + + + Q ++ L+ ++ GG Sbjct: 300 AGTEVLRFDKILCDVVCSGDGTLRKAPHIFKLWSPKEAINLQKLQIEIALRACHLLRVGG 359 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-------------A 406 +V+S CSL+ ++E VV +++ + + LV + + Sbjct: 360 RLVYSTCSLNPVENEAVVAQIVHRTRGAMRLVDARALLPQLACAPGMTRWTVTDAKGCVF 419 Query: 407 LSPEGWIR--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443 +PEG + + P ++ GFF L ++ + Sbjct: 420 PAPEGNMHEALFPPHTPGGYSSAAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 475 >gi|46136457|ref|XP_389920.1| hypothetical protein FG09744.1 [Gibberella zeae PH-1] Length = 988 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 56/235 (23%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK------------LFDAVLV 312 + A D +R L L RL + DA + + FD +L Sbjct: 379 MLVANDSDYKRGHMLVHQLKRLSSPNLLVTNHDATQFPSIRLPAKDNKKPTYLKFDRILA 438 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQD 372 D PCS GT+R++P + + Q ++L++ + +K GG VVFS CS++ + Sbjct: 439 DVPCSGDGTLRKNPAIWKDWQPGSALGLHLTQIRILVRALQLLKVGGRVVFSTCSMNPVE 498 Query: 373 SEEVVQKVLRSS--PIPVELVPLNSAY------------------------WKSIDMAMA 406 +E VV + P VE+V ++ WK ++ Sbjct: 499 NESVVVSAIERCGGPANVEIVDCSNELPNLKRAPGMKDWKIMDKSARVWSSWKEVEDFAK 558 Query: 407 LSPEGWI----------RI-------TP-DMLEKIDGVSSGMDGFFAVALRRLIQ 443 + EG I R+ P + ++ GFF L + + Sbjct: 559 ENGEGVIPGRVVETMFPRLEGADCADLPLERCMRVYPHMQDTGGFFITVLEKKSE 613 >gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus Nc4] gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus Nc4] Length = 150 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 7/132 (5%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + L + + F+ DQ + ++ + Sbjct: 1 MSNNRSKARAAALQGLYQWQLTGQDVDTIDVGFI----FQGTRGIDQAYFQELLQGVPQQ 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D L L + +LR+ ++L+ D+ V++ A+E AKR Sbjct: 57 QQALDECLGPFLDRPINEVDPVECTILRIGAFELLFRSDIPYRVVLNEAIELAKRF-GAE 115 Query: 119 HFAKLVNSILRR 130 H + VN IL + Sbjct: 116 HGHRYVNGILDK 127 >gi|90080884|dbj|BAE89923.1| unnamed protein product [Macaca fascicularis] Length = 163 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 20/169 (11%) Query: 285 RLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIV 338 R + ++ E D P +L+D CS +G R T + Sbjct: 7 RAGISCCELAEEDFLAVSPSDPRYREVHYILLDPSCSGSGMPSRQLEEPGAGTPSPARLH 66 Query: 339 KSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 A FQ++ L ++F +K +V+S CSL ++++E+VV+ L+ +P L P A Sbjct: 67 ALAGFQQRALCHALTFPSLK---RLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA 123 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 W ++ + +R +P+ GFF + R+ P+ Sbjct: 124 -WPHRGLSTFPGAKHCLRASPETTLSG--------GFFIAVIERVEAPR 163 >gi|330795541|ref|XP_003285831.1| hypothetical protein DICPUDRAFT_76769 [Dictyostelium purpureum] gi|325084210|gb|EGC37643.1| hypothetical protein DICPUDRAFT_76769 [Dictyostelium purpureum] Length = 460 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 15/180 (8%) Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 KR++ K L Y L+D V+VDA CS +I + ++ Sbjct: 284 KRKINKRSSKKAIFDLKDLYFCNEFYMRYSSSTLYDKVIVDAECSLDASI--RHLIKHSK 341 Query: 333 D-----TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + Q+ L+ G VK GG +V+S CS K+ +EE+VQ +L Sbjct: 342 MGRYYAPEKSKQLTELQKGLIDNGFKLVKVGGHLVYSTCSFCKEQNEEIVQFLLNKYKDS 401 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRI------TPDMLEKIDGVSSGMDGFFAVALRRL 441 ++L+P + K + + E +I P+ +G G F ++ Sbjct: 402 IKLIPAFQEFEKDNNSSNKEDTEEECKIPYSIGYIPNTFR--FYPKNGTSGMFISKFEKI 459 >gi|300771943|ref|ZP_07081814.1| Nol1/Nop2/Sun family protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761329|gb|EFK58154.1| Nol1/Nop2/Sun family protein [Sphingobacterium spiritivorum ATCC 33861] Length = 392 Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 70/432 (16%), Positives = 133/432 (30%), Gaps = 76/432 (17%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + + L + D+ + D+ + + R Sbjct: 26 NKEPFSRFLTQFFKDNKQ--MGSSDRRMTSRLCYNFFR---------------------- 61 Query: 81 SLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 L + AQ+ V + + +L + + ++ L Sbjct: 62 -----LGTAAAQLPVTNRVVLAEFLCETESTVVSYYQPEWTPRLGDPVSDKIDFLVSLDL 116 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLP 199 + + + + L + I P + H L + Sbjct: 117 INKSDLFPFQQHL------SAPIDTELFLQSQLIQPDLFIRLKRGSEAKVKHILTEAGVA 170 Query: 200 TGGIRLK----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 +R + ++ L G G++ VQD S+ + L + S D CAA GGK Sbjct: 171 FENVRSQTLALRNGTNLQQLKG-LSGLYEVQDLSSQKTIDLIEAKDGESWWDACAASGGK 229 Query: 256 --TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDA 309 K+ D+ L L D + +D K+LFD Sbjct: 230 ALLFLDKYPSVKLLVSDIRMSILRNLDERFDLAGIKNYRKKVIDLTRDPLTILDKELFDG 289 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +++DAPCS +GT R P+++ I + QR++ + +KPG +++ CS+ Sbjct: 290 IILDAPCSGSGTWGRTPEMISQFRESAIASFSVLQRQIAKNVLRHLKPGKTLLYITCSVF 349 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 K+++E+VV + +E + Y + D Sbjct: 350 KEENEDVVNFICEHLGCELEEMVTLKGYEQQADT-------------------------- 383 Query: 430 MDGFFAVALRRL 441 FA LR+ Sbjct: 384 ---MFAARLRKK 392 >gi|255530906|ref|YP_003091278.1| Fmu (Sun) domain-containing protein [Pedobacter heparinus DSM 2366] gi|255343890|gb|ACU03216.1| Fmu (Sun) domain protein [Pedobacter heparinus DSM 2366] Length = 387 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 86/228 (37%), Gaps = 35/228 (15%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL 276 A + VQD S+ F D CAA GGK + ++ DV + L Sbjct: 188 AHKQYQVQDLSSQQTGSFFKPQAWDKWWDCCAASGGKSLLLYDLEPKVELLVSDVRESSL 247 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L + L +D FD +L+DAPCS +GT R P++L+ Sbjct: 248 HNLDERFQQAGLKKYQKKVLDLLQNNEQDLHHYEFDGILLDAPCSGSGTWGRTPEMLYYF 307 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + I + Q+K+ + ++K G +++ CS+ K+++E+VV +L + P+ +E + Sbjct: 308 EDHKISYFSGLQKKIAANVVKYLKEGKPLIYITCSVFKEENEDVVAFLLENLPLKLEKMQ 367 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + Y D F L + Sbjct: 368 VIKGYAAKADT-----------------------------MFVARLIK 386 >gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70] gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70] Length = 133 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 9/121 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + L V I L G +R +V Sbjct: 1 MMKRHEAREKALQALFQVDVGHIPPEEALQNVTGGKEVD-------PFLRQLVIGVTEHQ 53 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA+L L +L R + +LR++ ++ Y DV +D AVE AK+ + + Sbjct: 54 EEIDALLRANLEKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVELAKKFGDTK 113 Query: 119 H 119 Sbjct: 114 S 114 >gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus kaustophilus HTA426] gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3] gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426] gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3] Length = 130 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + RI L G +R +V + Sbjct: 1 MK-RHEAREKALQALFQIDVGRIPPDEALHNVTGGGDID-------PFLRQLVFGVVEHQ 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +L L +L R + +LR++ ++ Y DV +D AVE AK+ + + Sbjct: 53 EEIDELLRANLEKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELAKKFGDWK 112 Query: 119 HFA 121 + Sbjct: 113 SGS 115 >gi|324513565|gb|ADY45571.1| Methyltransferase [Ascaris suum] Length = 438 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 80/458 (17%), Positives = 154/458 (33%), Gaps = 49/458 (10%) Query: 12 SHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + L+ E S+ S +++ + + T+R+ +D +L+ Sbjct: 1 MDALY--YESAAVVKQALNREKSVRSSVYSSSYKNKKRLLRLCCETIRYRAFLDGLLECA 58 Query: 71 LISSLPRKKYS-LQQLLRVSVAQILY----------LDVADYAVVDLAVEQAKRDKENRH 119 I +L + + LL V + + L+ L + + +QA++ Sbjct: 59 QIRALLKNEVISDFYLLYVLLYEFLFGRGLRNIDKRLSSPILSAAMIIRKQAEK-LTEAG 117 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 + + + K E + + + ++D Y++ Sbjct: 118 RGIKEERSESGRTWVIPRYARVNTIKWTFEDALKALKEEEWIVKEMDDVTDGSTYRAYVE 177 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 ++ V + + + S +G +QD ++ + L Sbjct: 178 NMEWNEV--------YVDPHIENLLIFRGDADLHSYWMVVDGYVLLQDKASCLSALLLKP 229 Query: 240 LNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEM 296 V D+CAAPG KT+ + KV A+D S R+E LR L + I Sbjct: 230 KPGCEVFDVCAAPGMKTSHIAALLSGRGKVWAMDKSAERVETLRAMLQNAGVSNVSIFCG 289 Query: 297 DA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT---RDTDDIVKSACFQRKLLL 349 D LVD PCS +G ++R + D + + Q +L Sbjct: 290 DFLRVDVFDKKFAKVRYALVDPPCSGSGIVKRLDKFIDDANGVDERRLQALSNLQAMILK 349 Query: 350 QGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAM 405 + ++ +V+S CS+ +++E VV++VL ELV + D Sbjct: 350 HAMKLPNLR---RLVYSTCSIHTEENEAVVEEVLNDEHIKEDFELVHAMPGWSHRGDQQY 406 Query: 406 ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 E +R +P +GFF R+ + Sbjct: 407 EFG-EKCLRASP--------ALDLTNGFFVAVFRKKRK 435 >gi|119600300|gb|EAW79894.1| NOL1/NOP2/Sun domain family, member 3, isoform CRA_b [Homo sapiens] Length = 336 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 107 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLRW 166 Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 LR + + + + E+D + FD VLVDAPCS+ + + Sbjct: 167 LRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAS 226 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGGI+V+S C+L K ++++V+ ++L S + + Sbjct: 227 CRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMD 286 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 287 IKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 329 >gi|11545785|ref|NP_071355.1| putative methyltransferase NSUN3 [Homo sapiens] gi|74733593|sp|Q9H649|NSUN3_HUMAN RecName: Full=Putative methyltransferase NSUN3; AltName: Full=NOL1/NOP2/Sun domain family member 3 gi|10439061|dbj|BAB15417.1| unnamed protein product [Homo sapiens] gi|18088290|gb|AAH20602.1| NOL1/NOP2/Sun domain family, member 3 [Homo sapiens] gi|119600299|gb|EAW79893.1| NOL1/NOP2/Sun domain family, member 3, isoform CRA_a [Homo sapiens] Length = 340 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 111 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLRW 170 Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 LR + + + + E+D + FD VLVDAPCS+ + + Sbjct: 171 LRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAS 230 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGGI+V+S C+L K ++++V+ ++L S + + Sbjct: 231 CRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMD 290 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 291 IKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|283852982|ref|ZP_06370240.1| Fmu (Sun) domain protein [Desulfovibrio sp. FW1012B] gi|283571592|gb|EFC19594.1| Fmu (Sun) domain protein [Desulfovibrio sp. FW1012B] Length = 427 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 21/272 (7%) Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP-------GFAEGVWWVQDASASI 232 + ++ L A IV+ P G +QD S+ + Sbjct: 23 VCSPSEVPLVEALLGATGHVAEPEPFSPWCRRIVAEPTALGASLAARFGCIHIQDRSSML 82 Query: 233 PVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 P L VLD+CAAPGGKT L V + S RL LR L R L Sbjct: 83 PPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLGNEPSPDRLATLRQTLFRESLA 142 Query: 290 AEDII-EMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D + P+ F +L+D PCS GT+ ++P + + QRKLL Sbjct: 143 NAATCSQADLSPHLPEGAFTHILLDPPCSGWGTLDKNPQAAKIWSGEKVAPLIALQRKLL 202 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + + PGG +++S C+ + ++E+ + L S P+ + + + +S Sbjct: 203 ATAANLLAPGGRLLYSTCTTNVAENEDQTRFALESLPLVPVPLAPPAGFVFEAPRRDDVS 262 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 G +R+ D +S GF+ + Sbjct: 263 --GVLRV--------DSAASAAQGFYMAFFEK 284 >gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis HAW-EB3] gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3] Length = 134 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + + + + D R +++ T Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTE---QKIDGIDVAYFRELLSGTAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID + + + +LR++ ++ + DV ++ A+E AK Sbjct: 58 KQAQIDEQIIPHIERPYNEVSPIEKAVLRLATYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN IL + Sbjct: 117 EDGHKFVNGILDK 129 >gi|71425173|ref|XP_813031.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70877878|gb|EAN91180.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 949 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 95/285 (33%), Gaps = 67/285 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------K 265 E + Q S+ +PV L +VLDLCA+PG KT + Sbjct: 294 NERLISFQSTSSMLPVLLLDPRPGEAVLDLCASPGSKTTLIHDYMFGISSSSKSLLATGC 353 Query: 266 VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTG 320 + A D R L L A I+ F P +D VLVDAPCS G Sbjct: 354 IVANDAIFSRRRTLSQRLQSFSPSIAVTQIQGQTFPAQPIASGGVRYDKVLVDAPCSGEG 413 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + R ++ Q LL + GG VV+S C+L+ ++E V+ V Sbjct: 414 RMHRDVMSWRMWHPLKAMEFFTTQVSLLRHAVELCAAGGCVVYSTCTLNPLENEAVISTV 473 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------------P 409 L + + P + LS P Sbjct: 474 LADGEVELIRPPHFMTADSGWHFSRGLSHWLVPSRAGGFLHTFAEAEAKGEETAVELFPP 533 Query: 410 EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 EG +R+ P +SG +GFF ALR++ Q Sbjct: 534 EGNGEIQKALESCCLRVLPHR-------NSGAEGFFLAALRKVQQ 571 >gi|198419141|ref|XP_002127214.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 6 [Ciona intestinalis] Length = 445 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 52/277 (18%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDV 271 L + Q+ + I + VLD+CAAPGGKT+ ++ ++ A+D Sbjct: 166 LNDVLPSKIFAQNLPSIIVGHVLNPQEGDIVLDMCAAPGGKTSHIVSLLRGRGRLVAVDR 225 Query: 272 SKRRLEKLRCNLDRLHLYA--EDIIEMDAFDYCPKK-------------LFDAVLVDAPC 316 S ++EK++ N +L A + D+ C FD +L+DAPC Sbjct: 226 SSSKVEKIKQNAAKLGQMADVLTVFTADSRKLCSDDSGDKSEENKFSSSYFDKILLDAPC 285 Query: 317 SSTG---TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 S+ G + +I QR+L + +KPGG +V+S C+ ++ Sbjct: 286 SALGQRPKCWLENQSNVNK-MKNIKSYPALQRQLFNTAVRLLKPGGTLVYSTCTTTVDEN 344 Query: 374 EEVVQKVLRSSP--------------IPVELVPLNSAYWKSIDMAMALSPEGWIR----- 414 E +V+ L P E+ L+ + S+ SP ++ Sbjct: 345 EGLVEWALDKHPCLKLSQHTPHIGGTGRQEVTNLSPSNLHSLQYFTPGSPVTCVQEHHNV 404 Query: 415 -ITPDMLEKIDGVSSGMD----------GFFAVALRR 440 P + + +++ +D GFF + Sbjct: 405 HTIPKLSNNVPSLTNLLDLEAECNQDSIGFFIAKFIK 441 >gi|213027404|ref|ZP_03341851.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 211 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 11/101 (10%) Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QR+LL ++PGG +V+S C+L++Q++E V + + VE +PL + Sbjct: 3 AATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP-- 60 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D AL+PEG++ + P + + GFF LR++ Sbjct: 61 -DADRALTPEGFLHVFPQIYDCE--------GFFVARLRKM 92 >gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3] gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3] Length = 144 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ IV +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASTGEIDAQLRGAQGY---EKADRELLETIVYGVVR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + A+L L + + + +L ++ ++ + + V++ A+E K + Sbjct: 58 EHADLAAILAPNLDRPIEQLSPVERAVLLMATFELKHQIETPYRVVINEAIELTKTFGGS 117 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 118 DG-HKYVNGVLDK 129 >gi|260942277|ref|XP_002615437.1| hypothetical protein CLUG_04319 [Clavispora lusitaniae ATCC 42720] gi|238850727|gb|EEQ40191.1| hypothetical protein CLUG_04319 [Clavispora lusitaniae ATCC 42720] Length = 479 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 83/425 (19%), Positives = 140/425 (32%), Gaps = 39/425 (9%) Query: 49 VRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQ-LLRVSVAQILYLDVADYAVVDL 106 V A+V TL++ I+ +L + S KK ++ LL + + L+ Sbjct: 55 VYALVISTLKYKEYIEEILRKSKIQQSPEIKKLKMKDSLLMLMIHDFLFSAKGRIQSGKH 114 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 +++A + R A+L L+ +L + R+ Sbjct: 115 PMKEAFLLNKTRLQAELTKLKLKHKVTSVEKLPLKEGIDEDETPVRWIRINTIKINSEQF 174 Query: 167 AISDACISPLYIDLTVKFDIETWAHK-LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWV 225 + S L I + + E I S P + +G + Sbjct: 175 FKKHSFFSQ----LEPVSSIAEITQPGVIYHDEHIQNLYGLHPREKITSTPAYLQGEIII 230 Query: 226 QDASASIPV---QLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKL 279 QD ++ P + V+D CAAPG KT + V A + RR++ L Sbjct: 231 QDRASCFPAEILNNDPNDVHSEVIDACAAPGNKTTHAASFVGPKGVVYAFERDNRRVKVL 290 Query: 280 RCNLDRLHLYA----EDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR-------HP 326 + ++ A D P ++VD CS +G R Sbjct: 291 KTMCEKATGKAKKSLIHPTHADFTTIAPSDFPSVTGMIVDPSCSGSGIFGRAIEDANSQE 350 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----- 381 DT+ + K A FQ K++ +SF K VV+S CS+ ++E VV +L Sbjct: 351 QAREEIDTERLNKLAGFQFKIMKHALSFPKVH-KVVYSTCSIHPHENERVVVDLLSDAEI 409 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALS------PEGWIRITPDMLEKIDGVSSGMDGFFA 435 + +E W+ S E + + + + G GFFA Sbjct: 410 QKQGWKLEKRQFVIPSWERRGWEQEFSSLCDGDKEKCLEMAGGCVRSV-PKEDGGIGFFA 468 Query: 436 VALRR 440 R Sbjct: 469 ACFVR 473 >gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisA53] gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53] Length = 174 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + L + + + + IV+ +R Sbjct: 30 AARLAAVQALYQMEVGGAGLNDIFAEFESHWLGHEVEGEQYLPAEAAFFQDIVSGVVRDQ 89 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++D L L R + L+ ++R ++ + DV VV V+ A E Sbjct: 90 LQLDPLIDEALSRGWPLARIEAILRAVMRAGAYELQHRKDVPARVVVSEYVDVANAFVEG 149 Query: 118 RHFAKLVNSILRRVSREKIE 137 +VN++L +++R+ Sbjct: 150 DE-TGMVNAVLDQIARQFRP 168 >gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911] gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL B-14911] Length = 130 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + + + +D + +V L Sbjct: 1 MKRRT-AREKALQALFQIDVSQADPSEAIDHVLEGEEGDE-------YLTLVVTGVLENK 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID+++ L L R + LLR V ++ Y +V V+D A+E AK + Sbjct: 53 EEIDSLIKQYLEKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIAK-IFGDD 111 Query: 119 HFAKLVNSILRR 130 + ++ +N +L + Sbjct: 112 NSSRFINGVLSK 123 >gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885] gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885] Length = 237 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 8/126 (6%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ +L L L+ G+ + + R ID ++ Sbjct: 18 EIALQVLFQWEAAGNPLEAGLEWAAGEYDP---GEEVLAFAAELCRGVTRRRLDIDGLIA 74 Query: 69 FVL-ISSLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRDKENRHFAKLV 124 L R + +LR+ + ++LY DV ++ AVE AKR + A+ V Sbjct: 75 RYARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAVELAKRY-SSEDAARFV 133 Query: 125 NSILRR 130 N IL + Sbjct: 134 NGILGQ 139 >gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM 2581] gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM 2581] Length = 166 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 12/140 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ----------RDQILVRA 51 +S AR ++ L S+ + G A L D L Sbjct: 13 QSRRAARELAVQGLYQWEMTGKSVATVEAEFRGQVADEDLEDHENWHKVMELADLALFHE 72 Query: 52 IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110 +++ + +ID L VL L +LR+ ++ Y L+V AV++ VE Sbjct: 73 LLSGVAQHCEKIDEQLAPVLDRRLEDLDAIELAILRLGTYELAYRLEVPYRAVINEGVEL 132 Query: 111 AKRDKENRHFAKLVNSILRR 130 AK + VN IL + Sbjct: 133 AKSFGATEG-HRYVNGILDK 151 >gi|34783691|gb|AAH57238.1| NOL1/NOP2/Sun domain family, member 3 [Homo sapiens] gi|312151190|gb|ADQ32107.1| NOL1/NOP2/Sun domain family, member 3 [synthetic construct] Length = 340 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 111 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSLRLRW 170 Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 LR + + + + E+D + FD VLVDAPCS+ + + Sbjct: 171 LRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAS 230 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGGI+V+S C+L K ++++V+ ++L S + + Sbjct: 231 CRISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMD 290 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 S D A + + + + PD + + L++ Sbjct: 291 IKGIVRTCSHDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|56118835|ref|NP_001007930.1| putative methyltransferase NSUN4 [Xenopus (Silurana) tropicalis] gi|82181511|sp|Q66KI9|NSUN4_XENTR RecName: Full=Putative methyltransferase NSUN4; AltName: Full=NOL1/NOP2/Sun domain family member 4 gi|51512985|gb|AAH80376.1| NOL1/NOP2/Sun domain family, member 4 [Xenopus (Silurana) tropicalis] gi|89271355|emb|CAJ83825.1| NOL1/NOP2/Sun domain family, member 4 [Xenopus (Silurana) tropicalis] Length = 406 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 69/277 (24%), Positives = 110/277 (39%), Gaps = 29/277 (10%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLP-----GFAEGVWWVQDASASIPVQLFGTLN 241 +T A L + + T K I P F +++ DA++ +PV + Sbjct: 136 KTQATNLLSSLSNTKLTCFKFSRGDISRFPQSRSDSFGLLEYYLMDAASLLPVLALDVQH 195 Query: 242 NLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDRLHLYA------EDI 293 SVLDLCAAPGGKT L+ + A D+S R +L L A I Sbjct: 196 GHSVLDLCAAPGGKTLALLQTENCQYLAANDLSTSRSSRLHRVLRSYVPRAQRTEHKVCI 255 Query: 294 IEMDA--FDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 D + +D VLVD PC++ + ++ T Q +LL+ Sbjct: 256 TSQDGRLWGDAEANTYDRVLVDVPCTTDRHSLLEEENNIFHRIRTKQRQMLPLLQAELLV 315 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMAL 407 G+ V+PGG VV+S CSL + +E VV++ L +S V + P + + ++ + Sbjct: 316 AGLRAVRPGGEVVYSTCSLSQLQNECVVERAVELAASDHGVHVKPQDLSCFREVFKNTFN 375 Query: 408 SPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRRL 441 +G + P + F L R+ Sbjct: 376 FFQGCRVGELVLPHLTANFGP-------MFFCKLLRI 405 >gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium japonicum USDA 110] gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + + R +V+ +R Sbjct: 21 AARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDTYLPAEAAFFRDVVSGVVRDQ 80 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++D L L R + L+ +LR ++ + DV VV V+ A + Sbjct: 81 KKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQHRKDVPGRVVVSEYVDVANAFV-D 139 Query: 118 RHFAKLVNSILRRVSREK 135 R +VN++L ++ R+ Sbjct: 140 REETGMVNAVLDQIGRQF 157 >gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus TB-2] gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus TB-2] Length = 136 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +AR L ++ R + + + ++N L + Sbjct: 1 MATITHAREAVIQTLYAKELGN---DDAINQFDELLKERKIKGQKAEFAKKLLNGVLEHI 57 Query: 61 PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ + ++ S R +Q+LR + +I Y D V+D AV+ AK E++ Sbjct: 58 NEIDEIIKNHLIDWSFDRLDKVDKQILRTGIYEIKYTDTPYQIVIDEAVKIAKNFSEDKS 117 Query: 120 FAKLVNSILRR 130 +N IL + Sbjct: 118 -KNFINGILDK 127 >gi|146104384|ref|XP_001469810.1| hypothetical protein [Leishmania infantum] gi|134074180|emb|CAM72922.1| conserved hypothetical protein [Leishmania infantum JPCM5] gi|322503582|emb|CBZ38668.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 767 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 98/296 (33%), Gaps = 75/296 (25%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL----------------------I 260 Q+ + IP L LD+CA+PG KTAQ+ Sbjct: 180 ISRQEEVSMIPPFLLDIQPTDVCLDMCASPGSKTAQMLVALGRHKVVPFDSDASPFPFQY 239 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKK------------- 305 S V A ++ +R L + RL L DA + Sbjct: 240 DSDGLVIANELDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPEMSLQPQPGDADKTTA 299 Query: 306 ------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 FD +L D CS GT+R+ P + + + Q ++ L+ ++ GG Sbjct: 300 AGTQVLRFDKILCDVVCSGDGTLRKAPHIFKLWSPKEAINLQKLQIEIALRACHLLRVGG 359 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM-------------A 406 +V+S CSL+ ++E VV +++ + + LV + + + Sbjct: 360 RLVYSTCSLNPVENEAVVAQIVYRTRGAMRLVDARALLPQLVCAPGMTRWTVTDAKGRVF 419 Query: 407 LSPEGWIR--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443 +PEG + + P ++ GFF L ++ + Sbjct: 420 PAPEGNMHEALFPPHTPGGYSSAAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 475 >gi|256425787|ref|YP_003126440.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588] gi|256040695|gb|ACU64239.1| Fmu (Sun) domain protein [Chitinophaga pinensis DSM 2588] Length = 386 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 8/172 (4%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRL 276 + + +QDAS+ LF D CAA GGK+ G K+ DV + Sbjct: 186 DKSWYEIQDASSQQVGALFTPKAGELWWDSCAASGGKSILLLDKQPGVKLLVSDVRASII 245 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDY-----CPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 + L + + I MD +LFD +++DAPCS +GT R P+ + Sbjct: 246 QNLHQRFKEAGIRQYESIVMDLTAPVTSSAIKDRLFDHIILDAPCSGSGTWGRTPENMSF 305 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 I + Q+K+ + +KPGG +++ CS+ +Q++EEVV L Sbjct: 306 FTEKQITEYQQLQQKIAANIVHLLKPGGTLIYITCSVFRQENEEVV-AFLEK 356 >gi|154345848|ref|XP_001568861.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066203|emb|CAM43993.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 761 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 32/169 (18%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD +L D CS GT+R+ P + + + Q ++ L+ ++ GG +V+S C Sbjct: 306 FDKILCDVVCSGDGTLRKAPHIFKIWSPREAINLQKLQIEIALRACHLLRVGGRLVYSTC 365 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS-------------PEGWI 413 SL+ ++E VV +++ + + LV + + + PEG + Sbjct: 366 SLNPVENEAVVTQIVHRTRGALRLVDARPLLPRLVCAPGMTTWTVTDASGRVFAAPEGNM 425 Query: 414 R--ITPDMLE-----------------KIDGVSSGMDGFFAVALRRLIQ 443 + P ++ GFF L ++ + Sbjct: 426 HEALFPPHTPGGYSSTAVDALDLSLCMRLFPTHCKGGGFFVAVLDKVSE 474 >gi|227540221|ref|ZP_03970270.1| Fmu (Sun) domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227239945|gb|EEI89960.1| Fmu (Sun) domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 390 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 69/433 (15%), Positives = 140/433 (32%), Gaps = 78/433 (18%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKY 80 + + L + D+ + D+ + + R Sbjct: 24 NKEPFSRFLTQFFKDNKQ--MGSSDRRMTSRLCYNFFR---------------------- 59 Query: 81 SLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELL 139 L + Q+ D V + + ++L + + ++ L Sbjct: 60 -----LGTAATQLSVTDRVVLAEFLCETESTVVSYYKPDWTSRLGDPVSDKIDFLVGLDL 114 Query: 140 QRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE-TWAHKLNAVML 198 + + + + ++ + + + + +K E H L + Sbjct: 115 INRSDLFPLQQHLSAPID-------TELFLQSQLVQPDLFIRLKRGSEAKVKHILTEAEV 167 Query: 199 PTGGIRLK----ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 IR ++ L G G++ VQD S+ + L + S D CAA GG Sbjct: 168 TFENIRPHTLALRNGTNLQQLKG-LSGLYEVQDLSSQKTIDLIEAKDGESWWDACAASGG 226 Query: 255 K--TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFD 308 K K+ D+ L L D + +D K+LFD Sbjct: 227 KALLFLDKYPSVKLLVSDIRMSILRNLDERFDFAGIKNYRKKVIDLTRDPLTILDKELFD 286 Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 +++DAPCS +GT R P+++ I + QR++ + +KPG +++ CS+ Sbjct: 287 GIILDAPCSGSGTWGRTPEMISQFKESAIENFSVLQRQIAKNVLRHLKPGKTLLYITCSV 346 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 K+++E+VV + ++ ++ +G+ + Sbjct: 347 FKEENEDVVN-FISEH--------------LGCELEEMVTLKGYEQ-------------- 377 Query: 429 GMDGFFAVALRRL 441 D FA LR+ Sbjct: 378 QADTMFAARLRKK 390 >gi|325104657|ref|YP_004274311.1| Fmu (Sun) domain protein [Pedobacter saltans DSM 12145] gi|324973505|gb|ADY52489.1| Fmu (Sun) domain protein [Pedobacter saltans DSM 12145] Length = 387 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 69/436 (15%), Positives = 133/436 (30%), Gaps = 64/436 (14%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + ++ L L Y + + RD+ + ++ R ++ + Sbjct: 10 VQNILASYKEDQPLHRFLTQFYKRNKQ--MGSRDRKISSQLIYNYYRMGKALEQL----- 62 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 L R+ VA+ L + D + K ++S + Sbjct: 63 --PLQD---------RLVVAEFL----------CNQEKSTYLDYYKPEWVKYLSSPISEK 101 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 + E + + P E + + + + + D E Sbjct: 102 IDKVKESYPTFSMNDVFPFSEH-LSTEVNKGEFIESQFVQPDLFVRVKRSATADFEFRLR 160 Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + I + + +G + VQD S+ +F D CAA Sbjct: 161 QQEVSYKKLSEITYAFKNGAKLDQIILDKGSFEVQDLSSQKVGDVFKPQRWDKWWDCCAA 220 Query: 252 PGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKK 305 GGK+ K+ D+ + LE L+ + +D Sbjct: 221 SGGKSLMLLDEQPDIKLLVSDIRESILENLKERFIEAGIKGFQAKVLDLTQNPAVFLHDY 280 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD +++DAPCS +GT R P+++ I QRK+ I F+K G +++ Sbjct: 281 EFDGIILDAPCSGSGTWGRTPEMIAQFSKSKISFFRDLQRKIASNVIPFLKQGKPLIYIT 340 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ K+++EE + + + +E + I G Sbjct: 341 CSVFKEENEEQTDWLCKQFGLTLE-----------------------------SQQIIKG 371 Query: 426 VSSGMDGFFAVALRRL 441 D F L ++ Sbjct: 372 YKDKADSMFVARLLKV 387 >gi|322490211|emb|CBZ25472.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1168 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +D VLVDAPCS G + R ++ Q LL + + K GG +V++ C Sbjct: 523 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 582 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413 +L+ ++E VV VLR+ VEL+P + ++ G + Sbjct: 583 TLNPLENEAVVAAVLRACGGAVELIPPPRPLPRRTELQTEEDSGGSVPPLCLTAGLRSWD 642 Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428 R+ PDM ++ + Sbjct: 643 VPSGAGGFLRSAAEAYAQGESAARLPPDMFAPGSVGAEGDRADISGALQRCCRRVMPHLN 702 Query: 429 GM-DGFFAVALRRLI 442 G DGFF L + Sbjct: 703 GNADGFFVAVLEKRA 717 >gi|297802108|ref|XP_002868938.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314774|gb|EFH45197.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 628 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 77/255 (30%), Gaps = 77/255 (30%) Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--------------- 306 V A DV +R L R + + + Sbjct: 59 PNGMVVANDVDYKRCNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASEINPHPI 118 Query: 307 ----FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD VL D PCS GT+ R +W R++ Q L ++ +S +K GG ++ Sbjct: 119 DQLLFDRVLCDVPCSGDGTL-RKAPDIWRRNSGSGNGLHSLQVVLAMR-LSLLKVGGRMI 176 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA------------------ 404 +S CS++ + E VV ++LR VELV ++ + I Sbjct: 177 YSTCSMNPIEDEAVVAEILRRCGCSVELVDVSDKLPELIRRPGLTKWKVHDRGGWYRSYK 236 Query: 405 --MALSPEGWIR-ITP-----------------------------------DMLEKIDGV 426 +G +R + P + +I Sbjct: 237 DVPKSQRDGVLRSMFPSGKSDKDSTGGGNSYEEMAYISSEESAVEVCDLPLERCMRILPH 296 Query: 427 SSGMDGFFAVALRRL 441 GFF L ++ Sbjct: 297 DQNTGGFFIAVLHKV 311 >gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp. Y412MC61] gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52] gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61] gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52] Length = 130 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + RI L G +R +V + Sbjct: 1 MK-RHEAREKALQALFQIDVGRIPPDEALHNVTGGGDID-------PFLRQLVFGVVEHQ 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +L L +L R + +LR++ ++ Y DV +D AVE AK + + Sbjct: 53 EEIDELLRANLEKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELAKTFGDWK 112 Query: 119 HFA 121 + Sbjct: 113 SGS 115 >gi|118384004|ref|XP_001025155.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila] gi|89306922|gb|EAS04910.1| NOL1/NOP2/sun family protein [Tetrahymena thermophila SB210] Length = 1153 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 22/208 (10%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------TAL 269 G+ Q+ + +P L + + D+CAAPG KTAQL+ A Sbjct: 235 DSGLISRQELVSMLPPLLLDVKPDDIIFDMCAAPGSKTAQLLELMYTQGGINTKGAVVAN 294 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDAPCS 317 DV ++R L + R++ +I A + K FD V D PCS Sbjct: 295 DVDQKRAYLLTHQVCRINPSGLVVINHPAQFFPTLQDPTSNQAYDQKFYFDKVQADVPCS 354 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 G R+ P +T D Q +L + ++ K GG V++S CS++ + E V+ Sbjct: 355 GDGATRKIPTQWRNWNTRDGQVLHPLQLAILQRALTLCKVGGYVLYSTCSINPIEDEAVI 414 Query: 378 -QKVLRSSPIPVELVPLNSAYWKSIDMA 404 + R+S +EL+ +++ + + Sbjct: 415 TEAFRRASQGSIELIDIHTKFPELKGRR 442 >gi|307111656|gb|EFN59890.1| hypothetical protein CHLNCDRAFT_132901 [Chlorella variabilis] Length = 585 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 P FD VL DAPC++ G P ++ + ++ ++A +QRKLL ++ V+PGG + Sbjct: 443 FPPASFDHVLCDAPCTALGL---RPRLVHRQTLRELDQTAAYQRKLLRVAVALVRPGGAL 499 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 VFS CS++ ++E V+ +L + P + + + L ++ + Sbjct: 500 VFSTCSINPGENEANVRWLLDTFPGMRLVQQAPRLGQPGLTGNVVLPCGRTQQLLSEKEA 559 Query: 422 KIDGVSS-----GMDGFFAVALRR 440 + GFF + Sbjct: 560 ALVQRFDPSAPLDTIGFFVAKFEK 583 >gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae BGR1] gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1] Length = 145 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ I+ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASTGEIDAQLRGAQGY---DKADRELLETILYGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + AVL L L + + +L ++ ++ + + V++ AVE K + Sbjct: 58 EHADLAAVLTPCLDRPLEQLSPVERAVLLIATFELKHQIETPYRVVINEAVELTKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas maltophilia R551-3] gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3] Length = 159 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + + L+ + A + D A+++ L ID Sbjct: 27 ARRRAVQAIYAWQISGGNAQSLIAQFAHEQAREI---ADLAYFEALMHGVLDNRRDIDEA 83 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + + +LR++ ++ Y LDV V++ A+E AKR + H VN Sbjct: 84 LGPYLDRGIEEVDAIERAVLRLAGYELRYRLDVPYRVVINEAIESAKRF-GSEHGHTYVN 142 Query: 126 SILRR 130 +L R Sbjct: 143 GVLDR 147 >gi|83282478|ref|XP_729788.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23488576|gb|EAA21353.1| similar to yeast ncl1-related [Plasmodium yoelii yoelii] Length = 1154 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 96/312 (30%), Gaps = 52/312 (16%) Query: 179 DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + K V P + + +I+ + + + + + Sbjct: 246 SIDTFHSAMENPKKEIDVQDPINEENIYKTYYNILENNLYDDEFFKYILNADHNLYNEYK 305 Query: 239 TLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII-EMD 297 L + + G A K + + + + Sbjct: 306 NLISNNN-----PTGVVVANDANFKRCCMLFHRLKNIHSNCLIVTNNNAVSFPYLYLKNK 360 Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 D K FD+VL D PCS GT+R+ ++ + + Q +L + I VK Sbjct: 361 VDDSFEKIYFDSVLCDVPCSGDGTLRKDRNIWINWNPLNAYNLFQLQVNILKRSIELVKE 420 Query: 358 GGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALS------- 408 GG V++S CSL+ ++E V+ +V L + ++L+ + K ++ L+ Sbjct: 421 GGYVIYSTCSLNPIENEAVICEVFNLLHNSESLKLINFENELVKKLNYREGLTEWKLLID 480 Query: 409 ------------------PEGWIRIT---------PD----------MLEKIDGVSSGMD 431 PE + +I P+ +++ Sbjct: 481 DKWFNTYDEFIDYLKNIQPEKFKKIYEKIKNGMFTPNKEFMENINLKYVKRFFPHHYNAG 540 Query: 432 GFFAVALRRLIQ 443 GFF + + Q Sbjct: 541 GFFIALIEKRGQ 552 >gi|330836709|ref|YP_004411350.1| Fmu (Sun) domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748612|gb|AEC01968.1| Fmu (Sun) domain protein [Spirochaeta coccoides DSM 17374] Length = 262 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 26/229 (11%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLR 280 + D ++ I + + +VLD+CAAPGGKT A + + A D S R +L Sbjct: 50 YFMDEASIIAARALPVRPHDAVLDMCAAPGGKTLVLATRLGQDGSLVANDRSASRRSRLH 109 Query: 281 -------CNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 R + + + + ++D++L+DAPCSS + P L Sbjct: 110 AVLDGYLPAEIRAKVT-VTGHDSTRWSLHQRDMYDSILLDAPCSSERHVLTTPSALKEWS 168 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + + Q +L + VKP G +++S C+L ++E+V+QK+L E VPL Sbjct: 169 PSRPKRLSVQQFAMLAAALDAVKPEGYILYSTCALAPIENEQVIQKLLERRKGRCETVPL 228 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + ++ D G+I I PD + + + +RR Sbjct: 229 SFEAAENRDA-------GYI-ILPDTADGRGPL-------YFCLIRRTA 262 >gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H] gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H] Length = 160 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------LSQRDQILVRAIV 53 +S AR+ + L + + ++ + D L + IV Sbjct: 14 RSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGHIPDADLKLFQEIV 73 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 R IDA L VL LPR L+ LLR +V +I D D +++ ++ A Sbjct: 74 LGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEI-GTDTPDRIIINEYLDVA 132 Query: 112 KRDKENR 118 Sbjct: 133 HGFFSGD 139 >gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17] gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17] Length = 166 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + +++ + D+ +S+ D + R +++ T R +D + Sbjct: 33 ARGMAMQGLYQRHFSKSAISNIEAEFMVDN---DMSKVDLLYFRDLLHGTSREQAELDRL 89 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ++ L L ++R+ ++ + LDV V++ +E AKR Sbjct: 90 IEPFLDRPLQEVDPVELAIVRLGAYELKFRLDVPYKVVINEGIEMAKRFGGTEG 143 >gi|300814531|ref|ZP_07094787.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511358|gb|EFK38602.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 238 Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 88/233 (37%), Gaps = 20/233 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 N R + ++ V K L L++ +S RD V+ I +R +D Sbjct: 3 NIRQKALFIIDNVYNKGAFLEEQLNIF----KQSNISDRDFTFVKNITTGVIRNRTYLDY 58 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 V+ + + +L +++ Q +LD + +Y++VD +V+ AK N+ + V Sbjct: 59 VIKINSKIRFKKIHKIIAIILEMAIYQCYFLDKIPNYSIVDESVKLAK-LYGNKGSSSFV 117 Query: 125 NSILRRVSREKI------ELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYI 178 N+ILR + + + ++ ++ P+++ + YG E + A Sbjct: 118 NAILRNIVSKDKVVVKIEDSIENLSVYYSHPKFYTKYFYENYGVELTRNLLKANNQESDF 177 Query: 179 DLTVK---FDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFAEGVW 223 + V + + L + E P++I F EG + Sbjct: 178 VIRVNTLKTKKDNLSKLLKYENFNVRDGLVPYSLIIENPKNIFDTQAFREGFF 230 >gi|309356148|emb|CAP37833.2| hypothetical protein CBG_20899 [Caenorhabditis briggsae AF16] Length = 784 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 71/451 (15%), Positives = 147/451 (32%), Gaps = 61/451 (13%) Query: 32 EYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK--KYSLQ---QLL 86 + L + L+R + +L+F P D +L L + ++ LL Sbjct: 350 YRQWIQGKFLKPNKKALLR-LSCESLKFRPVFDEILK---DKELRKMKNDPNINGSVDLL 405 Query: 87 RVSVAQ------ILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ 140 V + + + +V+ + K ++ ++ +++ Sbjct: 406 YVLMYETLVGSGLNRCSQEMKSVISRRATRMKEVEKELGADGRGIKSIKEAEEGAKKIVI 465 Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200 +W E E + A + ++ + + + Sbjct: 466 PRYARINTLKWTVEEALKTLETEEWKILGTA-------SVEKFPELVANMKE-DEIYKDP 517 Query: 201 GGIRLKELPESIVSLPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 L +I + + + +QD ++ +P L V D CAAPG KT+ Sbjct: 518 HVENLLIFAPNIQNFHEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTS 577 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------ 302 ++ + KV A+D + R+ ++ LD + D Sbjct: 578 HAAAIMDNQGKVWAMDRAADRVATMKQLLDGSKVAIASAFCGDFLKTDVTDKKFSKVSNP 637 Query: 303 ------PKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFV 355 +VD PCS +G ++R ++ + + + K Q +L + Sbjct: 638 CFLSKILIFQVKFAIVDPPCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMILKHALKL- 696 Query: 356 KPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAMALSPEGW 412 PG V+S CS+ ++++E+VV +VL + L W ++ E Sbjct: 697 -PGLKRAVYSTCSIHEEENEQVVDEVLLDTYVRQNFVLKKDVLPEWTHRGLSTYEVGEHC 755 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +R P + +GFF R+ + Sbjct: 756 LRADPKVTL--------TNGFFVAVFERVKK 778 >gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral taxon 786 str. D14] gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral taxon 786 str. D14] Length = 149 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 11/146 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLL-----DLEYGDSAFRLLSQRD--QILVRAIV 53 MK + AR ++ + + + + + + LS D + +V Sbjct: 1 MKRRL-AREIAVQSMYQMEMNEVDANEAVTMLLTEAMEENEGEVELSDVDATRAFALELV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 N T ID++L+ L + R +Q+LR++ ++++ DV V+ A+E A Sbjct: 60 NGTWSRKDAIDSLLEDYLKGWQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119 Query: 112 KRDKENRHFAKLVNSILRRVSREKIE 137 K + K VN +L ++ ++ + Sbjct: 120 K-HFGSPESGKFVNGVLGKMIQDIDQ 144 >gi|89256455|ref|YP_513817.1| ribosomal RNA small subunit methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|167010374|ref|ZP_02275305.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. holarctica FSC200] gi|89144286|emb|CAJ79569.1| Ribosomal RNA small subunit methyltransferase [Francisella tularensis subsp. holarctica LVS] Length = 130 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 18/136 (13%) Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF-VKPGGIVVFS 364 F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + + G ++++ Sbjct: 8 KFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWNNNLTDNGYLLYT 67 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS+ +++++ +++ L + N+A ID+ ++ P + Sbjct: 68 TCSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYGYQLLPSQQDG-- 116 Query: 425 GVSSGMDGFFAVALRR 440 DGF+ L++ Sbjct: 117 ------DGFYYCLLKK 126 >gi|194900030|ref|XP_001979560.1| GG16141 [Drosophila erecta] gi|190651263|gb|EDV48518.1| GG16141 [Drosophila erecta] Length = 532 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 16/238 (6%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALD 270 S +Q+ + S+ +L +VLD+CAAPG KT L + + +++ Sbjct: 299 SHELVRSKRLILQNKATSLAAELLAPPMGATVLDMCAAPGMKTLHLCNVMKNKGCIYSVE 358 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328 + R E L ++ I DA D ++ D +LVD CS +G R Sbjct: 359 LDHVRYETLCEITEQAGCEIVKPILGDALDLTSERFADVEYILVDPSCSGSGMQNRMTVC 418 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 +D + + + Q K+L +S + + CSL K+++E+VVQ+ L+ +P Sbjct: 419 DERKDDNRLYRLQGVQIKMLSHAMSAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSYK 478 Query: 389 EL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 L L + + D + + PD S DG F +L Q Sbjct: 479 LLSCKKALRNKWHNVGDKDYPNIGKNCLYCLPD--------SDLTDGIFLALFEKLRQ 528 >gi|148906397|gb|ABR16353.1| unknown [Picea sitchensis] Length = 535 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 47/229 (20%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-----------KVTALDV 271 Q+A + +P ++ VLD+CAAPG KT QL+ V A D Sbjct: 159 ITRQEAVSMVPPLFLDVQSHHYVLDMCAAPGSKTFQLLEMIHKSDKLAFLPKGMVIANDA 218 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL------------------------- 306 +R L R+ + +A ++ + Sbjct: 219 DVQRCNLLIHQTKRMCSANLLVTNHEAQNFPSCRCKNNGMLTQTTNETEDKGSGRLEMNE 278 Query: 307 -----------FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 FD +L D PCS GTIR+ PD+ + Q ++ ++G++ + Sbjct: 279 DTHAESITELLFDRILCDVPCSGDGTIRKAPDIWKKWNAGLGNGVHRLQVQIAMRGVALL 338 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 K GG +V+S CS++ + E VV +VLR S +EL+ +++ + + Sbjct: 339 KVGGKLVYSTCSMNPVEDEAVVGEVLRQSGGSIELLDVSAEFPELKRRP 387 >gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC 7061] gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC 7061] Length = 131 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I + + +V L Sbjct: 1 MKRRT-AREKALQTLFQIDVSNIDPKEAITHALDEQESD-------PFFEELVFGVLEQK 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR+SV +++Y D+ ++ A+E AK + Sbjct: 53 DKLDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAK-LFGDD 111 Query: 119 HFAKLVNSILRRVSRE 134 +K VN +L + + Sbjct: 112 KASKFVNGVLSNIKND 127 >gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405] gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360] gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20] gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405] gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360] gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20] gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313] Length = 145 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +R ++ L+ + ++ S ++ L++ D+ + +V + I Sbjct: 3 RRASREIAMKLIYQLEIQKDSREEQINNTLEQY---DLNENDREYILDVVKGVFKNQEEI 59 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L R +LR+++ ++ + D+ ++ AVE AK + Sbjct: 60 DGTIEKFSKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAKNYSGEESGS 119 >gi|72386983|ref|XP_843916.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62176397|gb|AAX70506.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70800448|gb|AAZ10357.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 609 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 92/267 (34%), Gaps = 50/267 (18%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRL 276 Q+ + IPV L VLD+CAAPG KT+Q+ V A D++ RL Sbjct: 134 LTRQETVSMIPVVLLQVAPGNRVLDMCAAPGSKTSQILEAVISSNQDGVVVANDLNVARL 193 Query: 277 EKLRCNLDR-LHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 + L R + I+ P + FD VL D CS GT+R+ D+ Sbjct: 194 DVLLHQTARSPGAHPHLIVTNYDGTQFPLLPKEDKFDRVLCDVMCSGDGTLRKSMDMWPR 253 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 +T Q ++L +G+ K GGIVV+S CSL+ + E VV + L + L+ Sbjct: 254 WNTVHGADLHVTQVRVLTRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLSQAKGTFRLI 313 Query: 392 PLNSAY-----WKSIDMAMALSPEGW--IRITP--------------------------- 417 L+ + +R Sbjct: 314 DPAPFLKDFVTVPGQTDWFLLTKDLTQKLRTFEDAEAYNQSKQAHGFRYRKSMFSNAQVL 373 Query: 418 -----DMLEKIDGVSSGMDGFFAVALR 439 ++ GFF A+ Sbjct: 374 REQNIHFARRVVPHQQDTGGFFFAAME 400 >gi|170099357|ref|XP_001880897.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644422|gb|EDR08672.1| predicted protein [Laccaria bicolor S238N-H82] Length = 471 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 80/457 (17%), Positives = 156/457 (34%), Gaps = 55/457 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 ++ L + K+ S+ ++ L + ++ A+V TL+F + V+ Sbjct: 7 AAKTLDRLDAKQGSIKGVI---------ATLPENNRKRTAALVIETLKFKSVLSDVIRE- 56 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 +K + L V V +L D ++QA + R + I + Sbjct: 57 SKLMKEERKLTSINLALVLVHDLLLSR--GIQAGDGPIKQAVLRHKTR-LHGELQKIKIK 113 Query: 131 VSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWA 190 + L + + IP + + + E + S + + A Sbjct: 114 RGATSSQDLGLTSTTANIPRYARVNTSLWSIDEAIKYFVSQGYSF----INSFSSLNHLA 169 Query: 191 HKLNAVMLPTGGIRLKELPES-IVSLPGFAEGVWWVQDASASIPVQLFGT--LNNLSVLD 247 + L P + + P + G +QD ++ P + +N V+D Sbjct: 170 NSKGFQKDAHIPNLLAFSPNAALQDDPAYNSGKIILQDKASCFPAVVLSPPSEDNSVVID 229 Query: 248 LCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 AAPG KT+ L + + + A + ++R L+ + + + D P Sbjct: 230 ATAAPGNKTSHLSALMGNKGTLYAFERDRKRFSTLKMMIGKAACKNVTPVNTDFLTVDPS 289 Query: 305 KLFD----AVLVDAPCSSTGTIRRHPDVL-----WTRDTDDIV-KSACFQRKLLLQGISF 354 +L+D CS +G + R +L + + + K A FQ ++ + F Sbjct: 290 DPKYLPVTHILLDPSCSGSGIVNRLDHLLEGEPESEKSQHERLDKLAAFQLLMIKHAMRF 349 Query: 355 --VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV---------ELVPLNSAYWKSIDM 403 VK +V+S CS+ ++E VV+ L S E++P + +M Sbjct: 350 PNVKK---IVYSTCSIHASENEHVVRDALSSDEAKAGSFSIASRNEVLPDWPRRGFAEEM 406 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + +R P +GFF R Sbjct: 407 NSTDAASALVRCLPG--------EDATNGFFVSCFVR 435 >gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1] gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1] Length = 149 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 9/131 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEY-----GDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ D L+ D+ +V +R Sbjct: 11 ARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEGETLASADEAFFADLVRGVVREQK 70 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA + L L R +++ +LR ++++ DV +D VE K E Sbjct: 71 PIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELTKSFFEGP 130 Query: 119 HFAKLVNSILR 129 VN L Sbjct: 131 E-PGFVNGALD 140 >gi|157867632|ref|XP_001682370.1| hypothetical protein [Leishmania major strain Friedlin] gi|68125823|emb|CAJ03860.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 1214 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +D VLVDAPCS G + R ++ Q LL + + K GG +V++ C Sbjct: 569 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 628 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413 +L+ ++E VV VLR+ VEL+P + ++ G + Sbjct: 629 TLNPLENEAVVAAVLRACGGAVELIPPPRPLPRRTELQTEEDGGGSVPPLRLTAGLRSWD 688 Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428 R+ PDM ++ + Sbjct: 689 VPSGAGGFLCSATEAYAQGESAARLPPDMFAPASAGADGDRTDISGALQRCCRRVMPHLN 748 Query: 429 GM-DGFFAVALRRLI 442 G DGFF L + Sbjct: 749 GNADGFFVAVLEKRA 763 >gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574] gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574] Length = 144 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L + +I L + ++ R +V TL + I Sbjct: 3 RRQARETALQALFQIDVGKIEPEFALKNTAEE---FGAGSQELEFARQLVTGTLEHINEI 59 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ V L R + ++R+++ ++++ D+ ++ AVE AK Sbjct: 60 DEIISRVSKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAKAF-GGADSG 118 Query: 122 KLVNSILRR 130 K VN IL + Sbjct: 119 KFVNGILGK 127 >gi|328767841|gb|EGF77889.1| hypothetical protein BATDEDRAFT_13651 [Batrachochytrium dendrobatidis JAM81] Length = 454 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 46/245 (18%) Query: 244 SVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 +L+ G ++ V A D + R + L RL + D ++ Sbjct: 142 QLLEAIHNVGENYDSETLADGLVVANDSNYERSQMLVHQAKRLQSPCLLVTNHDGQEFPR 201 Query: 304 KK-------------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 FD +L D PCS GT+R++ + T + Q+++L + Sbjct: 202 VFLTDRHSTEGATVLQFDRILCDVPCSGDGTMRKNKTIWRTWTHANGNGLHRLQKQILQR 261 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWK-----SIDM 403 G +K GG +V+S C+ + ++E L + + LV +++ + + Sbjct: 262 GCELLKIGGRIVYSTCTFNPIENEATSIFCLTVFGNTGALRLVDVSADLPQLTRRSGLTT 321 Query: 404 AMALSPEGWI-----------------RITP---------DMLEKIDGVSSGMDGFFAVA 437 + G + P + ++ GFF Sbjct: 322 WKVMDKSGAMFDTFDSENESHRTTLAPTFFPPKNVDELGLNNCMRVYPYMQNGGGFFVAV 381 Query: 438 LRRLI 442 + ++ Sbjct: 382 IEKVA 386 >gi|71747710|ref|XP_822910.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70832578|gb|EAN78082.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 740 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 125/434 (28%), Gaps = 109/434 (25%) Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII---PEWFKERLENFYGKERVLA 167 + + + VN+ + E L + + + EW E Sbjct: 26 VRTTYDEKGNWMAVNNPDKLRQTECPALDRYYRDLQRLCTPQEWGDEMALFRQPLPTTFW 85 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGV 222 I+D I + +T + + R+K L F Sbjct: 86 INDTDPLAPEISRYFESLPDTVVEAIPWYPIRGMAWRIKAGKTEFRRPEMKELRSFLIRH 145 Query: 223 -----WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA-------------------- 257 Q+ + +P L LD+CA+PG KTA Sbjct: 146 TAIGTVSRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVSLGRHKVVPHDSDASP 205 Query: 258 --QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--------------------------Y 289 S V A D+ +R L + R+ L Sbjct: 206 FPFDYDSEGLVVANDIDTKRANMLVHQVKRMRLLFPFALFTNHDAQFFPNMVLTPGEAQP 265 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D + FD +L D CS GTIR+ P +L + + Q ++ L Sbjct: 266 HTCGQQTTGDDGATELRFDKILCDVVCSGDGTIRKAPHILKMWSPREAISLQKVQIQIAL 325 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW----------- 398 + ++ GG +V+S CS++ ++E VV +++ + ++L+ +S Sbjct: 326 RACHLLRVGGRLVYSTCSMNPIENEAVVAQIIHRTKGAMKLIDCSSLLPGLRFTPGLQKW 385 Query: 399 ------------KSIDMAMALSPEG-----------------WIRITPDMLEKIDGVSSG 429 + AL P G +R+ P Sbjct: 386 VVTNSKGNVVEAPCQEAHEALFPPGTPGAYSSDAVDAMDLRLCLRLLPSHCNGGA----- 440 Query: 430 MDGFFAVALRRLIQ 443 FF L ++ + Sbjct: 441 ---FFIAVLSKVSE 451 >gi|312888751|ref|ZP_07748315.1| Fmu (Sun) domain protein [Mucilaginibacter paludis DSM 18603] gi|311298751|gb|EFQ75856.1| Fmu (Sun) domain protein [Mucilaginibacter paludis DSM 18603] Length = 389 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 66/387 (17%), Positives = 127/387 (32%), Gaps = 35/387 (9%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS 81 L+ L Y + + D+ + ++ R L LI++ Sbjct: 20 DTPLSKFLPGFYRQNKQ--MGSSDRRIASRLIYNYFR--------LGQALINTSTED--- 66 Query: 82 LQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQR 141 R+ VA+ L V+ + K +A V L Sbjct: 67 -----RLFVAEFL-----CNTQVNSFLTHFK-----PDWALCVGFSLDEKLAMVKISYPD 111 Query: 142 IAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201 + P W + + + + + + I + ++ K + V G Sbjct: 112 FKLEDVFP-WTDQLSPSIDKQAFLKSFFYQPDLYIRILKGFEGQVKATLTKADIVFKEEG 170 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQL 259 L + + + + +QD S+ Q F D CAA GGK Sbjct: 171 NQCLALPNGTRLDTLFPNQHWFEIQDFSSQQTAQFFKPNKWEHWWDACAASGGKSLLLHE 230 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----KKLFDAVLVDAP 315 + K+ D+ + L L + L +D FD +++DAP Sbjct: 231 LQPDLKLVVSDIRESILANLDERFQQAGLRKYQKKLVDLTKNVDPELHDYEFDGIILDAP 290 Query: 316 CSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 CS +GT R P+++ I Q+ ++ + ++KPG +++ CS K ++E+ Sbjct: 291 CSGSGTWSRTPEMIAQFQDFKIQSFKNLQQSIVRNVVKYLKPGKPLIYITCSAFKAENED 350 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSID 402 +V + +E + Y + D Sbjct: 351 MVDFLSSEFGFKIEEQQILKGYGRKAD 377 >gi|68066142|ref|XP_675055.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56494015|emb|CAI05799.1| conserved hypothetical protein [Plasmodium berghei] Length = 714 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 58/245 (23%) Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------- 302 K V A D + +R L L +H + +A + Sbjct: 296 KKLISNNNPTGVVVANDANFKRCCMLFHRLKNIHSNCLIVTNNNAVIFPYLYLKNKLDNS 355 Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 K FD+VL D PCS GT+R+ ++ + + Q +L + I VK GG V Sbjct: 356 FEKIYFDSVLCDVPCSGDGTLRKDRNIWINWNPLNAYNLFQLQVNILKRSIELVKEGGYV 415 Query: 362 VFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALS----------- 408 ++S CSL+ ++E V+ +V L ++ ++L+ + K ++ L+ Sbjct: 416 IYSTCSLNPIENEAVICEVFNLLNNGESLKLINFENELVKKLNYREGLTEWKLLIDDKWF 475 Query: 409 --------------PEGWIRIT---------PD----------MLEKIDGVSSGMDGFFA 435 PE + +I P+ +++ GFF Sbjct: 476 NTYDEFIDYLKSIQPEKFKKIYEKIKNGMFTPNKEFMEKINLKYVKRFFPHHYNAGGFFI 535 Query: 436 VALRR 440 + + Sbjct: 536 ALIEK 540 >gi|156545332|ref|XP_001605840.1| PREDICTED: similar to williams-beuren syndrome critical region protein [Nasonia vitripennis] Length = 890 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 66/439 (15%), Positives = 152/439 (34%), Gaps = 36/439 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ L + ++ I L LD F+ + + +T R ++ ++ Sbjct: 33 KLTAKALMLLDKQGIPLNETLDER-RKLVFKKM--------YNLAELTQRHDEELNFLIA 83 Query: 69 FV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + ++ +++ + ++L+ + + VE K +++ A + Sbjct: 84 KLEILKKKSALNPYEAKVM---ITELLWGRQFLMSG-NQKVEAIKFYEDDLREAYIQARD 139 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 + K L I+ + ++ L N + KE + Y+ + ++ Sbjct: 140 ICNPIENKNPNLPVYIRINTLTISIEDTL-NAFYKEGWNLLPRCNSYSEYLSV-----LQ 193 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 + + + PG+ +G + QD + + L + V D Sbjct: 194 RLGERDFIRDYHISELLAFPPGTLFYNHPGYIKGKFLYQDKGSCLSSFLLNPKPDSVVFD 253 Query: 248 LCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK 304 CAAPG KT ++ + + A D+ R++K+ L L I++ D Sbjct: 254 ACAAPGIKTNHLANIMNNTGLIYANDIHPLRVKKMIDLLG-LTETNARILKEDFISMDYS 312 Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFS 364 D + SST + + +++ +L + VV++ Sbjct: 313 AYADVKYILVEPSSTYSGIFYAVGA-RMKKVGLMRRQFVSNTMLRSALQQFPNVKRVVYT 371 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNS---AYWKSIDMAMALSPEGWIRITPDMLE 421 CSL ++ EE++++V++ L+ + W+S+ + +RI P+ Sbjct: 372 ICSLYSEEGEEIIEQVMKEVGDSFTLLDIKKMLWNEWESMSQPGNICGGKCLRIVPEYDL 431 Query: 422 KIDGVSSGMDGFFAVALRR 440 G+F R Sbjct: 432 CQ--------GYFVAVFER 442 >gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043] gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043] Length = 166 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 12/140 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ----------RDQILVRA 51 +S AR ++ L S+T + A L D L Sbjct: 13 QSRRAARELAVQGLYQWQMTGKSITAVESEFRAQIADEDLEDHENWHKVMGIADLALFHE 72 Query: 52 IVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110 +++ ID + +L L +LR+ ++ Y L+V AV++ +E Sbjct: 73 LLHNVAADREAIDKTIAPLLDRRLEDLDRIELAILRLGAYELKYRLEVPYRAVINEGIEL 132 Query: 111 AKRDKENRHFAKLVNSILRR 130 AK K VN IL + Sbjct: 133 AKAFGATDG-HKYVNGILDK 151 >gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1] gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1] Length = 143 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + +L + + L+ + ++ R +V TL + I Sbjct: 3 RRQARETALQVLFQIDLGKTEPDLALNNTAEE---FGAGPQEIEFARQLVMGTLEHIEEI 59 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 DA++ V L R + ++R+++ ++ Y D+ V+ A+E +K Sbjct: 60 DAMIGKVSKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSK-IFGTPDSV 118 Query: 122 KLVNSILRR 130 + +N IL + Sbjct: 119 RFINGILGK 127 >gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus thermodenitrificans NG80-2] gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans NG80-2] Length = 130 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 10/123 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I + G +R +V + Sbjct: 1 MK-RHEAREKALQALFQIDVGHIPPDEAIGNVTGSGEVD-------PFLRQLVFDVIEHR 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +L L L R + +LR++ ++ Y DV +D AVE AK+ + + Sbjct: 53 AEIDELLRSNLEKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELAKKFGDWK 112 Query: 119 HFA 121 + Sbjct: 113 SGS 115 >gi|63093895|dbj|BAD98176.1| hypothetical protein [Drosophila parabipectinata] Length = 421 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 53/245 (21%), Positives = 91/245 (37%), Gaps = 16/245 (6%) Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLI 260 + S + + +Q+ + +L + +VLD+CAAPG KT + Sbjct: 178 FHHKWSSYWSSHEFVKQKKFILQNKGTCLAAELLAPPSGSTVLDMCAAPGMKTLHLCNFM 237 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSS 318 + ++ A++ S R L I DA + + +LVD CS Sbjct: 238 KNKGRIYAVEQSTERYRVLCNITSEAGCDIVTPILGDALRMNAENCPEVEYILVDPSCSG 297 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 G R +D + K A Q K+L ++ + + CSL K+++EEVV+ Sbjct: 298 NGMQSRMNVCDEEKDDQRLFKLAGLQVKILSHAMTAFPNVKRIAYCTCSLYKEENEEVVK 357 Query: 379 KVLRSSPIPVEL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 + L+ +P L L + + D A + + PD S DG F Sbjct: 358 RCLQVNPSFKLLSCKKALRNKWHNVGDTEYAKIGKNVLYCLPD--------SDLTDGIFL 409 Query: 436 VALRR 440 + Sbjct: 410 ALFEK 414 >gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus SAFR-032] gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus SAFR-032] Length = 131 Score = 94.2 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 11/136 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I + + +V L Sbjct: 1 MKRRT-AREKALQTLFQIDVSNIDPKEAITHALDEQESD-------PFFEELVFGVLEQK 52 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R + +LR+SV +++Y D+ ++ A+E AK + Sbjct: 53 DKLDDMISQHLVNWKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELAK-LFGDD 111 Query: 119 HFAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 112 KAPKFVNGVLSNIKND 127 >gi|302819862|ref|XP_002991600.1| hypothetical protein SELMODRAFT_133737 [Selaginella moellendorffii] gi|300140633|gb|EFJ07354.1| hypothetical protein SELMODRAFT_133737 [Selaginella moellendorffii] Length = 551 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 8/149 (5%) Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 D P FD VL+DAPCS+ G R + + + A +QR+L + + VK Sbjct: 392 DMIKRFPPNSFDRVLLDAPCSALGL--RPRLFAAEETLESLGRHAIYQRRLFDRAVELVK 449 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 GG +V+S C+++ ++E +V+ L V + + + ++ R Sbjct: 450 AGGTLVYSTCTINPGENEALVRYALDKYKFLVLVDQVPKIGGPGLVGGTSVYDGRGYREW 509 Query: 417 ----PDMLEKIDGVSSGMD--GFFAVALR 439 L + SS +D GFF + Sbjct: 510 LKEGEQYLVQRFDPSSPVDTIGFFIAKFQ 538 >gi|261332735|emb|CBH15730.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 740 Score = 93.8 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 125/434 (28%), Gaps = 109/434 (25%) Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII---PEWFKERLENFYGKERVLA 167 + + + VN+ + E L + + + EW E Sbjct: 26 VRTTYDEKGNWMAVNNPDKLRQTECPALDRYYRDLQRLCTPQEWGDEMALFRQPLPTTFW 85 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-----LPGFAEGV 222 I+D I + +T + + R+K L F Sbjct: 86 INDTDPLAPEISRYFESLPDTVVEAIPWYPIRGMAWRIKAGKTEFRRPEMKELRSFLIRH 145 Query: 223 -----WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA-------------------- 257 Q+ + +P L LD+CA+PG KTA Sbjct: 146 TAIGTVSRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVSLGRHKVIPHDSDASP 205 Query: 258 --QLIVSGAKVTALDVSKRRLEKLRCNLDRLHL--------------------------Y 289 S V A D+ +R L + R+ L Sbjct: 206 FPFDYDSEGLVVANDIDTKRANMLVHQVKRMRLLFPFALFTNHDAQFFPNMVLTPGEAQP 265 Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + D + FD +L D CS GTIR+ P +L + + Q ++ L Sbjct: 266 HTCGQQTTGDDGATELRFDKILCDVVCSGDGTIRKAPHILKMWSPREAISLQKVQIQIAL 325 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW----------- 398 + ++ GG +V+S CS++ ++E VV +++ + ++L+ +S Sbjct: 326 RACHLLRVGGRLVYSTCSMNPIENEAVVAQIIHRTKGAMKLIDCSSLLPGLRFTPGLQKW 385 Query: 399 ------------KSIDMAMALSPEG-----------------WIRITPDMLEKIDGVSSG 429 + AL P G +R+ P Sbjct: 386 VVTNSKGNVVEAPCQEAHEALFPPGTPGAYSSDAVDAMDLRLCLRLLPSHCNGGA----- 440 Query: 430 MDGFFAVALRRLIQ 443 FF L ++ + Sbjct: 441 ---FFIAVLSKVSE 451 >gi|146417055|ref|XP_001484497.1| hypothetical protein PGUG_03877 [Meyerozyma guilliermondii ATCC 6260] Length = 514 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 83/449 (18%), Positives = 158/449 (35%), Gaps = 57/449 (12%) Query: 29 LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRV 88 L+ + ++ S + + A+V T+R+ P ++ V+ I + K Sbjct: 86 LNTQIFNNKHLSSSPK---HIYALVYSTMRYKPYLEEVIKKSKIRQSSKLKKLKVS---- 138 Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL-----LQRIA 143 + ++ + + R + + +++L +R + EL ++ Sbjct: 139 ---------DSLLLLLVHDLLFSPRGRIELGKHPIKDAVLENKTRLQAELIKLKLRYKVK 189 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYID----LTVKFDIETWAHKLNAVMLP 199 ++ +P E+ E R+ I + + D L + A Sbjct: 190 TLADLPN-TVEQDETPIRWIRINTIVASEEEVMREDFFEKLKFVDSTDEIASGKIYRDTI 248 Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKT 256 + E I + + G +QD ++ P Q+ + V+D CAAPG KT Sbjct: 249 VTNLYGIHPSEKITNTEAYKNGKIIIQDRASCFPAQILNGDPENQHEVVIDACAAPGNKT 308 Query: 257 AQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCP--KKLFD 308 + V A + +R++ L+ + I D P Sbjct: 309 THLASFLPKNGVVHAFERDDKRVKTLKMMTSKALGPNKDLIQITHADFMTIIPSDFPKVT 368 Query: 309 AVLVDAPCSSTGTIRRH------PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-V 361 ++VD CS +G R T DT+ + K A FQ K++ + F PG + Sbjct: 369 GIVVDPSCSGSGIFGRALEDAQLEQDRETIDTERLTKLASFQFKIVKHTMKF--PGARKI 426 Query: 362 VFSNCSLDKQDSEEVVQKVLRS----------SPIPVELVPLNSAYWKSIDMAMALSPEG 411 V+S CS+ ++E VV +L +P L + WK ++M+ P+ Sbjct: 427 VYSTCSIHPHENERVVMDLLADPEVKEQGWKLAPKEQVLPNWHRRGWKDEFVSMSRDPQV 486 Query: 412 WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 ++ + + G GFFA R Sbjct: 487 CEQLAGGCVRAV-PKEDGGIGFFAACFIR 514 >gi|115496370|ref|NP_001069469.1| putative methyltransferase NSUN3 [Bos taurus] gi|122143235|sp|Q0P5D8|NSUN3_BOVIN RecName: Full=Putative methyltransferase NSUN3; AltName: Full=NOL1/NOP2/Sun domain family member 3 gi|112362104|gb|AAI20182.1| NOL1/NOP2/Sun domain family, member 3 [Bos taurus] gi|296491582|gb|DAA33625.1| putative methyltransferase NSUN3 [Bos taurus] Length = 338 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 22/291 (7%) Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220 +L ++ + L + L + +P Sbjct: 51 WQYAVLLNRFNYPFELEKDLHLKGYHSLLQGSLPYYPKSMKCYLSRTPHRMPSERHQTGN 110 Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLE 277 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 111 LKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSLALLQCAYPGYLHCNEYDSLRLR 170 Query: 278 KLRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330 LR + + + + E+D + + FD VLVDAPCS+ + Sbjct: 171 WLRQTLESFIPQPLVNVIKVSELDGREMGDAQPETFDKVLVDAPCSNDRSWLFSSDSQKA 230 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 Q +LL I ++PGG++V+S C+L K ++++V+ +VL S + + Sbjct: 231 ACRISQRRNLPLLQMELLRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLNSYSNIMPV 290 Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 291 DIKEMARTCSRDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 334 >gi|291400841|ref|XP_002716799.1| PREDICTED: NOP2/Sun domain family, member 3 [Oryctolagus cuniculus] Length = 339 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 111 KRYYLLNAASLLPVLALEVQDGEKVLDLCAAPGGKSVALLQCAYPGYLHCNEYDSLRLRW 170 Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 L+ + + + + E+D D + FD VLVDAPCS+ + Sbjct: 171 LKQTLESFIPQPLINTIKVSELDGRDMGESQPESFDKVLVDAPCSNDRSWLFSSDSQKAA 230 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGG++V+S C+L K ++++V+ ++L S + + Sbjct: 231 CMISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVISEILNSHSNIMPVD 290 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 S D A + + + + PD + + L++ Sbjct: 291 IKGITRTCSQDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|302894281|ref|XP_003046021.1| hypothetical protein NECHADRAFT_76439 [Nectria haematococca mpVI 77-13-4] gi|256726948|gb|EEU40308.1| hypothetical protein NECHADRAFT_76439 [Nectria haematococca mpVI 77-13-4] Length = 846 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 77/235 (32%), Gaps = 56/235 (23%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-------------LFDAVL 311 + A D +R L L RL + DA + + FD +L Sbjct: 240 MLIANDSDYKRGHMLVHQLKRLSSPNLLVTNHDATQFPSIRLPPREGNSKPTYLKFDRIL 299 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R++ ++ + Q ++L++ + +K GG VVFS CS++ Sbjct: 300 ADVPCSGDGTLRKNANIWKDWQPGSALGLHQTQIRILVRALQLLKVGGRVVFSTCSMNPV 359 Query: 372 DSEEVVQKVLRSSP-IPVELVPLNSAYW---KSIDMAMALSPEGWIRIT----------- 416 ++E VV + VE+V + ++ M + RI Sbjct: 360 ENESVVVSAIERCGAENVEIVDCSDQLPNLKRNPGMKDWKIMDKSARIWSSWKEVEDFAK 419 Query: 417 --PD--------------------------MLEKIDGVSSGMDGFFAVALRRLIQ 443 PD ++ GFF L + + Sbjct: 420 ESPDNVIPGRVVETMFPRVEGSDCADLPLERCMRVYPHMQDTGGFFITVLEKKSE 474 >gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans DMS010] gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans DMS010] Length = 150 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 55/143 (38%), Gaps = 7/143 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + L+ + A + D+ ++ T+++ Sbjct: 6 PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYA----DKIDRKYFTTLIEGTIKYQQ 61 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 IDA L + L +LR++V + ++L ++ V++ AVE AK + Sbjct: 62 AIDAELSEAVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELAKSFGGEQG- 120 Query: 121 AKLVNSILRRVSREKIELLQRIA 143 K VN +L ++ + A Sbjct: 121 HKYVNGVLDKMGARLRPHEYQAA 143 >gi|209877447|ref|XP_002140165.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66] gi|209555771|gb|EEA05816.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66] Length = 712 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 24/199 (12%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------LIVSGAKVTAL 269 G + Q+A + +PV + ++LD+C+APG KT+Q + A Sbjct: 119 GCIFRQEAVSMLPVLFLDISKHHAILDMCSAPGSKTSQILEILKSDTDDKEFVSGFLVAN 178 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP----------KKLFDAVLVDAPCSST 319 D+ RR L ++ L+ + + A ++ K LFD +L D PCSS Sbjct: 179 DLDTRRAHMLIHHMRHLNSPSFVVTTHSADNFPELYIDKDSKLTKFLFDRILCDVPCSSD 238 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 GT+R++P++ +T+ QRK+LL+ +S +KP G++V+S CS + ++E V+ Sbjct: 239 GTLRKNPNLFSKWNTNFGCSLHRLQRKILLRALSLIKPKGLIVYSTCSFNPIENEAVIAS 298 Query: 380 V---LRSSPIPVELVPLNS 395 V L+ I VE++ + Sbjct: 299 VITSLKKQGITVEIIDPKN 317 >gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp. ORS278] gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein B) [Bradyrhizobium sp. ORS278] Length = 168 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 9/143 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + +L + + R IV+ +R Sbjct: 24 AARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEGEQYLPAEAAFFRDIVSGVVRDQ 83 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +ID VLD L L R + L+ +LR ++ DV VV V+ A Sbjct: 84 TKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFV-E 142 Query: 118 RHFAKLVNSILRRVSREKIELLQ 140 R +VN++L +++R+ Sbjct: 143 RDETGMVNAVLEQLARQYRGDEM 165 >gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 11379] gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces roseosporus NRRL 15998] Length = 143 Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L S +V ++ Sbjct: 1 MAARNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVGEFTMELVEGYAQYA 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + + R + +LR+ +++++D D V+D AV+ AK Sbjct: 61 DRIDDLIVTYAVDWEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQLAKEF-STD 119 Query: 119 HFAKLVNSILRRVSR 133 VN +L R Sbjct: 120 DSPSFVNGLLARFKD 134 >gi|282897600|ref|ZP_06305600.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Raphidiopsis brookii D9] gi|281197523|gb|EFA72419.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Raphidiopsis brookii D9] Length = 321 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 93/277 (33%), Gaps = 17/277 (6%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP--E 210 RL + +E + P + + + L E Sbjct: 12 AHRLFDNPDEEAKFIAALVHPQPFSPSILWCQNPPETRPFTTETPTSWQPKFIDRLQVGE 71 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKV 266 G ++ D S+ + VLD+CAAPGGK+ + Sbjct: 72 RPGQHALHQAGAFYCLDFSSIFAASVLLTIEQPTPLVLDVCAAPGGKSIFAWKALKPDLI 131 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR 324 + +V +RL L NL R + ++ D V+VDAPCS + + Sbjct: 132 VSNEVIGKRLGMLISNLKRCQIQPGYVLNRDTSILAQMLKQSMSLVIVDAPCSGQSLLAK 191 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 I K+A Q++++ V P G +V+ C+ +++E+V L Sbjct: 192 REKAPGCFHQTVINKNANRQKRIIANSAGIVAPQGYLVYMTCTYSPEENEQVCTWFLERF 251 Query: 385 PIP--VELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 P VE+ PL++ L+ R+ P Sbjct: 252 PQFKPVEVSPLST-------YRSNLTTIPCYRMFPQD 281 >gi|301119497|ref|XP_002907476.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein [Phytophthora infestans T30-4] gi|262105988|gb|EEY64040.1| tRNA (cytosine-5-)-methyltransferase NSUN2-like protein [Phytophthora infestans T30-4] Length = 748 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 28/162 (17%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD V+ APCS G IR+ P+ T + + Q L +S ++ GG +++S Sbjct: 348 FDRVICCAPCSGDGLIRKLPEKWRTWSPEQALVHHPSQLGLAEHAVSLLRTGGALLYSTR 407 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNS-----------AYWKSIDMAMA--LSPEGWI 413 SL+ ++E VV ++LR S +ELV + + W +D+A S + Sbjct: 408 SLNPIENEAVVAELLRRSNGALELVETDDILEGLERSHGLSQWDVLDLASWDDASEDQRH 467 Query: 414 RITPDMLE---------------KIDGVSSGMDGFFAVALRR 440 R+ P M ++ + G F +R+ Sbjct: 468 RLRPSMWPPSNEECDEMHLDRCVRLLPHQNDTHGLFLAVIRK 509 >gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881] gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881] Length = 149 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L +++ + + F + D+ +++ L + Sbjct: 7 SARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKV---DREYFHDLLHGVLGQVK 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D +L L + + +LR+ ++ DV V++ +E AK F Sbjct: 64 TLDELLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSF 123 Query: 121 A 121 Sbjct: 124 K 124 >gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2] gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2] Length = 161 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R V+ L + +D+ S L D L + IVN + Sbjct: 24 RTQTRRVALQALYQWQVNH---SETVDIIKQFSEEGRLVDTDVALFQEIVNEVANHAADL 80 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122 D + L ++ R + ++R+ V ++ L++ V++ +VE AKR K Sbjct: 81 DELYAPFLDRAVARIDPVEKNIMRMGVFELQNKLEIPYRVVINESVELAKRF-GAEDSHK 139 Query: 123 LVNSILRR 130 +N IL + Sbjct: 140 YINGILDK 147 >gi|297680257|ref|XP_002817918.1| PREDICTED: putative methyltransferase NSUN5-like, partial [Pongo abelii] Length = 377 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 133/349 (38%), Gaps = 20/349 (5%) Query: 49 VRAIVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 + A+V T R+ +DAV+ L+ + + + L ++L V ++L Sbjct: 36 LYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVL---VYELLLGKGFRGGGGRWK 92 Query: 108 VEQAKRDKENRH-FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + + A+L + + +E+ R S +P + + + V Sbjct: 93 ALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVD 152 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQ 226 S + D K + + + + P + G +Q Sbjct: 153 YFKRQGFSYQG-RASSLDDFRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211 Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNL 283 D ++ +P L V+D CAAPG KT+ L + K+ A D+ +RL + L Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271 Query: 284 DRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDI 337 R + ++ E D P +L+D CS +G R T + Sbjct: 272 ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPARL 331 Query: 338 VKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ + Sbjct: 332 HALAGFQQRALCHALTFPSLQ---RLVYSTCSLCREENEDVVRDALQQN 377 >gi|255088551|ref|XP_002506198.1| predicted protein [Micromonas sp. RCC299] gi|226521469|gb|ACO67456.1| predicted protein [Micromonas sp. RCC299] Length = 771 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 16/130 (12%) Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 +R T D + QR++L + +P GG +V++ CSL ++++E V Sbjct: 637 SRGTRDDLSLPEVQRRILAKAAGLCRPNGGALVYATCSLLREENECVRAWFDTRFGDDFV 696 Query: 390 LVPLNSAYWKSIDMAMALSPEGWI---------------RITPDMLEKIDGVSSGMDGFF 434 VP + + + D EG + + P + G DGF+ Sbjct: 697 PVPFEAHWPLAPDDVTGDVDEGDVARDDVDEDGNAMDDGTVAPSHGFALRPDLHGCDGFY 756 Query: 435 AVALRRLIQP 444 R +P Sbjct: 757 VARWIRKPEP 766 >gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes HCC23] gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes 10403S] gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes HCC23] gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99] Length = 128 Score = 93.4 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLR+SV +I YL DV + ++ ++E AK + Sbjct: 52 AEIDAIIEPNLDNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|322828741|gb|EFZ32426.1| hypothetical protein TCSYLVIO_1232 [Trypanosoma cruzi] Length = 949 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 95/283 (33%), Gaps = 67/283 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------K 265 E + Q S+ +PV L +VLDLCA+PG KT + Sbjct: 294 NERLISFQSTSSMLPVLLLDPRPGEAVLDLCASPGSKTTLIHEYMFGISSSSKSLLATGC 353 Query: 266 VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTG 320 + A D R L L + A I+ F P +D VLVDAPCS G Sbjct: 354 IVANDAVFSRRRTLSQRLQSVSPSIAVTQIQGQTFPAQPIASGGVRYDKVLVDAPCSGEG 413 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + R ++ Q LL + GG VV+S C+L+ ++E V+ V Sbjct: 414 RMHRDVMSWRMWHPLKAMEFFTTQVSLLRHAVELCAAGGCVVYSTCTLNPLENEAVISTV 473 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------------P 409 L + + P + LS P Sbjct: 474 LADGEVELIRPPHFMTADSGWHFSRGLSHWLVPSRAGGFLHTFAEAEAKGEETAVELFPP 533 Query: 410 EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG +R+ P +SG +GFF ALR++ Sbjct: 534 EGNGEIQKALESCCLRVLPHR-------NSGAEGFFLAALRKV 569 >gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp. BTAi1] gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1] Length = 169 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 9/143 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + +L + + R IV+ +R Sbjct: 25 AARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEVEGEQYLPAEAAFFRDIVSGVVRDQ 84 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +ID VLD L L R + L+ +LR ++ DV VV V+ A Sbjct: 85 TKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEYVDIAHAFV-E 143 Query: 118 RHFAKLVNSILRRVSREKIELLQ 140 R +VN++L +++R+ Sbjct: 144 RDETGMVNAVLEQLARQYRADEM 166 >gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila L48] gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance protein B) [Pseudomonas entomophila L48] Length = 166 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L + SL + D+ F S D R I++ Sbjct: 26 AKRREARKLATQALYQWHMAKHSLNEVEAQFRVDNDF---SDVDGAYFREILHGVPAKKV 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L + L +LR+S + ++ DV V++ VE AK Sbjct: 83 EIDEALKPCLDTPLEELDPVELSVLRLSAWEFMMRADVPYRVVINEGVELAKVFGATDGH 142 Query: 121 A 121 Sbjct: 143 K 143 >gi|261327025|emb|CBH10000.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 655 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 92/267 (34%), Gaps = 50/267 (18%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRL 276 Q+ + IPV L VLD+CAAPG KT+Q+ V A D++ RL Sbjct: 180 LTRQETVSMIPVVLLQVAPGNRVLDMCAAPGSKTSQILEAVISSNQDGVVVANDLNVARL 239 Query: 277 EKLRCNLDR-LHLYAEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 + L R + I+ P + FD VL D CS GT+R+ D+ Sbjct: 240 DVLLHQTARSPGAHPHLIVTNYDGTQFPLLPKEDKFDRVLCDVMCSGDGTLRKSMDMWPR 299 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 +T Q ++L +G+ K GGIVV+S CSL+ + E VV + L + L+ Sbjct: 300 WNTVHGADLHVTQVRVLTRGMMLCKKGGIVVYSTCSLNPVEDEAVVSECLSQAKGTFRLI 359 Query: 392 PLNSAY-----WKSIDMAMALSPEGW--IRITP--------------------------- 417 L+ + +R Sbjct: 360 DPAPFLKDFVTVPGQTDWFLLTKDLTQKLRTFEDAEAYNQSKQAHGFRYRKSMFSNAQVL 419 Query: 418 -----DMLEKIDGVSSGMDGFFAVALR 439 ++ GFF A+ Sbjct: 420 REQNIHFARRVVPHQQDTGGFFFAAME 446 >gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha carboxidovorans OM5] gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha carboxidovorans OM5] Length = 156 Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 9/144 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + + R IV+ +R Sbjct: 14 AARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDEYLPAEAAFFRDIVSGVVRDQ 73 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 RID +LD L L R + L+ LR ++ + DV V+ V+ A Sbjct: 74 GRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVDVAHAFF-E 132 Query: 118 RHFAKLVNSILRRVSREKIELLQR 141 A +VN++L +++R+ Sbjct: 133 ADEAGMVNAVLDQIARQTRAGEFH 156 >gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp. 2_A_57_CT2] gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp. 2_A_57_CT2] Length = 129 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 12/133 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + + ++ + +V+ L+ Sbjct: 1 MKRRT-AREKALQALFQIDVSQAEPETAIEHVLEGEKSDE-------YLNKLVSGVLQHK 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKEN 117 ID + L +L R + LLR+SV ++LYL +V V+D A+E AK + Sbjct: 53 ETIDGEIKGFLEKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIEIAK-LYGD 111 Query: 118 RHFAKLVNSILRR 130 +K +N +L + Sbjct: 112 DQSSKFINGVLSK 124 >gi|261335640|emb|CBH18634.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 25/241 (10%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267 ++ F + D + ++ V+L G VLDLCA GGK +Q + + A +T Sbjct: 88 PPPAIDEFNVKAHYPLDYTTALAVELLGVQQFDLVLDLCAGVGGKSIAISQFLSNSASLT 147 Query: 268 ALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT--- 321 A + R +LR N+ + + + + VLVDAPC+ Sbjct: 148 ANEQRGDRCARLRRNIKEYVPSNYVPVTVTQRKPETWHDPSTYHRVLVDAPCTGERQLLQ 207 Query: 322 -IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 +H V+ + QR LLL+ I +PGG +V++ CS+ +++EVV++ Sbjct: 208 HSGKHAVSPLHWSLQACVELSHTQRGLLLRSIETCRPGGRIVYTTCSISPLENDEVVREA 267 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ + VEL+ + + + PD + + + Sbjct: 268 LKRTRCQVELMHPPVPIGEKTEFGHI--------VLPDRDNGRGPA-------YYCVIHK 312 Query: 441 L 441 + Sbjct: 313 I 313 >gi|74026108|ref|XP_829620.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70835006|gb|EAN80508.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 335 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 25/241 (10%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVT 267 ++ F + D + ++ V+L G VLDLCA GGK +Q + + A +T Sbjct: 88 PPPAIDEFNVKAHYPLDYTTALAVELLGVQQFDLVLDLCAGVGGKSIAISQFLSNSASLT 147 Query: 268 ALDVSKRRLEKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT--- 321 A + R +LR N+ + + + + VLVDAPC+ Sbjct: 148 ANEQRGDRCARLRRNIKEYVPSNYVPVTVTQRKPETWHDPSTYHRVLVDAPCTGERQLLQ 207 Query: 322 -IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 +H V+ + QR LLL+ I +PGG +V++ CS+ +++EVV++ Sbjct: 208 HSGKHAVSPLHWSLQACVELSHTQRGLLLRSIETCRPGGRIVYTTCSISPLENDEVVREA 267 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ + VEL+ + + + PD + + + Sbjct: 268 LKRTRCQVELMHPPVPIGEKTEFGHI--------VLPDRDNGRGPA-------YYCVIHK 312 Query: 441 L 441 + Sbjct: 313 I 313 >gi|290993041|ref|XP_002679142.1| NOL1/NOP2/sun family protein [Naegleria gruberi] gi|284092757|gb|EFC46398.1| NOL1/NOP2/sun family protein [Naegleria gruberi] Length = 463 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 71/428 (16%), Positives = 140/428 (32%), Gaps = 61/428 (14%) Query: 56 TLRFLPRIDAVLDF---VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 L++ ID ++ +K Q +LR+ + + L+ + + + E K Sbjct: 56 VLKYHKIIDKIIAESGLFKKKPSLKKD---QGMLRIIMFEALFGEKSGDSTSIE--ELWK 110 Query: 113 RDKE-----------------------NRHFAKLVNSILRRVSREKIELLQRIAGISIIP 149 R + + N K + Q + Sbjct: 111 RYDKINFDLFKLGRTEYATWKSLLDKEKKKLGYTTNEGFVDPKYAKSKTHQHDNPEIELI 170 Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML-PTGGIRLKEL 208 + + +E + S+ + L D + + + L Sbjct: 171 RYVRVNTLKTTKEEVINKFSELGYEYRPVGLDKTDDFDKNEKSIVEDNHLTNDVLALYPS 230 Query: 209 PESIVSLPGFAEGVWWVQDASASIPVQLFGTL------NNLSVLDLCAAPGGKTAQLI-- 260 ++ L QD S+ P L N ++D C+APG KT L Sbjct: 231 NVTLHDLEMIKSYEIIAQDKSSCFPPFLIHKELGGKLGKNDCLIDACSAPGNKTCYLAAL 290 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPC 316 ++ A + +K R E L+ + + D P A+++D C Sbjct: 291 FPSNQIYAYERNKNRYETLKNRMVLAGASNVECKLDDFLQTNPSDPKFKNVKAIMLDPSC 350 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEE 375 S +G + + + ++ FQ KLL +F P + +S CS+ ++++E Sbjct: 351 SGSGIGHGN-----SIKKERLLSLQQFQLKLLTHCFNF--PNVQFISYSTCSVCEEENEC 403 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V + L++S E+V W+ + + + +R+ P +GFF Sbjct: 404 VTEMGLKASNGAFEVV-HTFPEWEHRGLESSPVGDKCVRVDP--------KRDKTNGFFV 454 Query: 436 VALRRLIQ 443 V RR+ + Sbjct: 455 VCFRRVNK 462 >gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. 2250] gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. race 4] gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. race 4] gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae pv. mori str. 301020] gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 165 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNV---DGAYFRELLHGVATNKT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141 Query: 121 A 121 Sbjct: 142 K 142 >gi|148665818|gb|EDK98234.1| NOL1/NOP2/Sun domain family 3 [Mus musculus] Length = 344 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 22/291 (7%) Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220 +L + + L + L + +P Sbjct: 50 WQYAILFNRFNYPFELEKALHLRGYHTVLQGALPHYPKSMKCYLSRTPDRMPSERHQTGS 109 Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSK---R 274 +++ +A++ +PV + +VLDLCAAPGGK+ L+ + + R Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGYLLCNEYDRPRGR 169 Query: 275 RLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330 L + + L + E+D + + FD VLVDAPCS+ + Sbjct: 170 WLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKA 229 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 Q +L+ I ++PGG++V+S C+L K ++++V+ +VL S V + Sbjct: 230 AYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLTSDSNIVPV 289 Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + P+ + + L++ Sbjct: 290 DISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGP-------MYIAKLKK 333 >gi|71411469|ref|XP_807983.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70872093|gb|EAN86132.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 954 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 65/283 (22%), Positives = 95/283 (33%), Gaps = 67/283 (23%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA-------------K 265 E + Q S+ +PV L +VLDLCA+PG KT + Sbjct: 299 NERLISFQSTSSMLPVLLLDPRPGEAVLDLCASPGSKTTLIHDYMFGISSSSKSLLATGC 358 Query: 266 VTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCP----KKLFDAVLVDAPCSSTG 320 + A D R + L L + A I+ P +D VLVDAPCS G Sbjct: 359 IVANDAVFSRTKTLSQRLQSVSPSIAVTQIQGQTLPAQPIASGGVRYDKVLVDAPCSGEG 418 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 + R ++ Q LL + GG VV+S C+L+ ++E V+ V Sbjct: 419 RMHRDVMSWRMWHPLKAMEFFTTQVSLLRHAVELCAAGGCVVYSTCTLNPLENEAVISTV 478 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALS-------------------------------P 409 L + + P + LS P Sbjct: 479 LADGEVELIRPPHFMTADSGWHFSRGLSHWLVPSRAGGFLHTFAESEAKGEGTAVELFPP 538 Query: 410 EG-----------WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG +R+ P +SG +GFF ALR++ Sbjct: 539 EGNGEIQKALESCCLRVLPHR-------NSGAEGFFLAALRKV 574 >gi|255574263|ref|XP_002528046.1| RNA binding protein, putative [Ricinus communis] gi|223532576|gb|EEF34364.1| RNA binding protein, putative [Ricinus communis] Length = 586 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD VL+DAPCS+ G R + A +QR++ Q + V+PGG++ Sbjct: 440 FDPDSFDRVLLDAPCSALGL--RPRLFAGEETVKSLRSHAVYQRRMFDQAVKLVRPGGVI 497 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD- 418 V+S C+++ ++E +V+ L + + L P + + P+G++ + P Sbjct: 498 VYSTCTINPGENEALVRYALDTYK-FLSLAPQHLRVGGPGLVGSCEFPDGYMEEWLRPGE 556 Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438 + GFF Sbjct: 557 EELVQRFDPSSPLDTIGFFIAKF 579 >gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1] gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1] Length = 173 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + R IV+ +R Sbjct: 30 AARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVSGVVREQ 89 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID ++D +L L R L+ ++R ++ + D+ VV V+ A Sbjct: 90 KQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 148 Query: 118 RHFAKLVNSILRRVSREK 135 + +VN++L +++R+ Sbjct: 149 KDETGMVNAVLDQIARQF 166 >gi|289810628|ref|ZP_06541257.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 136 Score = 93.0 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 2/116 (1%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324 A + S R++ L N+ R + + D + FDA+L+DAPCS G +R+ Sbjct: 21 LANEFSASRVKVLHANISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRK 80 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 PD L + + A QR+LL ++PGG +V+S C+L++Q++E V + Sbjct: 81 DPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWL 136 >gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella frigidimarina NCIMB 400] gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400] Length = 134 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + + D+E+ + D R ++ Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSQ---NKVADVEHEFLTEQNTDGVDVAYFRELLTGVAS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID +L L + ++R++ ++ + DV ++ +E AK Sbjct: 58 KTSQIDELLKPHLDRKFEEVSPVEKAIVRLATYELTFRKDVPFKVAINEGIELAKAF-GA 116 Query: 118 RHFAKLVNSILRRVSRE 134 K VN +L ++ + Sbjct: 117 EDSHKFVNGLLDKLVKH 133 >gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 166 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 AR +++ L + SL + D+ F S D R I++ +F Sbjct: 27 KRREARQLATQALYQWHMAKQSLNEIEAQFRVDNDF---SDVDGAYFREILHGVPQFKTE 83 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 84 IDTALTPCLDLTIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGHK 143 >gi|170063668|ref|XP_001867201.1| williams-beuren syndrome critical region protein [Culex quinquefasciatus] gi|167881252|gb|EDS44635.1| williams-beuren syndrome critical region protein [Culex quinquefasciatus] Length = 468 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 88/230 (38%), Gaps = 19/230 (8%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRR 275 + + +Q+ + +P L V+D+CAAPG KT L + + +V A++ R Sbjct: 67 HKQKFVLQNKACLLPTYLLNPAKKSVVMDMCAAPGLKTTHLANLMKNKGRVYAVERDANR 126 Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--DAVLVDAPCSSTGTIRRHPDVLWTRD 333 + L + I D ++ + +L+D CS +G + R + D Sbjct: 127 YKLLCDYSADFGV--IKTINDDCLLVGDEQAPGVEYILLDPSCSGSGMVDR-LKLNEEID 183 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + + Q KLL ++ +V+S CS+ +++E +VQ L +LV Sbjct: 184 KQRLYRLGGLQYKLLTHAMNAFPAAKRIVYSTCSIFPEENEAIVQGAL-RHNGHWKLVDA 242 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD---GFFAVALRR 440 +A K + P + EK D G F L R Sbjct: 243 KAALGKEWHNVGSPD-------YPGIGEKCLYARPESDLTIGMFVAVLER 285 >gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158] gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158] Length = 145 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKDLLDAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ +++ V++ AVE AK + Sbjct: 58 EHATLVEAIAPALDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1] gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1] Length = 133 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + ++ L Y D+ + +VN Sbjct: 1 MKRRT-AREKALQALFQMDMSGMTADEALTNVYEDTPSDE-------YLENLVNGATENK 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +ID ++ L S R + +LRV+V ++L DV V++ A+E AK + Sbjct: 53 EKIDGLIKENLEKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEIAKTY-GDD 111 Query: 119 HFAKLVNSILRR 130 K +N +L + Sbjct: 112 QSGKFINGVLSK 123 >gi|146083585|ref|XP_001464781.1| hypothetical protein [Leishmania infantum JPCM5] gi|134068875|emb|CAM59809.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 1175 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +D VLVDAPCS G + R ++ Q LL + + K GG +V++ C Sbjct: 530 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 589 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413 +L+ ++E VV VLR+ VEL+P + ++ G + Sbjct: 590 TLNPLENEAVVSAVLRACGGAVELIPPPRPLPRRTELQTEEDVGGSVPPLRLTAGLRSWD 649 Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428 R+ PDM ++ + Sbjct: 650 VPSGAGGFLCSAAEAYAQGESAARLPPDMFAPASAGAEGDRTDISGALQRCCRRVMPHLN 709 Query: 429 GM-DGFFAVALRRLI 442 G DGFF L + Sbjct: 710 GNADGFFVAVLEKRA 724 >gi|322498196|emb|CBZ33271.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1175 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 59/195 (30%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +D VLVDAPCS G + R ++ Q LL + + K GG +V++ C Sbjct: 530 YDRVLVDAPCSGEGRMGRDALSWRLWHPGRGIEFFPLQCALLQRAVRLCKTGGRIVYATC 589 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI------------- 413 +L+ ++E VV VLR+ VEL+P + ++ G + Sbjct: 590 TLNPLENEAVVSAVLRACGGAVELIPPPRPLPRRTELQTEEDVGGSVPPLRLTAGLRSWD 649 Query: 414 -----------------------RITPDML----------------------EKIDGVSS 428 R+ PDM ++ + Sbjct: 650 VPSGAGGFLCSAAEAYAQGESAARLPPDMFAPTSAGAEGDRTDISGALQRCCRRVMPHLN 709 Query: 429 GM-DGFFAVALRRLI 442 G DGFF L + Sbjct: 710 GNADGFFVAVLEKRA 724 >gi|312383507|gb|EFR28570.1| hypothetical protein AND_03366 [Anopheles darlingi] Length = 461 Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 80/436 (18%), Positives = 146/436 (33%), Gaps = 75/436 (17%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV-LI 72 +L V ++ S+ LL E A R + D++LV LP+I+A++ + L Sbjct: 1 MLRQVTEEKKSIKTLLRDEKHFRAGRTI--MDRLLV---------NLPQINAIIAHIDLT 49 Query: 73 SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVS 132 + PR L + L ++++LY L VE +R + A V Sbjct: 50 TKEPRLNPWLARAL---ISELLYGRGELLGA-SLPVECVRRHETEIRKAYEATKASIPVV 105 Query: 133 REKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHK 192 + E ++ +RL G Sbjct: 106 QRFEEPRFVRVNTELLNLEGAKRLMQEEGW------------------------------ 135 Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + +S+ + +P L VLD+C+AP Sbjct: 136 ILVDEEFPDYQSFLNRVQSLTDSEY----------MACLVPTYLLKPPKKSVVLDMCSAP 185 Query: 253 GGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 G K L + + ++ A++ + R + L + I+ D D +++ Sbjct: 186 GMKATHLASLMKNKGRLYAVERNAERYKLLCQYAAPFGV--IKTIQADCLDLTDEQVPGV 243 Query: 308 DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCS 367 + +L+D CS +G + R + D + K A Q KLL ++ +V+S CS Sbjct: 244 EYILLDPSCSGSGMLDR-LRMPEPVDEGRLYKLAGLQYKLLSHAMNSFPNARRIVYSTCS 302 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + +++E++V VL L+ + K + P + E+ Sbjct: 303 IHPEENEKLVMGVL-RHNSHFRLLDARTELGKEWLNLGSPD-------YPGVDERCLYAR 354 Query: 428 SGMD---GFFAVALRR 440 S D G F R Sbjct: 355 SETDLTIGMFVAVFER 370 >gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1655] gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1655] Length = 145 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + + + G + + D+ L+ I++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAAPSEIDAQLRGALGY---DKADKTLLDTILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|239932444|ref|ZP_04689397.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672] Length = 150 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 13/139 (9%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD VLVD PC+ G +RR P+ W R +D+ A QR LL + V+ GG+V Sbjct: 23 WRPGSFDRVLVDVPCTGLGALRRRPEARWRRRPEDLAGFAPLQRGLLRTALESVRVGGVV 82 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE 421 ++ CS ++ VV +L P EL+ D+ +++ P + Sbjct: 83 GYATCSPHLAETRAVVADLLGQFP-DAELIDARPLLPGVPDLGEGPD----VQLWPHL-- 135 Query: 422 KIDGVSSGMDGFFAVALRR 440 G D + +RR Sbjct: 136 ------HGTDAMYLALIRR 148 >gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145] gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145] Length = 139 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + + + D+ S+ D ++ Sbjct: 1 MKPAARRKARKLAVQAVYSWQLSQNTFNEIEAQFLTDNDT---SKVDVDYFLELLRGVGA 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 F +D + L + +LR++ ++ DV ++ A+E AK Sbjct: 58 FYKSLDEAIAPYLDRPISELDPVELAVLRIAAYELRERYDVPYKVAINEAIELAKSF-GA 116 Query: 118 RHFAKLVNSILRR 130 + VN +L + Sbjct: 117 DDSHRFVNGVLDK 129 >gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-071] gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-071] Length = 128 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDERDDYMEK--------LVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLR+SV +I YL DV + ++ ++E AK + Sbjct: 52 VEIDAIIEPNLDNWRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae 642] Length = 165 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L SL + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQWHMAGHSLNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNKT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|30725798|ref|NP_849256.1| putative methyltransferase NSUN3 [Mus musculus] gi|81899873|sp|Q8CCT7|NSUN3_MOUSE RecName: Full=Putative methyltransferase NSUN3; AltName: Full=NOL1/NOP2/Sun domain family member 3 gi|26327953|dbj|BAC27717.1| unnamed protein product [Mus musculus] gi|116138396|gb|AAI25629.1| NOL1/NOP2/Sun domain family member 3 [Mus musculus] gi|116138399|gb|AAI25631.1| NOL1/NOP2/Sun domain family member 3 [Mus musculus] Length = 348 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 107/291 (36%), Gaps = 22/291 (7%) Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE---- 220 +L + + L + L + +P Sbjct: 50 WQYAILFNRFNYPFELEKALHLRGYHTVLQGALPHYPKSMKCYLSRTPDRMPSERHQTGS 109 Query: 221 -GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSK---R 274 +++ +A++ +PV + +VLDLCAAPGGK+ L+ + + R Sbjct: 110 LKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGYLLCNEYDRPRGR 169 Query: 275 RLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLW 330 L + + L + E+D + + FD VLVDAPCS+ + Sbjct: 170 WLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKA 229 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 Q +L+ I ++PGG++V+S C+L K ++++V+ +VL S V + Sbjct: 230 AYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISEVLTSDSNIVPV 289 Query: 391 VPLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + P+ + + L++ Sbjct: 290 DISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGP-------MYIAKLKK 333 >gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces hygroscopicus ATCC 53653] gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces himastatinicus ATCC 53653] Length = 152 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L + +V Sbjct: 1 MAARNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVSEYTMQLVEGYAEHT 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID +L + +L R + +LR+ ++++ D D V+D AV+ AK Sbjct: 61 ARIDELLATYAVGWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQLAKEF-STD 119 Query: 119 HFAKLVNSILRR 130 VN +L R Sbjct: 120 DSPSFVNGLLGR 131 >gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii DJ] gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii DJ] Length = 131 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 5/120 (4%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L L + D+ F + D I++ R ID +L Sbjct: 1 MQALYQWHVAGQPLNEIEAQFRVDNDFSTV---DGAYFHEILHGVPRQKTEIDEAFAPLL 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L +LR+S ++ LDV V++ +E AK K VN +L + Sbjct: 58 DRPLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDG-HKFVNGVLDK 116 >gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49] Length = 145 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKALLDAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + L L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLVEALTPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037] gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037] Length = 136 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 10/127 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVT 56 M + AR + +L + L + A R S+ D+ R IV+ Sbjct: 1 MSARTKARKRALDILFQADVRG----EELPIMLAAEAKRAASEPDRQASWLYARDIVDGV 56 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 + ID + SL R + LLR+ +ILY D V +D AVE AK Sbjct: 57 IDNRDAIDEQITTFSKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVELAKEF 116 Query: 115 KENRHFA 121 + + Sbjct: 117 STDDSGS 123 >gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua Clip11262] gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262] gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL S4-378] gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL J1-023] Length = 128 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYME--------QLVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLR+SV +I YL DV + ++ ++E AK + Sbjct: 52 AEIDAIIEPNLDNWRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces clavuligerus ATCC 27064] Length = 142 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ +S+ +L S +V ++ Sbjct: 1 MAARNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVSEYTMELVEGYAQYA 60 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 PRID ++ L R + +LR+ +++++D D V+D AVE AK + Sbjct: 61 PRIDELIATYAEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVELAKEFSTDE 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|71400411|ref|XP_803043.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70865607|gb|EAN81597.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 406 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 39/177 (22%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 + FD VL D CS GT+R+ D+ + + Q ++LL+G+ K GGIV Sbjct: 21 PSESKFDRVLCDVMCSGDGTLRKSMDMWPRWNVFQGAELHNTQIRVLLRGMMLCKKGGIV 80 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-----KSIDMAMALSPEGWIRIT 416 V+S CSL+ + E VV + L + L+ S +D L+ + R+ Sbjct: 81 VYSTCSLNPVEDEAVVSECLLQAKGAFRLMDPTSLVPGLVAAPGLDDWSLLTKDLKARLH 140 Query: 417 ------------------------P----------DMLEKIDGVSSGMDGFFAVALR 439 P ++ GFF + Sbjct: 141 TMEEAQVFAETSASSGISYRATMFPNKARLQEQNIHYTRRVLPHLQDTGGFFVAVME 197 >gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB5] gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5] Length = 174 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + R IV+ +R Sbjct: 31 AARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPAEAAFFRDIVSGVVRDQ 90 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++D L L R ++ ++R ++ + D+ VV V+ A Sbjct: 91 TKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 149 Query: 118 RHFAKLVNSILRRVSREK 135 + +VN++L +++R+ Sbjct: 150 KDETGMVNAVLDQIARQF 167 >gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter hamburgensis X14] gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14] Length = 160 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + + R +V +R Sbjct: 17 AARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGDKYLPAEAAFFRDVVAGVVRDQ 76 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 R+D ++D L L R L+ +LR ++ + DV VV V+ A Sbjct: 77 ARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEYVDVAHAFI-E 135 Query: 118 RHFAKLVNSILRRVSREK 135 + +VN++L +++R Sbjct: 136 KEEVGMVNAVLDQIARRF 153 >gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB18] gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18] Length = 169 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + L + + +Q + +V+ +R Sbjct: 25 AARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQYLPAEQAFFQDVVSGVVRDQ 84 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++D L L R L+ ++R ++ + DV VV V+ A E Sbjct: 85 AKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDVPARVVVSEYVDVANAFVEG 144 Query: 118 RHFAKLVNSILRRVSREK 135 +VN++L +++R+ Sbjct: 145 EE-TGMVNAVLDQIARQF 161 >gi|195569733|ref|XP_002102863.1| GD20129 [Drosophila simulans] gi|194198790|gb|EDX12366.1| GD20129 [Drosophila simulans] Length = 534 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 16/235 (6%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P + +Q+ + + +L +VLD+CAAPG KT + + + A++ Sbjct: 301 RHPLVHGKRFILQNKATCLAAELLAPPTGATVLDMCAAPGMKTMHICNVMQNKGCIYAVE 360 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328 +R L + I DA D P++ D +LVD CS +G R Sbjct: 361 QDYKRYNTLCDITEEAGCAIVKPIFSDALDLTPERFADVEYILVDPSCSGSGMQNRMTVC 420 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 +D + K Q K+L +S + + CSL K+++E+VVQ+ L+ +P Sbjct: 421 DEPKDDRRLQKLQGLQIKILSHAMSSFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSYK 480 Query: 389 EL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L L + + D + + P S DG F + Sbjct: 481 LLSCKKALRNKWHNVGDTDYPNIGKNVLYCLP--------ESDLTDGIFLALFEK 527 >gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas palustris TIE-1] gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1] Length = 174 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + R IV +R Sbjct: 30 AARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVAGVVREQ 89 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID ++D +L L R L+ ++R ++ + D+ VV V+ A Sbjct: 90 KQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 148 Query: 118 RHFAKLVNSILRRVSREK 135 + +VN++L +++R Sbjct: 149 KDETGMVNAVLDQIARRF 166 >gi|302338884|ref|YP_003804090.1| Fmu (Sun) domain protein [Spirochaeta smaragdinae DSM 11293] gi|301636069|gb|ADK81496.1| Fmu (Sun) domain protein [Spirochaeta smaragdinae DSM 11293] Length = 297 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 26/258 (10%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 +L P+ LK P + G + + D ++ + G L VLD+CAA Sbjct: 54 ELYGERWPSLAEALKREPRPVPFSEGLGKS--YYLDQASIDTAKALGALPEEEVLDMCAA 111 Query: 252 PGGK---TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA------EDIIEMDAFDYC 302 PGGK A + + A D S R +L+ + + + + Sbjct: 112 PGGKSLVIAAAMRGKGSLIANDRSASRRARLKRVIAEHLIPDYASIVEITSHDASKWGLY 171 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + +D +L+DAPCSS + P L + A + ++PGG+++ Sbjct: 172 EQNRYDRILLDAPCSSERHVLLDPVHLERWSPSRTRRLAVQAFAMAAAAADALRPGGVLL 231 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C++ +++ V++K+L+ +E L+ Y ++ + G I + PD Sbjct: 232 YSTCTISPFENDGVIEKLLKRRGDFMEKAELSLPYGEA-------TRFGMI-VLPDREAG 283 Query: 423 IDGVSSGMDGFFAVALRR 440 +A LR+ Sbjct: 284 KGP-------MYAALLRK 294 >gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c] gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c] Length = 140 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + L + E + D ++ +R Sbjct: 1 MKPAARRKARELAVQAVYSWQMSKNPLDQI---ELSIVTSNNMQDVDTEYFLELLRAVVR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +DA + L +LR++ +++ +DV V++ A+E AK Sbjct: 58 RTAELDAKIKPYLGRLPEELDPVENAILRLATYELVERIDVPYKVVINEAIELAKSF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EESHKFVNGVLDK 129 >gi|323475333|gb|ADX85939.1| Fmu (Sun) domain protein [Sulfolobus islandicus REY15A] gi|323478057|gb|ADX83295.1| Fmu (Sun) domain protein [Sulfolobus islandicus HVE10/4] Length = 368 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 65/352 (18%), Positives = 127/352 (36%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + A I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEADKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L ++ I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|221051886|ref|XP_002257519.1| NOL1/NOP2/sun family methyltransferase [Plasmodium knowlesi strain H] gi|193807349|emb|CAQ37854.1| NOL1/NOP2/sun family methyltransferase [Plasmodium knowlesi strain H] Length = 1086 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 81/236 (34%), Gaps = 58/236 (24%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEM------------DAFDYCPKKLFDAVLVDA 314 A D + +R L L +H + D + K+ FD+VL D Sbjct: 292 IANDANFKRCCMLFHRLKNIHSNCLVVTNNNAINFPYIYMKDDEGNTNEKRYFDSVLCDV 351 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS GT+R+ ++ + + Q +L + I K GG +V+S CSL+ ++E Sbjct: 352 PCSGDGTVRKDRNIWLNWNPFNAYNLFQMQVSILKRSIELTKEGGNIVYSTCSLNPIENE 411 Query: 375 EVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSPEG----------------WIR-- 414 V+ +V + ++L+ + ++ ++ +++ Sbjct: 412 AVICEVFNSVENRNCLKLMNFGNELIDKLNFKQGITEWKVMMDDQWFDTYEEYCSYLQNK 471 Query: 415 ----------------ITPD----------MLEKIDGVSSGMDGFFAVALRRLIQP 444 TP +++ GFF +++ +P Sbjct: 472 EHGKYKKIYDKIQQGMFTPGEEFMNEINLKYVKRFFPHHYNAGGFFIAVIKKCGKP 527 >gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei YIT 12066] gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei YIT 12066] Length = 143 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + + S + D + D + +++ + I Sbjct: 13 RHKARHFAMQAIYQWQMTGQSAGEIERQFLEDQPIQG---ADLDYMHDLISGVVANFEHI 69 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAK 122 D V + L L + +LR+ ++LY ++ V++ ++ AK + K Sbjct: 70 DEVYEPFLSRPLKDLDQVDKAILRLGTFELLYRQEIPFRVVINESIMLAKEF-AEQDSHK 128 Query: 123 LVNSILRR 130 VN +L + Sbjct: 129 FVNGVLDK 136 >gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707] gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707] Length = 148 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 7/132 (5%) Query: 1 MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + L + + + + D + ++ + Sbjct: 1 MSNRRSKARTAALQGLYQWQLMGQDVDKIDIEFIV----QDIRGIDHAYFQELLRGVPQR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +D L L + +LR+ ++L ++ V++ A+E AKR Sbjct: 57 QGELDECLGPFLDRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRF-GAE 115 Query: 119 HFAKLVNSILRR 130 H + VN IL + Sbjct: 116 HGHRYVNGILDK 127 >gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36] gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36] Length = 140 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + ++ + D F S D R +V Sbjct: 1 MKPSERSKARQFATQAIYQWQMTQETVANIEHQFVTDQDF---SGTDATYFRELVLGVSL 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L L + +LR+S ++L DV V++ ++E AK D Sbjct: 58 NSAELDELMSPFLSRPLNDLDLVEKAILRLSTFELLKRQDVPYKVVINESIELAK-DFGA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EDSHKFVNGVLDK 129 >gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121] gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121] Length = 167 Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + + + + D L D+ R ++ + Sbjct: 27 RSAARSFALQAVYQWQMNHAPVNEIEAQFAVDH---DLGTCDKAYFRELLQGVTAKAKSL 83 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122 D + + +L L LR+ ++ LDV ++ +VE AK + K Sbjct: 84 DDLFEELLDRPLAELDPIELATLRIGSYELAERLDVPYRVAINESVELAKSFGASES-HK 142 Query: 123 LVNSILRR 130 VN IL + Sbjct: 143 YVNGILDK 150 >gi|195353701|ref|XP_002043342.1| GM10043 [Drosophila sechellia] gi|194127456|gb|EDW49499.1| GM10043 [Drosophila sechellia] Length = 534 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 16/235 (6%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P + +Q+ + + +L +VLD+CAAPG KT + + + A++ Sbjct: 301 RHPLVHGKRFILQNKATCLAAELLAPPTGATVLDMCAAPGMKTVHICNVMQNKGCIYAVE 360 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328 +R L + I DA D P++ D +LVD CS +G R Sbjct: 361 QDYKRYNTLCDITEEAGCAIVKPIFSDALDLTPERFADVEYILVDPSCSGSGMQNRMTVC 420 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 +D + K Q K+L +S + + CSL K+++E+VVQ+ L+ +P Sbjct: 421 DEPKDDRRLQKLQGLQIKILSHAMSSFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSYK 480 Query: 389 EL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L L + + D + + P S DG F + Sbjct: 481 LLSCKKALRNKWHNVGDTDYPNIGKNVLYCLP--------ESDLTDGIFLALFEK 527 >gi|115534021|ref|NP_497088.3| hypothetical protein Y53F4B.4 [Caenorhabditis elegans] gi|85539533|emb|CAB70100.3| C. elegans protein Y53F4B.4a, confirmed by transcript evidence [Caenorhabditis elegans] Length = 285 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 100/264 (37%), Gaps = 24/264 (9%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDL 248 K + V + L +I + + + +QD ++ +P L V D Sbjct: 28 KDDEVYVDPHVENLIIFAPNIQNFYEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDT 87 Query: 249 CAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----FDY 301 CAAPG KT+ ++ + KV A+D + R+ ++ LD + D Sbjct: 88 CAAPGMKTSHAAAIMENQGKVWAMDRAADRVATMKQLLDASKVAIASSFCGDFLKTDVTD 147 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVKPG-G 359 +VD PCS +G ++R ++ + + + K Q +L + PG Sbjct: 148 KKFSKVKFAIVDPPCSGSGIVKRMDEITGGNAEKERLEKLKNLQAMILKHALKL--PGLK 205 Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 V+S CS+ ++++E+VV +VL + L W + E +R P Sbjct: 206 RAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVLKKNVLPEWTYRGLKTYEVGEHCLRANP 265 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + +GFF R+ Sbjct: 266 KVTL--------TNGFFVAVFERV 281 >gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia psychrerythraea 34H] gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia psychrerythraea 34H] Length = 138 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + + + D++ R D + ++ Sbjct: 1 MKPSPRRKARELAVQAVYSWQVSKNPVNDIEVNFIADNSKRRF---DIEYFQLLLRGVTT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 + ID + + L + +LRV+V ++ DV V++ A+E AK + Sbjct: 58 NIGSIDEAIIPYVDRPLDDIDQVEKAILRVAVFELKDCTDVPYRVVINEAIELAKSFAAD 117 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 118 DS-HKFVNGVLDK 129 >gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas palustris CGA009] gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009] Length = 174 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 9/146 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + R IV +R Sbjct: 30 AARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEGEQYLPAEAAFFRDIVAGVVREQ 89 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID ++D +L L R L+ ++R ++ + D+ VV V+ A Sbjct: 90 KQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 148 Query: 118 RHFAKLVNSILRRVSREKIELLQRIA 143 + +VN++L +++R E + Sbjct: 149 KDETGMVNAVLDQIARRFREDEFTRS 174 >gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces bingchenggensis BCW-1] Length = 150 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L + +V ++ Sbjct: 1 MAARNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVSEYTMQLVEGYAQYT 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + +L R + +LR+ ++++ D D V+D AV+ AK + Sbjct: 61 ARIDELISTYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia multivorans ATCC 17616] gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia multivorans ATCC 17616] gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2M] gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2] gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans CGD1] gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616] gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC 17616] gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans CGD1] gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2] gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans CGD2M] Length = 145 Score = 92.3 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKALLDAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 + L L + + + +L ++ ++ +++ V++ AVE AK + Sbjct: 58 EHATLVDALTPSLDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K] gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C] gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K] gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1] Length = 142 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 5/132 (3%) Query: 1 MKSG-MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S AR + L + + L + D L +V + Sbjct: 1 MTSRRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMD--LAEGLVRGVAQH 58 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D ++ V + L R + +LR++V ++L DV V++ A+E K+ + Sbjct: 59 RRAVDEAIEAVSTNWRLDRMAKVDRNVLRLAVFELLRTDVPVKVVINEAIELGKKY-GSE 117 Query: 119 HFAKLVNSILRR 130 VN +L + Sbjct: 118 SSGAFVNGVLDK 129 >gi|215430294|ref|ZP_03428213.1| putative fmu protein [Mycobacterium tuberculosis EAS054] gi|289753489|ref|ZP_06512867.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] gi|289694076|gb|EFD61505.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054] Length = 120 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 13/133 (9%) Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +LVDAPC+ G +RR P+ W R D+ A QR+LL I+ +PGG+V+++ CS Sbjct: 1 MLVDAPCTGLGALRRRPEARWRRQPADVAALAKLQRELLSAAIALTRPGGVVLYATCSPH 60 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ V LR P+ + L +++ P G Sbjct: 61 LAETVGAVADALRRHPVHAL-----DTRPLFEPVLAGLGEGPHVQLWPH--------RHG 107 Query: 430 MDGFFAVALRRLI 442 D FA ALRRL Sbjct: 108 TDAMFAAALRRLT 120 >gi|300123975|emb|CBK25246.2| unnamed protein product [Blastocystis hominis] Length = 305 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 7/140 (5%) Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P+++FD VL+D PCS+ G P +L +D++ +QR+ + + ++ GG +V Sbjct: 167 PREIFDRVLLDPPCSALGL---RPRLLHEVTMNDLMGYRNYQRQFIEVAVQLLRVGGTLV 223 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 +S C++D ++EE V ++R P+ + + + K+ LS E + Sbjct: 224 YSTCTIDPMENEENVAFIVREFPMRLVPIEAEWRFGKAGLENCGLSREQCEMV----QRY 279 Query: 423 IDGVSSGMDGFFAVALRRLI 442 GFF + Sbjct: 280 NMTEKCNSIGFFVSKFEKTA 299 >gi|227831020|ref|YP_002832800.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15] gi|227457468|gb|ACP36155.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.S.2.15] Length = 368 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 127/352 (36%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTGIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ + ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEISEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L ++ I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DISEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|284998516|ref|YP_003420284.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5] gi|284446412|gb|ADB87914.1| Fmu (Sun) domain protein [Sulfolobus islandicus L.D.8.5] Length = 368 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTGIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L ++ I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DISEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|269859742|ref|XP_002649595.1| 16S rRNA m(5)C 967 methyltransferase [Enterocytozoon bieneusi H348] gi|220066958|gb|EED44427.1| 16S rRNA m(5)C 967 methyltransferase [Enterocytozoon bieneusi H348] Length = 352 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 128/357 (35%), Gaps = 32/357 (8%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISII--P 149 +I + + N + +N + + + ++ Sbjct: 15 EIYKTTTPER-----YYPLLHKVLINYDLLRDINKQAHYMKNIPLGCVMIFEILTGHLKN 69 Query: 150 EWFKERLENFYGKERVLAISDACIS-PLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL 208 + F+ + + G +++ I + I + + D++ +K + + +K Sbjct: 70 DGFRRKFKKLLGNRQLIDIYEQDIYIRMNMQKGTVEDLQDLEYKETEIDNVFKILNIKNS 129 Query: 209 PESIVS-LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGA 264 +SI + + +Q + +PV V+D AAPG KT Q + Sbjct: 130 TQSIKKYIVTMLKTKVKIQSFESCLPVHFLSPEPGSIVIDATAAPGNKTTQCADKLNNTG 189 Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK-LFDAVLVDAPCSSTGTIR 323 K+ A++ K R + L+ + +++ D D P D ++VD CS +G Sbjct: 190 KILAVEKDKNRFQILQTMIKDYGCTNVEVVNRDFLDIEPSSITPDYIIVDPTCSGSGI-- 247 Query: 324 RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 V + ++ I K FQ +L + F +V+S CS+ ++ EEV++++L Sbjct: 248 ---HVNYKKNEQRIEKLKNFQFIILNHALKFNAK--KIVYSVCSIHPEEGEEVIKEILEK 302 Query: 384 SPIP-VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 +P ++ + ++ D D + + GFF L Sbjct: 303 NPQYTLQPIAISGKDQGCNDYDFC-----------DKVVRSKKELEKATGFFVCVLV 348 >gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2] gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2] Length = 150 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L +++ + + F + D+ +++ L + Sbjct: 8 SARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKV---DREYFHDLLHGVLGQVK 64 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D L L + + +LR+ ++ DV V++ +E AK F Sbjct: 65 TLDEQLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSF 124 Query: 121 A 121 Sbjct: 125 K 125 >gi|21356579|ref|NP_650787.1| CG42358 [Drosophila melanogaster] gi|7300487|gb|AAF55642.1| CG42358 [Drosophila melanogaster] gi|17862234|gb|AAL39594.1| LD16340p [Drosophila melanogaster] gi|220943050|gb|ACL84068.1| CG42358-PA [synthetic construct] gi|220953274|gb|ACL89180.1| CG42358-PA [synthetic construct] Length = 433 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 10/232 (4%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALD 270 P + +Q+ + + +L + +VLD+CAAPG KT + + + +++ Sbjct: 200 RHPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQNKGCIYSVE 259 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDV 328 R L I DA + P++ D +LVD CS +G R Sbjct: 260 QDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEYILVDPSCSGSGMQNRMTVC 319 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 ++ + K Q K+L + + + CSL K+++E+VVQ+ L+ +P Sbjct: 320 DEPKEDKRLQKLQGLQIKILSHAMGAFPNVKRIAYCTCSLWKEENEQVVQRCLQLNPSFK 379 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L + K ++ P + S DG F + Sbjct: 380 LLSCKKALRNKWHNVGDKDYPNIGKNVL-----YCQPDSDLTDGIFLALFEK 426 >gi|327310359|ref|YP_004337256.1| PUA domain-containing protein [Thermoproteus uzoniensis 768-20] gi|326946838|gb|AEA11944.1| PUA domain containing protein [Thermoproteus uzoniensis 768-20] Length = 379 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 25/231 (10%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDV 271 + L FA G ++ Q A +L L +DL A+PGGKT + V A D Sbjct: 168 LRELEEFARGYFYDQSMPAMWAGRLAAALGARRAIDLNASPGGKTTHMAQLSIHVIAFDR 227 Query: 272 SKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLF---DAVLVDAPCSSTGTIRRHPD 327 S+ ++E++ N RL L + D++ D+ F D LVD PCS G P Sbjct: 228 SRPKVERIIENARRLGLEHLVDVLVHDSRYVDRDFPFLRGDVALVDPPCSDLGV---RPK 284 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + T D+ A +QR+ + + V++S C+L ++E V Sbjct: 285 LSHTISMRDVETLARYQRQFIAAAARLAR---YVIYSTCTLTFTENEGNVLWA------- 334 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 E + L + R P++ + GFF L Sbjct: 335 SEELGLKTVSIYVPRAVEGWGCGNCRRFMPNVFDAP--------GFFLAVL 377 >gi|224082580|ref|XP_002306751.1| predicted protein [Populus trichocarpa] gi|222856200|gb|EEE93747.1| predicted protein [Populus trichocarpa] Length = 343 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 FD VL+DAPCS+ G R + D + K A +QR++ Q + V+PGG++V+ Sbjct: 200 PDSFDRVLLDAPCSALGL--RPRLFVGEVTIDSLKKHATYQRRMFDQAVKLVRPGGVIVY 257 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEG----WIRITPDM 419 S C+++ ++E +V+ L + + L N + SP G W+R + Sbjct: 258 STCTINPGENEALVRYALDTYK-FLSLASQNPRIGGPGLVGSFESPNGRTEEWLRPGEEE 316 Query: 420 LEKIDGVSSGMD--GFFAVAL 438 + SS +D GFF Sbjct: 317 FVQRFDPSSSLDTIGFFIAKF 337 >gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes EGD-e] gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes serotype 4b str. F2365] gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b H7858] gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a F6854] gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes Finland 1988] gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-561] gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes Clip81459] gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-194] gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes FSL N3-165] gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-503] gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes J0161] gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes J2818] gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262] gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes F6900] gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J2-064] gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes FSL F2-515] gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes LO28] gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-175] gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5578] gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5923] gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017] gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e] gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype 4b str. F2365] gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a F6854] gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b H7858] gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes FSL N3-165] gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes FSL R2-503] gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes F6900] gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5578] gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes 08-5923] gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262] gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes J2818] gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes FSL J1-194] gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017] gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes 1816] gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes 220] gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A] Length = 128 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLR+SV +I YL DV + ++ ++E AK + Sbjct: 52 AEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|74002502|ref|XP_849037.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 3 [Canis familiaris] Length = 334 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 95/230 (41%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL------DVSKR 274 +++ +A++ +PV + VLDLCAAPGGK+ L+ + Sbjct: 111 KKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSVALLQCADPGYLHCNEYDGLRFRW 170 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 + L + + + + E+D D + FD VLVDAPCS+ + Sbjct: 171 LKQTLESFIPQPLVDVIKVSELDGRDLGDAQPGTFDKVLVDAPCSNDRSWLFSSDSQKAA 230 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGG++V+S C+L K ++++V+ ++L S + + Sbjct: 231 CRISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVISEILNSYSNIIPVD 290 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 291 IKEMARTCSRDFTFAPTGQECGLLVIPDKGKAWGP-------MYIAKLKK 333 >gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1] gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1] Length = 132 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 10/135 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + L + S + + +VN T L Sbjct: 1 MMKRRTAREKALQALFQMDMNEASPEDAIRNALDGQESDD-------YLEKLVNGTATHL 53 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA++ L + +L R +LR++ +++Y DV ++ A+E AKR + Sbjct: 54 AEIDAMISQHLENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALEIAKRF-ADE 112 Query: 119 HFAKLVNSILRRVSR 133 AK +N +L ++ Sbjct: 113 KSAKFINGVLNQMKD 127 >gi|322820427|gb|EFZ27046.1| hypothetical protein TCSYLVIO_6750 [Trypanosoma cruzi] Length = 662 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 91/288 (31%), Gaps = 69/288 (23%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK----------------------TAQLI 260 Q+ + +P L LD+CA+PG K Sbjct: 105 ISRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVALGRHKVVPVDSDASPFTFDY 164 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL---------------YAEDIIEMDAFDYCPKK 305 S V A ++ +R L + RL L + Sbjct: 165 ESEGLVMANEIDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPNVKCAASLVGNADEDL 224 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD +L D CS GTIR+ P + + + Q ++ L+ + GG VV+S Sbjct: 225 RFDKILCDVVCSGDGTIRKAPHIFKIWSPREAINLQKTQIQIALRACHLSRVGGRVVYST 284 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS---------------IDMAMALSPE 410 CS++ ++E VV +++ + ++LV S ++ +A S E Sbjct: 285 CSMNPIENEAVVAQIVHRTRGAMKLVDARSLLPGLQCAPGLQRWVVTNFKGELVVAPSDE 344 Query: 411 GWIRITPD-----------------MLEKIDGVSSGMDGFFAVALRRL 441 + P + ++ G FF L ++ Sbjct: 345 AHEALFPPNTPGAYASAAVNELDLRLCMRLYPSHCGGGAFFIAVLDKV 392 >gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter winogradskyi Nb-255] gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255] Length = 161 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + + R +V +R Sbjct: 17 AARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEGDRYLPAEAAFFRDVVAGVVRDQ 76 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 RID ++D L L R L+ +LR ++ + DV VV V+ A Sbjct: 77 VRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEYVDVAHAFV-E 135 Query: 118 RHFAKLVNSILRRVSREK 135 + A +VN++L +++R Sbjct: 136 KDEAGMVNAVLDQIARRF 153 >gi|168024016|ref|XP_001764533.1| predicted protein [Physcomitrella patens subsp. patens] gi|162684397|gb|EDQ70800.1| predicted protein [Physcomitrella patens subsp. patens] Length = 399 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 21/144 (14%) Query: 307 FDAVLVDAPCSSTGTIRR---------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 +D VLVDA C+ G++R + + I Q +LL G + P Sbjct: 257 YDKVLVDAECTHDGSLRHIVKYNEWGWDTFERRFLNEERIASITSLQLRLLSNGFRLLNP 316 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CS + +E VV++ L S + W P Sbjct: 317 GGTLVYSTCSFTRDQNEGVVERFLASHDDAELQEVEPARQWPCRPGG-----------LP 365 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 L + D V+S G F L +L Sbjct: 366 HTL-RFDPVTSHTSGLFIAKLTKL 388 >gi|320536010|ref|ZP_08036071.1| NOL1/NOP2/sun family protein [Treponema phagedenis F0421] gi|320147135|gb|EFW38690.1| NOL1/NOP2/sun family protein [Treponema phagedenis F0421] Length = 267 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 98/268 (36%), Gaps = 26/268 (9%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E + L L E + I G + + D ++ + + L Sbjct: 12 EAYYRDLFGARWEPLRKALLEESKQIAFSDGLRKP--YYLDFASVQAARALPYSASGHCL 69 Query: 247 DLCAAPGGKT----AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------AEDIIEM 296 D+CAAPGGKT ++ A + A ++S R +L+ + + Sbjct: 70 DMCAAPGGKTLVLLRDVLGKDALLHANELSLARRRRLQEVIKTHLPPEENARVQISGFDA 129 Query: 297 DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + ++ +L+DAPCSS + R L + + Q L+ +K Sbjct: 130 ARMPRFKRNAYERILLDAPCSSERHLLRDQKYLTQWTESRVKSLSRRQWALISAAFLLLK 189 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 P G +V+S C+L Q+++ ++ K+++ V + ++ + I+ Sbjct: 190 PDGFLVYSTCALAPQENDMIIDKLIKKYGSEVIVEKISQDKLCEPT-------QFGIQYL 242 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLIQP 444 PD E + + +++ +P Sbjct: 243 PDTAEGAGPI-------YIARIKKSAKP 263 >gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL F6-596] gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL F6-596] gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL N1-067] gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL S4-171] Length = 128 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLR+SV +I YL DV + ++ ++E AK + Sbjct: 52 AEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|325971009|ref|YP_004247200.1| Fmu (Sun) domain protein [Spirochaeta sp. Buddy] gi|324026247|gb|ADY13006.1| Fmu (Sun) domain protein [Spirochaeta sp. Buddy] Length = 262 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 11/233 (4%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E++ +L + L + I G + + D ++ I +L G + SVL Sbjct: 15 ESYYAQLYQGRWESLKQALLLERKPIAFEEGLTQP--YYLDEASVIAAKLLGVQDGDSVL 72 Query: 247 DLCAAPGGKTAQLI---VSGAKVTALDVSKRRLEKLRCNLDRLH----LYAEDIIEMDAF 299 D+CAAPGGK+ + + + A D S R +L+ L + DA Sbjct: 73 DMCAAPGGKSLVMAAALKTQGSLVANDRSATRRGRLKQVLKEHLPEELFTRIMVTGHDAT 132 Query: 300 DYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + +D +L+DAPCSS + P L A Q +L + VK Sbjct: 133 RWSLYEQNKYDRILLDAPCSSERHVLSDPKALAIWSPSRPKHLAIQQFAMLASALEAVKV 192 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 GG +++S CS++ ++E V+ K+ L L+ +S + + Sbjct: 193 GGYILYSTCSINPMENEMVIDKLFDKREGRFTLEKLDPPSSESCRHGSIILSD 245 >gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5] Length = 140 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + L + E + D ++ +R Sbjct: 1 MKPAARRKARELAVQAVYSWQMSKNPLDQV---ELSIVTSNNMQDVDTEYFLELLRAVVR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +DA + L +LR++ +++ +DV V++ A+E AK Sbjct: 58 KTAELDAKIKPYLGRLPEELDPVENAILRLATYELVERIDVPYKVVINEAIELAKSF-GA 116 Query: 118 RHFAKLVNSILRR 130 K +N +L + Sbjct: 117 EESHKFINGVLDK 129 >gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp. SB155-2] gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp. SB155-2] Length = 139 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRK----RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M + AR LL + +L+ + + + A+ T Sbjct: 1 MATRHQAREAVIGLLYAYDLGNPEIKKFAEDILEEKKIRNKQ-------REFALALFKGT 53 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 + L ID ++ L + R + + +LR+ V ++ Y D+ V++ AVE AK+ Sbjct: 54 VEHLDTIDEMIKKHLESWDMERVGHIERAILRLGVYELFYTDLDPAIVINEAVELAKK-L 112 Query: 116 ENRHFAKLVNSILR 129 K +N +L Sbjct: 113 GTDQSPKFINGVLD 126 >gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL S4-120] gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL S4-120] Length = 128 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLRVSV +I YL DV + ++ ++E AK + Sbjct: 52 AEIDAIIEPNLDNWRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia cenocepacia AU 1054] gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia cenocepacia HI2424] gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia cenocepacia MC0-3] gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia cenocepacia J2315] gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184] gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054] gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424] gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184] gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3] gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia cenocepacia J2315] Length = 145 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAPSGEIDAQLRGALGY---DKADKELLEAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + L L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLVEALAPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|223994053|ref|XP_002286710.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220978025|gb|EED96351.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 517 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 19/184 (10%) Query: 244 SVLDLCAAPGGKTAQ------LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMD 297 VLDLCA+PG KT Q +V A DV RL+ LR L R L E + Sbjct: 273 KVLDLCASPGSKTMQALEIVASSAKKGRVIANDVHSGRLDSLREALGRSGLEDEMTARVT 332 Query: 298 AFDYC--------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 +Y KLFDA++ D PCS GTIR+ +L + Q K+L+ Sbjct: 333 YTNYDASVFPLPKSGKLFDAIICDVPCSGDGTIRKDKHILPMWTPHTGNELHSLQAKILV 392 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNSAYWKSIDMA 404 + + VK G +V +S CSL+ + E VV L + + +L+ Sbjct: 393 RALELVKVGVVVCYSTCSLNPVEDEAVVASALTTLKTKQTSAEFQLMEWPEGLLPGFVRR 452 Query: 405 MALS 408 ++ Sbjct: 453 PGIT 456 >gi|167520882|ref|XP_001744780.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777111|gb|EDQ90729.1| predicted protein [Monosiga brevicollis MX1] Length = 305 Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 14/180 (7%) Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVSKRRL 276 E +Q+ + + + + VLD+CAAPGGKT+ + V AL+ S +R Sbjct: 91 EPNAILQNLPSCVAARALAPEPGMRVLDMCAAPGGKTSHISLLLRGTGTVVALERSPKRA 150 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----------FDAVLVDAPCSSTGTIRRHP 326 +L+ + L + ++ +MDA FDAVL+DAPCS G R Sbjct: 151 AQLKEWVASLGCHNVEVHQMDATKCLEGSKGKNSKFPLASFDAVLLDAPCSGLGQRPRVR 210 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 R ++ A +QRKLL ++ ++PGG +VFS CSL ++E V L++ P Sbjct: 211 VDCPLR-VAELEDYASYQRKLLQVAVAALRPGGRLVFSTCSLFAGENEANVAWALKAMPE 269 >gi|239618307|ref|YP_002941629.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1] gi|239507138|gb|ACR80625.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1] Length = 336 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 21/230 (9%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R + L+ + + + A LS + +V TLR +ID + Sbjct: 4 PRQKALETLAFFDQNGY-----IPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYI 58 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 L+ L + + LR+ V Q+ Y+D V ++A + +VE K + F KLVN Sbjct: 59 LNQFLKKP-EKLPAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKA----KSFKKLVN 113 Query: 126 SILRRVSREKIELLQRIAG-ISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF 184 ++LR++S+ + L ++ P+W + E E + + + L V Sbjct: 114 AVLRKISKLETPLPEQPIWLKYSHPKWLVDYWEE---IEWINPLEELLSYNQQPPLQVYS 170 Query: 185 DIETWAHKLNAVMLPT------GGIRLKELPESIVSLPGFAEGVWWVQDA 228 + H L+ I + E E I SL E + V + Sbjct: 171 IPKGEYHLLDEKGYIYDKSDFSDCIIVLEKGEPISSLKRIDELEYIVNEY 220 >gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1] gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5] gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5] gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1] Length = 133 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL +L+ R + Q ++ TL L Sbjct: 1 MATRSQVREAVVGLLYAYESGN---EAVLEKASDFLNQRKIKNAQQQFALELLKGTLDRL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D +L +L + R + +LR+ ++LY V++ A+E AK+ Sbjct: 58 ENLDQILQPLLKDWPIKRIGSMERAILRLGAYEVLYTTTKPPIVINEAIELAKQY-GEDQ 116 Query: 120 FAKLVNSILR 129 KL+N+IL Sbjct: 117 APKLINAILD 126 >gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR] gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR] Length = 142 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 6/138 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + +L + + + + + + + Q R +V TLR Sbjct: 2 SRRKAREAALQVLFQIEMAGVEEEKAYEYIFSE---FNIGENAQKFCRELVQGTLRNRAY 58 Query: 63 IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID ++ V L R + ++R+++ ++L+ DV ++ A+E K D Sbjct: 59 IDDIIREVSNEWDLYRMANVDRNIIRMALYEMLFREDVPKNVAINEAIELGK-DFSTADS 117 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL V++ + Sbjct: 118 GKFINGILGYVAKNMEQF 135 >gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola AmH] gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola AmH] Length = 136 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +AR L D D + + ++ + Sbjct: 1 MATITHAREAVIQTLYAQEMGNDQAIEQFDEILKDKKVKGSKAE---FAKKLLKGVSEHI 57 Query: 61 PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID ++ + ++ R +Q+LRV + +ILY D V+D AV+ AK E++ Sbjct: 58 DKIDEIIKNHLIDWDFERLDKVDKQILRVGIYEILYTDTPYQIVIDEAVKIAKNFSEDK- 116 Query: 120 FAKLVNSILRRVSREKIEL 138 +N IL RV++EK+ Sbjct: 117 AKSFINGILDRVAKEKMSN 135 >gi|281344811|gb|EFB20395.1| hypothetical protein PANDA_012666 [Ailuropoda melanoleuca] Length = 156 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 14/115 (12%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A FQ++ L ++F ++ +V+S CSL ++++E+VVQ L+ +P L Sbjct: 15 SQARLQALAGFQQRALRHALTFPSLQ---RLVYSTCSLCQEENEDVVQDALQQNPGTFRL 71 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 P+ + W + E +R +P+ GFF L R+ P+ Sbjct: 72 APVLPS-WPHRGLGTFPGAEHCLRASPETTL--------TGGFFVAVLERVEVPR 117 >gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae pv. pisi str. 1704B] gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 165 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L SL + D+ F + D +++ Sbjct: 25 AKRREARQMATQALYQWHMAGHSLNEIEAQFRVDNDFSNV---DGTYFHELLHGVATNKT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces pristinaespiralis ATCC 25486] gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces pristinaespiralis ATCC 25486] Length = 142 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ ++ +L + +V Sbjct: 1 MAARNKARKRAFQILFEADQRGATVHTVLADWVRHARTDERQPPVAEYTMDLVEGYAEHA 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + ++ R + +LR+ ++++ D D V+D AV+ AK + Sbjct: 61 DRIDELIATYAVGWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQLAKEFSTDE 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi HTCC2506] gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi HTCC2506] Length = 163 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 9/137 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLP 61 ARL + L + L + + D R IV+ +R Sbjct: 18 ARLAAVQALYQMDIGGTPLVETVAEYETHRMGHEIDGETYRVADAAWFRDIVSGVVRRQK 77 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENR 118 ID ++ L L R +L+ +LR V +I DV +V V+ AK E Sbjct: 78 AIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVPVAVIVSEYVDVAKAFFEEE 137 Query: 119 HFAKLVNSILRRVSREK 135 KLVN++L RV+RE Sbjct: 138 E-PKLVNALLDRVAREM 153 >gi|298491267|ref|YP_003721444.1| Fmu (Sun) domain-containing protein ['Nostoc azollae' 0708] gi|298233185|gb|ADI64321.1| Fmu (Sun) domain protein ['Nostoc azollae' 0708] Length = 321 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 11/230 (4%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPG 253 + + E P +G ++ D S+ + + D+CAAPG Sbjct: 57 TPWQPKFVDRLHIGEKPGKHPLHQQGHFYCLDFSSVFAASILLTINQPVPLLFDMCAAPG 116 Query: 254 GKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--KLFDA 309 GK+ + + +V +RL L NL R + ++ D+ + + + Sbjct: 117 GKSIFAWKALKPDLLISNEVIAKRLGMLISNLKRCQIQPTGVVNRDSSIFAQMLLQTSNL 176 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 V+VDAPC+ + + I KSA Q++++ V P G + + C+ Sbjct: 177 VVVDAPCTGQSLLAKGEKAPGCFHHTSINKSANRQKRIIANSTQLVAPQGYLAYMTCTYS 236 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +++E+V + +L P + + L+ R+ P Sbjct: 237 PEENEQVCEWLLEKFPQFQAVE-----VSHLLSYQSHLTTIPCYRMFPQD 281 >gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C] gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C] Length = 143 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + NAR + +L ++ + + +L S +V + Sbjct: 1 MAARSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVNAFTMDLVEGYADKV 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + L R + +LR+ +++++D D +D AV+ AK + Sbjct: 61 KRIDDLIVTYAVDWELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQLAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37] gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37] Length = 145 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + + ++S +++ D + LS+ D + ++ + Sbjct: 3 MKPAERRRARQSAVQAIYQWQITKLSAGQIIEQFSTD---QDLSKTDVPYFKELLTGVIH 59 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 + +D L L + + +LR+++ ++ D+ V++ A+E AK + Sbjct: 60 RVDFLDEKLSPYLSRKIEDVDMVDKAVLRLAMFELTQRTDIPHKVVLNEAIELAKDFATD 119 Query: 118 RHFA 121 + Sbjct: 120 ESYK 123 >gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae pv. glycinea str. B076] Length = 165 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNV---DGAYFRELLHGVATNKT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALSPCLDLTIEELDLVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141 Query: 121 A 121 Sbjct: 142 K 142 >gi|146096798|ref|XP_001467934.1| hypothetical protein [Leishmania infantum JPCM5] gi|134072300|emb|CAM71006.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 414 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 99/257 (38%), Gaps = 28/257 (10%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274 + F +++ D +++ V+ +VLD+CAAPGGK+ + + AL ++ Sbjct: 144 IDAFGIKAYYLLDYASAHVVEQLQVGAFDTVLDMCAAPGGKSVAVAQFLSPDGALTCNEA 203 Query: 275 RLEKLRCNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRR 324 R ++ L + + DA + F VLVDAPCSS Sbjct: 204 RADRCARLRRNLQEHVPVNYVPWRTTQRDAQTWYDPGAFSRVLVDAPCSSERHLLQQSGG 263 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P L + + A QR LL + I + GG +V+S CS+ +++ VV +VL+ + Sbjct: 264 SPLSLREWSEETTAQLAALQRMLLQRAIETCRVGGRIVYSTCSISPLENDGVVGEVLQRT 323 Query: 385 PIPVELVPLNS-------AYWKSIDMAMALSPEGWIRITPD----------MLEKIDGVS 427 V+++ +S A K+ A G P + + Sbjct: 324 RCEVKVIKTSSAAAAALVAPPKTATDASESDASGAEACAPHTPTVLGEATAYGRLLLPDT 383 Query: 428 SGMDG-FFAVALRRLIQ 443 G F L + + Sbjct: 384 CHGWGPMFFCVLEKTAE 400 >gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745] gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745] Length = 140 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 5/119 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR ++ +L + + +L D L Q + V +++ + L +I Sbjct: 7 RHQARTLALQILYEADVAQHPASDVLARYTSD---LSLPQPVRRYVERLISGVMEDLEKI 63 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 DA + + + + + +LR+++ ++ DV A ++ AVE AKR + Sbjct: 64 DAEIGAAAPAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINEAVELAKRFGGDNSS 122 >gi|156843043|ref|XP_001644591.1| hypothetical protein Kpol_1003p38 [Vanderwaltozyma polyspora DSM 70294] gi|156115237|gb|EDO16733.1| hypothetical protein Kpol_1003p38 [Vanderwaltozyma polyspora DSM 70294] Length = 496 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 102/354 (28%), Gaps = 75/354 (21%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 W + + + I + + DI + Sbjct: 154 RWIRINPIRAQYDKGLEPIMNELNKKFPTRVNHWSDI---VPGTIYHDDYIPNLFGVHTK 210 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---------LI 260 + I S + G +QD ++ P + N V+D CAAPG KT Sbjct: 211 DKITSHELYKTGKVIIQDRASCFPAHILNPGKNDIVIDACAAPGNKTTHTASYILGGPKK 270 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFD---AVLVDAPC 316 ++ A + R + L+ + + D + F +VD C Sbjct: 271 DQTTQIYAFEKDPERAKILQHMIKVAGCSNTIQVNVGDFTKIATPEKFRNVTGFIVDPSC 330 Query: 317 SSTGTIRRHPDVLWTRDTDDIV--------------------------------KSACFQ 344 S +G R + + K A FQ Sbjct: 331 SGSGIFGRKYVDSINKKKQESSGDNGNQDDEDAVPDEQEEEFDLKRDDLKTRLSKLASFQ 390 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV---------ELVPLNS 395 +++ +SF K +V+S CS+ +++E VV +L + E++P Sbjct: 391 FQVVKHAMSFPKAK-KIVYSTCSIHAEENEGVVIDLLLDKKVQEWGWKVAPRSEVIPTWP 449 Query: 396 AYWKSIDMAMALSPE---------GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + E G IR+ P G GFFAV R Sbjct: 450 RRGFQAEFSKVFRDEDEKCQELADGCIRVLP--------KEDGGIGFFAVCFER 495 >gi|229585491|ref|YP_002843993.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27] gi|228020541|gb|ACP55948.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.27] Length = 368 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 125/352 (35%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLLIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTD-DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L + I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNGKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|229579902|ref|YP_002838301.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14] gi|229581438|ref|YP_002839837.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51] gi|228010617|gb|ACP46379.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012154|gb|ACP47915.1| Fmu (Sun) domain protein [Sulfolobus islandicus Y.N.15.51] Length = 368 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTGIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L ++ I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|70946870|ref|XP_743106.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56522443|emb|CAH76900.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 767 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 58/245 (23%) Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------- 302 K V A D + +R L L +H + +A + Sbjct: 2 KKLISNNNPTGVVVANDANFKRCCMLFHRLKNIHSNCLIVTNNNAVSFPYLYLKNKIDNS 61 Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 K FD+VL D PCS GT+R+ ++ + + Q +L + I VK GG V Sbjct: 62 FEKIYFDSVLCDVPCSGDGTLRKDRNIWINWNPVNAYNLFQLQVNILKRSIELVKEGGYV 121 Query: 362 VFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSP------EGWI 413 ++S CSL+ ++E V+ +V S+ ++L+ + K ++ L+ + W Sbjct: 122 IYSTCSLNPIENEAVICEVFNMLSNSESLKLINFENELVKKLNYREGLTEWKLLIDDKWF 181 Query: 414 RIT-----------PDML---------------------------EKIDGVSSGMDGFFA 435 P+ ++ GFF Sbjct: 182 NTYDEFIDYLKDIQPEKFKKVYEKIKNGMFTPNKEFMDKINLKYVKRFFPHHYNAGGFFI 241 Query: 436 VALRR 440 + + Sbjct: 242 ALIEK 246 >gi|227828262|ref|YP_002830042.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25] gi|227460058|gb|ACP38744.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.14.25] Length = 368 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L ++ I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DIAEMPFSNYQSGYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia thailandensis MSMB43] Length = 145 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + + G + + D+ L+ I++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor [Listeria welshimeri serovar 6b str. SLCC5334] Length = 128 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +SL + D + + +V + Sbjct: 1 MK-RREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEK--------LVEGVMANK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA+++ L + + R LLR+SV +I YL DV + ++ ++E AK + Sbjct: 52 AEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIAK-IYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia pseudomallei K96243] gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei ATCC 23344] gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8 horse 4] gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia thailandensis E264] gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei SAVP1] gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei NCTC 10229] gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia pseudomallei 668] gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei NCTC 10247] gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia pseudomallei 1106a] gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia pseudomallei 305] gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei PRL-20] gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia thailandensis TXDOH] gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia thailandensis Bt4] gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia pseudomallei 14] gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia pseudomallei 91] gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia pseudomallei 9] gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia pseudomallei B7210] gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia pseudomallei 7894] gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia pseudomallei NCTC 13177] gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia pseudomallei 112] gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia pseudomallei BCC215] gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia pseudomallei 576] gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pakistan 9] gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia pseudomallei MSHR346] gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106b] gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC 10399] gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pasteur 52237] gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia pseudomallei S13] gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH] gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU] gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1710a] gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia pseudomallei 406e] gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei 2002721280] gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia thailandensis E264] gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia pseudomallei K96243] gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344] gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia thailandensis E264] gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei SAVP1] gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229] gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia pseudomallei 668] gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106a] gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC 10247] gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia pseudomallei 305] gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH] gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU] gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei 2002721280] gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia pseudomallei 406e] gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pasteur 52237] gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC 10399] gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia pseudomallei S13] gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia pseudomallei 576] gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia pseudomallei Pakistan 9] gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia pseudomallei MSHR346] gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8 horse 4] gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1106b] gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei PRL-20] gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia pseudomallei 1710a] Length = 145 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + + G + + D+ L+ I++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira defluvii] gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira defluvii] gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira defluvii] Length = 157 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S AR + +L + L D L ++ +V Sbjct: 1 MASRHQARERAVQILFQYDIHGQAGPWLDDFWIQYPLAEEL----RVFAERLVAGVRANK 56 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +DA++ + + R + +LR+ ++L+ +V ++ A+E AK + Sbjct: 57 KELDALIGTYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIELAKSF-GDE 115 Query: 119 HFAKLVNSILRR 130 +K VN IL + Sbjct: 116 EASKFVNGILDK 127 >gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1] gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1] Length = 143 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L S +V ++ Sbjct: 1 MAARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYA 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + + R + +LR+ +++++D D V+D AV+ AK Sbjct: 61 DRIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQLAKEF-STD 119 Query: 119 HFAKLVNSILRRVSR 133 VN +L R Sbjct: 120 DSPSFVNGLLARFKD 134 >gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas palustris HaA2] gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2] Length = 169 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + R +V+ +R Sbjct: 25 AARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEGDQYLPAEAAFFRDVVSGVVRDQ 84 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++D ++D L L R L+ ++R ++ + D+ VV V+ A Sbjct: 85 KKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFV-E 143 Query: 118 RHFAKLVNSILRRVSREK 135 + +VN++L +++R+ Sbjct: 144 KDETGMVNAVLDQIARQF 161 >gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1] gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1] Length = 144 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + NAR + +L ++ + + +L + +V + Sbjct: 1 MAARSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVSAFTMDLVEGYADKV 60 Query: 61 PRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID ++ + + L R + ++R+ ++++ D D +D AV+ AK + Sbjct: 61 NRIDDLIITYAVDWDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQLAKEFSTDE 120 Query: 119 HFAKLVNSILRRVSR 133 VN +L R Sbjct: 121 S-PSFVNGLLARFKD 134 >gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum SI] gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum SI] Length = 144 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 6/138 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + +L V D F L ++ Q R +V TL L Sbjct: 2 SRRQARERALQILFQVDVGGADPGEAFR--LMDEGFGEL-KKYQEFARLLVGGTLENLAA 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID V+ V ++ R + ++R+++ +I + D+ V+ AVE K Sbjct: 59 IDRVIAGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELGKTYGGEES- 117 Query: 121 AKLVNSILRRVSREKIEL 138 + +N IL R+ E Sbjct: 118 GRFINGILGRIVESPEEY 135 >gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis SH0165] gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B (NusB) [Haemophilus parasuis SH0165] Length = 137 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L + S+ + E + + D R ++ T+ Sbjct: 1 MKVSPRRRARECAVQALYSWYISQNSIEQV---ELAFVTDQDMQGVDMPYFRKLLRGTVE 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 + ID +L L + + +LR++ ++ + LDV ++ A+E AK + Sbjct: 58 NVDVIDDILRPYLDRADNELDPIERTILRLAGYELKFELDVPYKVAINEAIEVAK-VFGS 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 DDSHKYVNGVLDK 129 >gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp. Nb-311A] gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp. Nb-311A] Length = 160 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + + R +V +R Sbjct: 17 AARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEGDRYLPAEAAFFRDVVAGVVRDQ 76 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 RID ++D L L R L+ +LR ++ + D+ VV V+ A EN Sbjct: 77 VRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEYVDVAHAFVEN 136 Query: 118 RHFAKLVNSILRRVSREK 135 A +VN++L +++R Sbjct: 137 EE-AGMVNAVLDQIARRF 153 >gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu] Length = 145 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKDLLDAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + L L + + + +L ++ ++ + + +++ AVE K + Sbjct: 58 EHATLAEALTPCLDRPIDQLSPIERAVLLIATFELTHHVETPYRVIINEAVELTKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 164 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L ++ GDS + D+ ++ L Sbjct: 18 SPRRRAREFALQALYQWQLSGND-EAAIEAHLGDSE--GFDKADREFFAGLLRGVLAQRR 74 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120 + L L +L ++ + +++ +VE AK Sbjct: 75 TLQEQLQAFLDRPFGELSPVEACVLLAGAFELNNHPQTPYGVIINESVELAKGFGGTDG- 133 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 134 HKYVNGVLDK 143 >gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE] gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE] Length = 143 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 3/135 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L S +V ++ Sbjct: 1 MAARNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYA 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + + R + +LR+ +++++D D V+D AV+ AK Sbjct: 61 DRIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQLAKEF-STD 119 Query: 119 HFAKLVNSILRRVSR 133 VN +L R Sbjct: 120 DSPSFVNGLLARFKD 134 >gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM 14863] gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM 14863] Length = 153 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 8/140 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTL 57 S AR ++ L + + A L + R +V Sbjct: 2 SRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAPDRLEEESAEFARRLVRGAW 61 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115 + D ++ + R + +LR++V +I++ DV D V AVE AK Sbjct: 62 QHREESDRLIAQYARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELAKTF- 120 Query: 116 ENRHFAKLVNSILRRVSREK 135 ++ VN IL V R Sbjct: 121 STADSSRFVNGILGSVIRGM 140 >gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3] gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3] Length = 139 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + + + + +++ D F S+ D + ++ + Sbjct: 1 MKPAERRRARQFAVQAVYQWQITKGPVGQIIEQFSVDQDF---SKTDVPYFKELLAGVVS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 + ID L L + +LR+++ ++ Y DV V++ A+E AK + Sbjct: 58 RIETIDEKLSPYLSRKIGDVDMVDIAILRLAMFELSYRTDVPHKVVLNEAIELAKDFATD 117 Query: 118 RHFA 121 + Sbjct: 118 ESYK 121 >gi|168034692|ref|XP_001769846.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678955|gb|EDQ65408.1| predicted protein [Physcomitrella patens subsp. patens] Length = 557 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 10/142 (7%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + FD VL+DAPCS+ G R D + + A +QR+L+ Q + V+P G +V+ Sbjct: 417 PQSFDRVLLDAPCSALGL--RPRLFAGQETLDGLRQHANYQRRLIDQAVQLVRPNGTLVY 474 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLN-----SAYWKSIDMAMALSPEGWIRITPD 418 S C+L+ ++E VV+ VL + P V L P + D+ + W+R + Sbjct: 475 STCTLNPGENEGVVRYVLDTYP-FVSLSPQHPQIGGPGLVGGEDVFDGATHRPWLRKGEE 533 Query: 419 MLEKIDGVSSGMD--GFFAVAL 438 L + D GFF Sbjct: 534 QLVQRFDPVGPRDTIGFFVAKF 555 >gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri ATCC 19865] gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri ATCC 19865] Length = 131 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 5/125 (4%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + ++ + A D ++V L +D L L Sbjct: 1 MQAVYAWQISGGFAKQVISQFAHEQAH---EVADLAYFESLVEGVLTNRAELDTALTPYL 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 58 DRGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDR 116 Query: 131 VSREK 135 S E Sbjct: 117 ASVEW 121 >gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM 8797] gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM 8797] Length = 171 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + +L + ++ ++ + + + F Sbjct: 1 MSLRKQARFLVVQMLYQIDLN---PDISINEIREMIEEHGRNKTARTFAWELFTGVMEFK 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + V + +L R + + +LR+ ++L+ D V+D AVE A+ + H Sbjct: 58 QQLDEHIVRVAENWTLKRMAVTDRNILRLGTYELLHTDTPPAVVIDEAVELAREF-GSAH 116 Query: 120 FAKLVNSILRR 130 ++ VN IL + Sbjct: 117 SSQFVNGILDK 127 >gi|282899437|ref|ZP_06307404.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Cylindrospermopsis raciborskii CS-505] gi|281195701|gb|EFA70631.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Cylindrospermopsis raciborskii CS-505] Length = 315 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 92/277 (33%), Gaps = 17/277 (6%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP--E 210 RL + +E + P + + + L E Sbjct: 12 AHRLFDNPDEEAKFIAALVHPQPFSPSILWCQNPPETPPFTTETPTSWQPKFVDRLQVGE 71 Query: 211 SIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPGGKTAQLIV--SGAKV 266 G ++ D S+ + VLD+CAAPGGK+ + Sbjct: 72 RPGQHALHQAGAFYCLDFSSIFAASVLLTIEQPLTLVLDVCAAPGGKSIFAWKALQPDLI 131 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA--VLVDAPCSSTGTIRR 324 + +V ++RL L NL R + ++ D V+VDAPCS + + Sbjct: 132 ISNEVIRKRLGMLISNLKRCQIKPSYVLNKDTSVLAQMLKQSMSLVIVDAPCSGQSLLAK 191 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 I K+A Q++++ V P G +V+ C+ +++E+V L Sbjct: 192 REKAPGCFHQTVINKNANRQKRIIANSAGIVAPQGYLVYMTCTYSLEENEQVCTWFLERF 251 Query: 385 PIP--VELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 P VE+ PL+ + R+ P Sbjct: 252 PQFKPVEVSPLSPYRSHLTTIP-------CYRMFPQK 281 >gi|238620455|ref|YP_002915281.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4] gi|238381525|gb|ACR42613.1| Fmu (Sun) domain protein [Sulfolobus islandicus M.16.4] Length = 368 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 64/352 (18%), Positives = 126/352 (35%), Gaps = 35/352 (9%) Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLEN 158 +L E +KR + + + + + + P W +E+L Sbjct: 35 PRKIESNLLYEYSKRMLLSYYALPQSKRSFKVRYWLENKE----SIEIKFPNWMEEKLST 90 Query: 159 FYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI 212 + + + ++E+ + I++K+ P + Sbjct: 91 LLDINALKRKLSERWMWARVNILKTDIDKIYRELESQNIEFEVDKNFYYMIKIKKSPVRL 150 Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTAL 269 SL + + D ++S+ V+ ++DL +APG K + ++ + A+ Sbjct: 151 SSLSIVKDCKLVIHDKASSLVVEALKPEIGEKLVDLSSAPGIKASLYMMLTENRAETFLA 210 Query: 270 DVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 DV +RL + L R + II D+ D +L+DAPCSS+G I P Sbjct: 211 DVDFKRLSREYNLLKRCGVDLRKIHIIYQDSTKNS-VIKSDKILLDAPCSSSGMINNDPS 269 Query: 328 VLWTRDTDD-IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +L ++ I K A Q+ LL + + +V++ CSL ++ E V++ Sbjct: 270 ILLKLSDNEKIKKFAKLQKSLLNESLKIRAN--KLVYAVCSLFPEEGERVIEDY-----Y 322 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + +P ++ + R P + +GFF L Sbjct: 323 DIAEMPFSNYQSSYSLYKVGKRSN---RTFPHI--------DSTEGFFISVL 363 >gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia pseudomallei DM98] Length = 145 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + + G + + D+ L+ I++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLAEAISPSLDRPIEQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella denitrificans OS217] gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217] Length = 133 Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + ++ + + + + D R ++ Sbjct: 1 MKPSERRKARRLAVQAIYSWQLSKNNVADVEHEFITE---QNIDGVDVAYFRELLAGVAS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID +L L + ++R++ ++ + DV ++ A+E AK Sbjct: 58 KHEQIDDLLRPHLDRKFEDVSPVEKAIVRLAGYELTFRKDVPYKVAINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 DDSHKFVNGLLDK 129 >gi|71659529|ref|XP_821486.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70886867|gb|EAN99635.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 714 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 91/288 (31%), Gaps = 69/288 (23%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK----------------------TAQLI 260 Q+ + +P L LD+CA+PG K Sbjct: 157 ISRQEEVSMLPPFLLDIQPTDKCLDMCASPGSKTAQILVALGRHKVVPVDSDASPFTFDY 216 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHL---------------YAEDIIEMDAFDYCPKK 305 S V A ++ +R L + RL L + Sbjct: 217 ESEGLVMANEIDTKRANMLVHQVKRLRLLFPFALFTNHDARYFPNVKCAASLVGNADEDL 276 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD +L D CS GTIR+ P + + + Q ++ L+ + GG VV+S Sbjct: 277 RFDKILCDVVCSGDGTIRKAPHIFKIWSPREAIILQKTQIQIALRACHLSRVGGRVVYST 336 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS---------------IDMAMALSPE 410 CS++ ++E VV +++ + ++LV S ++ +A S E Sbjct: 337 CSMNPIENEAVVAQIVHRTRGAMKLVDARSLLPGLQCAPGLQRWVVTNFKGELVVAPSDE 396 Query: 411 GWIRITPD-----------------MLEKIDGVSSGMDGFFAVALRRL 441 + P + ++ G FF L ++ Sbjct: 397 AHEALFPPNTPGAYASAAVNELDLRLCMRLYPSHCGGGAFFIAVLDKV 444 >gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2] gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2] Length = 166 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + + + + R +V+ +R Sbjct: 22 AARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDEYLPAEAAFFRDVVSGVVRDQ 81 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +ID +LD L L R + L+ LR ++ + DV V+ V+ A Sbjct: 82 GKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYVDVAHAFV-E 140 Query: 118 RHFAKLVNSILRRVSREK 135 A +VN++L +++R+ Sbjct: 141 ADEAGMVNAVLDQIARQF 158 >gi|42522579|ref|NP_967959.1| hypothetical protein Bd1019 [Bdellovibrio bacteriovorus HD100] gi|39575111|emb|CAE78952.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 296 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 32/260 (12%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK 255 + + + + + ++ D ++ + + +LD+CAAPGGK Sbjct: 57 ELPGCHWLTPAHGCQPERNSDELLD--IYIMDPASVMVARALDVQPGDRLLDMCAAPGGK 114 Query: 256 ---TAQLIVSGAKVTALDVSKRRLEK----LRCNLDRLHLYAEDIIEMDAFDYCPKKL-- 306 + ++ D+S R E+ ++ + R + D + K+ Sbjct: 115 SLVMIESFGGEGEIFCNDLSPERRERLKKVIQQYVPREVRNRVWVTGKDGVQFGLKEPGS 174 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 FD VL+DAPCS I + A Q LL VK GG +V+S C Sbjct: 175 FDRVLLDAPCSGERHILENQAAQDEWSPRRTEHLAARQYSLLAAAFLAVKVGGRIVYSTC 234 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ ++++VV+K + + + + + G + PD Sbjct: 235 SISPAENDDVVRK------LLKKKKSAVKLLEAPVGVGGERTELG-VAYMPDQC------ 281 Query: 427 SSGMDGF---FAVALRRLIQ 443 GF + + ++ + Sbjct: 282 -----GFGPLYFAVIEKVEE 296 >gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii NGR234] gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234] Length = 160 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMEIGGTGVLEIVAEFEAHRLGQELDGETYLKADASWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ++D ++ L +L R +++ +LR ++L DV +V VE AK E+ Sbjct: 78 RKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKDVPVAVIVTEYVEIAKAFFED 137 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 138 EE-PKLVNAVLDR 149 >gi|189192789|ref|XP_001932733.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978297|gb|EDU44923.1| tRNA (cytosine-5-)-methyltransferase NCL1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 834 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 79/244 (32%), Gaps = 69/244 (28%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC------------PKKLFDAVLVDA 314 A D +R L + RL+ + + DA + +D +L D Sbjct: 234 IANDSDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSVDGQKKQYLKYDRILADV 293 Query: 315 PCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE 374 PCS GT R++P+V D + Q ++L +G+ +K GG +V+S CSL+ ++E Sbjct: 294 PCSGDGTARKNPNVWQKWTPKDGLGLHGLQLRILFRGLQMLKKGGRLVYSTCSLNPVENE 353 Query: 375 EV-------------VQKV--------LRSSPI--PVELVPLNSAYWKSIDMAMALSPEG 411 V VQ V LR P +++ S A + Sbjct: 354 AVVAAAIEACGGNSKVQLVDCSDHLPNLRRKPGLNAWKVLDTTSTTAGGEKTAHMFTNWE 413 Query: 412 WIR------------------ITPDMLE----------------KIDGVSSGMDGFFAVA 437 + ITP ++ GFF Sbjct: 414 AFQKAKAKYEIEEPERQFSQKITPGCFPPVPKSPEERIPLERCIRVYPHLQDTGGFFIAI 473 Query: 438 LRRL 441 L +L Sbjct: 474 LEKL 477 >gi|15922756|ref|NP_378425.1| Sun family protein [Sulfolobus tokodaii str. 7] gi|15623547|dbj|BAB67534.1| 342aa long hypothetical sun protein [Sulfolobus tokodaii str. 7] Length = 342 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 127/347 (36%), Gaps = 48/347 (13%) Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 V + E A+R + + + + R+K+ + ++PEWF+ L+ Y Sbjct: 30 RSVKDSYELARRLILSYYS------LSGKSYRKKVREFLQKGVRIVLPEWFERELDGIYD 83 Query: 162 KERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTG-----GIRLKELPESIVSL 215 E++ ++I + +K D + L + K + I S Sbjct: 84 IEKLKD--SFLDRVIWIRVNTLKADEDKVIKSLENEGIILEKDKDIPYAYKVVKGDIRST 141 Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTALDVS 272 F E +QD ++ ++ + D+ +APG K + ++ + +++ DV Sbjct: 142 TEFKEFKVIIQDKASMAVIEALKPEKGELIFDMASAPGIKASLIMALTDNQSELVVSDVD 201 Query: 273 KRRLEKLRCNLDRLHL--YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 + RL K L + + II D+ D VL+DAPCSSTG I P VL Sbjct: 202 RERLHKEIKFLHDVGVNMDKVHIIHQDSTS-SSVIKADKVLLDAPCSSTGMISNEPTVLL 260 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + + + Q+ LL + +S V+++ CSL Q+ E +V++ P+ Sbjct: 261 KLTKQRVNELSELQKNLLNKALSI---SSYVIYATCSLLPQEGEYIVKEFNAKPPLSFAS 317 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + +GFF Sbjct: 318 SN-------------------------SLGNRFIPYLHQSEGFFISK 339 >gi|261416658|ref|YP_003250341.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373114|gb|ACX75859.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326771|gb|ADL25972.1| NOL1/NOP2/sun family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 253 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 23/227 (10%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLR 280 + D ++ + + VLD+CAAPGGK+ + + D S R +L+ Sbjct: 40 YFLDEASVFAAKALAVEPGMDVLDMCAAPGGKSLVIASMLKGEGSLQCNDRSPDRRLRLQ 99 Query: 281 C------NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 + + F K+ +D +L+DAPCSS + P L Sbjct: 100 HVLENSLPESWRSIINVSGYDGVKFGMHKKECYDRILLDAPCSSDRHVLNSPSHLEVWSV 159 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 + + + Q LL + ++PGG +++ C+L +++ VV K+L+ + + Sbjct: 160 KRVKRLSVEQGSLLASAVDALRPGGELIYGTCALSPLENDAVVAKILKKRKM------ME 213 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + + G + I PD + + +R++ Sbjct: 214 FVRIEDLPEGADRTELG-VHILPDKAHGCGPI-------YCAKMRKV 252 >gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus fusiformis ZC1] gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus fusiformis ZC1] Length = 127 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 12/136 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + +L + +++ + G IVN T L Sbjct: 1 MK-RHEAREKALQVLFQLDNTDLTVEEAMGHIKGQPTN--------AFYEKIVNGTAEHL 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA L+ L SL R + +LR++V ++LY+ + V++ A+E K + Sbjct: 52 EEIDATLEQHLEKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCKTF-GDD 110 Query: 119 HFAKLVNSILRRVSRE 134 +K VN +L + + + Sbjct: 111 SSSKFVNGVLSKFTEQ 126 >gi|50729750|ref|XP_416643.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 362 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 61/350 (17%), Positives = 123/350 (35%), Gaps = 32/350 (9%) Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISP 175 R A L ++ K++ + + + L + + R + C Sbjct: 21 RPRRGAAQTPEQLENKTKGKLQKQTCQVVLDHFEKQYSTELGDAWSSVREVLTYPLCWQH 80 Query: 176 LYIDLTVKFDIETWAHKLNAVMLPTGG-----IRLKELPESIVSLP---------GFAEG 221 + L L A + L + P Sbjct: 81 AVL-LNKFSHTADLEDTLCAQGYHPAFRGTLPYLPRSLKCYVSRTPRRFPSQKHQAGKLK 139 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-----DVSKRRL 276 +++ +A++ +PV + VLDLCAAPGGK+ ++ + ++ R L Sbjct: 140 EYYLLNAASVLPVLALEVKDGEDVLDLCAAPGGKSVAILQCASPGELHCNEYDELRSRWL 199 Query: 277 EKLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TR 332 ++ + L+ I++ + +D VLVDAPCS+ + D+ T Sbjct: 200 KQTMESFIPRPLFNLITVSILDGRQIGELKPEFYDKVLVDAPCSNDRSWLFSSDIQQATL 259 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + + Q +LL I ++PGG +V+S C+L K ++ +V+ VL S + + Sbjct: 260 RLLQRKELSVLQFQLLRSAIKALRPGGSLVYSTCTLSKAENSDVINLVLNSCTNVIPVDI 319 Query: 393 LNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A S + + + + + P+ + L+++ Sbjct: 320 SEIAQAVSQQFTFHSDTQQHELLVLPEKGRAWGP-------MYIAKLKKV 362 >gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera] Length = 324 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 36/240 (15%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL--------------VRAIV 53 R VS+ L + LL+ S + ++ L V IV Sbjct: 60 RAVSAVRLMRIELGGAFAD-LLNERGKGSGDNEMGYVERTLGFRTRDLDDRDLRLVTDIV 118 Query: 54 NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 ++R+ +D ++ + + + L Q+LR+ +I+ LD+ YAVVD V A Sbjct: 119 GGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVVDENVRLA 178 Query: 112 KRDKENRHFAKLVNSILR--------------RVSREKIELLQRIAGISIIPEWFKERLE 157 K A +VN+ILR ++ + + +A + P W R Sbjct: 179 KVALRP-GAANMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVWMVRRWT 237 Query: 158 NFYGKERVLAISDACISPLYIDLTVK----FDIETWAHKLNAVMLPTGGIRLKELPESIV 213 + G+E + + S L F +L + +P + I Sbjct: 238 KYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLDNFVRIR 297 >gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis 29755] gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis 29755] Length = 137 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L + S+ + E + + D R ++ T+ Sbjct: 1 MKVSPRRRARECAVQALYSWYISQNSIEQV---ELAFVTDQDMQGVDMPYFRKLLRGTVE 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 + ID +L L + + +LR++ ++ + LDV ++ A+E AK + Sbjct: 58 NVDVIDDILRPYLDRADNELDPIERTILRLASYELKFELDVPYKVAINEAIEVAK-VFGS 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 DDSHKYVNGVLDK 129 >gi|67622853|ref|XP_667832.1| FLJ20303 protein [Cryptosporidium hominis TU502] gi|54659000|gb|EAL37602.1| FLJ20303 protein [Cryptosporidium hominis] Length = 744 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------------VSGAKVTALD 270 Q+A + +PV N VLDLC+APG KT+Q+I V A D Sbjct: 127 IMRQEAVSMLPVLFLDVKPNHYVLDLCSAPGSKTSQIIEILQSEQAVTGEYPKGFVIAND 186 Query: 271 VSKRRLEKLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 + RR L + H + + K FD +L D PCS Sbjct: 187 LDTRRAHMLIHHTRHLNSPSLIVTTHSADHFPDIYLSNPSSESLKEKFYFDRILCDVPCS 246 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEV 376 S GT+R++P++ + QR +LL+ +S +KP G++V+S CS + ++E V Sbjct: 247 SDGTLRKNPNLFAKWSISFSLGLHRLQRNILLRALSILKPKEGLLVYSTCSFNPLENEAV 306 Query: 377 VQKV---LRSSPIPVELVP 392 V V L + I VE+V Sbjct: 307 VSSVISSLANRGIQVEIVD 325 >gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7] gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7] Length = 149 Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R V+ L +L D L + D R ++ + Sbjct: 12 ARRQSRRVAMQALYQWQLTGYHPKDILLQYREDP---ELEKADADYFRELLLGVTEQVDE 68 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D +L + S+ + +LR++ ++ +D+ V++ AVE K+ Sbjct: 69 LDELLAPQMDRSVAELDPVERAILRLATFELKQRIDIPYRVVINEAVELTKKFGATD-AH 127 Query: 122 KLVNSILRR 130 K VN +L + Sbjct: 128 KFVNGVLDK 136 >gi|94499928|ref|ZP_01306464.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Oceanobacter sp. RED65] gi|94428129|gb|EAT13103.1| 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Oceanobacter sp. RED65] Length = 184 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 10/181 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ +L V+ ++ SL LL D L D+ +++I R Sbjct: 1 MKPLHNVRSIAAVILLGVIDEKKSLNTLLPYHSRD-----LLPEDKAQLQSICFGACRHF 55 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 I+A+ +L LP K Q LL + + Q+ + + ++A + V A + + F Sbjct: 56 FSINALSKMLLDKPLPEKARLTQSLLWIGLYQLAHSHMPEHAAIHQTV-AACDNLKQTPF 114 Query: 121 AKLVNSILRRVSREKIELLQRIA----GISIIPEWFKERLENFYGKERVLAISDACISPL 176 KL+N+ILRR REK +LL + P+W ++L+ + + +A Sbjct: 115 KKLINAILRRFQREKDQLLNDLKSSDVPHYEHPKWLLKKLKKDWPEHWQSIALNANQQAP 174 Query: 177 Y 177 Sbjct: 175 M 175 >gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614] gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614] Length = 135 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 7/121 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + LD + +V + Sbjct: 1 MSARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTND-----YTATLVRGVVEHQ 55 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L L R + +LR+ V ++LY DV D V A+ + Sbjct: 56 ARIDELLSSYSHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDE 115 Query: 119 H 119 Sbjct: 116 S 116 >gi|323509313|dbj|BAJ77549.1| cgd5_3560 [Cryptosporidium parvum] Length = 362 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------------VSGAKVTALD 270 Q+A + +PV N VLDLC+APG KT+Q+I V A D Sbjct: 127 IMRQEAVSMLPVLFLDVKPNHYVLDLCSAPGSKTSQIIEILQSEQAVTGEYPKGFVIAND 186 Query: 271 VSKRRLEKLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 + RR L + H + + K FD +L D PCS Sbjct: 187 LDTRRAHMLIHHTRHLNSPSLIVTTHSADHFPDIYLSNPSSESLKEKFYFDRILCDVPCS 246 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEV 376 S GT+R++P++ + QR +LL+ +S +KP G++V+S CS + ++E V Sbjct: 247 SDGTLRKNPNLFAKWSISFSLGLHRLQRNILLRALSILKPKEGLLVYSTCSFNPLENEAV 306 Query: 377 VQKV---LRSSPIPVELVP 392 V V L + I VE+V Sbjct: 307 VSSVISSLANRGIHVEIVD 325 >gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans 91-118] gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans 91-118] Length = 162 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D +V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 S+ + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RSVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREK 135 + E Sbjct: 146 AVEW 149 >gi|66358202|ref|XP_626279.1| CNcl1p/MJ0026/YebU-like. SUN family methylase [Cryptosporidium parvum Iowa II] gi|46227283|gb|EAK88233.1| CNcl1p/MJ0026/YebU-like. SUN family methylase [Cryptosporidium parvum Iowa II] Length = 745 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 29/199 (14%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI------------VSGAKVTALD 270 Q+A + +PV N VLDLC+APG KT+Q+I V A D Sbjct: 128 IMRQEAVSMLPVLFLDVKPNHYVLDLCSAPGSKTSQIIEILQSEQAVTGEYPKGFVIAND 187 Query: 271 VSKRRLEKLRCNLDR-------------LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 + RR L + H + + K FD +L D PCS Sbjct: 188 LDTRRAHMLIHHTRHLNSPSLIVTTHSADHFPDIYLSNPSSESLKEKFYFDRILCDVPCS 247 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP-GGIVVFSNCSLDKQDSEEV 376 S GT+R++P++ + QR +LL+ +S +KP G++V+S CS + ++E V Sbjct: 248 SDGTLRKNPNLFAKWSISFSLGLHRLQRNILLRALSILKPKEGLLVYSTCSFNPLENEAV 307 Query: 377 VQKV---LRSSPIPVELVP 392 V V L + I VE+V Sbjct: 308 VSSVISSLANRGIHVEIVD 326 >gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833] gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833] Length = 144 Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 8/132 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + +L + +S +LD ++ +L +V +R RI Sbjct: 12 RTQARQRALDILFEAEARAVSPLQVLDERAKEADPPVLE-----YTVTLVEGVVRHQDRI 66 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ +L R + +LR ++L+ DV + V+ V A + Sbjct: 67 DELISTYAQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENVVISEWVRLA-AELSTDESP 125 Query: 122 KLVNSILRRVSR 133 VN +L R Sbjct: 126 HFVNGLLARFKE 137 >gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905] gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905] Length = 127 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + +L + +++ + G IV T L Sbjct: 1 MK-RHEAREKALQVLFQLDNTDLTVEEAMGHIKGQPTN--------AFYEKIVTGTAEHL 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA L+ L SL R + +LR++V ++LY+ + V++ A+E K + Sbjct: 52 EEIDATLEQHLEKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCKTF-GDD 110 Query: 119 HFAKLVNSILRRVSRE 134 +K VN +L + + + Sbjct: 111 SSSKFVNGVLSKFTEQ 126 >gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383] gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383] Length = 145 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKELLEAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + L L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLVEALTPSLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|312091304|ref|XP_003146932.1| hypothetical protein LOAG_11363 [Loa loa] gi|307757905|gb|EFO17139.1| hypothetical protein LOAG_11363 [Loa loa] Length = 434 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 64/404 (15%), Positives = 136/404 (33%), Gaps = 25/404 (6%) Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVA-QILYLDVADYAVVDLAVE 109 + TLRF ++ +L+ L K + + LL V + I + Sbjct: 39 RLCCETLRFRNCLERILEGKEFHDLLTKLHFDRYLLYVLLYDHIFGQGLNKAKKAYSNAI 98 Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAIS 169 + + + + I K + + S Sbjct: 99 LKRAAYIDEQLETMKDMIEEAKGHVAQLSAVVENPRYARVNTLKWSFDEALQALQDEGWS 158 Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 + + P D K + + + + L + +G +QD + Sbjct: 159 ISSLEPQEDDDWYKIAVSSMLKNQVYIDCHVNELLLFPANADLHQHWMVIDGYLLLQDKA 218 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRL 286 + + + + D+CAAPG KT L + + K+ A+D + R++ L +D+ Sbjct: 219 SCLSSLVLNPKAGTYIFDICAAPGMKTTHLAALVQNEGKIWAIDRASDRVKTLCTMVDKA 278 Query: 287 HLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRRHPDVLW---TRDTDDIVK 339 D L+D PCS +G ++R ++ +T + Sbjct: 279 GAINVSTCCGDFLRTDVTSKRFDKVRYALLDPPCSGSGIVKRMDQLINGEERINTSRLQS 338 Query: 340 SACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS-A 396 + Q LL + +K +V+S CS+ ++++E+V++++L + + + + Sbjct: 339 LSNLQAMLLKHALGLPNLKK---IVYSTCSIYEEENEQVIEEILNDEFLRTQFKLIKAMP 395 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W A + +R P++ +GFF +R Sbjct: 396 EWPHRGRANYSFGDKCLRALPEI--------DLTNGFFVAVFKR 431 >gi|281349376|gb|EFB24960.1| hypothetical protein PANDA_019517 [Ailuropoda melanoleuca] Length = 333 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 107 KKYYLLNAASLLPVLALELRDGERVLDLCAAPGGKSIALLQCAYPGYLHCNEHDSLRLRW 166 Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 LR + + + + E+D + + FD VLVDAPCS+ + Sbjct: 167 LRQTLESFIPQPLVNVIKVSELDGREMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAA 226 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGG++V+S C+L K ++++V+ ++L S + + Sbjct: 227 CRISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVICEILNSYTNIMPVD 286 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 287 IKEMAKTCSQDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 329 >gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331] Length = 143 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L S +V ++ Sbjct: 1 MAARNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVGEFTMELVEGYAQYA 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + + R + +LR+ +++++D D V+D AV+ AK + Sbjct: 61 DRIDDLIVTYAVDWEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQLAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens Pf0-1] gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1] Length = 166 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L R SL + D+ F + D R I++ +F Sbjct: 26 AKRREARQLATQALYQWHMARQSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPQFKT 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 83 EIDNALTPCLDLAIEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGH 142 Query: 121 A 121 Sbjct: 143 K 143 >gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069] gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069] Length = 142 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 49/139 (35%), Gaps = 7/139 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ AR + + L + + + D + + + + L L Sbjct: 9 MRRR--AREYAMQAIYQWQMSDNPLNEIEAQYLTTMNAKKV---DTVYFQELFSGVLTNL 63 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119 ID L L + + ++R+S ++ +DV V++ +E AK Sbjct: 64 DEIDEALAPALEREIEGIDPIERAIIRLSAFELKKRVDVPKKVVINEGIELAKTFGATDG 123 Query: 120 FAKLVNSILRRVSREKIEL 138 K VN +L ++S+ Sbjct: 124 -HKFVNGVLDKISKALRPH 141 >gi|156094750|ref|XP_001613411.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802285|gb|EDL43684.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1116 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 58/245 (23%) Query: 254 GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----------- 302 K V A D + +R L L +H + +A ++ Sbjct: 280 KKLISNSNPTGVVVANDANFKRCCMLFHRLKNIHSNCLVVTNNNAINFPYIYVKDEEGNT 339 Query: 303 -PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 K+ FD+VL D PCS GT+R+ ++ + + Q +L + I K GG + Sbjct: 340 NEKRYFDSVLCDVPCSGDGTLRKDRNIWLNWNPFNAYNLFQMQVSILKRSIELTKEGGNI 399 Query: 362 VFSNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSPEG-------- 411 V+S CSL+ ++E V+ +V + ++L+ + ++ L+ Sbjct: 400 VYSTCSLNPIENEAVICEVFSSLENRNCLKLINFGNELIDKLNFKEGLTEWKVMMDDQWF 459 Query: 412 --------WIR------------------ITPD----------MLEKIDGVSSGMDGFFA 435 +++ TPD +++ GFF Sbjct: 460 DTYEEYCTYLQNKREGKYKKIYDKIQHGMFTPDEEFMKEINLKYVKRFFPHHYNAGGFFI 519 Query: 436 VALRR 440 +++ Sbjct: 520 AVIKK 524 >gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp. sepedonicus] gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp. sepedonicus] Length = 137 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + S+ L +E +A Q R I + Sbjct: 1 MSARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWAYAREIAEGFVEHQ 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID +++ +L R + +LR+ + +IL+ DV D + +V+ A Sbjct: 61 DEIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVDLA-SSLSTD 119 Query: 119 HFAKLVNSILRR 130 A VN +L R Sbjct: 120 ESASFVNGMLAR 131 >gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum STM815] gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815] Length = 145 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G + + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPAGEIDAQLRGAQGY---DKADHEHLDAILHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A L L + + + +L V+ ++ ++D+ V++ AVE AK Sbjct: 58 SEALSADLAPCLDRPIDQLSPVERAVLLVAAYELKNHIDIPYRVVINEAVELAKTFGGAD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|195497866|ref|XP_002096282.1| GE25147 [Drosophila yakuba] gi|194182383|gb|EDW95994.1| GE25147 [Drosophila yakuba] Length = 532 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 22/237 (9%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDV 271 +Q+ + S+ +L +VLD+CAAPG KT ++ + + +++ Sbjct: 300 HELVHSKRLILQNKATSLAAELLAPPMGATVLDMCAAPGMKTLHLCNVMQNKGCIYSVEQ 359 Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPDVL 329 + R + L ++ I DA + D +LVD CS +G R Sbjct: 360 DRVRYKTLCDITEQAGCEIVKPILGDALNLTSDSYEDVEYILVDPSCSGSGMQSRMTVCD 419 Query: 330 WTRDTDDIVKSACFQRKLLLQGI---SFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 +D + K Q K+L + VK + + CSL K+++E+VV++ L+ +P Sbjct: 420 EPKDDSRLYKLQGLQIKILSHAMGSFPNVK---RIAYCTCSLWKEENEQVVERCLQLNPS 476 Query: 387 PVEL---VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L L + + D + + PD S DG F + Sbjct: 477 YKLLSCKKALRNKWHNVGDKDYPNIGKNCLYCLPD--------SDLTDGIFLALFEK 525 >gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia oklahomensis EO147] gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia oklahomensis C6786] Length = 145 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + + G + + D+ L+ I++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKTLLDTILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHAALAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens Pf-5] gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5] Length = 166 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L + SL + D+ F + D R I++ Sbjct: 26 AKRREARQLATQALYQWHMAKHSLNEIEAQFRVDNDFTDI---DGAYFREILHGVPANKN 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 83 EIDTALVPCLDLAIDELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGH 142 Query: 121 A 121 Sbjct: 143 K 143 >gi|301787891|ref|XP_002929361.1| PREDICTED: putative methyltransferase NSUN3-like [Ailuropoda melanoleuca] Length = 337 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 17/230 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 +++ +A++ +PV + VLDLCAAPGGK+ L+ + RL Sbjct: 111 KKYYLLNAASLLPVLALELRDGERVLDLCAAPGGKSIALLQCAYPGYLHCNEHDSLRLRW 170 Query: 279 LRC----NLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 LR + + + + E+D + + FD VLVDAPCS+ + Sbjct: 171 LRQTLESFIPQPLVNVIKVSELDGREMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKAA 230 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 Q +LL I ++PGG++V+S C+L K ++++V+ ++L S + + Sbjct: 231 CRISQRRNLPVLQIELLRSAIKALRPGGLLVYSTCTLSKAENQDVICEILNSYTNIMPVD 290 Query: 392 PLNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + PD + + L++ Sbjct: 291 IKEMAKTCSQDFTFAPTGQECGLLVIPDKGKAWGP-------MYVAKLKK 333 >gi|330922271|ref|XP_003299775.1| hypothetical protein PTT_10834 [Pyrenophora teres f. teres 0-1] gi|311326433|gb|EFQ92133.1| hypothetical protein PTT_10834 [Pyrenophora teres f. teres 0-1] Length = 863 Score = 90.3 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 101/320 (31%), Gaps = 101/320 (31%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------- 266 Q+ + IP + VLD+CAAPG K+AQL Sbjct: 159 ISRQEVVSMIPPHFLDVKPGMVVLDMCAAPGSKSAQLAEMIHGDEEERVQRVANGESVDL 218 Query: 267 ----------------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302 A D +R L + RL+ + + DA + Sbjct: 219 ADDGDYTDDGRSTGLLIANDSDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSVD 278 Query: 303 ----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 +D +L D PCS GT R++P+V D + Q ++L +G+ +K G Sbjct: 279 GQKKQYLKYDRILADVPCSGDGTARKNPNVWQKWTPKDGLGLHGLQLRILFRGLQMLKKG 338 Query: 359 GIVVFSNCSLDKQDSEEV-------------VQKV--------LRSSPI--PVELVPLNS 395 G +V+S CSL+ ++E V VQ V LR P +++ +S Sbjct: 339 GRLVYSTCSLNPVENEAVVAAAIEACGGNSKVQLVDCSDHLPNLRRKPGLNAWKVLDTSS 398 Query: 396 AYWKSIDMAMALSPEGWIR------------------ITPDMLE---------------- 421 A A + + ITP Sbjct: 399 ATAGGEKTAHMFTNWEAFQKAKAKYEVEEPERQFSQKITPGCFPPVPKSPEDRIPLERCI 458 Query: 422 KIDGVSSGMDGFFAVALRRL 441 ++ GFF + +L Sbjct: 459 RVYPHLQDTGGFFIAIIEKL 478 >gi|242002804|ref|XP_002436045.1| williams-beuren syndrome critical region protein, putative [Ixodes scapularis] gi|215499381|gb|EEC08875.1| williams-beuren syndrome critical region protein, putative [Ixodes scapularis] Length = 445 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 20/226 (8%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 A++ + V V+D CAAPG KT + + + K+ A+D + R LR Sbjct: 224 AQAASGMAVVALAPTPGSVVIDACAAPGMKTTYIAALMENTGKILAMDHDQERTLSLRDL 283 Query: 283 LDRLHLYAED-IIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + R + + D P++ DA + S TG+ + RD + Sbjct: 284 VQRAGVSGICKVRTADFLTVDPEQSPYCDAEFILVDPSCTGSGMTNRLEPNPRDAAQNLD 343 Query: 340 SACF----QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 Q LL F K + +S CS+ +++EEVV + LR + +L + Sbjct: 344 RLRKLRAIQAMLLKHATKFPKVR-RIAYSTCSVHAEENEEVVGEALRFTRGRFQLEKVLP 402 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +++ + E +R++P+ GFF R+ Sbjct: 403 -EFENRGLDRYEFGECCVRMSPETTFTR--------GFFLAVFVRV 439 >gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160] gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160] Length = 144 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G + + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGY---DKADHEHLDAILHGVMRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ +LD+ V++ AVE K + Sbjct: 58 SEALSAAIAPCLDRPIDQLSPVERAVLLVAAFELKNHLDIPYRVVINEAVELTKTFGGSD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str. CTCB07] gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str. CTCB07] Length = 144 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + LL ++ISL L +E +A + + R IV+ + Sbjct: 1 MSARTKARKRALDLLFSADVRQISLAHALAVEAERAANEPAREASWLYAREIVDGVIDNQ 60 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID ++ +L R + +LR+ V ++L+ D V D + AVE A Sbjct: 61 EEIDEQIETYAQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVEAAT-VLSTD 119 Query: 119 HFAKLVNSILRRVSRE 134 A VN +L ++++ Sbjct: 120 DSAGFVNGLLAKIAQN 135 >gi|290953006|ref|ZP_06557627.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. holarctica URFT1] gi|295313772|ref|ZP_06804346.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. holarctica URFT1] Length = 130 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 18/136 (13%) Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF-VKPGGIVVFS 364 F+ +++DAPCS+ GTIRR+PD+ R +DI Q K+L + + G ++++ Sbjct: 8 KFNKIILDAPCSALGTIRRNPDIKVLRTPNDIQAIKSLQSKILANLWNNNLTDNGYLLYT 67 Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID 424 CS+ +++++ +++ L + N+A ID+ ++ P + Sbjct: 68 ICSILAEENQQQIKEFLAKN---------NNAKIIEIDILEKYKTSYGYQLLPSQQDG-- 116 Query: 425 GVSSGMDGFFAVALRR 440 DGF+ L++ Sbjct: 117 ------DGFYYCLLKK 126 >gi|302824331|ref|XP_002993809.1| hypothetical protein SELMODRAFT_431844 [Selaginella moellendorffii] gi|300138329|gb|EFJ05101.1| hypothetical protein SELMODRAFT_431844 [Selaginella moellendorffii] Length = 383 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 24/234 (10%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276 +++ DA++ + + VLDLCAAPGGKT ++ + A + S R Sbjct: 137 FDYYLMDAASVLVTEALDLEVGDKVLDLCAAPGGKTLGILQQLDLLQGALVANEPSPTRS 196 Query: 277 EKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 ++L + + + + L+D VLVDAPCSS + P L T Sbjct: 197 KRLSKVISEYVPANLRTSIRVTRRNGIKWMEHDLYDKVLVDAPCSSERHLLHDPKELGTW 256 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 A Q LL + K G +V+S CSL + +++ V+ K L + E++ Sbjct: 257 TPRRTENCAKRQLALLFAALRAAKLYGRIVYSTCSLSQLENDSVISKALEKGKLDFEII- 315 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL-IQPK 445 W + + GWI I PD+ + + + L++L +P+ Sbjct: 316 --QKQWPVGER----TEHGWI-ILPDVSQGWGPI-------YIAVLKKLSTKPE 355 >gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15] gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15] Length = 138 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R ++ LL + LL++ + ++ + + +V L Sbjct: 1 MGARRLGREIALQLLYSRDYTVGEASSLLEMVFDEAEPGTAAG--RAFSDELVRGVLEHR 58 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA + + + R +LR+++ ++LY D+ ++ A+E AK+ Sbjct: 59 ETIDATITEKSKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIEVAKKF-GTE 117 Query: 119 HFAKLVNSILR 129 +N IL Sbjct: 118 DSPAFINGILD 128 >gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1] gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1] Length = 148 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56 KS ARL + L + + + LL + + ++ +V Sbjct: 6 KSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIEDVTYAQAEESFFDDVVQGV 65 Query: 57 LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 R IDA++ L SL R ++Q+LR ++L DVA + V+ A Sbjct: 66 DRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVDVAHA 125 Query: 114 DKENRHFAKLVNSILR 129 ++ A VN +L Sbjct: 126 FY-DKREAGFVNGLLD 140 >gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis pv. citri str. 306] gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv. citri str. 306] Length = 159 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D +V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 S+ + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RSVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREK 135 + E Sbjct: 146 AVEW 149 >gi|326913075|ref|XP_003202867.1| PREDICTED: putative methyltransferase NSUN3-like, partial [Meleagris gallopavo] Length = 330 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 98/241 (40%), Gaps = 17/241 (7%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTA 268 +++ +A++ +PV + VLDLCAAPGGK+ ++ + Sbjct: 97 PSQKHQAGKLKEYYLLNAASVLPVLALEVKDGEDVLDLCAAPGGKSVVILQCARPGQFHC 156 Query: 269 LDVSK---RRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI 322 + + R L++ + ++ + +D K +D +LVDAPCS+ + Sbjct: 157 NEYDELRSRWLKQTMESFIPHPVFNLITVSNLDGRQIGELKPEFYDKILVDAPCSNDRSW 216 Query: 323 RRHPDVLW-TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 D+ T + + Q +LL I ++PGG +V+S C+L K+++ V+ +L Sbjct: 217 LFSSDIQQATLRLLQRNELSVLQFQLLRSAIKALRPGGSLVYSTCTLSKEENSSVINLIL 276 Query: 382 RSSPIPVELVPLNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S + + A S + + + + + P+ + L++ Sbjct: 277 NSCTNVIPVNISEIAKAVSQEFTFHSGTQHHELLVLPEKGRAWGP-------MYVAKLKK 329 Query: 441 L 441 + Sbjct: 330 M 330 >gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia vietnamiensis G4] gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4] Length = 145 Score = 90.0 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + S + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGY---DKADKELLEAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + + L + + + +L ++ ++ + + +++ AVE K + Sbjct: 58 EHATLVEAITPSLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELTKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|145482435|ref|XP_001427240.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124394320|emb|CAK59842.1| unnamed protein product [Paramecium tetraurelia] Length = 390 Score = 90.0 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 108/299 (36%), Gaps = 41/299 (13%) Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 I + +YI + E+ + + + + P F +G Sbjct: 111 EQNKIYEQEKKYIYIRALQQLPFESDPDEHIPNLCKVDYDI---YSQYLSKNPEFLKGNT 167 Query: 224 WVQDASASIPVQLFGTLNNLS----VLDLCAAPGGKTAQLIVSGAKV------TALDVSK 273 ++ + +S N ++D CAAPG KT QL + A++ + Sbjct: 168 YIVQSKSSALPAYLLLRNIKDKIADIIDCCAAPGNKTIQLSHYAKQNNITGKIYAIERDE 227 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHP----- 326 +R E L+ L++ + + + D P+ + L+D CS +G ++ Sbjct: 228 KRFEILKNRLNKYNCDNVEPLNFDFLTIKPQDYPNVKIALLDPSCSGSGMLQLRMIEASK 287 Query: 327 ----DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 V ++ S Q+ +L ++F K ++++S CS+ K+++E+V L Sbjct: 288 DDSIQVPENKNEQVTQLSQFQQK--MLHHLTFFKKLKLIIYSTCSIYKEENEDVANNFLA 345 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ +D + ++R+ P DGFF +R Sbjct: 346 HHQKWESVNLFPEWPYRGVDNN-----QHYVRVPPKE----------SDGFFVAMFKRK 389 >gi|328873410|gb|EGG21777.1| Putative nucleolar protein [Dictyostelium fasciculatum] Length = 475 Score = 90.0 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 9/162 (5%) Query: 288 LYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR---HPDVLWTRDTDDIVKSACFQ 344 L Y +D V+VDA CS +IR + + ++ + Q Sbjct: 307 LPDLYFSTDYFMRYSNSLYYDRVIVDAECSLDASIRHLIQYSKIGRNFIPSELTELTNLQ 366 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +KLL G + +K GG++V+S CS K ++E+VV +L ++P +L P + + Sbjct: 367 KKLLQTGFNLLKEGGVLVYSTCSFCKAENEDVVTWLLENNPNS-QLEPCFGDTDRDTESD 425 Query: 405 MALSPEGWIRITPD-----MLEKIDGVSSGMDGFFAVALRRL 441 I + P +G G F + ++ Sbjct: 426 GDGQSNQNITVVPFSRGYIKHTYRFYPKNGTSGMFIARIVKM 467 Score = 38.0 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 186 IETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV 245 IE + + I S P + +G+ + DAS+ + +V Sbjct: 113 IEQELKTPLKELAWLPNFYQLKSTVGISSSPSYKKGIMYGMDASSGAAILALDPQPGDNV 172 Query: 246 LDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 LD+C APG K + I VT +D+S RL + + + + + + DA + Sbjct: 173 LDICCAPGTKFCMIADLIKGQGSVTGVDISPSRLGSCKTVIKKYKIPKARLFQCDATTFN 232 Query: 303 PKKL 306 K Sbjct: 233 IKAP 236 >gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae Cit 7] Length = 165 Score = 90.0 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGPYFRELLHGVATNQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 IDA L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDAALSPCLDLTIEELDPIELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141 Query: 121 A 121 Sbjct: 142 K 142 >gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus CB15] gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus NA1000] gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15] gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000] Length = 149 Score = 90.0 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVT 56 + ARL + L + + ++ L+ D+ + Sbjct: 7 QPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEGEQLAAADETFFADLARGV 66 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 + +ID + L L R + + +LR +++Y DV V++ VE AK Sbjct: 67 VTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEIAKS 126 Query: 114 DKENRHFAKLVNSILR 129 E + +N L Sbjct: 127 FFEGPE-SGFINGALD 141 >gi|322494338|emb|CBZ29639.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 413 Score = 90.0 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 42/264 (15%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274 + F +++ D +++ V+ +VLD+CAAPGGK+ + + AL ++ Sbjct: 144 IDAFGIKAYYLLDYASAHVVEQLQVGAFDTVLDMCAAPGGKSIAVAQFLSPDGALTCNET 203 Query: 275 RLEKLRCNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRR 324 R ++ L + + DA + F VLVDAPCSS Sbjct: 204 RADRCARLRRNLQEHVPVNYVPWRTTQRDAQTWYDPGAFSRVLVDAPCSSERHLLQQSGG 263 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P L + + A QR LL + I + GG +V+S CS+ +++ VV +VL+ + Sbjct: 264 SPLSLREWSEETTAQLAALQRMLLQRAIETCRVGGRIVYSTCSISPLENDGVVGEVLQRT 323 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPE-------------------------GWIRITPDM 419 V+++ +SA + + + + PD Sbjct: 324 RCEVKVIKTSSATAAAPVAPPKTATDASESDASGAEACGLHTPTVLGEATAYGRLLLPDA 383 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQ 443 F L + + Sbjct: 384 CHGWGP-------MFFCVLEKTAE 400 >gi|260897994|ref|ZP_05906490.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus Peru-466] gi|308088047|gb|EFO37742.1| ribosomal RNA small subunit methyltransferase F [Vibrio parahaemolyticus Peru-466] Length = 264 Score = 90.0 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 11/105 (10%) Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 +++ A Q+ L+ +KPGG++V+S C+L +++++V + + VE L+ Sbjct: 1 SVLEIADTQKDLIESAFHALKPGGVLVYSTCTLSTEENQQVCHHLKETFGDAVEFESLDG 60 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + AL+ EG++ I P + + GFF +R+ Sbjct: 61 LFE---NANAALTEEGFLHIFPQVYDCE--------GFFVARIRK 94 >gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6] gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6] Length = 166 Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 4/120 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 AR +++ L SL + D+ F DQ I++ L Sbjct: 27 KRRAARQLATQALYQRHMAGTSLNEIEAQFRVDNDFTF---ADQSYFHDILHGVPANLTE 83 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 IDA L L +L +LR+S ++L +DV V++ +E AK Sbjct: 84 IDAALTPCLDLTLEELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVYGSTDGHK 143 >gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827] Length = 139 Score = 89.6 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + ++ ++ + LL G + +++ ++V Sbjct: 1 MGARTKARKRAVDVIYEADQRGVDAVTLLSDRVGSTDVPPINE----YTVSLVEGVTAHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LRV + ++L+ DV D +D AVE AK Sbjct: 57 ARIDDLISEHSEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVELAKG-LSTD 115 Query: 119 HFAKLVNSILRR 130 + VN +L R Sbjct: 116 DSPRFVNGVLGR 127 >gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 165 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D +++ Sbjct: 25 AKRREARQMATQALYQWHMAGHALNEIEAQFRVDNDFSNV---DGTYFHELLHGVATNKT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141 Query: 121 A 121 Sbjct: 142 K 142 >gi|260821818|ref|XP_002606300.1| hypothetical protein BRAFLDRAFT_67540 [Branchiostoma floridae] gi|229291641|gb|EEN62310.1| hypothetical protein BRAFLDRAFT_67540 [Branchiostoma floridae] Length = 476 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 55/369 (14%), Positives = 117/369 (31%), Gaps = 26/369 (7%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHF--AKLVNSILRRVSREKIELLQRIAGISIIP 149 + + V V+D Q R + + + +++ Sbjct: 114 EFKHNRVPSQLVLDHFDRQYGRQFGSDWSDIKAALMAPKLNGILLNNFTEVSSKVATMLE 173 Query: 150 EWFKERLENFYGKER---VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLK 206 E + + + ++ + + + + + + Sbjct: 174 EQRLQNVSDICSVLEKTLTPHLNKHDEAQEEEAIGLSEPFRNHQKNAESKLKFYIHPENR 233 Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV 266 + +++Q A++ +PV + SVLD+CAAPGGK+ L+ + Sbjct: 234 HVWFPKHKHVPRQLKQYFLQGAASLLPVLALDVQQDDSVLDMCAAPGGKSLALLQTAELG 293 Query: 267 T--ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------PKKLFDAVLVDAPCS 317 + + R +L L +D FD VLVDAPCS Sbjct: 294 LLTSNEPDLWRKRRLVETLQSYIPQEILATRVDMTKLSGVHFGNVAPNAFDKVLVDAPCS 353 Query: 318 STGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 + + V +D Q LL + V+PGG VV++ C+L ++++++V Sbjct: 354 NDRSWLYNRNSVGMQMRMEDRRHLPQLQASLLRSALHAVRPGGSVVYATCTLSQKENDDV 413 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI----TPDMLEKIDGVSSGMDG 432 V+ V + + + + + + R P + Sbjct: 414 VESVFEQFSKNKSRIDVINLSNLTENFWRIFRFDSSTRFGQLVLPHLDANWGP------- 466 Query: 433 FFAVALRRL 441 + L+++ Sbjct: 467 MYFAKLKKV 475 >gi|21552772|gb|AAM62319.1|AF416611_1 Williams-Beuren Syndrome critical region protein 20 copy C [Homo sapiens] Length = 291 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 81/247 (32%), Gaps = 39/247 (15%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---V 261 + + P + G +QD ++ +P L KT+ L Sbjct: 6 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLK 65 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCS 317 + K+ A D+ RRL + L + ++ E D P VL+D CS Sbjct: 66 NQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCS 125 Query: 318 STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 +G R + +V+S CSL ++++E++V Sbjct: 126 GSGMPSRQLEEPGAGTPSP-----------------------RLVYSMCSLCQEENEDMV 162 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 Q L+ +P L P A ++ E +R +P GFF Sbjct: 163 QDALQQNPGAFRLAPALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAV 213 Query: 438 LRRLIQP 444 + R+ P Sbjct: 214 IERVEMP 220 >gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65] gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65] Length = 128 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 4/111 (3%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L SL+ + D+ +S+ D R I+ R L +D L L Sbjct: 1 MQALYQWDLAGASLSNIEAEFLTDN---DMSKVDTEYFRDILRGVPRELDDLDEKLAPCL 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 ++ + +LR+ ++L+ +DV V++ +VE +K+ N Sbjct: 58 SRNMQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESHK 108 >gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae WSM419] gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419] Length = 160 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L D R+IV +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGDTYLRADASWFRSIVAGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ++D ++ L +L R +++ +LR +IL DV +V VE AK ++ Sbjct: 78 RKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKDVPVPVIVTEYVEIAKAFFQD 137 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 138 EE-PKLVNAVLDR 149 >gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti 1021] gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C] gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83] gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti 1021] gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83] gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C] Length = 160 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L D R+IV +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDGDTYLRADASWFRSIVAGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ++D ++ L +L R +++ +LR +IL DV +V VE AK ++ Sbjct: 78 RKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKDVPVPVIVTEYVEIAKAFFQD 137 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 138 EE-PKLVNAVLDR 149 >gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp. SA3_actG] gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp. SA3_actF] gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces sp. Tu6071] gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces sp. Tu6071] Length = 144 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V Sbjct: 1 MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRGDTQQPPVSEYTMELVEGYAEHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID V+ L R + ++R+ +++++D D V+D AVE AK + Sbjct: 61 RRIDEVIAKYSVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|157874150|ref|XP_001685566.1| hypothetical protein [Leishmania major strain Friedlin] gi|68128638|emb|CAJ08770.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 414 Score = 89.6 bits (220), Expect = 9e-16, Method: Composition-based stats. Identities = 63/288 (21%), Positives = 105/288 (36%), Gaps = 31/288 (10%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLP--GFAEGVWWVQDASASIPVQLFGTLNNLS 244 + KL L L I P F +++ D +++ V+ + Sbjct: 114 DDDEAKLQGKALAAAADDLLHRNGVIDKPPIDAFGIKAYYLLDYASAHVVEQLQVGAFDT 173 Query: 245 VLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------AEDIIEMDA 298 VLD+CAAPGGK+ + + AL ++ R ++ L + + DA Sbjct: 174 VLDMCAAPGGKSIAVAQFLSPDGALTCNEARADRCARLRRNLQEHVPVNYVPWRTTQRDA 233 Query: 299 FDYCPKKLFDAVLVDAPCSST----GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 + F VLVDAPCSS P L + V+ A QR LL + I Sbjct: 234 QTWYDPGAFSRVLVDAPCSSERHLLQQSGGSPLSLREWSEETTVQLAALQRMLLQRAIET 293 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN--------SAYWKSIDMAMA 406 + GG +V+S CS+ +++ VV +VL+ + V+++ + A K+ A Sbjct: 294 CRVGGRIVYSTCSISPLENDGVVGEVLQRTRCEVKVIKTSPAAAAAAPVALPKTATDAGE 353 Query: 407 LSPEGWIRITPD----------MLEKIDGVSSGMDG-FFAVALRRLIQ 443 G P + + G F L + + Sbjct: 354 SDASGAEACAPHTPTVLGEATAYGRLLLPDTCHGWGPMFLCVLEKTAE 401 >gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium NOR51-B] gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium NOR51-B] Length = 149 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 4/118 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L R LT + D+ F + ++ +R + Sbjct: 12 RRKARHYALQALYQWTMNRNDLTEIEAEFRVDNDFSHVDGE---YFHELLTGIVRTADSL 68 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 D L +L S+ + LLR+ ++ +DV ++ AV AK+ F Sbjct: 69 DESLVPLLDRSISELDPVERNLLRLGAFELRDRIDVPYKVAINEAVALAKKFGATDSF 126 >gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S] gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S] Length = 148 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56 KS ARL + L + + L LL + + ++ +V Sbjct: 6 KSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIEDVTYAQAEESFFDDVVQGV 65 Query: 57 LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 R IDA++ L SL R ++Q+LR ++L DVA + V+ A Sbjct: 66 DRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVDVAHA 125 Query: 114 DKENRHFAKLVNSILR 129 ++ A VN +L Sbjct: 126 FY-DKREAGFVNGLLD 140 >gi|268533144|ref|XP_002631700.1| Hypothetical protein CBG20899 [Caenorhabditis briggsae] Length = 789 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 70/451 (15%), Positives = 142/451 (31%), Gaps = 75/451 (16%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLISSLPRK--KYSLQ---QLLRVSVAQ------IL 94 + L+R + +L+F P D +L L + ++ LL V + + + Sbjct: 359 KALLR-LSCESLKFRPVFDEILK---DKELRKMKNDPNINGSVDLLYVLMYETLVGSGLN 414 Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 +V+ + K ++ ++ +++ +W E Sbjct: 415 RCSQEMKSVISRRATRMKEVEKELGADGRGIKSIKEAEEGAKKIVIPRYARINTLKWTVE 474 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 E + A + ++ + + + L +I + Sbjct: 475 EALKTLETEEWKILGTA-------SVEKFPELVANMKE-DEIYKDPHVENLLIFAPNIQN 526 Query: 215 LPGF---AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTA 268 + + +QD ++ +P L V D CAAPG KT+ ++ + KV A Sbjct: 527 FHEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMDNQGKVWA 586 Query: 269 LDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC----PKKLFDAVLVDAPCSSTGTIRR 324 +D + R+ ++ LD + D +VD PCS +G ++R Sbjct: 587 MDRAADRVATMKQLLDGSKVAIASAFCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIVKR 646 Query: 325 HPDV-----------------------------LWTRDTDDIVKSACFQRKLLLQGISFV 355 ++ FQ +L + Sbjct: 647 MDEITGGNAEKERLEKLKNLQVKRHEGLNLEQNNINSKKMAADYKLHFQAMILKHALKL- 705 Query: 356 KPG-GIVVFSNCSLDKQDSEEVVQKVLRSS--PIPVELVPLNSAYWKSIDMAMALSPEGW 412 PG V+S CS+ ++++E+VV +VL + L W ++ E Sbjct: 706 -PGLKRAVYSTCSIHEEENEQVVDEVLLDTYVRQNFVLKKDVLPEWTHRGLSTYEVGEHC 764 Query: 413 IRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +R P + +GFF R+ + Sbjct: 765 LRADPKVTL--------TNGFFVAVFERVKK 787 >gi|157132768|ref|XP_001662635.1| Nop2p, putative [Aedes aegypti] gi|108871080|gb|EAT35305.1| Nop2p, putative [Aedes aegypti] Length = 491 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 57/368 (15%), Positives = 121/368 (32%), Gaps = 32/368 (8%) Query: 93 ILYLDVADYAVVDLAVEQAKRDKE-NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 + DV D V E A+ + + + + + I+ +AG+ Sbjct: 134 LYKEDVPDLEGVREVNETAEEFVDYKKSLNRTLRDDAEMDFQRLIDHNVGVAGLQEFIPA 193 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 K + + E + + + ++ E N + + + Sbjct: 194 SKLKGMEDFISESDHYKYYNNSADFPVSIEMEHSFE---IPENLEIFSYERGNVSDFRPP 250 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTAL 269 G ++ D ++ +P VLD CA+PGGK + + Sbjct: 251 RSCSTGVLSH--FLMDGASVLPALALDVQPGDRVLDACASPGGKSLLMLQTLRPGTLVCN 308 Query: 270 DVSKRRLEK--------LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST-- 319 DV + R+ K + + DA D +++D +LVD PC++ Sbjct: 309 DVQESRVNKIKKLMNSYFYNFGEACKKQRCFVTHQDARDIKEYEMYDRILVDVPCTTDRH 368 Query: 320 GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 + ++ + + ++ Q +L + ++PGG +V+S CSL ++ VV Sbjct: 369 SVMENDNNIFKSSRVKERLRLPELQAGILTNCMKLLRPGGTLVYSTCSLSPVQNDGVVHM 428 Query: 380 VLRS----SPIPVELVPLNSAYWKSID---MAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 L + + + + + L+ D A + + + P + Sbjct: 429 ALSNVFSDTGMTLTVKDLSLVMQPFSDMYKFAYPNTLKYGQLVLPFLPANFGP------- 481 Query: 433 FFAVALRR 440 + L R Sbjct: 482 MYFCKLVR 489 >gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 136 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+V+ L V +++ F L + L ++I+ TL Sbjct: 1 MPRRHQARIVALKSLYEVDLTGHDPDKVIERRL---LFAELGPELETLAQSILAGTLAAR 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 D+++ + + + + + +LR+++ +I++ + V ++ AVE AK + Sbjct: 58 EEADSLIYRLAPTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVELAKEF-GSD 116 Query: 119 HFAKLVNSILRR 130 AK +N +L Sbjct: 117 GSAKFINGVLSS 128 >gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium radiobacter K84] gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium radiobacter K84] Length = 160 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDIGGTGVLEVVAEYEAHRLGQELDGDTYLKADASWFRSIVSGVVREQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR +IL DV +V VE A + Sbjct: 78 TRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKDVPVAVIVTEYVEIAHAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 165 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQA 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 IDA L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDAALTPCLDLTIEELDPIELAVLRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens SBW25] gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens SBW25] Length = 166 Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 AR +++ L SL + D+ F D I++ L Sbjct: 27 KRRAARQLATQALYQRQIAGASLNEIEAQFRVDNDFTF---ADLPYFHDILHGVHAHLTE 83 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 IDA L L ++ ++R+S ++LY DV V++ +E AK Sbjct: 84 IDAALAPCLDLTIDELDPVELCVMRLSAWELLYRVDVPYRVVINEGIELAKVYGSTDGHK 143 >gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297] gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297] Length = 151 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR ++ L S+T + D+ +S+ D+ ++ + Sbjct: 11 RRKARRLAMQALYQWHVADQSVTQIEAEFLTDN---DVSKFDKDYFSEVLRGVAASKSEL 67 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAK 122 D+ +D + +L +LR+ + L+ +DV +++ VE +K N + Sbjct: 68 DSHVDKHIDRALKDLTPVELAILRMGAYEFLHRIDVPYKVIINEGVELSKTFGANE-AHR 126 Query: 123 LVNSILRR 130 VN +L + Sbjct: 127 FVNGVLDK 134 >gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 156 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D +V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 S+ + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RSVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREK 135 + E Sbjct: 146 AVEW 149 >gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae L20] gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 137 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L + S+ + E + ++ D R ++ T+ Sbjct: 1 MKVSPRRRARECAVQALYSWYVSQNSVEEV---ELSFVTDQDMNGVDLPYFRKLLRGTVL 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ++ ID L L + + +LR+S ++ Y LDV V++ +E AK + Sbjct: 58 YVEAIDNDLRPFLDRAEDEVDPIERTILRLSAYELKYELDVPYKVVINEGIEVAK-VFGS 116 Query: 118 RHFAKLVNSILRR 130 K +N IL + Sbjct: 117 DDSHKYINGILDK 129 >gi|312220561|emb|CBY00502.1| similar to tRNA (cytosine-5-)-methyltransferase ncl1 [Leptosphaeria maculans] Length = 840 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 44/195 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------- 266 Q+ + IP + VLD+CAAPG K+AQL Sbjct: 156 ISRQEVVSMIPPHFLDVKPGMVVLDMCAAPGSKSAQLAEMIHGDEEERVRRVANGDTVNL 215 Query: 267 ----------------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-------- 302 A D +R L + RL+ + + DA + Sbjct: 216 TEEGDYSDDGRSTGLLIANDTDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSEN 275 Query: 303 ----PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPG 358 +D +L D PCS GT R++P+V D + Q ++L +G+ +K G Sbjct: 276 GQKKQYLKYDRILADVPCSGDGTARKNPNVWQKWTPKDGLGLHNLQLRILFRGLQMLKKG 335 Query: 359 GIVVFSNCSLDKQDS 373 G +V+S CS++ ++ Sbjct: 336 GRMVYSTCSMNPVEN 350 >gi|149246149|ref|XP_001527544.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146447498|gb|EDK41886.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 494 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 92/265 (34%), Gaps = 33/265 (12%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQLIVS- 262 E + + + G +QD ++ P + V+D C+APG KT Sbjct: 194 HPKEKLSAQEAYKLGEVIIQDRASCFPAHILNQDPNDVHKQVMDACSAPGNKTTHAAAYL 253 Query: 263 ----GAKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAV--LV 312 + V A + +R+ LR ++ I D P+ D +V Sbjct: 254 PQGEDSVVFATERDAKRVAILRTMCEKATGKNRKRLVQITHKDFTTINPEDFPDVTGLIV 313 Query: 313 DAPCSSTGTIRR-------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-VVFS 364 D CS +G R T D + + K A FQ ++ +SF PG VV+S Sbjct: 314 DPSCSGSGIFGRAMDENSEESKSDSTIDQERLRKLASFQFVIMKHALSF--PGARKVVYS 371 Query: 365 NCSLDKQDSEEVVQKVLR----SSPIPV-----ELVPLNSAYWKSIDMAMALSPEGWIRI 415 CS+ +++E VV +L + +++P + E R Sbjct: 372 TCSIHAEENERVVIDLLLDEQIRNQGWTLASRDKVIPEWPRRGIESEFVKMSRDEQVCRD 431 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + + G GFFA + Sbjct: 432 LAGGCVRANPKEDGGIGFFAACFVK 456 >gi|300868051|ref|ZP_07112689.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Oscillatoria sp. PCC 6506] gi|300333971|emb|CBN57867.1| Fmu (Sun)/nucleolar NOL1/Nop2p [Oscillatoria sp. PCC 6506] Length = 315 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 11/230 (4%) Query: 196 VMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL--FGTLNNLSVLDLCAAPG 253 + + G ++ D S+ L + +LD+CAAPG Sbjct: 57 TTWQPEFVDRLAINTKPGKHQLHESGHYYCLDFSSIFAASLLLTISQPIKLILDMCAAPG 116 Query: 254 GKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA-- 309 GK+ + + +V +R+ L NL R + + D+ A Sbjct: 117 GKSIFAWKILHPELLISNEVIGKRIGMLISNLKRCQISQSVVTSADSEKLAEIIPQTANL 176 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 V+VDAPC+ + + I +A Q+++L V P G + + C+ Sbjct: 177 VIVDAPCTGQSLLAKGEKAPGCFHPVTINSNANRQKRILANSAKIVAPQGYLAYMTCTYS 236 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 ++E+V + + P L+ R+ P Sbjct: 237 PAENEQVTEWFIAKFPQF-----QPVEVPDLAAHQSHLTTLHCYRMWPQD 281 >gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113] gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113] Length = 150 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 3/149 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ ++ +L + +V + + Sbjct: 1 MAARNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVSEYTMQLVEGYAQHI 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + +L R + +LR+ ++++ D D V+D AV+ AK + Sbjct: 61 DRIDELIATYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQLAKEFSTDD 120 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISI 147 A VN +L R+ K L + Sbjct: 121 SPA-FVNGLLGRIKELKPTLRRDQEHPEH 148 >gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113] gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113] Length = 148 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 7/132 (5%) Query: 1 MKSGM-NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + L + + + + D +A++ + Sbjct: 1 MSNRRSKARTAALQGLYQWQLTGQDVDKIDIEFIV----QDIRGIDHAYFQALLQGVPQR 56 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +D L L + +LR+ ++L ++ V++ A+E AKR Sbjct: 57 QWELDECLGPFLDRPIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRF-GAE 115 Query: 119 HFAKLVNSILRR 130 H + VN IL + Sbjct: 116 HGHRYVNGILDK 127 >gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912] gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912] Length = 148 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 7/138 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG----DSAFRLLSQRDQILVRAIVNVTLR 58 S AR L V L+ + + A S D R ++ TL Sbjct: 2 SRRAAREKVLQALVAVDLGGTDAEEALEQVWRLRGDEEAEGDPSPEDADFARGLLFGTLE 61 Query: 59 FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 R+D VL L R + +LR++V ++L++ V++ AVE AKR Sbjct: 62 EGRRVDGVLRTYSTGWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELAKRY-S 120 Query: 117 NRHFAKLVNSILRRVSRE 134 + VN +L R+ Sbjct: 121 TEESGRFVNGVLARIVAH 138 >gi|238879678|gb|EEQ43316.1| conserved hypothetical protein [Candida albicans WO-1] Length = 492 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 73/435 (16%), Positives = 141/435 (32%), Gaps = 61/435 (14%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + A+V TL++ ID + + S + ++++ + ++ + Sbjct: 68 IFALVYSTLKYKEYIDVI----VKKSKIQHDLQIKKV---------KMSNELLCLLVHDL 114 Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + + + + ++ L +R + E + ++L + I Sbjct: 115 LFSSKGRIQSGKHPMKDAFLSNKTRLQAEFTKL---KLKYKVKSVDQLPTKEADDDETPI 171 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--------------RLKELPESIVS 214 I+ + ID+ + + +L V E I S Sbjct: 172 RWFRINTIKIDIDRFYTKHPFFKQLQPVSSIDEITETGIIYSDDYIPNLFGVHPREKITS 231 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLIVS----GAKVT 267 + G +QD ++ P + + V+D CAAPG KT + V Sbjct: 232 TEAYRLGEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVY 291 Query: 268 ALDVSKRRLEKLRCNLDR----LHLYAEDIIEMDAFDYCPKKLFDAV--LVDAPCSSTGT 321 A + +R++ L+ ++ + D P+ D +VD CS +G Sbjct: 292 AFERDSKRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPEDFPDVTGLVVDPSCSGSGI 351 Query: 322 IRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSE 374 R + + + K A FQ ++ +SF P VV+S CS+ Q++E Sbjct: 352 FGRALEDSHNEEEIENVNTERLNKLAGFQFAIMKHALSF--PSARKVVYSTCSIHAQENE 409 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDMLEKIDG 425 VV +L + L E +I+I + + Sbjct: 410 RVVVDLLSDPEVNRRGWKLADREIVLPKWDRRGFEEEFIKISRDPKECARLAGGCVRANP 469 Query: 426 VSSGMDGFFAVALRR 440 G GFFA R Sbjct: 470 KEDGGIGFFAACFVR 484 >gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1] gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1] Length = 156 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + + ++ + A + D +V L +D L L Sbjct: 24 LQAIYAWQISGGNAQQVIAQFAHEQAHEI---ADLTYFEDLVTGVLSHRASLDEALAPHL 80 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ + +LR++ ++L+ DV V++ A+E AKR + H VN +L R Sbjct: 81 DRAVEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRF-GSEHGHTYVNGVLDR 139 Query: 131 VSREKIE 137 S + + Sbjct: 140 ASAQWRQ 146 >gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78] gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78] Length = 144 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V Sbjct: 1 MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRNDTQQPPVSEYTMELVEGYAEHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID V+ L R + ++R+ +++++D D V+D AVE AK + Sbjct: 61 RRIDEVIAKYSVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|327271095|ref|XP_003220323.1| PREDICTED: putative methyltransferase NSUN4-like [Anolis carolinensis] Length = 399 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 22/234 (9%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLR 280 +++ DA++ +PV + VLDLCAAPGGKT L+ +G + A D+S R +L Sbjct: 172 YYLLDAASILPVLALNIQPDDLVLDLCAAPGGKTLALLQTGCCRGLAANDLSTSRTRRLN 231 Query: 281 CNLDRL------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332 L R + + + FD VLVD PC++ ++ Sbjct: 232 DILHRYLPQELQKVVRVTSWDGRKWGELETSTFDRVLVDVPCTNDRHSLREEDNNIFMRM 291 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPV 388 + Q +LL+ GI KPGG VV+S CSL + +E V+++ + I V Sbjct: 292 RKGERQNLPRLQLELLVAGILAAKPGGEVVYSTCSLSQLQNEYVIERAVELMAIQYQIEV 351 Query: 389 ELVPLN-SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++ L+ + I P + + LRR+ Sbjct: 352 QVEDLSYFRKLFQSTFSFYPDCRLGELILPHLTANFGP-------MYFCKLRRM 398 >gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 156 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D +V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLTNRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREK 135 + E Sbjct: 146 AVEW 149 >gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria ATCC 35937] gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria ATCC 35937] Length = 156 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D ++V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIGQFAHEQAH---EVADLAYFESLVEGVLTHRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREK 135 + E Sbjct: 146 AVEW 149 >gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1] Length = 137 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + L + + D+E + + + D R +++ +DA Sbjct: 7 PARECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDA 63 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L L + +LR+++ ++ DV ++ A+E AK K V Sbjct: 64 LMAPFLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFV 122 Query: 125 NSILRR 130 N +L + Sbjct: 123 NGVLDK 128 >gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485] gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485] Length = 150 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 8/136 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+ + +L V ++ +L+ D +S +R +V T + Sbjct: 10 RHRVRIAALQILFEVDETDHAIDQVLERRLTDEP---MSAESAEFLRRLVFGTWEHRSYL 66 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDKENRH 119 D +++ + + + +LR+++ ++L +V AV++ AVE AK + + Sbjct: 67 DRIIEEAAPNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVINEAVELAKEF-GSDN 125 Query: 120 FAKLVNSILRRVSREK 135 ++ VN +L V Sbjct: 126 SSRFVNGVLGTVVTRY 141 >gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor NM305] gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor 202] gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor NM305] gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor 202] Length = 144 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 8/137 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLL----DLEYGDSAFRLLSQRDQILVRAIVN 54 MK AR + L + S+ + + + D+ L I Sbjct: 1 MKLTPRRRARECAVQALYSWAISQNSVEEIELVFHTDTFAAEDPDTEGKIDKALFTRIFR 60 Query: 55 VTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 T+ + ID L L + + +LR++ ++ + D +++ A+E AK Sbjct: 61 GTVASIDEIDRSLQPFLDRNPENVDLIERSILRMAAFELHFEQDTPYKVIINEAIEVAKA 120 Query: 114 DKENRHFAKLVNSILRR 130 + K +N +L + Sbjct: 121 F-GSDDSHKYINGVLDK 136 >gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565] gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565] Length = 137 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + ++ + + D + + D R ++ Sbjct: 1 MKPSERRKARHCATQAIYQWQMTKANVGDIEEQFKIDQDTKGV---DLNYFRDLLFGVAL 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D V L L + +LR++ ++ DV V++ A+E AK + Sbjct: 58 HCSELDKVFAPFLSRPLEEVDMVDKAILRLATYELTRRDDVPPRVVINEAIELAKAFAAD 117 Query: 118 RHFA 121 Sbjct: 118 DSHK 121 >gi|332298537|ref|YP_004440459.1| Fmu (Sun) domain protein [Treponema brennaborense DSM 12168] gi|332181640|gb|AEE17328.1| Fmu (Sun) domain protein [Treponema brennaborense DSM 12168] Length = 286 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 91/236 (38%), Gaps = 21/236 (8%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRR 275 + + D + +LD+CAAPGGK + L+ A++ + + S R Sbjct: 50 DAYLAYFLDRGSIKAALSLPLGGAERILDMCAAPGGKTLVVSSLMDGTAELVSNERSHER 109 Query: 276 LEKLRCNLDRLHLYAED----IIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 + +L D + + D + +D +L+DAPCSS + P L Sbjct: 110 MMRLSRVADEHLPPSVRARVRVTCGDGARLCLSRTECYDRILLDAPCSSERHVLSSPQYL 169 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--- 386 + + Q LL ++PGG ++++ C+L +++EVV ++ + Sbjct: 170 CEWSPARVKTLSVTQWALLSSAFRLLRPGGYLLYATCALSPAENDEVVARLEKKFSGVQF 229 Query: 387 --PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + VP++++ + + + + PD + + +R+ Sbjct: 230 VRNLPPVPVSASSFFDGALPDGEPTAFGVHVLPDSCGGAGPL-------YFSLIRK 278 >gi|293352128|ref|XP_002727930.1| PREDICTED: NOL1/NOP2/Sun domain family member 3 [Rattus norvegicus] Length = 349 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 18/229 (7%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282 +++ +A++ +PV + VLDLCAAPGGK+ L+ T V + + + Sbjct: 113 YYLLNAASLLPVLALEVKDGEPVLDLCAAPGGKSIALLQCAYPGTVCSVLTHIVPRFSVS 172 Query: 283 LDRL---------HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLWTR 332 + + VLVDAPCS+ + T Sbjct: 173 DTWKADEKRCENEGAGLGILSNRRTAEDDDWLWNSKVLVDAPCSNDRSWLFSSDSQKATY 232 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 Q LL I ++PGG++++S C+L K ++++V+ ++L S V + Sbjct: 233 RXCQRNNLPALQVGLLRSAIKALRPGGLLIYSTCTLSKAENQDVISEILTSDSNIVPMDI 292 Query: 393 LNSAYWKSIDMAMALSPEGW-IRITPDMLEKIDGVSSGMDGFFAVALRR 440 A S D A + + + + P+ + + L++ Sbjct: 293 SGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGP-------MYIAKLKK 334 >gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella dagmatis ATCC 43325] gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella dagmatis ATCC 43325] Length = 144 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S + E A + L D R + T+ + Sbjct: 11 SPRRRARECAVQALYSWYVSQNSPAEI---ELEFVAEQDLKGVDVPYFRKLFRQTVENVE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ L + + +LR++V ++ + LDV V++ A+E K Sbjct: 68 TVDVIMAPYLDRDVNEVDPIEKAILRLAVYELKFELDVPYKVVINEAIEVTK-VFGADDS 126 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 127 HKYVNGVLDK 136 >gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756] gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756] Length = 149 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 9/136 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVT 56 + ARL + L + + ++ L+ D+ + Sbjct: 7 QPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRFDRDVEGERLAAADETFFAELAKGV 66 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 + ++D + L L R + + +LR +++Y DV V++ VE AK Sbjct: 67 VAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYVEIAKS 126 Query: 114 DKENRHFAKLVNSILR 129 E A +N L Sbjct: 127 FFEGPE-AGFINGALD 141 >gi|255718407|ref|XP_002555484.1| KLTH0G10362p [Lachancea thermotolerans] gi|238936868|emb|CAR25047.1| KLTH0G10362p [Lachancea thermotolerans] Length = 529 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 69/443 (15%), Positives = 138/443 (31%), Gaps = 58/443 (13%) Query: 49 VRAIVNVTLRFLPRIDAVLDF--VLISSLPRKKYSLQQ--LLRVSVAQILYLDVADYAVV 104 + A V R+ +D +L +L +K + +++ V +L+ + Sbjct: 93 IYAAVYSCWRYNEFLDKLLKRSGILKDIPKKKGKEVFNPTTIKLLVHDLLFSKNKRIQMG 152 Query: 105 DLA-VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKE 163 E + K + + + ++ ++ L + + P RL Sbjct: 153 KHPLKEFVLKYK--ARLSSELVRLKIKLKVTDLQQLLKDDRNDMTPV-RWFRLNPIRCGA 209 Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 + I + +I A G+ + I S + G Sbjct: 210 KSEDILQELSKKFPTRVNSWTNI---APGCIYHDEYIPGLFGVHPADKITSHELYKTGKV 266 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--------KVTALDVSKRR 275 +QD ++ P + + ++D CAAPG KT + ++ A + R Sbjct: 267 IIQDRASCFPAHILNASSEDLIIDACAAPGNKTTHVAAHIFQDQAVESVRIHAFEKDPER 326 Query: 276 LEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFD---AVLVDAPCSSTGTIRRHPDVLWT 331 + LR ++ ++ D F ++D CS +G R Sbjct: 327 AKTLRTMINTAGCTKGIEVHVGDFTQLAKPGKFPDVTGFILDPSCSGSGIFGRKMIDDRN 386 Query: 332 RDTDDI-------------------------VKSACFQRKLLLQGISFVKPGGIVVFSNC 366 + D K A FQ +++ +SF +V+S C Sbjct: 387 KSKADGASPVEEEEKEEEREDISDKDLKNRLEKLASFQFEIVKHAMSF-PSAKKLVYSTC 445 Query: 367 SLDKQDSEEVVQKVLRSSPIP---------VELVPLNSAYWKSIDMAMALSPEGWIRITP 417 S+ +++E +V +L S + ++P S + E + Sbjct: 446 SVHAEENERIVVDLLLDSKVKEWGWRVRKRAGVIPTWSRRGFYKEFEEVFRDEDTAKELA 505 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + ++ G GFFAV R Sbjct: 506 EACIRVAPKEDGGIGFFAVCFER 528 >gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2] gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2] Length = 141 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR ++ L+ + ++ S + +++ D + +V + L +I Sbjct: 3 RRAAREIAMKLVYQLEIQKDSREEQIRQTLE---QENVTENDTNYITDVVEGVFKNLEQI 59 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L R +LR+S+ +I + D+ V+ AVE AK + Sbjct: 60 DKTIEMYSKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAKNYSGEESSS 119 >gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3] Length = 160 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + ++ ++ L++ D L RA+V Sbjct: 16 MKS--AARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGDELAEGDAALFRALVGD 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R +L+ L R + A+ D V+ V+ A+ Sbjct: 74 AVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQNDTPPKVVITEFVDIARA 133 Query: 114 DKENRHFAKLVNSILRRV 131 VN++L + Sbjct: 134 FFPEGRETSFVNAVLDHM 151 >gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans LB400] gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400] Length = 144 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G F + D + A+++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAVLHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ +LD+ V++ AVE AK Sbjct: 58 SEALSAAIAPCLDRPIEQLSPVERAVLLVAAFELKNHLDIPYRVVINEAVELAKTFGGAD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|119606598|gb|EAW86192.1| NOL1/NOP2/Sun domain family, member 6, isoform CRA_b [Homo sapiens] Length = 141 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 20/138 (14%) Query: 322 IRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL 381 + + P++ T ++ QRKL + +KP G++V+S C++ ++EE V L Sbjct: 1 MGQRPNMACTWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWAL 60 Query: 382 RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD---------- 431 P ++L P LS E ++ + + MD Sbjct: 61 TKFPC-LQLQPQEPQIGGEGMRGAGLSCEQLKQLQRFDPSAVPLPDTDMDSLREARREDM 119 Query: 432 ---------GFFAVALRR 440 GFF + Sbjct: 120 LRLANKDSIGFFIAKFVK 137 >gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 137 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + ++ + + D + + D R ++ Sbjct: 1 MKPSERRKARHCATQAIYQWQMTKANVGDIEEQFKIDQDTKGV---DLNYFRDLLFGVAL 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D V L L + +LR++ ++ DV ++ A+E AK + Sbjct: 58 HCNELDKVFAPFLSRPLEEVDMVDKAILRLATYELTRRDDVPPRVAINEAIELAKSFAAD 117 Query: 118 RHFA 121 Sbjct: 118 DSHK 121 >gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1] gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1] Length = 137 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + L+ + S+ L E + + +V Sbjct: 1 MGARSKARKRALDLMYGADVRGESINEALATESSRALSDPARATSWAYAQQVVVGITEHG 60 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID +++ L R + LLR+++ +ILY D V + AVE AK Sbjct: 61 DEIDELIETYSQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVESAKVH-STE 119 Query: 119 HFAKLVNSILRR 130 A +N +L R Sbjct: 120 DSAGFINGLLGR 131 >gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1] gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1] Length = 138 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 7/137 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR ++ L + + L R +V TL+ L Sbjct: 1 MSRRL-AREIAFKTLFQYDIGK---NEVEPTISQLIEENGLEGAGVEFSRQLVLGTLKNL 56 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID L L L R + +LR++ +ILY D+ ++ A+E +K Sbjct: 57 EAIDKALAGYLQKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELSKAFHSEE 116 Query: 119 HFAKLVNSILRRVSREK 135 AK +N +L +++R Sbjct: 117 -AAKFLNGVLDKLARHH 132 >gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter tengcongensis MB4] gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis MB4] Length = 140 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR +L ++ L + + Y + + + V T+ L Sbjct: 2 NRTEAREWVVKMLYQYDVSKLPLEKIFENFYEEHD----PGEQKEYIEGTVRGTVEHLEE 57 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ID ++ L R +LR S+ ++LY ++ ++ AVE AK+ + + Sbjct: 58 IDREIEKYSKDWPLYRMPRIDLAILRCSMYEMLYGNIPVSISINEAVEIAKKYSTDDSPS 117 >gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002] gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002] Length = 144 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G + + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGY---DKADHEHLDAILHGVMRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ ++D+ V++ AVE K + Sbjct: 58 SEELSAAIAPCLDRPIDQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELTKTFGGSD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|213861750|ref|ZP_03386220.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 125 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 11/87 (12%) Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR 414 ++PGG +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ Sbjct: 4 LRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLH 60 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P + + GFF LR++ Sbjct: 61 VFPQIYDCE--------GFFVARLRKM 79 >gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl] gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl] Length = 151 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+ + +L V ++ +L+ D S +R +V + Sbjct: 10 RHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAE---FLRRLVFGAWEHRSYL 66 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDKENRH 119 D +++ + + + +LR+++ ++L DV AV++ AVE AK+ + + Sbjct: 67 DRIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQF-GSDN 125 Query: 120 FAKLVNSILRRVSREK 135 ++ VN +L V Sbjct: 126 SSRFVNGVLGTVVTRY 141 >gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1] gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1] Length = 174 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 3/128 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +R ++ + + +++ ++ ++ R + D++ R ++ ++ Sbjct: 27 RSASRRLALQAVYQWQMNKTAVSE-IETQFVIDQDRDMDSCDKVYFRELLQGVTASAKKL 85 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAK 122 D + + +L L ++R+ ++ LDV ++ +VE AK K Sbjct: 86 DTLFEELLDRPLSELDPIELAVMRIGSYELSQRLDVPYRVAINESVELAKGFGATES-HK 144 Query: 123 LVNSILRR 130 VN IL + Sbjct: 145 YVNGILDK 152 >gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183] gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183] Length = 138 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR ++ +L + T +L + +S R+ ++ Sbjct: 1 MAARTKARKLALDILYAAEMRGERPTDVLAQRGRPNT-DEISAREHA--VRLIEGVQEHR 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L +L R + LLR+ ++L+ DV D + AV A Sbjct: 58 ERIDELLATYATGWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAVALATE-LSTD 116 Query: 119 HFAKLVNSILRR 130 + VN +L R Sbjct: 117 ESPRFVNGLLSR 128 >gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92] gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92] Length = 159 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 NAR + L L L D+ R D L +++ + Sbjct: 20 RRNARSYALQALYSWTLAGQPLNELEAQFRVDNDMR---DTDIRLFSELLHSIAGGKSEL 76 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAK 122 D + L ++ +LR+ ++ +V ++ +VE AK K Sbjct: 77 DQLYTDFLDRNVDELDPIELNVLRIGAYELSKRFEVPYRVAINESVELAKTFGATDS-HK 135 Query: 123 LVNSILRR 130 VN +L + Sbjct: 136 YVNGVLDK 143 >gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus iheyensis HTE831] gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831] Length = 126 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 10/130 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + +L + L +++ + + +R++V ++ Sbjct: 2 NRHKAREKAFQVLFQLDINETELEEVMETLKEKERYDV-------FLRSLVEGVIQHKSV 54 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID + L ++ R + +LR+++ +I+Y D+ ++ A+E A + Sbjct: 55 IDEKISTHLEKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELAHTF-GDEQS 113 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 114 GKFVNGVLSK 123 >gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis TAC125] gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis TAC125] Length = 136 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR+++ + ++ + ++ + D + + + Sbjct: 1 MKPAARRKARILALQAIYSWQLSGNAIADIEQQMLIENDVTKI---DVEYFKDLASGVAV 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ++D + L + +LR+S ++ + DV ++ ++E AK Sbjct: 58 NYKQLDEAVSPHLTRPFDELDMVERAILRLSSYELKFREDVPYKVAINESIELAK-MFGA 116 Query: 118 RHFAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 117 EDSHKFVNGVLDKAVKH 133 >gi|40714555|gb|AAR88536.1| RH33950p [Drosophila melanogaster] Length = 450 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 24/229 (10%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +LD+CAAPG KT+ + + V ALD S R+ + Sbjct: 212 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 271 Query: 283 LDRLHLYAEDIIEM---------------DAFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 L + P + FD +L+DAPCS G R Sbjct: 272 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCS--GLGNRPQL 329 Query: 328 VLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + QR+L Q + V+PGGI+V+S C++ + + E +V LR + Sbjct: 330 SCSIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF-VE 388 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + L W + + R+ G ++ GFF Sbjct: 389 LRLTDATPR-WGGPGLPLPGFEACKSRLL--QRFGPSGANADTVGFFYC 434 >gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501] gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501] Length = 138 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR ++ L + L L++ L + I+ T + L Sbjct: 6 SRHEARKIAVQTLYQIDINDEGLEKNLEMLTNRIEGLELED---TFLEEIITGTYQNLSE 62 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID L+ + R + +LR+++ +ILY D+ +D AVE AK ++ Sbjct: 63 IDKELNESAEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDEAVELAKEFIADKS- 121 Query: 121 AKLVNSILRR 130 K +N +L R Sbjct: 122 PKFINGVLGR 131 >gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 156 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D +V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIGQFAHEQAH---EVADLAYFENLVEGVLSNRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREK 135 + E Sbjct: 146 AVEW 149 >gi|145633871|ref|ZP_01789592.1| sun protein [Haemophilus influenzae 3655] gi|144985243|gb|EDJ92086.1| sun protein [Haemophilus influenzae 3655] Length = 166 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 8/154 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + ++ R ++++L+ V+ + SL+ L+ + +D L++ I R LPR Sbjct: 18 TALSTRAIAANLILQVLDEGKSLSALIPEV-----QLSVKAQDLPLLQEICFGVCRVLPR 72 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 ++ ++ ++ L K + LL V + Q+LY+ V +A VD V A + ++ F Sbjct: 73 LEQIIKRLVDKPLKGKTRIVHCLLLVGLYQLLYMRVPAHAAVDEVVN-ATKSLKSDSFRG 131 Query: 123 LVNSILRRVSREKIEL--LQRIAGISIIPEWFKE 154 LVN++LRR RE+ E+ + ++ PEWF Sbjct: 132 LVNAVLRRFLREQDEILAIIDKNWQTLHPEWFVN 165 >gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1] gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1] Length = 135 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 59/137 (43%), Gaps = 8/137 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + ++ ++ + + + V L+ L Sbjct: 1 MSRKI-AREQAFKILFAIDVGNNTVEEASEIVIEFLK----DENQKSFILNEVRGVLKNL 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +++ S+ R + + +LR++V +++Y D+ ++ AVE AK+ + Sbjct: 56 SNIDIIINKYSDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIAKKY-GDE 114 Query: 119 HFAKLVNSILRRVSREK 135 H K +N +L ++ + Sbjct: 115 HSYKFINGLLGSIAEDH 131 >gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109] Length = 138 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + + LL + + +V L Sbjct: 1 MGARTKARKRALDVLFEAEQRGLDVAELLAKRVVEPGTEASLPQ---YAVELVEGVLEHA 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L ++ R + LLR+ +IL+ DV D VD AV A+ + Sbjct: 58 ERIDELLATHSHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVSLARELSTDE 117 Query: 119 HFA 121 A Sbjct: 118 SPA 120 >gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046] Length = 128 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 10/136 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +++ + + + +V T + Sbjct: 1 MK-RTEARQKALQALFQLDSTELTIEEAIGHVLEEEQKSN------AFLEQLVRGTTENI 53 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA L+ L ++ R + +LR++V ++LY + + +++ A+E +K + Sbjct: 54 EAIDAALEKNLEKWTINRLPKIERTILRLAVYELLYAEETPNKVIMNEAIELSKTF-GDE 112 Query: 119 HFAKLVNSILRRVSRE 134 +K VN +L + + + Sbjct: 113 KSSKFVNGVLSKFTEQ 128 >gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae B728a] gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae B728a] Length = 165 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALKPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia phytofirmans PsJN] gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN] Length = 144 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G F + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ ++D+ V++ AVE AK Sbjct: 58 SEALSAAIAPCLDRPIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELAKTFGGAD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus sphaericus C3-41] gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein) [Lysinibacillus sphaericus C3-41] Length = 127 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 12/136 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + +L + +++ + G IV T L Sbjct: 1 MK-RHEAREKALQVLFQLDNTDLTVEEAMGHIKGQPTNV--------FYEKIVTGTAEHL 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 IDA L+ L SL R + +LR++V ++LY+ + V++ A+E K + Sbjct: 52 EEIDATLEQHLEKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELCKTF-GDD 110 Query: 119 HFAKLVNSILRRVSRE 134 +K VN +L + + + Sbjct: 111 SSSKFVNGVLSKFTEQ 126 >gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp. salmonicida A449] gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp. salmonicida A449] Length = 137 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + R ++ + + D + + D R ++ Sbjct: 1 MKPSERRKARHCATQAIYQWQMTRANVGDIEEQFKIDQDTKGV---DLNYFRDLLFGVAL 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D V L L + +LR++ ++ DV V++ A+E AK + Sbjct: 58 HCNELDKVFAPFLSRPLEEVDMVDKAILRLATYELTRRDDVPPRVVINEAIELAKAFAAD 117 Query: 118 RHFA 121 Sbjct: 118 DSHK 121 >gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK 1622] gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK 1622] Length = 140 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 4/133 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59 M + R + L + + L+ + + D R +V Sbjct: 1 MGARRTGRERALQALYQLEMATATTAEALESAWSAAEESNKRDPDAVKFARELVEGVQSH 60 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID +++ + L R + +LR+ + ++ Y D+ ++ AVE K + N Sbjct: 61 RDEIDQLIERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVELGK-NFGN 119 Query: 118 RHFAKLVNSILRR 130 + VN +L R Sbjct: 120 EESSAFVNGLLDR 132 >gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor A3(2)] gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans TK24] gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans TK24] gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)] gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans TK24] Length = 142 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVSEYTMELVEGYAGRA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LR+ ++L++D D V+D V+ AK + Sbjct: 61 ERIDELIAQYSVDWTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv. oryzicola BLS256] Length = 156 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D +V L +D L L Sbjct: 30 QAVYAWQISGGFAKQVIAQFAHEQAH---EVADLAYFENLVEGVLTNRAELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +LR++ ++LY DV +++ A+E AKR + H VN +L R Sbjct: 87 RGVEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRF-GSEHGHTYVNGVLDR 144 >gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 165 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALKPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDGH 141 Query: 121 A 121 Sbjct: 142 K 142 >gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259] gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259] Length = 145 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 5/140 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + M +T + D F+ D+ R ++ L+ + + Sbjct: 8 AREFTLQGIYAWMIGGADVTLIAANLKEDEQFKR---ADEAYFRTLLYGVLKEEDMLSSR 64 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + +L ++ + +L + ++L+ DV ++ +VE AK+ K +N Sbjct: 65 IAPLLDRAVAELSPIERSILLIGAYELLHCPDVPWRVAINESVELAKKFGGTDG-HKYIN 123 Query: 126 SILRRVSREKIELLQRIAGI 145 +L +++++ + A Sbjct: 124 GVLDKLAQDVRAVEIEHAKK 143 >gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC 9039] Length = 155 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 9/140 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLR 58 ARL + L + L L + + + R I+ L Sbjct: 7 RSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEGDQYKEAEIAFFRDILGGVLA 66 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115 ID LD L L R ++ +LR ++ D+ + V+ A Sbjct: 67 DQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKEYVDVAGAFF 126 Query: 116 ENRHFAKLVNSILRRVSREK 135 R + ++N++L ++R Sbjct: 127 G-REESGMINAVLDELARRY 145 >gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428] gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428] Length = 151 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 5/134 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD--SAFRLLSQRDQILVRAIVNVTLR 58 M R + L + + ++ + +I + + Sbjct: 1 MGKRREGREAAVQYLYQIDLSGETPVNAEQFWMLRSGPGKAPVAPKTRIFAEQLALGVRK 60 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 L ID + + L R + +LRV++ ++L+ DVA +++ A+E AK+ Sbjct: 61 HLEEIDGYIKKYTANYELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIEVAKKF-G 119 Query: 117 NRHFAKLVNSILRR 130 VN IL R Sbjct: 120 TDKSGGFVNGILDR 133 >gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator MP104C] gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator MP104C] Length = 138 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R + +L RIS L+ D + +V+ L + Sbjct: 1 MKRRRQ-RETALQVLFQAEVARISGERAFARTME---LFGLNTEDFAYAQELVDGVLAKV 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 R+D ++ V L R + ++R+++ ++ + D+ V+ A+E A+ Sbjct: 57 DRLDRIISRVSHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELARTF-GTE 115 Query: 119 HFAKLVNSILRR 130 + VN IL + Sbjct: 116 DSRRFVNGILGK 127 >gi|91088013|ref|XP_974000.1| PREDICTED: similar to Nop2p [Tribolium castaneum] gi|270012065|gb|EFA08513.1| hypothetical protein TcasGA2_TC006166 [Tribolium castaneum] Length = 460 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 70/411 (17%), Positives = 141/411 (34%), Gaps = 62/411 (15%) Query: 57 LRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE------Q 110 +R L +++ ++ K+ L+++ R+ D + + Sbjct: 85 VRTLFKLEKQYSKE-RRTVQEKQKVLREVRRI--------DRELESRANEPKNASLQASL 135 Query: 111 AKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISD 170 + ++R N++ + E + + IPE + E + Sbjct: 136 DDAELDHRRIIDSKNALSGEILHEFVPATKIKGKEDFIPESTHYKFYKNENFEVFIEEEF 195 Query: 171 ACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 P ++++ + ++ +++ D + Sbjct: 196 DLHFPEHLNVYCF-----------EEGNRSDFEPSPSGSTGVLD--------YYMMDGGS 236 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKLRCN------ 282 +PV ++LDLCAAPGGKT A + ++ A DVS R ++ Sbjct: 237 VLPVLALDIRPGNTILDLCAAPGGKTLLAIQTLYPNRIIANDVSMSRTNRVYKVAKQFLY 296 Query: 283 --LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIV 338 +R + +I P++ FD VLVD PC++ ++ + + Sbjct: 297 DLNERWLQPGKLMITNFDGRSFPQENFDRVLVDVPCTTDRHSVKENDNNIFKPSRVKERL 356 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIPVELVPLN 394 K Q LL + VK GG+VV+S CSL ++ VV L+ + I V + L Sbjct: 357 KLPETQCDLLFNALKLVKKGGVVVYSTCSLSPIQNDGVVHMTLKRIWEETKIEVVVADLA 416 Query: 395 SAYWKSID----MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A ++ + G + + P + + + L+R+ Sbjct: 417 PALRQTKSVFKLANKKIMKYGHL-VVPHLPQNYGPT-------YFCKLKRI 459 >gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b] gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b] Length = 128 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + ++ + ++ +V TL + Sbjct: 1 MK-RHEAREKAIQTLFQIEVSKLEVDEAIEFALDGEESD-------PFYEQLVTGTLEHI 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 IDA+L L + L R + +LR++ ++LY++ + + ++ AVE AK + Sbjct: 53 EDIDALLVENLKNWRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELAKSF-GDE 111 Query: 119 HFAKLVNSILRR 130 KLVN +L Sbjct: 112 EAGKLVNGVLGN 123 >gi|307185900|gb|EFN71727.1| Putative methyltransferase NSUN5 [Camponotus floridanus] Length = 750 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 21/246 (8%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI---VSGAKVTAL 269 + G +QD ++ +P L ++ VLD+CAAPG KT + + ++ A+ Sbjct: 338 HKHASYKNGEIILQDKASCLPAHLLNPVSGSIVLDMCAAPGMKTTHIAAKLQNYGQIYAV 397 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD--AVLVDAPCSSTGTIRRHPD 327 ++ +R E L + H + + DA PK+ +LVD CS +G + R Sbjct: 398 EIDAKRFETLFKQIKTSHSFCVKPLNQDALTLDPKQYSHVEYILVDPSCSGSGIVDRPEQ 457 Query: 328 VLWTRDTDDI--VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 FQ LL + +++S CSL +++EEV+ +VL Sbjct: 458 SNTNNKLLSKRLQNLHSFQVYLLRYALFNFPNAKRIIYSTCSLYPEENEEVIDEVLADIG 517 Query: 386 IPVELVPLNS---AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR-- 440 LVP W + + + P++ GFF R Sbjct: 518 NAYCLVPAKELLGNNWTNFSSKRYNCADKCLYSKPNIDFCN--------GFFVAIFDRNF 569 Query: 441 -LIQPK 445 + P+ Sbjct: 570 DVALPE 575 >gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213] gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. OVINE] gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213] gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 137 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + + + ++ + E + + D R + + Sbjct: 1 MKISPRRRARECAVQAIYSWYISQNTVEEV---ELAFVTDQDMKGVDMPYFRKLFRGVVD 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + ID L L + +LR+S ++ + DV V++ +E AK + Sbjct: 58 NVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRVVINEGIEVAK-VFGS 116 Query: 118 RHFAKLVNSILRR 130 K +N IL + Sbjct: 117 DDSHKYINGILDK 129 >gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. 8004] gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris pv. campestris str. B100] gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv. campestris str. 8004] gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv. campestris] Length = 159 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 5/127 (3%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + ++ + A D ++V L +D L L Sbjct: 30 QAVYAWQIAGGFAKQVIAQFAHEQAH---EVADLAYFESLVEGVLSNRSELDTALTPYLD 86 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 + + +LR++ ++LY DV V++ A+E AKR + H VN +L R Sbjct: 87 RGVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 145 Query: 132 SREKIEL 138 + E ++ Sbjct: 146 AVEWRKM 152 >gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum DSM 43021] gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum DSM 43021] Length = 136 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 8/135 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L + + IV R Sbjct: 1 MSARGKARRRALDILFEAEARSQDPLSVLAERLERAEPPVNE-----YTATIVEGVCRHR 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + LLR ++L++ DV + V+ V A + Sbjct: 56 ARIDELITTYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVSLA-SELSTD 114 Query: 119 HFAKLVNSILRRVSR 133 + VN ++ R + Sbjct: 115 ESPQFVNGLMARFKQ 129 >gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74] gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74] Length = 144 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V Sbjct: 1 MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRSDTQQPPVSEYTMELVEGYAAHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID V+ L R + ++R+ +++++D D V+D AVE AK + Sbjct: 61 RRIDEVIAKYSVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVELAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379] gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379] Length = 143 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +R ++ +L + + + + + +S R ++ +V L Sbjct: 1 MGLRRESRELALQMLYALDSNASVGPREMLQMFREE--QPVSDRLRLFAEELVQGVLEHR 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 P IDA + + SL R ++R++ ++++ D+ ++ A+E A+R ++ Sbjct: 59 PAIDAAIKARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIARRF-GDK 117 Query: 119 HFAKLVNSILRRVSRE 134 VN IL + Sbjct: 118 DSPAFVNGILDEIPSC 133 >gi|291440809|ref|ZP_06580199.1| hypothetical Sun-family protein [Streptomyces ghanaensis ATCC 14672] gi|291343704|gb|EFE70660.1| hypothetical Sun-family protein [Streptomyces ghanaensis ATCC 14672] Length = 120 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 13/131 (9%) Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 +LVD PC+ G +RR P+ W R +D+ A QR LL + V+ GG+V ++ CS Sbjct: 1 MLVDVPCTGLGALRRRPEARWRRRPEDLAGFAPLQRGLLRTALESVRVGGVVGYATCSPH 60 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 ++ VV +L P EL+ D+ +++ P + G Sbjct: 61 LAETRAVVADLLGQFP-DAELIDARPLLPGVPDLGEGPD----VQLWPHL--------HG 107 Query: 430 MDGFFAVALRR 440 D + +RR Sbjct: 108 TDAMYLALIRR 118 >gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae] Length = 137 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + + S+ + + + + +S D R ++N Sbjct: 1 MKPAARHRARECAVQAIYSWQLSGNSIADVEEEFLTE---QDMSNVDVTYFRELLNGVST 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 + +D + L L + +LR+++ ++ Y DV ++ A+E AK Sbjct: 58 HVSELDKKMAPYLSRQLEELGQVEKAVLRLAMFELCYRNDVPYKVAINEAIELAK-VFGA 116 Query: 118 RHFAKLVNSILRR 130 K +N L + Sbjct: 117 EESHKFINGALDK 129 >gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus J-10-fl] gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus J-10-fl] Length = 153 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 8/136 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+ + +L V ++ +L+ D S +R +V + Sbjct: 12 RHRVRIAALQILFEVDETDHAIDQVLERRLTDEPMSQESAE---FLRRLVFGAWEHRSYL 68 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDKENRH 119 D +++ + + + +LR+++ ++L DV AV++ AVE AK+ + + Sbjct: 69 DRIIEEAAPNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVINEAVELAKQF-GSDN 127 Query: 120 FAKLVNSILRRVSREK 135 ++ VN +L V Sbjct: 128 SSRFVNGVLGTVVTRY 143 >gi|15897082|ref|NP_341687.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus P2] gi|284173427|ref|ZP_06387396.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus 98/2] gi|13813255|gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus P2] gi|261601737|gb|ACX91340.1| Fmu (Sun) domain protein [Sulfolobus solfataricus 98/2] Length = 368 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 31/303 (10%) Query: 148 IPEWFKERLENFYGKERV------LAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG 201 P+W +++L + I V +E+ + Sbjct: 80 FPKWMEDKLFTLLDVNALKRKLTERWIWARINLLKTDIDKVYRMLESQNIEFEPDKDFYY 139 Query: 202 GIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV 261 I++ + SL + + D ++SI V+ + ++DL +APG K + ++ Sbjct: 140 MIKINRSSVRLSSLSIVKDFKLILHDKASSIVVEALKPEISEKLVDLSSAPGIKASLYMM 199 Query: 262 ---SGAKVTALDVSKRRLEKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPC 316 + A+ DV +RL K L R + II D+ D +L+DAPC Sbjct: 200 LTENRAETFLADVDLKRLSKEYNLLKRCGVDLRKVHIIYQDSTKNS-IIKSDKILLDAPC 258 Query: 317 SSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 SS+G I P +L R+ + I K Q+ LL + + +K +V++ CSL ++ E+ Sbjct: 259 SSSGMINNDPSILLKLRNGEKIEKFTKLQKSLLNEALK-IKSN-KLVYAVCSLFPEEGEK 316 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 V++ + P ++ R P + +GFF Sbjct: 317 VIEDY-----YEIAEKPFSNYQSGYSLFKSGKRSN---RTFPHI--------DSTEGFFI 360 Query: 436 VAL 438 L Sbjct: 361 STL 363 >gi|302143528|emb|CBI22089.3| unnamed protein product [Vitis vinifera] Length = 561 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD VL+DAPCS+ G R + + A +QR++ Q + V+PGG++ Sbjct: 415 FSPNSFDRVLLDAPCSALGL--RPRLFAGEETIESLRNHAKYQRRMFDQAVQLVRPGGVI 472 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD- 418 V+S C+++ ++E +V+ L + + L + + +G+ + P Sbjct: 473 VYSTCTINPGENEALVRYALDTYK-FLSLASQHPRAGGPGLVGCFQFSDGYTEEWLRPGE 531 Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438 + GFF Sbjct: 532 EELVQRFDPSSPLDTIGFFIAKF 554 >gi|225446803|ref|XP_002279096.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 573 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD VL+DAPCS+ G R + + A +QR++ Q + V+PGG++ Sbjct: 427 FSPNSFDRVLLDAPCSALGL--RPRLFAGEETIESLRNHAKYQRRMFDQAVQLVRPGGVI 484 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD- 418 V+S C+++ ++E +V+ L + + L + + +G+ + P Sbjct: 485 VYSTCTINPGENEALVRYALDTYK-FLSLASQHPRAGGPGLVGCFQFSDGYTEEWLRPGE 543 Query: 419 ---MLEKIDGVSSGMDGFFAVAL 438 + GFF Sbjct: 544 EELVQRFDPSSPLDTIGFFIAKF 566 >gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025] gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ + +++ D R+IV+ Sbjct: 10 MKS--ASRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDEMAEGDARSFRSIVSG 67 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R ++ L R + +++L D V++ V+ AK Sbjct: 68 AVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLESDTPPKVVINEFVDIAKA 127 Query: 114 DKENRHFAKLVNSILRRV 131 + K VN++L + Sbjct: 128 FFPDGREPKFVNAVLDHM 145 >gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato T1] gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato Max13] gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato K40] gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae pv. tomato T1] gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 165 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVATNQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALTPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|322501904|emb|CBZ36987.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 414 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 98/257 (38%), Gaps = 28/257 (10%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR 274 + F +++ D +++ V+ +VLD+CAAPGGK+ + + AL ++ Sbjct: 144 IDAFGIKAYYLLDYASAHVVEQLQVGAFDTVLDMCAAPGGKSVAVAQFLSPDGALTCNEA 203 Query: 275 RLEKLRCNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRR 324 R ++ L + + DA + F VLVDAPCSS Sbjct: 204 RADRCARLRRNLQEHVPVNYVPWRTTQRDAQTWYDPGAFSRVLVDAPCSSERHLLQQSGG 263 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 P L + + A QR LL + I + GG V+S CS+ +++ VV +VL+ + Sbjct: 264 SPLSLREWSEETTAQLAALQRMLLQRAIETCRVGGRTVYSTCSISPLENDGVVGEVLQRT 323 Query: 385 PIPVELVPLNS-------AYWKSIDMAMALSPEGWIRITPD----------MLEKIDGVS 427 V+++ +S A K+ A G P + + Sbjct: 324 RCEVKVIKTSSAAAAALVAPPKTATDASESDASGAEACAPHTPTVLGEATAYGRLLLPDT 383 Query: 428 SGMDG-FFAVALRRLIQ 443 G F L + + Sbjct: 384 CHGWGPMFFCVLEKTAE 400 >gi|302678559|ref|XP_003028962.1| hypothetical protein SCHCODRAFT_78630 [Schizophyllum commune H4-8] gi|300102651|gb|EFI94059.1| hypothetical protein SCHCODRAFT_78630 [Schizophyllum commune H4-8] Length = 779 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 101/322 (31%), Gaps = 53/322 (16%) Query: 139 LQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVML 198 P R+ R L + + V D + Sbjct: 24 WDNFINAFRQPLPVTFRVTGNRSTARTLNETIVHKHVPNLQNVVFEDKPIPPPEQIPWFP 83 Query: 199 PTGGIRLKELPESIVSLPGFAEGV-----------WWVQDASASIPVQLFGTLNNLSVLD 247 ++ + + F + Q+A + +P V+D Sbjct: 84 EGLSWQVNVPKKVLRKQEEFRKFHSFLVGETEVGNISRQEAVSMLPPLFLDVKPWHRVID 143 Query: 248 LCAAPGGKTAQLIVS-----------------GAKVTALDVSKRRLEKLRCNLDRLHLYA 290 LCAAPG KTAQL+ + A D +R L RL A Sbjct: 144 LCAAPGSKTAQLLEMLHSAPDPNAEDDLLPLPSGLLLANDSDAKRTHLLIHQSARLPSPA 203 Query: 291 EDIIEMDAFDYCPKKL----------------------FDAVLVDAPCSSTGTIRRHPDV 328 + +DA Y ++ FD +L D PCS GT+R++ + Sbjct: 204 LMVTNLDASRYPGIRVPAWVLQKGEQAGPKDEKLRRLTFDRILADVPCSGDGTLRKNLGI 263 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFV--KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 T D Q ++L + + + + G +V+S CSL+ ++E V+ + L + Sbjct: 264 WKTWTVADGNGLHSLQLRILTRAMQMLSSESGSRIVYSTCSLNPTENEAVIAEALAA-IR 322 Query: 387 PVELVPLNSAYWKSIDMAMALS 408 ELV ++ + Sbjct: 323 DFELVDASTHLPALKRRPGLKT 344 Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 8/45 (17%) Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + E +RI P + + GFF L R Sbjct: 409 PGHFPPSEDFHLERCVRIYPHLQD--------TGGFFVAVLERKA 445 >gi|254821720|ref|ZP_05226721.1| Fmu protein [Mycobacterium intracellulare ATCC 13950] Length = 171 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 47/142 (33%), Gaps = 17/142 (11%) Query: 26 TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL 85 L + R ++ RD + R +DAV+ + L L Sbjct: 1 NLALPALLRE---RGITGRDAAFATELTYGACRSRGLLDAVIGAAAGRTPQAIDPVLLDL 57 Query: 86 LRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQ----- 140 LR+ Q+L V +A V VEQA + + A VN +LR +S + Sbjct: 58 LRLGAYQLLRTRVDAHAAVSTTVEQAG-IEFDSARAGFVNGVLRTISGRDEQSWVAELAP 116 Query: 141 --------RIAGISIIPEWFKE 154 A + P W + Sbjct: 117 DPARDPIGHAAFVHAHPRWIAQ 138 >gi|156386868|ref|XP_001634133.1| predicted protein [Nematostella vectensis] gi|156221212|gb|EDO42070.1| predicted protein [Nematostella vectensis] Length = 232 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 14/216 (6%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV---SGAKVTALDVS---KRRL 276 +++ DA++ +PV + +VLD+CA+PGGKT ++ + A + + +R+L Sbjct: 8 YYLLDAASLLPVICLDVGPDSTVLDMCASPGGKTVAMMQLLSERGGLVANEPTQSRRRKL 67 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDT 334 K+ I MD + +D +LVDAPCS+ R + Sbjct: 68 RKVIQEYIPKGQTNITIRGMDGTKFGGLEPCSYDRILVDAPCSTDRHCLRSGFQTDSWSE 127 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-----PIPVE 389 K + Q KL++ + + G VV+S C++ +++ V+Q VL + I +E Sbjct: 128 KKSQKFSQLQNKLVMSALGSLTSDGRVVYSTCTMSPYENDGVIQGVLENFRHGGKNISIE 187 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 + + + G+I + P + + Sbjct: 188 RISEEQIAAWGEMFDIRRTEHGFI-VLPSVEKNWGP 222 >gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces viridochromogenes DSM 40736] gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces viridochromogenes DSM 40736] Length = 144 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ +L S +V + Sbjct: 1 MAARNTARKRAFQILFEGDQRGAEALTVLADWVRLSRADTRQPPVSEYTMELVEGYAKHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LR+ +++++D D V+D V+ AK + Sbjct: 61 KRIDELIAQYSVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFA 121 + Sbjct: 121 SPS 123 >gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS] gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS] Length = 143 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + L + +L ++ + + + N ++ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLTETPQTEENTE---FIFRLTNAVVKH 57 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +D + + + Y + +LR+++ +I++ DV ++ AVE AK N Sbjct: 58 KELLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGN 117 Query: 118 RHF 120 Sbjct: 118 SSA 120 >gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5] gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5] Length = 143 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 11/135 (8%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLE---YGDSAFRLLSQRDQILVRAIVNVT 56 M AR + L + + L + ++ + VR Sbjct: 1 MSLKRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMEDAE-GFVR----GV 55 Query: 57 LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 ID ++ V + L R + +LR++V ++L DV ++ A+E K+ Sbjct: 56 AAHRRTIDDTIEGVSTNWRLDRMAKVDRNVLRLAVYELLRTDVPVKVAINEAIELGKKY- 114 Query: 116 ENRHFAKLVNSILRR 130 + VN +L + Sbjct: 115 GSESSGAFVNGVLDK 129 >gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98] Length = 130 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 11/133 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + + ++ + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGELNPKVAVENTLDEGEETN------EFLDSLVGGFVEH 53 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID ++ L L R + +LR++V ++ Y+ ++ ++ A+E AK + Sbjct: 54 KETIDELIRQNLKKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112 Query: 118 RHFAKLVNSILRR 130 + +N +L Sbjct: 113 EESRRFINGVLSN 125 >gi|255071451|ref|XP_002499399.1| predicted protein [Micromonas sp. RCC299] gi|226514662|gb|ACO60658.1| predicted protein [Micromonas sp. RCC299] Length = 408 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 67/369 (18%), Positives = 116/369 (31%), Gaps = 31/369 (8%) Query: 95 YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 L +A+V ++ + A + + + + A + Sbjct: 48 RLKRPTHALVCETLKHVPITRLALERAGVALAPDFNARSDGVGARGAEAPHGAAADEDGF 107 Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 + A+ + + L+V A + + + + Sbjct: 108 YARLRAPEADGDAVPRRHVRVNTLKLSVDEATRRLASHRPKRDPHVSDVLVFKPGTDLHD 167 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDV 271 P G +Q ++ +P G V+D CAAPG KT L + +V A D Sbjct: 168 HPMVRSGEIVLQGKASCLPAAALGPKRGWDVVDCCAAPGNKTTHLAALVGDRGRVRAFDA 227 Query: 272 SKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHP 326 +RL++L N+ A D D + P AVL+D CS +GT Sbjct: 228 DGKRLKRLARNVSTAGAGAIVDAKRADFLEVDPLDPEYAGVRAVLLDPSCSGSGTAGTRG 287 Query: 327 DVL---------------WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D L R + A FQ + LL F + +S CS+ + Sbjct: 288 DYLIAAARGEKDDPTRGHHLRPDKRVDALAQFQLRALLHAFEFPAAE-RLSYSTCSVHEA 346 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 ++E VV+ L + + W + A+ + + D M+ Sbjct: 347 ENEAVVRAALPRAAELGWRLCAAMPEWPRRGLDGAVEGAECL-------IRADQFEDDME 399 Query: 432 GFFAVALRR 440 GFF R Sbjct: 400 GFFVAVFVR 408 >gi|220903300|ref|YP_002478612.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867599|gb|ACL47934.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 526 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 30/219 (13%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK-VTALDVSKRRLEKLRCN 282 W S + L + V D CA GGK+ L+ G D S RL L Sbjct: 336 WQSAGSQQALLALGLDRWHEPVWDACAGHGGKSTALMEWGVPVSLCTDRSFARLRGLPTQ 395 Query: 283 LDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC 342 L L DA + +LVDAPCS G + R PD+ R+ + + Sbjct: 396 CTTLGLPVPPHCLADAIRPPVGQWPGHILVDAPCSGLGVLGRRPDIR-RREPQHLAELEV 454 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 Q+ +L ++PG + + C+L+ ++E V ++L ++ + + + Sbjct: 455 LQQNMLRVLADILQPGRELAYITCTLNPAENERAVDQLLENNSD----LTIERQWQTGHS 510 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++G F LR+ Sbjct: 511 HPW------------------------LEGMFGAVLRKK 525 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 75/246 (30%), Gaps = 49/246 (19%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-------------------AFRLLS 42 K N R + L V +S L + LS Sbjct: 11 KLSCNGRTAALRALLLVDD-GLSAQQALASVLDAPVAHGASGNSREKSHTANAGRCQGLS 69 Query: 43 QRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADY 101 +D+ L +V LR R++ +L VL +Q LL ++V +L+ D V + Sbjct: 70 AQDRALCTELVYGCLRTELRLNFLLGRVLPRP-QGLPRPMQILLALAVYGLLFQDKVPSH 128 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSIL------------------------RRVSREKIE 137 AVV AVEQA+ + A++ N L R + Sbjct: 129 AVVYEAVEQARALFG-QGLARVANGALRSLQRMGEEPAQPSFYAGQSGVKKYRHGAGGTD 187 Query: 138 LLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLY--IDLTVKFDIETWAHKLNA 195 IP W E + YG E L + + + + + H + A Sbjct: 188 SFLGKCIFYSIPLWIGELWRSAYGDEAALRLMQRSFERPWAALRINARHTDGAALHAVLA 247 Query: 196 VMLPTG 201 G Sbjct: 248 APQAEG 253 >gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1] gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1] gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT] gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1] gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1] gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT] Length = 143 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + L + +L ++ + + + N ++ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVE---FIFRLTNAVVKH 57 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +D + + + Y + +LR+++ +I++ DV ++ AVE AK N Sbjct: 58 KDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAVELAKSFGGN 117 Query: 118 RHF 120 Sbjct: 118 SSA 120 >gi|327268799|ref|XP_003219183.1| PREDICTED: putative methyltransferase NSUN3-like [Anolis carolinensis] Length = 352 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 96/258 (37%), Gaps = 19/258 (7%) Query: 195 AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 I +++ +A++ + V N VLD+CAAPGG Sbjct: 103 ETSSFKCYICSTPGRFPAQRHRAGKLKEYYLLNAASLLAVLALEVENGEKVLDMCAAPGG 162 Query: 255 KTAQLIVSGAKVTAL------DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC--PKKL 306 K+ + S + L + ++A ++D + Sbjct: 163 KSIATLQCAWPGLLHCNEYDHLRSLWLKQTLESFIPESVMHAVAFSQLDGQQIGNLQPEY 222 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 FD VLVDAPCS+ + D+ + Q +LL + ++PGG +V+S Sbjct: 223 FDKVLVDAPCSNDRSWLFSSDIQQAALRLAQRKLLSAVQIQLLRSAVKALRPGGYLVYST 282 Query: 366 CSLDKQDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 C+L K ++ +V+ +L S PV+L PL S+ + A + + + P + Sbjct: 283 CTLSKAENSDVITHILNSCSNVLPVDLGPLASSVSQEFTFAPGVQS-HELLVLPQNGKAW 341 Query: 424 DGVSSGMDGFFAVALRRL 441 + L+++ Sbjct: 342 GP-------MYISKLKKI 352 >gi|302824658|ref|XP_002993970.1| hypothetical protein SELMODRAFT_431936 [Selaginella moellendorffii] gi|300138177|gb|EFJ04954.1| hypothetical protein SELMODRAFT_431936 [Selaginella moellendorffii] Length = 378 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276 +++ DA++ + + VLDLCAAPGGKT ++ + A + S R Sbjct: 132 FDYYLMDAASVLVTEALDLEVGDKVLDLCAAPGGKTLGILQQLDLLQGSLVANEPSPTRS 191 Query: 277 EKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 ++L + + + + L+D VLVDAPCSS + P L T Sbjct: 192 KRLSKVISEYVPANLRTSIRVTRRNGIKWMEHDLYDKVLVDAPCSSERHLLHDPKELGTW 251 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 A Q LL + K G +V+S CSL + +++ V+ K L + E++ Sbjct: 252 TPRRTENCAKRQLALLFAALRAAKLYGRIVYSTCSLSQLENDCVISKALEKGKLDFEII- 310 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 W + + GWI I PD+ + + + L++L Sbjct: 311 --QKQWPVGER----TEHGWI-ILPDVSQGWGPI-------YIAVLKKLST 347 >gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae 7P49H1] gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae 7P49H1] Length = 144 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRTFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus J1074] gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus J1074] gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus J1074] Length = 142 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L + +V Sbjct: 1 MAARNTARKRAFQILFEADQRSTDVLTVLADWIRHARSDTRQPPVSEYTMELVEGYAEHE 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + +L R + +LR+ +++++D D V+D AV+ AK + Sbjct: 61 RRIDELIAQYAVDWTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQLAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|241889927|ref|ZP_04777225.1| transcription antitermination factor NusB [Gemella haemolysans ATCC 10379] gi|241863549|gb|EER67933.1| transcription antitermination factor NusB [Gemella haemolysans ATCC 10379] Length = 131 Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R +L V + LLDLE + + + V + L Sbjct: 1 MKSRHELREAVFKILFQVENTELDFIELLDLEQEEISTSI-------YVNKTLTEILEKK 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L L R +Q+LR+S +ILY D+ ++ AVE +K+ E Sbjct: 54 EEIDEIISNNLKDWKLERLSKMDRQILRISAYEILYSDIPYKVSINEAVELSKKYSEKDE 113 Query: 120 FAKLVNSILR 129 K +N +L+ Sbjct: 114 SYKFINGVLK 123 >gi|332796253|ref|YP_004457753.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1] gi|332693988|gb|AEE93455.1| Fmu (Sun) domain protein [Acidianus hospitalis W1] Length = 358 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 113/302 (37%), Gaps = 35/302 (11%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLT-VKFDIETWAHKLNAVMLPTGGIRLK 206 +P W +E L + + + + ++ + +K D++ L + + Sbjct: 78 LPLWAREELSKYLDVKPLENSFRIKNT--WVRINTLKADVDKVLKSLENQGVNFEVDKDV 135 Query: 207 ELPESIVS------LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + + F +QD ++ + V+ N ++DL +APG K +Q++ Sbjct: 136 YYLIKVKNEVQLKKTKEFMNFEVIIQDKASVLTVESLEVEKNDKIIDLSSAPGTKASQIM 195 Query: 261 VSGAKVT---ALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFDAVLVDAPC 316 G DV RL++ L ++ + + I D VL+DAPC Sbjct: 196 QLGENTVELFIADVDINRLKREVDLLKKMGVDMNKVHIIHQDSTSNSMLRSDKVLLDAPC 255 Query: 317 SSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEV 376 SS+G I P ++ + ++ + QRK++ + + +++S CSL ++ E Sbjct: 256 SSSGMISNEPAIMVNLTREKVMYYSQLQRKMINEARKIIDAD-YIIYSVCSLFPEEGE-- 312 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + L L + K + + IR+ P + +GFF Sbjct: 313 -EHFLN----------LKTEKPKIVGERPYIDNVNGIRLFPHINL--------TEGFFIT 353 Query: 437 AL 438 + Sbjct: 354 KI 355 >gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B] gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B] Length = 167 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 6/133 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLR 58 S AR + L ++ + + L + ++ D Q +V + Sbjct: 19 ASRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVMEGEDGAGQAFAWELVQGVWQ 78 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 +DA++ + L R +LR+++ +IL+ D+ ++ A+E AKR Sbjct: 79 NQRELDALIVKFSKNWKLSRIAKVELTILRLALYEILHRSDIPLRVALNEAIELAKRY-G 137 Query: 117 NRHFAKLVNSILR 129 + + +N IL Sbjct: 138 DENSRNFINGILD 150 >gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae PittEE] gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae PittEE] gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae R2846] Length = 144 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRTFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp. H13-3] gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp. H13-3] Length = 165 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV+ +R Sbjct: 23 AARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVRDQ 82 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +ID ++ L L R +++ +LR +IL DV +V VE A+ E+ Sbjct: 83 TKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPVAVIVTEYVEIARAFFEH 142 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 143 DE-PKLVNAVLDR 154 >gi|169606728|ref|XP_001796784.1| hypothetical protein SNOG_06412 [Phaeosphaeria nodorum SN15] gi|111065123|gb|EAT86243.1| hypothetical protein SNOG_06412 [Phaeosphaeria nodorum SN15] Length = 857 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 43/194 (22%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV---------------- 266 Q+ + IP + VLD+CAAPG K+AQL Sbjct: 157 ISRQEVVSMIPPHFLDVKPGMVVLDMCAAPGSKSAQLAEMIHGDEEDRVRRAANGEPTGS 216 Query: 267 ----------------TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK----- 305 A D +R L + RL+ + + DA + + Sbjct: 217 GEDGDYSDDGRSTGLLIANDTDYKRAGMLVHQVKRLNFPNLIVTQHDASIFPSIELPSSG 276 Query: 306 ------LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 +D +L D PC+ GT R++P+V D + Q ++L +G+ +K GG Sbjct: 277 QKKNYLKYDRILADVPCAGDGTARKNPNVWQKWTPKDGLGLHNLQLRILFRGLQMLKKGG 336 Query: 360 IVVFSNCSLDKQDS 373 +V+S CS++ ++ Sbjct: 337 RMVYSTCSMNPVEN 350 >gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 160 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAGWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V +I DV +V VE A+ + Sbjct: 78 TRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512] Length = 160 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGATYLKADAGWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V ++L DV +V VE A+ + Sbjct: 78 VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKDVPVAVIVTEYVEIAQAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|226495531|ref|NP_001145845.1| hypothetical protein LOC100279356 [Zea mays] gi|219884681|gb|ACL52715.1| unknown [Zea mays] Length = 585 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 271 VSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 +SK L K LR + ++ FD VL+DAPCS+ G R Sbjct: 406 ISKAELRKNLRQMKNGPGRNNCSGGRVEKSKGFCPNSFDRVLLDAPCSALGL--RPRLFA 463 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + + K + +QRK+ Q + V+PGG++V+S C+++ ++E +V+ L + Sbjct: 464 GEETLESLKKHSKYQRKMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDTYKFLSL 523 Query: 390 LVPLNSAYWKSI----DMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438 + I ++ E W+R L + SS +D GFF Sbjct: 524 VSQYPKVGGPGIVGSCELFNKTYTEEWLREDEADLVQRFDPSSSVDTIGFFIAKF 578 >gi|301095411|ref|XP_002896806.1| tRNA (cytosine-5-)-methyltransferase, putative [Phytophthora infestans T30-4] gi|262108689|gb|EEY66741.1| tRNA (cytosine-5-)-methyltransferase, putative [Phytophthora infestans T30-4] Length = 691 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 102/304 (33%), Gaps = 77/304 (25%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS------------ 262 L G Q+A + +PV + VLD+CA+PG KT Q+I Sbjct: 127 LEQTDRGNIDRQEAVSMLPVLFLDVQRSHRVLDMCASPGSKTTQVIDFLLSTENGDNGEQ 186 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC-----------PKKLFDAVL 311 V A D+ K+R L L R L + + P +FD VL Sbjct: 187 SGLVIANDLDKKRAYMLVHRLSRNTLRRAVVTCGAGDTFPGLYDAKTKTLQPTNVFDRVL 246 Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 D PCS GT+R++ + + Q L L+G + ++ GI+V+S CS + Sbjct: 247 CDVPCSGDGTLRKNQTLWKEWHIGQGLTLHPTQLALALRGAALLRVNGIMVYSTCSFNPV 306 Query: 372 DSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR-----ITPDMLEKIDGV 426 ++E VV ++LR + +EL+ +++ I R L K D Sbjct: 307 ENEAVVAELLRRAGGSLELLDVSNKMPGLIARPGRSKWRVGWRSKSKSTHKGHLFKEDKH 366 Query: 427 SSG---------------------------------------------MD----GFFAVA 437 D GFF Sbjct: 367 EDDQSLHQWFDSYEALTQELRGSRVTRSMFPTEGVIADELHKTLRLIPTDQNSGGFFIAV 426 Query: 438 LRRL 441 LR++ Sbjct: 427 LRKV 430 >gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652] gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3] gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652] Length = 160 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGATYLKADAGWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V ++L DV +V VE A+ + Sbjct: 78 VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKDVPVAVIVTEYVEIAQAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans C-125] gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125] Length = 134 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 10/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +RL + L + S+ ++ + + +V+ T+ Sbjct: 1 MNRRL-SRLRAVQALYQMDVIDTSMEKAIESVLDEGEEAS------SFMSDLVSGTVTHQ 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D + L ++ R + +LR+++ ++ Y D+ + A+E AK Sbjct: 54 EELDRLYADHLQGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEAIELAKAF-GGE 112 Query: 119 HFAKLVNSILRRVSREKIE 137 + +N +L + Sbjct: 113 DAGRFINGVLSKTMEAYKP 131 >gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus ATCC 51449] gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC 51449] Length = 157 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 4/145 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR +L S+ + + + + Q +++ + L Sbjct: 1 MATRTQAREAVIGMLYAYDLGNESIIEIARSMLEEKKIKN---KQQDFAFSLLQGVIEHL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID + L R + +LR+ +ILY + +++ AVE K + Sbjct: 58 SQIDLCIAPYLKEWEFSRLGGMERAMLRLGAFEILYTETDTPVIINEAVELGKMYGGEDN 117 Query: 120 FAKLVNSILRRVSREKIELLQRIAG 144 + +N +L +S+ + + Sbjct: 118 APRFINGVLDALSKAHTKNKKSEDC 142 >gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928] Length = 145 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 6/134 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVTLR 58 AR + +L + + +L + + Q +V L Sbjct: 3 SPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTIPQVQPYAATLVEGVLE 62 Query: 59 FLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 + +ID +LD L R + +LR+ V ++L+ DV D V+D AV A+ Sbjct: 63 HVDKIDDLLDEHSEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAVSLARLMST 122 Query: 117 NRHFAKLVNSILRR 130 + + VN +L R Sbjct: 123 DES-PQFVNGLLAR 135 >gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus JCSC5402] gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus JCSC5402] Length = 130 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61 S +R + +L + ++ D+ ++ ++ +V+ + Sbjct: 2 SRTESREHAIQILFQIE------NEAHEISVEDATRFIVEPPNRDVFADELVHGVISKQN 55 Query: 62 RIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L S L R + +LR+S ++LY D + +V+ AV AK+ ++ + Sbjct: 56 ELDDKITPHLKSWALERLNKIDRIILRLSAFELLYTDAPEKVIVNEAVNLAKKFSDDESY 115 Query: 121 A 121 Sbjct: 116 K 116 >gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae PittHH] gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae PittHH] gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae 22.4-21] Length = 144 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRTFDELDPIETAILRLAVYELHFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus parainfluenzae ATCC 33392] gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus parainfluenzae ATCC 33392] Length = 145 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + E + L D+ + T+ + Sbjct: 12 SPRRRARECAVQALYSWALSGNAPEQV---ELTFVVDQDLKGVDKPYFSRLFRQTVANVE 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +D + L +L + +LR++V ++ + DV ++ A+E AK + Sbjct: 69 AVDFSMSHYLDRALDELDPIERAILRLAVYELQFEPDVPYKVAINEAIEVAKVFGADES- 127 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 128 HKYINGVLDK 137 >gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae T3T1] Length = 145 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + E + L D+ + T+ + Sbjct: 12 SPRRRARECAVQALYSWALSGNAPEQV---ELTFVVDQDLKGVDKPYFSRLFRQTVANVD 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +D + L +L + +LR++V ++ + DV ++ A+E AK + Sbjct: 69 SVDFSMSHYLDRTLDELDPIEKAILRLAVYELQFEPDVPYKVAINEAIEVAKVFGADES- 127 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 128 HKYINGVLDK 137 >gi|297195547|ref|ZP_06912945.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152840|gb|EDY65276.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486] Length = 128 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 +FD VLVD PCS G +RR P+ W R D+ A QR+LL + + V+ GG+V ++ Sbjct: 1 MFDRVLVDVPCSGLGALRRRPEARWRRRASDLEGFAPLQRELLREALKAVRVGGVVGYAT 60 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS ++ VV+ VLR P A + AL +++ P + Sbjct: 61 CSPHLAETRVVVEDVLRGRGGPAVEAEWVDARPLMPGVP-ALGDGPDVQLWPHL------ 113 Query: 426 VSSGMDGFFAVALRRLI 442 G D + LRR Sbjct: 114 --HGTDAMYLALLRRTA 128 >gi|194752568|ref|XP_001958593.1| GF11004 [Drosophila ananassae] gi|190625875|gb|EDV41399.1| GF11004 [Drosophila ananassae] Length = 441 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 19/210 (9%) Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCN 282 Q+ + + V++ +VLD+CAAPG KT + + V ALD SK R+ +R Sbjct: 212 QNLPSIVCVRVLDPQPGENVLDMCAAPGNKTTHIAELMGDQGCVMALDNSKSRVSTMRSK 271 Query: 283 LDRLHLYAEDIIEMDA----------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 L+ + + P FD +L+DAPCS G R + Sbjct: 272 LNNYRSIQLHVFDSTKAVDALATSISVPPFPCASFDRILLDAPCS--GLGNRPQLASKIK 329 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + QR+L Q + ++ GG +V+S C++ + + E +V L+ P + LV Sbjct: 330 QPKVLQSYPNIQRRLFTQAVQLLRDGGTLVYSTCTVTEPECEGIVAWALKKFP-DLRLVD 388 Query: 393 LNSAYWKSIDMAMALSPEGWI---RITPDM 419 + L + R P+ Sbjct: 389 ATPRWGGPGLPLEDLDASQSLMLQRFGPNK 418 >gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3] gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3] Length = 174 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 9/131 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTLRFLP 61 +RL + L + + ++ D L++ D+ IV + Sbjct: 37 SRLAAVQALYQMELAGEGVETVITEFANFRFDTDIEGEALAEADEAYFADIVRGVIESQR 96 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ID + L L R +L+ LLR +++ + + V+D VE AK + Sbjct: 97 DIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEYVELAKAFF-DD 155 Query: 119 HFAKLVNSILR 129 A+ VN+ L Sbjct: 156 SEARFVNAALD 166 >gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484] gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484] Length = 138 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + LL + + +V + Sbjct: 1 MGARTKARKRALDVLFEADQRGLDPVTLLAQRVAEPGTEAALPQ---YSVDLVEGVIARR 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L ++ R + LLR+ +IL+ DV D VD AVE A+ + Sbjct: 58 ERIDELLATHAHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVELARSLSTDE 117 Query: 119 HFA 121 + Sbjct: 118 SPS 120 >gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2207] gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2207] Length = 146 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 8/134 (5%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M AR + L + L+D+E ++ D L I+ Sbjct: 1 MSKPKMRQKARRLLVQALYSWDMGKT---DLIDIEAEFHVDNNMATVDTELFHEILFGVP 57 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 + + IDA + L + Q +LR+S ++L+ +DV V++ V AK Sbjct: 58 KHMTEIDAAYEPYLDRDQDQLDPVSQAILRLSTYEMLHRIDVPYKVVINEGVNLAKTFGP 117 Query: 117 NRHFAKLVNSILRR 130 F +N IL R Sbjct: 118 TDAFK-YINGILDR 130 >gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum GMI1000] gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb). transcription regulator [Ralstonia solanacearum GMI1000] Length = 161 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L + R + + ++ D+ A+++ +R Sbjct: 22 SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 78 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + + L V ++++ D+ V++ AVE AK + Sbjct: 79 TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 138 Query: 121 A 121 Sbjct: 139 K 139 >gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium tumefaciens str. C58] gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium tumefaciens str. C58] Length = 165 Score = 87.6 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV+ +R Sbjct: 23 AARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDGDTYLKADPSWFRSIVSGVVRDQ 82 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +ID ++ L L R +++ +LR +IL DV +V VE A+ E+ Sbjct: 83 TKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPVAVIVTEYVEIARAFFEH 142 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 143 DE-PKLVNAVLDR 154 >gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51] gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51] Length = 166 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L + SL + D+ F + D R I++ Sbjct: 26 AKRREARKLATQALYQWHMAQHSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPAVKD 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L + +L +LR+S +++ +DV V++ VE AK Sbjct: 83 EIDKALAPCMTIALDELDPVELAVLRLSTWELIKRVDVPYRVVINEGVELAKVFGATDGH 142 Query: 121 A 121 Sbjct: 143 K 143 >gi|307197971|gb|EFN79048.1| Putative methyltransferase NSUN5 [Harpegnathos saltator] Length = 773 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 89/238 (37%), Gaps = 18/238 (7%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 + +G +QD ++ + L +VLDLCAAPG K+ + + V A+ Sbjct: 202 HDHASYLDGQIVLQDKASCLSAHLLAPTEGSTVLDLCAAPGMKSTHLAAKLQNVGTVHAI 261 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMD--AFDYCPKKLFDAVLVDAPCSSTGTIRRHPD 327 ++ R + L+ +D H + + D + + +LVD CS +G I R Sbjct: 262 EIDSERFQTLQQQIDITHSFCVEPHNQDALTLNTKQFQNVRYILVDPSCSGSGIIDRPKQ 321 Query: 328 VLW--TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 + + Q LL + VV+S CS+ +++E+VV +VL + Sbjct: 322 SDSDGKTEPRRLHNLQSIQVYLLRYALFNFPDVKRVVYSTCSVYPEENEQVVDEVLSNVG 381 Query: 386 IPVELV---PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 LV + W + + + PD+ GFF R Sbjct: 382 DAYHLVSMKDILKEKWLNFSSPAYNCGDKCLYSKPDVDLCN--------GFFVAVFER 431 >gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51] gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2] gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2] Length = 148 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + S L + + + + + TL Sbjct: 1 MSRRL-ARETALQVLFQLEMTGESQD-LKSAIHKWADEFAVPEGSIPFAEELAEGTLTHK 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID L+ + SL R + LLR++ +IL+ D+ ++ A+E AKR + Sbjct: 59 EVIDENLEKLSEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIAKRY-GSE 117 Query: 119 HFAKLVNSILRR 130 K +N IL + Sbjct: 118 ESGKFINGILDK 129 >gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 155 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L + R + + ++ D+ A+++ +R Sbjct: 16 SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + + L V ++++ D+ V++ AVE AK + Sbjct: 73 TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 132 Query: 121 A 121 Sbjct: 133 K 133 >gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum PSI07] gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum PSI07] Length = 155 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L + R + + ++ D+ A+++ +R Sbjct: 16 SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + + L V ++++ D+ V++ AVE AK + Sbjct: 73 TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 132 Query: 121 A 121 Sbjct: 133 K 133 >gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2] gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2] Length = 196 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + + L D + + D L R IV +D Sbjct: 64 ARERAVQALYQQILNHTPVDLLDAQFMED---AFMLKVDLELFRRIVRGVSANEESLDEA 120 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 +L L Q +LR+ ++++ ++ ++ AVE AK K +N Sbjct: 121 YSPLLDRPLAEIDPIEQAILRLGAFELIHTPEIPRAVAINEAVEMAKLYGATES-HKYIN 179 Query: 126 SILRR 130 +L + Sbjct: 180 GVLDK 184 >gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC 15264] gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC 15264] Length = 176 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 8/123 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ L++ D+ +V ++ Sbjct: 37 ARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEGEPLAEADEAYFADVVRGVIQSQR 96 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA + L L R +L+ LLR ++ + DV V+D VE AK + Sbjct: 97 EIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEYVELAKAFFDEA 156 Query: 119 HFA 121 Sbjct: 157 EAK 159 >gi|148237721|ref|NP_001088881.1| putative methyltransferase NSUN4 [Xenopus laevis] gi|82179353|sp|Q5M7E3|NSUN4_XENLA RecName: Full=Putative methyltransferase NSUN4; AltName: Full=NOL1/NOP2/Sun domain family member 4 gi|56788935|gb|AAH88687.1| LOC496225 protein [Xenopus laevis] Length = 406 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 29/260 (11%) Query: 204 RLKELPESIVSLP-----GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 I P F +++ DA++ +PV + SVLDLCAAPGGKT Sbjct: 153 CFTFSRGDISRFPQSRSDCFGLLEYYLMDAASLLPVLALDIQHGHSVLDLCAAPGGKTLA 212 Query: 259 LIVSGAKVT--ALDVSKRRLEKLRCNLDRLHL------YAEDIIEMDAFDYCP--KKLFD 308 L+ + A D+S R +L L + I D + +D Sbjct: 213 LLQTENCQYLAANDLSTSRSSRLHRVLHSYVPRDQRAEHKVRITSWDGRLWGDLEASTYD 272 Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 VLVD PC++ + ++ T Q +LL+ G+ V+PGG VV+S C Sbjct: 273 RVLVDVPCTTDRHSLLEEENNIFHRIRTKQRQMLPLLQTELLVSGLRAVRPGGEVVYSTC 332 Query: 367 SLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDMLE 421 SL + +E VVQ+ L ++ V + P + + ++ + + + P + Sbjct: 333 SLSQLQNECVVQRAIELAATDHGVLVKPQDLSCFREVFKNTFNFFQDCRVGELVVPHLTA 392 Query: 422 KIDGVSSGMDGFFAVALRRL 441 F L R+ Sbjct: 393 NFGP-------MFFCKLLRI 405 >gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913] gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913] Length = 137 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR+++ + ++ + ++ + D + + Sbjct: 1 MKPAARRKARILALQAVYSWQLSGNAIADIEQQMLIENDVTKI---DVEYFKDLARGVAV 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ++D + L + +LR+S ++ + DV ++ ++E AK Sbjct: 58 NHKQLDEAVSPHLTRPFDELDEVERAILRLSSYELKFREDVPYKVAINESIELAK-MFGA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EDSHKFVNGVLDK 129 >gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE PC73] gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas albilineans] Length = 155 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 5/124 (4%) Query: 13 HLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI 72 + + ++ + A + D + +V L+ +DA L L Sbjct: 29 QAIYAWQISGGNAQHVIAQFAHEQAHEI---ADLVYFENLVEGVLKHRAELDAALVGYLD 85 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ + +LR++ ++LY +DV V++ A+E AKR + H VN +L R Sbjct: 86 RTVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRF-GSEHGHTYVNGVLDRA 144 Query: 132 SREK 135 + E Sbjct: 145 ALEW 148 >gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi 35000HP] gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP] Length = 137 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L + S+ + E + + D R ++ T Sbjct: 1 MKVSPRRRARECAVQALYSWYISQNSIEEV---ELAFVTDQDMKGVDLPYFRKLLRGTAL 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ++ ID + L + +LR++ ++ Y LDV V++ +E AK + Sbjct: 58 YVEAIDHDIRPYLDRMENDVDPIERTILRLATYELKYELDVPYKVVINEGIEVAK-VFGS 116 Query: 118 RHFAKLVNSILRR 130 K +N IL + Sbjct: 117 DDSHKYINGILDK 129 >gi|33337956|gb|AAQ13600.1|AF169972_1 MSTP077 [Homo sapiens] gi|10438378|dbj|BAB15234.1| unnamed protein product [Homo sapiens] Length = 144 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 9/144 (6%) Query: 299 FDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 ++FD VLVDAPCS+ + + Q +LL I ++P Sbjct: 1 MGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNLPLLQIELLRSAIKALRP 60 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRIT 416 GGI+V+S C+L K ++++V+ ++L S + + A S D A + + + + Sbjct: 61 GGILVYSTCTLSKAENQDVISEILNSHGNIMPMDIKGIARTCSHDFTFAPTGQECGLLVI 120 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 PD + + L++ Sbjct: 121 PDKGKAWGP-------MYVAKLKK 137 >gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2] gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2] Length = 159 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ L + + F + D+ A+++ + Sbjct: 16 SARRRSREIALQGLYEWLISGADAGTIDAHMREQDGF---DKCDRAHFDALLHGCIAEAS 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DAVL + + +L + ++ + L+V ++ AVE AK Sbjct: 73 ALDAVLARHVDRRTNQLSPVEHAVLMIGAYELTHCLEVPYRVAINEAVELAKSFGGTDG- 131 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 132 HKYVNGVLDK 141 >gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium IMCC2047] Length = 153 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 NAR ++ L + + LL++E + + D +++ + Sbjct: 19 RRNARRLAMQALYQWEL---ASSSLLEIEREFREDNNMQKVDADYFTELLHRVPTLKTEL 75 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122 D + +L + +LR+S ++L DV +++ VE AK K Sbjct: 76 DEQIKPLLDRDISELTPVELTILRLSGYELLKRPDVPYRVIINEGVELAKTFGATDG-HK 134 Query: 123 LVNSILRR 130 VN IL + Sbjct: 135 YVNGILDK 142 >gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum CMR15] Length = 155 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L + R + + ++ D+ A+++ +R Sbjct: 16 SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + + L V ++++ D+ V++ AVE AK + Sbjct: 73 TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELAKTFGGVEGY 132 Query: 121 A 121 Sbjct: 133 K 133 >gi|227904097|ref|ZP_04021902.1| tRNA/rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|227868116|gb|EEJ75537.1| tRNA/rRNA methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 280 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 11/123 (8%) Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R++P+ + D ++ Q+ +L + I +KPGG +++S C+ ++ EE+V + Sbjct: 1 MFRKNPEAIDYWSQDYVLTCQTRQKDILNEAIKMLKPGGSLIYSTCTFSPEEDEEIVSWL 60 Query: 381 LRSSPIPVELVPLNSAYWKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVA 437 + + +N A +R P +A Sbjct: 61 VNDHDFSILDPHINDPRISLGHPEWADGNADLTKTLRFWPQDGIGEGQ--------YAAI 112 Query: 438 LRR 440 L++ Sbjct: 113 LQK 115 >gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2] gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2] Length = 163 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 10/142 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNV 55 MK ARL + L + + L +L + + + D L R +V Sbjct: 15 MKKS-AARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVEGVEFPEADVRLFRTVVEG 73 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAK 112 L RID ++D L L R + L+ +LR ++ DV V+ V A Sbjct: 74 VLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVITEYVNVAG 133 Query: 113 RDKENRHFAKLVNSILRRVSRE 134 +R +VN++L ++ + Sbjct: 134 AF-LDRDETGMVNAVLDALAHD 154 >gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551] gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2] gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum IPO1609] gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957] gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551] gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum MolK2] gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia solanacearum IPO1609] gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional antiterminator) [Ralstonia solanacearum CFBP2957] Length = 155 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L + R + + ++ D+ A+++ +R Sbjct: 16 SARRRARELALQGLYQWLLNRNDPGVVEAHL---HDAQGFNKADRAHFDALLHGAIREEA 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + + L V ++++ D+ V++ AVE AK + Sbjct: 73 TLTESFTPFLDRPVAELSPVERAALLVGAYELVHCIDIPYKVVINEAVELAKTFGGVEGY 132 Query: 121 A 121 Sbjct: 133 K 133 >gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli] gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli] Length = 148 Score = 87.3 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 5/140 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K+ AR + + + + + + A + D IV L Sbjct: 11 KAKQRARRFAVQAIYQWQLTQETFSVIQTKFL---AQEEMKSVDTAYFTLIVQGILNDHE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D L + L + +LR+ ++L ++ +++ A+E AK + Sbjct: 68 LLDRYLQSFVDRPLCQLDCVEWAILRLGTYELLNCSEIPYKVILNEAIELAKMFGATDSY 127 Query: 121 AKLVNSILRRVSREKIELLQ 140 VN IL R++ + + Sbjct: 128 K-YVNGILHRIAEKNRAIDC 146 >gi|218201052|gb|EEC83479.1| hypothetical protein OsI_28993 [Oryza sativa Indica Group] Length = 259 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 8/159 (5%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ FD VL+DAPCS+ G R + + A +QR Sbjct: 96 PGRNNCSGGRVENSKGFLPNSFDRVLLDAPCSALGL--RPRLFAGEETLESLRNHATYQR 153 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++ Q + V+PGG++V+S C+++ ++E +V+ L I + Sbjct: 154 RMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDKYKFLSLGSQHPKVGGPGIVGSF 213 Query: 406 ALS----PEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438 LS E W+ L + SS +D GFF Sbjct: 214 ELSTKKYTEEWLTKHESQLVQRFDPSSTLDTIGFFIAKF 252 >gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii 12D] gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D] Length = 155 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ L + R +++ D+ + ++ D+ A+++ +R Sbjct: 16 SARRRARELALQGLYQWLLNRND-PGVVEAHLQDA--QGFNKADRAHFDALLHGAIREET 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + + L V ++++ D+ V++ AVE K + Sbjct: 73 TLTEAFTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTKTFGGVEGY 132 Query: 121 A 121 Sbjct: 133 K 133 >gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941] gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941] Length = 139 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 9/123 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + +L L+ + L +V R Sbjct: 1 MSRRT-ARKQAFFILYQSDVTGSPAEPLIGRW--RAYRGELED----YAERVVRGVERER 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 R+DAVLD V + R + +LR+++ ++L+ DV V+ AVE AK Sbjct: 54 ERLDAVLDGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELAKGFSGEE 113 Query: 119 HFA 121 + Sbjct: 114 APS 116 >gi|297182205|gb|ADI18376.1| tRNA and rRNA cytosine-c5-methylases [uncultured actinobacterium HF4000_04C13] Length = 243 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 97/259 (37%), Gaps = 20/259 (7%) Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + +E L + + ++ G+ + A+ V Sbjct: 1 MPDWLLERLVTDLGSDDALAALAAMNRPARAVARDDGYHQDRASQMVAA---LVVEDLDP 57 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 + VLDLCAAPGGK + +GA V A D+ RL + N +RL + Sbjct: 58 SGEVVLDLCAAPGGKATAMAAAGASVVAADLRPSRLGLVADNAERLGHDMALVAADGRLP 117 Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 FD VLVDAPC+ G +RR D W D+ + A Q LL V+PGG+ Sbjct: 118 PFRPGAFDRVLVDAPCTGLGVLRRRADARWRTGPADVEELADLQVDLLTAAAGLVRPGGL 177 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 + +S C+L ++ V ++ R + V PL + + D G + + P L Sbjct: 178 LFYSVCTLTSAETSGVDRRF-REATGLVSGPPLGAPWRPYGDDGA-----GGL-LLPQDL 230 Query: 421 EKIDGVSSGMDGFFAVALR 439 + R Sbjct: 231 DSEG----------MAVFR 239 >gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii KSM-K16] gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16] Length = 133 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 10/140 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + ARL + L + I++ ++ D +V+ TL Sbjct: 1 MNRRV-ARLRAVQTLYQLTLIDINVDKAIENTLNDEEEPS------EFYNTLVHGTLEHQ 53 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID L L +L R + + + R+ + ++LYL D+ ++ A+E AK Sbjct: 54 DEIDGYLSENLKGYTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELAKAFGGTD 113 Query: 119 HFAKLVNSILRRVSREKIEL 138 + +N +L ++ Sbjct: 114 -AGRFINGVLSNSYDMAMKN 132 >gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT 894] Length = 160 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADAAWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V +I DV +V VE A+ E+ Sbjct: 78 VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFFED 137 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 138 DE-PKLVNAVLDR 149 >gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 160 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + L + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDGATYLKADVAWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V +I DV +V VE A+ + Sbjct: 78 VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative symbiont of Hydra magnipapillata] Length = 177 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + R ++ + S+ D + A+++ + Sbjct: 33 SNRTRAREFALQGLYQSLVGRNAVDDIDPFT---RDLAGFSKADAVHFDALLHGCVAEAE 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA++ L + ++ + ++ + LDV V++ +E AK Sbjct: 90 ALDALITPALDRPMSEISPIEHAIMWIGAYEMKHCLDVPWRVVLNECIELAKEFGGTDGH 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae 86-028NP] gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP] Length = 144 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTVENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRAFDELDPIETAILRLAVYELCFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 166 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + + + D RAI+ Sbjct: 16 NKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAILAGV 75 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 + ID ++ L L R +L+ +LR V +++ DV +V V+ AK Sbjct: 76 VENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDIAKA 135 Query: 114 DKENRHFAKLVNSILRR 130 KLVN++L R Sbjct: 136 FY-EEDEPKLVNAVLDR 151 >gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria AMMD] gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10] gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5] gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria MC40-6] gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD] gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10] gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5] gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6] Length = 145 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK +R +++ L + + + G + + D+ L+ AI++ +R Sbjct: 1 MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGY---DKADKELLDAILHGVIR 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + L L + + + +L ++ ++ + + +++ AVE AK + Sbjct: 58 EHATLIEALTPSLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGS 117 Query: 118 RHFA 121 + Sbjct: 118 DGYK 121 >gi|154343347|ref|XP_001567619.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134064951|emb|CAM43062.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 423 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 113/312 (36%), Gaps = 45/312 (14%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDAS 229 ++ + D + + E + + + + + + F +++ D + Sbjct: 100 NSAEASSMADRGIHVNNEETLREEEVLAAASSDPLHQNGIIAKPPIDAFGIKAYYLLDYA 159 Query: 230 ASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY 289 ++ V+ +VLD+CAAPGGK+ + + AL ++ R ++ L + Sbjct: 160 SAHVVEQLQVGAFDTVLDMCAAPGGKSIAIAQFLSPDGALTCNETRADRCARLRRNLQEH 219 Query: 290 ------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH----PDVLWTRDTDDIVK 339 + DA + + F VLVDAPCSS + + P + V+ Sbjct: 220 VPVNYVPWRTTQRDAQTWYDPQTFSRVLVDAPCSSERHLLQQSGGLPLSCREWSEETTVQ 279 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 A QR LL + I GG +V+S CS+ +++ VV + L+ + V +V +S+ Sbjct: 280 LAALQRVLLQRAIETCCVGGRIVYSTCSISPLENDGVVGEALQRTRCKVRIVKTSSSVTA 339 Query: 400 SIDMAMAL--SPEG--------------------------WIRITPDMLEKIDGVSSGMD 431 + + ++ + G + PD Sbjct: 340 AAESSVTPSTTANGAGESDASCAGACVSPTPTVLGEATAYGRLLLPDTCHGWGP------ 393 Query: 432 GFFAVALRRLIQ 443 F L ++ + Sbjct: 394 -MFFCVLEKMAE 404 >gi|71654742|ref|XP_815984.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881082|gb|EAN94133.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 339 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 97/284 (34%), Gaps = 30/284 (10%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + + + L G + + F ++ D Sbjct: 51 LWNRFCQLPFAKVMANMKRMDEESLLQVFRCQDGC------EVAPPASDAFNVKAYYPLD 104 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR------RLEKLRC 281 ++++ V+ VLD+CAA GG + + + AL V++ RL + Sbjct: 105 YASALVVEQLEVGAFDRVLDVCAAFGGNSIGIAQFLSADGALTVNEPNHERSARLRRNIR 164 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRH----PDVLWTRDTDDI 337 + I + +A + ++ VLVDAPCS+ + P Sbjct: 165 EYIPSNYVPVTITQRNAETWYAPSMYHRVLVDAPCSAERYFLQRDGGAPVSPKMWTEQTS 224 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 ++ + LLL+ + +PGG VV+S SL +++ VV+ LR + VE+ P Sbjct: 225 LELSRRGCVLLLRALETCRPGGRVVYSTRSLSPLENDGVVEDALRRTRCQVEVHPTTLCN 284 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + PD + F + ++ Sbjct: 285 MGEKTRYGHI-------VLPDTAGGFGPL-------FCCVIHKV 314 >gi|255722339|ref|XP_002546104.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240136593|gb|EER36146.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 485 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 33/267 (12%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQL---FGTLNNLSVLDLCAAPGGKTAQLIVS- 262 E I S + G +QD ++ P + + V+D CAAPG KT Sbjct: 194 HPREKITSTEAYKLGEIIIQDRASCFPSHILNSDPKDIHTQVIDACAAPGNKTTHAAAHL 253 Query: 263 ---GAKVTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDA--VLVD 313 + V A + +R++ L+ ++ I D P D ++VD Sbjct: 254 PNSESVVYAFERDSKRVQILKTMCEKATGKNKKKLIQITHADFTTTKPDDFADVTGMVVD 313 Query: 314 APCSSTGTIRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPGGI-VVFSNC 366 CS +G R + + + K + FQ ++ +SF P VV+S C Sbjct: 314 PSCSGSGIFGRALEDSYNEQESETVNTERLAKLSGFQFAIMKHALSF--PSARKVVYSTC 371 Query: 367 SLDKQDSEEVVQKVL-----RSSPIPVELVPLNSAYWKSIDMAMAL-----SPEGWIRIT 416 S+ Q++E VV +L R + + W+ PE ++ Sbjct: 372 SVHVQENERVVIDLLSDPEVRKRGWTLATRDVVIPKWERRGFEDEFVKLTRDPEECKKLA 431 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + + G GFFA R ++ Sbjct: 432 GGCV-RANPKVDGGIGFFAACFVRQVE 457 >gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii 12J] gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J] Length = 155 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + R +++ D+ + ++ D+ A+++ +R + Sbjct: 21 ARELALQGLYQWLLNRND-PGVVEAHLQDA--QGFNKADRAHFDALLHGAIREETTLTEA 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 L + + L V ++++ D+ V++ AVE K + Sbjct: 78 FTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTKTFGGVEGYK 133 >gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 134 Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + ++ V + + D L++++Q ++ TL Sbjct: 2 SRRKARETAFKVVFQVDQVQADAKKAFDYLVLHDK---LAEKNQGFSWDLIQGTLEKQAE 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID ++ +L R + ++RV+ +ILYL D +D A+E AK+ + Sbjct: 59 IDQMIASYSREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIAKKY-GDEGS 117 Query: 121 AKLVNSILRR 130 VN+IL + Sbjct: 118 GSFVNAILDK 127 >gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001] gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001] Length = 144 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G F + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ ++D+ V++ AVE AK Sbjct: 58 SEALSADIAPCLDRPIDQLSPVERAVLLVAAFELKNHIDIPYRVVINEAVELAKTFGGAD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|224044197|ref|XP_002190386.1| PREDICTED: NOL1/NOP2/Sun domain family, member 3 [Taeniopygia guttata] Length = 401 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 17/231 (7%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL-----DVSKRR 275 +++ +A++ +PV + +VLDLCAAPGGK+ ++ D+ R Sbjct: 175 KDYYLLNAASLLPVLALEVKDGEAVLDLCAAPGGKSVAILQCACPGHFHCNEYDDLRSRW 234 Query: 276 LEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTI-RRHPDVLWT 331 LE+ + L + ++D + +D VLVDAPCS+ + Sbjct: 235 LEQTIESFIPAPLINLITVSKLDGRQIGDLQPEFYDKVLVDAPCSNDRSWLFSADPQQAV 294 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + + Q +LL + ++PGG +V+S C+L + ++ +V+ +L S + + Sbjct: 295 LRLMQRKELSSLQFQLLRSAVQALRPGGSLVYSTCTLSRAENSDVINLILNSCRNVMPVD 354 Query: 392 PLNSAYWKSIDMAMALS-PEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 A S + + + + P+ + L+++ Sbjct: 355 LSGMARGVSQEFTFLSGMQQHELLVLPEKGRAWGP-------MYVAKLKKV 398 >gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666] gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666] Length = 187 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 5/133 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + R + F + D A+++ + Sbjct: 46 SARTRAREFALQALYQHLVGRNDADSIDAFTRDLVGFH---KADSAHYDALLHGCIEGAS 102 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DAV+ +L + +L + + LDV V++ +E AK Sbjct: 103 ALDAVITPLLDRPMAEISPVEHAVLWMGAYEFRQCLDVPYRVVINECIELAKAFGGTDG- 161 Query: 121 AKLVNSILRRVSR 133 K VN +L +++ Sbjct: 162 HKYVNGVLHKMAP 174 >gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus DSM 2380] gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380] Length = 156 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 19/154 (12%) Query: 1 MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-------------LSQRD 45 M SGM R ++ ++ S+ LL + + FR +++ Sbjct: 1 MASGMRRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPV 59 Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAV 103 + +V L +ID ++ + SL R +LR++ ++L +LDV + Sbjct: 60 REFAEDLVRGVAENLEKIDGLIGEFSTNWSLERMARVDLAILRMATYELLGHLDVPVSVI 119 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 ++ AVE KR + VN IL R+SR Sbjct: 120 INEAVEIGKRY-GTKETPSFVNGILDRISRTCRP 152 >gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42] gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42] Length = 160 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGATYLKADAGWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V ++L DV +V VE A+ + Sbjct: 78 VRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKDVPVAVIVTEYVEIARAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2] gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2] Length = 136 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR+++ + + D+E +S+ D + + Sbjct: 1 MKPAARRKARILALQAIYSWQVSG---NAIADIEQQMLLENDISKIDVEYFKDLACGVAV 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +D +L L + + +LR+S ++ + DV ++ +E AK Sbjct: 58 QHKVLDVILSPHLARPYEDIDFVEKAILRLSAYELKFREDVPYKVAINEGIELAK-MFGA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EDSHKFVNGVLDK 129 >gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas haloplanktis ANT/505] gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas haloplanktis ANT/505] Length = 136 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 7/137 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR+++ + + D+E +++ D + + Sbjct: 1 MKPAARRKARILALQAVYSWQISG---NLIADIEQQMLIETDVTKIDVEYFKDLATGVAV 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ++D + L + +LR+S ++ + DV ++ +E AK Sbjct: 58 NYKQLDEAVSPHLTRPFDDLDMVERAILRLSSYELKFREDVPYKVAINEGIELAK-IFGA 116 Query: 118 RHFAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 117 EDSHKFVNGVLDKAVKH 133 >gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae Rd KW20] gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae 22.1-21] gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae 3655] gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae PittII] gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae PittGG] gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae RdAW] gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae F3047] gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae F3031] gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus aegyptius ATCC 11116] gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd KW20] gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae 22.1-21] gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae 3655] gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae PittII] gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae PittGG] gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae RdAW] gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae R2866] gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae F3031] gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae F3047] gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus aegyptius ATCC 11116] Length = 144 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22] gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22] Length = 144 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L + +V Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVSEYTMQLVEGYSEHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LR+ +++++D D V+D V+ AK Sbjct: 61 RRIDELIAQYSVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQLAKEF-STD 119 Query: 119 HFAKLVNSILRR 130 VN +L R Sbjct: 120 DSPSFVNGLLGR 131 >gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida subsp. multocida str. Pm70] gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70] Length = 144 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S + E A + L D R + T + Sbjct: 11 SPRRRARECAVQALYSWYVSQNSPAEI---ELNFMAEQDLKGVDTAYFRRLFRQTAENVD 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ L + + +LR++V ++ + LDV V++ A+E AK Sbjct: 68 AVDNIMIPYLDREVSELDPIEKAILRLAVYELKFELDVPYKVVINEAIEVAK-VFGAEDS 126 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 127 HKYVNGVLDK 136 >gi|242078877|ref|XP_002444207.1| hypothetical protein SORBIDRAFT_07g014990 [Sorghum bicolor] gi|241940557|gb|EES13702.1| hypothetical protein SORBIDRAFT_07g014990 [Sorghum bicolor] Length = 585 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 9/175 (5%) Query: 271 VSKRRLEK-LRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 +SK L K LR + ++ FD VL+DAPCS+ G R Sbjct: 406 ISKAELRKNLRRMKNGPGRNNCSGGRVEKSKGFYPNSFDRVLLDAPCSALGL--RPRLFA 463 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + + A +QR++ Q + V+PGG++V+S C+++ ++E +V+ L + Sbjct: 464 GEETLESLKNHAKYQRRMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDTYKYLSL 523 Query: 390 LVPLNSAYWKSIDMAMALS----PEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438 + I + L E W+R L + SS +D GFF Sbjct: 524 VSQYPKVGGPGIVGSCELFNMTYTEEWLREDEAELVQRFDPSSSVDTIGFFIAKF 578 >gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM 2831] gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM 2831] Length = 197 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL L + + L + + + R ++ T Sbjct: 23 SPRSGARLAVVQALYEMDISGKGVLDALAEFEAFWIGQEVDGIAHPPAETAFFRDLLRGT 82 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 + ID LD L L R + L+ +LR ++++ DV A + V+ A Sbjct: 83 VEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAISEYVDVAHS 142 Query: 114 DKENRHFAKLVNSILRR 130 LVN++L R Sbjct: 143 FY-TADEPGLVNAVLDR 158 >gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31] gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31] Length = 153 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD--------SAFRLLSQRDQILVRAIV 53 + ARL L + + + + ++ L+ D+ + Sbjct: 8 QPRSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELA 67 Query: 54 NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110 + +D + L L R + + +LR ++++ DV V+D VE Sbjct: 68 KGVVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEI 127 Query: 111 AKRDKENRHFAKLVNSILR 129 AK E + +N L Sbjct: 128 AKSFFEGPE-SGFINGALD 145 >gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA] Length = 155 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L + R +++ D+ + ++ D+ A+++ +R + Sbjct: 21 ARELALQGLYQWLLNRND-PGVVEAHLQDA--QGFNKADRAHFDALLHGAIREETTLTEA 77 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 L + + L V ++++ D+ V++ AVE K + Sbjct: 78 FTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVELTKTFGGVEGYK 133 >gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae ATCC 25976] gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae ATCC 25976] Length = 163 Score = 86.9 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L + S+ + E + ++ D R ++ T+ Sbjct: 27 MKVSPRRRARECAVQALYSWYVSQNSVEEV---ELSFVTDQDMNGVDLPYFRKLLRSTVL 83 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ++ ID L L + + +LR+S ++ Y LDV V++ +E AK + Sbjct: 84 YIEAIDGALRPFLDRAEDEVDPIERTILRLSAYELKYELDVPYKVVINEGIEVAK-VFGS 142 Query: 118 RHFAKLVNSILRR 130 K +N +L + Sbjct: 143 GDSHKYINGVLDK 155 >gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum bv. viciae 3841] gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum bv. viciae 3841] Length = 160 Score = 86.9 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV+ +R Sbjct: 18 AARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDGETYLKADAAWFRSIVSGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 R+D ++ L +L R +++ +LR V +I DV +V VE A+ + Sbjct: 78 VRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKDVPVAVIVTEYVEIAQAFF-D 136 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 137 DDEPKLVNAVLDR 149 >gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 144 Score = 86.9 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K+ AR + L + + +++ + + DQI ++ + L Sbjct: 6 KTRRKAREYAVQALYSWQISKNDIYDVINHFKKNKTINEI---DQIYFYELIIGITKNLK 62 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ L ++ + +LR+S ++ D+ ++ ++E AK + Sbjct: 63 YLDELMRPYLSRTIQELGQIEKAILRISFFELDKRYDIPFKVTINESIELAK-LFGAKDS 121 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 122 HKFINGVLDK 131 >gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506] gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506] Length = 160 Score = 86.5 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 9/132 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + L +L + D L R IV +R Sbjct: 17 AARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDEIASADVNLFRDIVGGVVREQ 76 Query: 61 PRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ID VLD L+ L R + L+ +LR ++ DV VV V A + Sbjct: 77 LSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPDVPARVVVAEYVNVAAAF-LD 135 Query: 118 RHFAKLVNSILR 129 R +VN++L Sbjct: 136 REETGMVNAVLD 147 >gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus Ueda107] gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus Ueda107] Length = 168 Score = 86.5 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 6/131 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L SL + D+ +S+ D +++ L Sbjct: 25 ATRRMARHYAMQALYQWHMAGSSLNAIEAEFRTDN---DMSKVDVDYFHELLHGVPEQLS 81 Query: 62 RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119 ++ L SL + LLR++ ++ +DV V++ AV AK+ Sbjct: 82 GLEEQFQPFLVDRSLEELDAITRALLRMATYELKNRIDVPYKVVINEAVSLAKKF-GAED 140 Query: 120 FAKLVNSILRR 130 K +N +L + Sbjct: 141 SHKFINGVLDK 151 >gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp. HTCC2999] Length = 145 Score = 86.5 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + ++ + E + +S+ D + ++ T + Sbjct: 6 MKPAARRKARELALQGIYSWQMNGNTIESV---ELHLATTNDMSKIDLAFFQELLRDTAK 62 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 + +D + L + +LR++ ++ +DV V++ A+E AK Sbjct: 63 KVVELDVAIKPYLGRLPEELDPIEKAILRLATLELTQRIDVPYKVVINEAIELAKSF-GA 121 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 122 EESHKFVNGVLDK 134 >gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894] gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894] Length = 138 Score = 86.5 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 6/132 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR ++ LL ++R LL + IV + Sbjct: 1 MGARTKARKRAADLLFEAEQRRWDAVRLLRDRIETPVSESPVPQ---YAADIVEGVVAHR 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L+ ++ R + LLR+ +IL+ DV D +D AV+ A Sbjct: 58 ERIDELLETYSNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAVDLA-AQLSTD 116 Query: 119 HFAKLVNSILRR 130 VN +L R Sbjct: 117 DSPSFVNGLLGR 128 >gi|68475292|ref|XP_718364.1| hypothetical protein CaO19.10135 [Candida albicans SC5314] gi|68475493|ref|XP_718269.1| hypothetical protein CaO19.2604 [Candida albicans SC5314] gi|46440029|gb|EAK99340.1| hypothetical protein CaO19.2604 [Candida albicans SC5314] gi|46440128|gb|EAK99438.1| hypothetical protein CaO19.10135 [Candida albicans SC5314] Length = 498 Score = 86.5 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 71/435 (16%), Positives = 140/435 (32%), Gaps = 61/435 (14%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + A+V TL++ ID + + S + ++++ + ++ + Sbjct: 74 IFALVYSTLKYKEYIDVI----VKKSKIQHDLQIKKV---------KMSNELLCLLVHDL 120 Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + + + + ++ L +R + E + ++L + I Sbjct: 121 LFSSKGRIQSGKHPMKDAFLSNKTRLQAEFTKL---KLKYKVKSVDQLPTKEADDDETPI 177 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--------------RLKELPESIVS 214 I+ + ID+ + + +L V E I S Sbjct: 178 RWFRINTIKIDIDRFYTKHPFFKQLQPVSSIDEITETGIIYSDDYIPNLFGVHPREKITS 237 Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLN---NLSVLDLCAAPGGKTAQLIVS----GAKVT 267 + G +QD ++ P + + V+D CAAPG KT + V Sbjct: 238 TEAYRLGEIIIQDRASCFPSHILNADPEDVHTQVIDACAAPGNKTTHAAAHLPNSDSVVY 297 Query: 268 ALDVSKRRLEKLRCNLDR----LHLYAEDIIEMDAFDYCPKKLFDAV--LVDAPCSSTGT 321 A + +R++ L+ ++ + D P+ D ++D CS +G Sbjct: 298 AFERDSKRVKILKTMCEKATGKTKKKLIQVTHADFTTTKPEDFPDVTGLVIDPSCSGSGI 357 Query: 322 IRRHPDVLWTRDTDDI------VKSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSE 374 R + + + K A FQ ++ +SF P VV+S CS+ Q++E Sbjct: 358 FGRALEDSHNEEEIENVNTERLNKLAGFQFAIMKHALSF--PSARKVVYSTCSIHAQENE 415 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI---------TPDMLEKIDG 425 VV +L + L E +I+I + + Sbjct: 416 RVVVDLLSDPEVNRRGWKLADREIVLPKWDRRGFEEEFIKISRDPKECARLAGGCVRANP 475 Query: 426 VSSGMDGFFAVALRR 440 G GFF R Sbjct: 476 KEDGGIGFFTACFVR 490 >gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N] gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N] Length = 148 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ + +++ D RAIV+ Sbjct: 1 MKS--ASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDEMAEGDAKSFRAIVSG 58 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R ++ L R + +++L + V++ V+ AK Sbjct: 59 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESETPPKVVINEFVDIAKA 118 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 119 FFPEGREPKFVNAVLDHM 136 >gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales bacterium Y4I] gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales bacterium Y4I] Length = 160 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 7/135 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLR 58 ARL + L + + + ++ +++ D + R +V + Sbjct: 17 RSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDEMAEGDTKVFRKLVREAVN 76 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + RID + D L + R +L+ L R + A++ D V++ V+ A+ Sbjct: 77 YQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSDTPPKVVINEFVDIARAFFP 136 Query: 117 NRHFAKLVNSILRRV 131 K VN++L + Sbjct: 137 EGKEPKFVNAVLDHM 151 >gi|329770465|ref|ZP_08261844.1| transcription antitermination factor NusB [Gemella sanguinis M325] gi|328836320|gb|EGF85986.1| transcription antitermination factor NusB [Gemella sanguinis M325] Length = 131 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 8/130 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R +L V + LL+ E D + V ++ Sbjct: 1 MKSRHELRESVFKILFQVENTDLDYRELLEFEVDDVSGSE-------YVTRTLDDIFAKK 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID ++ L L R +Q+LR+S +IL+ D+ ++ AVE +K+ E Sbjct: 54 EQIDEIISNNLKGWKLERLSKMDRQILRISTYEILFTDIPYKVSINEAVELSKKYSEKDD 113 Query: 120 FAKLVNSILR 129 K +N +L+ Sbjct: 114 SYKFINGVLK 123 >gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter lacuscaerulensis ITI-1157] gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter lacuscaerulensis ITI-1157] Length = 160 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + + + +++ + + D L R +V+ Sbjct: 16 MKS--AARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDEMLEGDSALFRKLVDD 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + D L + R +L+ L R + A++ D V+ V+ A+ Sbjct: 74 AVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQSDTPPKVVITEFVDVARA 133 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 134 FFPEGKEPKFVNAVLDHM 151 >gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195] gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195] Length = 143 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + L + +L ++ + + + N ++ Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTETPQTEENAE---FIFRLTNAIVKH 57 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +D + + + Y + +LR+++ +I++ DV ++ AVE AK N Sbjct: 58 KDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAVELAKSFGGN 117 Query: 118 RHF 120 Sbjct: 118 SSA 120 >gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003] gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003] Length = 144 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G F + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ ++D+ V++ AVE AK Sbjct: 58 SEALSADIAPCLDRPIDQLSPVERAVLLVAAFELKNHIDIPYRVVINEAVELAKTFGGAD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae NT127] gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae NT127] Length = 144 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTVENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia succiniciproducens MBEL55E] gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E] Length = 143 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + + E + + D R + T+ +P Sbjct: 10 SPRRRARECAVQALYSFQISQNPVETV---ELSFVTDQDMKGVDMPYFRKLFRQTVENIP 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D+ + L S + +LR++V ++ Y LDV V++ A+E AK Sbjct: 67 SVDSTMAPYLDRSANELDPIEKAILRLAVYELKYELDVPYKVVINEAIEVAKTF-GAEDS 125 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 126 HKYINGVLDK 135 >gi|257215910|emb|CAX83107.1| Putative methyltransferase C17D4.04 [Schistosoma japonicum] Length = 367 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 47/229 (20%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-----------------------L 259 Q+A + +P L ++ ++LDLCAAPG K+AQ Sbjct: 139 ISRQEAVSMLPPLLLDIRSHHTILDLCAAPGSKSAQLVELLHSDAEAILSKSDSESAPKY 198 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---------------- 303 I V A DV +RR + + RL I + DA + Sbjct: 199 IEPTGMVIANDVDQRRCYMMVHQVKRLQSPCVVITQEDASCFPRLYLTLSSDEMTGQRDL 258 Query: 304 -KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK-PGG-- 359 + +FD VL D PCS GT+R++PD+ + + Q ++L +G+ ++ P G Sbjct: 259 RQLVFDRVLADVPCSGDGTLRKNPDLWLRWSPNLGIGEHPLQCRILKRGLELLRDPVGDS 318 Query: 360 ----IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 +V+S CS + ++E VV +L++ V L+ D + Sbjct: 319 TNYSRLVYSTCSFNPVENEAVVASILQACRGAVRLIEPELLECVLPDPS 367 >gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae 10810] Length = 144 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTAEQV---ELAFVLDQDMEGVDKPYFRKLFRQTIENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYIDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91] gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91] Length = 167 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ + + + + S+ D ++ L ++A Sbjct: 26 SRELALQGIYQWRLAGGNAQEI---DLQLQQVNFYSKADGSYFSDLLQGVLEHSRDLEAQ 82 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L L +L + ++++ ++ A+++ A+E AK K VN Sbjct: 83 IQAYLDRQLAELSPVECSILLIGTYEMVHHPEIPCRAIINEAIELAKSYGGTDG-HKYVN 141 Query: 126 SILRR 130 +L + Sbjct: 142 GVLDK 146 >gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799] gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799] Length = 136 Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + D+E+ + D R ++ + Sbjct: 1 MKPSERRKARRLAVQAIYSWQMSG---NAVADIEHEFLTEQDTKGADLGYFRELLVGVVS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +DA L L + +LR++ ++L+ DV V++ A+E AK Sbjct: 58 QSSNLDARLKPNLARLVEEVDQLELAILRLAAFELLHRDDVPYKVVINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EESHKFVNGVLDK 129 >gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum SL003B-26A1] gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum SL003B-26A1] Length = 171 Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + SLT +++ + L + D++ + +V Sbjct: 17 NKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLGKELDGAQYREADELWFKDVVKGV 76 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 + ++D + L L R L+ +LR ++L DV ++ ++ AK Sbjct: 77 VEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLRRRDVPARVIISEYIDVAKA 136 Query: 114 DKENRHFAKLVNSILRRVSR 133 +LVN +L R++ Sbjct: 137 FYAEDE-PRLVNGVLDRLAH 155 >gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 137 Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + S+ L +E +A Q R I + Sbjct: 1 MSARTKARKRALDVLYVADIRGESIPATLAVEQQRAAAEPDRQASWQYAREIAEGFVAHQ 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID +++ +L R + +LR+ + +IL+ DV + +V+ A Sbjct: 61 DEIDELIETYSVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVDLA-SSLSTD 119 Query: 119 HFAKLVNSILRR 130 A VN +L R Sbjct: 120 ESASFVNGMLAR 131 >gi|297713054|ref|XP_002833030.1| PREDICTED: putative methyltransferase NSUN5-like [Pongo abelii] Length = 117 Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 14/115 (12%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A FQ++ L ++F ++ +V+S CSL ++++E+VV+ L+ +P L Sbjct: 15 SPARLHALAGFQQRALCHALTFPSLQ---QLVYSTCSLCREENEDVVRDALQQNPGAFRL 71 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 P A W ++ E +R +P+ GFF + R+ P+ Sbjct: 72 APALPA-WPHRGLSTFPGAEHCLRASPETTLSG--------GFFVAVIERVEVPR 117 >gi|190409023|gb|EDV12288.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi|256269492|gb|EEU04780.1| YNL022C-like protein [Saccharomyces cerevisiae JAY291] gi|290770995|emb|CAY82164.2| EC1118_1N18_0045p [Saccharomyces cerevisiae EC1118] gi|323335784|gb|EGA77064.1| YNL022C-like protein [Saccharomyces cerevisiae Vin13] Length = 490 Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 75/351 (21%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 W + + + + + + W+ + + I Sbjct: 154 RWIRINPLKCHPNGETEPVLAELRKKFTLKV------DKWSELVPGSIYYDEFIPNLFGI 207 Query: 210 ES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------- 259 I + + G +QD ++ P + + V+D C+APG KT Sbjct: 208 HPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPE 267 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFD---AVLVD 313 + ++ A + R + L+ + + D + + +VD Sbjct: 268 PPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVD 327 Query: 314 APCSSTGTIRRHPDVLWTRD-------------------------TDDIVKSACFQRKLL 348 CS +G R + R + K + FQ +++ Sbjct: 328 PSCSGSGIFGRKFFDSFNRRKIDDKDDDGDIVPDEQEEFIAKEELQTRLAKLSSFQFQMV 387 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI---------PVELVPLNSAYWK 399 +SF +V+S CS+ +++E VV +L + E++P K Sbjct: 388 KHAMSFPAAK-KIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKREVIPSWPRRGK 446 Query: 400 SIDMAMALSP----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + EG IR P S G GFFAV R Sbjct: 447 VEEFEEVFRDGVTYDPQQLAEGCIRALP--------KSDGGIGFFAVCFER 489 >gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305] gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305] Length = 137 Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 7/138 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59 M AR ++ +L V + L Q + T+ Sbjct: 1 MAKRSKARELAMQMLFLVDMN----PDIDGKTVLHMIQDRLEDEQQSRFAWTLFAGTMEH 56 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 ID + V + +L R + + LLR+ ++ Y D V+D +E AK+ Sbjct: 57 RETIDDRISKVAKNWTLKRMAVTDRNLLRLGCFELDYHDTPHTVVIDEIIELAKKF-GAE 115 Query: 119 HFAKLVNSILRRVSREKI 136 + + VN IL +++ + Sbjct: 116 NSSSFVNGILDKLAGQSH 133 >gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus flavithermus WK1] gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1] Length = 152 Score = 86.1 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + I + + + +V + Sbjct: 25 MK-RHTAREKALQALFQIDVGGIEPHEAVANVIEEETD--------PFMEMLVFGVVEHQ 75 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID +L L +L R + +LR++V ++ Y+ D+ +D A+E AK + Sbjct: 76 KEIDDLLRQHLEKWTLERVANVDRSILRMAVFEMKYMDDIPLSVSMDEAIELAK-VFGDE 134 Query: 119 HFAKLVNSILRR 130 ++ +N +L + Sbjct: 135 KSSRFINGVLAK 146 >gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10] gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5] gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10] gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5] Length = 152 Score = 86.1 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR---D----QILVRAIV 53 MK + AR + L + + + + ++A ++R D + V +V Sbjct: 1 MKRRV-AREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGDEVQMKEYVLQLV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 N T ID +L L + R +Q+LR++V ++ Y DV V+ A+E + Sbjct: 60 NGTWESKDSIDELLAHYLKGWQVSRLSRVDRQILRLAVYELTYRDDVPGKVAVNEAIELS 119 Query: 112 KRDKENRHFAKLVNSILRRVSR 133 K K VN +L R+ + Sbjct: 120 K-HFGTEESGKFVNGVLGRMIQ 140 >gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 86.1 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVSEYTMQLVEGYAEHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LR+ ++L++D D V+D V+ AK + Sbjct: 61 QRIDGLIAQYSVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFA 121 + Sbjct: 121 SPS 123 >gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans serovar Lai str. 56601] gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans serovar Lai str. 56601] Length = 138 Score = 86.1 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R ++ L + + L +L ++ D ++ +IVN ++ Sbjct: 1 MSARRTSREIAVMALYQLELTQPPLKEVLKFKWYDKKT---EPEERDFAVSIVNGVVKNQ 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +ID ++ + R + +LR+S+ +LY +V +D AVE K + Sbjct: 58 EQIDTLIKKYSKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEE 117 Query: 119 HF 120 Sbjct: 118 SA 119 >gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato str. DC3000] gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato str. DC3000] Length = 165 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVAINQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALTPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|213515080|ref|NP_001134598.1| NOL1/NOP2/Sun domain family, member 4 [Salmo salar] gi|209734568|gb|ACI68153.1| methyltransferase NSUN4 [Salmo salar] Length = 398 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 97/248 (39%), Gaps = 26/248 (10%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSG--AKVTAL 269 + +++ DA++ +P SVLD+CAAPGGKT L+ + + Sbjct: 158 PSRPDLYGMLGYYLMDAASVLPALALDVQEGHSVLDVCAAPGGKTLALLQTQAIRFLCVN 217 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCS---S 318 D+S R +L+ L+ E + + D VLVD PC+ Sbjct: 218 DISVSRTYRLQRVLNSYVPKELLTEERMRITSFDGRKWGEIERDTFDRVLVDVPCTTDRH 277 Query: 319 TGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 + + R + + Q +LLL GI V+PGG V++S CSL + +E VV+ Sbjct: 278 SAMEDENNIFKRARTK-ERQRLPQLQTELLLAGIEAVRPGGQVLYSTCSLSQLQNEYVVE 336 Query: 379 KVL----RSSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGF 433 + + I +++V L D A P + P + + Sbjct: 337 RAMHLAREEHGISLQVVDLRPITRLFKDTFHFAPDPHLGQLVLPHLTANFGPI------- 389 Query: 434 FAVALRRL 441 + L+RL Sbjct: 390 YMCKLQRL 397 >gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58] gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58] Length = 148 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56 KS ARL + L + + L LL + + ++ IV Sbjct: 6 KSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIEDVTYAQAEESFFDDIVTGV 65 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 + IDA++ L S+ R ++Q+LR ++L DV V+ V+ A Sbjct: 66 DKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYVDVAHA 125 Query: 114 DKENRHFAKLVNSILR 129 ++ A VN +L Sbjct: 126 FY-DKREAGFVNGLLD 140 >gi|254576939|ref|XP_002494456.1| ZYRO0A01892p [Zygosaccharomyces rouxii] gi|238937345|emb|CAR25523.1| ZYRO0A01892p [Zygosaccharomyces rouxii] Length = 465 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 33/265 (12%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---- 262 E I S + +G +QD ++ +P + V+D CAAPG KT L Sbjct: 203 HPSEKITSHDLYKQGKVIIQDRASCLPAHILNPGKEDVVMDACAAPGNKTTHLAAHIISA 262 Query: 263 -------GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC-PKKLFD--AVL 311 A++ A + R + L+ + + I D P + D A L Sbjct: 263 AGDSNGGQAQIHAFEKEPARAKVLQKMTSQAGCGSLVKIHVGDFTRLAVPDQFEDVTAAL 322 Query: 312 VDAPCSSTGTIRRH-----PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-VVFSN 365 VD CS +G R D + D + K + FQ +++ +S P +V+S Sbjct: 323 VDPSCSGSGIFGRKSLESSNDSQDQKLQDRLSKLSSFQFQVVKHAMSM--PNARKIVYST 380 Query: 366 CSLDKQDSEEVVQKVLRSSPIPV---------ELVPLNSAYWKSIDMAMALSPEGWI-RI 415 CS+ +++E VV +L S + E+VP + + + ++ Sbjct: 381 CSVHAEENERVVIDLLLDSKVKEWGWQLSPRSEVVPTWPRRGIAEEFEEVFRDDKPKCQL 440 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + + G GFFAV +R Sbjct: 441 LAESCIRALPREDGGIGFFAVCFQR 465 >gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis] Length = 422 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 8/136 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRF 59 M++ AR ++ L + +D +A + D +V Sbjct: 1 MRNRTIARELAIKALYQLDLLGDKAETEIDEFCRQNA----EKPDIYKFALLLVTGCRSH 56 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 + ID + + L R + +LR+ V ++LY D+ ++ A+E AK+ + Sbjct: 57 VKEIDERISLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIELAKKF-GD 115 Query: 118 RHFAKLVNSILRRVSR 133 + VN IL +V Sbjct: 116 KDSGMFVNGILDKVYN 131 >gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10] gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10] Length = 145 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +R + LL + ++ +++ D L++ D+ ++ IV+ P + Sbjct: 3 RRASRETAMKLLYQLEIQKTDRDEQINMALED---ESLTKNDREYIKGIVDGVYEKTPVL 59 Query: 64 DAVLDF-VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + R +LR+ + +ILY D+ V+ AVE AK+ N Sbjct: 60 DGIIEKKATGWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAKKY-SNEDAG 118 Query: 122 KLVNSILRR 130 VN +L + Sbjct: 119 AFVNGLLAK 127 >gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131] gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029] gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131] Length = 157 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ + +++ D RAIV+ Sbjct: 10 MKS--ASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDEMAEGDAKSFRAIVSG 67 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R ++ L R + +++L + V++ V+ AK Sbjct: 68 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESETPPKVVINEFVDIAKA 127 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 128 FFPEGREPKFVNAVLDHM 145 >gi|326437848|gb|EGD83418.1| hypothetical protein PTSG_04026 [Salpingoeca sp. ATCC 50818] Length = 301 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 29/234 (12%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVS---KRRL 276 +++ D ++ P VLD+CAAPGGK+ L +T+ D S + RL Sbjct: 83 YYLMDGASIFPALALDVEEGDCVLDMCAAPGGKSLILAEHLGDRGLLTSNDPSAARRARL 142 Query: 277 EKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRH----PDV 328 ++ H++A + ++ + FD +L+DAPCSS +H Sbjct: 143 GRVLREYIPAHIHAACVQVTGHDGAKWNRFEQNAFDKILLDAPCSSDRQHVQHVLEESKQ 202 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 L I ++A Q +L+ I V+ GG +V+S C+L +++ V+ +VL+ + Sbjct: 203 LKEWSGSRIKQNAKRQEDMLVAAIDIVRVGGRIVYSTCALSGYENDRVIHRVLKRRKDQI 262 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++V + + + + + I PD + F L R+ Sbjct: 263 KVV-------QPQEPVVGDKTKYGVHILPDSTQWGPI--------FYAVLERVA 301 >gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15] gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15] Length = 141 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 10/132 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ L + +S ++ + V +V Sbjct: 1 MMKRHMARELAVQSLFQMELSDLSAQEAIEFAVEGKEYDT-------FVTRLVEGVEANK 53 Query: 61 PRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 P ID L ++ S R + +LR++V ++L+ + ++ A+E K + Sbjct: 54 PEIDQKLRAALVNWSFERIGNIERTILRLAVYELLFEAKIPVRVTINEAIELTKAF-ADE 112 Query: 119 HFAKLVNSILRR 130 K+VN +L + Sbjct: 113 EATKIVNGVLGK 124 >gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 165 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L + D+ F + D R +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALNEIEAQFRVDNDFSNV---DGTYFRELLHGVAINQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALTSCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKIYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|45187658|ref|NP_983881.1| ADL215Wp [Ashbya gossypii ATCC 10895] gi|44982419|gb|AAS51705.1| ADL215Wp [Ashbya gossypii ATCC 10895] Length = 484 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 72/488 (14%), Positives = 148/488 (30%), Gaps = 72/488 (14%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF- 69 + ++ + L S + + D V AIV ++ +D +++ Sbjct: 10 VLEYIEQEFARKSKVAGSLHSLVLQSHKKYKLKSDVRHVYAIVASFWKYKAYLDRIIEKS 69 Query: 70 --VLISSLPRKKYSL-QQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + + + + + L + V +L + ++ A K Sbjct: 70 GLLKDVPRKKGEPAFKRSTLGLVVHDLLLSKKKRIHMGKHPLK-AFVLKHQTRLRGEYAK 128 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 L ++ + +L + P + +R + + D Sbjct: 129 QLVKLGVADLSVLVQDEREDATPVRWIRLNPFRIRGQREEVLQELQKKFPR----RVADW 184 Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 G+ + I S + G +QD ++ P Q+ + ++ Sbjct: 185 RELTPGSIYEDEYVAGLYGVHPADKITSHELYKRGKIIIQDRASCFPAQILAPGRSDVII 244 Query: 247 DLCAAPGGKTAQLIVS--------GAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMD 297 D CAAPG KT + A++ A + +R + LR + ++ D Sbjct: 245 DACAAPGNKTTHVAAHIFPEGGADHAQIHAFERDPQRAKTLRKMIATAGCDNAIEVHVGD 304 Query: 298 AFDYCPKKLFD---AVLVDAPCSSTGTIRRHPDVLWTRDT-------------------- 334 ++F +VD CS +G R Sbjct: 305 FTRDAQPEIFKNVTGFIVDPSCSGSGIFGRQLVDATQETQKGTETDPSADVPEEETFEAT 364 Query: 335 -------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 + + K + FQ +++ +SF +++S CS+ +++E VV +L S + Sbjct: 365 KSAVELKNRLAKLSSFQFQIVKHAMSF-PSAKKLIYSTCSVHAEENERVVIDLLLDSKVQ 423 Query: 388 V---------ELVPLNSAYWKSIDMAMALSPE------GWIRITPDMLEKIDGVSSGMDG 432 +++P + + G IR+ P G G Sbjct: 424 KGGWKVASRSKVIPAWPRRGHQAEFEEVFPDQAEELAGGCIRVLP--------KEDGGIG 475 Query: 433 FFAVALRR 440 FFAV R Sbjct: 476 FFAVCFER 483 >gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp. SK209-2-6] gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp. SK209-2-6] Length = 160 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + + + ++ +++ D L R +V Sbjct: 16 MKS--ASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDEMAEGDTKLFRKLVED 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + +D + D L + R +L+ L R + A++ + V++ V+ A+ Sbjct: 74 AVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSETPPKVVINEFVDIARA 133 Query: 114 DKENRHFAKLVNSILRRV 131 +K VN +L + Sbjct: 134 FFPEGKESKFVNGVLDHM 151 >gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis ATCC 49179] gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC 49179] Length = 134 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 5/138 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL +L + + Q ++ TL L Sbjct: 1 MATRSQVREAVVSLLYAYESGN---EAMLKSAPDFFTQKKIKNAQQRFALDLLEGTLEHL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 P +D L +L L R + +LR+ +IL+ V++ A+E +K + + Sbjct: 58 PSLDNALTPLLKDWDLARIGSMERAILRLGAYEILHTPTNPVVVINEAIELSK-NYGEDN 116 Query: 120 FAKLVNSILRRVSREKIE 137 KL+N+IL + ++K Sbjct: 117 APKLINAILDALCKQKSH 134 >gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782] gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782] Length = 145 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +R + LL + ++ +++ D L++ D+ ++ IV+ P + Sbjct: 3 RRASRESAMKLLYQLEIQKTDRDEQINMALED---ESLTENDREYIKGIVDGVFDKTPVL 59 Query: 64 DAVLDF-VLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D +++ + R +LR+ + +ILY D+ V+ AVE AK+ N Sbjct: 60 DGIIEKKATGWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAKKY-SNEDAG 118 Query: 122 KLVNSILRR 130 VN +L + Sbjct: 119 AFVNGLLAK 127 >gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293] gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293] Length = 140 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 3/123 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLD-LEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S AR+++ + + L LL + L + R +V T+ Sbjct: 1 MGSRRKARILAFQAIYSWEFHKPLLAELLQFDWLEEERKAKLDTETWLFARLLVQGTIEN 60 Query: 60 LPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID + + + R +LR+S ++L+ DV +D AV+ AK + Sbjct: 61 CDTIDHRIQNRLEHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVDLAKDFGGD 120 Query: 118 RHF 120 + Sbjct: 121 DSY 123 >gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4] gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4] Length = 158 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ +R ++ + + + +L + F + DQ +R +++ L Sbjct: 18 RNRRKSRELALKGIYRNLMNQADFRAILRELADEPEF---DKADQEYLRKLLDGVLAERE 74 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +L +S ++++ L + ++ VE AK Sbjct: 75 ELDRRIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDG- 133 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 134 HKYVNGVLDK 143 >gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii Ech703] gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703] Length = 139 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R ++ R+DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGADITYFRELLTGVATQAERLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR++V ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L + Sbjct: 127 LDKAGPH 133 >gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus succinogenes 130Z] gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z] Length = 142 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L ++E + + D R + T+ +L Sbjct: 9 SPRRRARECAVQALYSWAVSN---NDATEIELSFITEQDMKGVDTPYFRKLFRNTVTYLE 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +D + L + + +LR++ ++ Y DV ++ A+E AK Sbjct: 66 SVDVTIAPFLDRTSEELTPIEKAVLRLATYELKYEPDVPYKVAINEAIELAKTF-GAEDS 124 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 125 HKYINGVLDK 134 >gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM B1551] gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM 319] gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM B1551] gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM 319] Length = 130 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + + + + ++V + Sbjct: 1 MK-RHTARQKALQALFQHDLGQTEPMEAIGNVVQNEKSDQ-------FLESLVLGVVEHQ 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +L L +L R + +LR++V ++ Y ++ ++ A+E AK + Sbjct: 53 QEIDELLRNHLEKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELAKTF-GDD 111 Query: 119 HFAKLVNSILRR 130 +K +N +L + Sbjct: 112 QSSKFINGVLSK 123 >gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 165 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L +L+ + D+ F + D +++ Sbjct: 25 AKRREARQMATQALYQRHMAGHALSEIEAQFRVDNDFSNV---DGTYFHELLHGVATNQT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L L ++ +LR+S ++L +DV V++ +E AK Sbjct: 82 EIDTALTPCLDLTIEELDPIELAILRLSTFELLKRIDVPYRVVINEGIELAKVYGSTDG- 140 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 141 HKFVNGVLDK 150 >gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035] gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035] Length = 160 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 10/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVN 54 MKS ARL + L + S + + + + D L R +++ Sbjct: 15 MKS--AARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGAEVDEGVDMAEGDVDLFRKLLD 72 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + + +ID + D L + R +L+ L R + A+++ D V+ V+ AK Sbjct: 73 DAVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDTPPKVVIMEYVDVAK 132 Query: 113 RDKENRHFAKLVNSILRRV 131 + +K VN++L + Sbjct: 133 AFYPDGKESKFVNAVLDHM 151 >gi|329767039|ref|ZP_08258567.1| transcription antitermination factor NusB [Gemella haemolysans M341] gi|328837764|gb|EGF87389.1| transcription antitermination factor NusB [Gemella haemolysans M341] Length = 131 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R +L V + LLDLE + + + V + + Sbjct: 1 MKSRHELREAVFKILFQVENTELDFIELLDLEQEEISTSI-------YVNKTLTEIIEKK 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID V+ L L R +Q+LR+S +ILY D+ ++ AVE +K+ E Sbjct: 54 DEIDEVISNNLKDWKLERLSKMDRQILRISAYEILYSDIPYKVSINEAVELSKKYSEKDE 113 Query: 120 FAKLVNSILR 129 K +N +L+ Sbjct: 114 SYKFINGVLK 123 >gi|224004322|ref|XP_002295812.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|209585844|gb|ACI64529.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 380 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 16/151 (10%) Query: 305 KLFDAVLVDAPCSSTGTIRRHPDVLW--TRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FD VLVDA CS+ G +R + T + ++ + Q++LL G K GGIVV Sbjct: 230 QPFDRVLVDAECSTDGAVRHNQKRQQGPTWNATNMNELVDLQKRLLDSGFRLCKSGGIVV 289 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------------E 410 +S CSL + +E+VVQ +L ++P++ + +++ + Sbjct: 290 YSTCSLSAKQNEQVVQWLLEKHKNAF-IIPVSFSKGRNLSSKTSQRATDSLSFIQEGSIA 348 Query: 411 GWIRITPD-MLEKIDGVSSGMDGFFAVALRR 440 G +R P + GFF + + Sbjct: 349 GTVRFNPSFEVASCGECLFSGGGFFLAKIGK 379 >gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b] gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b] Length = 152 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 9/145 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLR 58 +RL L + L + R + + R IV L Sbjct: 6 RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEGDQYKPAELQFFRDIVKGVLD 65 Query: 59 FLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 ID LD L L R + ++ +LR ++ + DV V+ V+ A Sbjct: 66 NQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAGAFF 125 Query: 116 ENRHFAKLVNSILRRVSREKIELLQ 140 + ++N++L R++R+ Sbjct: 126 GPTE-SGMINAVLDRLARQARPEHF 149 >gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus ATCC 29083] gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus ATCC 29083] Length = 144 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V Sbjct: 1 MAARNTARKRAFQILFEGDQRDADVLTVLADWIRHSREDTRQPPVSEYTMQLVEGYAEHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LR+ ++++ D D V+D V+ AK + Sbjct: 61 QRIDELIAQYSVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFA 121 + Sbjct: 121 SPS 123 >gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1] gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1] Length = 144 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G F + D + A+++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLNALLHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ ++D+ V++ AVE AK Sbjct: 58 SEALSADIVPCLDRPIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELAKTFGGAD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella excrementihominis YIT 11859] gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella excrementihominis YIT 11859] Length = 159 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 4/130 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + F + DQ R +++ P ++A Sbjct: 26 EFALQGVYQWLMSHTDPEAIDAAALEAEDF---DKADQAFYRELLHGVTEEFPSLEASYA 82 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + + +L + ++ V++ AVE AK + F VN +L Sbjct: 83 PHIDREVTSLSPIERAILLIGTYELKNTTTPYRVVINEAVELAKSFGGSDGFK-YVNGVL 141 Query: 129 RRVSREKIEL 138 ++ E Sbjct: 142 DKMVPELRPY 151 >gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix] gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix] Length = 187 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L +L D + D R I+ R +DA Sbjct: 53 ARRRAMQALYSWQMTAAEPKDILAEFRDDEEHA---KADAEYFREILIGVTRNREALDAR 109 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 ++ L L + + LL + ++ +DV V++ AV+ AKR + +N Sbjct: 110 MEPYLGRPLDQLDPVERALLWLGQWELAERIDVPYRVVINEAVDLAKRF-GAEQSHRYIN 168 Query: 126 SILRR 130 +L R Sbjct: 169 GVLDR 173 >gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] Length = 164 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + D +A+V+ + Sbjct: 19 AARLAAVQALYQMDIGGAGVLEVVAEYEAHRLGHEIDGEQYRPADAAWFKAVVSGVVENQ 78 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D V+ L L R +L+ +LR ++ DV +V V+ A+ Sbjct: 79 RALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKKDVPVAVIVTEYVDVARAFF-E 137 Query: 118 RHFAKLVNSILRRVSREK 135 K+VN++L R++R+ Sbjct: 138 EDEPKIVNAVLDRLARKY 155 >gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp. X514] gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561] gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513] gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514] gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1] gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561] gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513] gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 140 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR +L R+ ++ +L+ Y + + + V + L Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKILENFYKEKD----PGEQKEYIENTVIGAIEHLEE 57 Query: 63 IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ID ++ + L R +LR S+ ++ Y ++ ++ AVE AK+ A Sbjct: 58 IDKEIERYSQNWALNRMPKIDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYSTEDSPA 117 >gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16] gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16] Length = 172 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ L + R + ++ + ++ D+ A++N +R Sbjct: 33 SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEA 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 R+ A + L + + L V ++++ LD+ V++ AVE K + Sbjct: 90 RLTAAFEPFLDRKVEELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGY 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|158296526|ref|XP_554918.3| AGAP008523-PA [Anopheles gambiae str. PEST] gi|157014752|gb|EAL39544.3| AGAP008523-PA [Anopheles gambiae str. PEST] Length = 511 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 26/233 (11%) Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL----- 279 D ++ +P VLD CAAPGGK + + D+ + R ++ Sbjct: 284 DGASCLPPLALNVQPGDRVLDACAAPGGKSLLLLQTLHPGTMVMNDLQESRCNRIRQLMR 343 Query: 280 ---RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDT 334 ++ I + DA + ++D VLVD PC++ + ++ Sbjct: 344 QYLYDFDEKWKQKRCFITQSDARNLQEHSMYDRVLVDVPCTNDRHSVMENDNNIFKPSRV 403 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPIPVEL 390 + ++ Q +L + ++PGG +V+S CSL ++ VV L + V + Sbjct: 404 KERLRLPELQASILGNCLKLLRPGGTLVYSTCSLSPVQNDGVVHMALSNVFSEIGMTVTI 463 Query: 391 VPLNSAYWKSID---MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ D A + + + P + + + R Sbjct: 464 KDLSLMMQPLTDIFKFANPTTLKYGQLVLPFLPANFGP-------MYICKMVR 509 >gi|328881138|emb|CCA54377.1| Transcription termination protein NusB [Streptomyces venezuelae ATCC 10712] Length = 145 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S+ +L + + +V + Sbjct: 1 MAARSKARKRAFQILFEADQRGASVQQVLADQVRLARSDDRQPPVSDFTMQLVEGYAAHV 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + L R + + ++R+ ++++ D D +D AV+ AK + Sbjct: 61 ARIDELIATYAVDWDLDRMPVADRNIVRLGAYEVIWEDGTPDAVAIDEAVQLAKEFSTDE 120 Query: 119 H 119 Sbjct: 121 S 121 >gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187] gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187] Length = 138 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 7/138 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR ++ + + ++ +++ + + + D ++ + Sbjct: 1 MKPAERRKARHLALQAIYQWQLAKDNVADIVEQFKLEQPTKGV---DLPYFELLLTGVVN 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + +DA L L + +LR++ ++ Y DV V++ A+E AK Sbjct: 58 NVTNLDATFSPFLSRKLDDLDQIDKGVLRLACYELTYCKDVPYKVVINEAIELAKAF-AT 116 Query: 118 RHFAKLVNSILRRVSREK 135 K VN +L +V ++ Sbjct: 117 DDSHKFVNGVLDKVVKQM 134 >gi|224005519|ref|XP_002291720.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220972239|gb|EED90571.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 723 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 48/211 (22%) Query: 252 PGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-----EDIIEMDAFDYCPKKL 306 K ++ V A +++ +R ++ L + + + + + PK Sbjct: 361 MASKADEVPCKDYTVVANELTHQRATRMHSRLLQSNSKSLSHLIVTSGDGQEYRSMPKNY 420 Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP--------- 357 FD V+ D PCS GTI+R+ Q++LL G+ +KP Sbjct: 421 FDFVMCDVPCSGDGTIQRNKP---------------LQKELLRVGLMGLKPSEVDSSGKC 465 Query: 358 -GGIVVFSNCSLDKQDSEEVVQKVLRS------SPIPVELVPLNSAYWKSIDMAMALSPE 410 GGI V+S CSL+ ++EEVV +VL + ELV L + + + S Sbjct: 466 IGGIAVYSTCSLNPTENEEVVYEVLDELNSDRGNDYEFELVDLRDSSSNTTESNRNGS-- 523 Query: 411 GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++R+ P S G GFFA ALR++ Sbjct: 524 -FLRVLP-------ASSHG--GFFAAALRKV 544 >gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1] gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1] Length = 155 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ + +++ D RAIV+ Sbjct: 8 MKS--ASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDEMAEGDAKSFRAIVSG 65 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R ++ L R + +++L + V++ V+ AK Sbjct: 66 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESETPPKVVINEFVDIAKA 125 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 126 FFPEGREPKFVNAVLDHM 143 >gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075] gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075] Length = 166 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + + + D RAI+ Sbjct: 16 NKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAILTGV 75 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 + ID ++ L L R +L+ +LR V +++ DV +V V+ AK Sbjct: 76 VEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDIAKA 135 Query: 114 DKENRHFAKLVNSILRR 130 KLVN++L R Sbjct: 136 FY-EEDEPKLVNAVLDR 151 >gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688] gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688] Length = 158 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ +R ++ + + + +L + F + DQ +R +++ L Sbjct: 18 RNRRKSRELALKGIYRNLLNQADFRAILRELADEPEF---DKADQEYLRKLLDGVLAERE 74 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +L +S ++++ L + ++ VE AK Sbjct: 75 ELDRRIAVFVDRPMQELSPIEHGILCLSAYELIFDLSIPYRVAINEGVELAKIYGGTDG- 133 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 134 HKYVNGVLDK 143 >gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas manganoxydans SI85-9A1] gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas manganoxydans SI85-9A1] Length = 177 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + +L + + + D R +V+ Sbjct: 15 NKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLGSEIDGETYREADAGWFRDVVSGV 74 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 +R ID + L L R +L+ +LR ++ DV +V ++ AK Sbjct: 75 VRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRKDVPVAVIVSEYIDVAKA 134 Query: 114 DKENRHFAKLVNSILRR 130 LVN++L R Sbjct: 135 FYTGDE-PGLVNAVLDR 150 >gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida W619] gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619] Length = 166 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L + SL + D+ F + D R I++ Sbjct: 26 AKRREARKLATQALYQWHMAQHSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPAIKS 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRHF 120 ID+ L + +L +LR+S + I +DV V++ VE AK Sbjct: 83 EIDSALKPCMDIALEELDPVELAVLRLSTWEFIKRVDVPYRVVINEGVELAKVFGATDGH 142 Query: 121 A 121 Sbjct: 143 K 143 >gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces griseoaurantiacus M045] gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces griseoaurantiacus M045] Length = 142 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + +L S +V + Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVSEYTMQLVEGYAEHV 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID +L + +L R + +LR+ +++++D D V+D V+ AK + Sbjct: 61 TRIDELLAQYAVGWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFAKLVNSILRR 130 VN +L R Sbjct: 121 S-PGFVNGLLGR 131 >gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis 0140J] gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein) [Streptococcus uberis 0140J] Length = 142 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFL 60 S + R + L + L+ D + D + +VN + Sbjct: 7 NSRRDLRERAFQALFNMEHGGDFLSA--SQFAYDYDKVSDQEHDIPAFLLTLVNGVVNHK 64 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +DA++ L S+ R + + +LR+ + +I + + D ++ +E AK+ + Sbjct: 65 DELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIEIAKKY-SD 123 Query: 118 RHFAKLVNSILRRV 131 AK +N +L + Sbjct: 124 ETSAKFINGLLSQF 137 >gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter aphrophilus NJ8700] gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter aphrophilus NJ8700] Length = 141 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S + E + ++ D+ R + T+ + Sbjct: 9 SPRRRARECAVQALYSWAISQNSPELV---ELNFMTEQDMNGVDKPYFRKLFRQTVENVD 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ++ + L +L + +LR++V ++ + DV V++ A+E AK + Sbjct: 66 AVEHTMQGYLDRTLDELDPIEKAILRLAVYELQFEADVPYKVVINEAIEVAKVFGADES- 124 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 125 HKYINGVLDK 134 >gi|118384082|ref|XP_001025194.1| hypothetical protein TTHERM_00685920 [Tetrahymena thermophila] gi|89306961|gb|EAS04949.1| hypothetical protein TTHERM_00685920 [Tetrahymena thermophila SB210] Length = 479 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 16/135 (11%) Query: 317 SSTGTIRRHPDVLWTR--------DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 S+ T ++ W+ D + Q+KLL G K GG +V+S CS Sbjct: 349 SNIYTQKKVKKNEWSMEDFQERVLDPIKLQNIVDLQKKLLTNGFKLCKEGGYIVYSTCSF 408 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSS 428 + +E+VV+ L VE + + ++ + +R P + + Sbjct: 409 ARNQNEDVVEWFLNEFKDQVESIHPFNNDVSNMPACKPGFIQNTVRFDPFVSKSG----- 463 Query: 429 GMDGFFAVALRRLIQ 443 G F + + Sbjct: 464 ---GMFVSKFIKKQK 475 Score = 49.9 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 78/205 (38%), Gaps = 8/205 (3%) Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 + + E+ + + + ++P F + L++ + + + +K IE Sbjct: 15 NEQKNEEQDKEQKNKNILDLLPSTFTQFLKDNNINLEYFQEIENFPRYIRLKPDIKVSIE 74 Query: 188 TWAHKLN----AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNL 243 L + IV+ +++G+ + D S++ ++ Sbjct: 75 ELKKDLGTDDVQKIDYLCNFYSIPENVKIVNSKYYSQGLLYGIDLSSAAVIKSLDPQKGE 134 Query: 244 SVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAF 299 VLDLC PG K + K +D+++ RL R + + L + + D Sbjct: 135 KVLDLCCCPGMKLCNIADIIGAEGKAFGVDINETRLNTCRSIVKKYKLDHIIKLELADGT 194 Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRR 324 Y + FD VLVDA C+ G+++ Sbjct: 195 TYNKESQFDRVLVDAECTHDGSLKH 219 >gi|195032188|ref|XP_001988454.1| GH11175 [Drosophila grimshawi] gi|193904454|gb|EDW03321.1| GH11175 [Drosophila grimshawi] Length = 510 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 19/266 (7%) Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS-LPGFAEG 221 + V +D + + + + + T + + L G Sbjct: 220 DWVAESEHYKYYQTNVDFPLIIEPDATLQYPEHLAIYTYEMGNCADFKPPRQCLTGVLSH 279 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL 279 ++ D ++ +P VLD CAAPGGK + ++ DV + RL KL Sbjct: 280 --FLMDGASVLPPLFLQVQPGERVLDACAAPGGKSLLMLQTLHLDQLVCNDVQESRLNKL 337 Query: 280 RC--------NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVL 329 R R DA + +D +LVD PC++ + + ++ Sbjct: 338 RHVMQEYLFDYKQRWAGKRLIFSHNDARNLDEYGSYDKILVDVPCTTDRHVLMHQDNNIF 397 Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SP 385 + ++ Q +L + +KPGG +V+S CSL ++ VV L+ Sbjct: 398 KPTRIKERLRIPELQAGILANCLRLLKPGGSLVYSTCSLSPVQNDGVVHMALQKVFTDHG 457 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEG 411 I + L+ D+ P+G Sbjct: 458 ITTRIKDLSQHTALLGDIYRFEQPKG 483 >gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C str. Eklund] gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C str. Eklund] Length = 133 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R V+ LL + + + +L + ++ + D + + IVN + Sbjct: 2 NRRKSREVAMKLLFEMSINKEEFSEILKN-FKENTDTNMENVDFVYINKIVNGIEQNKED 60 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID ++ L L R +LR+S +I+++ D+ + V+ A+E AK+ + + Sbjct: 61 IDKRIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSAD-NS 119 Query: 121 AKLVNSILRRV 131 VN +L + Sbjct: 120 PAFVNGVLGNM 130 >gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida KT2440] gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1] gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida GB-1] gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440] gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1] gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1] gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1] Length = 166 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L + SL + D+ F + D R I++ Sbjct: 26 AKRREARKLATQALYQWHMAQHSLNEIEAQFRVDNDF---TDVDGAYFREILHGVPAIKG 82 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ID L + +L +LR+S +++ +DV V++ VE AK Sbjct: 83 EIDKALVPCMTIALEELDPVELAVLRLSTWELIKRVDVPYRVVINEGVELAKVFGATDGH 142 Query: 121 A 121 Sbjct: 143 K 143 >gi|225708214|gb|ACO09953.1| methyltransferase NCL1 [Osmerus mordax] Length = 342 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 100/264 (37%), Gaps = 29/264 (10%) Query: 200 TGGIRLKELPESIVSLP-----GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGG 254 L I + +++ DA++ +P + SVLDLCAAPGG Sbjct: 85 PNIRCLVYPKGDISRFKPARPRAYGLLGYYLLDAASVLPALVLDVQEGHSVLDLCAAPGG 144 Query: 255 KTAQLIVSGAKVTAL--DVSKRRLEKLRCNLDRLHLY--------AEDIIEMDAFDYCPK 304 K L+ +G DVS R +LR L + ++ + Sbjct: 145 KALALLQTGLLRFLCVNDVSSSRTARLRAVLRSFVHKELLTDDRVRITSFDGRKWEEFER 204 Query: 305 KLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 FD VLVD PC++ I ++ T + + Q +LLL GI +PGG VV Sbjct: 205 NFFDRVLVDVPCTTDRHSLIEEENNIFKRARTKERQRLPQVQLELLLSGIQAARPGGEVV 264 Query: 363 FSNCSLDKQDSEEVVQKVL----RSSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITP 417 +S CSL + ++ VV++ L + +E+V L D A + P Sbjct: 265 YSTCSLSQLQNQYVVEQALQQAREEHGVALEVVDLRPLTHLFRDTFHFAPDTHLGELVLP 324 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + + + LRRL Sbjct: 325 HLSANFGPI-------YLCKLRRL 341 >gi|312385026|gb|EFR29619.1| hypothetical protein AND_01267 [Anopheles darlingi] Length = 563 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 12/169 (7%) Query: 227 DASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKL----- 279 D ++ +P VLD C+APGGK+ L+ + + D+ + R ++ Sbjct: 383 DGASCLPPLALDVQPGERVLDACSAPGGKSLLLLQTLLPGTMVMNDLQESRCNRIRRLLR 442 Query: 280 ---RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDT 334 D+ I + DA + +++D VLVD PC++ + ++ Sbjct: 443 QYLYDFDDKWKQKRCFITQSDARNLREYRMYDRVLVDVPCTNDRHSVMENDNNIFKPSRV 502 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ Q +L + ++PGG +V+S CSL ++ VV L + Sbjct: 503 KERLRLPELQAAILANCLQLLRPGGTLVYSTCSLSPVQNDGVVHMALSN 551 >gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB] gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB] Length = 151 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 5/126 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTL 57 M +R ++ +L + + L + D + + IV Sbjct: 1 MGRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLFDDDEKHRVPAEVRPFAEEIVRGVS 60 Query: 58 RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115 RID ++ L R + +LR++V ++L+ D+ ++ A++ K Sbjct: 61 LHRARIDEMITSASEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAIDLGKTFG 120 Query: 116 ENRHFA 121 A Sbjct: 121 SPDSGA 126 >gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ] gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ] Length = 142 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 6/137 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ +L + SL L +R + A+V + Sbjct: 1 MGLRREARELALQMLYAQDTLQGSLRDTLRGFREGVET---GERTREFAEALVQGVMEHR 57 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID + + L R ++R++ ++++ D+ ++ A+E AK+ ++ Sbjct: 58 EAIDQAIVARSKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAKKY-GDK 116 Query: 119 HFAKLVNSILRRVSREK 135 VN IL + Sbjct: 117 ESPAFVNGILDELEACP 133 >gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4] gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4] Length = 160 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFL 60 ARL + L + + ++ + + + D R+IV +R Sbjct: 18 AARLAAVQALYQMDIGGTGVLEVVAEYETHRLGQEIDGETYLKADASWFRSIVAGVVRDQ 77 Query: 61 PRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +ID ++ L SL R +++ +LR ++L DV +V VE A + Sbjct: 78 TKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKDVPIAVIVTEYVEIAHAFFQE 137 Query: 118 RHFAKLVNSILRR 130 KLVN++L R Sbjct: 138 DE-PKLVNAVLDR 149 >gi|195118050|ref|XP_002003553.1| GI17979 [Drosophila mojavensis] gi|193914128|gb|EDW12995.1| GI17979 [Drosophila mojavensis] Length = 512 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 86/236 (36%), Gaps = 26/236 (11%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++ +P VLD CAAPGGK + ++ DV + RL KL Sbjct: 282 FLMDGASVLPPLFLQVQPGERVLDACAAPGGKSLLMLQTLHLDQLVCNDVQESRLNKLRR 341 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 R + DA + +D +LVD PC++ + + ++ Sbjct: 342 VMQEYLFDYKQRWAGKRLIFSQSDARNLDEYGSYDKILVDVPCTTDRHVLMHQDNNIFKP 401 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + +KPGG +V+S CSL ++ VV L+ I Sbjct: 402 TRIKERLRIPELQAGILANCLRLLKPGGSLVYSTCSLSPVQNDGVVHMALQKVFTEHGIT 461 Query: 388 VELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ D+ P+G + P + + + R Sbjct: 462 ARIKDLSQHTALFSDIYRFEQPKGLKYGQMVLPYLPANFGP-------MYFSKITR 510 >gi|332373062|gb|AEE61672.1| unknown [Dendroctonus ponderosae] Length = 483 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 28/239 (11%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA--QLIVSGAKVTALDVSKRRLEKLR 280 +++ D + +PV S+LD+CAAPGGKT + + A DV+ RL ++ Sbjct: 252 YYLMDGGSILPVLALDLKPGCSMLDMCAAPGGKTYLAIQTLYPNCIVANDVTNSRLNRIE 311 Query: 281 CNLD--------RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLW 330 L R + + FD VLVD PC++ ++ Sbjct: 312 SVLHQFLYDVEERWLKPGRIKLCNNDGRCISVDNFDRVLVDVPCTTDRHSLKENSNNIFT 371 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPI 386 + + ++ Q +LL ++ VK GGIVV+S CSL ++ VV L+ S I Sbjct: 372 SSRVKERLQLPELQSELLYSALTLVKKGGIVVYSTCSLSPIQNDGVVGMALKKIWENSKI 431 Query: 387 PVELVPLNSAYWKSID----MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + L+ A ++ L G + + P + + L+R+ Sbjct: 432 EIIVKDLSPALLQTRSVFYLADQRLLKYGHL-VLPQKGQNYGPT-------YFCKLQRI 482 >gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040] gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040] Length = 160 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 7/137 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVT 56 ++ ARL + L + + S ++ ++ D L R +VN Sbjct: 15 QARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRQLVNDA 74 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + +ID + D L + R +L+ L R + A+ + D V++ V+ A+ Sbjct: 75 VNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAF 134 Query: 115 KENRHFAKLVNSILRRV 131 A VN++L + Sbjct: 135 FPEGREASFVNAVLDHM 151 >gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM 12614] gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM 12614] Length = 173 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 9/135 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + LT ++ + + + D+ + I+ + Sbjct: 24 ARLAAVQALYQMDVGGAPLTSVVSEFTAFRLGKEIDGEQYREADEQWFKQILAGVVEDQK 83 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +D + L L R L+ +LR ++L DV ++ ++ AK E+ Sbjct: 84 FLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDVPAKVIISEYIDVAKAFFEDD 143 Query: 119 HFAKLVNSILRRVSR 133 LVN +L R++ Sbjct: 144 E-PGLVNGVLDRLAH 157 >gi|195388533|ref|XP_002052934.1| GJ19531 [Drosophila virilis] gi|194149391|gb|EDW65089.1| GJ19531 [Drosophila virilis] Length = 510 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 86/236 (36%), Gaps = 26/236 (11%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++ +P VLD CAAPGGK + ++ DV + RL KL Sbjct: 280 FLMDGASVLPPLFLQVQPGERVLDACAAPGGKSLLMLQTLHLDQLVCNDVQESRLNKLRR 339 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 R + DA + +D +LVD PC++ + + ++ Sbjct: 340 VMQEYLFDYKQRWAGKRLIFSQSDARNLDEYGSYDKILVDVPCTTDRHVLMHQDNNIFKP 399 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + +KPGG +V+S CSL ++ VV L+ I Sbjct: 400 TRIKERLRIPELQAGILANCLRLLKPGGSLVYSTCSLSPVQNDGVVHMALQKVFTEHGIT 459 Query: 388 VELVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + L+ D+ P+G + P + + + R Sbjct: 460 ARIRDLSQHTALFSDIYRFEQPKGLKYGQMVLPYLPANFGP-------MYFSKITR 508 >gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica SH 1] gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula baltica SH 1] gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica WH47] Length = 145 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 10/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL---LSQRDQILVRAIVNVTL 57 M + AR + LL ++ S + L+ +++ T+ Sbjct: 5 MSTRRRAREIVLQLLYEADLNDWR-DAATSRKFIRSRLQGRKVLTD----FAAELLDGTM 59 Query: 58 RFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 IDA L + + L R + + +LR+ +ILY + A+ AKR Sbjct: 60 ARRDDIDAKLTKLSTNWALHRMPVTDRNVLRLGAYEILYSGTPGQVAISEALTLAKRY-G 118 Query: 117 NRHFAKLVNSILRRVSREK 135 + + +N +L R+ + Sbjct: 119 GENSPRFINGVLDRLFKYH 137 >gi|126735762|ref|ZP_01751507.1| NOL1/NOP2/sun family protein, putative [Roseobacter sp. CCS2] gi|126714949|gb|EBA11815.1| NOL1/NOP2/sun family protein, putative [Roseobacter sp. CCS2] Length = 117 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 29/138 (21%) Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + FDAV DAPCS +GT RR PD W D + + Q +L V GG+++ Sbjct: 8 QQPKFDAVFCDAPCSGSGTWRRTPDAKWRLTEDRLDQLIRSQATVLDAAAPLVAAGGVLI 67 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 ++ CS+ ++++ V + SP IR + Sbjct: 68 YATCSVLTHENQDAVDRFCTRSPEW------------------------GIR----RNTQ 99 Query: 423 IDGVSSGMDGFFAVALRR 440 + G DGFF L + Sbjct: 100 RLPDADG-DGFFTCVLLK 116 >gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 138 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 5/122 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R ++ L + L +L ++ D ++ +IVN ++ Sbjct: 1 MSARRTSREIAVMALYQLELTGPPLKEVLKFKWYDKKT---EPEERDFAVSIVNGVVKNQ 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +ID ++ + R + +LR+SV +LY +V +D AVE K + Sbjct: 58 EQIDTLIKKYSKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVELTKEFESEE 117 Query: 119 HF 120 Sbjct: 118 SA 119 >gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT] gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT] Length = 133 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R V+ LL + + + +L + ++ + D I + IVN + Sbjct: 2 NRRKSREVAMKLLFEMSINKEEFSEILKN-FKENTDTNMENVDFIYINKIVNGIEQNKED 60 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID ++ L L R +LR+S +I+++ D+ + V+ A+E AK+ + + Sbjct: 61 IDKKIEENLTKWKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELAKKYSAD-NS 119 Query: 121 AKLVNSILRRV 131 VN +L + Sbjct: 120 PAFVNGVLGNM 130 >gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter upsaliensis JV21] gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter upsaliensis JV21] Length = 132 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S AR LL + + + + R + + ++ N L L Sbjct: 1 MASRHQARQSVISLLYALELNGKN-DNFITEFLQEKKIRNEA---KNFTLSLYNGVLEHL 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D +D L + + + + + +LR+ ++L+ D V++ AVE AK N + Sbjct: 57 QSLDERIDVFLNENKIHQIGHIERAILRLGAFELLHTDTLAAIVINEAVELAKEM-ANEN 115 Query: 120 FAKLVNSILR 129 KL+N +L Sbjct: 116 APKLINGVLD 125 >gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis SK121] Length = 165 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56 + AR + L + LD S LS +D +V+ Sbjct: 10 ARHKARKRAVDFLFEAEARD------LDPVALASERSDLSVKDDAVAPVAAYTVTLVSGV 63 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 L RID V+ L +L R + +LR++V ++ + DV VD AVE AK+ Sbjct: 64 AENLDRIDQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122 Query: 115 KENRHFAKLVNSILRR 130 VN IL + Sbjct: 123 LSTDDSPGFVNGILGQ 138 >gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus erythropolis PR4] Length = 165 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 15/136 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56 + AR + L + LD S LS +D +V+ Sbjct: 10 ARHKARKRAVDFLFEAEARD------LDPVALASERSDLSVKDDAVAPVAAYTVTLVSGV 63 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 L RID V+ L +L R + +LR++V ++ + DV VD AVE AK+ Sbjct: 64 AENLDRIDQVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122 Query: 115 KENRHFAKLVNSILRR 130 VN IL + Sbjct: 123 LSTDDSPGFVNGILGQ 138 >gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS] gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS] Length = 164 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 11/154 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCL---------LDLEYGDSAFRLLSQRDQILVRAI 52 K+ AR L + + L E +S + + D + + Sbjct: 11 KARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDMQKADIPYFKQL 70 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 ++ +D + L + + +LR+ ++ + D+ V++ AVE A Sbjct: 71 LHSIPEKTSDLDKLFAPFLDRKITQLDPVELAILRIGSYELTHCQDIPFKVVINEAVELA 130 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGI 145 K+ K +N +L +++ + + + Sbjct: 131 KQF-GAEQSHKYINGVLDKLAHSQQKSTKFTKHK 163 >gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338] Length = 148 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + LL G +++ +V Sbjct: 1 MGARNKARKRAVDVLYEADLRGEDAVTLLSGRVGSPDLPPVNE----YTVTLVEGVTANR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 RID +L +L R + +LR+ + ++L+ DV +D AVE K Sbjct: 57 QRIDELLVEHAEGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAVELVKA-LST 115 Query: 118 RHFAKLVNSILRR 130 + VN +L R Sbjct: 116 DDSPRFVNGVLGR 128 >gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli RM2228] gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20] gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli RM2228] gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20] Length = 132 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 6/131 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL + + +D + R + ++ ++ L Sbjct: 1 MATRHQVRQSVISLLYALEMNEKN-ENFIDEFLNEKKIRN---EQKNFTLSLYEGIIKNL 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID L+ L + + + + + +LR+ ++L+ D + V++ A+E AK N + Sbjct: 57 DDIDKNLNPYLNENEIEKLGHIERAILRLGAYELLFTDTPNAIVINEAIELAKE-LANDN 115 Query: 120 FAKLVNSILRR 130 K +N +L Sbjct: 116 SPKFINGVLDT 126 >gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 139 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 7/141 (4%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + AR + L ++ + + + + D R + + T Sbjct: 1 MKITARRRARECAVQALYSWQLSNNNIADIEAQFLAEQDIKGI---DVAYFRELYSGTAI 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L L + + + +LR+++ ++ D+ ++ A+E AK Sbjct: 58 AADMLDQLMVPYLSRPLDKLGHVERAVLRLALYELSKRQDIPYRVAINEAIELAKTF-GA 116 Query: 118 RHFAKLVNSILRRVSREKIEL 138 K +N +L + + + Sbjct: 117 EDSYKFINGVLEKTASQIRPH 137 >gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora viridis DSM 43017] Length = 153 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + LL ++ L+ G +S +V R Sbjct: 17 SRRASRQRAVELLYEAALRKTDPATLMSERLGSPDVDPISD----YTITLVEGVSENRER 72 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID +L SL R +LRV + ++L+L DV D +D AV AK+ Sbjct: 73 IDELLAEYAQGWSLERMPPVDLAVLRVGLYELLWLDDVPDPVAIDEAVGIAKQ-LSTDDS 131 Query: 121 AKLVNSILRR 130 + VN +L R Sbjct: 132 PRFVNGVLGR 141 >gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7] gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7] Length = 136 Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 7/137 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR+++ + + D+E +++ D + + + Sbjct: 1 MKPAARRKARILALQAVYSWQLSG---NAIADIEQQMLIENDVTKIDVEYFKDLASGVAV 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +D + L + +LR+S ++ + DV ++ +E AK Sbjct: 58 NYKLLDESVSPHLTRPFDDLDMVERAILRLSSYELKFREDVPYKVAINEGIELAK-IFGA 116 Query: 118 RHFAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 117 EDSHKFVNGVLDKAVKH 133 >gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771] gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771] Length = 156 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R ++ +L + I DS + R +V TL L ID V+ Sbjct: 7 RQIAMQILFQIEVGGIDPEEAFKNTVADSTCPVPIME---FARQLVFGTLGHLKEIDRVI 63 Query: 68 DFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L R + L+R+++ +I Y D + + A+E AK K VN Sbjct: 64 SEISKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELAKIFGGEES-GKFVN 122 Query: 126 SILRRVSREKIEL 138 I+ +V ++ E Sbjct: 123 GIIGKVVQKPDEY 135 >gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi CCUG 18818] Length = 165 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 4/139 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR +L +LD+ + + + Q ++ + L Sbjct: 1 MATRTQAREAVIGMLYAYDLGNK---DILDIARSMFEEKKIKNKQQDFAFLLLQGAITNL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID + L R + +LR+ +ILY D V++ A+E K + Sbjct: 58 QSIDEAIIPYLKEWDFSRLGGMEKAVLRLGAYEILYTDTDSPVVINEAIELGKMYGGEDN 117 Query: 120 FAKLVNSILRRVSREKIEL 138 + +N +L +S+ ++ Sbjct: 118 TPRFLNGVLDALSKAHRQM 136 >gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1] gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional antiterminator)(l factor) transcription regulator protein [Methylibium petroleiphilum PM1] Length = 176 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S +R + L + +++ + Q D A+++ + Sbjct: 31 SSRRRSREFALQGLYQWLVSGSEA-VVIEAHMRE--LDGFKQADAAHFDALLHGCVAEAA 87 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DAVL + +L + ++ + D+ ++ AVE AK Sbjct: 88 ALDAVLARHVDRKTTELSPIEHGVLMIGAYELKHCIDIPYRVAINEAVELAKSFGGTDG- 146 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 147 HKYVNGVLDK 156 >gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae PittAA] gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae 6P18H1] gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae PittAA] gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae 6P18H1] Length = 144 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L ++ + E + + D+ R + T+ + Sbjct: 11 SARRRARECTVQALYSWAVSGNTVEQV---ELAFVLDQDMDGVDKPYFRKLFRQTVENIE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + +LR++V ++ + LDV V++ A+E AK + Sbjct: 68 TVDFSISPYTDRAFDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES- 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180] gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180] Length = 171 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 23/157 (14%) Query: 2 KSGMNARLVSSHLLSCVMRKRIS--------------LTCLLDLEYGDSAFRLLSQRDQ- 46 +R ++ L L + G S L+ D+ Sbjct: 11 SPRSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNGVSDEDELAAEDRF 70 Query: 47 ----ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADY 101 L+ ++N + IDA LD L + + +LR+ +IL+ D + D Sbjct: 71 NFNVELLDELLNGVPTHIDAIDAQLDRFLDRPISQVDPVELAILRLGAYEILFSDNIPDR 130 Query: 102 AVVDLAVEQAK---RDKENRHFAKLVNSILRRVSREK 135 ++ AVE K + +++ +++ I RR + + Sbjct: 131 VAINEAVELTKLLGAHEGHKYVNGVLDKIARRKAGDM 167 >gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171] gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB 41171] gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB 41171] Length = 223 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + + L K L+ L + A L IV Sbjct: 1 MA-RSTARKRALNTLYEADEKGQDFLSLLAERIEEPGAQTPLPD----YAIEIVRGVADH 55 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID +L+ + R + +LR++ +I++ DV D +D A+ AK + Sbjct: 56 RREIDYMLNEHSTGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAKTLSDG 115 Query: 118 RHFA 121 A Sbjct: 116 DSPA 119 >gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6] gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6] Length = 171 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ L + + D A+++ + + Sbjct: 28 SARRRSRELALQGLYEWQVGQADSHVVEAHMREQEDHAKC---DTAHFSALLHGCIAQVA 84 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DAVL L + +L + ++ + LDV ++ AVE AK Sbjct: 85 ALDAVLTPHLDRRVQELSPVEHGVLLIGAYELQHCLDVPYKVAINEAVELAKSFGGTDG- 143 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 144 HKYVNGVLDK 153 >gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M] gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M] Length = 144 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MKS +R +++ L + + G F + D + AI++ +R Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEIDAQLRGAQGF---DKADHEHLDAILHGVIRD 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + A + L + + + +L V+ ++ ++D+ V++ AVE AK Sbjct: 58 SEALSADIAPCLDRPIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAVELAKTFGGVD 117 Query: 119 HFA 121 + Sbjct: 118 GYK 120 >gi|294656172|ref|XP_458422.2| DEHA2C16874p [Debaryomyces hansenii CBS767] gi|199430915|emb|CAG86504.2| DEHA2C16874p [Debaryomyces hansenii] Length = 493 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 71/436 (16%), Positives = 134/436 (30%), Gaps = 59/436 (13%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + A+V TL++ I A++ + K +L Q L ++D ++ + Sbjct: 40 IYALVYSTLKYKEHIQAIIRK------SKIKQTL---------QTKKLKISDNLLLLVVH 84 Query: 109 EQAKRDKENRHFAKLV------------NSILRRVSREKIELLQRIAGISIIPEWFKERL 156 + K K + ++ + S+ + Sbjct: 85 DLLFNSKGRIQSGKHPIKDAILQHKTRLQAEFTKLKLKYKAKSAEDLPTSVSSDDETPIR 144 Query: 157 ENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 + P + L IE + E + S Sbjct: 145 WFRVNTIKTTPEKFFQDHPFFAKLEPISSIEIKETGFIYTDDYIPNLYGIHPKEKLTSTA 204 Query: 217 GFAEGVWWVQDASASIPVQLFGTL---NNLSVLDLCAAPGGKTAQLIVS-----GAKVTA 268 + +G +QD ++ P + N++ ++D CAAPG KT + V A Sbjct: 205 AYLKGEVIIQDRASCFPAHILNDDPSDNHIEIIDSCAAPGNKTTHCASYLPRSEDSVVYA 264 Query: 269 LDVSK---RRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPK--KLFDAVLVDAPCSSTGTI 322 + + L+ + + I D P+ ++VD CS +G Sbjct: 265 FERDSNRVKVLKTMCEKATGIKYKNLIQITHADFTSTKPQDFPCVTGLVVDPSCSGSGIF 324 Query: 323 RR-------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEE 375 R DT+ + + A FQ K++ +SF K VV+S CS+ ++E Sbjct: 325 GRAIEDAQSQEQEKEEIDTERLNRLAGFQFKIMKHALSFPKAR-KVVYSTCSIHPHENER 383 Query: 376 VVQKVL-----RSSPIPVELVPLNSAYWKSIDMAMALSP-----EGWIRITPDMLEKIDG 425 VV +L ++S + + + W + E + Sbjct: 384 VVVDLLMDKEIKASGWQLASRDIVISEWPKRGWKEEFTAVCGGNEEECEALAGGCVRATP 443 Query: 426 VSSGMDGFFAVALRRL 441 G GFFA + Sbjct: 444 KEDGGIGFFAACFIKK 459 >gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str. ATCC 3502] gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A str. ATCC 19397] gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A str. Hall] gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F str. Langeland] gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916] gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf] gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum B1 str. Okra] gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str. 657] gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str. ATCC 3502] gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str. ATCC 19397] gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str. Hall] gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str. Langeland] gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str. Okra] gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916] gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf] gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str. 657] gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str. 230613] gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum H04402 065] Length = 143 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLE-----------YGDSAFRLLSQRDQILVRA 51 + +R V+ LL +L L+ D L D V+ Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61 Query: 52 IVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109 I+ ID + L + + R +LR+ ++ + D+ + V+ A+E Sbjct: 62 IIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAIE 121 Query: 110 QAKRDKENRHFAKLVNSILRRV 131 AK+ + A +N +L ++ Sbjct: 122 LAKKYSGEKS-ATFINGVLGKM 142 >gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas naphthalenivorans CJ2] gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2] Length = 173 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 5/133 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + + F + D A+++ + Sbjct: 30 SARTRAREFALQALYQHLVGQNGADSIDAFTRDLVGFH---KADSAHYDALLHGCIESEK 86 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D + +L + +L + + LDV V++ +E AK Sbjct: 87 ALDENITPLLDRKMAEISPVEHAILWIGAYEFTNCLDVPYRVVINECIELAKAFGGTDG- 145 Query: 121 AKLVNSILRRVSR 133 K VN +L +++ Sbjct: 146 HKYVNGVLHKMAP 158 >gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6] gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6] Length = 150 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 9/144 (6%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S R+ + +L V + + + D +R + IV + Sbjct: 1 MASLRHRVRIAALQVLFEVDATDHPIDVVYERRLVDEELPAEGER---FLNQIVFGSWEH 57 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDV---ADYAVVDLAVEQAKRDK 115 +D V++ + + + +LR+++ ++L +V AV++ AVE AK Sbjct: 58 RSYLDGVIEEAAPNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINEAVELAK-HF 116 Query: 116 ENRHFAKLVNSILRRVSREKIELL 139 + + ++ +N +L V Sbjct: 117 GSDNSSRFINGVLGTVVNRYRPGH 140 >gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1] gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1] Length = 167 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 52/142 (36%), Gaps = 8/142 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + L + + + D RAI++ Sbjct: 16 NKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDLYREADAQWFRAILSGV 75 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKR 113 + ID V+ L L R +L+ +LR V ++ DV VV ++ AK Sbjct: 76 IENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKRSDVPVPVVVSEYIDIAKA 135 Query: 114 DKENRHFAKLVNSILRRVSREK 135 KLVN++L RV+R Sbjct: 136 FYGEEEEPKLVNAVLDRVARRM 157 >gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] Length = 146 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 4/137 (2%) Query: 2 KSGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 K AR ++ +L K + L+ D + LS++ I+N ++ Sbjct: 4 KFRKKAREIALKVLYAYDIDKEKDINETLEETISDIR-QNLSEKTLKYAYQIINGVYEYI 62 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENR 118 ID ++ L L R Y + LLR+ ++++ D+ D V ++ AK + Sbjct: 63 DEIDNIIQSHLKDWRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDILDIAKCYNLDE 122 Query: 119 HFAKLVNSILRRVSREK 135 K +N +L ++ ++ Sbjct: 123 KALKFINGVLSKIYKDF 139 >gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1] gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1] Length = 150 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 4/119 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR ++ + + L++ D L + D ++N + + Sbjct: 14 RHRARELAMQGVYEWRLSGKNA-KLIENGTRDEK--SLGRYDTEFFGQLLNGAIAHHEAL 70 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 A + L L +L + ++++ +V V++ AVE AK + Sbjct: 71 SAQIAPHLDRKLDELSPVEYSVLLLGAYELIHHPEVPYRVVINEAVELAKTFGGSDGHK 129 >gi|150866641|ref|XP_001386307.2| hypothetical protein PICST_73698 [Scheffersomyces stipitis CBS 6054] gi|149387897|gb|ABN68278.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 511 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 63/440 (14%), Positives = 132/440 (30%), Gaps = 67/440 (15%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 + A+V+ TL++ I+ ++ S + + + Q+ L ++D ++ L Sbjct: 37 IFALVHSTLKYKEYIEMIIK---KSKIKQ-----------GL-QMKKLKISDELLLLLVH 81 Query: 109 EQA-KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 + + + + ++ + E ++ Sbjct: 82 DLVFSAKGRIQSGKHPIKDAFLQHQTRLQAEFTKMKLKYRVKSAS-EFPTKEADEDETPI 140 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--------------RLKELPESIV 213 + F+ L V E + Sbjct: 141 RWFRINTIKVASPEKVFETNELLKNLQPVNSIDDIKDTGFIYHDEYIPNLYGIHPREKLT 200 Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTL---NNLSVLDLCAAPGGKTAQL-----IVSGAK 265 S + +G +QD ++ P + + V+D CAAPG KT + Sbjct: 201 STQAYIKGEVIIQDRASCFPGYILNQDSGDIHTEVIDACAAPGNKTTHSASFLPEDRSSV 260 Query: 266 VTALDVSKRRLEKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 V A + +R++ L+ ++ + I D P + S +G+ Sbjct: 261 VYAFERDSKRVKILKTMCEKATGKSKKELIQITHADFTTTRPDDFPNVTGFVVDPSCSGS 320 Query: 322 IRRHPDVLWTRDTDDIV---------KSACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQ 371 + ++ ++ K A FQ K++ + P +V+S CS+ Sbjct: 321 GIFGRALEDSQKEEEKQQEIDTTRLNKLAGFQFKIVKHA--LLFPSARKLVYSTCSIHPH 378 Query: 372 DSEEVVQKVL-----RSSPIPVELVPLNSAYWKSIDMAMALSP------EGWIRITPDML 420 ++E VV +L +S +E W+ + E ++ + Sbjct: 379 ENERVVVDLLTDPEIKSRGWHLEDRSKVIPNWERRGWKEEFTSIAGGDNEMCEKLAGGCV 438 Query: 421 EKIDGVSSGMDGFFAVALRR 440 I G GFFA R Sbjct: 439 RSI-PKEDGGIGFFAACFVR 457 >gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces griseoflavus Tu4000] gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces griseoflavus Tu4000] Length = 143 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + ++ ++ + +L + +V Sbjct: 1 MAARNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVSEYTMQLVEGYAEHA 60 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + +LR+ +++++D D V+D V+ AK + Sbjct: 61 KRIDELIGQYSVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFA 121 + Sbjct: 121 SPS 123 >gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola ACS-139-V-Col8] gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola ACS-139-V-Col8] Length = 158 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query: 3 SGMNARLVSSHLLSCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQI--LVRAIVNVTLR 58 + AR V+ L L LD F + + ++N + Sbjct: 7 NRSQARQVAVQALYDYTHFESNNDLDQALDFALESGHFPDQGYDEVANDYLYLLLNGVVD 66 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL---DVADYAVVDLAVEQAKRD 114 L IDA ++ L + +L R +LRV+ ++LY+ DV VD A+E +K Sbjct: 67 HLSEIDAHIEKYLKNWTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEAIELSKFF 126 Query: 115 KENRH 119 +++ Sbjct: 127 SDDKS 131 >gi|301604340|ref|XP_002931821.1| PREDICTED: putative methyltransferase NSUN3-like [Xenopus (Silurana) tropicalis] Length = 322 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 105/295 (35%), Gaps = 23/295 (7%) Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 E L + ++ + +L + + + P Sbjct: 37 SPECWQYAVLLNNFTSPWALEKQLHMKGY--RLLFQEIFCPQTLQCFINGNPGKFPSQRH 94 Query: 221 G-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA--KVTALD--- 270 ++V +AS+ +PV + + LD+CAAPGGK+ + ++ + Sbjct: 95 RTGKLKEYYVLNASSLLPVLALDVRDGENWLDMCAAPGGKSLAFLQCATPGRLHCNEPDL 154 Query: 271 -VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTIRRHPD 327 S+ + L + E+D +D VLVDAPCS+ + D Sbjct: 155 PRSRWLKQTLESFVPETDRNHIFFSELDGRLLGKFHSGFYDKVLVDAPCSNDRSWLFSSD 214 Query: 328 VLWTRDTDDIVKS-ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 V KS Q +LL + ++PGG +V+S C+L + ++ +V+ +L S Sbjct: 215 VQQAAARISQRKSLPVLQTELLRSAVEALRPGGSLVYSTCTLSRAENTDVITNILNSCSN 274 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 V + + A S + A + + PD + F L ++ Sbjct: 275 VVPMDLSSMASALSHEFTFAPGIPHGLLVLPDNGKSWGP-------MFVAKLLKV 322 >gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9] gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9] gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 140 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 7/119 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-QILVRAIVNVTLRFLP 61 + AR +L R ++ + D Y + D + + V + L Sbjct: 2 NRTEAREWVVKMLYQYDISRFPISKIFDNFYKEK-----DPGDQKEYIENTVKGAIEHLE 56 Query: 62 RIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ + L R +LR S+ +++Y ++ ++ AVE AK+ Sbjct: 57 EIDKEIEKYSQNWALNRMPRIDLAILRCSIYEMIYGNIPVNISINEAVEIAKKYSTEDS 115 >gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4] gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4] Length = 145 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 1 MKSGMNARLVSSHLLS----CVMRKRISLTCLLDLEYGDSAFR-LLSQRDQILVRAIVNV 55 M S R ++ L VM L +++ S R +VN Sbjct: 1 MSSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRSFSFAAELVNG 60 Query: 56 TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 + ID ++ + S+ R +LR++V ++ Y D+ ++ A+E AK+ Sbjct: 61 VVANRAAIDQRIEEKSKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKK 120 Query: 114 DKENRHFA 121 + A Sbjct: 121 FGADDSPA 128 >gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum PRL2010] gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum PRL2010] Length = 223 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + + L K L+ L + A L IV Sbjct: 1 MA-RSTARKRALNTLYEADEKGQDFLSLLAERIEEPGAQTPLPD----YAIEIVRGVADH 55 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID +L+ + R + +LR++ +I++ DV D +D A+ AK + Sbjct: 56 RREIDYMLNEHSTGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAKTLSDG 115 Query: 118 RHFA 121 A Sbjct: 116 DSPA 119 >gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068] gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068] Length = 136 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR V +L + D+ + D R ++ Sbjct: 1 MARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVELVD--FARDLLRGVRGRR 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D +L +L R + + +LR+ +IL+ ++ AVE AKR R Sbjct: 59 KELDVLLQQKADHWTLDRMAVTDRNVLRLGAYEILHTQTPQRVAINEAVELAKRF-GARQ 117 Query: 120 FAKLVNSILRRV 131 + VN IL R Sbjct: 118 SPQFVNGILDRF 129 >gi|74146901|dbj|BAE41405.1| unnamed protein product [Mus musculus] gi|74150466|dbj|BAE32268.1| unnamed protein product [Mus musculus] Length = 152 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%) Query: 299 FDYCPKKLFDAVLVDAPCSSTGTI-RRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 FD VLVDAPCS+ + Q +L+ I ++P Sbjct: 1 MGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKAAYRIHQRKNLPVLQVELVRSAIKALRP 60 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGW-IRIT 416 GG++V+S C+L K ++++V+ +VL S V + A S D A + + + + Sbjct: 61 GGLLVYSTCTLSKAENQDVISEVLTSDSNIVPVDISGIARTFSQDFTFAPTDQKCSLLVI 120 Query: 417 PDMLEKIDGVSSGMDGFFAVALRR 440 P+ + + L++ Sbjct: 121 PEKGKAWGP-------MYIAKLKK 137 >gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti MAFF303099] gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099] Length = 155 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + + + D RAI+ Sbjct: 5 NKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGALYREADAQWFRAILTGV 64 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 + ID V+ L L R +L+ +LR V +++ DV +V V+ AK Sbjct: 65 VEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSEYVDIAKA 124 Query: 114 DKENRHFAKLVNSILRR 130 KLVN++L R Sbjct: 125 FY-EEDEPKLVNAVLDR 140 >gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236] gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236] Length = 138 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA+++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVHAASLDALME 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQLEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|194759190|ref|XP_001961832.1| GF15166 [Drosophila ananassae] gi|190615529|gb|EDV31053.1| GF15166 [Drosophila ananassae] Length = 506 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 16/204 (7%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRC 281 ++ D +++P VLD CA+PGGK + ++ D+ + RL KLR Sbjct: 276 FMMDGGSTLPPLFLQVQPGERVLDACASPGGKSLVMLQTLHVDQLVCNDIQESRLNKLRK 335 Query: 282 NLD--------RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 + R + DA + FD +LVD PC++ + ++ Sbjct: 336 VMQEYLFDFKERWAGKRLIFSQSDARNLGDYDSFDKILVDVPCTTDRHVLNEQDNNIFKP 395 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ I Sbjct: 396 TRIKERLRIPELQAGILTNCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKAFAEHNIT 455 Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411 + L+ D+ P+G Sbjct: 456 ATIKDLSQQTALFSDVFKFEHPKG 479 >gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance protein B) [Herminiimonas arsenicoxydans] gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB) [Herminiimonas arsenicoxydans] Length = 156 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + + + F + D A++ T++ + Sbjct: 15 TPRHRAREFALQGLYQWLLNNEDVRTIENHIRQAHGF---DKADAEHFDALLYGTVKQVG 71 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 + A L ++ + L + ++ ++++ V++ AVE K Sbjct: 72 ELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVELTKSFGGIDG- 130 Query: 121 AKLVNSILRRV 131 K VN +L + Sbjct: 131 HKYVNGVLDKF 141 >gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836] gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836] Length = 136 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 7/123 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + + + L D+ + A+V + Sbjct: 1 MSARSKARKRALDVLYESEVRGLPVGGTLADRVADNDPPVNE-----FTVALVEGVAEHI 55 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID +L +L R + +LR+ V ++L+ + V D V AV A+ + Sbjct: 56 AAIDDLLSTHSVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVALARDLSTDE 115 Query: 119 HFA 121 A Sbjct: 116 SPA 118 >gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum magnetotacticum MS-1] Length = 169 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 + ARL L + + L + + + R ++ Sbjct: 14 NTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDGVVHPPAETAFFRDVLRGA 73 Query: 57 LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 + ID LD L L R + L+ +LR ++++ DV A + V+ A Sbjct: 74 VEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKDVPARAAISEYVDVAHS 133 Query: 114 DKENRHFAKLVNSILRR 130 +VN++L R Sbjct: 134 FYGGDE-PGMVNAVLDR 149 >gi|322822037|gb|EFZ28209.1| hypothetical protein TCSYLVIO_5570 [Trypanosoma cruzi] Length = 339 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 30/284 (10%) Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQD 227 + + + + L G + + F ++ D Sbjct: 51 LWNRFCQLPFAKVMANMKRMDEESLLQVFRCQEGC------EVAPPASDAFNVKAYYPLD 104 Query: 228 ASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKR------RLEKLRC 281 ++++ V+ VLDLCAA GG + + + AL V++ RL + Sbjct: 105 YASALVVEQLEVGAFDRVLDLCAASGGNSIGIAQFLSADGALTVNEPNYERSVRLRRNIK 164 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST-GTIRRHPDVLWT---RDTDDI 337 + I + +A + ++ VLVDAPCS+ ++R + Sbjct: 165 EYIPSNYVPVTITQRNAETWYAPSMYHRVLVDAPCSAERYLLQRDGGAPVSPKMWTEQTS 224 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 ++ + LLL+ + +PGG VV+S SL +++ V+ LR + VE+ P Sbjct: 225 LELSRRGCVLLLRALETCRPGGRVVYSTRSLSPLENDGAVEDALRRTRCQVEVHPTTLCN 284 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + PD + F + ++ Sbjct: 285 MGEKTRYGHI-------VLPDTAGGFGPL-------FCCVIHKV 314 >gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 141 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S + E + + D R + T+ + Sbjct: 9 SPRRRARECAVQALYSWAISKNSPEIV---ELNFITEQDMKGVDTPYFRKLFRQTVENVE 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA + + L +L + +LR++V ++ + +V V++ A+E AK + Sbjct: 66 AVDATMQYYLDRTLEELDPIEKAILRLAVYELQFEANVPYKVVINEAIEVAKVFGADES- 124 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 125 HKYINGVLDK 134 >gi|27468123|ref|NP_764760.1| transcription antitermination protein NusB [Staphylococcus epidermidis ATCC 12228] gi|57867014|ref|YP_188662.1| transcription antitermination protein NusB [Staphylococcus epidermidis RP62A] gi|251810937|ref|ZP_04825410.1| transcription antitermination protein NusB [Staphylococcus epidermidis BCM-HMP0060] gi|282876054|ref|ZP_06284921.1| transcription antitermination factor NusB [Staphylococcus epidermidis SK135] gi|293366519|ref|ZP_06613196.1| N utilization substance protein B [Staphylococcus epidermidis M23864:W2(grey)] gi|32129816|sp|Q8CP37|NUSB_STAES RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71153023|sp|Q5HP28|NUSB_STAEQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27315669|gb|AAO04804.1|AE016748_38 transcription termination factor [Staphylococcus epidermidis ATCC 12228] gi|57637672|gb|AAW54460.1| N utilization substance protein B [Staphylococcus epidermidis RP62A] gi|251805617|gb|EES58274.1| transcription antitermination protein NusB [Staphylococcus epidermidis BCM-HMP0060] gi|281295079|gb|EFA87606.1| transcription antitermination factor NusB [Staphylococcus epidermidis SK135] gi|291319288|gb|EFE59657.1| N utilization substance protein B [Staphylococcus epidermidis M23864:W2(grey)] gi|329725378|gb|EGG61861.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU144] gi|329735255|gb|EGG71547.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU045] gi|329737366|gb|EGG73620.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU028] Length = 129 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +AR+ + L + K LT +E+ L D + +V Sbjct: 2 SRKDARVQAFQTLFQLEIKETDLTIQEAIEFIKDDHSDL---DFDFIYWLVTGVKDHQIV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L S+ R S + +LR++ +IL+ D VV+ AVE K+ ++ H+ Sbjct: 59 LDETIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRRVSR 133 VN +L ++ Sbjct: 119 -FVNGVLSNIND 129 >gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10 bacterium 'Dutch sediment'] Length = 143 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 5/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ LL + L A + L +V TL+ Sbjct: 1 MGKRHRARELALSLLYQLEF--YPLEAFEVQSAAFWADHPAGPEIRSLTDELVQGTLQHQ 58 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ID VL + L R +LR++ ++L Y +D A+E AK + Sbjct: 59 KPIDEVLASHVEHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIELAKAF-GGK 117 Query: 119 HFAKLVNSILRR 130 VN +L + Sbjct: 118 DSGAFVNGVLDK 129 >gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula bermudensis HTCC2503] gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula bermudensis HTCC2503] Length = 166 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D AIV + Sbjct: 19 ARLGAVQALYQMEHAGTGVEAVIREFVDHRLGGEMDGSALHEADDEFFAAIVRGVVEGQR 78 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK-EN 117 RID + L +L R + + +LR + +++ D+ VVD VE A + Sbjct: 79 RIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPDIPWRTVVDEYVELANSFFEKG 138 Query: 118 RHFAKLVNSILR 129 + +N++L Sbjct: 139 EAEPRFINAVLD 150 >gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1] gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1] Length = 162 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +R ++ + ++ + + + +S D++ R ++ + Sbjct: 23 RSASRGLALQAIYQWQMNHSAVNEIETQFTLE---QDMSACDKVYFRDLLQGVTAKAKEL 79 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAK 122 D++ + +L +L +LR+ ++ + LDV ++ +VE AK K Sbjct: 80 DSLFEELLDRALSELDAIELAVLRIGSYELAHRLDVPYRVAINESVELAKSF-GASESHK 138 Query: 123 LVNSILRR 130 VN IL + Sbjct: 139 YVNGILDK 146 >gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71] gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71] Length = 150 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 4/119 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L + T + D F ++ D +A+++ + + Sbjct: 13 RRKARHYALQALYQWHMAGATATDIEAEFRTDYDFSVV---DLEYFQALIHGVPPLVEEL 69 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 D++L+ +L + + LLR+ ++ +DV V++ +V AK+ + Sbjct: 70 DSLLEPLLDREIRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALAKKFGAAESYK 128 >gi|308801991|ref|XP_003078309.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) (ISS) [Ostreococcus tauri] gi|116056760|emb|CAL53049.1| tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) (ISS) [Ostreococcus tauri] Length = 533 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 60/260 (23%), Positives = 100/260 (38%), Gaps = 30/260 (11%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIV 261 + + + G +Q ++ +P + +D CAAPG KT Q ++ Sbjct: 220 VFPAGTDLHAHRLVKSGGVVLQGRASCLPAAALAPERGWACIDGCAAPGNKTTQLAAMVG 279 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAE-DIIEMDAFDYCPKKLF----DAVLVDAPC 316 V A D +RL++L+ N +A D P A+L+D C Sbjct: 280 REGGVYAFDADAKRLKRLKENATTTGSHAIIRAKCQDFLTVDPANQQYASVRALLLDPSC 339 Query: 317 SSTGTIRRHPDVLWT---------------RDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 S +GT D++ D D + K A FQ+K L +F + V Sbjct: 340 SGSGTEVNRGDIMLREALCDDNDDENEVDAADHDRVEKLAAFQKKALTHAFNFPEVQ-RV 398 Query: 362 VFSNCSLDKQDSEEVVQKVL-RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +S CS+ ++++EEVV+ V+ ++ +LV A+ + LS L Sbjct: 399 SYSTCSVYEKENEEVVRDVMGAANERGFKLVHALPAWHRRGIAIDGLSESQAR-----CL 453 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + D M+GFF R Sbjct: 454 IRADPTEDDMEGFFVAVFER 473 >gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17] gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17] Length = 223 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 8/124 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + + L K L+ L + A L IV Sbjct: 1 MA-RSTARKRALNTLYEADEKGQDFLSLLAERIEEPGAQTPLPD----YAIEIVRGVADH 55 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID +L+ + R + +LR++ +I++ DV D +D A+ AK + Sbjct: 56 RREIDYMLNEHSTGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAKTLSDG 115 Query: 118 RHFA 121 A Sbjct: 116 DSPA 119 >gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14] gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14] Length = 147 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + + +L S +V Sbjct: 1 MAARNTARKRAFQILFEGDQRGVGVLTVLADWVRLSRSDTRQPPVSEYTMQLVEGYAEHA 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID +L + +L R + +LR+ +++++D D V+D V+ AK + Sbjct: 61 TRIDELLAQYAVGWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQLAKEFSTDE 120 Query: 119 HFA 121 + Sbjct: 121 SPS 123 >gi|195350281|ref|XP_002041669.1| GM16796 [Drosophila sechellia] gi|194123442|gb|EDW45485.1| GM16796 [Drosophila sechellia] Length = 503 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 12/172 (6%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT--AQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++++P VLD CA+PGGKT + + D+ + RL KL Sbjct: 273 FMMDGASTLPPLFLQVKPGERVLDACASPGGKTLLMLQTLHLDHMVCNDIQESRLNKLRK 332 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 DR DA + + FD +LVD PC++ + ++ Sbjct: 333 VMQEYLFDYKDRWAGKRLIFSHSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 392 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ Sbjct: 393 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 444 >gi|195159596|ref|XP_002020664.1| GL15584 [Drosophila persimilis] gi|194117614|gb|EDW39657.1| GL15584 [Drosophila persimilis] Length = 504 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 16/204 (7%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKL-- 279 ++ D ++++P VLD CA+PGGK+ L+ + D+ + RL +L Sbjct: 274 FLMDGASTLPPLFLQVQPGERVLDACASPGGKSLLLLQTLHLDQLVCNDIQESRLNRLRR 333 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 R + DA + + +D +LVD PC++ + + ++ Sbjct: 334 LMQEFLFDYKQRSAARHLIFSQSDARNLDEYEQYDKILVDVPCTTDRHVVMEQDNNIFKP 393 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ I Sbjct: 394 SRIKERLRIPELQAGILTNCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFVEHGIT 453 Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411 + L+ D+ P+G Sbjct: 454 ATIKDLSRHTELFSDVFKFEHPKG 477 >gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +R + L + +++ ++ + D + A++ T++ Sbjct: 16 TPRHRSREFALQGLYQWLLNNEDA-GVIEAHLREA--HGFDKADAVHFDALLYGTIKQAD 72 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 + L ++ L + +L + ++ ++++ +++ +VE AK Sbjct: 73 ALRTDLLPLIDRPLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVELAKSFGGIDG- 131 Query: 121 AKLVNSILRRV 131 K VN +L + Sbjct: 132 HKYVNGVLDKF 142 >gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str. Kyoto] gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str. Kyoto] Length = 143 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLE-----------YGDSAFRLLSQRDQILVRA 51 + +R V+ LL +L L+ D L D V+ Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61 Query: 52 IVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109 I+ ID + L + + R +LR+ ++ + D+ + ++ A+E Sbjct: 62 IIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAIE 121 Query: 110 QAKRDKENRHFAKLVNSILRRV 131 AK+ + A +N +L ++ Sbjct: 122 LAKKYSGEKS-ATFINGVLGKM 142 >gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus pseudoporcinus SPIN 20026] gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus pseudoporcinus SPIN 20026] Length = 143 Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 S + R + L + L+ + +S +D + +VN Sbjct: 7 NSRRDLRERAFQALFNMEHGG----DFLESSRFAYDYDKVSDQDHPLDVPAFLLTLVNGV 62 Query: 57 LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 +DA++ L + R S + +LR+ + +I Y D D ++ +E AK+ Sbjct: 63 NNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEIAKK 122 Query: 114 DKENRHFAKLVNSILRRV 131 + AK +N +L + Sbjct: 123 Y-SDETSAKFINGLLSQF 139 >gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis LMG 19424] gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424] Length = 172 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ L + R + ++ + ++ D+ A++N +R Sbjct: 33 SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEA 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 R+ A + L S+ + L V ++++ LD+ V++ AVE K + Sbjct: 90 RLTAAFEPFLDRSVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGY 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|115476098|ref|NP_001061645.1| Os08g0365900 [Oryza sativa Japonica Group] gi|38636850|dbj|BAD03090.1| putative nucleolar protein [Oryza sativa Japonica Group] gi|113623614|dbj|BAF23559.1| Os08g0365900 [Oryza sativa Japonica Group] gi|215717005|dbj|BAG95368.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640447|gb|EEE68579.1| hypothetical protein OsJ_27075 [Oryza sativa Japonica Group] Length = 589 Score = 84.2 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 8/159 (5%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ FD VL+DAPCS+ G R + + A +QR Sbjct: 426 PGRNNCSGGRVENSKGFLPNSFDRVLLDAPCSALGL--RPRLFAGEETLESLRNHATYQR 483 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP----IPVELVPLNSAYWKSI 401 ++ Q + V PGG++V+S C+++ ++E +V+ L S Sbjct: 484 RMFDQAVKLVHPGGVIVYSTCTINPGENEALVRYALDKYKFLSLGSQHPKVGGPGIVGSF 543 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMD--GFFAVAL 438 + + E W+ L + SS +D GFF Sbjct: 544 ERSTKKYTEEWLTKHESQLVQRFDPSSTLDTIGFFIAKF 582 >gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter upsaliensis RM3195] gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter upsaliensis RM3195] Length = 132 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S AR LL + + + + R + + ++ N L L Sbjct: 1 MASRHQARQSVISLLYALELNGKN-DNFITEFLQEKKIRNEA---KNFTLSLYNGVLEHL 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D +D L + + + + + +LR+ ++L+ D V++ AVE K N + Sbjct: 57 QSLDECIDVFLNENKIHQIGHIERAILRLGAFELLHTDTLAAIVINEAVELTKEM-ANEN 115 Query: 120 FAKLVNSILR 129 KL+N +L Sbjct: 116 APKLINGVLD 125 >gi|194853921|ref|XP_001968251.1| GG24769 [Drosophila erecta] gi|190660118|gb|EDV57310.1| GG24769 [Drosophila erecta] Length = 503 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 16/204 (7%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++++P VLD CA+PGGK + + D+ + RL KL Sbjct: 273 FMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRK 332 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 +R + DA + + FD +LVD PC++ + ++ Sbjct: 333 VMQEYLFDYKERWAGKRLIFSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 392 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ I Sbjct: 393 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFTEHGIT 452 Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411 + L+ D+ P+G Sbjct: 453 ATIKDLSRHTALFSDVFKFEHPKG 476 >gi|70922635|ref|XP_734453.1| sun-family protein [Plasmodium chabaudi chabaudi] gi|56507206|emb|CAH82024.1| sun-family protein, putative [Plasmodium chabaudi chabaudi] Length = 109 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 28/135 (20%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 D V+VDAPC+ TG +RR+P++ + + + + QRK+ + + ++K G + + C Sbjct: 2 MDIVVVDAPCTGTGALRRNPEMKYKFTNEKLYEYMDLQRKIFEKALFYLKKNGKIAYITC 61 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGV 426 S+ ++ + + + + P +S Sbjct: 62 SILDAENVHQAKYFCQKHNLYLSEPPFHS----------------------------LPQ 93 Query: 427 SSGMDGFFAVALRRL 441 S MDGFF R Sbjct: 94 SKSMDGFFLAIFERK 108 >gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum JL354] Length = 153 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 8/128 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 + ARL + L + L LLD + R + + IV Sbjct: 9 TARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEGDTYADAEVPFFDDIVRGV 68 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ID L L SL R ++ Q+LR +++ D+ AV+ V+ AK Sbjct: 69 DARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARADIPTGAVISEYVDVAKA 128 Query: 114 DKENRHFA 121 ++R Sbjct: 129 FFDDREAK 136 >gi|255577546|ref|XP_002529651.1| conserved hypothetical protein [Ricinus communis] gi|223530877|gb|EEF32738.1| conserved hypothetical protein [Ricinus communis] Length = 392 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 22/166 (13%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSAC---- 342 L ++ ++ + +D VLVDA C+ G+IR + Sbjct: 240 GLSKSELYQIVCGNELSNCGYDKVLVDAECTHDGSIRHIQKFEHWGWETLYQRVLQAERS 299 Query: 343 -----FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q KLL G ++ GG+VV+S CSL +E+VVQ+ L+ +P + + Sbjct: 300 DSLTSLQLKLLTNGFKLLRVGGLVVYSTCSLTVSQNEDVVQQFLKENPSAGREIDTAQNW 359 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 G I+ + D V+S G F +L Sbjct: 360 P---------CKSGRIQ----KTLRFDSVTSQTSGLFVARFIKLAT 392 >gi|6324306|ref|NP_014376.1| hypothetical protein YNL022C [Saccharomyces cerevisiae S288c] gi|1730712|sp|P53972|YNC2_YEAST RecName: Full=Uncharacterized protein YNL022C gi|1301853|emb|CAA95884.1| unnamed protein product [Saccharomyces cerevisiae] gi|151944502|gb|EDN62780.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|285814629|tpg|DAA10523.1| TPA: hypothetical protein YNL022C [Saccharomyces cerevisiae S288c] Length = 490 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 56/351 (15%), Positives = 104/351 (29%), Gaps = 75/351 (21%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 W + + + + + + W+ + + I Sbjct: 154 RWIRINPLKCHPNGETEPVLAELRKKFTLKV------DKWSELVPGSIYYDEFIPNLFGI 207 Query: 210 ES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------- 259 I + + G +QD ++ P + + V+D C+APG KT Sbjct: 208 HPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPE 267 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFD---AVLVD 313 + ++ A + R + L+ + + D + + +VD Sbjct: 268 PPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVD 327 Query: 314 APCSSTGTIRRHPDVLWTRD-------------------------TDDIVKSACFQRKLL 348 CS +G R + R + K + FQ +++ Sbjct: 328 PSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMV 387 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI---------PVELVPLNSAYWK 399 +SF +V+S CS+ +++E VV +L + E++P K Sbjct: 388 KHAMSFPAAK-KIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKREVIPSWPRRGK 446 Query: 400 SIDMAMALSP----------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + EG IR P S G GFFAV R Sbjct: 447 VEEFEEVFRDGVTYDPQQLAEGCIRALP--------KSDGGIGFFAVCFER 489 >gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces avermitilis MA-4680] gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces avermitilis MA-4680] Length = 144 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + + +L S +V + + Sbjct: 1 MAARNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVSEYTMQLVEGYAKKV 60 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ + +L R + +LR+ ++L++D D V+D AV+ AK + Sbjct: 61 NRIDELISQYAVGWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQLAKEFSTDD 120 Query: 119 HFA 121 A Sbjct: 121 SPA 123 >gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1] gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1] Length = 171 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 9/130 (6%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLRFLPRI 63 L + L + L +++ + D++ +V +R + Sbjct: 24 LFAVQALYQMDIAATPLDEVVEEFVEHRLEEPEGDNEIFAADKVHFEDVVRGVVREQREL 83 Query: 64 DAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 D ++ L SL R +L+ +LR ++ DV V++ VE A E Sbjct: 84 DVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEGDE- 142 Query: 121 AKLVNSILRR 130 +VN++L R Sbjct: 143 PGVVNAVLDR 152 >gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2083] gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium HTCC2083] Length = 157 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 9/137 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNV 55 MKS AR + L + + ++ + D L ++VN Sbjct: 13 MKS--AARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGAVYEDMEFVEGDVDLFSSLVND 70 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + +ID + D L + R +L+ L R + A+++ D V+ V+ A Sbjct: 71 AVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELVASDTPPKVVIKEFVDIAAA 130 Query: 114 DKENRHFAKLVNSILRR 130 ++ VN++L Sbjct: 131 FFPEGKESRFVNAVLDH 147 >gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196] gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196] Length = 158 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L S + F + D+ +++ L P ++ Sbjct: 24 ARELALQGLYQWCVAGGSAGTIEAQLRDTEEF---PKTDEEYFSRLLHGVLMQAPELEKE 80 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L +L + ++ + ++ AV++ AVE AK K VN Sbjct: 81 IQPCLDRPFNELSPVEISILLLGAYELERHPEIPYRAVINEAVELAKAYGGTHG-HKYVN 139 Query: 126 SILRR 130 +L + Sbjct: 140 GVLDK 144 >gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110] gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110] Length = 181 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + +D D + D A+++ ++ Sbjct: 35 SNRSRAREFALQALYQHLV-GRNDPTEIDHFTRD--LAGFHKADAAHYDALLHGSIEGAE 91 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ++DA++ +L ++ + V + + LDV V++ +E AK Sbjct: 92 QLDALIRPLLDRKFEEISPIEHAVMWIGVYEFQHCLDVPWRVVLNECIELAKEFGGTDGH 151 Query: 121 A 121 Sbjct: 152 K 152 >gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684] gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684] Length = 152 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 57/147 (38%), Gaps = 19/147 (12%) Query: 1 MKSGM--NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL------------LSQRDQ 46 M G N R + +L + + L +L +G+ F LS D Sbjct: 1 MAKGTRRNGREYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSD-DV 59 Query: 47 ILVRA-IVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAV 103 I +V L IDA+L + L R L+R++ +++Y+D V Sbjct: 60 IFFSEQLVKGVYEHLEEIDAMLLDTSKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVV 119 Query: 104 VDLAVEQAKRDKENRHFAKLVNSILRR 130 ++ A+E AKR + +N +L R Sbjct: 120 INEAIEIAKRY-GTKDTPAFLNGVLDR 145 >gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhi] gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 139 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L + + D+EY A + + D + R +++ Sbjct: 1 MKPAARHRARECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L L + +LR+++ ++ DV ++ A+E AK Sbjct: 58 NSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EDSHKFVNGVLDK 129 >gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa 9a5c] gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c] Length = 157 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 5/117 (4%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 + ++ + A+ D +V L +D L L + Sbjct: 33 VYAWQISGGVAKQVIAHFAHEQAY---EVADLAYFEDLVEGVLTHCAELDEKLTPYLDRT 89 Query: 75 LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +LR+ ++LY DV V++ A+ AKR +++ VN +L R Sbjct: 90 IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145 >gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis Bay] gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis Bay] Length = 161 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 7/129 (5%) Query: 7 ARLVSSHLLSCVMRKRIS----LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 AR + +L + S + L ++ +V T Sbjct: 12 AREKAFQVLYGIEFTDSSHLGAVRDAFVEYPRPERQTKLDEKSDTFAWELVKGTWESKAE 71 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +D ++ + + R +LR+ + +IL+ D+ ++ AVE AK + H Sbjct: 72 LDGIIGRFSQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAINEAVELAKEF-GDEHS 130 Query: 121 AKLVNSILR 129 VN IL Sbjct: 131 RNFVNGILD 139 >gi|125986483|ref|XP_001357005.1| GA18402 [Drosophila pseudoobscura pseudoobscura] gi|54645331|gb|EAL34071.1| GA18402 [Drosophila pseudoobscura pseudoobscura] Length = 504 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 16/204 (7%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKL-- 279 ++ D ++++P VLD CA+PGGK+ L+ + D+ + RL +L Sbjct: 274 FLMDGASTLPPLFLQVQPGEKVLDACASPGGKSLLLLQTLHLDQLVCNDIQESRLNRLRR 333 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 R + DA + + +D +LVD PC++ + + ++ Sbjct: 334 LMQEFLFDYKQRSAARHLIFSQSDARNLDEYEQYDKILVDVPCTTDRHVVMEQDNNIFKP 393 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ I Sbjct: 394 SRIKERLRIPELQAGILTNCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFVEHGIT 453 Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411 + L+ D+ P+G Sbjct: 454 ATIKDLSRHTELFSDVFKFEHPKG 477 >gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271] gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271] Length = 146 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 5/141 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + ++ + + L ++ Q + ++ TL Sbjct: 1 MSRRL-ARETALKVLYQIDMTGE-ISEMDKNIEYWAGEFNLPEKHQPFTKQLIEGTLSKK 58 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID ++ +L R + L+R++ ++LYL ++ A+E AK+ + Sbjct: 59 EEIDHMIGQNAHEWALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELAKKFGGDD 118 Query: 119 HFAKLVNSILRRVSREKIELL 139 AK +N IL + ++ + Sbjct: 119 S-AKFINGILDNLMTQEEKEW 138 >gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1] Length = 140 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 5/118 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR +L R+ ++ + + Y ++ + + V + L Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKIFENFYKEND----PGEQKEYIENTVIGAIEHLEE 57 Query: 63 IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ + L R +LR S+ ++ Y ++ ++ AVE AK+ Sbjct: 58 IDKEIERYSQNWALNRMPKIDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYSTEDS 115 >gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus str. Jelinkova 176] gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus str. Jelinkova 176] Length = 143 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 13/138 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 S + R + L + L+ + +S +D + +VN Sbjct: 7 NSRRDLRERAFQALFNMEHGG----DFLESSQFAYDYDKVSDQDHPLDIPAFLLTLVNGV 62 Query: 57 LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 +DA++ L S+ R S + +LR+ + +I Y D D ++ +E AK+ Sbjct: 63 NNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEIAKK 122 Query: 114 DKENRHFAKLVNSILRRV 131 + AK +N +L + Sbjct: 123 Y-SDETSAKFINGLLSQF 139 >gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453] gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453] Length = 152 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 11/142 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR---D----QILVRAIV 53 MK + AR + L + + + + ++A ++R D + V +V Sbjct: 1 MKRRV-AREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGDEVQMKEYVLQLV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQA 111 N T ID +L L + R +Q+LR++V ++ DV V+ A+E + Sbjct: 60 NGTWESKESIDELLAHYLKGWQVSRLSRVDRQILRLAVYELSSREDVPGKVAVNEAIELS 119 Query: 112 KRDKENRHFAKLVNSILRRVSR 133 K K VN +L R+ + Sbjct: 120 K-HFGTDESGKFVNGVLGRMIQ 140 >gi|303389837|ref|XP_003073150.1| Nop2-like nucleolar protein [Encephalitozoon intestinalis ATCC 50506] gi|303302295|gb|ADM11790.1| Nop2-like nucleolar protein [Encephalitozoon intestinalis ATCC 50506] Length = 364 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 19/258 (7%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVL 246 E L G+ + IV + G + +Q+ S+ +P + V+ Sbjct: 122 EKDIDFLKHEKTCIDGVYKILDSKDIVFSEEYKNGKFLIQNISSCLPAHILNPDEGSRVI 181 Query: 247 DLCAAPGGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 D C+APG KT+ ++ + K+ A + K R + L+ L+RL + D+IE D P Sbjct: 182 DTCSAPGNKTSQLAMIMKNTGKIYAFERDKARAKTLKIRLERLGVNNTDVIEEDFMKTNP 241 Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 + D + S +G+ + D + I FQ ++ + F KP +++ Sbjct: 242 EDFKDIRYILCDPSCSGSGMHFG---YKMDKERIEGLKSFQVGIVKHALKF-KPE-KLMY 296 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKI 423 S CS K++ EEVV+++L+ EL ++ + S S + + Sbjct: 297 SVCSNHKEEGEEVVEEILK--DSEYELEDISMFWGPSCPSEFPFSRN---------VIRC 345 Query: 424 DGVSSGMDGFFAVALRRL 441 +G GFF RR Sbjct: 346 RRDDNGATGFFIALFRRK 363 >gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 131 Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 7/133 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S + R ++ L + + + Y + + D + +V+ L Sbjct: 1 MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYRELLDEDNNDSDLSYLNELVDGVLDH 57 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 ID + L + + R + +LR+++ +I Y DVA V+ AVE AK ++ Sbjct: 58 QSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYSDVASKIAVNEAVELAKEFSDD 117 Query: 118 RHFAKLVNSILRR 130 + + VN+IL+ Sbjct: 118 KSYK-FVNAILQN 129 >gi|328947921|ref|YP_004365258.1| Fmu (Sun) domain protein [Treponema succinifaciens DSM 2489] gi|328448245|gb|AEB13961.1| Fmu (Sun) domain protein [Treponema succinifaciens DSM 2489] Length = 277 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 9/196 (4%) Query: 200 TGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL 259 I+ E++ + + + D ++ + ++ +LDLCAAPGGKT L Sbjct: 15 WEKIKSSLASETLHAELSYKNCESYFLDPASIVAALCLPVKDSEKILDLCAAPGGKTLVL 74 Query: 260 IVSGAKV---TALDVSKRRLEKLRCNLDRLHLY----AEDIIEMDAFDYCPK--KLFDAV 310 + + + S R ++L ++ + D +C + + ++++ Sbjct: 75 AGNKNDDAVLFSNERSPSRKKRLSKVVESSLPPEISCNVKVCLSDGASWCRRVSECYESI 134 Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 L+DAPCSS + L I + Q LL +K G ++++ C+L Sbjct: 135 LLDAPCSSERHVLNDKKYLEQWTPSRIKTVSMEQWALLSCAFRLLKKNGFLLYATCALCP 194 Query: 371 QDSEEVVQKVLRSSPI 386 Q+++ VV K+L+ P Sbjct: 195 QENDGVVSKLLKKFPD 210 >gi|300312879|ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075664|gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 5/131 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + F + D ++ +R Sbjct: 15 TPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGF---DKADAEHFDTLLTGAIRDAE 71 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ++ A L ++ + L + ++ ++++ V++ AVE K Sbjct: 72 KLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDG- 130 Query: 121 AKLVNSILRRV 131 K VN +L R Sbjct: 131 HKYVNGVLDRF 141 >gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio aespoeensis Aspo-2] gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio aespoeensis Aspo-2] Length = 151 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%) Query: 8 RLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L + + E S+ + RA+V + L RIDA Sbjct: 17 RTLAFQVLYGTHFDDPKNPVDIGTAFERNPMVEEQESETAREFARALVLGVDKNLARIDA 76 Query: 66 VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + R +LR+S+ ++L+ D+ A ++ A+E +K + V Sbjct: 77 AIGEHSQHWKFDRIAVIELSILRLSLYEMLFTDIPVKAAINEAIELSK-LFGDEKSRGFV 135 Query: 125 NSILR 129 N IL Sbjct: 136 NGILD 140 >gi|159482044|ref|XP_001699083.1| hypothetical protein CHLREDRAFT_177717 [Chlamydomonas reinhardtii] gi|158273146|gb|EDO98938.1| predicted protein [Chlamydomonas reinhardtii] Length = 474 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 9/126 (7%) Query: 301 YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 P + FDA+L+DAPCS+ G P + + + A QR+L+ + ++ GG Sbjct: 312 CFPPESFDALLLDAPCSALGL---RPRLQQQAGALYLRQCAAAQRRLVDGAVRLLRVGGA 368 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V+S C+++ ++E VV+ +L S + LVP + +A R+ P +L Sbjct: 369 MVYSTCTINPGENEAVVRYLLDSYGGSMRLVPAGPPFLGGPGLA------HDRRVRPAVL 422 Query: 421 EKIDGV 426 + G Sbjct: 423 LRRQGH 428 >gi|281202268|gb|EFA76473.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500] Length = 760 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 17/110 (15%) Query: 341 ACFQRKLLLQGI--SFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNS 395 A FQ ++ VK VV+S CS+ + ++E+VVQ+ L LV + Sbjct: 466 ADFQLSIIRHAFAFPCVK---RVVYSTCSIHQVENEDVVQRALSELNKDKETWRLVNILP 522 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL-IQP 444 + KS +++ + E +R++P + GFF ++ +P Sbjct: 523 HWKKSRGLSLFKNSEYCLRLSP--------ANDNTIGFFVACFEKINPKP 564 >gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium profundum SS9] gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9] Length = 151 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 15/144 (10%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQI 47 MK NAR + + + ++ + D F + D Sbjct: 1 MKPAARRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDLN 60 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106 ++N ++ +D+ + L L LLR+++ ++ DV V++ Sbjct: 61 YFHDLLNGVVQNHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMTKREDVPYKVVINE 120 Query: 107 AVEQAKRDKENRHFAKLVNSILRR 130 A+E AK K VN +L + Sbjct: 121 AIELAK-IFGAEDSHKFVNGVLDK 143 >gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp. TrichCH4B] gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp. TrichCH4B] Length = 164 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 7/137 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVT 56 ++ ARL + L + + S ++ ++ D L R +VN Sbjct: 19 QARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDEYAEGDTKLFRKLVNDA 78 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + + +ID + D L + R +L+ L R + A+ + D V++ V+ A+ Sbjct: 79 VNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESDTPVKVVINEYVDIARAF 138 Query: 115 KENRHFAKLVNSILRRV 131 A VN++L + Sbjct: 139 FPEGREASFVNAVLDHM 155 >gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1] gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1] Length = 165 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 4/145 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + L V+ + L + + L + D + +V+ T R L Sbjct: 2 TRHEARECALQALC-VLDVQRDLGSAEAIASVLAERGLDAGGDWAYIEELVDGTRRHLGE 60 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID +L + S R + +LR++ ++L+ ++ + +D AV+ AK Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIAKTF-ATEQS 119 Query: 121 AKLVNSILRRVSREKIELLQRIAGI 145 + VN +L ++ + + A Sbjct: 120 GRFVNGVLAKLLPAVADRRRADACE 144 >gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON] gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON] Length = 134 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + L+ + + +L+ + A L++ D + IV + L Sbjct: 2 SRRQARQDAVCLMYEIDMQDGDSDDILERFFNTHA---LNEADAKYIDEIVKLALEHRDD 58 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ID ++ + +LR++ A++LY+ V +D AVE AKR + Sbjct: 59 IDRGIEQSCGRKIEYLAKMDLAILRIAAAEMLYMPSVPHRVSIDEAVELAKRY-GDDMSP 117 Query: 122 KLVNSI 127 +N + Sbjct: 118 TFINGV 123 >gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043] gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043] Length = 137 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 4/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ ++ LLD D R + +V + Sbjct: 1 MSARSKARARALDILFEADQRGLNAEVLLDERLRDPESRAGNN---PYTADLVRGVVGRW 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 IDA L +L R + +LRV ++L+ D A + Sbjct: 58 RDIDAALTDYSQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVALATELSTDE 117 Query: 120 FAKLVNSILRR 130 VN +L R Sbjct: 118 SPGFVNGLLAR 128 >gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS] gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS] Length = 159 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +R + L + + +++ F + D +V+ T+ Sbjct: 18 SPRHRSREFALQGLYEWLLNKDDAPVIIEHIRQAHGF---DKADTGHFVTLVSGTIHQAE 74 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 + + + + SL +L + ++ ++++ V++ AVE K Sbjct: 75 TLRSEIVPHIDRSLDELSPVEHAILLLGAYELKNHIEIPYRVVINEAVELTKSFGGIDGH 134 Query: 121 A 121 Sbjct: 135 K 135 >gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter shibae DFL 12] gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter shibae DFL 12] Length = 159 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 7/133 (5%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVTLRFL 60 ARL + L + S ++ + + + L R V + + Sbjct: 17 AARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYEEGEMAEGHVTLFRTTVGEAVNWQ 76 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +ID + D L + R +L+ L R + A+++ D V++ V+ A+ + Sbjct: 77 AKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVRADTPPKVVINEYVDLARAFFPDG 136 Query: 119 HFAKLVNSILRRV 131 K VN++L + Sbjct: 137 KEPKFVNAVLDHM 149 >gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 141 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S + E + + D R + T+ + Sbjct: 9 SPRRRARECAVQALYSWAISKNSPEIV---ELNFITEQDMKGVDTPYFRKLFRQTVENVE 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA + L +L + +LR++V ++ + +V V++ A+E AK + Sbjct: 66 AVDATMQCYLDRTLEELDPIEKAILRLAVYELQFEANVPYKVVINEAIEVAKVFGADES- 124 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 125 HKYINGVLDK 134 >gi|321259261|ref|XP_003194351.1| nucleus protein [Cryptococcus gattii WM276] gi|317460822|gb|ADV22564.1| nucleus protein, putative [Cryptococcus gattii WM276] Length = 542 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 86/252 (34%), Gaps = 38/252 (15%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTAQL---IVSGAKVTAL 269 + G +QD ++ P ++ LD +APG KT+ + + + K+ A Sbjct: 213 EWYEGGGVILQDKASCFPARVLMEGWVEGEGECLDATSAPGNKTSYVSALMANRGKLHAF 272 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR- 324 + S R + L L + D PK +L+D CS +G + R Sbjct: 273 ERSPNRFKTLEKMLAKARCSNVQAQRADFTGSDPKSKEFRNVTRILLDPSCSGSGIVNRL 332 Query: 325 ------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 ++ + K A FQ +++L F +V+S CS+ ++ E VV Sbjct: 333 DYLVDDDAQESDSKTER-LEKLASFQLQMILHAFKF-PSAQRIVYSTCSIHAEEDERVVM 390 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------GWIRITPDMLEKIDGVSS 428 L+S+ L S PE G IR P Sbjct: 391 AALQSNIAKENGWGLASRESVLPKWERRGRPEEMEGDEELSNGVIRCLP---------ED 441 Query: 429 GMDGFFAVALRR 440 +GFF R Sbjct: 442 KTNGFFVACFVR 453 >gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC 19860] Length = 186 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R + L + R ++ + D A+++ + Sbjct: 37 SARSRSRAFALQALYQHIVGR---NEATAIDVFTRDLSGFHKADAAHYDALLHGCIENAE 93 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA++ L +L + + V + + LDV V++ VE AK Sbjct: 94 TLDALITPKLDRTLEEISPIEHATMWIGVYEFQHCLDVPWRVVINECVELAKEFGGTDGH 153 Query: 121 A 121 Sbjct: 154 K 154 >gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA] gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA] gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens KN400] Length = 138 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R ++ +L LL+L +S + + +V L Sbjct: 1 MGARRLGRELALQMLYSRDYAAGEAAPLLELVLDESEPGAAAG--RSFADDLVRGVLEHR 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID + + S+ R +LR+++ ++L+ D+ ++ A+E AK+ Sbjct: 59 QEIDTAITGASKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIEVAKKF-GTE 117 Query: 119 HFAKLVNSILR 129 +N IL Sbjct: 118 DSPAFINGILD 128 >gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963] gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963] Length = 147 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 6/142 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR+V+ L L++ + R L + + + + L I Sbjct: 5 RRQARMVALQTLYEYDMVHHDP---LEILQRHAEERNLHAKVVEYAQELAEGVCKHLADI 61 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 DA + L + + +LR+++ +IL+ + V A ++ AVE AK + + Sbjct: 62 DAHIQSAAREWPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAVELAK-LFGSDTSS 120 Query: 122 KLVNSILRRVSREKIELLQRIA 143 + +N +L + + A Sbjct: 121 RFINGVLGTIFNRAQQQPTPKA 142 >gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes DSM 1740] gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes] Length = 135 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + R Q + + T+ L Sbjct: 1 MATRAQAREAVVSLLYAYDMGNT---EIRKFAIELLEEKRIKNRQQEFALELFDGTIAHL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID + L R + +LR+ +I+Y V +++ AVE +K N + Sbjct: 58 GEIDEEIKKHLKEWDFSRIGDMERAILRLGTFEIVYSGVDRAVIINEAVELSKTF-GNDN 116 Query: 120 FAKLVNSILR 129 + VN +L Sbjct: 117 SPRFVNGVLD 126 >gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542] gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542] Length = 138 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 5/121 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ + LL + + IV L L Sbjct: 1 MGARTKARKRALDVLFEAEQRHLDPITLLADRVAEPGTEASLPQ---YSVDIVEGVLEQL 57 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID +L+ SL R + LLR+ +IL+ D V D +D AVE ++ + Sbjct: 58 DRIDELLETYSHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAVELSRSLSTDD 117 Query: 119 H 119 Sbjct: 118 S 118 >gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length = 150 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 8/134 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R + +L ++ +++ + + ++ + +V + Sbjct: 16 TARSRSRQRAVEILFEAEQRGSTVSEGIRTRRESTDLQVN-----AYTQRLVEGVIADQE 70 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 R+D L SL R + +LRV ++L+ DV D + AV A Sbjct: 71 RLDEALSSYSRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALA-AQLSTDD 129 Query: 120 FAKLVNSILRRVSR 133 + VN +L R+ + Sbjct: 130 SPEFVNGLLGRLQQ 143 >gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160] Length = 135 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + LL ++ + + +V Sbjct: 1 MAARSKARKRAVDVLYEADLRGSDPLELLRERVALASPPIPDHAVR-----LVEGVAEHA 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 R+D ++D S+ R + +LR++V ++L+ DV D V+D AVE A+ + Sbjct: 56 ARVDELIDRHARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVELARSLSTDD 115 Query: 119 HFA 121 A Sbjct: 116 SPA 118 >gi|257457505|ref|ZP_05622673.1| NOL1/NOP2/sun family protein [Treponema vincentii ATCC 35580] gi|257445128|gb|EEV20203.1| NOL1/NOP2/sun family protein [Treponema vincentii ATCC 35580] Length = 293 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 28/241 (11%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSK------- 273 + D ++ Q ++ S LD+CAAPGGKT A + A++ A ++S+ Sbjct: 49 YYLDQASIYAAQTLPPIDEGSYLDMCAAPGGKTLVLASGMGQEAQIQANELSRARRARLL 108 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRD 333 L++ R + Y +D +L+DAPCSS + L Sbjct: 109 TVLDEHLPPDMRARIEVTGYDAATLPRYRQAY-YDRILLDAPCSSERHVITDEKYLACWT 167 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 I A Q LL +KPGG +V++ C+L +++ VVQK+L+ + Sbjct: 168 PARIKMLAQRQWALLSAAFLLLKPGGFLVYATCALADAENDGVVQKLLKKYGTEAAVHNG 227 Query: 394 NSAYWKSIDMAMA-------LSPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 +A + D A ++ E + R PD + + + ++ Sbjct: 228 AAAAPYAADTETAAGNDTKLIASEKTLFGRRFLPDTCTGAGPL-------YFSLIEKINN 280 Query: 444 P 444 P Sbjct: 281 P 281 >gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217] gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217] Length = 160 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVN 54 MKS ARL + L + + + + + + D L R +++ Sbjct: 15 MKS--AARLYAVQALFQMEHSGQTSDVVREEFLDFRFGAEVDEGVDMAEGDVDLFRKLLD 72 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + + +ID + D L + R +L+ L R + A+++ D V+ V+ AK Sbjct: 73 DAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVESDTPPKVVIMEYVDVAK 132 Query: 113 RDKENRHFAKLVNSILRRV 131 +K VN++L + Sbjct: 133 AFYPAGKESKFVNAVLDHM 151 >gi|312087981|ref|XP_003145683.1| hypothetical protein LOAG_10108 [Loa loa] gi|307759152|gb|EFO18386.1| hypothetical protein LOAG_10108 [Loa loa] Length = 389 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 50/145 (34%) Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL------- 393 Q + + + + GI+V+S CSL+ ++E V+ +LRSS +ELV + Sbjct: 5 HKLQVNIAQRAMQLLAVDGIMVYSTCSLNPIENEAVIASILRSSAGALELVDVSQQLPQL 64 Query: 394 ----------------------------------NSAYWKSIDMAMALSPEGWIRITPDM 419 +S + + + E R+ P M Sbjct: 65 KRTSGLSKWRVFDKAMHEYSILEDVVTDQRRYFTSSMFPPNDEEIQKFHLERCFRVLPHM 124 Query: 420 LEKIDGVSSGMDGFFAVALRRLIQP 444 GFF LR+ +P Sbjct: 125 Q--------NTGGFFVAVLRK-SKP 140 >gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586] gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586] Length = 139 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R ++ ++DA + Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGVDIAYFRELLAGVATQAEKLDAQMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR++V ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L + Sbjct: 127 LDKAGPY 133 >gi|242242793|ref|ZP_04797238.1| transcription antitermination protein NusB [Staphylococcus epidermidis W23144] gi|242233929|gb|EES36241.1| transcription antitermination protein NusB [Staphylococcus epidermidis W23144] gi|319400860|gb|EFV89079.1| transcription antitermination factor NusB [Staphylococcus epidermidis FRI909] Length = 129 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +AR+ + L + K LT +E+ L D + +V Sbjct: 2 SRKDARIQAFQTLFQLEIKETDLTIQEAIEFIKDDHSDL---DFDFIYWLVTGVKDHQIV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L S+ R S + +LR++ +IL+ D VV+ AVE K+ ++ H+ Sbjct: 59 LDDTIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRRVSR 133 VN +L ++ Sbjct: 119 -FVNGVLSNIND 129 >gi|195470425|ref|XP_002087507.1| GE17352 [Drosophila yakuba] gi|194173608|gb|EDW87219.1| GE17352 [Drosophila yakuba] Length = 504 Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 12/172 (6%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++++P VLD CA+PGGK + + D+ + RL KL Sbjct: 274 FMMDGASTLPPLFLQVQPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRK 333 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 +R + DA + + FD +LVD PC++ + ++ Sbjct: 334 VMQEYLFDYKERWAGKRLIFSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 393 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ Sbjct: 394 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 445 >gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus 10329] Length = 151 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 15/148 (10%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQI 47 MK NAR + + + ++ + + + R D Sbjct: 1 MKPAARRNARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDVA 60 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106 R +++ + +D+ + + + LLR+++ ++ DV V++ Sbjct: 61 YFRELLSGVVLSHAELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 120 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSRE 134 A+E AK K VN +L + + Sbjct: 121 AIELAK-VFAAEDSHKFVNGVLDKAAPH 147 >gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 6/136 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + LD + +S L + + +R ++ + Sbjct: 1 MSRRV-ARRGLMKLLYQMDINEDYSDEALDFYFENS---DLKEDEVEFIREHISGMIDKF 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L SL R +Q+LR++V ++ + A V++ AVE A+ N Sbjct: 57 EEIDEIIKSNLEGWSLERISNIDRQILRIAVYELYFTSTASNIVINEAVEIAREYSSNE- 115 Query: 120 FAKLVNSILRRVSREK 135 K +N IL + R+ Sbjct: 116 APKFINGILGTIFRKF 131 >gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori Gambia94/24] Length = 138 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori P12] gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12] Length = 138 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori HPKX_438_AG0C1] gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori Lithuania75] Length = 138 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori HPAG1] gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27] gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128] gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8] gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori PeCan4] gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1] gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27] gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128] gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8] gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori PeCan4] gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori F32] Length = 138 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLERI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591] gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591] Length = 139 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R ++ ++DA + Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGVDIAYFRELLAGVATQAEKLDAQMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR++V ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L + Sbjct: 127 LDKAGPH 133 >gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2] gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2] Length = 143 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 4/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ L + S LL L + + + + +V + Sbjct: 1 MGDRRQARELALQALYYFDVDKGSPDELLALFCSNFE-DRIDESIRPFFLDLVKGVTQAR 59 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +D +++ + + R + ++R+++ ++L D+ ++ AVE KR R Sbjct: 60 AEVDDLMNRSSSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGKRF-GTR 118 Query: 119 HFAKLVNSILRR 130 +N +L + Sbjct: 119 GSGAFINGVLDK 130 >gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum A3 str. Loch Maree] gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str. Loch Maree] Length = 141 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 12/140 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLE---------YGDSAFRLLSQRDQILVRAIV 53 + +R V+ LL +L L+ D L D V+ I+ Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRII 61 Query: 54 NVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 + ID + L + + R +LR+ ++ + D+ V+ A+E A Sbjct: 62 KGIEKNKEEIDGKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIELA 121 Query: 112 KRDKENRHFAKLVNSILRRV 131 K+ + A +N +L ++ Sbjct: 122 KKYSGEKS-ATFINGVLGKM 140 >gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus metallidurans CH34] gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein B-like protein(Protein nusB) [Cupriavidus metallidurans CH34] Length = 171 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ L + R + ++ + ++ D+ A++ +R Sbjct: 32 SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADREHFDALLGGAVREEA 88 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 R+ A + L ++ + L V ++++ LD+ V++ AVE K + Sbjct: 89 RLTAAFEPFLDRTVDELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGY 148 Query: 121 A 121 Sbjct: 149 K 149 >gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200] gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200] Length = 140 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 5/118 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR +L R+ ++ + + Y ++ + + V + L Sbjct: 2 NRTEAREWIVKMLYQYDVSRLPISKIFENFYKEND----PGEQKEYIENTVIGAIEHLEE 57 Query: 63 IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ + L R +LR S+ ++ Y ++ ++ AVE AK+ Sbjct: 58 IDKEIERYSQNWALNRMPKIDLAILRCSIYEMQYGNIPVNISINEAVEIAKKYSTEDS 115 >gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille] gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille] Length = 156 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + +++ + + D A++ T++ + Sbjct: 15 TPRHRAREFALQGLYQWLLNNEDV-RVIETHIRQA--HGFDKADAEHFDALLYGTVKQVG 71 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 + A L ++ + L + ++ ++++ V++ AVE K Sbjct: 72 ELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVELTKSFGGIDG- 130 Query: 121 AKLVNSILRRV 131 K VN +L + Sbjct: 131 HKYVNGVLDKF 141 >gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256] gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256] Length = 149 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 9/136 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 +S ARL + L + + L+ + ++ D IV Sbjct: 6 QSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIEDAEYADADVPFFDDIVKGV 65 Query: 57 LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 L IDA + L S + R +++ +LR +++ DV AVV V+ AK Sbjct: 66 LARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEYVDVAKA 125 Query: 114 DKENRHFAKLVNSILR 129 + R A N +L Sbjct: 126 FFDGRE-AGFANGLLD 140 >gi|297735000|emb|CBI17362.3| unnamed protein product [Vitis vinifera] Length = 369 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 21/165 (12%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT---------RDTDDI 337 L ++ ++ K +D VLVDA C+ G+IR D + Sbjct: 216 GLSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERT 275 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +LL G +K GG +V+S CSL +E+VV++ LR + + Sbjct: 276 DSLTVLQFRLLSNGFRLLKVGGSLVYSTCSLTAAQNEDVVEQFLRENASAELQEIDAATN 335 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 W + + +R P ++S G F +L Sbjct: 336 WPCKSGGIPKT----LRFDP--------LTSQTSGLFVAKFTKLA 368 >gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC 14579] gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134] gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264] gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842] gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222] gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200] gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis BMB171] gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579] gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134] gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264] gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842] gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar sotto str. T04001] gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200] gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222] gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis BMB171] gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 130 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + ++ + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVEN 53 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + L L R + +LRV+V ++ Y+ ++ ++ A+E AK + Sbjct: 54 KEAIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112 Query: 118 RHFAKLVNSILRR 130 + +N +L Sbjct: 113 EESRRFINGVLSN 125 >gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus denitrificans BC] gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus denitrificans BC] Length = 181 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + ++ + D A+++ + +DA+ Sbjct: 41 AREFALQALYQHLVGG---NDATAIDLFTRDLSGFHKADAAHYDALLHGCIETEQHMDAL 97 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + +L + ++ + V + + DV V++ +E AK Sbjct: 98 IAPLLDRKMAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAKEFGGTDGHK 153 >gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales bacterium 1_1_47] gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales bacterium 1_1_47] Length = 188 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 4/130 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + F + DQ R +++ P ++ Sbjct: 55 EFALQGVYQWLMSHTDPEAIDAAALEAEDF---DKADQAFYRELLHGVTEEFPSLETSYA 111 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + + + +L + ++ V++ AVE AK + F VN +L Sbjct: 112 PHIDREVTSLSPIERAILLIGTYELKNTTTPYRVVINEAVELAKSFGGSDGFK-YVNGVL 170 Query: 129 RRVSREKIEL 138 ++ E Sbjct: 171 DKMVPELRPY 180 >gi|19920494|ref|NP_608573.1| CG4749 [Drosophila melanogaster] gi|7296118|gb|AAF51412.1| CG4749 [Drosophila melanogaster] gi|16185422|gb|AAL13914.1| LD40271p [Drosophila melanogaster] gi|220946264|gb|ACL85675.1| CG4749-PA [synthetic construct] gi|220955880|gb|ACL90483.1| CG4749-PA [synthetic construct] Length = 503 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 101/304 (33%), Gaps = 23/304 (7%) Query: 92 QILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEW 151 ++ + +V + V + + + V R+ + + Sbjct: 152 ELKFDNVEEDQP--EQVNNPFKQSLTKALEEDVKLDEHRLVDPQFGTGGLYEYMPAHSIK 209 Query: 152 FKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES 211 E + + A E + + + K+ Sbjct: 210 GMEDWVAESEHYK-YYQTSADFPLAIEPEPSFHYPEHLSLYTYEMGNCSDFKGPKKCMTG 268 Query: 212 IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTAL 269 ++S ++ D ++++P VLD CA+PGGK + + Sbjct: 269 VLSH--------FMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCN 320 Query: 270 DVSKRRLEKL--------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG- 320 D+ + RL KL +R + + DA + + FD +LVD PC++ Sbjct: 321 DIQESRLNKLRKVMQEYLFDYKERWAGKRLILSQSDARNLDQYEQFDKILVDVPCTTDRH 380 Query: 321 -TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQK 379 + ++ + ++ Q +L + ++PGG +V+S CSL ++ VV Sbjct: 381 VLNEQDNNIFKPTRIKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHM 440 Query: 380 VLRS 383 L+ Sbjct: 441 ALQK 444 >gi|126460604|ref|YP_001056882.1| Fmu (Sun) domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250325|gb|ABO09416.1| Fmu (Sun) domain protein [Pyrobaculum calidifontis JCM 11548] Length = 415 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 84/444 (18%), Positives = 145/444 (32%), Gaps = 57/444 (12%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQIL-----VRAIVNVTLRFLPRIDA 65 + +L V++ ++L AF+ + +R + L +R + Sbjct: 13 VAKVLYEVVQNELTLD---------YAFQKVKRRWRALESFKVFYDASFDAVRHYYFLRF 63 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + SS + L R +LY V + ++ R AK + Sbjct: 64 AASKLFGSSGAKAAAKAWFLYR--ADSLLYNK--------ELVARYRKRLLKRALAKPED 113 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF- 184 S P + L E + + +++ + Sbjct: 114 VEKALEELRGDPARYLSVKYSYHPAIVETLLRYLPLGEVERLLEAGNTTWMWLRINTFKV 173 Query: 185 ------DIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFG 238 + ++ + +K+ + I L QD ++ V Sbjct: 174 DVDKGLKLLEQEAEVEPHPHIPFMVLVKKASKPIQYLSAVKTFAAIPQDLASVYTVLALD 233 Query: 239 TLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 SVLDL AAPG K Q+ KV A DVS++R+ ++R L L Y + Sbjct: 234 PRPGDSVLDLAAAPGMKISLATQIAEGKLKVVAADVSRKRVARMRHLLKALGAYQYVDVV 293 Query: 296 MDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + FD L+DAPC+S+G + P V + + + Q +LL + + Sbjct: 294 HADSRKLAARRFDKALLDAPCTSSGAFTKDPGVKIYPRVERARQYSQLQLQLLTRALQLA 353 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 + VV++ CS+ ++ EEVV K L L +YW I R Sbjct: 354 E---EVVYAVCSILPEEGEEVVSKAGAR--AEKPLAELAPSYWGDIGG----------RT 398 Query: 416 TPDMLEKIDGVSSGMDGFFAVALR 439 P + FF LR Sbjct: 399 FPHIHRSEA--------FFISRLR 414 >gi|326429969|gb|EGD75539.1| hypothetical protein PTSG_06609 [Salpingoeca sp. ATCC 50818] Length = 448 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 18/152 (11%) Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRR---------HPDVLWTRDTDDIVKSACFQRKLL 348 + +L+D V+VDA C+ G+I+ D I QR+LL Sbjct: 293 CTCHTHSRLYDKVMVDAECTHDGSIKHIIKYNEWGWDTFERRFFDPHRIETLEALQRQLL 352 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 G S ++PGG +V+S CS K+ +E ++ L ++P L+P + Sbjct: 353 TTGFSLLRPGGRLVYSTCSFAKRQNESIISWFLDATPT-ARLLPADLPSSTPHTHPREQR 411 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + I+ P SG G F + + Sbjct: 412 LKHCIKFNP--------KVSGTSGLFVAVITK 435 >gi|308806802|ref|XP_003080712.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri] gi|116059173|emb|CAL54880.1| NOL1/NOP2/sun family protein (ISS) [Ostreococcus tauri] Length = 682 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 96/311 (30%), Gaps = 88/311 (28%) Query: 219 AEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTALD 270 EG+ Q+ + +PV + VLD+CA+PG KT Q + V A D Sbjct: 127 KEGLGARQEIVSMLPVMALDPPSGARVLDVCASPGQKTMQLLERVRYGASGTRGVVHAND 186 Query: 271 VSKRRLE--------KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD-------------- 308 R++ R +R L+A D + D Sbjct: 187 AHPGRVKTLLQAIDRHCRIAREREGLFASRAFGQDLHFPLFAESGDLKRERRRITALSDG 246 Query: 309 --------------AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISF 354 VL D PCS GTIR+ D L Q + + Sbjct: 247 CERMDALLELGGYTHVLADVPCSGDGTIRKDADCLVRWHPGIGNMLHQTQLAIARRCARL 306 Query: 355 VKPGGIVVFSNCSLDKQDSEEVVQKVL----------RSSPIPVELVPLNSAYWKSIDMA 404 +KPGG++V+S C+ + + E VV +L +PVE P A+ + Sbjct: 307 LKPGGVMVYSTCTFNPVEDEAVVASLLLDDELSLELQELDGLPVEGRPGLYAWRVGEHVN 366 Query: 405 MALSPEGWIRI---------------------TP-----------DMLEKIDGVSS--GM 430 + +G + I P + E+ Sbjct: 367 ASGDDDGDVSIKWFETFDEANVNGSGDFMTTMWPPGPKFARELRLERCERFFPQDGAKNT 426 Query: 431 DGFFAVALRRL 441 GFF +R+ Sbjct: 427 GGFFVAKIRKK 437 >gi|195575701|ref|XP_002077715.1| GD23073 [Drosophila simulans] gi|194189724|gb|EDX03300.1| GD23073 [Drosophila simulans] Length = 361 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 12/172 (6%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++++P VLD CA+PGGK + + D+ + RL KL Sbjct: 131 FMMDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRK 190 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 +R DA + + FD +LVD PC++ + ++ Sbjct: 191 VMQEYLFDYKERWAGKRLIFSHSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKP 250 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ Sbjct: 251 TRVKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 302 >gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus salivarius UCC118] gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus salivarius ATCC 11741] gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118] gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus salivarius ATCC 11741] Length = 131 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 7/133 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S + R ++ L + + + Y + + D + +V+ L Sbjct: 1 MSLSRHDIRKIAFQTLFAL---GSNPDANSEDIYQELLDEDNNDSDLSYLNELVDGVLDH 57 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 ID + L + + R + +LR+++ +I Y DVA V+ AVE AK ++ Sbjct: 58 QSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYSDVASKIAVNEAVELAKEFSDD 117 Query: 118 RHFAKLVNSILRR 130 + + VN+IL+ Sbjct: 118 KSYK-FVNAILQN 129 >gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC 10987] gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987] Length = 130 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 9/132 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + L+ + + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGE-----LEPKIAVENTLDEGEETNEFLESLVVGFVENK 54 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L L R + +LRV+V ++ Y+ ++ ++ A+E AK + Sbjct: 55 EVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDE 113 Query: 119 HFAKLVNSILRR 130 + +N +L Sbjct: 114 ESRRFINGVLSN 125 >gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130] gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130] Length = 186 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 1 MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAI 52 MK ARL + L + LT ++ + D R I Sbjct: 8 MKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLGHEIDGETYLDADPSWFRGI 67 Query: 53 VNVTLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109 V +R +ID V+ L L R +L+ +LR +V +++ DV+ VV +E Sbjct: 68 VGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVSARVVVSEYIE 127 Query: 110 QAKRDKENRHFAKLVNSILRR 130 K K+VN +L + Sbjct: 128 VTKAFF-ESDEPKMVNGVLDK 147 >gi|207341631|gb|EDZ69632.1| YNL022Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 490 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 103/351 (29%), Gaps = 75/351 (21%) Query: 150 EWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELP 209 W + + + + + + W+ + + I Sbjct: 154 RWIRINPLKCHPNGETEPVLAELRKKFTLKV------DKWSELVPGSIYYDEFIPNLFGI 207 Query: 210 ES---IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL------- 259 I + + G +QD ++ P + + V+D C+APG KT Sbjct: 208 HPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPE 267 Query: 260 --IVSGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFD---AVLVD 313 + ++ A + R + L+ + + D + + +VD Sbjct: 268 PPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEKYKDVTCFIVD 327 Query: 314 APCSSTGTIRRHPDVLWTRD-------------------------TDDIVKSACFQRKLL 348 CS +G R + R + K + FQ +++ Sbjct: 328 PSCSGSGIFGRKFFDSFNRRKIDDKDDDGGIVPDEQEEFIAKEELQTRLAKLSSFQFQMV 387 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR-------------------SSPIPVE 389 +SF +V+S CS+ +++E VV +L S P + Sbjct: 388 KHAMSFPAAK-KIVYSTCSIHAEENERVVIDLLLDKSVREWGWKVAPKRKVIPSWPRRGK 446 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + + EG IR P S G GFFAV R Sbjct: 447 VEEFEEVFRDGVTYDPQQLAEGCIRALP--------KSDGGIGFFAVCFER 489 >gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii DFL-11] gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii DFL-11] Length = 177 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 9/135 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + LT ++ + + D+ + I+ + Sbjct: 28 ARLAAVQALYQMDIGGAPLTNVVSEYTAFRLGKEIDGEQYRDADEQWFKHILAGVVADQK 87 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +D + L L R L+ +LR ++L DV ++ ++ AK E+ Sbjct: 88 FLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPAKVIISEYIDVAKAFFEDD 147 Query: 119 HFAKLVNSILRRVSR 133 LVN +L R++ Sbjct: 148 E-PGLVNGVLDRLAH 161 >gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21] gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21] Length = 145 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 7/128 (5%) Query: 1 MKSGMNARLVSSHLLSC---VMRKRISLTCLLDLEYGDSAFRLLS--QRDQILVRAIVNV 55 M + R ++ L V++ S + + + LS + +VN Sbjct: 1 MTTRREGRELALQALYSKDLVLQDANSTLKRITESFSEGEEPTLSVNSKAYAFASELVNG 60 Query: 56 TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 + L +ID+ + S+ R +LR++V ++LY D+ ++ A+E AK+ Sbjct: 61 VVSNLQQIDSRIAEKSKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVAKK 120 Query: 114 DKENRHFA 121 + + Sbjct: 121 FGADDSAS 128 >gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233] Length = 144 Score = 83.4 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 15/139 (10%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIV 53 M + +R + +L + + +L + + D+ +V Sbjct: 1 MSARSKSRKRALDVLFAAEARGVDPLVVLSERMEEP-----TGPDRHSWTPIGDYAEGLV 55 Query: 54 NVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 + R+D +L ++ R + +LR++V ++LY +V VV+ AV+ A Sbjct: 56 RGFVEHQDRVDTLLAEHSRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVDSA 115 Query: 112 KRDKENRHFAKLVNSILRR 130 K + VN +L + Sbjct: 116 K-ILSTDDSPRFVNGVLGQ 133 >gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10] gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar Microtus str. 91001] gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis IP 32953] gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis Antiqua] gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis Nepal516] gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis Pestoides F] gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125] gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis IP 31758] gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola] gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. F1991016] gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. IP275] gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. B42003004] gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis YPIII] gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia pseudotuberculosis PB1/+] gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92] gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A] gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516] gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27] gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis Z176003] gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10] gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus str. 91001] gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP 32953] gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516] gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua] gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92] gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F] gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125] gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia pseudotuberculosis IP 31758] gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola] gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. IP275] gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII] gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+] gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516] gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A] gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis D106004] gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis D182038] gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27] gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis Z176003] gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 138 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994] gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994] Length = 132 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR+ LL ++ D + R + + + L Sbjct: 1 MATRHQARMAVVSLLYAYDLGNQTIADFSDEILEEKKIRN---KQRDFALDLFKGVTEHL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID + L R + LR+ +I++ ++ +++ A+E AK + Sbjct: 58 SEIDEAIVKHLKDWDFDRLGSIERATLRLGGYEIMFGELDSAVIINEAIEVAKAF-GSEQ 116 Query: 120 FAKLVNSILR 129 K +N +L Sbjct: 117 SPKFINGVLD 126 >gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp. Ellin185] gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp. Ellin185] Length = 138 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 7/114 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR + LL ++ I+ LLD L + +V + Sbjct: 1 MGARTKARKRALDLLFEAEQREINAKDLLDERVLAPVTPAPLPE----YTAVLVRGVVDH 56 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 I+ L+ +L R + LLRV+ ++LY DV D V A A Sbjct: 57 WRTINEALETYARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVAVSEAKNLA 110 >gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18] gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18] Length = 145 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 7/128 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNV 55 M + R ++ L L + + + + +VN Sbjct: 1 MTTRREGRELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKAYAFASELVNG 60 Query: 56 TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 + L ID + S+ R +LR++V ++LY D+ ++ A+E AK+ Sbjct: 61 VVTHLQEIDGRIAEKSKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVAKK 120 Query: 114 DKENRHFA 121 + + Sbjct: 121 FGADDSAS 128 >gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2] gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2] Length = 157 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + ++ + +++ D + RA+V Sbjct: 13 MKS--AARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDEMAEGDVVHFRALVGH 70 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + +ID + D L + R L+ L R + A++L + V+ V+ AK Sbjct: 71 AVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMPTPPKVVITEFVDVAKA 130 Query: 114 DKENRHFAKLVNSILRRV 131 A VN++L + Sbjct: 131 FFPEGKEASFVNAVLDHM 148 >gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1] gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1] Length = 141 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR ++ L + L D +S+ Q R +V T L Sbjct: 2 SRRKAREIALQTLFQLDFNDTDPVAALAALVQDR--DDVSKNAQEYARQLVTGTKDHLAE 59 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRH 119 IDA++ L R + ++R+++ ++ Y + V++ AVE AK Sbjct: 60 IDAIIAGQAKEWKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEAVELAKIFSTEES 119 >gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6] gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6] Length = 136 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ S +L + ++++ IV + Sbjct: 1 MSARGKARSRALDVLFEAEQRSASAFDVL-RARREKTDQIVNP----YTLEIVEGVVSRQ 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID L+ SL R + +LR+ ++LY DV D V AV AK Sbjct: 56 QAIDEFLETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKT-LSTD 114 Query: 119 HFAKLVNSILRRVSR 133 + +N +L R+ + Sbjct: 115 ESPQFINGLLGRLQQ 129 >gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601] gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601] Length = 181 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + ++ + D A+++ + +DA+ Sbjct: 41 AREFALQALYQHLVGG---NDATAIDLFTRDLSGFHKADAAHYDALLHGCIETAQHMDAL 97 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + +L + ++ + V + + DV V++ +E AK Sbjct: 98 IAPLLDRKMAEISPIEHAVMWIGVYEFQHCPDVPWRVVINECIELAKEFGGTDGHK 153 >gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM 19370] gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM 19370] Length = 148 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 K+ ARL + L + ++ LT LLD + R + D +V Sbjct: 7 KARSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIEDVEYLDADVAFFDDVVKGV 66 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 + IDA L L SL R ++ Q+LR ++L D+ V+D ++ A Sbjct: 67 VARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLDVAHA 126 Query: 114 DKENRHFA 121 + R Sbjct: 127 FFDAREAK 134 >gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae pv. syringae FF5] Length = 127 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR +++ L SL + D+ F + D +++ Sbjct: 25 AKRREARQMATQALYQWHMAGHSLNEIEAQFRVDNDFSNV---DGTYFHELLHGVATNKT 81 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDL 106 ID L L ++ +LR+S ++L +DV V++ Sbjct: 82 EIDTALSPCLDLTIEELDPVELAVLRLSTFELLKRIDVPYRVVINE 127 >gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2] gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2] Length = 157 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR ++ + T + G+ + L + D+ + ++ L Sbjct: 17 SPRHRARELALQGVYQWRVSGSDATEIEAHLQGE---KNLGRYDKPMYSKLLRGVLANQE 73 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 + +L L +L +L ++ ++ + LDV V++ AVE AK Sbjct: 74 ELQILLTPYLDRALDELSTVEFSVLLLAGFELAHQLDVPYKVVINEAVELAKTFGGTDG- 132 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 133 HKYVNGVLDK 142 >gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str. Ames] gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str. 'Ames Ancestor'] gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241] gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str. Sterne] gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L] gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str. A2012] gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis str. Al Hakam] gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488] gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442] gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193] gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465] gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389] gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174] gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis Tsiankovskii-I] gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W] gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99] gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108] gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97] gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187] gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820] gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1] gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102] gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684] gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271] gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201] gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248] gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str. CNEVA-9066] gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str. A1055] gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str. Western North America USA6153] gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str. Kruger B] gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str. Vollum] gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str. Australia 94] gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI] gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames] gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames Ancestor'] gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241] gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne] gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L] gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al Hakam] gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488] gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193] gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442] gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389] gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465] gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174] gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis Tsiankovskii-I] gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W] gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108] gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99] gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97] gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187] gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820] gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1] gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102] gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684] gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201] gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271] gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248] gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar anthracis str. CI] gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis serovar finitimus YBT-020] Length = 130 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + ++ + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVEN 53 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + L L R + +LRV+V ++ Y+ ++ ++ A+E AK + Sbjct: 54 KEVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112 Query: 118 RHFAKLVNSILRR 130 + +N +L Sbjct: 113 EESRRFINGVLSN 125 >gi|291532856|emb|CBL05969.1| transcription antitermination factor NusB [Megamonas hypermegale ART12/1] Length = 131 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR ++ L + + ++ L + D VR +V+ T L Sbjct: 2 SRRQAREIALQSLFQLDFNECEVDSAIENVLSHKK---LHEADCDFVRILVSGTRENLES 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ + R + ++R+++ ++ + + ++ AVE AK+ Sbjct: 59 IDKMIAEKSKDWKIERMSGIDRNIVRLAIFEMKFSSDKLVPNIAINEAVELAKKF-GTDD 117 Query: 120 FAKLVNSILRRV 131 A+ VN IL + Sbjct: 118 SARFVNGILGSM 129 >gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium extorquens PA1] gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4] gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens AM1] gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens DM4] gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium extorquens PA1] gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4] gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens AM1] gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens DM4] Length = 171 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL L + + L + + + R ++ + Sbjct: 19 ARLAVVQALYEMEISDKGVIEALAEFEAFWIGQEVDGVVHPPAEIAFFRDVLRGAVEEQR 78 Query: 62 RIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID LD L L R + L+ +LR ++++ DV A + VE A Sbjct: 79 AIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRDVPARAAISQYVEVAYSFYGGD 138 Query: 119 HFAKLVNSILRR 130 +VN++L R Sbjct: 139 E-PGMVNAVLDR 149 >gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062] gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062] Length = 163 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + + + L +L+ + + D R +V Sbjct: 21 ARLAAVQAVYQMEITGARLNDVLNEYEAYRLGQEVDGEQYRDADPAWFRDLVQAVFEDQL 80 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENR 118 RID + L L R +L+ +LRV A+ + DV +++ ++ AK E Sbjct: 81 RIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRKKDVPARVIINEYIDVAKSFYEGD 140 Query: 119 HFAKLVNSILRR 130 A+LVN I+ R Sbjct: 141 E-ARLVNGIMNR 151 >gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42] gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42] Length = 130 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + ++ + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVIGFVEN 53 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + L L R + +LRV+V ++ Y+ ++ ++ A+E AK + Sbjct: 54 KEVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GD 112 Query: 118 RHFAKLVNSILRR 130 + +N +L Sbjct: 113 EESRRFINGVLSN 125 >gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus epidermidis VCU121] Length = 128 Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + + L D + +V P Sbjct: 2 SRKESRVQAFQTLFQLEIKDTDLTIKEAINFIKDDYPDL---DFDFINWLVTGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L SL R + + +LR++ +IL+ D V++ AVE AK+ ++ H+ Sbjct: 59 LDEKIKPYLKDWSLERLLKTDRIILRMATFEILHSDTPAKVVINEAVELAKQFSDDDHYK 118 Query: 122 KLVNSILRRVS 132 +N +L ++ Sbjct: 119 -FINGVLSNIN 128 >gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191] gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191] Length = 140 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 6/133 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + L + + EY + L I++ L Sbjct: 1 MGNRRLAREHALQTLYYADTGKTQGKDI--NEYKEDFKDSLDAAGFEFCSGIIDGALEHQ 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKEN 117 +D ++ + SL R + +LR++ ++L+ + AV+D A+E AK+ Sbjct: 59 AELDKIISAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAIELAKKF-ST 117 Query: 118 RHFAKLVNSILRR 130 + ++ +N +L + Sbjct: 118 ENSSRFINGLLDQ 130 >gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 260.94] gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni 81-176] gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni 81116] gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 1336] gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 260.94] gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 81-176] gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp. jejuni 81116] gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 1336] gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter jejuni subsp. jejuni M1] gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 327] Length = 132 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 12/133 (9%) Query: 1 MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + R LL + + + +LD + + + + + L Sbjct: 1 MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN-------FTLNLYHGIL 53 Query: 58 RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 L ID L+ L + + + + +LR+ ++L+ D V++ A+E AK Sbjct: 54 DNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVINEAIELAKE-LA 112 Query: 117 NRHFAKLVNSILR 129 N + K +N +L Sbjct: 113 NDNSPKFINGVLD 125 >gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori F16] Length = 138 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L L Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGTYEIGFTPTQNPIIINECIELGK 110 >gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T] gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T] Length = 166 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR ++ + + + T + + +S L + D+ L +++ Sbjct: 22 MARRR-ARELALQGVYQWLLSGNNATTV--QRHLESETENLDKIDRELFVSLLRGATGAA 78 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 + + +L + +L + ++ + LD V++ A+E AK Sbjct: 79 DELRGCFEPLLSRPVAELSPIEHAILLLGTHELRHNLDTPYRVVINEAIELAKGYGGTDG 138 Query: 120 FAKLVNSILRR 130 K VN +L + Sbjct: 139 -HKFVNGVLDK 148 >gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602] gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602] Length = 137 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + D R ++ ++DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELEFLTEQDVKDVDIAYFRELLAGVANSAEKLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L + Sbjct: 127 LDKAGPH 133 >gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13] Length = 133 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 10/132 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +R + + + I+ + + + +IV T Sbjct: 1 MK-RSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD------DFLSSIVFGTKEHQ 53 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID+ L L SL R + +LR++V ++++ ++ ++ A+E AK + Sbjct: 54 EEIDSTLKSHLEKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELAKTF-GDD 112 Query: 119 HFAKLVNSILRR 130 + +N++L + Sbjct: 113 KSSGFINAVLSK 124 >gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D str. 1873] gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D str. 1873] Length = 135 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 4/135 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R ++ LL + + L ++ + ++ L D + I+ + Sbjct: 2 NRRKSREIAMKLLFEMSINKEELKEII-HNFKENTDTSLKDVDFEYINKIIQGVQDNIET 60 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID+ ++ L L R +LR+S +I++ D+ + V+ +E AK+ + Sbjct: 61 IDSKIEENLTKWKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIELAKKYSA-ENS 119 Query: 121 AKLVNSILRRVSREK 135 +N +L + + + Sbjct: 120 PAFINGVLGNMMKIQ 134 >gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4] gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4] Length = 173 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 9/135 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + L+ ++ + L D+ ++IVN Sbjct: 24 ARLAAVQALYQMDVGEVPLSSVISEFTAFRLGKELDGEQYLDADEQWFKSIVNGVFEDQK 83 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +D + L L R L+ +LR ++L DV ++ ++ K Sbjct: 84 FLDPFIHKALTEGWPLKRVDSLLRAILRSGSFELLRRKDVPPKVIISEYIDVTKAFY-EA 142 Query: 119 HFAKLVNSILRRVSR 133 LVN +L R++ Sbjct: 143 DEPGLVNGVLDRLAH 157 >gi|145488288|ref|XP_001430148.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124397244|emb|CAK62750.1| unnamed protein product [Paramecium tetraurelia] Length = 351 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 74/352 (21%) Query: 153 KERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI---RLKELP 209 G + + + + + + I + E +++ +LP I Sbjct: 11 FREFLQEEGIDEEIFLFEQTLRYIRIKPDYQITFEQLQQQVSNQILPIYEIPTLYSLPAD 70 Query: 210 ESIVSLPGFAEGVWWVQDASASIPVQL-FGTLNNLSVLDLCAAPGGKTAQ---------- 258 E I +L + +G + D S++ V N+ ++L++C APG K Sbjct: 71 EKISNLQLYKDGNLYGIDKSSAAVVYSLDINKNDTNLLEICCAPGAKLTFIADLLRLQTK 130 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYCPKKLFDAVLVDAPCS 317 KV +D+S+ RL + +++ L ++I D Y + LFD VL+DA C+ Sbjct: 131 EDGIQRKVFGVDISQNRLNITQSIVNKYKLEKFVELILEDGTKYKSEILFDKVLIDAECT 190 Query: 318 S--------------------------------------TGTIRRHPDVLWTRDTDDI-- 337 T T +D Sbjct: 191 HEGSIKHLKKYINKPIQEKNTKKQQKNNKASKKQLQKNYTNTYTTEQTKANEWTEEDFNS 250 Query: 338 --------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE 389 + Q LL G +K G++++S CS ++ +E+ + K L + + Sbjct: 251 RFLDQKKLQQIYDLQFSLLENGYRLLKQNGMLIYSTCSFSQKQNEDQIIKFLELNNDAIL 310 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + P S + + + D S G F +++L Sbjct: 311 VNPFYSMNQQQCKSGKIFN-----------TIRFDPKVSNTGGMFIAKIKKL 351 >gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32] gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32] Length = 145 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 7/128 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQIL--VRAIVNV 55 M S R ++ L + + + D + L + +VN Sbjct: 1 MSSRREGRELALQALYSSDAESLGGTFALKKIMDNFADGSEPSLDVHGRSFTFATELVNG 60 Query: 56 TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 L ID ++ + S+ R +LR++V ++ Y D+ ++ A+E AK+ Sbjct: 61 VLSNSEAIDRKIEEKSKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEAIEVAKK 120 Query: 114 DKENRHFA 121 A Sbjct: 121 FGAEDSPA 128 >gi|71023973|ref|XP_762216.1| hypothetical protein UM06069.1 [Ustilago maydis 521] gi|46101659|gb|EAK86892.1| hypothetical protein UM06069.1 [Ustilago maydis 521] Length = 590 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 105/355 (29%), Gaps = 61/355 (17%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPT 200 + IP W + + + +SD + + + I+ +A + L Sbjct: 163 YEQMTARIPRWIRINPLRATRDQVLQWLSDNRYTQVDVRDDEIGGIKQFAESTHVAGLLA 222 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI 260 + +++ + E +QD ++ P + SV+D +APG KT+ L Sbjct: 223 ---FHPKATSALLKSEMYRENWIVMQDLASCFPAYILDPPAGSSVIDATSAPGNKTSHLS 279 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRL---------------------HLYAEDIIEMDAF 299 + R++ + R D Sbjct: 280 AIMHSKSGSTRENGRIDAFERDAARYKTLVKRLDAVGALALPRPQPTQHGNVTAHRRDFL 339 Query: 300 DYCPKKLFD--AVLVDAPCSSTGTIRRHPDVL-------------------WTRDTDDIV 338 P + +L+D CS +G + R + T+ + Sbjct: 340 TTNPDDFPNVTHMLLDPSCSGSGIVNRLDFLKEDDDVEHDPLDADALDSDTTTKLARRLR 399 Query: 339 KSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + + FQ+ ++ F ++ VV+S CS+ Q++E VV L++ L Sbjct: 400 QLSEFQQLMIRHAFKFPALRK---VVYSTCSVHAQENELVVINALQTHEAQSRGWKLAPR 456 Query: 397 YWKSIDMAMALSPEGW----------IRITP-DMLEKIDGVSSGMDGFFAVALRR 440 + + IR P E +GFF R Sbjct: 457 KHVIPTWPVRGDTDACTGKHHVAESVIRCIPGGKGEGDKPNVESCNGFFVACFIR 511 >gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni RM1221] gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 84-25] gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni RM1221] gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 84-25] gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8486] gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp. jejuni CG8421] gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. jejuni IA3902] gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp. jejuni S3] gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 132 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 12/133 (9%) Query: 1 MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + R LL + + + +LD + + + + N L Sbjct: 1 MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN-------FTLNLYNGIL 53 Query: 58 RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 L ID L+ L + + + + +LR+ ++L+ D V++ A+E AK Sbjct: 54 DNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVINEAIELAKE-LA 112 Query: 117 NRHFAKLVNSILR 129 N + K +N +L Sbjct: 113 NDNSPKFINGVLD 125 >gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 166 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + L V+ + L + + + D + +V+ T R L Sbjct: 2 TRHEARECALQALC-VLDVQRDLGSAEAIASALAERGTDAGGDFTYIEELVDGTRRHLDE 60 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ID +L + S R + +LR++ ++L+ ++ + +D AVE AK + Sbjct: 61 IDELLARHMERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIAKTFATEQS 119 >gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132] gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132] Length = 149 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%) Query: 8 RLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ +L + K L + S+ + R +V L ID Sbjct: 17 RTLAFQVLYSTHFLDKENPLDMDTLFDLNPMVVEQESETARAFARDLVRGVSVNLHDIDR 76 Query: 66 VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ++ + R +LR+S+ ++L+ D+ A ++ A+E +K +++ + Sbjct: 77 TIEEHSQHWKIERIAMVELSILRLSLYEMLFTDIPVKAAINEAIELSKTFGDDKSRS 133 >gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1] gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1] Length = 186 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R + L + R ++ + D A+++ + Sbjct: 37 SARSRSRAFALQALYQHIVGR---NEATAIDVFTRDLSGFHKADAAHYDALLHGCIENAG 93 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +DA++ L +L + + V + LDV V++ VE AK Sbjct: 94 ALDALIAPKLDRTLEEISPIEHATMWIGVYEFQNCLDVPWRVVINECVELAKEFGGTDGH 153 Query: 121 A 121 Sbjct: 154 K 154 >gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri L37603] gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri L37603] Length = 128 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + + L D + +V P Sbjct: 2 SRKESRVQAFQTLFQLEIKDTDLTIKEAINFIKDDYPDL---DFDFINWLVTGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L SL R + + +LR++ +IL+ D V++ AVE AK+ ++ H+ Sbjct: 59 LDEKIKPYLKDWSLERLLKTDRIILRMATFEILHSDTPSKVVINEAVELAKQFSDDDHYK 118 Query: 122 KLVNSILRRVS 132 +N +L ++ Sbjct: 119 -FINGVLSNIN 128 >gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 139 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + AR + L + + D+EY A + + D + R +++ Sbjct: 1 MKLAARHRARECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVAT 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L L + +LR+++ ++ DV ++ A+E AK Sbjct: 58 NSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GA 116 Query: 118 RHFAKLVNSILRR 130 K VN +L + Sbjct: 117 EDSHKFVNGVLDK 129 >gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus OF4] gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus OF4] Length = 135 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + ARL ++ L + + ++ D+ + +V T Sbjct: 1 MNRRL-ARLRAAQALYQMDLTGSEMESAIESVLEDNEKQS------EFFTQLVQGTTELK 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +ID + L ++ R + + ++R+++ ++L D+ + A+E AK Sbjct: 54 TKIDETISANLEGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELAKAFGGEE 113 Query: 119 HFAKLVNSILRR 130 + VN +L + Sbjct: 114 -AGRFVNGVLSK 124 >gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109] gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109] Length = 142 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + + L + +R+ +V +DA Sbjct: 9 ARERALQCLYQIEITGREVEGAAALFWEHFHS---EERNSAYFHRLVAGVRGHCEELDAY 65 Query: 67 LDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L R + +LR+++ ++L+ +V VV+ AVE KR + + Sbjct: 66 ISRFSQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEAVELGKRF-GAENSGAFI 124 Query: 125 NSILRRV 131 N IL Sbjct: 125 NGILDSF 131 >gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS] gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS] Length = 178 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + R T +D D + D A+++ ++ Sbjct: 32 SNRSRAREFALQALYQHLVGRNDPTD-IDHFTRD--LAGFHKADAAHYDALLHGSIDNAE 88 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ++DA++ +L ++ + V + DV V++ +E AK Sbjct: 89 QLDALIRPLLDRKFEEISPIEHAVMWIGVYEFQNCPDVPWRVVLNECIELAKEFGGTDGH 148 Query: 121 A 121 Sbjct: 149 K 149 >gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4] gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4] Length = 169 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 15/136 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56 + AR + L + LD + LS +D +V Sbjct: 10 ARHKARKRAVDFLFEAEARD------LDPVDLATERAELSGKDDSVAPVAPYTVTVVTGV 63 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 L R+D V+ L +L R + +LR++V ++ + DV VD AVE AK+ Sbjct: 64 AENLDRLDEVISSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122 Query: 115 KENRHFAKLVNSILRR 130 VN IL + Sbjct: 123 LSTDESPGFVNGILGQ 138 >gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603] gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223] gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603] gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223] Length = 152 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 15/148 (10%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQI 47 MK NAR + + + ++ + + + R D Sbjct: 1 MKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVS 60 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106 R ++ + +D+ L + + LLR+++ ++ DV V++ Sbjct: 61 YFRDLLAGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINE 120 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSRE 134 A+E AK K VN +L + + Sbjct: 121 AIELAK-VFAAEDSHKFVNGVLDKAAPH 147 >gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 174 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 11/127 (8%) Query: 2 KSGMNARLVSSHLLSC--VMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNV 55 AR + + VMR+ S L + + L + I + Sbjct: 31 TPRRRAREYALQGVYQSLVMRRAGS----LPNAAAIAKQLGEDPAFRRCQLDLFQGIFDG 86 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRD 114 L ++A++ L + L + ++ + L V ++ AVE AK Sbjct: 87 VLERTDELEAIITPALDRPINELSPVEHAALLIGAYELAIDLSVPYKVAINEAVELAKTF 146 Query: 115 KENRHFA 121 Sbjct: 147 GGTDGHK 153 >gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium KLH11] gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae bacterium KLH11] Length = 160 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + + + ++ + D + RA+V+ Sbjct: 16 MKS--AARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEGEEMLDGDISVFRALVDN 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + D L + R +L+ + R + A++ D V+ V+ A+ Sbjct: 74 AVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQSDTPPKVVITEFVDVARA 133 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 134 FFPEGKEPKFVNAVLDHM 151 >gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110] gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110] Length = 211 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 4/121 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R ++ +L ++ + + + + +D + I+N ++ + Sbjct: 4 SRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKAKD--FIFKIINSVIQNIQD 61 Query: 63 IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID + + L R + L+R+++A++LYL DV ++ A+E AKR ++ Sbjct: 62 IDTHIAKHADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAIEIAKRYSTDKSS 121 Query: 121 A 121 Sbjct: 122 K 122 >gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC 903] gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC 903] Length = 143 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S + R + L + + D + D + +V + Sbjct: 9 SRRDLRERAFQALMALEYDGDIVEACRFAYLHDKDLAEDKEVDLPAFLMNLVTGVYQSKD 68 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + L ++ R + +LR+ + ++ D V+ AVE AK + Sbjct: 69 QLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEFDTPQIVAVNEAVELAKAF-SDET 127 Query: 120 FAKLVNSILRRV 131 ++ VN +L + Sbjct: 128 SSRFVNGVLSQF 139 >gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida DSM 20544] gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida DSM 20544] Length = 143 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 10/140 (7%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLT-----CLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 S AR V+ L + S L ++ +S D+ V +V+ T Sbjct: 2 SRRQAREVALQALFQLDLNPAESADQEEMQETLAIDTALGEAEAMSAHDRAFVAQLVHGT 61 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKR 113 L IDA + + R + L R++ ++ + + ++ AVE AK+ Sbjct: 62 RANLEAIDAQIAANSREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVELAKK 121 Query: 114 DKENRHFAKLVNSILRRVSR 133 ++ VN IL + + Sbjct: 122 Y-GTDDSSRYVNGILGAIMK 140 >gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM 10152] gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM 10152] Length = 169 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 2/121 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + LL + + LL + R +V L R Sbjct: 17 ARHKARRRAVDLLFEAEARDVDAADLLTERADLATRDQSVAPLHAYTRTLVEGVADELER 76 Query: 63 IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ L +L R + +LRV+V ++ + DV VD AVE AK + Sbjct: 77 VDGTIESYLQDWTLSRLPAVDRAILRVAVWELFHATDVPPVVAVDEAVELAKELSTDDSP 136 Query: 121 A 121 + Sbjct: 137 S 137 >gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909] gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909] Length = 138 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDISYFRELLSGVAVNATSLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQLEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis Nb-231] gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis Nb-231] Length = 157 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 5/125 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + + ++ D ++ L +DA+++ Sbjct: 21 VLQALYQWQLTAQDSAEIERQFLEEH---NMAHVDLEYFAELLYEIPARLASLDALIEPA 77 Query: 71 LISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L + +LR+ ++ LD+ VV+ AV+ A R + +N +L Sbjct: 78 LDRPLAVIDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLA-RLFGAEQSHRYINGVLD 136 Query: 130 RVSRE 134 RV Sbjct: 137 RVGHH 141 >gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii RHA1] gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1] Length = 169 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 15/136 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD------QILVRAIVNVT 56 + AR + L + LD + LS +D +V Sbjct: 10 ARHKARKRAVDFLFEAEARD------LDPVDLATERAELSGKDDSVAPVAPYTVTVVTGV 63 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 L R+D V+ L +L R + +LR++V ++ + DV VD AVE AK+ Sbjct: 64 AENLDRLDEVIRSHLQDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKQ- 122 Query: 115 KENRHFAKLVNSILRR 130 VN IL + Sbjct: 123 LSTDESPGFVNGILGQ 138 >gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium profundum 3TCK] gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium profundum 3TCK] Length = 155 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + D F + D Sbjct: 8 AARRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTDLNYFH 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++N ++ +D+ + L L LLR+++ ++ DV V++ A+E Sbjct: 68 DLLNGVVQNHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMTKRDDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRR 130 AK K VN +L + Sbjct: 128 LAK-LFGAEDSHKFVNGVLDK 147 >gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum BKT015925] gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum BKT015925] Length = 135 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 4/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R ++ LL + + L ++ + ++ L D + I+ + Sbjct: 2 NRRKSREIAMKLLFEMSINKEELKEII-HNFKENTDTNLKDVDFEYINKIIQGVQDNIED 60 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID+ ++ L L R +LR+S +I+++ DV + V+ +E AK+ + Sbjct: 61 IDSKIEENLTKWKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIELAKKYSA-ENS 119 Query: 121 AKLVNSILRRV 131 +N +L + Sbjct: 120 PAFINGVLGNM 130 >gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter antarcticus 307] gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter antarcticus 307] Length = 146 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + S+ + +++ D L R +V Sbjct: 1 MKS--ASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEGNEMAEGDVALFRILVET 58 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + +ID + D L L R +L+ L R + ++L D + V+ AK Sbjct: 59 AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELLGRDTPPRVAITEYVDVAKA 118 Query: 114 DKENRHFAKLVNSILRRVSRE 134 + K VN++L ++R+ Sbjct: 119 FFDGGEEPKFVNAVLDHMARQ 139 >gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM 6192] gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578] Length = 136 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 6/131 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+++ L L++ A + + + + ++ TL L Sbjct: 1 MGLRRKARILAFQALFASDGGGG---DGLEVFSFPWADGEIPEEVRTFAQLLLRGTLEHL 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 P +D ++ L R + + +LR+SV +LY ++ ++D AVE AK+ + Sbjct: 58 PEVDDLIKKHLEHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAKQF-GTQ 116 Query: 119 HFAKLVNSILR 129 + VN +L Sbjct: 117 DSYRFVNGVLD 127 >gi|170028291|ref|XP_001842029.1| Nop2p [Culex quinquefasciatus] gi|167874184|gb|EDS37567.1| Nop2p [Culex quinquefasciatus] Length = 492 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 26/236 (11%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++ +P VLD CAAPGGK + + DV + R+ ++ Sbjct: 262 FLLDGASILPALALDVQPGDRVLDACAAPGGKSLLLLQTLRPGTLVCNDVQESRVNRIRK 321 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWT 331 I DA + ++D +LVD PC++ + ++ + Sbjct: 322 LMGSYLYDFSANWKQKRCFITHGDARNLTEYDMYDRILVDVPCTTDRHSVMENDNNIFKS 381 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q LL + ++PGG +V+S CSL ++ VV L + + + Sbjct: 382 SRVKERLRLPELQAGLLANCLRLLRPGGSLVYSTCSLSPVQNDGVVHMALSNVFNDTGMT 441 Query: 388 VELVPLNSAYWKSID---MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V + L+ D A + + + P + + L R Sbjct: 442 VTVRDLSQVMQPFSDMYKFAYPNTLKYGQLVLPFLPVNFGP-------MYFCKLVR 490 >gi|325183686|emb|CCA18145.1| tRNA (cytosine5)methyltransferase NSUN2like protein putative [Albugo laibachii Nc14] Length = 709 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 98/308 (31%), Gaps = 51/308 (16%) Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTL 240 + + L + + F G+ D + +I +L Sbjct: 181 WTSHNKHSLWKVSVDAKTFRKKESLMNIYNFVYENTKF--GLIIRHDPTINILPELLSIQ 238 Query: 241 NNLSVLDLCAAPGGKTAQLIVSGAKVTALD-----------VSKRRLEKLRCNLDRLHLY 289 ++ +LDLC G + V + ++ D ++ + + Sbjct: 239 SSDRILDLCGGGGENGIRAPVIAERFSSPDSTGVLVVNETSIASGTVAIRNLSRTLTCSA 298 Query: 290 AEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRRHPDVLWT-RDTDDIVKSACFQ 344 + DY + D VL PCS G I R+ W V++ Q Sbjct: 299 NVIVTTHRILDYPQMESMNDGFDRVLCMVPCSGDGLI-RNCPEKWRTWTALKGVENHSKQ 357 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM- 403 KLL + +S VK GG V++ S++ ++E VV VL + VELV ++S + Sbjct: 358 IKLLTKALSLVKVGGTVLYCTRSMNPIENEAVVTAVLDNGLCEVELVDIHSIIDEKFPAF 417 Query: 404 -------AMALSPEGWIRI------------------TP------DMLEKIDGVSSGMDG 432 + A+ E + P D ++ + Sbjct: 418 LKHPGVESWAVFGEEMQTLSSCEKLNEKDKTKFSSTMWPKPKRNLDRCVRVLPHENDTHA 477 Query: 433 FFAVALRR 440 FF AL + Sbjct: 478 FFFAALTK 485 >gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN] gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN] Length = 174 Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + +D D + D A+++ + Sbjct: 35 SNRSRAREFALQALYQHIVGGNEA-AAIDAFTRD--LAGFHKADAAHYDAVLHGCIDAAA 91 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA++ +L + + + + V + + LDV V++ +E AK Sbjct: 92 DLDALITPLLDRKMAEISPIERATMWIGVYEFQHCLDVPWRVVLNECIELAKEFGGTDGH 151 Query: 121 A 121 Sbjct: 152 K 152 >gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242] gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242] Length = 150 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 9/135 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLR 58 ARL L + L + R + + R ++ L Sbjct: 6 RSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIGREIEGVQYKPAEVTFFRDVLQGVLT 65 Query: 59 FLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDK 115 ID +D VL L R + ++ LR ++ DV V+ V+ A Sbjct: 66 DQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDVAGAFF 125 Query: 116 ENRHFAKLVNSILRR 130 + +VN++L + Sbjct: 126 GPTE-SGMVNAVLDK 139 >gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium modesticaldum Ice1] gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium modesticaldum Ice1] Length = 206 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L R+ L S +S+ R +V + ID + Sbjct: 7 RETALQTLFMADVGRMEPAYALQYA---SEEFGISEAAAAFARELVEGAVANRETIDGNI 63 Query: 68 DFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + +L R + + LLRV++ ++L+ D+ A ++ A+E AK N AK VN Sbjct: 64 RRLAKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELAK-IYANEESAKFVN 122 Query: 126 SILRR 130 IL + Sbjct: 123 GILGQ 127 >gi|304436643|ref|ZP_07396612.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370339|gb|EFM23995.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 137 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 4/136 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +AR + L + + + A L+++D +V T P Sbjct: 2 SRRHAREAALLTLFQREFDQDRPPTVAAGDLASDAVDGLTEKDLAYANGLVQGTCSVQPE 61 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119 IDA ++ + L R + L+R++ ++ Y + ++ AVE AK+ + Sbjct: 62 IDAAIERMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKY-GSDD 120 Query: 120 FAKLVNSILRRVSREK 135 + VN IL + + Sbjct: 121 AGRYVNGILAALQKSM 136 >gi|224071335|ref|XP_002303410.1| predicted protein [Populus trichocarpa] gi|222840842|gb|EEE78389.1| predicted protein [Populus trichocarpa] Length = 394 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 21/165 (12%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT---------RDTDDI 337 L +++ + + +D VLVDA C+ G+IR + + Sbjct: 241 GLSKDELYQTVSSSEVSSSGYDKVLVDAECTHDGSIRHIQKFEHWGWETLNGRVLNAERS 300 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q KLL+ G ++ GG +V+S CSL +E VV+ L+ + + Sbjct: 301 DNLTTLQLKLLINGFRLLRVGGSLVYSTCSLTVSQNENVVEWFLKENSSAALQEIEAAKD 360 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 W + + +R P V+S G F +L Sbjct: 361 WPCKSGRIPKT----LRFDP--------VTSKTSGLFVAKFTKLA 393 >gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58] gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58] Length = 150 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 8/134 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R + +L ++ + L+ L + +V + Sbjct: 16 TARSRSRQRAVEILFEAEQRG---STALEGIRTRRESTDLQVN--AYTQRLVEGVIADQE 70 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 R+D L SL R +LRV ++L+ DV D + AV A Sbjct: 71 RLDEALSSYSRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEAVALA-AQLSTDD 129 Query: 120 FAKLVNSILRRVSR 133 + VN +L R+ + Sbjct: 130 SPEFVNGLLGRLQQ 143 >gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1] Length = 139 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++ AR + +L + + +L + + +V Sbjct: 1 MRARTKARKRALDILFEAEARGEAPLEVLTARRETDDAPPVQE----YAARLVEGVATHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID +L ++ R + LLR+ V ++L+ DV D + AVE A R Sbjct: 57 ERIDQLLAEHAEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVELA-RTLSTD 115 Query: 119 HFAKLVNSILRR 130 + VN +L + Sbjct: 116 DSPRYVNGVLGQ 127 >gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4] Length = 157 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56 + ARL + L ++ L LLD + + + IV Sbjct: 11 NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGV 70 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ID V+ L SL R ++Q+LR ++L DV V+ ++ A Sbjct: 71 GTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATVISEYIDVANA 130 Query: 114 DKENRHFAKLVNSILRR 130 +R VN +L Sbjct: 131 FY-DRQEKNFVNGLLDT 146 >gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271] gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271] Length = 154 Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTC----LLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M + R + + ++R ++ ++ LE G+ D + +V Sbjct: 11 MSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSD-AYLDRLVQGV 69 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY---LDVADYAVVDLAVEQA 111 + +D + L +L R +LRV+ ++LY +V V+ AVE A Sbjct: 70 NQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKVAVNEAVELA 129 Query: 112 KRDKENRH 119 K +++ Sbjct: 130 KTFSDDKS 137 >gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718] gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718] Length = 167 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ + + + S+ D ++ L + Sbjct: 26 SRELALQGIYQWQVTGGNARDI---GMQLQQVSFFSKADGPYFSDLLQGVLEHAADLQTQ 82 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L + +L + +++Y ++ A+++ A+E AK K VN Sbjct: 83 IQPHLDRQIAELSPVECSILLIGTYEMVYRPEIPCRAIINEAIELAKSYGGTDG-HKYVN 141 Query: 126 SILRR 130 +L + Sbjct: 142 GVLDK 146 >gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 187 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K + LLD + IV Sbjct: 1 MA-RSTARKRALNTLYEADEKNQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +ID LD + R + +LR++ +IL+ DV D +D A+ AK ++ Sbjct: 57 RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDD 116 Query: 119 HFA 121 A Sbjct: 117 SPA 119 >gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv. albensis VL426] gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv. albensis VL426] Length = 156 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + + + R D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ + +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1] gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1] Length = 165 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 7/135 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVTLR 58 ARL + L + SL + L++ D L R + + Sbjct: 22 RSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYEGDELAEGDPNLFRRTLEGAVE 81 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 ID + D L + R +L+ L R + A+++ V+ V+ A+ Sbjct: 82 RQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELVEGTAPPKVVITEFVDVARAFFP 141 Query: 117 NRHFAKLVNSILRRV 131 AK VN++L + Sbjct: 142 EGKEAKFVNAVLDHM 156 >gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24] gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24] Length = 136 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ +S +L + ++++ IV + Sbjct: 1 MSARGKARNRALDVLFEAEQRSLSAFDVL-RSRREKTDQIVNP----YTLEIVEGVVSHQ 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID L+ +L R + +LR+ ++LY DV D V AV AK Sbjct: 56 AAIDEFLETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKT-LSTD 114 Query: 119 HFAKLVNSILRRVSR 133 +N +L R+ + Sbjct: 115 ESPSFINGLLGRLQQ 129 >gi|58267524|ref|XP_570918.1| nucleus protein [Cryptococcus neoformans var. neoformans JEC21] gi|134112207|ref|XP_775079.1| hypothetical protein CNBE3530 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257731|gb|EAL20432.1| hypothetical protein CNBE3530 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227152|gb|AAW43611.1| nucleus protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 566 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 89/252 (35%), Gaps = 38/252 (15%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTAQL---IVSGAKVTAL 269 + G +QD ++ P ++ LD +APG KT+ + + + K+ A Sbjct: 236 EWYEGGGVILQDKASCFPARVLMEGWVEGEGECLDATSAPGNKTSYVSALMANRGKLHAF 295 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR- 324 + S R + L L++ D D PK +L+D CS +G + R Sbjct: 296 ERSPNRFKTLEKMLEKARCSNVQAQRADFTDTDPKSKEFKNVTRILLDPSCSGSGIVNRL 355 Query: 325 ------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 + ++ + K A FQ +++L F +V+S CS+ ++ E VV Sbjct: 356 DYLVDDDAEESDSKTER-LEKLASFQLQMILHAFKF-PSAQRIVYSTCSIHPEEDERVVM 413 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------GWIRITPDMLEKIDGVSS 428 L+S+ L S PE G IR P Sbjct: 414 AALQSNTAKENGWGLASRESVLPKWERRGRPEEMEGDEELANGVIRCLP---------ED 464 Query: 429 GMDGFFAVALRR 440 +GFF R Sbjct: 465 KTNGFFVSCFMR 476 >gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus RIMD 2210633] gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ3810] gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus K5030] gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AN-5034] gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus Peru-466] gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ4037] gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD 2210633] gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ3810] gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus Peru-466] gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AN-5034] gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus AQ4037] gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus K5030] Length = 155 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + + + R D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 +++ + +D+ + + + LLR+++ ++ DV V++ A+E Sbjct: 68 ELLSGVVLSHAELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa Temecula1] gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23] gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1] gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23] gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa subsp. fastidiosa GB514] Length = 157 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 5/117 (4%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 + ++ + A+ D + +V L +D L L + Sbjct: 33 VYAWQISGGVAKQVIAHFAHEQAY---EVADLVYFEDLVEGVLTHCAELDEKLTPYLDRT 89 Query: 75 LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +LR+ ++LY DV V++ A+ AKR +++ VN +L R Sbjct: 90 IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145 >gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] Length = 157 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 5/117 (4%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 + ++ + A+ D + +V L +D L L + Sbjct: 33 VYAWQISGGVAKQVIAHFAHEQAY---EVADLVYFEDLVEGVLTHCAELDEKLTPYLDRT 89 Query: 75 LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +LR+ ++LY DV V++ A+ AKR +++ VN +L R Sbjct: 90 IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145 >gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46] gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46] Length = 156 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 11/140 (7%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIV 53 MK ARL L + + L +++ + R ++ Sbjct: 1 MKPAERSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIEHPPAETAFFRDVL 60 Query: 54 NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110 + ID LD L L R + L+ +LR ++++ DV + V+ Sbjct: 61 RGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISEYVDV 120 Query: 111 AKRDKENRHFAKLVNSILRR 130 A LVN++L + Sbjct: 121 AHSFYGGDE-PGLVNAVLDK 139 >gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01] gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01] Length = 143 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRF 59 M AR ++ L V LDL + +D + + Sbjct: 1 MGKRRRARELALQSLFYVDSTSAPPLEALDLFCQNFP----PPKDLAQFFYELAKGVINN 56 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID +++ + L R L+R++ + L+ DV ++ A++ KR Sbjct: 57 QDEIDRLIEQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAIDIGKRF-GT 115 Query: 118 RHFAKLVNSILRRVSRE 134 +N IL + Sbjct: 116 AESGAFINGILDSIHLH 132 >gi|47230531|emb|CAF99724.1| unnamed protein product [Tetraodon nigroviridis] Length = 348 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 10/205 (4%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTAL------DVSKR 274 +++ +A++ +PV + +LDLC+APGGK ++ K Sbjct: 104 KQYYLLNAASLLPVLALKVRDGEKILDLCSAPGGKALVIMQCATPELLCCNEPDPHRQKW 163 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--LFDAVLVDAPCSSTGTI-RRHPDVLWT 331 + L L + D + ++ +D VLVDAPCS+ + Sbjct: 164 LTKTLESFLPHSVASRVIVSAHDGRYFGQREVGKYDKVLVDAPCSNDRSWLYSPSSQQGE 223 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 + + Q +LL +S V+PGG+VV+S C+L ++ VV+ VL+ P E Sbjct: 224 QRLKERAMLPVLQAQLLKSALSAVRPGGVVVYSTCTLSGAENYSVVETVLKDCP-EAEPE 282 Query: 392 PLNSAYWKSIDMAMALSPEGWIRIT 416 L S G + Sbjct: 283 DLLEELSVSTSKYFTFFKPGGHTLH 307 >gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus larvae subsp. larvae B-3650] gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus larvae subsp. larvae B-3650] Length = 133 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVLISS-LPR 77 + ++ ++D ++ + D + + +V TL RID +L L + R Sbjct: 9 KEAVDSVIDEALHENEGAVDLNGDTSAKPYIHELVEGTLTNRERIDQILSEYLKGWQMDR 68 Query: 78 KKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 +++LR++ ++LY D VV+ A+E AK K VN +L ++ +E Sbjct: 69 LSKVDREVLRMAAYEMLYRQDTPPKVVVNEAIELAK-HFGTDESGKFVNGVLGKLIKEM 126 >gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001] gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001] Length = 172 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 + ARL L + + L + + + R ++ Sbjct: 18 NTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDGVVHPPAETAFFRDVLRGA 77 Query: 57 LRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 + ID LD L L R + L+ +LR ++++ DV A + V+ A Sbjct: 78 VEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQYVDVAHS 137 Query: 114 DKENRHFAKLVNSILRR 130 +VN++L R Sbjct: 138 FYGGDE-PGMVNAVLDR 153 >gi|324999326|ref|ZP_08120438.1| tRNA/rRNA cytosine-C5-methylase [Pseudonocardia sp. P1] Length = 108 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%) Query: 330 WTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL--RSSPIP 387 W R +D QR+LL+ + V+PGG+V + CS ++ VV +++ P P Sbjct: 1 WRRRPEDTAALTRLQRELLVAALGHVRPGGVVAYVTCSPHVSETAGVVGRIVGREDRPGP 60 Query: 388 VELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V A L +++ P G D F +R+ Sbjct: 61 AGPVEQLDARACLPADLPGLGDGPAVQLWPH--------RHGTDAMFLALIRK 105 >gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827] gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + +++ + + + +S D I R +++ ++D ++ Sbjct: 11 ECAVQAIYSWQLSGNNVSDVEYEFIAE---QDMSDVDVIYFRELLSGVANNAAKLDQLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRV++ ++ Y DV ++ +E AK K VN + Sbjct: 68 PFLSRQLEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10] gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10] Length = 134 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK + AR+ + L V ++ + ++ D L+ +V L + Sbjct: 1 MKRRV-ARIKAIQALYQVEMTGVNPEEAIKTVLEEN-----ESMDPYLLT-LVERVLEEM 53 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D + + + L R + ++R+++ ++++ DV ++ A++ A+ + Sbjct: 54 DELDIKIQDSMDNWQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLARGFSGDE 113 Query: 119 HFAKLVNSILRR 130 K VN +L Sbjct: 114 ESGKFVNGVLSN 125 >gi|58267526|ref|XP_570919.1| nucleus protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227153|gb|AAW43612.1| nucleus protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 543 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 89/252 (35%), Gaps = 38/252 (15%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS---VLDLCAAPGGKTAQL---IVSGAKVTAL 269 + G +QD ++ P ++ LD +APG KT+ + + + K+ A Sbjct: 213 EWYEGGGVILQDKASCFPARVLMEGWVEGEGECLDATSAPGNKTSYVSALMANRGKLHAF 272 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR- 324 + S R + L L++ D D PK +L+D CS +G + R Sbjct: 273 ERSPNRFKTLEKMLEKARCSNVQAQRADFTDTDPKSKEFKNVTRILLDPSCSGSGIVNRL 332 Query: 325 ------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 + ++ + K A FQ +++L F +V+S CS+ ++ E VV Sbjct: 333 DYLVDDDAEESDSKTER-LEKLASFQLQMILHAFKF-PSAQRIVYSTCSIHPEEDERVVM 390 Query: 379 KVLRSSPIPVELVPLNSAYWKSIDMAMALSPE----------GWIRITPDMLEKIDGVSS 428 L+S+ L S PE G IR P Sbjct: 391 AALQSNTAKENGWGLASRESVLPKWERRGRPEEMEGDEELANGVIRCLP---------ED 441 Query: 429 GMDGFFAVALRR 440 +GFF R Sbjct: 442 KTNGFFVSCFMR 453 >gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252] gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252] Length = 165 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S R L + ++D + + T+ + Sbjct: 1 MHSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREA--LRFATQLFLRTINYS 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 D ++ + + L R + LLR+++ ++L + D+ ++ A+E AK+ + Sbjct: 59 EEADRLIADHVKNWDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIELAKKYSTEK 118 Query: 119 H 119 Sbjct: 119 S 119 >gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori SouthAfrica7] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter acinonychis str. Sheeba] gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str. Sheeba] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVIELLYAFESGNEEIKKIAPSMLEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|257216462|emb|CAX82436.1| Putative methyltransferase NSUN5 [Schistosoma japonicum] Length = 575 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 93/303 (30%), Gaps = 66/303 (21%) Query: 198 LPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA 257 + + ++ L + +QD ++ ++ N VLD CAAPG KT+ Sbjct: 215 HFPHMLLVFSSGTALYELELYKSRCILIQDKASCFSTEILQPDPNSDVLDACAAPGNKTS 274 Query: 258 Q---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA----- 309 Q ++ S + V A D R + L NL + +I D + K Sbjct: 275 QLISMMSSKSTVFAFDRDPNRFQCLTENLVANGVDRLSVI--DWPNSDSKHNKHRKSLQS 332 Query: 310 ---------------------------VLVDAPCSSTGTIRRHPDVLWTRDTDDIV---- 338 +L+D CS +G R PD + Sbjct: 333 SQPFVEASCTDFLSVDPYDPKFSNVQSILLDPSCSGSGLSIRQPDGEQQLKNSQLKGDYS 392 Query: 339 -------------KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSP 385 + + Q LL ++F +V+S CS+ +++E VVQ+ Sbjct: 393 TDTYNEEYLSRLKRLSNLQAMLLRHALNFPNVQ-RIVYSTCSIHPEENEAVVQENANRVS 451 Query: 386 IPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKID--------GVSSGMDGFFAVA 437 L + + +I + + ++ +GFF Sbjct: 452 DKFYLETI---WPNTIPLNSVDNITATPQVWKHRGLSEYQCESCIRSSQKDLTNGFFVAL 508 Query: 438 LRR 440 R Sbjct: 509 FVR 511 >gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis HKU09-01] gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus lugdunensis M23590] gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis HKU09-01] gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus lugdunensis M23590] Length = 128 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + L + K L+ + + L D + +V P Sbjct: 2 SRKESRTQAFQTLFQLEMKDSDLSISEAINFIKDDHPDL---DFTFIHWLVTGVKDHEPI 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D ++ L SL R + + +LR++ ++L+ D +++ AVE K+ ++ H+ Sbjct: 59 LDKAIEPHLKDWSLNRLLKTDRIILRMATFELLHSDTPPKVIINEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRRVS 132 +N +L ++ Sbjct: 119 -FINGVLSNIN 128 >gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori SJM180] gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori SJM180] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEGIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 414] gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. jejuni 414] Length = 132 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 6/130 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL + +D + R + + + L L Sbjct: 1 MATRHQVRQSVISLLYAFELNSQN-DVFIDEILDEKKIRN---EQKNFTLNLYHGILDNL 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID L+ L + + + + +LR+ ++L+ D V++ A+E AK N + Sbjct: 57 SNIDETLNSFLNDNQITALGHVERAILRLGAYELLFSDTPSAIVINEAIELAKE-LANDN 115 Query: 120 FAKLVNSILR 129 K +N +L Sbjct: 116 SPKFINGVLD 125 >gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2080] gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2080] Length = 148 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + L R +L + D+ F + R+++ ++ +D+ + + Sbjct: 18 ALQGLYQWSMTRANLAEIEAEFRIDNDFSHVDGE---YYRSLLTGVVQDAGDLDSSFEQL 74 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L + LLR+ ++ +DV V++ +V AK+ + + +N +L Sbjct: 75 LDRPLDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATDSY-RYINGVLD 133 Query: 130 RVSREKIE 137 +V+R + Sbjct: 134 KVARSYRQ 141 >gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula marina DSM 3645] gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula marina DSM 3645] Length = 137 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 4/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M R V +L + + + R+++ Sbjct: 1 MSKRSRVREVVLQILYQ-EDLNPEADIGVSERFLRGRLKHTEDL-VAFGRSLLVGVRLHR 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 IDA ++ + SL R + + +LR+ +IL+ + D ++ AVE +KR ++H Sbjct: 59 KAIDAKIEAFAENWSLARMAVTDRNVLRIGAFEILFSETPDRVAINEAVELSKRF-GSKH 117 Query: 120 FAKLVNSILRR 130 + VN +L R Sbjct: 118 SPQFVNGLLDR 128 >gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis AF2122/97] gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T92] gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T17] gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CPHL_A] gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T46] gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium tuberculosis K85] gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium tuberculosis T46] gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CPHL_A] gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T17] gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis K85] gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T92] gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium bovis AF2122/97] gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium tuberculosis T46] gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CPHL_A] gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis K85] gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T17] gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis T92] gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium tuberculosis EAS054] Length = 156 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + IS ++D + + R A+ I Sbjct: 10 RHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRVSV ++L+ DV + VVD AV+ AK Sbjct: 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128 Query: 122 KLVNSILRRVS 132 VN +L +V Sbjct: 129 GFVNGVLGQVM 139 >gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon] gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12] gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon] gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1] gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12] Length = 157 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 5/117 (4%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISS 74 + ++ + A+ D + +V L +D L L + Sbjct: 33 VYAWQISGGVAKQVIAHFAHEQAY---EVADLVYFEDLVEGVLTHCAELDEKLTPYLDRT 89 Query: 75 LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + + +LR+ ++LY DV V++ A+ AKR +++ VN +L R Sbjct: 90 IEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRF-GSKYGHTYVNGVLDR 145 >gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori Shi470] gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10] gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori B38] gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori Shi470] gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10] gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB), transcriptional antitermination factor [Helicobacter pylori B38] gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination factor [Helicobacter pylori 51] gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori v225d] gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori Cuz20] gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori Sat464] gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A] gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori India7] gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori F30] gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori F57] gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|158258138|dbj|BAF85042.1| unnamed protein product [Homo sapiens] Length = 335 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 75 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLAPGLQPGDIVLDLCAA 134 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 135 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 194 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 195 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLRATKPGG 254 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 255 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 314 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 315 VIPNLMANFGP-------MYFCKMRRLT 335 >gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori 26695] gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori J99] gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99] Length = 138 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075] gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075] Length = 142 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M +R ++ +L + L + + A ++ R +V + Sbjct: 1 MGDRSLSRELALKVLYQMEHGDQDAEAALTVFAENFAA---PEKLFAYTRQLVLGVEQNR 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 RID +L+ V + R + + +LR++ +I V A + A++ +KR E+ Sbjct: 58 RRIDEMLNRVSRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLSKRYAED 117 Query: 118 RHFA 121 + Sbjct: 118 CSCS 121 >gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni subsp. doylei 269.97] gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni subsp. doylei 269.97] Length = 132 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 12/133 (9%) Query: 1 MKSGMNARLVSSHLLSCVM---RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + R LL + + + +LD + + + + + L Sbjct: 1 MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKN-------FTLNLYHGIL 53 Query: 58 RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 L ID L+ L + + + + +LR+ ++L+ + V++ A+E AK Sbjct: 54 DNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTNTPSAIVINEAIELAKE-LA 112 Query: 117 NRHFAKLVNSILR 129 N + K +N +L Sbjct: 113 NDNSPKFMNGVLD 125 >gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692] gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692] Length = 147 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 11/146 (7%) Query: 1 MKSGMNA-----RLVSSHLLSCVMRKRISLT--CLLDLEYGD-SAFRLLSQRDQILVRAI 52 M + R + +L + + LL + + + + Sbjct: 1 MAKSTKSARRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQEEVGEAAADFAWEL 60 Query: 53 VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110 V +D ++ + R +LR+++ ++ + D+ ++ VE Sbjct: 61 VQGVWENRDELDELISRHSQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEGVEL 120 Query: 111 AKRDKENRHFAKLVNSILRRVSREKI 136 AK + VN IL ++ Sbjct: 121 AKEF-GDEQSRGFVNGILDAAAKACP 145 >gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus parasanguinis ATCC 15912] gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus parasanguinis ATCC 15912] Length = 143 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 4/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S R + L + + D + D + +V + Sbjct: 9 SRRELRERAFQALMALEYDGDIIEACRFAYLHDKDIAEDKEVDLPAFLMNLVTGVYQSKD 68 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + L ++ R + +LR+ + +I D V+ AVE AK + Sbjct: 69 QLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEFDTPQIVAVNEAVELAKAF-SDEI 127 Query: 120 FAKLVNSILRRV 131 ++ VN +L + Sbjct: 128 SSRFVNGVLSQF 139 >gi|195437726|ref|XP_002066791.1| GK24670 [Drosophila willistoni] gi|194162876|gb|EDW77777.1| GK24670 [Drosophila willistoni] Length = 505 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 16/204 (7%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKLRC 281 ++ D + +P VLD CAAPGGK + + DV + RL+KL+ Sbjct: 275 FLMDGGSILPPLFLQVQPGERVLDACAAPGGKSLLLLQTLHIDHLVCNDVQESRLKKLKH 334 Query: 282 NLD--------RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWT 331 + R DA + + +D +LVD PC++ +++ ++ Sbjct: 335 VMQEYLFDYKERWQGKRLIFNMGDARNLDEYESYDKILVDVPCTTDRHVLMQQDNNIFKP 394 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIP 387 + ++ Q +L + ++PGG +V+S CSL ++ VV L+ I Sbjct: 395 TRIKERLRIPELQSGILANCLRLLRPGGSLVYSTCSLSPVQNDGVVHMALQKVFNDHGIT 454 Query: 388 VELVPLNSAYWKSIDMAMALSPEG 411 + L+ D+ P+G Sbjct: 455 TTVRDLSQQVALFADIFKFEQPKG 478 >gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri ATCC 11577] gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii ATCC 8290] gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri ATCC 11577] gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii ATCC 8290] gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 137 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R ++ L + + + D + + + + + Sbjct: 4 TRHQIREIAFQTLFALNANKQTNKENFFEVLTDGKYGDEYPK---YLDELTTGVVDHKEE 60 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D +++ L S+ R + +L +++ ++L+ D+ ++ A+E AK+ ++R Sbjct: 61 LDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAIELAKKYSDDRS 120 Query: 120 FA 121 Sbjct: 121 RK 122 >gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum MIT 98-5489] gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum MIT 98-5489] Length = 148 Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 13/152 (8%) Query: 1 MKSGMNARLVSSHLLSCV----MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M + +AR V LL + + + + + + ++ Sbjct: 1 MATRSHAREVVVQLLYAYGSGNEKIGKFADEIFEE-------QKIKNNQKEFATSLFEGV 53 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 + L +D + L + + +LR+ V +I++ ++ ++ A+E AK Sbjct: 54 IANLEALDLRISHQLKDWDFSKIGDMEKAILRLGVYEIIFNHLSKAIAINEALELAKSF- 112 Query: 116 ENRHFAKLVNSILRRVSREKIELLQRIAGISI 147 N + AK +N +L +++ + Q Sbjct: 113 GNENSAKFINGVLDGIAKNLQDSSQTPHQPHQ 144 >gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437] Length = 148 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 6/134 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M R + L + E + +V +R + Sbjct: 1 MSRRT-VREKALQTLYQNEINPDGADRSMKKEARSLHDEAGEEA-SAFFLRLVRTVIRNM 58 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 PR+D V+ L L R + +LR++V ++LY ++ + A ++ AVE AK Sbjct: 59 PRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEAVELAKTF-ST 117 Query: 118 RHFAKLVNSILRRV 131 A+ +N +L + Sbjct: 118 EESARFINGVLGSM 131 >gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937] gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937] Length = 139 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R ++ ++DA + Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKGVDITYFRELLAGVATQAEKLDAQMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR++V ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L + Sbjct: 127 LDKAGPH 133 >gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 157 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 47/137 (34%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVT 56 + ARL + L ++ L LLD + + + IV Sbjct: 11 NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIEDATYTKAEPSFFDDIVRGV 70 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ID V+ L SL R ++Q+LR ++L DV ++ ++ A Sbjct: 71 GTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPTATIISEYIDVANA 130 Query: 114 DKENRHFAKLVNSILRR 130 +R VN +L Sbjct: 131 FY-DRQEKNFVNGLLDT 146 >gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12] gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As] gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12] Length = 202 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 5/147 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ + + + + L +++++ L Sbjct: 9 SARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTIKLDDD---HFQSLLHGALAEAG 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +DA++ + LL + ++ +LDV V++ AVE K + Sbjct: 66 PLDALIQPHIDRQTSELSPVEHALLLMGAFELQRHLDVPYRVVINEAVELGKVYGGTDGY 125 Query: 121 AKLVNSILRRVSREKIELLQRIAGISI 147 VN +L R++ + + A S Sbjct: 126 K-YVNGVLDRIAAQLRKTEVEAANQSH 151 >gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani AFC27] gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani AFC27] Length = 136 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 6/120 (5%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 L + + + + D + ++ + +D L L Sbjct: 1 MQGLYQWQLMGQDVDKIDIEFIV----QDIRGIDHAYFQELLRGVPQRQGELDECLGPFL 56 Query: 72 ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + +LR+ ++L ++ V++ A+E AKR H + VN IL + Sbjct: 57 DRPINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRF-GAEHGHRYVNGILDK 115 >gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970] gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970] Length = 138 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969] gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969] Length = 138 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQAIYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQLEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus agalactiae 2603V/R] gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus agalactiae NEM316] gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus agalactiae A909] gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae 18RS21] gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae H36B] gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae COH1] gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae CJB111] gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae 515] gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae 2603V/R] gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316] gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae A909] gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae 18RS21] gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae 515] gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae CJB111] gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae COH1] gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae H36B] gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae ATCC 13813] Length = 144 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 13/137 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVTL 57 S + R + L + + + + D++ + +VN + Sbjct: 8 SRRDLRERAFQTLFSLETGGEFIDAA----HFAYGYDKTVSEDKVLEVPIFLLNLVNGVV 63 Query: 58 RFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 +D ++ L SL R + LLR+ + +I Y D D ++ +E AK+ Sbjct: 64 DHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEIIEIAKKY 123 Query: 115 KENRHFAKLVNSILRRV 131 + AK VN +L + Sbjct: 124 -SDETSAKFVNGLLSQF 139 >gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52] Length = 138 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSILEEKKIKN---NQLAFALSLFNGVLEKI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum deleyianum DSM 6946] gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum deleyianum DSM 6946] Length = 136 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 5/134 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + +D + + R + + + L Sbjct: 1 MATRHQARESIITLLYAEDIGNAGIDKFIDELFEEKKIRN---QQKEFALGLYQGVKAHL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L +L + +LR+ +ILY ++ + V++ A+E AK+ N Sbjct: 58 SVIDEAINRHLKEWNLSEIGMLERAILRLGGYEILYSELDNAVVINEAIELAKKLC-NET 116 Query: 120 FAKLVNSILRRVSR 133 K +N +L + + Sbjct: 117 SPKFINGVLDAICK 130 >gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2] gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2] Length = 153 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-----FRLLSQRDQ--ILVRAIV 53 MK + AR ++ L + ++ +D+ ++ + DQ VR +V Sbjct: 1 MKRRL-AREIAVSSLYQLEMNEVTPMEAVDMLMEEARSENEIEAEFVENDQTDNYVRELV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 N ID L L + R +Q+LR++ +I Y DV A ++ A+E A Sbjct: 60 NGVAENKAAIDERLQHYLTGWQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELA 119 Query: 112 KRDKENRHFAKLVNSILRR 130 K K VN +L + Sbjct: 120 K-HFGTEESGKFVNGVLGK 137 >gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC 15579] gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC 15579] Length = 143 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 14/142 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLE-----------YGDSAFRLLSQRDQILVRA 51 + +R V+ LL +L L+ D L D V+ Sbjct: 2 NRRKSREVAMRLLFQTTLNEENLEVALENLKDVRESEESAKEKDYESVDLKDVDIDYVKR 61 Query: 52 IVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109 I+ ID + L + + R +LR+ ++ + D+ V+ A+E Sbjct: 62 IIKGIEENKEEIDEKIKGNLKNWKIERLSKVDLSILRLCTYELKFEEDIPSKVSVNEAIE 121 Query: 110 QAKRDKENRHFAKLVNSILRRV 131 AK+ + A +N +L ++ Sbjct: 122 LAKKYSGEK-AATFINGVLGKM 142 >gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511] gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511] Length = 143 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 4/120 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + R + + + T+ L Sbjct: 1 MATRHQARRAVVGLLYAYDLGNDGIEKFSEEILESDKIRN---KQREFSMRLFKGTIENL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID + L + + +LR+ +IL +++ AVE AK + + Sbjct: 58 DKIDEEIQKHLESWDYSKIGKVEKAILRLGAYEILIEGTDRPIIINEAVELAKELADEKS 117 >gi|167534415|ref|XP_001748883.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772563|gb|EDQ86213.1| predicted protein [Monosiga brevicollis MX1] Length = 351 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 31/231 (13%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCN 282 +++ D S+ + +VLDLCAAPGGK L + ++R + Sbjct: 108 YYLMDPSSILAALALNVQPGDTVLDLCAAPGGKALILAEQLDGRGHIQANERASGRQSRL 167 Query: 283 LD--------RLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R+ + +D K+ + +LVDAPCSS + D L Sbjct: 168 QRVMIDYLPERIRHKGVRVTGLDGTRARALGKEQYSKILVDAPCSSDRHVLMDLDELAVW 227 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 I ++ Q +LL +KPGG VV+S C+L ++++VV+ +++ S + + Sbjct: 228 SPTRIRANSKRQIQLLWAAAQALKPGGTVVYSTCALSDMENDDVVRTIIKRSGGTLSVDS 287 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGF---FAVALRR 440 +++ + G+I PD GF + L + Sbjct: 288 TCPSWFAEP------TECGFI-ALPDRS-----------GFGPLYFARLVK 320 >gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644] gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644] Length = 177 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L + ++ R S RD+ R ++ R ID V+ Sbjct: 10 REIVLQVLYMLDHNTGLSQEEIEQFLAW-RLREPSWRDEA--RGLIEGVRRHRETIDQVI 66 Query: 68 DFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + L R + +LR+ ++LY LDV + AVE KR + ++ VN Sbjct: 67 SDLARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVELVKRF-GSAQSSRFVN 125 Query: 126 SILRRVSR 133 IL RV Sbjct: 126 GILGRVPH 133 >gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b] gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b] Length = 168 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEY-----GDSAFRLLSQRDQILVRAIVNVT 56 K AR + L + + ++ ++ + + D +L ++ Sbjct: 23 KMRSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYDEGDMVEGDPVLFGQLMRDA 82 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + + ID + D L + R +L+ L R + A++ D V+ V+ AK Sbjct: 83 VNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQSDTPPKVVIMEFVDIAKSF 142 Query: 115 KENRHFAKLVNSILRRV 131 + VN++L + Sbjct: 143 YPEGKESSFVNAVLDHM 159 >gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56'] gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56'] Length = 140 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +L V S ++ + ++ + +V L Sbjct: 1 MGARSTGREAALQMLFAVEAGGSSAPRVVATFWRETPG---DPEGRAYADEVVVGVAEDL 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +D + + L R + +LR+ +++ +V ++D AVE AKR Sbjct: 58 AAVDEAIRKASTNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVELAKRYGSEE 117 Query: 119 HFA 121 A Sbjct: 118 SGA 120 >gi|50308649|ref|XP_454327.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49643462|emb|CAG99414.1| KLLA0E08361p [Kluyveromyces lactis] Length = 491 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 74/461 (16%), Positives = 136/461 (29%), Gaps = 83/461 (18%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDF---VLISSLPRKKYSL-QQLLRVSVAQILYLDVADYA 102 + AIV+ T ++ +D ++ + + K + +R+ V +L Sbjct: 46 RHIYAIVSSTWQYREYLDKIIKKSGILEDVPKKKGKPLFNKDTIRLLVHDLLLSKSKRIQ 105 Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162 + ++ + R A+L ++ +L++ G + P + R+ K Sbjct: 106 MGKHPIKTFILKHQTRLKAELTKLKVKLKVTSLSQLIKTDDGEDVTPVRWI-RINPILVK 164 Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPES---IVSLPGFA 219 ER + + +W + + I I S + Sbjct: 165 ERYDDVLAELNKKFPQRVN------SWKQIVPGSIYYDEYIPNLFGIHPGDKITSHEQYK 218 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGA----------KVTAL 269 G +QD ++ P + + V+D CAAPG KT + K+ A Sbjct: 219 RGKIIIQDRASCFPAHILNPNSTDVVIDACAAPGNKTTHVAAHIFGDVDTKVDSVKIHAF 278 Query: 270 DVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIRRH 325 + R + L+ + I D + +VD CS +G R Sbjct: 279 EKDPERAKTLQMMVATAGCAKGVKIHVGDFTKLGKPELFQNVTGFIVDPSCSGSGIFGRK 338 Query: 326 PDVLWTRDT------------------------------DDIVKSACFQRKLLLQGISFV 355 + + K + FQ +++ +SF Sbjct: 339 AIDKVNLSKTGSSNTDEDQTSVEPVEQEKELFEKEQDLKNRLAKLSSFQYQIVKHAMSF- 397 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSS----------------PIPVELVPLNSAYWK 399 + +S CS+ +++E VV +L S P + Sbjct: 398 PSAKKICYSTCSIHAEENERVVIDLLLDSKVKEWGWKVRKRTGVIPTWPRRGWTSEFEEV 457 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG IR P G GFFAV R Sbjct: 458 FPKEEAKELAEGCIRALP--------KEDGGIGFFAVCFER 490 >gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC 33641] gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC 33641] Length = 138 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L +++ Sbjct: 127 LDKIAPM 133 >gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1] gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1] Length = 155 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 6/132 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR V+ L + +L+ D+ + D R IV L Sbjct: 1 MKLRTRARAVALEALYEIDLTNHLPGDVLEERIKDAKLQD-ELAD--FAREIVMGVLPIT 57 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ++D + L + + +LR+++ + ++ AVE AK+ + Sbjct: 58 HQLDVQIAKHAPEWPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVELAKKY-GSD 116 Query: 119 HFAKLVNSILRR 130 A+ VN +L Sbjct: 117 SSARFVNGVLGS 128 >gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum DJO10A] gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705] gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A] gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68] gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum JCM 1217] gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705] gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A] gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum F8] gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68] gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. longum JCM 1217] Length = 190 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K + LLD + IV Sbjct: 1 MA-RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +ID LD + R + +LR++ +IL+ DV D +D A+ AK ++ Sbjct: 57 RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAKTLCDDD 116 Query: 119 HFA 121 A Sbjct: 117 SPA 119 >gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1] gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1] Length = 171 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D RAIV + Sbjct: 23 ARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC 29799] gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 13/129 (10%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-----------SQRDQILVRA 51 + NAR ++ HL + + LLD + F L+ + + + + Sbjct: 49 TRTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYAEYPNAKQREYISE 108 Query: 52 IVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVE 109 +V P +D + + + R ++RV++ +ILY+ DV + A ++ A+E Sbjct: 109 LVRGVYFHCPELDDYISRYAIGWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAAINEALE 168 Query: 110 QAKRDKENR 118 AK + Sbjct: 169 IAKGYETPE 177 >gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative [Roseobacter denitrificans OCh 114] gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative [Roseobacter denitrificans OCh 114] Length = 145 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + ++ + + + D L A++ Sbjct: 1 MKS--AARLYAVQALFQMEHSGQTIEAVRREFLDHRFGETYDGQEMLDGDVDLFGAVIEG 58 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + D L L R +L+ L R + A++ D V+ V+ A+ Sbjct: 59 AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAELNGKDTPPKVVISEYVDVARA 118 Query: 114 DKENRHFAKLVNSILRRV 131 E+ KLVN +L + Sbjct: 119 FFEDGKEPKLVNGVLDHM 136 >gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales bacterium GD 1] gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales bacterium GD 1] Length = 134 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +AR+ LL S+ D + R + + A+ + L Sbjct: 1 MATRHHARMAVVSLLYAYDLGNGSIADHTDEILEEKKIRN---KQKDFALALFEGVMENL 57 Query: 61 PRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 D A+++ + R + LR++ +IL+ ++ V++ AVE K Sbjct: 58 EACDKAIIEHLKEWDFERLGAIERATLRLATYEILFGELDSAVVINEAVEITKAF-GTEQ 116 Query: 120 FAKLVNSILR 129 K +N +L Sbjct: 117 SPKFINGVLD 126 >gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp. 12_1_47BFAA] gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis 157F] gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp. 12_1_47BFAA] gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum subsp. infantis 157F] Length = 190 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K + LLD + IV Sbjct: 1 MA-RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +ID LD + R + +LR++ +IL+ DV D +D A+ AK ++ Sbjct: 57 RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDD 116 Query: 119 HFA 121 A Sbjct: 117 SPA 119 >gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus 2336] gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336] Length = 144 Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S ++L + + D R + + T+ + Sbjct: 9 SPRRRARECAVQNLYSWAISKNSPEE-IELNFIVDQDNEMKGVDMPYFRKLFHQTINHVE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID+ + L +LR++V ++ + LDV V++ A+E AK Sbjct: 68 TIDSTMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAK-VFGAEES 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve DSM 20213] gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve DSM 20213] Length = 176 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K + LLD + IV Sbjct: 1 MA-RSTARKRALNTLYEADEKGQDILSLLDERIAHPGAQTPLPD---YAIDIVKGVAEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +ID LD + R + +LR++ +IL+ D V D +D A+ AK ++ Sbjct: 57 RQIDMTLDDHSTGWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAKTLCDDD 116 Query: 119 HFA 121 A Sbjct: 117 SPA 119 >gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus RUH2202] gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus RUH2202] Length = 149 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + + + + ++A + D ++ + Sbjct: 10 AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQRD 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +DA+L VL L LR+ ++ +L+V V+D A+E AK Sbjct: 67 DLDALLIPVLDRELDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADS 125 Query: 121 AKLVNSILRR 130 K +N +L R Sbjct: 126 HKYINGVLDR 135 >gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga neapolitana DSM 4359] gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga neapolitana DSM 4359] Length = 135 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 8/126 (6%) Query: 8 RLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 RL L RK L +L+ +S + + +R I L ID + Sbjct: 2 RLAVFKALFQHEFRKDEDLEQILEEILDNSYDEKAKKDARRYIRNI----KEHLQTIDDL 57 Query: 67 LDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L ++ R + +LR+ ++LY D+ ++ A+E AKR + K V Sbjct: 58 ISRYLERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINEAIEIAKRY-GTENSGKFV 116 Query: 125 NSILRR 130 N IL R Sbjct: 117 NGILDR 122 >gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica subsp. palearctica Y11] gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica W22703] Length = 138 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAADSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus DSM 3776] gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus DSM 3776] Length = 163 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR V +L K ++ + L + + + + F Sbjct: 3 MSRRHKAREVVLQMLY---LKDLNPDVGFEQIRQMIQAELPDETLSRFAWGLFSGAMEFR 59 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 P +D ++ + SL R + + +LR+ ++L D V+D A+E AK + Sbjct: 60 PALDKKIEEAAVNWSLSRMAPTDRNVLRLGAYELLQTDTPHRVVIDEALELAKSF-GGAN 118 Query: 120 FAKLVNSILRR 130 VN IL R Sbjct: 119 SGSFVNGILDR 129 >gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis Bem] gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis Bem] Length = 145 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 7/128 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNV 55 M + R ++ L L + ++ + +VN Sbjct: 1 MTTRREGRELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKAYAFASELVNG 60 Query: 56 TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 + L ID+ + S+ R +LR++V ++LY D+ ++ A+E AK+ Sbjct: 61 VVSNLQAIDSRIAEKSKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIEVAKK 120 Query: 114 DKENRHFA 121 + + Sbjct: 121 FGADDSAS 128 >gi|238926870|ref|ZP_04658630.1| transcription antitermination protein NusB [Selenomonas flueggei ATCC 43531] gi|238885402|gb|EEQ49040.1| transcription antitermination protein NusB [Selenomonas flueggei ATCC 43531] Length = 137 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 4/136 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +AR + L + + A L+++D +V T P Sbjct: 2 SRRHAREAALLTLFQREFDHDRPPIVAAGDLASDAVDGLTEKDLAYANRLVQGTCSVQPE 61 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119 IDA ++ + L R + L+R++ ++ Y + ++ AVE AK+ + Sbjct: 62 IDAAIECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVELAKKY-GSDD 120 Query: 120 FAKLVNSILRRVSREK 135 + VN IL + + Sbjct: 121 AGRYVNGILAALQKSM 136 >gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S] gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S] gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC 33707] Length = 167 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + + + ++ +V L Sbjct: 10 ARHKARKRAVDFLFEAEARDVDPVDLADERSDLAGRDDSVAPV-APYTVTVVQGVAENLD 68 Query: 62 RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 R+D V++ L +L R + +LR++V ++ + DV VD AVE AK Sbjct: 69 RLDQVIESHLQDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEAVELAKE-LSTDD 127 Query: 120 FAKLVNSILRR 130 VN +L + Sbjct: 128 SPGFVNGVLGQ 138 >gi|126305772|ref|XP_001375367.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 4 protein [Monodelphis domestica] Length = 394 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 28/280 (10%) Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVS-LPGFAEGV----WWVQDASASIPVQLF 237 ++ET I P + +++ DAS+ +PV Sbjct: 123 PPELETLPSPRAPWPYSPNLHCYTFTRGDISRFHPARVSSLGLLDYYLMDASSLLPVLAL 182 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSK---RRLEKLRCNLDRLHLYAED 292 G +VLDLCA PGGKT L+++G A D+S RRL+++ + + Sbjct: 183 GVQPGDTVLDLCAGPGGKTLALLLTGCCRHLAANDISTSRTRRLKQVLHSYVPQDVSQVR 242 Query: 293 IIEMDAFDYCP--KKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + D + + +D VLVD PC++ + ++ + Q +LL Sbjct: 243 VTSQDGRKWGDLERSTYDRVLVDVPCTTDRHSVLEEDNNIFKRSRKVERQMMPMLQVQLL 302 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVV---QKVLRSS---PIPVELVPLNSAYWKSID 402 + G+ KPGG+ V+S C+L +E VV +L + VE + ++ Sbjct: 303 VAGLLATKPGGVAVYSTCTLSHLQNEYVVGGAIDILANQYQIDAQVEELSSFRHLFQDTF 362 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 P G + + P + + LRRL Sbjct: 363 SFFPSCPLGEL-VLPVLWANFGP-------MYFCRLRRLT 394 >gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330] gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC 25840] gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC 23365] gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo] gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3 str. 686] gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis M163/99/10] gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis B2/94] gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti M644/93/1] gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1] gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis M292/94/1] gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33] gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti M490/95/1] gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94] gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM 4915] gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99] gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40] gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99] gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL 07-0026] gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330] gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC 25840] gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC 23365] gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo] gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM 4915] gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40] gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99] gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5 str. 513] gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL 07-0026] Length = 171 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D RAIV + Sbjct: 23 ARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium capsulatum ATCC 51196] gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium capsulatum ATCC 51196] Length = 144 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 4/119 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +R ++ +L + + + + A + + + V + Sbjct: 6 KRRKSRELAMQMLFQADVGKQTPDDVRKTFWE--AREEVEPDTRGFAEDLFRVAMNREEE 63 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119 ID +++ + L R + +LR+++A++L + +++ A+E A+R Sbjct: 64 IDTLIEQHSANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINEALEIARRYSAPES 122 >gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190] gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190] Length = 139 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M++ AR + +L + +L +S +V + Sbjct: 1 MRARTKARKRALDILFESEARGDDPLEVLRNRRETDDAPPVSD----YAALLVQGVVEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID +L ++ R + LLR+ V ++L++D + D + AVE A R Sbjct: 57 ERIDQLLAEHAEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEAVELA-RTLSTD 115 Query: 119 HFAKLVNSILRR 130 + +N +L R Sbjct: 116 DSPRFLNGVLGR 127 >gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi ATCC 49188] gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188] Length = 168 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D RAIV + Sbjct: 23 ARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVDEQL 82 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1] gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1] Length = 130 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL ++ D + R + + + + T+ L Sbjct: 1 MATRHQARTAVVGLLYAYDLGNENIAKFSDEILEEDKIRN---KQRDFSHDLFDGTIENL 57 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +DA ++ L + +LR+ +IL +++ AVE AK + + Sbjct: 58 EMLDAEIEKHLTDWDYDAIGRVEKAILRLGAYEILVAKTDRAIIINEAVELAKSLADEKS 117 >gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80] gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52] gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395] gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587] gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3] gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33] gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39] gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2] gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286] gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33] gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21] gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9] gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM 11079-80] gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)] gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae MJ-1236] gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226] gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10] gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101] gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1] gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27] gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93] gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385] gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757] gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80] gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52] gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587] gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3] gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33] gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395] gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39] gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226] gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2] gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395] gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)] gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM 11079-80] gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9] gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21] gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33] gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286] gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236] gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10] gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101] gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27] gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1] gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93] gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385] gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757] gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4] Length = 156 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + + + R D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ + +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|71033341|ref|XP_766312.1| hypothetical protein [Theileria parva strain Muguga] gi|68353269|gb|EAN34029.1| hypothetical protein TP01_0791 [Theileria parva] Length = 403 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 74/204 (36%), Gaps = 17/204 (8%) Query: 251 APGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL---------HLYAEDIIEMDAFDY 301 + + + K R ++L R H+ + DA + Sbjct: 204 NINKSMLSEKHGESLLVCNEAVKSRYKRLIETSKRFIPDKFISGKHIQFVNYDATDANKF 263 Query: 302 CPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIV 361 FD +L+DAPCSS + + I +++ Q KLL IS +K GG + Sbjct: 264 QRFGKFDKILIDAPCSSERHLIHKNL---SWSVKSIKENSKRQLKLLQTAISLLKSGGTI 320 Query: 362 VFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM-L 420 ++ C+LD ++E V+ +L++ + ++ L + + P+ Sbjct: 321 LYCTCALDPIENEMVINTILKAYDDMKHVEISYKDLINNVTSGKNLGSMDYNKFKPEKRT 380 Query: 421 EKIDGVSSGMDGF---FAVALRRL 441 + D F + L++L Sbjct: 381 YGCSIMPDKSD-FGPLYIAKLQKL 403 >gi|50294476|ref|XP_449649.1| hypothetical protein [Candida glabrata CBS 138] gi|49528963|emb|CAG62625.1| unnamed protein product [Candida glabrata] Length = 492 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 93/286 (32%), Gaps = 54/286 (18%) Query: 207 ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---- 262 + + I S + +G +QD ++ P + + V+D C+APG KT + Sbjct: 208 HISDKITSHELYKQGKIIIQDRASCFPAHILNPSADDVVIDACSAPGNKTTHVAAHIFGD 267 Query: 263 -------GAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLFD---AVL 311 ++ A + R + L+ + + D+ D + + Sbjct: 268 PENPRNDNVQIYAFEKDPERAQILQKMIKTAGCHKNIDVNVGDFTQIATPSKYSDVTGFI 327 Query: 312 VDAPCSSTGTIRR------HPDVLWTRDTDDIV-------------------KSACFQRK 346 +D CS +G R + + D K A FQ + Sbjct: 328 LDPSCSGSGIFGRKSVDILNNHGKKSNDEVPDENDAEETTDSKNEQLKERLSKLASFQFQ 387 Query: 347 LLLQGISFVKPGGI-VVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNSAYWKS 400 ++ +SF P +V+S CS+ +++E VV +L +S V L W Sbjct: 388 IVRHAMSF--PNAKKIVYSTCSIHAEENERVVIDLLLDKKVQSWGWRVAKKELVLPTWYR 445 Query: 401 IDMAMALSP------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E + D + G GFFAV R Sbjct: 446 RGFKEEFQEVFTDKTEQECQELADGCVRALPKEDGGIGFFAVCFVR 491 >gi|124511684|ref|XP_001348975.1| methyltransferase, putative [Plasmodium falciparum 3D7] gi|23498743|emb|CAD50813.1| methyltransferase, putative [Plasmodium falciparum 3D7] Length = 1193 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 46/183 (25%) Query: 304 KKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVF 363 KK FD++L D PCS GT+R+ +V + ++ Q +L + I K G +V+ Sbjct: 422 KKNFDSILCDVPCSGDGTLRKDRNVWINWNPNNAYNLFQMQVNILKRSIELTKENGYIVY 481 Query: 364 SNCSLDKQDSEEVVQKVLR--SSPIPVELVPLNSAYWKSIDMAMALSPEG---------- 411 S CSL+ ++E V+ ++ + ++L+ + ++ A+ Sbjct: 482 STCSLNPIENEAVICEIFNSVENLDCLKLINFQNELLTKLNYEKAVKQWKVVMDDIWFDT 541 Query: 412 ------WIR-----------------ITP-----------DMLEKIDGVSSGMDGFFAVA 437 +++ + P + ++ GFF Sbjct: 542 YEQYCSYLQNKESGKYKKIYEKIQEGMFPPCEEFINSINLNYAKRFFPHHYNAGGFFIAV 601 Query: 438 LRR 440 +++ Sbjct: 602 IQK 604 >gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573] gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341] gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451] gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586] gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573] gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341] gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451] gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586] Length = 156 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + + + R D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ + +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLAGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus 12G01] gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25] gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B] gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus 12G01] gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25] gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B] Length = 155 Score = 81.1 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50 + NAR + + + ++ + + + + D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 +++ + +D+ + + + LLR+++ ++ DV V++ A+E Sbjct: 68 ELLSGVVLSHAELDSKIRPYISRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|320529119|ref|ZP_08030211.1| transcription antitermination factor NusB [Selenomonas artemidis F0399] gi|320138749|gb|EFW30639.1| transcription antitermination factor NusB [Selenomonas artemidis F0399] Length = 137 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 4/134 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +AR + L + + E A L ++D + +V T + Sbjct: 2 SRRHAREAALLTLFQMDFSANEASLYDVSEIAAGAVEGLKEKDLPYAQGLVRGTRAAIGE 61 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119 IDA + L R + L+R++ ++ Y + ++ AVE AK+ Sbjct: 62 IDAAIARSAKEWKLERMPGVDRNLIRMAFYEMYYQEERIDPGTAINEAVELAKKY-GAED 120 Query: 120 FAKLVNSILRRVSR 133 + VN IL + + Sbjct: 121 AGRYVNGILSAMQK 134 >gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060] gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060] Length = 156 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 11/140 (7%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIV 53 MK ARL L + + L +++ + R ++ Sbjct: 1 MKPAERSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIEHPPAETAFFRDVL 60 Query: 54 NVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110 + ID LD L L R + L+ +LR ++++ DV + V+ Sbjct: 61 RGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISEYVDV 120 Query: 111 AKRDKENRHFAKLVNSILRR 130 A LVN++L + Sbjct: 121 AHSFYGGDE-PGLVNAVLDK 139 >gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ] gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ] Length = 177 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 6/132 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRF 59 S AR + L ++ + + L + + D Q +V+ Sbjct: 30 SRRKARKQAFECLYGLIFESAADERSLRRVFARCPHDVAEGEDGSGQEFAWELVSGVWTN 89 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +DA + + L R +LR++V +ILY D+ ++ A+E AKR + Sbjct: 90 QRELDAHIVRFSKNWKLSRIAKVELTILRLAVYEILYRSDIPLRVALNEAIELAKRY-GD 148 Query: 118 RHFAKLVNSILR 129 + +N IL Sbjct: 149 ENSRNFINGILD 160 >gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis ATCC 49540] gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis ATCC 49540] Length = 136 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTLR 58 M + R + +L K+ + L Y S D+ ++ +V Sbjct: 2 MPNRHAIREEAFQILFA---KQSNPDATLTDIYESLP----SHADKIPAYLQTLVEGVSE 54 Query: 59 FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 ++D + +L S + R + +LR+++ +I ++D V ++ A+E AK Sbjct: 55 HQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEIQFVDEVPTVVAINEALELAKTYS 114 Query: 116 ENRHFA 121 ++ Sbjct: 115 NDKSRK 120 >gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae Ep1/96] gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora CFBP1430] gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946] gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96] gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM 12163] gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946] gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora CFBP1430] gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617] gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC BAA-2158] Length = 139 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D R +V +D ++ Sbjct: 11 ECAVQALYSWQISK---NDIADVEYQFLAEQDVKDVDITYFRELVGGVATHSAYLDDLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PFLSRQLEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + + Sbjct: 127 LDKAAPQIRPN 137 >gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH] gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH] Length = 146 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 4/138 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+++ + + + + D+ + L + ++ +VN T L Sbjct: 3 MNLRHKARVLAFQKIYSIDVNCKAKDNIYDIFGLEDHGVDLEEDLKLFYSVLVNGTCDNL 62 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 ID ++ + L L R +LRVSV + + LDV ++D A+ AK+ + Sbjct: 63 ESIDKLISDISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVIIDEAILIAKKY-GS 121 Query: 118 RHFAKLVNSILRRVSREK 135 ++ K VN IL + ++ Sbjct: 122 KNSYKFVNGILDALLKDM 139 >gi|323210797|gb|EFZ95672.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 241 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 11/84 (13%) Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S C+L++Q++E V + + VE +PL + D AL+PEG++ + P Sbjct: 1 GGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP---DADRALTPEGFLHVFP 57 Query: 418 DMLEKIDGVSSGMDGFFAVALRRL 441 + + GFF LR++ Sbjct: 58 QIYDCE--------GFFVARLRKM 73 >gi|254169079|ref|ZP_04875916.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] gi|197621918|gb|EDY34496.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] Length = 355 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 40/302 (13%) Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTVK---FDIETWAHKLNAVMLPTGGIRL 205 P + L + + L V D + +L + Sbjct: 83 PHHIRNSLSLKLAEVTSREFIEIINREPDTVLCVNLAKIDRDKAIEELEREGIDAEEFIP 142 Query: 206 KELPESIVS---LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLI-- 260 + ++ G+ VQD+S+ I +L VLD CA GGK+ + Sbjct: 143 ESAIKADSKARYSSLIKNGLAIVQDSSSQIIAKLTS-SLGEEVLDYCAGSGGKSLAMHAL 201 Query: 261 VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG 320 K+ D+++R+L+ L + + + F P F VLVDAPCS G Sbjct: 202 NPNLKIHTYDINERKLKSLENRAKKWG------MNVHIFYDKPSGEFPVVLVDAPCSGVG 255 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+P+ + +D K A Q ++L + VK G +V+ CS ++E ++ + Sbjct: 256 AAARNPEAKYR---EDFEKFAKMQMEILNEAKENVKSNGYLVYVVCSYTPWETENLIGEF 312 Query: 381 LRSSPIPV--ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L +P + E+ Y K + + D F+ L Sbjct: 313 LNKAPYFIPQEIKCEYERYIKKGNYGAYILA--------------------GDIFYISVL 352 Query: 439 RR 440 RR Sbjct: 353 RR 354 Score = 39.5 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 17/97 (17%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ ++ MRK + D+ LS ++ V IV+ +R+ D +++ Sbjct: 4 KIAVRVIRKWMRKGNMARAMRDIL----PRSGLSFEEREQVARIVHDVVRYKLYYDYIME 59 Query: 69 FV-------------LISSLPRKKYSLQQLLRVSVAQ 92 L + ++ L + +A+ Sbjct: 60 KRGMKKNAENYVKLSLKKPKVNAPHHIRNSLSLKLAE 96 >gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC 27678] gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium ATCC 27679] gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium JCVIHMP022] gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC 27678] gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium ATCC 27679] gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium JCVIHMP022] Length = 147 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 8/124 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M AR + + L K L+ L + A L IV Sbjct: 1 MA-RSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD----YAIEIVRGVAEN 55 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 L RID+VLD + R + +LR++V +I++ DV + +D A+ AK ++ Sbjct: 56 LYRIDSVLDEHSTGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDD 115 Query: 118 RHFA 121 A Sbjct: 116 DSPA 119 >gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha JMP134] gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134] Length = 167 Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ L + R + ++ + ++ D A++N +R Sbjct: 28 SARRRSRELALQGLYQWLLNR---NDIGAIQAHLHDAQGFNKADSEHFDALLNGAVREEA 84 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 R+ A + L + + L V ++++ D+ V++ AVE K + Sbjct: 85 RLTAAFEPFLDRKVEELSPVERAALLVGSYELVHCVDIPYKVVINEAVELTKTFGGVEGY 144 Query: 121 A 121 Sbjct: 145 K 145 >gi|71416373|ref|XP_810221.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874720|gb|EAN88370.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 238 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 24/227 (10%) Query: 225 VQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS---GAKVTALDVSKRRLEKLRC 281 D ++++ V+ VLD+CAA G + + +TA + + R +LR Sbjct: 1 PLDYASALVVEQLEVGAFDRVLDVCAASGRNSIGIAQFLSADGALTANEPNHERSARLRR 60 Query: 282 NLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSST-GTIRRHPDVLWT---RDT 334 N+ I + +A + ++ VLVDAPCS+ ++ + + Sbjct: 61 NIREYIPSNYVPVTITQRNAETWYAPSMYHRVLVDAPCSAERYLLQHNGGAPVSPKIWTE 120 Query: 335 DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLN 394 ++ + LLL+ + +PGG VV+S SL +++ VV+ LR + VE+ P Sbjct: 121 QTSLELSRRGCVLLLRALETCRPGGRVVYSTRSLSPLENDGVVEDALRRTRCQVEVHPTT 180 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + + PD + F + ++ Sbjct: 181 LRNMGEKTRYGHI-------VLPDTAGGFGPL-------FCCVIHKV 213 >gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa SC2] gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa SC2] Length = 149 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 11/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-------SQRDQILVRAIV 53 MK + AR ++ + + + +D+ ++A ++ + V V Sbjct: 1 MKRRL-ARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEENEAEVVIKNAEVLRAYVLEHV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 T ID +L L + R +Q+LR++V ++++ DV V+ A+E + Sbjct: 60 RGTWEHKEAIDGLLADYLKGWQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIELS 119 Query: 112 KRDKENRHFAKLVNSILRR 130 K K VN +L R Sbjct: 120 K-HFGTEESGKFVNGVLGR 137 >gi|118573083|sp|Q3KNT7|NSN5B_HUMAN RecName: Full=Putative NOL1/NOP2/Sun domain family member 5B; AltName: Full=Williams-Beuren syndrome chromosomal region 20B protein gi|76825358|gb|AAI07113.1| NSUN5B protein [Homo sapiens] Length = 163 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 20/168 (11%) Query: 285 RLHLYAEDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIRRH--PDVLWTRDTDDIV 338 + + ++ E D P VL+D CS +G R T + Sbjct: 7 WVGVSCCELAEEDFLAVSPLDPRYREVHYVLLDPSCSGSGMPSRQLEDPGAGTPSPVRLH 66 Query: 339 KSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 A FQ++ L ++F ++ +V+S CSL ++++E++V L+ +P L P A Sbjct: 67 ALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRLAPALPA 123 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 ++ E +R +P GFF + R+ P Sbjct: 124 RPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 162 >gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum JDM301] gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum JDM301] Length = 187 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K + LLD + IV Sbjct: 1 MA-RSTARKRALNTLYEADEKSQDILSLLDERIAHPGAQTPLPD---YAIEIVKGVAEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +ID LD + R + +LR++ +IL+ DV D +D A+ AK ++ Sbjct: 57 RQIDMTLDEHSTGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAKTLCDDD 116 Query: 119 HFA 121 A Sbjct: 117 SPA 119 >gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP 101886] gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP 101886] Length = 151 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 15/144 (10%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-----------SQRDQI 47 MK NAR + + + ++ + + + D Sbjct: 1 MKPAARRNARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDVE 60 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDL 106 R +++ + +D+ + L L +LR+S+ ++ DV V++ Sbjct: 61 YFRDLLSGVVLNYQELDSKMRPYLSRPLQDLDEMEHAILRLSMYELCKREDVPYKVVINE 120 Query: 107 AVEQAKRDKENRHFAKLVNSILRR 130 A+E AKR K VN +L + Sbjct: 121 AIELAKRF-GAEDSHKFVNGVLDK 143 >gi|282850877|ref|ZP_06260251.1| conserved domain protein [Lactobacillus gasseri 224-1] gi|282557829|gb|EFB63417.1| conserved domain protein [Lactobacillus gasseri 224-1] Length = 87 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 NAR V+ L V ++ L+ E L D+ L IV T+++ ++ Sbjct: 3 NARTVALETLIKVFNQKSYSNIALNNELVKH---ELKPADKALATRIVYGTIQYKIFLEY 59 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILY 95 L ++ + L L LL +S Q + Sbjct: 60 QLKPLIKTKLR--DKFLMPLLLMSAYQYFF 87 >gi|159478403|ref|XP_001697292.1| hypothetical protein CHLREDRAFT_176590 [Chlamydomonas reinhardtii] gi|158274450|gb|EDP00232.1| predicted protein [Chlamydomonas reinhardtii] Length = 237 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + AVL+D PCS+ G P ++ + + A +QR LL+ ++ + PGG ++ Sbjct: 117 DEGPEAAVLLDPPCSALGL---RPRLMHSWSLAQLRALAAYQRSLLVTAVAALAPGGTLL 173 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW-KSIDMAMALSPEGWI 413 + C++ Q++E V L ++L P + A + E W+ Sbjct: 174 YCTCTISPQENEANVAWALDRYAGALQLEPAAPLLGLPGLTGADPHTGERWL 225 >gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX] gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX] Length = 142 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 7/119 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR+ + +L + + ++ +++ + + + R Sbjct: 9 SRHKARVRAVEILYEAEVRGVPVSEVIERRRAQTEPPINE-----FTEQLATRVDEHRAR 63 Query: 63 IDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID +L+ + +L R + +LR+ V ++L+ D+ D + AV AK + Sbjct: 64 IDELLETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMAKELSTDES 122 >gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium LMG 3301] gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium LMG 3301] Length = 168 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 14/142 (9%) Query: 2 KSGMN-----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRA 51 M ARL + L + + ++ + + D RA Sbjct: 13 APRMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDGTQYLDADPQWFRA 72 Query: 52 IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAV 108 IV + ++D ++ L L R +L+ +LR ++ DV +V V Sbjct: 73 IVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQTRKDVPTAVIVSEYV 132 Query: 109 EQAKRDKENRHFAKLVNSILRR 130 + AK KLVN++L R Sbjct: 133 DIAKAFY-TEEEPKLVNAVLDR 153 >gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC 33638] gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC 33638] Length = 138 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDIAYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAADSHKFVNGV 126 Query: 128 LRRVSRE 134 L +V+ Sbjct: 127 LDKVAPM 133 >gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC 23445] gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC 23445] Length = 171 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL ++ L + + ++ + + D RAIV + Sbjct: 23 ARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13] gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653] gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653] Length = 171 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D RAIV + Sbjct: 23 ARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora aurantiaca ATCC 27029] gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5] gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora aurantiaca ATCC 27029] gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5] Length = 144 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L +V L Sbjct: 9 MPARRKARKRALDVLFEADLRDRPPVEVLAGYLERIEQPRPDH--LGYAVGLVEGVAAHL 66 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID + +L R + L R++V ++LY+D + D + AVE A++ Sbjct: 67 DRIDETIASYAEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 125 Query: 119 HFAKLVNSILRRVSRE 134 + +N IL R++ Sbjct: 126 DSPRFLNGILGRIAEY 141 >gi|145344415|ref|XP_001416728.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576954|gb|ABO95021.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 296 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 56/260 (21%), Positives = 94/260 (36%), Gaps = 29/260 (11%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IV 261 + + + G +Q ++ +P + +D CAAPG KT QL + Sbjct: 42 VFPAGTDLHAHKLVKTGAVVLQGRASCLPAVALAPERGWACIDGCAAPGNKTTQLAALVG 101 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDAFDYCPKKLF----DAVLVDAPC 316 V A D RRL++L+ N D P A+L+D C Sbjct: 102 REGGVYAFDADARRLKRLKENAATTGSQGIIRAKCQDFLTVDPGNTVYASVRALLLDPSC 161 Query: 317 SSTGTIRRHPDVLWT----------------RDTDDIVKSACFQRKLLLQGISFVKPGGI 360 S +GT D++ D + + K A FQ+ +L F + Sbjct: 162 SGSGTEVNRGDIMLRDALDEDDVEEIDAEADADEERVDKLAAFQKSVLKHAFCFPEVE-R 220 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 V +S CS+ ++++EEVV+ V+ + + W +A+ R Sbjct: 221 VSYSTCSVHEKENEEVVRDVMDVAVEHGFKLAHALPKWHRRGIAIDGLSTEDARCL---- 276 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + D + M+GFF R Sbjct: 277 IRADPIEDDMEGFFVAIFER 296 >gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624] gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624] Length = 187 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R + L + + T +D D + D A+++ + +D + Sbjct: 47 SREFALQALYQHLV-GRNATADIDAFTRD--LTGFHKADAAHYDALLHGCVNEAEALDRL 103 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + +L L + ++ + + + DV V++ +E AK Sbjct: 104 ILPLLDRKLAEISPIERAIMWMGAYEFQHCVDVPWRVVLNEYIELAKSFGGTDGHK 159 >gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM 30120] gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM 30120] Length = 138 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + + + +S D R +++ ++D ++ Sbjct: 11 ECAVQAIYSWQLSGNPIAEVEYEFIAE---QDMSDVDVNYFRELISGIANNATKLDQLMS 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRV++ ++ Y DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|326436918|gb|EGD82488.1| hypothetical protein PTSG_03137 [Salpingoeca sp. ATCC 50818] Length = 958 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 50/98 (51%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +D ++ D PC GT+R+ PD+ V Q ++ ++G++ ++ GG++ +S C Sbjct: 445 YDRIVCDVPCCGDGTLRKSPDMWRRWHPGFAVGLHTLQLQIAMRGLALLRVGGVMTYSTC 504 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMA 404 + + + E VV +++ VE+V ++ + + Sbjct: 505 TFNPIEDEAVVAQIITRCGGSVEVVDVSDMHPSLVRRP 542 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 73/233 (31%), Gaps = 42/233 (18%) Query: 248 LCAAPG--GKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK 305 C G K+ + A+ + +L+ L L + Sbjct: 453 PCCGDGTLRKSPDMWRRWHPGFAVGLHTLQLQIAMRGLALLRVGGVMTYST---CTFNPI 509 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 +AV+ G++ A + ++ ++G++ ++ GG++ +S Sbjct: 510 EDEAVVAQIITRCGGSVEVVDVSDMHPSLVRRPGIAHWTLQIAMRGLALLRVGGVMTYST 569 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSI-------------DMAMALSPEGW 412 C+ + + E VV +++ VE+V ++ + + +M + + Sbjct: 570 CTFNPIEDEAVVAQIITRCGGSVEVVDVSDMHPSLVRRPGIAHWTVFDDNMEEHATYDDC 629 Query: 413 IR-----------ITPDMLE-------------KIDGVSSGMDGFFAVALRRL 441 ++ P M ++ GFF LR++ Sbjct: 630 MKSDHLSPGAKRAFRPGMWPPKGAEDLGLERCMRLYPHDQDTGGFFVAVLRKV 682 >gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908] gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018] gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017] Length = 138 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + + + + + ++ N L + Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLEEKKIKN---NQLVFALSLFNGVLERI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 IDA+++ L R + +LR+ +I + + +++ +E K Sbjct: 58 NEIDALIEPHLKDWDFKRLGSMEKAILRLGAYEIGFTPTQNPIIINECIELGK 110 >gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida LFI1238] gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio salmonicida LFI1238] Length = 155 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 12/132 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50 + NAR + + + ++ + + + + D R Sbjct: 8 AARRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109 + + ++D + L L LLR+S+ +++ DV V++ A+E Sbjct: 68 DLFSGVALNHIKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFA 121 AK Sbjct: 128 LAKVFAAEDSHK 139 >gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium NOR5-3] gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium NOR5-3] Length = 150 Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L + + D F ++ D +A+++ + Sbjct: 13 RRKARHYALQALYQWHMAGARPSDIEAEFRTDYDFEVV---DLEYFQALIHGVPPLAQEL 69 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 D++L+ +L L + LLR+ ++ +DV V++ +V AK+ + Sbjct: 70 DSLLEPLLDRELRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALAKKFGAAESYK 128 >gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus CMCP6] gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus YJ016] gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus MO6-24/O] gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6] gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016] gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus MO6-24/O] Length = 155 Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + + R D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATIEAQFLAGEKYDEEEHRAAEPALAAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ + +D+ + + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLTGVVLSHTELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii SH145] gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii SH145] Length = 149 Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + + + + ++A + D ++ + Sbjct: 10 AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKV---DLSYYHELLTQVVANHE 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +DA+L VL L LR+ ++ +L++ V+D A+E AK Sbjct: 67 ALDALLIPVLDRELSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK-HFGGADS 125 Query: 121 AKLVNSILRR 130 K +N +L R Sbjct: 126 HKYINGVLDR 135 >gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13] gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13] Length = 140 Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + D R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLTEQDVKDVDIAYFRELLSGVAVNAGLLDGLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ + DV ++ A+E AK K VN + Sbjct: 68 PFLSRQLEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193] gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193] Length = 160 Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR-----LLSQRDQILVRAIVNV 55 MKS ARL + L + ++ ++ +++ D L R ++ Sbjct: 16 MKS--AARLYAVQALFQMEHSDLTFDKVIAEFENHRFGAVYEDGEMAEGDTGLFRKLLKD 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + F ID + D L + R +L+ L R + A+ + V++ V+ A+ Sbjct: 74 AVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQSNTPPKVVINEFVDIARA 133 Query: 114 DKENRHFAKLVNSILRRV 131 AK VN++L + Sbjct: 134 FFPEGKEAKFVNAVLDHM 151 >gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM 13855] gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8] gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM 13855] gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8] Length = 160 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 4/121 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S +AR L + L S RD + TL+ + Sbjct: 1 MSSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRD--FAEHLFRETLKTM 58 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 D +++ + + R + LLR++ ++L + +V VD A+E AKR R Sbjct: 59 EEADEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIEIAKRYSTPR 118 Query: 119 H 119 Sbjct: 119 S 119 >gi|281201563|gb|EFA75772.1| Putative nucleolar protein [Polysphondylium pallidum PN500] Length = 463 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 26/186 (13%) Query: 272 SKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 +KRR+ K + + L Y +L+D V+VDA CS ++R Sbjct: 288 NKRRVSKKKTSKVTYDLDGLYFCNTFYMRYSNAQLYDKVIVDAECSLDASVRHLLQYSKL 347 Query: 332 RD---TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 +++ + Q++L+ G + +K GG +V+S CS K +E+VV+ +L ++ Sbjct: 348 GRNFLPNELTELTDLQKRLIQTGFNLLKVGGSLVYSTCSFCKVQNEDVVKWLLDNN-ANA 406 Query: 389 ELVPLNSAYWKSIDMAMALSP-------------EGWIRITPDMLEKIDGVSSGMDGFFA 435 +L+P + + + R P +G G F Sbjct: 407 KLLPCFEEQQQEQQQDSNNNNNNDYKVPYSKGFIDNTYRFYP---------KNGTSGMFI 457 Query: 436 VALRRL 441 ++ Sbjct: 458 SKFTKI 463 >gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus parasanguinis F0405] gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus parasanguinis F0405] Length = 143 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S + R + L + + D + D + +V + Sbjct: 9 SRRDLRERAFQSLMALEYDGDIVEACRFAYLHDKDLAEDKEVDLPAFLMNLVTGVYQSKD 68 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D + L ++ R + +LR+ + +I D V+ AVE AK + Sbjct: 69 QLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEFDTPQIVAVNEAVELAKAF-SDET 127 Query: 120 FAKLVNSILRRV 131 ++ VN +L + Sbjct: 128 SSRFVNGVLSQF 139 >gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum JDM1] gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum subsp. plantarum ST-III] gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum JDM1] gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum subsp. plantarum ST-III] Length = 139 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + L + L + + +V Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEEADAVEIP--AYLSTLVTGVRE 58 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 +DA + L SL R + +LR++ ++ + DV V+ A+E K Sbjct: 59 HQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAIELTKAFS 118 Query: 116 ENRHFA 121 ++R Sbjct: 119 DDRSRK 124 >gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72] gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72] Length = 155 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 44/123 (35%), Gaps = 4/123 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ + + S + + ++ + D+ L ++ TL + + Sbjct: 12 ELALQGVYQWLLSGNSPQVV--EAHVEAEAADFDKVDRELFVMLLRGTLDNVGALQDEFS 69 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + + + +L + ++ + ++ V++ A+E AK + VN + Sbjct: 70 PFIHRPIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGTDG-HRFVNGV 128 Query: 128 LRR 130 L + Sbjct: 129 LDK 131 >gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B] gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B] Length = 145 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L + + +V Sbjct: 1 MPARTKARKRALDVLFEADLRAADPLEILADHTARADTPVPE-----YAVRLVEGVAAHR 55 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +++ + +L R + +LR+++ ++L+ +V D V+ AV+ A +D Sbjct: 56 AEIDRIIEQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVKLA-QDLSTA 114 Query: 119 HFAKLVNSI 127 A VN + Sbjct: 115 ESAPFVNGV 123 >gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter antarcticus 238] gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter antarcticus 238] Length = 146 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 9/141 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ + L++ D L R +V Sbjct: 1 MKS--ASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDELAEGDVNLFRMLVET 58 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + +ID + D L L R +L+ L R + +++ D + V+ AK Sbjct: 59 AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELIGRDTPPKVAISEYVDVAKA 118 Query: 114 DKENRHFAKLVNSILRRVSRE 134 + K VN++L ++R+ Sbjct: 119 FFDGGEEPKFVNAVLDHMARQ 139 >gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis subsp. lactis AD011] gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis subsp. lactis AD011] gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp. lactis BB-12] gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp. lactis V9] Length = 154 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K LLD + IV Sbjct: 1 MA-RSTARRRALNTLYEADEKGQDFLSLLDERIAQPGAQTPLPE---YAIEIVRGVDEHR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID+ L+ + R + +LR++ +ILY DV D +D A+ +K ++ Sbjct: 57 RDIDSQLNTHSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSKTLSDDA 116 Query: 119 HFA 121 + Sbjct: 117 APS 119 >gi|307103626|gb|EFN51884.1| hypothetical protein CHLNCDRAFT_54732 [Chlorella variabilis] Length = 498 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 13/151 (8%) Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 + L++A + GT+R+ PD+ T+ Q ++ L Sbjct: 181 DVEPHHWVLDMCAAPGSKTFQLLEALHAGDGTMRKAPDIWRRWGTNSGNNLHTTQLRITL 240 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM---- 405 + ++ GG +V+S C+ + + E VV +VLR + ELV + + Sbjct: 241 RACQLLRVGGRLVYSTCTFNPVEDEAVVAEVLRRTKGAFELVDGSDHLPGLRRVPGLQRW 300 Query: 406 ---------ALSPEGWIRITPDMLEKIDGVS 427 S +G + P + + + Sbjct: 301 RDGLVPCLYRFSQDGLPALLPHVTRQRFHPT 331 >gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC 23330] Length = 151 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L V + + F+ D L + + Sbjct: 13 SPRRRAREFAVQALYQVAMNQSIAAEVASHMREHGDFKN---ADNELFTELFFGAHQNQR 69 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + +L ++ ++ + V++ AVE K Sbjct: 70 EYMQHIRPHLDRDENAVNPIERAILLLATHELAAMPQTPYPVVINEAVELTKTFGGTDSH 129 Query: 121 A 121 Sbjct: 130 K 130 >gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1 str. 9-941] gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis biovar Abortus 2308] gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19] gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis ATCC 23457] gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str. 2308 A] gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv. 3 str. Ether] gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9 str. C68] gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9] gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038] gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5 str. B3196] gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1 str. 9-941] gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus 2308] gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19] gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC 23457] gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str. 2308 A] gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038] gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4 str. 292] gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2 str. 86/8/59] gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6 str. 870] gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3 str. Tulya] gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9] gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5 str. B3196] gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28] gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis M5-90] Length = 171 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D RAIV + Sbjct: 23 ARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv. 1 str. Rev.1] gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str. 16M] gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M] gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 171 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + + ++ + + D RAIV + Sbjct: 23 ARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDGTQYLDADPQWFRAIVAGVVEDQL 82 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D ++ L L R +L+ +LR ++ DV +V V+ AK Sbjct: 83 KLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEYVDIAKAFY-TE 141 Query: 119 HFAKLVNSILRR 130 KLVN++L R Sbjct: 142 DEPKLVNAVLDR 153 >gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114] gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11] gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri] gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114] gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11] Length = 155 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 12/132 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50 + NAR + + + ++ + + + + D R Sbjct: 8 AARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109 + + ++D + L L LLR+S+ +++ DV V++ A+E Sbjct: 68 DLFSGVALNHMKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFA 121 AK Sbjct: 128 LAKVFAAEDSHK 139 >gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens ISM] gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens ISM] Length = 160 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 8/136 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVNV 55 K ARL + L + +S+ + D ++ Sbjct: 14 KMRSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGAEFDDGIDMQEGDAEHFADVIEG 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 +++ +ID + D L + R +L+ L R + A+++ V+ V+ AK Sbjct: 74 AVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELMQEGTPPKVVIVEYVDIAKS 133 Query: 114 DKENRHFAKLVNSILR 129 K VN++L Sbjct: 134 FFPEGREPKFVNAVLD 149 >gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032] gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032] Length = 144 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L +V L Sbjct: 9 MPARRKARKRALDVLFEADLRDRPPVEVLAGYIERIEKPRPDH--LGYAVGLVEGVAGHL 66 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + L R++V ++LY+D + D + AVE A++ Sbjct: 67 DRIDELISSYAEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 125 Query: 119 HFAKLVNSILRRVSRE 134 + +N +L R++ Sbjct: 126 DSPRFLNGLLGRIAEY 141 >gi|317495194|ref|ZP_07953564.1| transcription antitermination factor NusB [Gemella moribillum M424] gi|316914616|gb|EFV36092.1| transcription antitermination factor NusB [Gemella moribillum M424] Length = 131 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 8/130 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MKS R +L + LD + V + + L Sbjct: 1 MKSRHELREAVFKILFQIE------NTELD-YKELLELEQEEIANSSYVNNTLTEIIDKL 53 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L L R +Q+LR+S +IL+ D+ ++ AVE +K+ E Sbjct: 54 EEIDNIISNNLKDWKLERLSKMDRQILRISAYEILHSDIPYKVSINEAVELSKKYSEKDE 113 Query: 120 FAKLVNSILR 129 K +N +L+ Sbjct: 114 SYKFINGVLK 123 >gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2150] gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales bacterium HTCC2150] Length = 155 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNV 55 MKS AR + L + + ++ + + D ++ Sbjct: 11 MKS--AARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGDEMQEGDPATFGLLMRG 68 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + +ID + D L L R +L+ L R + A++ + V++ VE A+ Sbjct: 69 AVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEGETPPKVVINEFVEVARA 128 Query: 114 DKENRHFAKLVNSILRRV 131 K VN +L + Sbjct: 129 FFPETKEPKFVNGVLDHM 146 >gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae T7901] gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter turnerae T7901] Length = 147 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 10/136 (7%) Query: 1 MK----SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK + AR + + L + + D+ +S+ D + + Sbjct: 1 MKVTAATRSRARHFAMQAIYQWQMNGNPLHVIEAEFHTDN---DMSKVDTEYFHELFHGV 57 Query: 57 LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114 +DA L S L + LLR + ++ +DV V++ AV AK+ Sbjct: 58 AADKSALDACFLPHLKSLPLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAKKF 117 Query: 115 KENRHFAKLVNSILRR 130 K VN +L + Sbjct: 118 -GAEDSHKFVNGVLDK 132 >gi|170074302|ref|XP_001870551.1| NOL1/NOP2/Sun domain family [Culex quinquefasciatus] gi|167871085|gb|EDS34468.1| NOL1/NOP2/Sun domain family [Culex quinquefasciatus] Length = 450 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 12/172 (6%) Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRLEKL-- 279 ++ D ++ +P VLD CAAPGGK + + DV + R+ ++ Sbjct: 262 FLLDGASILPALALDVQPGDRVLDACAAPGGKSLLLLQTLRPGTLVCNDVQESRVNRIRK 321 Query: 280 ------RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWT 331 + I DA + ++D +LVD PC++ + ++ + Sbjct: 322 LMGSYLYDFSENWKQKRCFITHGDARNLTEYDMYDRILVDVPCTTDRHSVMENDNNIFKS 381 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ Q LL + ++PGG +V+S CSL ++ VV L + Sbjct: 382 SRVKERLRLPELQAGLLANCLRLLRPGGSLVYSTCSLSPVQNDGVVHMALSN 433 >gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca DW4/3-1] gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1] gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca DW4/3-1] gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1] Length = 141 Score = 80.3 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 5/134 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISL--TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + L + + L S + +V Sbjct: 1 MGARRTGRERALQALYQLEMTPSTSVHEALASAWAASSEEGKPDPEAVRFAQELVEGVQT 60 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 +D +++ + L R + +LR+ V ++ Y D+ ++ AVE K + Sbjct: 61 RRAEVDQLIEKHSHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVELGK-NFG 119 Query: 117 NRHFAKLVNSILRR 130 + VN +L R Sbjct: 120 TEESSAFVNGLLDR 133 >gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14] gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14] gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 156 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 13/141 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + F + D R Sbjct: 8 AARRNARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDVSYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 + + +D+ + L L LLR+++ ++ DV V++ A+E Sbjct: 68 DLFTGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRR 130 AK K VN +L + Sbjct: 128 LAK-LFGAEDSHKFVNGVLDK 147 >gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168] gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168] Length = 138 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 4/126 (3%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDL-EYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R+++ L +S+ LL + R ++ T+ + ID++ Sbjct: 7 RILAFQALFSWDVGGMSVDELLAFPWMEADVLAKTDEGSLSFARLLIAGTIEHIDEIDSL 66 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L R +LR+SV +LY D+ V+D A++ AK F + + Sbjct: 67 IKAHLDSWDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAIDIAKEFGSGDSF-RFI 125 Query: 125 NSILRR 130 N++L Sbjct: 126 NAVLDN 131 >gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC BAA-1116] gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3] gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116] gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3] Length = 155 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 20/145 (13%), Positives = 50/145 (34%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50 + NAR + + + ++ + + + + D R Sbjct: 8 AARRNARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 +++ + +D+ + + + LLR+++ ++ DV V++ A+E Sbjct: 68 ELLSGVVLSHSELDSKIRPYVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans ATCC 33394] gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans ATCC 33394] Length = 148 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L +I + + F+ D L A+ R Sbjct: 10 SPRRRAREFAVQALYQTAINKIPAEEVAKNTREHTDFKN---ADDELFTAVFFGAHRQQR 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + L + +L ++V ++ + + V++ A+E K Sbjct: 67 EYMQQIRPHLDRDENLISPVERAVLLLAVHELAAMPETPYPVVINEAIELTKTFGGTDSH 126 Query: 121 A 121 Sbjct: 127 K 127 >gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp. SKA34] gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp. SKA34] Length = 156 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 13/141 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + F + D R Sbjct: 8 AARRNARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDVSYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 + + +D+ + L L LLR+++ ++ DV V++ A+E Sbjct: 68 DLFTGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRR 130 AK K +N +L + Sbjct: 128 LAK-LFGAEDSHKFINGVLDK 147 >gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae D-4968] gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae NSW150] gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae D-4968] gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella longbeachae NSW150] Length = 147 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 51/140 (36%), Gaps = 5/140 (3%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ L + + ++E + + D +++ + ++ Sbjct: 11 KARKLALQALYQWLMAGT---EVCEIEAQFRVINKMDKVDVDYFCRLLHGVPEHVASLET 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L + +LR+ ++LY ++ V+D A+ K ++ + V Sbjct: 68 SITPFLDREISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTKEF-GSQDGYRYV 126 Query: 125 NSILRRVSREKIELLQRIAG 144 N +L ++R+ + + Sbjct: 127 NGVLNNLARQVRSIEISHSN 146 >gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11] gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11] Length = 163 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 7/137 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR-----LLSQRDQILVRAIVNVT 56 K +RL + L + ++L ++ +++ D + R +V Sbjct: 18 KMRSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGAVYEDGEMAEGDSKVFRKLVEDA 77 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + RID + D L + R +L+ L R + A++ V++ V+ A+ Sbjct: 78 VSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELTESKTPPKVVINEFVDIARAF 137 Query: 115 KENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 138 FPEGKEPKFVNAVLDHM 154 >gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium tuberculosis CDC1551] gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis CDC1551] Length = 290 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + IS ++D + + R A+ I Sbjct: 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRVSV ++L+ DV + VVD AV+ AK Sbjct: 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128 Query: 122 KLVNSILRRVS 132 VN +L +V Sbjct: 129 GFVNGVLGQVM 139 >gi|224058099|ref|XP_002191888.1| PREDICTED: NOL1/NOP2/Sun domain family, member 4 [Taeniopygia guttata] Length = 410 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 24/235 (10%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLR 280 +++ DA++ +PV + VLDLCAAPGGKT L+ +G A DVS R ++L Sbjct: 184 YYLMDAASLLPVLALSVQPDDFVLDLCAAPGGKTLALLQTGFCGHLAANDVSVSRTKRLY 243 Query: 281 CNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332 L + + +D F VLVD PC++ + ++ R Sbjct: 244 HILHSYVPKEVRDTVSVTSYDGRDWDQVKGGTFHKVLVDVPCTTDRHSAMEEENNIFHKR 303 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPIPV 388 T + Q +LL+ GI +PGG VV+S CSL +E VV++ L I V Sbjct: 304 RTKERQMLPMLQLQLLMAGILAARPGGAVVYSTCSLSPLQNECVVERALDVAGAQFNISV 363 Query: 389 ELVPLNSAYWKSIDMAMALSP--EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L+ D S G + + P + + LRRL Sbjct: 364 HVEDLSHFRTLFQDTFSFFSDCRLGEL-VLPHLTANFGP-------MYFCKLRRL 410 >gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus pseudintermedius HKU10-03] gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus pseudintermedius HKU10-03] gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus pseudintermedius ED99] Length = 130 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + L + K LT + + + L D ++ +V+ Sbjct: 2 SRKQARSQAFQTLFQLEMKNTELTIDEAISFIKEDYPDL---DFDFIKWLVSGVKDHQHV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ ++ + D + +++ AVE AK+ ++ H+ Sbjct: 59 LDETISPHLNGWTIARLLKTDRIILRMATFEMNHSDTPEKVIINEAVELAKQFSDDDHYK 118 >gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380] gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380] Length = 138 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E + + + D R +++ +DA++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVELQFLSEQDVKDVDISYFRELLSGVAVNAASLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAADSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|325475118|gb|EGC78304.1| NOL1/NOP2/sun family protein [Treponema denticola F0402] Length = 263 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 22/236 (9%) Query: 216 PGFAEGVW--WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKV 266 ++E + + D ++ + L S LD+CAAPGGK + A Sbjct: 38 EAYSENLIQNYYLDYASIQAARAMPVLEEGSCLDMCAAPGGKTLVLLSRIKENAEIQANE 97 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324 + D R + L +L + + DA +D +L+DAPCSS + + Sbjct: 98 LSADRRNRLIRVLDEHLSEENRKRIKVSSYDASRMPRYGQELYDRILLDAPCSSERHVLQ 157 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + L I + Q LL +KP G +V+S C+L ++++ +++K+++ Sbjct: 158 NEKYLKQWTEARIKNLSQRQWALLSAAFLLLKPKGFLVYSTCALADEENDFLIEKLIKKY 217 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L ++ + R PD + + + +++ Sbjct: 218 KEKVRLEDKLDSFSPILPEKTRY----GFRFLPDKADGAGPI-------YFSLIQK 262 >gi|253314894|ref|ZP_04838107.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 129 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + + L D + +V+ P Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFINDDNPDL---DFEFIHWLVSGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ +IL+ D V++ AVE K+ ++ H+ Sbjct: 59 LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|156743196|ref|YP_001433325.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941] gi|189035899|sp|A7NP12|NUSB_ROSCS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156234524|gb|ABU59307.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941] Length = 142 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 9/140 (6%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S R ++ +L + ++ + L + +R +V Sbjct: 1 MASLRHRVRAIALQILFELDATDHPPDQVVGRRLEEEQ---LPPEGERFLRRLVFGAWEH 57 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQIL---YLDVADYAVVDLAVEQAKRDK 115 +D +++ + + + +LR+++ + L A+++ AVE AK+ Sbjct: 58 AAHLDRIIEEAAPNWPVSQMPGVDKAILRIALFEALIDKEEKTPLKAIINEAVELAKQY- 116 Query: 116 ENRHFAKLVNSILRRVSREK 135 + + ++ VN +L V Sbjct: 117 GSDNSSRFVNGVLGTVVSRY 136 >gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum DSM 15641] gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum DSM 15641] Length = 162 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 9/141 (6%) Query: 1 MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M AR ++ +L + ++ L ++V Sbjct: 1 MAKRHERTLARRMAVQVLYEGEITDTLASEIVLRPDAVPDGGALP----AYAVSLVEGVC 56 Query: 58 RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 ID + + S+ R + ++R++V ++ + DV ++ AVE AK Sbjct: 57 AHRVAIDNKIAAASENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINEAVELAKEFG 116 Query: 116 ENRHFAKLVNSILRRVSREKI 136 A+ VN IL R++R+ Sbjct: 117 GADDSARFVNGILGRIARQDN 137 >gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC 39149] gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC 39149] Length = 136 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L +V L Sbjct: 1 MPARRKARKRALDVLFEADLRDRPPVEVLAGYVERIEKPHPEH--LGYAVGLVEGVAAHL 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID ++ +L R + L R++V ++LY+D + D + AVE A++ Sbjct: 59 GRIDELIASYAEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAVELARQM-STD 117 Query: 119 HFAKLVNSILRRVSRE 134 + +N +L R++ Sbjct: 118 DSPRFLNGVLGRIAEY 133 >gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 139 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + L + L + + +V Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEEADAVEIP--AYLSTLVTGVRE 58 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 +DA + L SL R + +LR++ ++ + DV V+ A+E K Sbjct: 59 HQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAIELTKAFS 118 Query: 116 ENRHFA 121 ++R Sbjct: 119 DDRSRK 124 >gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis ATCC 367] gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367] Length = 142 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 7/124 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + +L + L D +L+ D + +VN L Sbjct: 1 MTLTRHQIRERAFQMLFALNANPEADHDALYQRVLTDDPNQLVPVPD--YLATLVNGVLA 58 Query: 59 FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 +DA +D L + L R + +LR++ +I + DV + V+ A+E AK Sbjct: 59 HQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEALELAKNFS 118 Query: 116 ENRH 119 ++R Sbjct: 119 DDRS 122 >gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium intracellulare ATCC 13950] Length = 169 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + LL + +S ++D+ G + Q A+ Sbjct: 6 KGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLAEANPEIAPLQPYTAAVARGVGEHAA 65 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D ++ L +L R + +LRV+V ++LY DV + VD AV+ AK Sbjct: 66 HVDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKE-LSTDD 124 Query: 120 FAKLVNSILRRVS 132 VN +L V Sbjct: 125 SPGFVNGVLGHVM 137 >gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147] gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147] Length = 145 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L V +I + + +R D L AI Sbjct: 4 SPRRRAREFAVQALYQVALNKIPAPEVAQHIRESNDYR---HADGELFTAIFFGAHNNQR 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ++ +L + +L V+V ++ + + +++ A+E K Sbjct: 61 EYMQIIRPLLDRDENLINPIERSVLLVAVHELKAMPETPYPVIINEAIEVTKTFGGTDS- 119 Query: 121 AKLVNSILRR 130 K +N IL + Sbjct: 120 HKFINGILDK 129 >gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Rv] gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium tuberculosis F11] gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 02_1987] gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium tuberculosis GM 1503] gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 1435] gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis C] gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis str. Haarlem] gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 605] gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis 02_1987] gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis GM 1503] gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 210] gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN 4207] gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN R506] gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu001] gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu002] gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu004] gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium tuberculosis KZN V2475] gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium Tuberculosis gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium Tuberculosis gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis C] gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis str. Haarlem] gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium tuberculosis H37Ra] gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis F11] gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 1435] gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 605] gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis 02_1987] gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium tuberculosis GM 1503] gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium tuberculosis T85] gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium tuberculosis 94_M4241A] gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu001] gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu002] gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis SUMu004] gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis CDC1551A] gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis W-148] gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis KZN 4207] Length = 156 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + IS ++D + + R A+ I Sbjct: 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRVSV ++L+ DV + VVD AV+ AK Sbjct: 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128 Query: 122 KLVNSILRRVS 132 VN +L +V Sbjct: 129 GFVNGVLGQVM 139 >gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046] gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046] Length = 152 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + + + + ++A + D ++ + Sbjct: 10 AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRVENAMHKV---DLSYYHELLTQVVANHE 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +DA+L VL + LR+ ++ +L++ V+D A+E AK Sbjct: 67 ALDALLIPVLDREVSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK-HFGGADS 125 Query: 121 AKLVNSILRR 130 K +N +L R Sbjct: 126 HKYINGVLDR 135 >gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy] gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy] Length = 152 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRD---QILVRAIVNVT 56 MK+ AR ++ L + + L L + + + Q + +I +V T Sbjct: 1 MKTRHKARELALQTLYAMDFNKE-LDVLHIPAIFSGNTEEEHDQLEEEVKIYGMYLVRGT 59 Query: 57 LRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQ 110 L L ID ++ L + R + +LR+SV + + ++ + ++D AV+ Sbjct: 60 LENLFEIDELISKYSLNRPIERIDIVDRNILRMSVFCLRFGNIHPHIIIDEAVKL 114 >gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY] gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY] Length = 177 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + +D+ D + D A+++ + +D + Sbjct: 38 AREFALQALYQHLVGGNDA-TAIDVFTRD--LSGFHKADAAHYDALLHGCITTAQYMDEL 94 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 + L + ++ + V + + DV V++ +E AK Sbjct: 95 IAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHK 150 >gi|82751129|ref|YP_416870.1| transcription antitermination protein NusB [Staphylococcus aureus RF122] gi|119390829|sp|Q2YYB7|NUSB_STAAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82656660|emb|CAI81086.1| probable N utilization substance protein B [Staphylococcus aureus RF122] Length = 129 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V+ P Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDGNPDL---DFEFIHWLVSGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ +IL+ D V++ AVE K+ ++ H+ Sbjct: 59 LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1] gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1] Length = 146 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+++ + + + + D+ + L ++ +VN T L Sbjct: 3 MDLRHKARILAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKLFYSVLVNGTYDNL 62 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 ID ++ + L L R +LR+SV + + LDV ++D A+ AK+ N Sbjct: 63 ESIDKLISGISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIAKKY-GN 121 Query: 118 RHFAKLVNSILRRVSREK 135 ++ K VN IL + ++ Sbjct: 122 KNSDKFVNGILDALLKDM 139 >gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis L2-32] gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis L2-32] Length = 147 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + + L K L+ L + A L IV + Sbjct: 2 ARSTARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPD----YAIEIVRGVAEHIA 57 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 IDA+LD + R + +LR++ +I++ DV + +D A+ AK ++ Sbjct: 58 AIDAMLDEHSTGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLAKTLCDDDS 117 Query: 120 FA 121 A Sbjct: 118 PA 119 >gi|312438007|gb|ADQ77078.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus TCH60] Length = 132 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 5/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V+ P Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ +IL+ D V++ AVE K+ ++ H+ Sbjct: 59 LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRRVSR 133 +N +L + Sbjct: 119 -FINGVLSNIKN 129 >gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC 35580] gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC 35580] Length = 147 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 3/138 (2%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R+++ L +S LL + + + L D + + + + + ID ++ Sbjct: 9 RILAFQALYAWDAGSLSPDDLLPFPWVERTGKELHDEDFLFSQLLFLGAVEHIDEIDGLI 68 Query: 68 DFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L + R K + +LR+ +L+ D V++ AV A R K VN Sbjct: 69 AKNLENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAVTIA-RIYGTDDSFKFVN 127 Query: 126 SILRRVSREKIELLQRIA 143 ++L + RE ++ L Sbjct: 128 AVLDSIKRECLDCLHEKD 145 >gi|118378686|ref|XP_001022517.1| conserved hypothetical protein [Tetrahymena thermophila] gi|89304284|gb|EAS02272.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 477 Score = 79.9 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 81/266 (30%), Gaps = 47/266 (17%) Query: 213 VSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTAL 269 ++P + + S + + ++D C+APG KT Q I KV A Sbjct: 212 SAMPVYLLFKNIIDSQSNESLSEASRPSKSFDIIDCCSAPGNKTMQAAEYIKGRGKVFAF 271 Query: 270 DVSKRRLEKLRCNLDRLHLYAED-IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDV 328 + +++R E L+ + + + D + + A S +GT + Sbjct: 272 EKNQQRFELLKERVQKYGFEQVISCLNEDFLSVDVTQYPNVEYFVADPSCSGTGMLNHIY 331 Query: 329 LW----------TRDTDDIVKSACFQRKLLLQGISFVKPGGIVV---------------- 362 ++ +++ + +K +V Sbjct: 332 FDEDQIQLEEENLQNQQTKKSFMERTQQIFESYDNKMKQ--RIVGLGQFQLKILNKLATF 389 Query: 363 -------FSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRI 415 +S CS+ +Q++E+VV K L+ + + + IR Sbjct: 390 PSIKAFSYSTCSIHQQENEDVVFKFLQENKSFQLVEACPQWKTRGFKTKNLPDGNKCIRF 449 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P DGFF ++ Sbjct: 450 NP--------FEDKSDGFFVALFQKK 467 >gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45] gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45] Length = 163 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 10/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS------QRDQILVRAIVN 54 MKS +RL + L + S+ + + + D L I + Sbjct: 18 MKS--ASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGVEMLDGDVGLFGRITS 75 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + + +ID + D L + R +L+ L R + A+ + D V+ V+ A+ Sbjct: 76 AAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVDSDTPPRVVISEYVDVAR 135 Query: 113 RDKENRHFAKLVNSILRRV 131 + VN++L + Sbjct: 136 AFFPEGREPQFVNAVLDHM 154 >gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus haemolyticus JCSC1435] gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 128 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V P Sbjct: 2 SRKESRMQAFQTLFQLEMKDTELTINEAINFIKDDEPEL---DFDFIHWLVTGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L SL R + + +LR++ ++L+ D +++ AVE AK+ ++ H+ Sbjct: 59 LDDTIKPHLKDWSLQRLLKTDRIILRMATFELLHSDTPPKVIINEAVELAKQFSDDEHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|325194265|emb|CCA28236.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 173 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 23/152 (15%) Query: 300 DYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT----------RDTDDIVKSACFQRKLLL 349 L+D VLVDA C+ G+IR + + + + Q L+ Sbjct: 32 WAFDSMLYDKVLVDAECTHDGSIRHLQKLKTLEAWTNYMEKYLNATQLERIRDLQHHLIR 91 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP 409 G +K GGI+++S CSL + +E++V+ L +P +L ++ D Sbjct: 92 NGFRLLKVGGIMIYSTCSLSIRQNEDIVRDFLSETPN-AKLFAMHPHDSLPCDPGSL--- 147 Query: 410 EGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 EG +R +P G F ++++ Sbjct: 148 EGTLRFSP---------RRNTSGLFIARIQKV 170 >gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC 700338] gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC 700338] Length = 142 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 4/124 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60 S + R + L + L D D + +V Sbjct: 7 NSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDKTIEEDDTIDVPVFLLNLVKGVQDLK 66 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID ++ L SL R + + LLR+ + +I Y + V+ +E AK+ ++ Sbjct: 67 FEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVNEIIEIAKKYSDD 126 Query: 118 RHFA 121 Sbjct: 127 TSAK 130 >gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly] gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly] Length = 146 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+++ + + + + D+ + L ++ +VN T L Sbjct: 3 MDLRHKARVLAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDLKLFYSVLVNGTYDNL 62 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 ID ++ + L L R +LR+SV + + LDV ++D A+ AK+ N Sbjct: 63 ESIDKLISGISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIAKKY-GN 121 Query: 118 RHFAKLVNSILRRVSREK 135 ++ K VN IL + ++ Sbjct: 122 KNSDKFVNGILDALLKDM 139 >gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10] gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10] Length = 160 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 9/129 (6%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 + L + + + ++ + D+ ++V + +D Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPEFVEADEDFFESLVAGVVERQADVDP 83 Query: 66 VLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAK 122 +D +L L R +++ +LRV ++LY DV V+D +E A E K Sbjct: 84 AMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAE-PK 142 Query: 123 LVNSILRRV 131 +N+ R Sbjct: 143 FINAAFDRC 151 >gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42] gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42] Length = 177 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + +D+ D + D A+++ + +D + Sbjct: 38 AREFALQALYQHLVGGNDA-TAIDVFTRD--LSGFHKADAAHYDALLHGCITTAQYMDEL 94 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 + L + ++ + V + + DV V++ +E AK Sbjct: 95 IAPQLDRKMSEISPIEHAVMWIGVYEFQHCQDVPWRVVINECIELAKEFGGTDGHK 150 >gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP 102972] gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP 102972] gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218] Length = 156 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50 + NAR + + + ++ + + + + D R Sbjct: 8 AARRNARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ + +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLAGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri 93-146] gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella ictaluri 93-146] Length = 139 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY + + + D R +++ +D ++ Sbjct: 11 ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDVNYFRELLSGVASNAEYLDGLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LRVS+ ++ DV ++ +E AK K VN + Sbjct: 68 PVLSRQLDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAK-IFGAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L +V+ + Sbjct: 127 LDKVAPQ 133 >gi|15924514|ref|NP_372048.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus Mu50] gi|15927105|ref|NP_374638.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus N315] gi|21283206|ref|NP_646294.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MW2] gi|49486361|ref|YP_043582.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MSSA476] gi|57650481|ref|YP_186410.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus COL] gi|88195331|ref|YP_500135.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268009|ref|YP_001246952.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus JH9] gi|150394076|ref|YP_001316751.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus JH1] gi|151221641|ref|YP_001332463.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. Newman] gi|156979843|ref|YP_001442102.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus Mu3] gi|221140055|ref|ZP_03564548.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732178|ref|ZP_04866343.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733226|ref|ZP_04867391.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus TCH130] gi|255006311|ref|ZP_05144912.2| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425650|ref|ZP_05602074.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 55/2053] gi|257428311|ref|ZP_05604709.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 65-1322] gi|257430948|ref|ZP_05607328.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 68-397] gi|257433637|ref|ZP_05609995.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus E1410] gi|257436550|ref|ZP_05612594.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M876] gi|257793601|ref|ZP_05642580.1| transcription antitermination factor NusB [Staphylococcus aureus A9781] gi|258411099|ref|ZP_05681379.1| transcription antitermination protein NusB [Staphylococcus aureus A9763] gi|258420097|ref|ZP_05683052.1| transcription antitermination factor NusB [Staphylococcus aureus A9719] gi|258423178|ref|ZP_05686071.1| transcription antitermination factor NusB [Staphylococcus aureus A9635] gi|258437357|ref|ZP_05689341.1| transcription antitermination protein NusB [Staphylococcus aureus A9299] gi|258443563|ref|ZP_05691902.1| transcription antitermination protein NusB [Staphylococcus aureus A8115] gi|258446770|ref|ZP_05694924.1| transcription antitermination protein NusB [Staphylococcus aureus A6300] gi|258448684|ref|ZP_05696796.1| transcription antitermination protein NusB [Staphylococcus aureus A6224] gi|258451182|ref|ZP_05699217.1| transcription antitermination protein NusB [Staphylococcus aureus A5948] gi|258453501|ref|ZP_05701479.1| transcription antitermination protein NusB [Staphylococcus aureus A5937] gi|262051191|ref|ZP_06023415.1| transcription antitermination protein NusB [Staphylococcus aureus 930918-3] gi|269203154|ref|YP_003282423.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus ED98] gi|282893026|ref|ZP_06301260.1| transcription antitermination factor NusB [Staphylococcus aureus A8117] gi|282911163|ref|ZP_06318965.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914332|ref|ZP_06322118.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M899] gi|282916795|ref|ZP_06324553.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus D139] gi|282919301|ref|ZP_06327036.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C427] gi|282924626|ref|ZP_06332294.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C101] gi|282924773|ref|ZP_06332440.1| transcription antitermination factor NusB [Staphylococcus aureus A9765] gi|282928996|ref|ZP_06336583.1| transcription antitermination factor NusB [Staphylococcus aureus A10102] gi|283770601|ref|ZP_06343493.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus H19] gi|284024584|ref|ZP_06378982.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 132] gi|293503407|ref|ZP_06667254.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 58-424] gi|293510423|ref|ZP_06669129.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M809] gi|293530963|ref|ZP_06671645.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M1015] gi|295406647|ref|ZP_06816452.1| transcription antitermination factor NusB [Staphylococcus aureus A8819] gi|296275119|ref|ZP_06857626.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MR1] gi|297207756|ref|ZP_06924191.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245770|ref|ZP_06929635.1| transcription antitermination factor NusB [Staphylococcus aureus A8796] gi|300911837|ref|ZP_07129280.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus TCH70] gi|304380887|ref|ZP_07363547.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54037923|sp|P65578|NUSB_STAAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54037924|sp|P65579|NUSB_STAAW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041674|sp|P65577|NUSB_STAAM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56749194|sp|Q6G941|NUSB_STAAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71153022|sp|Q5HFP7|NUSB_STAAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390828|sp|Q2FY45|NUSB_STAA8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215722|sp|A7X2Q3|NUSB_STAA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|172048899|sp|A6QH69|NUSB_STAAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035909|sp|A6U1Z6|NUSB_STAA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035910|sp|A5IT53|NUSB_STAA9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13701323|dbj|BAB42617.1| SA1355 [Staphylococcus aureus subsp. aureus N315] gi|14247295|dbj|BAB57686.1| N utilization substance protein B homolog [Staphylococcus aureus subsp. aureus Mu50] gi|21204646|dbj|BAB95342.1| MW1477 [Staphylococcus aureus subsp. aureus MW2] gi|49244804|emb|CAG43254.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus MSSA476] gi|57284667|gb|AAW36761.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus COL] gi|87202889|gb|ABD30699.1| N utilization substance protein B, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741078|gb|ABQ49376.1| NusB antitermination factor [Staphylococcus aureus subsp. aureus JH9] gi|149946528|gb|ABR52464.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus JH1] gi|150374441|dbj|BAF67701.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus str. Newman] gi|156721978|dbj|BAF78395.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253723967|gb|EES92696.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728766|gb|EES97495.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus TCH130] gi|257271344|gb|EEV03490.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 55/2053] gi|257275152|gb|EEV06639.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 65-1322] gi|257278378|gb|EEV09014.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus 68-397] gi|257281730|gb|EEV11867.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus E1410] gi|257283901|gb|EEV14024.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M876] gi|257787573|gb|EEV25913.1| transcription antitermination factor NusB [Staphylococcus aureus A9781] gi|257840249|gb|EEV64713.1| transcription antitermination protein NusB [Staphylococcus aureus A9763] gi|257843808|gb|EEV68202.1| transcription antitermination factor NusB [Staphylococcus aureus A9719] gi|257846628|gb|EEV70649.1| transcription antitermination factor NusB [Staphylococcus aureus A9635] gi|257848562|gb|EEV72550.1| transcription antitermination protein NusB [Staphylococcus aureus A9299] gi|257850969|gb|EEV74912.1| transcription antitermination protein NusB [Staphylococcus aureus A8115] gi|257854345|gb|EEV77294.1| transcription antitermination protein NusB [Staphylococcus aureus A6300] gi|257857962|gb|EEV80851.1| transcription antitermination protein NusB [Staphylococcus aureus A6224] gi|257861237|gb|EEV84050.1| transcription antitermination protein NusB [Staphylococcus aureus A5948] gi|257864232|gb|EEV86982.1| transcription antitermination protein NusB [Staphylococcus aureus A5937] gi|259160828|gb|EEW45848.1| transcription antitermination protein NusB [Staphylococcus aureus 930918-3] gi|262075444|gb|ACY11417.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus ED98] gi|269941015|emb|CBI49399.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus TW20] gi|282313461|gb|EFB43856.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C101] gi|282317111|gb|EFB47485.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C427] gi|282319282|gb|EFB49634.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus D139] gi|282321513|gb|EFB51838.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M899] gi|282324858|gb|EFB55168.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WBG10049] gi|282589403|gb|EFB94494.1| transcription antitermination factor NusB [Staphylococcus aureus A10102] gi|282592780|gb|EFB97786.1| transcription antitermination factor NusB [Staphylococcus aureus A9765] gi|282764344|gb|EFC04470.1| transcription antitermination factor NusB [Staphylococcus aureus A8117] gi|283460748|gb|EFC07838.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus H19] gi|283470803|emb|CAQ50014.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ST398] gi|285817207|gb|ADC37694.1| Transcription termination protein NusB [Staphylococcus aureus 04-02981] gi|290920231|gb|EFD97297.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus M1015] gi|291095073|gb|EFE25338.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 58-424] gi|291466787|gb|EFF09307.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus M809] gi|294968394|gb|EFG44418.1| transcription antitermination factor NusB [Staphylococcus aureus A8819] gi|296887773|gb|EFH26671.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177421|gb|EFH36673.1| transcription antitermination factor NusB [Staphylococcus aureus A8796] gi|298694807|gb|ADI98029.1| N utilization substance protein B [Staphylococcus aureus subsp. aureus ED133] gi|300886083|gb|EFK81285.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus TCH70] gi|302333201|gb|ADL23394.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus JKD6159] gi|302751356|gb|ADL65533.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340614|gb|EFM06548.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829914|emb|CBX34756.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129802|gb|EFT85792.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus CGS03] gi|320140590|gb|EFW32444.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MRSA131] gi|323440422|gb|EGA98134.1| transcription antitermination protein NusB [Staphylococcus aureus O11] gi|323443196|gb|EGB00814.1| transcription antitermination protein NusB [Staphylococcus aureus O46] gi|329314202|gb|AEB88615.1| N utilization substance protein B -like protein [Staphylococcus aureus subsp. aureus T0131] gi|329727098|gb|EGG63554.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 21172] gi|329728323|gb|EGG64760.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 21189] gi|329730817|gb|EGG67195.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus 21193] Length = 129 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V+ P Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ +IL+ D V++ AVE K+ ++ H+ Sbjct: 59 LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis str. MC2 155] gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis str. MC2 155] Length = 160 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 3/131 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + ++ + D + + + I Sbjct: 10 RHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLNPYTVLVARGVTEHAAHI 69 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRV+V ++L+ DV + VD AVE AK Sbjct: 70 DDLISAHLQGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKE-LSTDESP 128 Query: 122 KLVNSILRRVS 132 VN +L +V Sbjct: 129 GFVNGVLGQVM 139 >gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii DSM 4541] gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii DSM 4541] Length = 138 Score = 79.6 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + + + +S D R +++ ++D ++ Sbjct: 11 ECAVQAIYSWQLSGNPIAEVEYEFLAE---QDMSDVDVNYFRELISGIASNATKLDQLMS 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRVS+ ++ Y DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34] gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus UCN34] gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 142 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 4/124 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60 S + R + L + L D D + +V F Sbjct: 7 NSRRDLRERAFQALFSLEFGGEYLAAAQFAYTYDKTIEEDDTIDVPVFLLNLVKGVQDFQ 66 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID ++ L SL R + + LLR+ + +I Y + V+ +E AK+ ++ Sbjct: 67 SEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVNEIIEIAKKYSDD 126 Query: 118 RHFA 121 Sbjct: 127 TSAK 130 >gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora setae KM-6054] Length = 145 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVT 56 M + AR + +L + +S +L + + +V Sbjct: 1 MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGIPQVAEYTMQLVEGY 60 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 + ID ++ ++ R + + ++R+ ++++ D D V+D AVE AK Sbjct: 61 AQHARTIDDLISTYAVGWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAVEIAKEF 120 Query: 115 KENRHFA 121 + A Sbjct: 121 STDESPA 127 >gi|302766075|ref|XP_002966458.1| hypothetical protein SELMODRAFT_227613 [Selaginella moellendorffii] gi|300165878|gb|EFJ32485.1| hypothetical protein SELMODRAFT_227613 [Selaginella moellendorffii] Length = 423 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 23/143 (16%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---------ACFQRKLLLQGISFVKP 357 +D VLVDA C+ G+++ + Q +LL G +K Sbjct: 286 YDKVLVDAECTHDGSLKHICKFEQWGWETFEKRFFNSERISTITNLQLRLLSNGFRLLKQ 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CS +E V+++ L + P ++ W + +R P Sbjct: 346 GGTLVYSTCSFTYDQNEGVLKQFLAAHPDAEVREIKSAKSWPCTMTGL------CLRFDP 399 Query: 418 DMLEKIDGVSSGMDGFFAVALRR 440 + S +G F + + Sbjct: 400 --------LVSNTNGQFVAKITK 414 >gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum DSM 20093] gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum DSM 20093] Length = 149 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 5/117 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + L K + LL + + IV +D + Sbjct: 6 ARKRALNTLYEADEKDQDIKSLLQERIVEPGAQTPLPE---YAIEIVEGVADNRKDLDRI 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 ++ + R + +LR++ +I++ D + D +D A+ AK ++ Sbjct: 63 INEHSTGWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEALNLAKTLSDDESLG 119 >gi|148698677|gb|EDL30624.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus] Length = 415 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 29/283 (10%) Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQ 235 K + E+ ++ + P G +++ DA++ +PV Sbjct: 139 HQKLEPESGLSPTPSLDCSPNLRCFTFSRGDVSRFPPARLGSLGLMDYYLMDAASLLPVL 198 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDI 293 G + +VLDLCAAPGGKT L+ +G + A D+S R +L+ L Sbjct: 199 ALGLQHGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRLQKVLHSYVPQDIRE 258 Query: 294 IEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACF 343 + + D VLVD PC++ ++ + Sbjct: 259 GNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRSRKKERQMLPML 318 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWK 399 Q +LL G+ KPGG VV+S CSL +E VVQ + I V++ L+ Sbjct: 319 QVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKL 378 Query: 400 SID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +D S + + P+++ + L RL Sbjct: 379 FMDTFCFFPSCQVGELVIPNLMVNFGP-------MYFCKLHRL 414 >gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355] Length = 139 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L ++S + D+EY A + + D R +++ +D ++ Sbjct: 11 ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAGPQIRPQ 137 >gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter phenanthrenivorans Sphe3] gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter phenanthrenivorans Sphe3] Length = 136 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ +S +L + ++++ I+ + Sbjct: 1 MSARGKARNRALDILFEAEQRSVSAFDVL-RARREKTDQIINP----YTLEIIEGVVSQQ 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID L+ SL R + +LR+ ++LY DV D V AV AK Sbjct: 56 TAIDEFLETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVALAKT-LSTD 114 Query: 119 HFAKLVNSILRRVSR 133 + +N +L R+ + Sbjct: 115 ESPQFINGLLGRLQQ 129 >gi|326799647|ref|YP_004317466.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21] gi|326550411|gb|ADZ78796.1| Fmu (Sun) domain protein [Sphingobacterium sp. 21] Length = 390 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 85/281 (30%), Gaps = 40/281 (14%) Query: 170 DACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI--RLKELPESIVSLPGFAEGV--WWV 225 + + L ++ E+ K R E+ L + E + V Sbjct: 137 KSLFRQPKLFLRLRPGAESIVLKCLERNQINYERIGRSCLALENGTKLDQYEELRGTYEV 196 Query: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGK--TAQLIVSGAKVTALDVSKRRL----EKL 279 QD S+ F D CAA GGK + DV L E+ Sbjct: 197 QDRSSQQTGDYFEAKAGEKWWDACAASGGKSLLLMQTYPRVNLLVSDVRSSILRNLDERF 256 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + + + D FD +++DAPCS +GT R P+++ + Sbjct: 257 EKAAIKDYRRKIIDLTKDPSIILGNDTFDGIILDAPCSGSGTWGRTPEMMQQFSEGKLCY 316 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 QR++L + +K +++ CS+ ++EE V + +E L Y Sbjct: 317 FVDLQRRILQNVVQHLKVDKPLIYITCSVYGAENEEQV-AFAEKLGLRLERATLLKGYEN 375 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D F L + Sbjct: 376 RADT-----------------------------MFIARLVK 387 >gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae subsp. damselae CIP 102761] Length = 152 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 45/144 (31%), Gaps = 15/144 (10%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQI 47 MK NAR + + + + + F D Sbjct: 1 MKPAARRNARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDVN 60 Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDL 106 R + + +D+ + L L LLR+++ ++ DV V++ Sbjct: 61 YFRDLFTGVVLNHQDLDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINE 120 Query: 107 AVEQAKRDKENRHFAKLVNSILRR 130 A+E AK K VN +L + Sbjct: 121 AIELAK-LFGAEDSHKFVNGVLDK 143 >gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium 104] gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium subsp. avium ATCC 25291] gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10] gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104] Length = 156 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 7/138 (5%) Query: 1 MKS----GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M AR + LL + +S ++D+ G + Q A+ Sbjct: 1 MSKPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVRTGLADTNPEVAPLQPYTAAVARGV 60 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 ID ++ L +L R + +LRV+V ++LY DV + VD AV+ AK Sbjct: 61 GDHAAHIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKE- 119 Query: 115 KENRHFAKLVNSILRRVS 132 VN +L +V Sbjct: 120 LSTDDSPGFVNGVLGQVM 137 >gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus weihenstephanensis KBAB4] gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048] gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603] gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4] gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603] gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048] Length = 130 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 11/133 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + ++ + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVDN 53 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 IDA + L L R + +LRV+V ++ Y+ ++ ++ A+E AK + Sbjct: 54 KEEIDAAIRQNLKKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTF-GD 112 Query: 118 RHFAKLVNSILRR 130 + +N +L Sbjct: 113 EESRRFINGVLSN 125 >gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032] gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032] Length = 140 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 4/125 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M +R ++ L + S + +SQ+ R ++ R Sbjct: 1 MGLRRKSRELALQFLFSHDFQERSCAPDDVARDLDMFCQLFDVSQKALPYGRELILGICR 60 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKE 116 IDA+L + + R + +LR++V ++ + D ++ A+E AKR Sbjct: 61 HREEIDALLATHSHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQVAINEALEIAKRYSI 120 Query: 117 NRHFA 121 + Sbjct: 121 GESVS 125 >gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae bacterium Broad-1] gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae bacterium Broad-1] Length = 137 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 6/121 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + LL + +S LLD + + IV + Sbjct: 6 TARTKARKRALDLLFAAEARGLSAGDLLDQQIREGEVPNNP-----FTVKIVRGVVAEAE 60 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 RIDA++ +L R + +LR+ V ++L DVA + A + Sbjct: 61 RIDALISAFAKDWTLARMPAVDRNVLRIGVWELLDGDVASEVAISEATALVTELSTDDSP 120 Query: 121 A 121 + Sbjct: 121 S 121 >gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus ATCC 19977] gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium abscessus] Length = 173 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + ++ + D +A + ++ + I Sbjct: 28 RRKARKRAVDLLFEAEAREMTAAGVADERRALAASKPDIDPLNPYTVSVAHGVTEHAAHI 87 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRV+V ++L+ DV + VD AVE AK+ + A Sbjct: 88 DELISSHLQGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAKQLSTDESPA 147 >gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens TC1] gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens TC1] Length = 136 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 7/123 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L ++ +S D L IV + Sbjct: 1 MSARGKARSRALEVLFEAEQRSVS---AFDAMTARREKTDLVIN--PYTVEIVEGVVSMQ 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID L +L R + +LR+ ++LY D V D V AV AK + Sbjct: 56 ATIDEFLQTYAQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAVALAKTMSTDE 115 Query: 119 HFA 121 A Sbjct: 116 SPA 118 >gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1] gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1] Length = 155 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 13/133 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----------ILVRA 51 ++ ARL + L + +L LLD + R + D Sbjct: 8 QARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLGREVDDEDHEGEVYADAEVEFFDD 67 Query: 52 IVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAV 108 IV ID +L L L R ++ Q+LR +++ DV + + V Sbjct: 68 IVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAITEYV 127 Query: 109 EQAKRDKENRHFA 121 + AK ++R Sbjct: 128 DVAKAFFDDREAK 140 >gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1] gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1] Length = 139 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L ++S + D+EY A + + D R +++ +D ++ Sbjct: 11 ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAGPQIRPN 137 >gi|294886901|ref|XP_002771910.1| ribosomal RNA small subunit methyltransferase B, putative [Perkinsus marinus ATCC 50983] gi|239875710|gb|EER03726.1| ribosomal RNA small subunit methyltransferase B, putative [Perkinsus marinus ATCC 50983] Length = 402 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 70/400 (17%), Positives = 119/400 (29%), Gaps = 71/400 (17%) Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLA 167 A R ++ + I R + + + F E E +L Sbjct: 5 HPAASGIVGYRFPPEIQQFLDDNHIPLWIYDPSRQPIVRTVRQRFDEASIEKELLEEILQ 64 Query: 168 ISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQ 226 D + + ++ W L A + L + G + Sbjct: 65 ARDLPAAESIQEEPLRVTPIEWLEPLTAARFGPSPKFYSIPTATQMSRLNLYKGGHLFGL 124 Query: 227 DASASIPVQ----LFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLR 280 D S++ V G +VLDLC APG K + G++V +DVS+ RL R Sbjct: 125 DVSSASAVYALLGESGPEPGSAVLDLCCAPGTKLLMLSELCPGSRVAGIDVSRDRLMVCR 184 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKL---------------------------------- 306 L + + ++ D C + + Sbjct: 185 SLLTKYGAHNVELYHGDGRYVCSRPMERLTVAKRKSRGRKRQRRGSPEDPPPSSTTLEAE 244 Query: 307 -FDAVLVDAPCSSTGTIRRHPDV--------------LWTRDTDDIVKSA--------CF 343 +D VL DA C+ G+++ + Sbjct: 245 SWDLVLCDAECTHDGSVKHMLKHLEASSRDSSGVVGFWQQQSERSHPMPWLDKLGELESL 304 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 QR L+ +KPGG +V+S CS+ ++ E +V+ +L L PL K Sbjct: 305 QRALITAAFDALKPGGCMVYSTCSMARRQDENIVEYLLE-HRDAAALCPLPFDLAKMPCR 363 Query: 404 AMALSPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRR 440 A + G R P + + G F +R+ Sbjct: 364 AAMMDNTGAACACRFDPADADVARVDAG---GLFIARIRK 400 >gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098] gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098] Length = 157 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 47/139 (33%), Gaps = 11/139 (7%) Query: 1 MKSGMNA-----RLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRD--QILVRAI 52 M G +A R + +L + SL + + + + + Sbjct: 1 MSKGKSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQSPDHQESEEGELPSGFSWDL 60 Query: 53 VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110 V +D + + + R LLR+++ ++LY DV ++ A+E Sbjct: 61 VQGVWSRRDELDKTISRFSRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVAINEALEL 120 Query: 111 AKRDKENRHFAKLVNSILR 129 ++ + VN IL Sbjct: 121 TRQF-GEDNATSFVNGILD 138 >gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2] gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2] Length = 154 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 12/141 (8%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAI 52 M + ARL + L + L + + + I Sbjct: 1 MSNADGRSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVEGQLYKPAELAFFKDI 60 Query: 53 VNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ L ID +D L L R L+ +LR ++ DV + V+ Sbjct: 61 LSGVLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKEYVD 120 Query: 110 QAKRDKENRHFAKLVNSILRR 130 A R + +VN++L Sbjct: 121 VAGAFF-EREESGMVNAVLDH 140 >gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36] gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36] Length = 159 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + S + + + D ++ Sbjct: 15 MKS--ASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGASYDGQEMIDGDIRHFADLLET 72 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + D L ++ R +L+ L R + A++ + V++ V+ A+ Sbjct: 73 AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELRAQETPPRVVINEYVDVARA 132 Query: 114 DKENRHFAKLVNSILRRV 131 E K VN++L + Sbjct: 133 FFEGGDEPKFVNAVLDHM 150 >gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37] gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37] Length = 168 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 9/139 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-------DSAFRLLSQRDQILVRAIVN 54 K +RL + L + + I + + D + D L ++ Sbjct: 21 KMRSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGAVDDDDGTEMLDGDVSLFSHVIE 80 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 L + ++D + D L + R L+ L R + A+++ D V+ V+ A Sbjct: 81 EALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGAELVATDTPPKVVIVEYVDVAV 140 Query: 113 RDKENRHFAKLVNSILRRV 131 + AK VN++L + Sbjct: 141 AFYPDGKEAKFVNAVLDHM 159 >gi|119627322|gb|EAX06917.1| hCG2031650, isoform CRA_f [Homo sapiens] gi|194379028|dbj|BAG58065.1| unnamed protein product [Homo sapiens] Length = 335 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 75 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 134 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 135 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 194 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 195 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 254 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 255 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 314 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 315 VIPNLMANFGP-------MYFCKMRRLT 335 >gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus 129PT] gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT] Length = 144 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + ++L + + D R + T+ + Sbjct: 9 SPRRRARECAVQTLYSWAISK-NAPEEIELNFIVDQDNEMKGVDMPYFRKLFRQTVDHVE 67 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D+++ L +LR++V ++ + LDV V++ A+E AK Sbjct: 68 IVDSIMAPYLDRDNVELDPIECAILRLAVYELKFELDVPYKVVINEAIEVAK-VFGAEES 126 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 127 HKYINGVLDK 136 >gi|255642235|gb|ACU21382.1| unknown [Glycine max] Length = 392 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 21/145 (14%) Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTR--------DTDDIVKSACFQRKLLLQGISFVKP 357 +D VLVDA C+ G+++ W D + Q LL G + Sbjct: 259 YDKVLVDAECTHDGSVKHIQKFEDWGWGTLQRRVLDAERTDDLHTLQLNLLTNGFRLLNV 318 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CSL +E+VV++ L+ + ++ W + + Sbjct: 319 GGSLVYSTCSLTIAQNEDVVEQFLKENETAELTEIDAASDWPCKGGRIPKT--------- 369 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLI 442 + D ++S G F +++ Sbjct: 370 ---WRFDPLTSQTSGLFVAKFTKVV 391 >gi|19074454|ref|NP_585960.1| NOP2-LIKE NUCLEOLAR PROTEIN [Encephalitozoon cuniculi GB-M1] gi|19069096|emb|CAD25564.1| NOP2-LIKE NUCLEOLAR PROTEIN [Encephalitozoon cuniculi GB-M1] Length = 364 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 19/252 (7%) Query: 193 LNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 L+ G+ ++IV G+ G + +Q+ S+ +P + V+D C+AP Sbjct: 128 LDYEKSCVDGVYKILDSKNIVFSEGYKNGKFVIQNISSCLPAHILDPEEGSRVIDTCSAP 187 Query: 253 GGKTA---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 G KT+ ++ + K+ A + SK R E LR L +L + +++E D + P+ Sbjct: 188 GNKTSQLAMIMRNTGKIYAFERSKNRAETLRAQLFKLGVSNTEVVEDDFMNANPEDFEGI 247 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 + S +G+ + + D + I FQ +++ + F +P +V+S CS Sbjct: 248 RYILCDPSCSGSGMH---LGYKMDKERIEGLKSFQIEIVRHALRF-RPE-KLVYSVCSDH 302 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++ EEVV+++LRSS +E + + + S + + R SG Sbjct: 303 REEGEEVVEEILRSSEYELENISMFWSSAHSSGFSFSQDVVRCRR-----------DESG 351 Query: 430 MDGFFAVALRRL 441 GFF R Sbjct: 352 AIGFFIALFVRK 363 >gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. equi 4047] gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. equi 4047] Length = 150 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 9/126 (7%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLR 58 S + R + L + L D + + +VN + Sbjct: 8 SRRDLRERAFQALFAMEMGGDFLPA--SQFAYDYDKEAADDKQPSELPVFLLNLVNGVMD 65 Query: 59 FLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115 +D V+ L S+ R + +LR+ + ++ L+ + D ++ +E AK+ Sbjct: 66 HKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYS 125 Query: 116 ENRHFA 121 ++ Sbjct: 126 DDTSAK 131 >gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp. NAS-14.1] gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp. NAS-14.1] Length = 159 Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + S + + + D ++ Sbjct: 15 MKS--ASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGATYDGQEMIDGDIRHFADLLET 72 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + D L ++ R +L+ L R + A++ + V++ V+ A+ Sbjct: 73 AVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELRAQETPPRVVINEYVDVARA 132 Query: 114 DKENRHFAKLVNSILRRV 131 E K VN++L + Sbjct: 133 FFEGGDEPKFVNAVLDHM 150 >gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis RM3268] gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis RM3268] Length = 342 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 5/121 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + ARL + LL D + R + A++ L Sbjct: 1 MATRHQARLAAISLLYSRDMNGGGEDFA-DEYLEEKRIRN---EQRNWTLALLRGASENL 56 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +DA++D L L + +LR+ ++ + D V++ A+ AK + Sbjct: 57 AAVDALIDENLKEFKLAEISALERAILRLGAYELRFTDTDAGIVINEAINSAKELGISPR 116 Query: 120 F 120 F Sbjct: 117 F 117 >gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica CNB-440] gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica CNB-440] Length = 136 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L +V L Sbjct: 1 MPARRKARKRALDVLFEADLRGRPPVEVLAGYVERIEKPRPEH--LGYAVGLVEGVAARL 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 R+D ++ +L R + L R++V ++LY+D + D + AVE A++ Sbjct: 59 DRVDELIASYAEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 117 Query: 119 HFAKLVNSILRRVSRE 134 + +N +L R++ Sbjct: 118 DSPRFLNGLLGRIAEY 133 >gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum PYR-GCK] gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1] gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK] gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1] Length = 164 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 56/153 (36%), Gaps = 10/153 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLRF 59 AR + LL + I+ + + +A D + Sbjct: 10 RHQARKRAVDLLFEAEARGITAAEVAE---ARNALADNGADDIAPLNPYTVTVARGVTDH 66 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID ++ L +L R + +LRV+V ++L+ DV + VD AVE AK+ Sbjct: 67 AAHIDDLISAHLQGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAVDEAVELAKQ-LST 125 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISIIPE 150 VN +L +V ++ A + P+ Sbjct: 126 DDSPGFVNGVLGQVMLVTPQIRAAAAAVQASPD 158 >gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont] Length = 139 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L ++S + D+EY A + + D R ++ +D ++ Sbjct: 11 ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDISYFRELLAGVATNSAFLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + + Sbjct: 127 LDKAAPQIRPN 137 >gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative [Roseobacter litoralis Och 149] gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative [Roseobacter litoralis Och 149] Length = 160 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + ++ + + + D L ++ Sbjct: 16 MKS--AARLYAVQALFQMEHSGQTIEIVRREFLEHRFGETYDGQEMLDGDVDLFDTVIEG 73 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + F ID + D L L R +L+ L R + A++ D V+ V+ A+ Sbjct: 74 AVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAELNGKDTPPKVVISEYVDVARA 133 Query: 114 DKENRHFAKLVNSILRRV 131 E+ KLVN +L + Sbjct: 134 FFEDGKEPKLVNGVLDHM 151 >gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans 568] gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568] Length = 138 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + + D + R +++ +D+++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDIVYFRELLSGVAVNAGLLDSLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+++ ++ + DV ++ A+E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1] gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1] Length = 142 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S R ++ +L + S ++ + L + +R +V Sbjct: 1 MASLRRRVRAIALQILFELDATDHSPDQVVARRLEEER---LPPEGERFLRRLVFGAWEH 57 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD---VADYAVVDLAVEQAKRDK 115 +D +++ + + + +LR+++ + L + A+++ AVE AK+ Sbjct: 58 ASYLDRIIEETAPNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINEAVELAKQY- 116 Query: 116 ENRHFAKLVNSILRRVSREK 135 + + ++ VN +L V Sbjct: 117 GSDNSSRFVNGVLGTVVSRY 136 >gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis MIT 98-5491] gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis MIT 98-5491] gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis MIT 98-5491] Length = 184 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 5/141 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + + R V LL + + + + + N + L Sbjct: 1 MATRSHVREVVVQLLYAY---GSGNDAIFKFADEIFGEHKIKNKQKDFANLLFNGVIENL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D + L + + +LR+ V +I + ++ ++ A+E AK N Sbjct: 58 ESLDLRIAHQLESWDFTKIGDMEKAILRLGVYEIAFNNLDKAIAINEALELAKTF-GNEA 116 Query: 120 FAKLVNSILRRVSREKIELLQ 140 AK +N +L +++ + Sbjct: 117 SAKFINGVLDNIAKNLQIPIH 137 >gi|302800612|ref|XP_002982063.1| hypothetical protein SELMODRAFT_228812 [Selaginella moellendorffii] gi|300150079|gb|EFJ16731.1| hypothetical protein SELMODRAFT_228812 [Selaginella moellendorffii] Length = 423 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 23/147 (15%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---------ACFQRKLLLQGISFVKP 357 +D VLVDA C+ G+++ + Q +LL G +K Sbjct: 286 YDKVLVDAECTHDGSLKHICKFEQWGWETFEKRFFNSERISTITNLQLRLLSNGFRLLKQ 345 Query: 358 GGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 GG +V+S CS +E V+++ L + P ++ W + +R P Sbjct: 346 GGTLVYSTCSFTYDQNEGVLKQFLAAHPDAEVREIKSAKSWPCTMTGL------CLRFDP 399 Query: 418 DMLEKIDGVSSGMDGFFAVALRRLIQP 444 + S +G F + + P Sbjct: 400 --------LVSNTNGQFVAKITKERMP 418 >gi|309807733|ref|ZP_07701667.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners LactinV 01V1-a] gi|308168993|gb|EFO71077.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners LactinV 01V1-a] Length = 160 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 10/154 (6%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL 96 LS D+ L IV T+++ ++ L ++ + L L LL +S Q +L Sbjct: 2 EKSQLSPIDKALTTQIVYGTVQYKLYLEYQLKSLVKTKLKED--YLWPLLLMSAYQYFFL 59 Query: 97 D-VADYAVVDLAVEQAKRD-KENRHFAKLVNSILRR------VSREKIELLQRIAGISII 148 D + ++VD A + AK + +LVN ILR + E+ + ++ ++ Sbjct: 60 DKIPTASIVDEANKLAKSYSPKGSQSYRLVNGILRSLVRRGEILPEEKDAVKYMSIKYSY 119 Query: 149 PEWFKERLENFYGKERVLAISDACISPLYIDLTV 182 P+W + + +GK + ++I A P + + Sbjct: 120 PQWLVKYCLDHFGKAKTISILQAGNMPSVNSIRI 153 >gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49] Length = 143 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNVTLRFL 60 R + L + + L++ ++ D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEDADKVAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|21312358|ref|NP_082418.1| putative methyltransferase NSUN4 [Mus musculus] gi|81904498|sp|Q9CZ57|NSUN4_MOUSE RecName: Full=Putative methyltransferase NSUN4; AltName: Full=NOL1/NOP2/Sun domain family member 4; AltName: Full=Sperm head and tail associated protein gi|12850082|dbj|BAB28584.1| unnamed protein product [Mus musculus] gi|19354059|gb|AAH24628.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus] gi|123253902|emb|CAM22671.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus] Length = 381 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 29/283 (10%) Query: 181 TVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQ 235 K + E+ ++ + P G +++ DA++ +PV Sbjct: 105 HQKLEPESGLSPTPSLDCSPNLRCFTFSRGDVSRFPPARLGSLGLMDYYLMDAASLLPVL 164 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDI 293 G + +VLDLCAAPGGKT L+ +G + A D+S R +L+ L Sbjct: 165 ALGLQHGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRLQKVLHSYVPQDIRE 224 Query: 294 IEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACF 343 + + D VLVD PC++ ++ + Sbjct: 225 GNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRSRKKERQMLPML 284 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWK 399 Q +LL G+ KPGG VV+S CSL +E VVQ + I V++ L+ Sbjct: 285 QVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKL 344 Query: 400 SID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +D S + + P+++ + L RL Sbjct: 345 FMDTFCFFPSCQVGELVIPNLMVNFGP-------MYFCKLHRL 380 >gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus thermophilus LMG 18311] gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus thermophilus CNRZ1066] gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus thermophilus LMD-9] gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG 18311] gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus CNRZ1066] gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9] gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus thermophilus ND03] Length = 144 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 5/133 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S + R + L + +L D ++ D + ++V LP Sbjct: 8 SRRDLRERAFQTLFALEFGGEALDQAYFAYTYDKPIDEETEVDLPSFLLSLVTGVREELP 67 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D+ ++ L SL R + + LLR+ + +I + + ++ +E AK+ ++ Sbjct: 68 QLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEETPGRVAINEIIEIAKKY-SDK 126 Query: 119 HFAKLVNSILRRV 131 AK +N +L + Sbjct: 127 TSAKFINGVLSQF 139 >gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103] gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103] Length = 139 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L ++S + D+EY A + + D R +++ +D ++ Sbjct: 11 ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRVS+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAGPQIRPQ 137 >gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 142 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M R + +L + + L+ + + D+ ++ ++ +R Sbjct: 1 MHKRRKTRELCMKILYAYRFQNNEYDIIEFLNKFKELNPDENFKEIDEEYLKKLLTGVIR 60 Query: 59 FLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 ID +++ L R +L+R+++ ++L+ ++ +D AV+ + Sbjct: 61 NQQLIDNLIEKYSKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVDLS-SIFG 119 Query: 117 NRHFAKLVNSILRR 130 VN IL Sbjct: 120 VEKAPSFVNGILGS 133 >gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002] gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002] Length = 148 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 42/123 (34%), Gaps = 4/123 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ AR + + L++ ++ + + + D+ L R ++ L+ Sbjct: 1 MKTSRRRAREFAVQGIYEWELNPDRPASLIEKHLRENDYFV--KADEALFRTLLFGVLKD 58 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENR 118 + +D + +L ++ ++ + + +++ A+E K Sbjct: 59 AAELSPKIDRYYERPADEVSPVERAVLLMAALELTQHPETPYPVIINEAIEITKTFGGTD 118 Query: 119 HFA 121 Sbjct: 119 GHK 121 >gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS] gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS] gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS] gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS] gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS] gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS] Length = 162 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 3/131 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + ++ + + + + I Sbjct: 10 RHQARKRAVDLLFEAEARGLTAAEVATSRNKLAGTQPDVTALNPYTVTVARGVTDHRDHI 69 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRV+V ++L+ DV + VD AVE AK+ Sbjct: 70 DDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQ-LSTDDSP 128 Query: 122 KLVNSILRRVS 132 VN +L +V Sbjct: 129 GFVNGVLGQVM 139 >gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium acetobutylicum ATCC 824] gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum ATCC 824] gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium acetobutylicum EA 2018] Length = 135 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R V+ LL + + S++ ++ ++ L D + I+ + Sbjct: 2 NRKKSREVAMKLLFEISINKNSISDTIEHYKENNEIENL---DFEYIERILRGIDENMEY 58 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID+ ++ + R +LR++ +I + D+ + AVE AK E F Sbjct: 59 IDSKIEESSKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELAKSYAEENSF 118 Query: 121 AKLVNSILRR 130 + VN ++ Sbjct: 119 S-FVNGVIGN 127 >gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202] gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202] gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60] Length = 139 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY + + + D R +++ +D ++ Sbjct: 11 ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDVNYFRELLSGVASNADYLDGLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LRVS+ ++ DV ++ +E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L +V+ + Sbjct: 127 LDKVAPQ 133 >gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus 12B01] gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222] gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium SWAT-3] gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus LGP32] gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus 12B01] gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222] gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium SWAT-3] gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32] Length = 155 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL-----------LSQRDQILVR 50 + NAR + + + ++ + + + + + D R Sbjct: 8 AARRNARQFALQAIYSWQITKENIATVEEQFLSGGKYDEEEHHAAEPALAMPETDVAYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLTGVALSHMELDSKLRPFVSRPMQDLDLMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160] Length = 143 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 14/133 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQF-SDE 127 Query: 119 HFAKLVNSILRRV 131 +K +N IL + Sbjct: 128 KSSKFINGILSKF 140 >gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405] gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678] gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1] gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058] Length = 143 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 14/133 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQF-SDE 127 Query: 119 HFAKLVNSILRRV 131 +K +N IL + Sbjct: 128 KSSKFINGILSKF 140 >gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis Et1/99] gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99] Length = 139 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D R +V +D ++ Sbjct: 11 ECAVQALYSWQISK---NDIADVEYQFLAEQDVKDVDITYFRELVGGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + + Sbjct: 127 LDKAAPQIRPN 137 >gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus hydrogenoformans Z-2901] gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus hydrogenoformans Z-2901] Length = 144 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 5/141 (3%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQ-RDQILVRAIVNVTLRFL 60 + AR ++ L + +L L L A + + R +V + Sbjct: 2 NRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFSRELVRGVIEKK 61 Query: 61 PRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 R+D ++ + R + LLR+++ ++LY D+ +D AVE AK Sbjct: 62 ERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELAK-VYGEE 120 Query: 119 HFAKLVNSILRRVSREKIELL 139 K +N IL V+ E Sbjct: 121 ESPKFINGILGYVAEHIDEFW 141 >gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c] gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c] Length = 135 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R + +L + S L++ S + +V L Sbjct: 1 MSARSKSRKRALDILYEADLRSTSP---LEILAARSVQNDPPVNE--YTSGLVRDVTEHL 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID + +L R + +LR++V ++++ DV D +D AVE AK +R Sbjct: 56 GRIDGFIGEHAEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVELAKSVSTDR 115 Query: 119 HFA 121 A Sbjct: 116 SPA 118 >gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646] gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646] Length = 154 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 7/139 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR +L + ++ + + + + + VN L ID + Sbjct: 20 AREWCFKILFAIDAGGNTIDEAMKITVNKPLNEDI----REFMLKEVNGVLEKKECIDEI 75 Query: 67 LDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124 +D + L R + + ++R+++ +I + D+ ++ AVE AK+ + K V Sbjct: 76 IDEYCVDWELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVEIAKKY-GDEKSPKFV 134 Query: 125 NSILRRVSREKIELLQRIA 143 N +L ++R++ +L R + Sbjct: 135 NGVLGAIARDREKLRHRFS 153 >gi|87161392|ref|YP_494169.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509753|ref|YP_001575412.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848555|ref|ZP_06789301.1| transcription antitermination factor NusB [Staphylococcus aureus A9754] gi|119390827|sp|Q2FGK9|NUSB_STAA3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035911|sp|A8Z464|NUSB_STAAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|87127366|gb|ABD21880.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368562|gb|ABX29533.1| N utilization substance B [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824581|gb|EFG41004.1| transcription antitermination factor NusB [Staphylococcus aureus A9754] gi|315198781|gb|EFU29109.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus CGS01] gi|320144127|gb|EFW35896.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MRSA177] Length = 129 Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V+ P Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKGHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ +IL+ D V++ AVE K+ ++ H+ Sbjct: 59 LDETISPYLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427] gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427] Length = 139 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 12/125 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNV 55 + NAR + +L + +++ + Sbjct: 2 TRRNARELIMQMLYE----GTFHPEEERERILYDQLNAMDSKEKSANKAIVKFIEDTYFG 57 Query: 56 TLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + IDA++ + S+ R +LR+++ ++ Y DV V+ AVE AK Sbjct: 58 VYEHVKEIDALIAGAAKNWSMARIAKVDLSILRLAIFELQYTDVPVKVAVNEAVEIAKIY 117 Query: 115 KENRH 119 ++ Sbjct: 118 STDKS 122 >gi|221102749|ref|XP_002157714.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 265 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 22/186 (11%) Query: 265 KVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTG 320 + + D+ RL+ ++ L + + D + + +L+D CS +G Sbjct: 1 HIFSFDLDFNRLKLMQKLLKKSACTSVKTKHQDFLKVQHCHPLYSKVEYILLDPSCSGSG 60 Query: 321 TIRRHPDVLWTRD----TDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSE 374 + R + L + D + + FQ L + F VK VV+S CS+ K+++E Sbjct: 61 IVSRMDEFLDNEESTFLKDRLKALSGFQTAALSHALQFPNVKK---VVYSTCSVHKEENE 117 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 +VV+K L W + + IR P +GFF Sbjct: 118 DVVEKAYNRFKETFHLC-HAFPEWSNRGLGEWEQAYKCIRAVP--------TIDYTNGFF 168 Query: 435 AVALRR 440 R Sbjct: 169 VALFER 174 >gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila LSv54] gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea psychrophila LSv54] Length = 141 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 6/141 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLT---CLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M AR + L S L + ++++ + ++ L Sbjct: 1 MSIRRFAREAALQFLYQDDFIPESADTPGELKERFEQFCEIYQVNKKGRTYALNLIAGVL 60 Query: 58 RFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 ID +++ + + R + + LLRV+ +I + DV ++ AVE AKR Sbjct: 61 ADQEAIDRLIEEAAVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVEIAKRFC 120 Query: 116 ENRHFAKLVNSILRRVSREKI 136 + K VN +L V Sbjct: 121 GDES-PKFVNGVLDAVKTLCQ 140 >gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66] gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66] gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408] Length = 143 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----ELVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu009] gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu012] gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu003] gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu005] gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu008] gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu009] gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu012] Length = 249 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL + IS ++D + + R A+ I Sbjct: 10 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHI 69 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D ++ L +L R + +LRVSV ++L+ DV + VVD AV+ AK Sbjct: 70 DDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSP 128 Query: 122 KLVNSILRRVS 132 VN +L +V Sbjct: 129 GFVNGVLGQVM 139 >gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294] gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294] Length = 135 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR+ LL + + + + R + + + + + Sbjct: 1 MATRQQARMAVVSLLYAYDLGNGNTSEHSNEILEEKKIRN---KQKDFALGLYEGVMEHI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID + L R + LR++ +IL+ ++ V++ AVE K Sbjct: 58 EEIDKAIVEHLKEWDFERLGAIERATLRLATYEILFGELDSAVVINEAVEITKSF-GTEQ 116 Query: 120 FAKLVNSILRRVSREK 135 K +N +L ++++ Sbjct: 117 SPKFINGVLDAIAKDH 132 >gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1] gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1] Length = 212 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + + +D D + D + A++ + Sbjct: 33 SNRSRAREFALQALYQHLVGGNDV-EAIDRFTRD--LSGFHKADSVHYDALLRGCINSQV 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA++ L ++ + + V + + DV V++ +E AK Sbjct: 90 DLDALIAPKLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGH 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum WCFS1] gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum WCFS1] Length = 139 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + L + L + + +V Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEETDAVEIP--AYLSTLVTGVRE 58 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 +DA + L SL R + +LR++ ++ + DV V+ A+E K Sbjct: 59 HQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAIELTKAFS 118 Query: 116 ENRHFA 121 ++R Sbjct: 119 DDRSRK 124 >gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae TMO] gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO] Length = 140 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M R + ++ + S+ +L+ + L + D + V L Sbjct: 1 MTRRSKMRDLVFKVIFQNEFRNDSIETVLEDIL-HISKSGLMKAD---ITRYVKGIYENL 56 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 P ID + L + SL R + +LR++ ++LY DV +D AVE AK+ Sbjct: 57 PSIDEKISLCLENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVEIAKKY-GTE 115 Query: 119 HFAKLVNSILRR 130 + +K VN +L + Sbjct: 116 NSSKFVNGVLDK 127 >gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB] gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB] Length = 139 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L ++S + D+EY A + + D R +++ +D ++ Sbjct: 11 ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDITYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|157821259|ref|NP_001100148.1| NOL1/NOP2/Sun domain family, member 4 [Rattus norvegicus] gi|149035614|gb|EDL90295.1| NOL1/NOP2/Sun domain family, member 4 (predicted) [Rattus norvegicus] Length = 381 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 60/266 (22%), Positives = 98/266 (36%), Gaps = 29/266 (10%) Query: 198 LPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + P + G +++ DA++ +PV G + VLDLCAAP Sbjct: 122 CSPNLRCFTFSKGDVSRFPPASVGSLGLMDYYLMDAASLLPVLALGLQHGDIVLDLCAAP 181 Query: 253 GGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--- 307 GGKT L+ +G + A D+S R +L+ L + + Sbjct: 182 GGKTLALLQTGCCRNLAANDLSTSRTGRLQKVLHSYVPQDIRKGNHIRVTSWDGRKWGEL 241 Query: 308 -----DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 242 EGDTYDKVLVDVPCTTDRHSLHEDENNIFQRSRKKERQMLPMLQVQLLGAGLLATKPGGH 301 Query: 361 VVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRI 415 VV+S CSL +E VVQ + I V++ L+ +D S + + Sbjct: 302 VVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKLFMDTFCFLPSCQVGELV 361 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRRL 441 P+++ + L R+ Sbjct: 362 IPNLMANFGP-------MYFCKLHRV 380 >gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus polymyxa E681] gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus polymyxa E681] Length = 149 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-------QILVRAIV 53 MK + AR ++ + + + +D+ ++A ++ + V V Sbjct: 1 MKRRL-ARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEENEAEVVVKNAAVLRAYVLEHV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 T ID +L L + R +Q+LR++ ++++ DV V+ A+E + Sbjct: 60 RGTWEHKEAIDGLLVDYLKGWQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIELS 119 Query: 112 KRDKENRHFAKLVNSILRR 130 K K VN +L R Sbjct: 120 K-HFGTEESGKFVNGVLGR 137 >gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli 95/1000] gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli 95/1000] Length = 174 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 10/139 (7%) Query: 3 SGMNARLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 + AR+ + L + K++++ L + EY D S + +V T+ L Sbjct: 42 TRRQARIYAVMALYSYEINEKKVNINELFNFEYDDKKAANNS-----FTKELVEGTINNL 96 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +ID++++ + + R +Y + ++R+S+ ++YL D+ ++D AVE AK ++ Sbjct: 97 QKIDSIIEKYSKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSVIIDEAVEIAK-IFGDK 155 Query: 119 HFAKLVNSILRRVSREKIE 137 K VN IL + E I+ Sbjct: 156 DSYKFVNGILDAIQEEDIQ 174 >gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b] gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b] Length = 139 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L ++S + D+EY A + + D R +++ +D ++ Sbjct: 11 ECAVQALYSW---QLSNNDIADVEYQFLAEQDVKDVDISYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + + Sbjct: 127 LDKAAPQIRPN 137 >gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 169 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 7/125 (5%) Query: 2 KSGMNARLVSSHLLSC--VMRKRISLT--CLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 AR + + VMR+ S+ + + + Q D L ++I + L Sbjct: 26 TPRRRAREYALQGVYQSLVMRRAGSIPNGAAIAKQLSEDPAFRRCQLD--LFQSIFDGVL 83 Query: 58 RFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKE 116 ++A++ L + L + ++ L V ++ AVE AK Sbjct: 84 ARTDELEAIITPALDRPINELSPVEHAALLIGAYELAADLSVPYKVAINEAVELAKTFGG 143 Query: 117 NRHFA 121 Sbjct: 144 TDGHK 148 >gi|156938118|ref|YP_001435914.1| Fmu (Sun) domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156567102|gb|ABU82507.1| Fmu (Sun) domain protein [Ignicoccus hospitalis KIN4/I] Length = 405 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 65/424 (15%), Positives = 129/424 (30%), Gaps = 49/424 (11%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +++ L+ K SL L+ Y L + + +++ R + L Sbjct: 23 IAARALARA-SKGYSLKGYLEKAYKKYK---LPDPVRPALVGMISDVARRWMLLSRALGL 78 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 Y + ++ Q L+ V + + R + + Sbjct: 79 SYERPKASFDYWFKVVI---AYQALFRKVKPGKL------WWAFKRFPRDLYEELLKAGP 129 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 + +R + +W E L+ F + + D ++ + + Sbjct: 130 EDYLAGLGGEERERVYRSVAKWAWEELKKFTDPKEFVDALD-HPEGFWVRIRDPGAVPEL 188 Query: 190 AHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLC 249 P P+ +V G + + ++ + LDL Sbjct: 189 KRLYEVEEGPFDDSLYLRGPKRLVLKSGLHPKKVVIMELASMSVAH---LAKGVRALDLT 245 Query: 250 AAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA 309 AAPGGK+ L G V + D+ R + + + DA +K FD Sbjct: 246 AAPGGKSLHLSDRGFIVISNDLDP-----------RRFAFDVEKVVSDARLPAFRKAFDT 294 Query: 310 VLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLD 369 V++D CS G + P+ + K + +QR+L+ +S K G ++++ C++ Sbjct: 295 VVLDPDCSGIGRLGS-PETRILLPFINKNKMSEYQRELIKGMLSLAKRGTRLIYTTCTIT 353 Query: 370 KQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSG 429 +++E E V GW P + Sbjct: 354 YEENEA--------HSELFEEVAEPVEVEVGAPRGRR----GWRWFLPQL--------HK 393 Query: 430 MDGF 433 GF Sbjct: 394 TIGF 397 >gi|167950837|ref|ZP_02537911.1| Sun protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 104 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 5/101 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 KS + RL+++ +L V+ K SL+ LL RD+ L + + +R P Sbjct: 9 KSAADPRLIAARVLRDVL-KGRSLSDLLPERLNGLD----DPRDRALAQELCYGVMRGYP 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYA 102 R+ A++ +L L K LQ L+ + + Q+ + VA +A Sbjct: 64 RLQALVGLLLKKPLKAKDQDLQALILIGLYQLSEMRVAAHA 104 >gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056] Length = 143 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKAVEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087] Length = 143 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-------ILVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKVAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330] gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355] Length = 143 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|254168646|ref|ZP_04875489.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] gi|289595747|ref|YP_003482443.1| Fmu (Sun) domain protein [Aciduliprofundum boonei T469] gi|197622480|gb|EDY35052.1| NOL1/NOP2/sun family, putative [Aciduliprofundum boonei T469] gi|289533534|gb|ADD07881.1| Fmu (Sun) domain protein [Aciduliprofundum boonei T469] Length = 355 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 33/200 (16%) Query: 245 VLDLCAAPGGKTAQLI--VSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYC 302 VLD CA GGK+ + S K+ A D+++R+L+ L + + + F Sbjct: 184 VLDYCAGSGGKSLAMHALNSNLKIHAYDINERKLKSLENRAKKWE------MNVYIFYDK 237 Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 P F VLVDAPCS G R+P+ + +D K A Q ++L + VK G +V Sbjct: 238 PSGEFPVVLVDAPCSGVGAAARNPEAKY---QEDFEKFAKMQMEILNEAKENVKSHGYLV 294 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPV--ELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 + CS ++E ++++ L +P V E+ Y K + + Sbjct: 295 YVVCSYTPWETENLIEEFLNKAPYFVPQEIKCEYERYIKKGNYGAYILA----------- 343 Query: 421 EKIDGVSSGMDGFFAVALRR 440 D F+ LRR Sbjct: 344 ---------GDIFYVSVLRR 354 Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 17/97 (17%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ ++ MRK + D+ S LS ++ V IV+ +R+ D +++ Sbjct: 4 KIAVRVIRKWMRKGNMARAMRDILPRSS----LSFEEREQVARIVHDVVRYKLYYDYIME 59 Query: 69 FV-------------LISSLPRKKYSLQQLLRVSVAQ 92 L Y ++ L + +A+ Sbjct: 60 KRGMKKNAENYVKLSLKKPKVNTPYHIRNSLSLKLAE 96 >gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059] Length = 143 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFSYSYDKDEEADKAAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|312143732|ref|YP_003995178.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus'] gi|311904383|gb|ADQ14824.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus'] Length = 133 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 50/121 (41%), Gaps = 4/121 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S R+ +L + + L L + + + D + ++ + Sbjct: 5 SRHKQRIWVLQILYGLDIRNKLDLESALKSFKEFLKEKEIKKEDI-YAKELLLGVITERE 63 Query: 62 RIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +DA ++ + ++ R + +LR+++ +I + ++ ++ AV+ AK+ ++R Sbjct: 64 ILDAQINEQAIDWTIERMPPVDRNILRIAIYEIQH-EMPAGVAINEAVKIAKKFADDRSP 122 Query: 121 A 121 + Sbjct: 123 S 123 >gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] Length = 156 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +R + L + R +++ F + D +++ ++ Sbjct: 15 SPRHRSREFALQGLYEWLLNRDDAPVIIEHIRQAHGF---DKADTGHFVTLLSGSIHQAD 71 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ++ L + L +L + ++ ++++ V++ AVE K Sbjct: 72 KLREELAPHIDRPLEELSPVEHAILLLGAFELSNHIEIPYRVVINEAVELTKSFGGIDGH 131 Query: 121 A 121 Sbjct: 132 K 132 >gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32] Length = 151 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 7/130 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + +L +++ LL G + + +V + Sbjct: 15 SRRQARRRAVEMLYEAVQRDTDAVTLLADRVGATEVDPIGD----YTITLVEGVTGRKTQ 70 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID +L +L R +LRV V ++L+ DV D +D AV AK Sbjct: 71 IDELLAEHAQGWTLERMPKVDLAVLRVGVYELLWAEDVPDPVAIDEAVGLAKE-LSTDDS 129 Query: 121 AKLVNSILRR 130 + VN +L R Sbjct: 130 PRFVNGVLGR 139 >gi|193783571|dbj|BAG53482.1| unnamed protein product [Homo sapiens] Length = 251 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 24/237 (10%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRLEKLR 280 +++ DA++ +PV G VLDLCAAPGGKT L+ +G + A D+S R+ +L+ Sbjct: 22 YYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ 81 Query: 281 CNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHPDVLW 330 L + + D VLVD PC++ ++ Sbjct: 82 KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFK 141 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPI 386 + Q +LL G+ KPGG VV+S CSL +E VVQ + I Sbjct: 142 RSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSI 201 Query: 387 PVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 V++ L +D S + + P+++ + +RRL Sbjct: 202 QVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGP-------MYFCKMRRLT 251 >gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus epidermidis M23864:W1] gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus epidermidis M23864:W1] Length = 128 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V Sbjct: 2 SRKESRIQAFQTLFQLEMKDTDLTITEAINFIKDDHPEL---DFDFIHWLVTGVKDHESV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L S+ R S + +LR++ ++L+ D + +++ AVE K+ ++ H+ Sbjct: 59 LDEKIKPHLKDWSIERLLKSDRIILRMATFEMLHSDTPEKVIINEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRRVS 132 +N +L ++ Sbjct: 119 -FINGVLSNIN 128 >gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547] gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547] Length = 137 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 6/136 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + LL ++ +++ L+ + +++ +V + Sbjct: 1 MAARSKARKRAVDLLFEAEQRSLNVEVLMARRREEPEAQVVVPE---FTVTLVEGVVSHW 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 I+ L SL R + +LR+ +I++ DV D + AV A Sbjct: 58 ASINDALSSWSQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAVNLA-AHLSTD 116 Query: 119 HFAKLVNSILRRVSRE 134 V+ +L R+S+ Sbjct: 117 ESPNFVSGLLTRISQM 132 >gi|115725272|ref|XP_792601.2| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4 [Strongylocentrotus purpuratus] gi|115958636|ref|XP_001193352.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4 [Strongylocentrotus purpuratus] Length = 513 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 99/266 (37%), Gaps = 24/266 (9%) Query: 145 ISIIPEWFKERLENFYGKERVLAISDACI--SPLYIDLTVKFDIETWAHKLNAVMLPTGG 202 W+ R G E + + + +L + ++A + + Sbjct: 198 RQPTKPWWDGRYIVATGYEHRMDLVQQLELEERGHSELVSEPSGANPIKVVDADLEISPH 257 Query: 203 IRLKELPESIVSLP------GFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256 +R S LP +++ D ++ +PV + VLDLCA PGGK+ Sbjct: 258 LRCFMNKSSFKRLPQAKRGSEEPNLQYYIMDPASVLPVLAMDVRTDDVVLDLCAGPGGKS 317 Query: 257 AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLY---------AEDIIEMDAFDYCPKKLF 307 ++ + T +++ L + R + L L A + +D ++ + Sbjct: 318 VAILQTMLISTLT-ANEKVLSRKRRLQEVLGLCLPRSIRTSGAIRVSGLDGCEWGQIEPM 376 Query: 308 --DAVLVDAPCSST---GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 D VLVD PCS+ T + +R + Q LL G+ VKPGG VV Sbjct: 377 AYDKVLVDVPCSTDRVSATQADNNLFKVSRSRERW-DLPELQTDLLCAGLQAVKPGGTVV 435 Query: 363 FSNCSLDKQDSEEVVQKVLRSSPIPV 388 +S C++ ++ VVQ + Sbjct: 436 YSTCTMSPLQNDGVVQNAITRCQEEF 461 >gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2] gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2] Length = 138 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R ++ L +S L + + +S++ +V + L Sbjct: 1 MGARRKSRELALQALYQADMSNVSALDTLPVLCEN---FEVSRKALPYGEGLVGGVVANL 57 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID +++ + R + ++R++V + + DV ++ A+E AKR Sbjct: 58 AAIDRIIEAGSAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIELAKRFGSED 117 Query: 119 HFA 121 A Sbjct: 118 SPA 120 >gi|33991631|gb|AAH56405.1| NSUN5C protein [Homo sapiens] gi|62740214|gb|AAH93976.1| NSUN5C protein [Homo sapiens] gi|75516532|gb|AAI01516.1| NSUN5C protein [Homo sapiens] Length = 117 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 14/114 (12%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A FQ++ L ++F ++ +V+S CSL ++++E++VQ L+ +P L Sbjct: 15 SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVQDALQQNPGAFRL 71 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P A ++ E +R +P GFF + R+ P Sbjct: 72 APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116 >gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057] Length = 143 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEGADKATEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis SK36] gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus sanguinis SK36] Length = 148 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ D+ + +V+ ++ Sbjct: 18 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEGADKAAEADIPAFLLNLVSGVVQSK 73 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 74 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 133 Query: 119 HFA 121 Sbjct: 134 SSK 136 >gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica ACS-134-V-Col7a] gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica ACS-049-V-Sch6] gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica ACS-049-V-Sch6] gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica ACS-134-V-Col7a] Length = 134 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 12/127 (9%) Query: 1 MKSGMN---ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M N AR + +L + + + D I++ L Sbjct: 1 MSKKRNRREARQYAFQVLYANEFHTSNDDVIFPDGEISLSM------DIAYANQIIDGVL 54 Query: 58 RFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRD 114 L ID +L+ + +LR+++ ++ Y +V+ V++ AV+ AK Sbjct: 55 SHLEEIDTILEPYCTKRKFVLMDKVDRAILRLAIWELNYNSEEVSPSIVINEAVQLAKSF 114 Query: 115 KENRHFA 121 + + Sbjct: 115 GSDASYK 121 >gi|94984805|ref|YP_604169.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300] gi|119390766|sp|Q1J0I4|NUSB_DEIGD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94555086|gb|ABF45000.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300] Length = 169 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSA-----FRLLSQRDQILVRAIVNVTL 57 + AR + +L R ++ L + GD F L+ R +V+ Sbjct: 14 TRRAAREFAFRVLFEAERGKLPLETVFTRAEGDMREGDDTFAQLNAEALAFARQLVDGLG 73 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 +DA L + + + +LR++ ++LY V++ AV A++ Sbjct: 74 ERRADVDAALRRTIRGWDFEQMAQTDLNVLRLATYEMLYTPEPHPPVIESAVRIARKFGG 133 Query: 117 NRH 119 Sbjct: 134 EDS 136 >gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798] gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798] Length = 153 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 6/126 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR ++ +L R +L + + ++ + + Sbjct: 12 RHQARALAMQVLYEAETTRKQPYEILQRRRNE---ENIPEQVHAYASDLAIGVWQNRKEY 68 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFA 121 D+++ ++ + + +LR++V ++L DV A ++ AVE AK Sbjct: 69 DSLITRFTPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVELAKEY-GAEASP 127 Query: 122 KLVNSI 127 K VN + Sbjct: 128 KFVNGV 133 >gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM 20098] gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM 20098] Length = 137 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + L K + LL+ + IV ID Sbjct: 6 ARKRALNTLYEADEKGQDILSLLEERIAVPGAQTPLPE---YAIEIVRGVAEHRRDIDEK 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 LD + R + +LR++ +I+Y D V D +D A+ AK + A Sbjct: 63 LDECSTGWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAKTLCDGESPA 119 >gi|193786589|dbj|BAG51912.1| unnamed protein product [Homo sapiens] Length = 335 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 75 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 134 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 135 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 194 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 195 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERRILPVLQVQLLAAGLLATKPGG 254 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 255 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 314 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 315 VIPNLMANFGP-------MYFCKMRRLT 335 >gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri RM4018] gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri JV22] gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018] gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri JV22] Length = 131 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL +T +D + R +Q+D + N T++ L Sbjct: 1 MATRTQARESVIGLLYAYDLGNDGITKFVDEILEEKKIRN-NQKD--FALNLFNGTIKNL 57 Query: 61 PRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID ++ + +L + +LR+++ +IL+ + +++ A+E +KR + Sbjct: 58 SQIDENIVSNLNQGTLSDIGSVEKSILRLAIYEILFESLPKAIIINEAIELSKR-LASDG 116 Query: 120 FAKLVNSILRR 130 K +N +L + Sbjct: 117 APKFINGLLDK 127 >gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum] Length = 157 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 13/141 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + F + D R Sbjct: 8 AARRNARQFAVQAIYSWQLTKGNVADIEQYFLSGDKFEEEEHQADAPVCKAPDTDVSYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 + + +D+ + L L LLR+++ ++ DV V++ A+E Sbjct: 68 DLFAGVVLSHQELDSKMRPYLSRPLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRR 130 AK K VN +L + Sbjct: 128 LAK-LFGAEDSHKFVNGVLDK 147 >gi|218190605|gb|EEC73032.1| hypothetical protein OsI_06971 [Oryza sativa Indica Group] Length = 350 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 101/351 (28%), Gaps = 70/351 (19%) Query: 148 IPEWFKERLENF----YGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 +P F E L+ I ++ + L+ V Sbjct: 11 LPPAFLEFLQENGLDPMMYSMADTIPRYIRLKPGMEAQIPEIQSELKCHLDKVSWLPDFY 70 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS- 262 + + I S + +G + DA++ V VLDLCAAPG K L Sbjct: 71 AIPPQVQ-IASSKAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADML 129 Query: 263 --GAKVTALDVSKRRLEKLRCNLDRLHLYAED-------------------------IIE 295 +T +DV+K RL R L + L Sbjct: 130 GGRGSLTGVDVAKHRLAACRTMLQKYSLGDCCRLFVADGTSFSILPVNSSLGSGEGSTCL 189 Query: 296 MDAFDYCPKKLFDAVLVDAPCS------------------------STGTIRRHPDVLWT 331 D + D S +G + Sbjct: 190 KDNGSTLSEWTSKRSWKDRQKSKKARTAGSPHLTSTSEPELIYYGKHSGLVGLRKCDALR 249 Query: 332 RDTDDIVKSACFQR-KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 DD +++ + + +LL G +K GG +V+S CSL +E VVQ+ L EL Sbjct: 250 PSADDEAQTSGYDKLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCKH-SSAEL 308 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 ++SA +R P +S G F +L Sbjct: 309 QKIDSADSWPCRSGSIF---KTLRFDP--------ATSQTSGLFVAKFTKL 348 >gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae TN] gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae Br4923] gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae] gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae Br4923] Length = 190 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 3/133 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + LL + +S ++++ + +L + Sbjct: 6 KGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHPYTVVVAQGVSEHTA 65 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 RID ++ L L R + +LRVS+ ++LY DV + VD AVE AK Sbjct: 66 RIDELIISHLQGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEAVELAKE-LSTDD 124 Query: 120 FAKLVNSILRRVS 132 VN +L +V Sbjct: 125 SPGFVNGLLGKVM 137 >gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612] gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612] Length = 152 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 12/146 (8%) Query: 1 MKSGMN---ARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAF----RLLSQRDQILVRA 51 M MN R ++ + + + L L + + +S + Sbjct: 1 MSRKMNRKEERELALRGIFQIDFHAEDAELDTSLKNFFELAGQGDPEDEVSGMTGGYAKK 60 Query: 52 IVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVE 109 ++N L IDA++ L R + +LR+ V ++LY V ++ AVE Sbjct: 61 VINAALENQGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYTKVPKEVAINEAVE 120 Query: 110 QAKRDKENRHFAKLVNSILRRVSREK 135 AK+ +N IL RV+ E Sbjct: 121 LAKKYASEES-KTYINGILNRVAVEH 145 >gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769] gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769] Length = 183 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 14/146 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD----------SAFRLLSQRDQILVRA 51 +S +R+ + L + + + ++ A + D L A Sbjct: 19 RSRTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEGQVPDADIRLFTA 78 Query: 52 IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAV 108 IV ++ IDA++ VL + R L+ LLR + ++ D +++ + Sbjct: 79 IVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQDPAPSRVIINEYM 138 Query: 109 EQAKRDKENRHFAKLVNSILRRVSRE 134 + A +++N +L +SR Sbjct: 139 DVAHGFFSGDE-PRMLNGVLDAMSRR 163 >gi|299749810|ref|XP_001836347.2| williams-Beuren syndrome critical region protein 20 copy A [Coprinopsis cinerea okayama7#130] gi|298408609|gb|EAU85531.2| williams-Beuren syndrome critical region protein 20 copy A [Coprinopsis cinerea okayama7#130] Length = 486 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 87/258 (33%), Gaps = 41/258 (15%) Query: 216 PGFAEGVWWVQDASASIPVQLFGTLNNLS--VLDLCAAPGGKTAQL---IVSGAKVTALD 270 P + +G +QD ++ P + V+D AAPG KT+ L + + K+ A + Sbjct: 213 PAYLDGRAIIQDKASCFPAFVLNPPATEDSVVIDATAAPGNKTSHLSALMGNKGKLYAFE 272 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 KRR L+ L+ I D P+ + + Sbjct: 273 RDKRRFLTLQKMLNTAQCRNAIPINADFLTIDPEDNKFRPVTHIGSGIVNRLDHLIPTGT 332 Query: 331 TRD-------------------------TDDIVKSACFQRKLLLQGISFVKPGGIVVFSN 365 + + + K A FQ K++ + F +V+S Sbjct: 333 RKSTDKLETSRLLHTVLILTAIEEEDIPNERLAKLATFQLKMIQHAMKFPNVE-RIVYST 391 Query: 366 CSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDG 425 CS+ ++E VV+ L S A + + P R P+ ++ DG Sbjct: 392 CSIHATENEHVVRAALDS--------DEAKAGPFVLAPRNEVIPSWSRRGLPEEMKSADG 443 Query: 426 VSSGMDGFFAVALRRLIQ 443 G +GFF R+ + Sbjct: 444 --DGTNGFFVSCFIRVQK 459 >gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM 20601] gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM 20601] Length = 130 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 12/132 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR V+ L + +S + + V+ +V+ Sbjct: 1 MK-RREAREVALQALFQMELNEMSFEQAVSNVMPEEQDD--------YVKKLVSGVDTHK 51 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID ++ L + R +LR+SV ++ Y D+ D ++ A+E +K + Sbjct: 52 ADIDTAIEAHLDNWRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEISK-VYSDE 110 Query: 119 HFAKLVNSILRR 130 +K +N +L Sbjct: 111 KSSKFINGVLAN 122 >gi|332808867|ref|XP_003308124.1| PREDICTED: putative methyltransferase NSUN4 [Pan troglodytes] Length = 384 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384 >gi|40316918|ref|NP_950245.2| putative methyltransferase NSUN4 [Homo sapiens] gi|152125805|sp|Q96CB9|NSUN4_HUMAN RecName: Full=Putative methyltransferase NSUN4; AltName: Full=NOL1/NOP2/Sun domain family member 4 gi|56204053|emb|CAI21962.1| NOL1/NOP2/Sun domain family, member 4 [Homo sapiens] gi|119627325|gb|EAX06920.1| hCG2031650, isoform CRA_h [Homo sapiens] gi|261860580|dbj|BAI46812.1| NOL1/NOP2/Sun domain family, member 4 [synthetic construct] Length = 384 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384 >gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2] gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2] Length = 176 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 4/120 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 AR + L + D++ + D + +++ + Sbjct: 33 PRSRAREFALQALYQHLVGG---NDAADIDEFTRGLAGFHKADAAHYQTLLHGCIGAAAD 89 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 IDA++ +L L + + + V + + DV V++ +E AK Sbjct: 90 IDALIVPLLDRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHK 149 >gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia pediculicola USDA] gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia pediculicola USDA] Length = 140 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR+++ L + ++ + + D + I T + +I Sbjct: 5 RHKARIMAVQALYSWQISGTKNSLIVVDFLNMIQSKKID-VDIEYFKKIFIGTSNKVSKI 63 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 D L +L + +LR+ V ++LY+ + +++ A+E +K+ R + Sbjct: 64 DQKLFRHTSRALKLIDQIEKAILRLGVFELLYIKIPYKVIINEAIELSKKFGSERSYK 121 >gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM 1131] gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM 1131] Length = 149 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + + + +S D R +++ ++D ++ Sbjct: 22 ECAVQAIYSWQLSGNPIAEVEYEFIAE---QDMSDVDVNYFRELLSGVATNATKLDQLMA 78 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRVS+ ++ + DV ++ +E AK K VN + Sbjct: 79 PYLSRQLEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAK-VFGAEDSHKFVNGV 137 Query: 128 LRR 130 L + Sbjct: 138 LDK 140 >gi|146304848|ref|YP_001192164.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM 5348] gi|145703098|gb|ABP96240.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348] Length = 363 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 66/347 (19%), Positives = 123/347 (35%), Gaps = 38/347 (10%) Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 D E +++ + + ++ + +R+K+ +P W E L+ + Sbjct: 40 DEMFELSRKLVLSYY------ALEGKSARKKVTSFLNKGSKVSLPPWMSEELKELIDLDA 93 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTG-----GIRLKELPESIVSLPGFA 219 L ++ + + D + L + + + +I F Sbjct: 94 YLKSAELGRYKWFRVNRILADEDDVLSSLETQGIKFERDEDFNYLFRVISGNITKTKEFD 153 Query: 220 EGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQLIVSGAKVTALDVSKRRL 276 + VQD ++ VQ G +L+L +APG K +L + +++ +RL Sbjct: 154 DFKIIVQDKASVAVVQALGPEKGDVILELASAPGLKAELIYELTQGDVYLILAELNHKRL 213 Query: 277 EKLRCNLDRLHLY--AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW-TRD 333 +K L L + D I D+ D VL+DAPCSS+G + P VL RD Sbjct: 214 DKEIKLLSTLGVDLGKVDFINQDSTRNS-VLRADKVLIDAPCSSSGIFYKEPTVLLTLRD 272 Query: 334 TDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + + Q+ ++ + + K V+S CS+ ++ E ++ E V Sbjct: 273 RDKVENFSKLQKLMIKEAFNISFKKA---VYSVCSIFPEEGEVIMD----------EYVD 319 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 G + + G G + FF LR Sbjct: 320 KLMTTEVGGIEGYGKHKSGKL------SRRYFGHIHGTEDFFIATLR 360 >gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101] gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101] Length = 159 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + S + + D ++ Sbjct: 15 MKS--ASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYDGAEMIDGDIRHFADVLET 72 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + D L + R +L+ L R + A++ V+ V+ A+ Sbjct: 73 AVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELRDTGTPPKVVITEYVDVARA 132 Query: 114 DKENRHFAKLVNSILRRV 131 E K VN++L + Sbjct: 133 FFEGSDEPKFVNAVLDHM 150 >gi|15680185|gb|AAH14441.1| NOL1/NOP2/Sun domain family, member 4 [Homo sapiens] Length = 384 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384 >gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii ATCC 12478] Length = 174 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 2/163 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + +L + +S +++ +A + A+ Sbjct: 11 KGRHQARKRAVDVLFEAEARGMSPLEVVESRTALAAAKPEVAPLHPYTAAVARGVSEDAA 70 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L +L R + +LRVSV ++L+ DV + VD AVE AK + Sbjct: 71 HIDDLIAAHLQGWTLDRLPAVDRAILRVSVWELLHADDVPEPVAVDEAVELAKELSTDES 130 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162 + + + + A +P + EN Sbjct: 131 PGFVNGVLGQVMLVTPQIRAAAHAVRQAVPGDAERLPENQGSC 173 >gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 138 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + +L + ++ + + + D I ++ I Sbjct: 8 RRKARACALQMLYSWEISQNNIKDSAIEFLKEKNKKNI---DIIYFYELIIGITYNCRSI 64 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122 D ++ L SL + +LR+S ++ D+ ++ +E AK + K Sbjct: 65 DDLMKPYLSRSLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK-LFGSEDSHK 123 Query: 123 LVNSILRR 130 +N +L + Sbjct: 124 FINGVLDK 131 >gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC 51888] gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC 51888] Length = 170 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 9/127 (7%) Query: 12 SHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 L + L ++ D+ +L+ D++ I+ +R ID + Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDNRDEMLAGADRVFFADILRAVVRRQREIDPM 82 Query: 67 LDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKL 123 +D L L R L+ +LR VA+++ DV + V A R + ++ Sbjct: 83 IDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVA-RVFFDEEEPRV 141 Query: 124 VNSILRR 130 VN +L + Sbjct: 142 VNGVLDK 148 >gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis SK119] gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis subsp. hominis C80] gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis SK119] gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis subsp. hominis C80] Length = 128 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + L + K LT + + + L D + +V Sbjct: 2 SRKESRKQAFQTLFQLEMKNTDLTINEAINFIKDDYPDL---DFEFIHWLVTGVKDHEQV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D ++ L S+ R + + +LR++ ++L+ D +++ AVE K+ + Sbjct: 59 LDQSIEPKLKDWSIQRLLKTDRIILRMATFELLHSDTPPKVIINEAVELTKQF-SDEGHY 117 Query: 122 KLVNSILRR 130 K +N +L Sbjct: 118 KFINGVLSN 126 >gi|79547453|ref|NP_201419.2| unknown protein [Arabidopsis thaliana] gi|332010788|gb|AED98171.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 395 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 22/145 (15%) Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356 +D VLVDA C+ G+I+ W Q LL G +K Sbjct: 253 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 312 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G +V+S CSL +E+VV + L + K +P +R Sbjct: 313 EAGTLVYSTCSLTHAQNEDVVDQFLSEN---FSAELQEIEMAKDWPCRSGRTP-KTLRFD 368 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P G F +R+L Sbjct: 369 PSTSATS--------GLFVAKIRKL 385 >gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus Ellin6076] gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus Ellin6076] Length = 146 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 3/133 (2%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +L ++ + ++ Y +RD V +V T+ L +D + Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD-PFVIDLVRGTVEHLAEVDDRITRHA 70 Query: 72 IS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + R + +LR++V ++ +D A+E A++ N + VN +L Sbjct: 71 EHWRMERMPAVDRNILRLAVYEMTRGGTPAPVTIDEALELARKF-SNEESVQFVNGVLDA 129 Query: 131 VSREKIELLQRIA 143 V RE E A Sbjct: 130 VRREMPEPNAPPA 142 >gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis ATCC BAA-381] gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis ATCC BAA-381] Length = 131 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 6/131 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL + + + R + + N + + Sbjct: 1 MATRHQVRNAVVSLLYAKEM-GSEMNDFVSEYLEEKRIRN---DQRKFADKLFNGVCKNV 56 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID LD L + + + +LR+ +I+Y + +++ A+E AK Sbjct: 57 NQIDNELDKYLNEYKISQIGTVERAILRLGAYEIMYEAIDKAIIINEAIELAKELAG-ES 115 Query: 120 FAKLVNSILRR 130 K +N +L R Sbjct: 116 SPKFINGVLDR 126 >gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM 16992] gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium pseudocatenulatum DSM 20438] gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM 16992] gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 147 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + L K + LL + IV + ID+ Sbjct: 6 ARKRALNTLYEADEKGQDILSLLAERIEQPGAQTPLPE---YAIEIVRGVAEHIAAIDST 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 LD + R + +LR++ +I++ DV + +D A+ AK ++ A Sbjct: 63 LDEHSTGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLAKTLCDDESPA 119 >gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str. Tucson] gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str. Tucson] Length = 138 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + ++ D R + + +D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLTEQDVNGVDIAYFRELFSGVAVNAGMLDTLMV 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ + DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|330838907|ref|YP_004413487.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185] gi|329746671|gb|AEC00028.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185] Length = 140 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%) Query: 3 SGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVT 56 S AR + L + + + D+A + +RD ++V T Sbjct: 2 SRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRGT 61 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKR 113 L ID + L R + ++R+++ ++ Y V ++ AVE AK+ Sbjct: 62 REHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKK 121 Query: 114 DKENRHFAKLVNSI 127 ++ VN I Sbjct: 122 F-GTDDSSRYVNGI 134 >gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum infernorum V4] gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum infernorum V4] Length = 143 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 7/147 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M S R + L + L +L F L Q+D+ V + Sbjct: 1 MISRRKIRELIVQFLYQWEMNKGVGLDNML---LDFWDFSPLDQKDKEAVEQWLKEIAEH 57 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 I+ ++ + + SL R + +L + + +ILY D+ ++ +VE AK+ Sbjct: 58 KEAIEEKINSYVKNWSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEIAKKY-ST 116 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAG 144 K VN IL V ++ Sbjct: 117 EESGKFVNGILDSVLKDSGRKAWMSCP 143 >gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae 91E135] gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135] Length = 146 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 4/138 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR+++ + + + + D+ + L + ++ +VN T L Sbjct: 3 MDLRHKARVLAFQKIYSIDINCKAKDNIYDIFNLEDHGLELEENLKLFYSVLVNGTYDNL 62 Query: 61 PRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 ID ++ + L L R +LR+SV + + LDV ++D A+ AK+ + Sbjct: 63 EFIDKLISDISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIAKKY-GS 121 Query: 118 RHFAKLVNSILRRVSREK 135 ++ K VN IL + + Sbjct: 122 KNSYKFVNGILDALLKNM 139 >gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa M567] gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC 17931] gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa M567] gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC 17931] Length = 136 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 8/132 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S ARL + +L +++ + +L +A ++ IV Sbjct: 1 MNSRTKARLRAVEVLFEADQRQEDIIDVLKRRRLHTAAQIS-----AYAEEIVRGVREHD 55 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 I L+ S R + +LR+ ++LY DV D + A A+ N Sbjct: 56 DEIREYLETYARDWSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATGLARVLSTND 115 Query: 119 HFAKLVNSILRR 130 K VN +L + Sbjct: 116 S-PKFVNGLLDK 126 >gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8] gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8] Length = 178 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 5/131 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ +R + + M L+ + D + ++ D+ + ++ L Sbjct: 38 QNRRKSRELVLKAVYRGMLNDSELSQVFRDMRDDPDY---NKADEAYFKHLLQAVTENLT 94 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID + + +L +LR++ ++++ L + V++ VE AK Sbjct: 95 AIDGKIVGFIDRTLEELSPVEHAILRIAGCELMFDLSIPYRVVINEGVELAKVFGGTDG- 153 Query: 121 AKLVNSILRRV 131 K +N +L + Sbjct: 154 HKYINGVLDKF 164 >gi|42527665|ref|NP_972763.1| NOL1/NOP2/sun family protein [Treponema denticola ATCC 35405] gi|41818493|gb|AAS12682.1| NOL1/NOP2/sun family protein [Treponema denticola ATCC 35405] Length = 263 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 22/236 (9%) Query: 216 PGFAEGVW--WVQDASASIPVQLFGTLNNLSVLDLCAAPGGK-------TAQLIVSGAKV 266 ++E + + D ++ + L S LD+CAAPGGK + A Sbjct: 38 EAYSENLIQNYYLDYASIQAARAMPVLEEGSCLDMCAAPGGKTLVLLSRIKENAEIQANE 97 Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRR 324 + D R + L +L + DA +D +L+DAPCSS + + Sbjct: 98 LSADRRNRLIRVLDEHLSEETRKRIRVSSYDASRMPRYGQELYDRILLDAPCSSERHVLQ 157 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 + L I + Q LL +KP G +V+S C+L ++++ +++K+++ Sbjct: 158 NEKYLKQWTEARIKNLSQRQWALLSAAFLLLKPKGFLVYSTCALADEENDFLIEKLIKKY 217 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V L R PD E + + +++ Sbjct: 218 KEKVRLEEKLDGLGPISPEKTRY----GFRFLPDKAEGAGPI-------YFSLIQK 262 >gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC BAA-430] gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC BAA-430] Length = 199 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 7/168 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +AR+ + LL ++ ++ + + + + N L L Sbjct: 1 MATRTHARVAVAQLLYAYGSGNDGISKFVEEILSEHKIKNAQNE---FAKTLFNGVLEHL 57 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK---E 116 +D + + + R + +LR+ +I++ + V++ A+E K Sbjct: 58 EEVDLRIKHQIKNWDFERIGDMERAILRLGAYEIIFSGMDKAIVINEALEITKNFSNETS 117 Query: 117 NRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + +++ I + + + ++ A I E N G E+ Sbjct: 118 TKFINGILDGIAKNATLSVDSIKEQEAHKQEINNLETENTPNSKGFEK 165 >gi|56693371|ref|NP_001008649.1| NOL1/NOP2/Sun domain family, member 4 [Danio rerio] gi|56269713|gb|AAH86725.1| NOL1/NOP2/Sun domain family, member 4 [Danio rerio] Length = 327 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 107/284 (37%), Gaps = 35/284 (12%) Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLF 237 D + L I +++ DA++ +PV Sbjct: 53 HNDSSDVESAPLQTSITPDIKCLVFPRGDISRFKPARPDSSGILGYYLLDAASVLPVLAL 112 Query: 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSK------RRLEKLRCNLDRLHLY 289 +VLDLCAAPGGKT S + A D+S R++ + + L Sbjct: 113 DVRPGQTVLDLCAAPGGKTLALLQAHSVNHLWANDLSVSRTGRLRKILQSYVPKECLDEE 172 Query: 290 AEDIIEMDAFD--YCPKKLFDAVLVDAPCS---STGTIRRHPDVLWTRDTDDIVKSACFQ 344 I +D + +K FD VLVD PC+ + + + +R + K Q Sbjct: 173 NIHITCIDGRELGMREEKSFDRVLVDVPCTTDRHSAVVEENNIFKRSRTK-ERQKLPLLQ 231 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-------ELVPLNSAY 397 +LL+ GI + GG++V+S CSL + +E VVQ+ + + + +L + Sbjct: 232 IQLLVAGIQAARQGGLIVYSTCSLSQLQNECVVQQAISVAQEELGITVQVQDLRWFTQRF 291 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A LS G + + P + + + L+R+ Sbjct: 292 SDTFHFAPQLSV-GEL-VLPHLCANFGPI-------YMCKLQRM 326 >gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis HTCC2597] gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis HTCC2597] Length = 166 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ ++ +++ D L RA + Sbjct: 22 MKS--ASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDEMAEGDIDLFRATMAD 79 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + RID + D L + R +L+ L R + A+++ D V+ V+ A Sbjct: 80 AVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSDTPPKVVIKEYVDVASA 139 Query: 114 DKENRHFAKLVNSILRRV 131 + VN++L + Sbjct: 140 FFPEGREPRFVNAVLDHM 157 >gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis ATCC 49957] gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis ATCC 49957] Length = 170 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 11/128 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ--------RDQILVRAIV 53 + +R+ + L + S ++D D L +V Sbjct: 20 RPRTGSRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRVPLADVPLFAGVV 79 Query: 54 NVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQ 110 R +D +L L ++ R L+ LLR + ++ + V++ ++ Sbjct: 80 RGVARQSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEPPARVVINEYMDI 139 Query: 111 AKRDKENR 118 A Sbjct: 140 AHGFFSGE 147 >gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC 23685] gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC 23685] Length = 139 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY + + + D R +++ +D ++ Sbjct: 11 ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDVNYFRELLSGVASNADYLDGLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LRVS+ ++ DV ++ VE AK K VN + Sbjct: 68 PVLSRQLDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSRE 134 L +++ + Sbjct: 127 LDKIAPQ 133 >gi|330834052|ref|YP_004408780.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566191|gb|AEB94296.1| Fmu (Sun) domain-containing protein [Metallosphaera cuprina Ar-4] Length = 356 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 100/303 (33%), Gaps = 30/303 (9%) Query: 148 IPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLN-----AVMLPTGG 202 +P W E+L + L + + + D + L + Sbjct: 67 LPSWMDEQLRYLIDLDNYLKNLVKKKTQWFRVNRILGDEDKVLKSLELQDIEFIRDNDFN 126 Query: 203 IRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGK---TAQL 259 K +I F E +QD ++ V+ VLD+ ++PG K +L Sbjct: 127 YVYKITKGNITKTKEFTENKVILQDKASVAVVEALRPEPGDVVLDMASSPGLKAELIYEL 186 Query: 260 IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI-IEMDAFDYCPKKLFDAVLVDAPCSS 318 + + RL K L L + + + D VL+DAPCSS Sbjct: 187 TQGEISLVLAEFYMHRLSKEMRLLKELGVNPSSLNFIVQDSTSNSIVRVDKVLIDAPCSS 246 Query: 319 TGTIRRHPDVLWTR-DTDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEV 376 +GT+ P VL T + + + Q+ +L + + K G V+S CS+ ++ E + Sbjct: 247 SGTLSDDPTVLITLSTKEKVNLFSRVQKAMLRETFNIRFKKG---VYSVCSIFPEEGEMI 303 Query: 377 VQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 V+++ + + + S R D FF Sbjct: 304 VEEI--------KDRLVKTGLPGSTGYPNFSVGNLCTR--------YFNFIDETDDFFIA 347 Query: 437 ALR 439 + Sbjct: 348 KFK 350 >gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 139 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY + + + D R +++ +D ++ Sbjct: 11 ECAVQALYSWQISK---NDIADVEYQFLSEQDVKDVDISYFRELLSGVATNAEYLDGLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 VL L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PVLSRQLEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium HTCC2255] gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium HTCC2255] Length = 151 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 9/147 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-----QILVRAIVNV 55 MKS +RL + L + + + D L + L ++ Sbjct: 7 MKS--ASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEGEEYVEGNVELFEQLLFT 64 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R +L+ L R + A+ + D + V+ AK Sbjct: 65 AVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFIIDDTPPKVAIVEFVDVAKA 124 Query: 114 DKENRHFAKLVNSILRRVSREKIELLQ 140 + + + VN+IL ++RE Sbjct: 125 FFPDGNETRFVNAILDHMAREVHPDKF 151 >gi|56477452|ref|YP_159041.1| transcription antitermination protein NusB [Aromatoleum aromaticum EbN1] gi|81598767|sp|Q5P3H4|NUSB_AZOSE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|56313495|emb|CAI08140.1| N utilization substance protein B,transcription termination factor [Aromatoleum aromaticum EbN1] Length = 145 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + S +L +E S + D+ L +++ TL + + A Sbjct: 12 EFALQGIYQWLL---SANSMLLIEEHVSQVSGFDKADRELFISLLRGTLNNVDDLQAEFA 68 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + ++ + +L ++ ++ + LD +++ A+E AK + VN + Sbjct: 69 PFIHRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGTDG-HRFVNGV 127 Query: 128 LRR 130 L + Sbjct: 128 LDK 130 >gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii LLAP12] gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii LLAP12] Length = 147 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 43/126 (34%), Gaps = 5/126 (3%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR ++ L + + ++E +S+ D ++ + ++ Sbjct: 11 KARKLALQALYQWFMSG---SEVSEIEAQFRLINNMSKVDVDYFCRLLYGIPEHINELEN 67 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 L + +LR+ ++ + +V V+D A+ K ++ + V Sbjct: 68 SFSPFLDREVHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTKEF-GSQDGYRYV 126 Query: 125 NSILRR 130 N +L Sbjct: 127 NGVLNN 132 >gi|49483774|ref|YP_040998.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus MRSA252] gi|282904107|ref|ZP_06311995.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C160] gi|282905934|ref|ZP_06313789.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus Btn1260] gi|282908844|ref|ZP_06316662.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958289|ref|ZP_06375740.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus A017934/97] gi|295428103|ref|ZP_06820735.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590931|ref|ZP_06949569.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MN8] gi|56749229|sp|Q6GGH4|NUSB_STAAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49241903|emb|CAG40597.1| putative N utilization substance protein B [Staphylococcus aureus subsp. aureus MRSA252] gi|282327108|gb|EFB57403.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331226|gb|EFB60740.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus Btn1260] gi|282595725|gb|EFC00689.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus C160] gi|283790438|gb|EFC29255.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus A017934/97] gi|295128461|gb|EFG58095.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575817|gb|EFH94533.1| transcription antitermination factor NusB [Staphylococcus aureus subsp. aureus MN8] gi|315195426|gb|EFU25813.1| transcription antitermination protein NusB [Staphylococcus aureus subsp. aureus CGS00] Length = 129 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K LT + + L D + +V+ P Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLTINEAISFIKDDNPDL---DFEFIHWLVSGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L ++ R + + +LR++ +IL+ D V++ AVE K+ ++ H+ Sbjct: 59 LDETISPNLKDWTIARLLKTDRIILRMATYEILHSDTPAKVVMNEAVELTKQFSDDDHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037] gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis ATCC 35037] gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis ATCC 49296] gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300] gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis Uo5] gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037] gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis ATCC 35037] gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis ATCC 49296] gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300] gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis Uo5] Length = 140 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTELVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis SK14] gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae C87] gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis SK14] gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae C87] Length = 129 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R+ + L + K L+ + + + L D + +V Sbjct: 2 SRKESRIQAFQTLFQLEMKESDLSITEAINFIKDDYPDL---DFDFINWLVTGVKDHEAV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D L S+ R S + +LR++ ++L+ D + +++ AVE K+ + Sbjct: 59 LDEKFKPYLKDWSIERLLKSDRIILRMATFEMLHSDTPEKVIINEAVELTKQF-SDDGHY 117 Query: 122 KLVNSILRRVSR 133 K +N +L ++ Sbjct: 118 KFINGVLSNINN 129 >gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium violaceum ATCC 12472] gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC 12472] Length = 149 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 44/123 (35%), Gaps = 4/123 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ AR + + L++ ++ + ++ D+ L R+I+ L+ Sbjct: 1 MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEY--FAKADEALFRSILYGVLKD 58 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + + A + + + +L ++ ++ + +++ A+E K Sbjct: 59 VELLSAQVGRYYERAEDEVSPVERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTD 118 Query: 119 HFA 121 Sbjct: 119 GHK 121 >gi|159489346|ref|XP_001702658.1| predicted protein [Chlamydomonas reinhardtii] gi|158280680|gb|EDP06437.1| predicted protein [Chlamydomonas reinhardtii] Length = 367 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 304 KKLFDAVLVDAPCSSTGTIR-RHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVV 362 + +FD VLVDAPCS G ++ PD + + + + QR+LLL+G++ + PGG++V Sbjct: 158 EGVFDRVLVDAPCSGLGRLQLGRPDSYSHWQPEAVRRYSRRQRQLLLRGVTLLAPGGLLV 217 Query: 363 FSNCSLDKQDSEEVVQKVLRS 383 +S C++ +++E+V+ +L Sbjct: 218 YSTCTMLAEENEQVLAWLLGR 238 >gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter radioresistens SK82] gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter radioresistens SH164] gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter radioresistens SK82] gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter radioresistens SH164] Length = 149 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + + + + ++A + D ++ + Sbjct: 10 AAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLGYYHELLTQVVAQHE 66 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 +D +L VL L LR+ ++ +L++ V+D A+E AK Sbjct: 67 ALDTLLVPVLDRELGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADS 125 Query: 121 AKLVNSILRR 130 K +N +L R Sbjct: 126 HKYINGVLDR 135 >gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC 100599] gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC 100599] Length = 137 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 10/133 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR L + + LT + L +S +R +++ L+ L Sbjct: 4 MKRRT-AREKVVQCLFQIDMAEVPLTDAVALVMEESEEN------AQYLRYLLDGVLKNL 56 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA + L L R + +LR++ +I++ D D V++ A+E AK + Sbjct: 57 TEIDAEIKKYLRGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVAK-LFSDE 115 Query: 119 HFAKLVNSILRRV 131 + +N +L Sbjct: 116 QSHRYINGVLSSF 128 >gi|253746079|gb|EET01595.1| tRNA/rRNA cytosine-C5-methylase [Giardia intestinalis ATCC 50581] Length = 458 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 77/434 (17%), Positives = 130/434 (29%), Gaps = 64/434 (14%) Query: 53 VNV-TLRFLPRIDAVLDFVLISSLPRKKYSLQQ--LLRVSVAQILYLDVADYA-----VV 104 V LR L D +L + +L+ +L ++ +L + V Sbjct: 37 VYALALRALGHAD-LLKDTITRLAKANDTTLEHNHVLVMATEALLGDGIPHRRRRLEGVT 95 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 A+ K +L++ + + +P + L+ E Sbjct: 96 RDALRIVKTHM------PEFACLLKKPDTATTKSRSNASAAPYLPRALRVNLDRREYPEI 149 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAEGV 222 ++ + V + ++L T LK+ + S F Sbjct: 150 NDEADRVRLTLEAEEQCVLRVQDQLRNELPPEAKLTRHPILKDFLLVSAPNSKIPFHNLW 209 Query: 223 WWVQDASASIPVQLFGTL--------------NNLSVLDLCAAPGGKTAQLIVSGAKVTA 268 + + + L N+ VLD+CAAPG KT Q + V A Sbjct: 210 VVKTNQAIMQSLASGLPLAALREAAIKLLPSLKNVCVLDVCAAPGSKTFQACNYFSGVHA 269 Query: 269 LDVSKRRLEKLRCNLDRLHLY--------------AEDIIEMDAFDYCPKKLFDAVLVDA 314 D+ +RR E + L +I + ++ D Sbjct: 270 NDLDRRRCEIILKRGKELISTKAVRSTNIVAGLPINSLVITSNDALRLKDTGCQIIVCDP 329 Query: 315 PCSSTGTIRRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCS 367 CSS+G L T+ D + + FQ KLL + K P ++V +S CS Sbjct: 330 TCSSSGVYGNKDSTLAEAAGVTKSHADPAELSSFQIKLLTRL--LTKFPSAVLVSYSTCS 387 Query: 368 LDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 + ++E+VV VL E L +A + P Sbjct: 388 IHSVENEDVVAAVLNDETGISEEWELWNALPEWPMRGKK----------PYTYCLRADKR 437 Query: 428 SGMDGFFAVALRRL 441 DGFF R Sbjct: 438 QQTDGFFTAIFIRK 451 >gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium IMCC1989] gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium IMCC1989] Length = 152 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 5/122 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR L +L + + D+ ++ D +V+ + Sbjct: 11 ATRRKARHFGMQALYQWSMTGAALNEIEAEFHVDN---DMTHTDTDYFHELVHEIPARVT 67 Query: 62 RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D L S+ LLR++ ++ + +DV V++ AV AK+ Sbjct: 68 ELDEAYFPHLQDRSVEELDPVTLSLLRLATYELAHRIDVPYKVVINEAVSLAKKFGATDS 127 Query: 120 FA 121 F Sbjct: 128 FK 129 >gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC 6249] gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC 6249] Length = 140 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTELVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLGQF 135 >gi|45773930|gb|AAS76769.1| At5g66180 [Arabidopsis thaliana] gi|51968870|dbj|BAD43127.1| unnamed protein product [Arabidopsis thaliana] Length = 395 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 47/145 (32%), Gaps = 22/145 (15%) Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356 +D VLVDA C+ G+I+ W Q LL G +K Sbjct: 253 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 312 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G +V+S CSL +E VV + L + K +P +R Sbjct: 313 EAGTLVYSTCSLTHAQNEGVVDQFLSEN---FSAELQEIEMAKDWPCRSGRTP-KTLRFD 368 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P G F +R+L Sbjct: 369 PSTSATS--------GLFVAKIRKL 385 >gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1] gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1] Length = 155 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVR 50 + NAR + + + ++ + + + + D + R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATVEEQFLSGGKYDEEEHHAAEPALTAPETDVVYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVE 109 ++ +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLTGVALNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTSREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS 78-1] gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS 78-1] Length = 139 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R ++ +D ++ Sbjct: 11 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTASLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 142 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 13/139 (9%) Query: 1 MKSGM--------NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI 52 M+ M AR + +L + ++ + + + D I + Sbjct: 1 MRKQMIIKPNFRRKARACALQMLYSWEISQNNIKDSAIEFLKEKNKKNI---DIIYFYEL 57 Query: 53 VNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQA 111 + ID ++ L SL + +LR+S ++ D+ ++ +E A Sbjct: 58 IIGITYNCRSIDDLMKPYLSRSLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELA 117 Query: 112 KRDKENRHFAKLVNSILRR 130 K + K +N +L + Sbjct: 118 K-LFGSEDSHKFINGVLDK 135 >gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205] gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205] Length = 136 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR + +L + +L +V L Sbjct: 1 MPARRKARKRALDVLFEADLRDRPPVEVLAGYVERLEKPRPEH--LGYAVGLVEGIAVHL 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 R+D ++ +L R + L R++V ++LY+D + D + AVE A++ Sbjct: 59 DRLDELIASYAEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAVELARQM-STD 117 Query: 119 HFAKLVNSILRRVSRE 134 + +N IL R++ Sbjct: 118 DSPRFLNGILGRIAEY 133 >gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. zooepidemicus] gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein) [Streptococcus equi subsp. zooepidemicus] Length = 150 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 14/133 (10%) Query: 1 MKSGMN-----ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRA 51 M R + L + L L D + + + Sbjct: 1 MTKRFQHSRRDLRERAFQALFTMEMGGDFL--LASQFAYDYDKEVADDKQPSELPVFLLN 58 Query: 52 IVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAV 108 +VN + +D V+ L S+ R + +LR+ + ++ L+ + D ++ + Sbjct: 59 LVNGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEII 118 Query: 109 EQAKRDKENRHFA 121 E AK+ ++ Sbjct: 119 EIAKKYSDDTSAK 131 >gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004] gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004] Length = 138 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + D+E+ + + ++ D R ++ ++DA++ Sbjct: 11 ECAVQAIYSWQLSK---NDIADVEFQFLSEQDVTGVDITYFRELLTGVAVNAAKLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRV++ ++ + DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex Length = 141 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R ++ +D ++ Sbjct: 13 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 69 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 70 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 128 Query: 128 LRR 130 L + Sbjct: 129 LDK 131 >gi|15807061|ref|NP_295790.1| N-utilization substance protein B [Deinococcus radiodurans R1] gi|22095974|sp|Q9RSQ7|NUSB_DEIRA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|6459861|gb|AAF11617.1|AE002043_2 N-utilization substance protein B [Deinococcus radiodurans R1] Length = 192 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTL 57 + AR +L R + L + G D F L +V Sbjct: 14 TRRAAREFVFRVLFEADRGDVPLQAVFTRAEGVMREGDDTFPQLGPDALHFAEELVTGLE 73 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 R ID VL + + + + +LR++ +++Y V++ AV A++ Sbjct: 74 RHREAIDDVLHRTIRGWTFDQMAQTDLNVLRLATYELMYTPEPHPPVIESAVRIARKFGG 133 Query: 117 NRH 119 + Sbjct: 134 DDS 136 >gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli O157:H7 EDL933] gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. Sakai] gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12 substr. MG1655] gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a str. 301] gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli CFT073] gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a str. 2457T] gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046] gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227] gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae Sd197] gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12 substr. W3110] gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89] gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536] gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5 str. 8401] gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli E24377A] gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS] gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC 8739] gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12 substr. DH10B] gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli SMS-3-5] gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia albertii TW07627] gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC 3083-94] gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4196] gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4113] gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia coli 53638] gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4076] gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4401] gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4486] gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4501] gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC869] gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC508] gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia coli B7A] gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia coli F11] gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia coli E22] gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia coli E110019] gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia coli B171] gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella dysenteriae 1012] gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia coli 101-1] gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. EC4024] gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4206] gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4045] gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4042] gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4115] gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11] gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli O127:H6 str. E2348/69] gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. TW14588] gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1] gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88] gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a] gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989] gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39] gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli UMN026] gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972] gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA] gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952] gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str. REL606] gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. TW14359] gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9] gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp. 4_1_40B] gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli O103:H2 str. 12009] gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli O26:H11 str. 11368] gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli O111:H- str. 11128] gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. FRIK966] gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli O55:H7 str. CB9615] gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412] gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354] gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185] gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088] gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50] gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302] gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS 107-1] gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS 119-7] gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS 198-1] gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS 84-1] gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS 115-1] gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS 182-1] gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS 187-1] gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS 21-1] gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS 116-1] gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS 175-1] gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS 45-1] gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS 200-1] gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS 69-1] gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS 196-1] gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS 185-1] gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS 124-1] gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS 146-1] gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101] gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736] gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W] gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae 1617] gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS 145-7] gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli 2362-75] gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli 1827-70] gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736] gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605] gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718] gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206] gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143] gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271] gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280] gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591] gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299] gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp. D9] gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str. EDL933] gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073] gi|146976|gb|AAA24228.1| nusB [Escherichia coli] gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12] gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli] gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli] gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12 substr. MG1655] gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7 str. Sakai] gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector pNCO113-nusB/nusE] gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str. 301] gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str. 2457T] gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046] gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197] gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227] gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12 substr. W3110] gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89] gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536] gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401] gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia coli HS] gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia coli E24377A] gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739] gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12 substr. DH10B] gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia albertii TW07627] gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia coli SMS-3-5] gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella boydii CDC 3083-94] gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4196] gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4113] gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia coli 53638] gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4076] gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4401] gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4486] gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4501] gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC869] gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC508] gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia coli B7A] gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia coli F11] gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia coli E22] gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia coli E110019] gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia coli B171] gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella dysenteriae 1012] gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia coli 101-1] gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4206] gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4045] gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4042] gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. EC4115] gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli] gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli] gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli] gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli] gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli] gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11] gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli O127:H6 str. E2348/69] gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia coli O157:H7 str. TW14588] gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989] gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1] gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88] gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39] gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a] gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026] gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82] gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA] gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972] gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952] gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE complex [Escherichia coli BL21(DE3)] gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str. REL606] gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli BL21(DE3)] gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7 str. TW14359] gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli O26:H11 str. 11368] gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli O103:H2 str. 12009] gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli O111:H- str. 11128] gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1] gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15] gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017] gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042] gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli O55:H7 str. CB9615] gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088] gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412] gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185] gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354] gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia coli IHE3034] gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302] gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS 196-1] gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS 185-1] gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS 200-1] gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS 175-1] gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS 198-1] gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS 69-1] gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS 84-1] gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS 45-1] gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS 115-1] gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS 182-1] gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS 116-1] gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS 21-1] gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS 187-1] gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS 119-7] gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS 107-1] gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS 124-1] gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS 146-1] gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101] gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W] gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972] gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146] gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS 145-7] gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae 1617] gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407] gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli 1827-70] gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli 2362-75] gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1 str. NRG 857C] gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a str. 2457T] gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W] gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli DH1] gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS 85-1] gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS 110-3] gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS 153-1] gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS 16-3] gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431] gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC 74-1112] gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905] gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC 796-83] gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. EC1212] gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327] gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B] gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. G5101] gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli O157:H- str. 493-89] gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli O157:H- str. H 2687] gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7 str. USDA 5905] gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli O157:H7 str. LSU-61] gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli EPECa14] gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli E128010] gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G] gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68] gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180] gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357] gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli RN587/1] gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11] gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520] gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482] gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120] gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252] gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263] gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489] gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863] gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007] gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli TW10509] gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS 57-2] gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS 60-1] gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS 117-3] gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167] gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. 1044] gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7 str. 1125] gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli STEC_7v] gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86] gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736] gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605] gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718] gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206] gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143] gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271] gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280] gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591] gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299] gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae 155-74] gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82] gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74] gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp. D9] gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli UMNK88] gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri 4343-70] gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri 2747-71] gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671] gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri 2930-71] gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218] gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6] gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272] gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227] gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304] gi|1096319|prf||2111328A NusB protein Length = 139 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R ++ +D ++ Sbjct: 11 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|79332684|ref|NP_001032161.1| unknown protein [Arabidopsis thaliana] gi|332010790|gb|AED98173.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] Length = 374 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 22/145 (15%) Query: 307 FDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDDIVKSACFQRKLLLQGISFVK 356 +D VLVDA C+ G+I+ W Q LL G +K Sbjct: 232 YDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTDTNLKALQLNLLRNGFRLLK 291 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G +V+S CSL +E+VV + L + K +P +R Sbjct: 292 EAGTLVYSTCSLTHAQNEDVVDQFLSEN---FSAELQEIEMAKDWPCRSGRTP-KTLRFD 347 Query: 417 PDMLEKIDGVSSGMDGFFAVALRRL 441 P G F +R+L Sbjct: 348 PSTSATS--------GLFVAKIRKL 364 >gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661] gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661] Length = 139 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + ++ + + + + D R ++ +D ++ Sbjct: 11 ECAVQALYSWQLSKNDISDVEYQFLAE---QDVKDVDISYFRELLVGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+S+ ++ DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPYIRPN 137 >gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563] gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563] Length = 154 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 9/131 (6%) Query: 3 SGMNARLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 + AR+ + L + ++IS+ +LD +Y + R +V T++ L Sbjct: 21 ARRQARIYAVMSLYSYEINERKISINNILDFDYDKKIPENI----FAFTRNLVEGTIKNL 76 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 RID++++ + + R +Y + ++R+S+ +++L D+ V+D AVE AK ++ Sbjct: 77 ERIDSLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEIAK-IFSDK 135 Query: 119 HFAKLVNSILR 129 K VN IL Sbjct: 136 DSYKFVNGILD 146 >gi|158256914|dbj|BAF84430.1| unnamed protein product [Homo sapiens] Length = 384 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 364 VVPNLMANFGP-------MYFCKMRRLT 384 >gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 139 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 9/121 (7%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLRFLPRI 63 R + L + L L D + + + +VN + + Sbjct: 2 RERAFQALFTMEMGGDFL--LASQFAYDYDKEVADDKQPSELPVFLLNLVNGVMDHKAEL 59 Query: 64 DAVLDFVLI--SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHF 120 D V+ L S+ R + +LR+ + ++ L+ + D ++ +E AK+ ++ Sbjct: 60 DEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYSDDTSA 119 Query: 121 A 121 Sbjct: 120 K 120 >gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731] gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731] Length = 139 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 4/123 (3%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S +AR ++ L + S + + + ++D +V Sbjct: 2 SRRDARTIAMRSLFALEFSPEQSPEETVRTMAEEEDIQDTRKKDLAYALDLVKGVRENQE 61 Query: 62 RIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENR 118 +D L+ + +L R + LLR++ ++ V ++ AVE AK + Sbjct: 62 ALDGELNGLDAKWTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVELAKVYGGDD 121 Query: 119 HFA 121 A Sbjct: 122 SPA 124 >gi|220672735|emb|CAX12676.1| novel protein similar to H.sapiens NSUN4, NOL1/NOP2/Sun domain family, member 4 (NSUN4, zgc:101708) [Danio rerio] Length = 393 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 35/284 (12%) Query: 183 KFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLF 237 D + L I +++ DA++ +PV Sbjct: 119 HNDSTDVESAPLQTSITPDIKCLVFPRGDISRFKPARPDSSGILGYYLLDAASVLPVLAL 178 Query: 238 GTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY------ 289 +VLDLCAAPGGKT S + A D+S R +LR L Sbjct: 179 DVRPGQTVLDLCAAPGGKTLALLQAHSVNHLWANDLSVSRTGRLRKILQSYVPKEFLDEE 238 Query: 290 AEDIIEMDAFD--YCPKKLFDAVLVDAPCS---STGTIRRHPDVLWTRDTDDIVKSACFQ 344 I +D + +K FD VLVD PC+ + + + +R + K Q Sbjct: 239 NIHITCIDGRELGMREEKSFDRVLVDVPCTTDRHSAVVEENNIFKRSRTK-ERQKLPLLQ 297 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV-------ELVPLNSAY 397 +LL+ GI + GG++V+S CSL + +E VVQ+ + + + +L + Sbjct: 298 IQLLVAGIQAARQGGLIVYSTCSLSQLQNECVVQQAISVAQEELGITVQVQDLRWFTQRF 357 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + A LS G + + P + + + L+R+ Sbjct: 358 SDTFHFAPQLSV-GEL-VLPHLCANFGPI-------YMCKLQRM 392 >gi|85000949|ref|XP_955193.1| nucleolar protein [Theileria annulata strain Ankara] gi|65303339|emb|CAI75717.1| nucleolar protein, putative [Theileria annulata] Length = 366 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 120/311 (38%), Gaps = 57/311 (18%) Query: 189 WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN-----NL 243 + K+ P + L + + G + DAS++ V Sbjct: 56 YYRKVGDCNFPDDRVVLWLRDVEVYNTTGNIPPSCYGLDASSAAVVDSLRLKRLSSAKEA 115 Query: 244 SVLDLCAAPGGKT---------------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHL 288 VLD+C APGGK +I + + +++ K L+K + DR+ + Sbjct: 116 WVLDMCCAPGGKLFATIDAADKIRSDTKWNIIGLDSSIRRIELCKSMLKKELFDRDRIDV 175 Query: 289 YAEDIIEMDAFDYCPK---KLFDAVLVDAPCSSTGTIR------RHPDVLW---TRDTDD 336 + I + ++ + + FD +++D C+ G++R R + W + + Sbjct: 176 NFKFINSQEFSEFNGESMFEKFDRIILDVECTLEGSLRSVIRTLRFWGIKWLENNWNREY 235 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSE----EVVQKV--LRSSPIPV-- 388 K QR+LL Q I VKPGG +V+S CSLDK+ +E +V+++ ++ P+P+ Sbjct: 236 ASKIIANQRELLTQAIKLVKPGGFIVYSTCSLDKEQNEHLLCDVIKQFQNIKFHPLPIHS 295 Query: 389 ---------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLE--------KIDGVSSGMD 431 E A + + S E + + + + ++ D Sbjct: 296 CSCCSYNSEERQETWPAESCEHILKLKCSDEYFYSVNMNHCNNKNSPSAVRFVPLNGKTD 355 Query: 432 GFFAVALRRLI 442 G F L + I Sbjct: 356 GLFIALLFKTI 366 >gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21] gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21] Length = 140 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 7/138 (5%) Query: 3 SGMNARLVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 S AR ++ L + L + D L + D+ A+V T L Sbjct: 2 SRREARTLAMKSLFSLDFTTDVSPLDTV-KALLEDEDTPALPKDDENYAAALVTGTREHL 60 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKEN 117 ID+VLD + + R + LLR++ ++ + +A + AVE AK + Sbjct: 61 EAIDSVLDTLSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVEIAKIYGGD 120 Query: 118 RHFAKLVNSILRRVSREK 135 +N +L + R Sbjct: 121 DS-PHFINGLLGTLVRNH 137 >gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus luminescens subsp. laumondii TTO1] gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp. laumondii TTO1] Length = 138 Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + S+ + + + ++ D R +++ ++DA++ Sbjct: 11 ECAVQAIYSWQLSGNSIADVELQFLSE---QDVTGVDVTYFRELLSGVAVNAAKLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ Y DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1] gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1] Length = 165 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 8/134 (5%) Query: 1 MKSG--MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M+ G +R ++ +L + L D + DQ + Sbjct: 15 MRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLEDPHSEGM---DQDYFSQLTLGVEA 71 Query: 59 FLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 +D+ + S+ R +LR+ + ++L +V +++ A+E +KR Sbjct: 72 EREVLDSWIGRAGAAWSMDRFSVVDHNILRLGIYELLKQPEVPHRVILNEAIELSKRFGG 131 Query: 117 NRHFAKLVNSILRR 130 ++ VN ++ + Sbjct: 132 EES-SRFVNGVMDK 144 >gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353] gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72] Length = 143 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNVTLRFL 60 R + L + + L++ ++ + D+ + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEETDKAAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius SK126] gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus vestibularis F0396] gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus vestibularis ATCC 49124] gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius SK126] gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus vestibularis F0396] gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus vestibularis ATCC 49124] Length = 144 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S + R + L + +L D ++ D + ++V L Sbjct: 8 SRRDLRERAFQTLFALEFGGEALEQAHFAYTYDKPIDEETEVDVPAFLLSLVTGVREELA 67 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D+ ++ L SL R + + LLR+ + +I + + ++ +E AK+ + Sbjct: 68 QLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIAKKY-SDE 126 Query: 119 HFAKLVNSILRRV 131 AK +N +L + Sbjct: 127 TSAKFINGVLSQF 139 >gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus 525.92] gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus 525.92] Length = 131 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 6/136 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL + D + R ++ Q L + Sbjct: 1 MATRHQVRQAVVSLLYAHEM-GSEMNEFKDEFLEEKKIRN-ERKIQAL--ETFDAICLKK 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D +L L + R +LR+ V ++ + +++ A+E AK Sbjct: 57 GELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIINEAIELAKE-LGGDS 115 Query: 120 FAKLVNSILRRVSREK 135 K +N +L + E Sbjct: 116 APKFINGVLDALKGEM 131 >gi|71027761|ref|XP_763524.1| hypothetical protein [Theileria parva strain Muguga] gi|68350477|gb|EAN31241.1| hypothetical protein, conserved [Theileria parva] Length = 365 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 51/250 (20%) Query: 244 SVLDLCAAPGGKTA--------QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE 295 +LD+C APGGK + + LD S RR+E + L + + I Sbjct: 116 WILDMCCAPGGKLFATIDSADKINSDTKWNIIGLDSSIRRIELCKAMLRKELFNRDKIDV 175 Query: 296 MDAFDYCPKK----------LFDAVLVDAPCSSTGTIR------RHPDVLWTRDTDDIVK 339 + FD +++DA C+ G++R R + W ++ + Sbjct: 176 SFKHINSQEFSEYNGESMLEKFDRIILDAECTLEGSLRSVIRTLRFWGIKWLENSWNREY 235 Query: 340 SACF---QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI-PVELVPLNS 395 ++ QR+LL Q I +KPGG +V+S CSLDK+ +E ++ V+++ P +P++S Sbjct: 236 ASKIITNQRELLTQAIKLLKPGGFIVYSTCSLDKEQNEYLLCDVIKNFPNVKFHPLPVHS 295 Query: 396 ------AYWKSIDMAMALSPEGWIRI-------TPDM----------LEKIDGVSSGMDG 432 Y + + A S + +R+ P + + ++ DG Sbjct: 296 CLCCSYNYGERHETWPAESCDRTLRLKCSRDYFYPVIAGCDNRYSPSAVRFVPLNGITDG 355 Query: 433 FFAVALRRLI 442 F L + I Sbjct: 356 LFIALLFKTI 365 >gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium vanbaalenii PYR-1] gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1] Length = 163 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTLRF 59 AR + LL + I+ + + +A D + Sbjct: 10 RHQARKRAVDLLFEAEARGITAAEVAE---ARNALAEKRTDDIATLNPYTVTVAQGVTAH 66 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID ++ L +L R + +LRV+V ++L+ DV + VD AVE AK+ Sbjct: 67 AAHIDDLISAHLQGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVELAKQ-LST 125 Query: 118 RHFAKLVNSILRRVS 132 VN +L +V Sbjct: 126 DDSPGFVNGVLGQVM 140 >gi|297797769|ref|XP_002866769.1| hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp. lyrata] gi|297312604|gb|EFH43028.1| hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp. lyrata] Length = 392 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 22/169 (13%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRD---------TDD 336 L + + D +D VLVDA C+ G+I+ W Sbjct: 230 GLTKKQLYTSLDQDDYAYCGYDKVLVDAECTHDGSIKHIQKFEQWGWTTLERRVLDAERT 289 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 + Q LL G ++ G +V+S CSL +E+VV + L + + Sbjct: 290 DRNLSALQLNLLRNGFRLLREAGTLVYSTCSLTHAQNEDVVDQFLAENSSAELQEIEMAE 349 Query: 397 YWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQPK 445 W + + + D +S G F +R+L + Sbjct: 350 DWPCRSGRTSKT------------LRFDHSTSATSGLFVAKIRKLPSNE 386 >gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus thermophilum H-6-12] gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus thermophilum H-6-12] Length = 144 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 13/130 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R LL + + F S + Q + + L++ D+++ Sbjct: 9 REKVLQLLFQKDLGQE----------VEVDFSDFSPQGQAFAYRLYDGALQYKDLADSII 58 Query: 68 DFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L R + +LR+++A++ + D+ V+ AVE AK+ + VN Sbjct: 59 SRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAVELAKKYVSPE-AGRFVN 117 Query: 126 SILRRVSREK 135 ILR + R Sbjct: 118 GILRNIVRNW 127 >gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143] gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143] Length = 146 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 14 SRRELRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTELVSGVQAKKEE 71 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 72 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 130 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 131 ARFINGLLSQF 141 >gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex Length = 141 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R ++ +D ++ Sbjct: 13 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 69 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK + K VN + Sbjct: 70 PYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSF-GAENSHKFVNGV 128 Query: 128 LRR 130 L + Sbjct: 129 LDK 131 >gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum LX-11] Length = 139 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR LL ++ + D D+ ++D + ++ + Sbjct: 2 NRTQAREWLVKLLYQYDISKLEPQKIFDKFLEDNDPE--DEKD--YIENTFFGVIKNVDN 57 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID + L + + R ++R S +ILY D+ ++ AVE AK+ + Sbjct: 58 IDEKIKKYLKNWDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIAKKYSTEKSP 117 Query: 121 AKLVNSILRR 130 A +N IL Sbjct: 118 A-FINGILGN 126 >gi|297665065|ref|XP_002810928.1| PREDICTED: putative methyltransferase NSUN4-like [Pongo abelii] Length = 384 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSTSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRLFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + +RRL Sbjct: 364 VIPNLMANFGP-------MYFCKMRRLT 384 >gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae WPP163] gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163] Length = 139 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + + D R ++ ++D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDIAYFRELLAGVATQAEKLDQLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L + + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRHIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|324512401|gb|ADY45138.1| Methyltransferase [Ascaris suum] Length = 473 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 87/240 (36%), Gaps = 27/240 (11%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEK 278 WW+ D + IPV + ++LD+CAAPGGK+ I +G D RL + Sbjct: 239 PSWWLLDGGSIIPVLALDLADGDTLLDMCAAPGGKSLLAIQTGLPEKVVCNDYKLSRLGQ 298 Query: 279 LRCNLDRLHLYAEDI---------IEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVL 329 LR L D+ D + ++D VLVDAPCS+ H + Sbjct: 299 LRRALSTFLPLDSDVADRVILKRKDASDIQRWDEMAVYDKVLVDAPCSTDRLAANHDEGN 358 Query: 330 WTRDTDDIVKS--ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RS 383 + Q KLL+ + V+ GG VV+S C+L +E VV+ + Sbjct: 359 MFAIPMTTERLNLPQLQTKLLINALRSVRVGGSVVYSTCTLSPVQNETVVENAVAIASER 418 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIR---ITPDMLEKIDGVSSGMDGFFAVALRR 440 + + L + E R + P + + L+R Sbjct: 419 FGLKIVEQTLEQLERHLTSSGLFRFGENCRRGSLVVPFLPSNFGP-------MYVCKLQR 471 >gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari RM2100] gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari RM2100] Length = 132 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 6/134 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL + + ++ + R + + N L Sbjct: 1 MATRHQVRQSIVSLLYAAQLNQENKD-FINEFLDEKKIRN---DQRKFTLDLYNGINEQL 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D ++ L L + +LR+ +IL+ +++ A+E AK + + Sbjct: 57 ALLDEKINECLKEHKLDGVASIEKAILRLGAYEILFTSTQKAIIINEAIELAKEMAGD-N 115 Query: 120 FAKLVNSILRRVSR 133 K +N +L ++++ Sbjct: 116 APKFINGVLDKINK 129 >gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium sp. YIT 12067] gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium sp. YIT 12067] Length = 154 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 24/152 (15%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-DQIL----------V 49 M + AR V+ L + + +D + D+ L Sbjct: 1 MIRRL-AREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASA 59 Query: 50 RA--------IVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD--V 98 R +VN + IDA L+ ++ R + + +LRV+V ++ + + Sbjct: 60 RNYVKKYSMVLVNGVVENKEAIDATLNSCATDWTVERMPATDRNILRVAVFEMRHEKPAL 119 Query: 99 ADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 A ++ AVE AK + +N +L + Sbjct: 120 AAGVAINEAVEIAKAY-GTEESPRFINGVLGK 150 >gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 151 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 4/135 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-SAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + + + + D + +V+ ++ Sbjct: 1 MK-RREAREQAFKFLYQIQVQTDDIPAQREYFLRSCRDEFGFEDADISYITGVVDGVIKE 59 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 D + L ++ R +LR+++ +I Y VA + + AV AK+ Sbjct: 60 TAEFDRQISTCLKKWTVDRLPCVDLAILRLALYEIKYEHVAFSIIANEAVLLAKKYSTEE 119 Query: 119 HFAKLVNSILRRVSR 133 + +N IL ++ Sbjct: 120 SRS-YINGILGKLMP 133 >gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 143 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + +L ++ + + + D + ++ Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNI---DIVYFYELIIGITY 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 ID ++ L SL + + +LR+S ++ D+ ++ +E AK + Sbjct: 58 DCKNIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAK-LFGS 116 Query: 118 RHFAKLVNSILRR 130 K +N +L + Sbjct: 117 EDSHKFINGVLDK 129 >gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198] gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198] Length = 130 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR L + + + + R + Q + + L+ L Sbjct: 1 MATRSQAREAVIGFLYAYDIGNLEIRKMAVDILEEKKIRN---KQQSFALDLFDGILKNL 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D + L + + +LR+ +IL + V++ A+E AK Sbjct: 58 DLLDEQITRHLKDWEFKKLGGMERAILRLGAYEILCCQIDKPIVINEAIELAKSY-GEEM 116 Query: 120 FAKLVNSILRR 130 KL+N +L Sbjct: 117 APKLINGVLDS 127 >gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia heliotrinireducens DSM 20476] gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia heliotrinireducens DSM 20476] Length = 183 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 8/130 (6%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L + ++D L+ R ++ + ID + Sbjct: 11 RRAALQVLYESDILGTPVDKVVDEGVV-PEEAALND----YARRLLLGVASHITDIDRQI 65 Query: 68 DFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + R + LLR++V ++ ++D V ++ AVE AK + + + VN Sbjct: 66 SKSSKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAKDFGGDDTY-RFVN 124 Query: 126 SILRRVSREK 135 IL R++R Sbjct: 125 GILGRIARTM 134 >gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis HI4320] gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906] gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320] gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906] Length = 137 Score = 77.2 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + + + + D R ++ R+D ++ Sbjct: 11 ECAVQAIYSWQLSGNDIADVELEFLSEQDTQGV---DIAYFRELLVGVAINAARLDKAME 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ + DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAK-VFGADDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP 69.14] gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP 69.14] Length = 156 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 48/145 (33%), Gaps = 13/145 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----------DQILVR 50 + NAR + + + ++ + + + D R Sbjct: 8 AARRNARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAPQTDVTYFR 67 Query: 51 AIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVE 109 ++ + +D+ L + + LLR+++ ++ DV V++ A+E Sbjct: 68 DLLVGVVLNHTELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127 Query: 110 QAKRDKENRHFAKLVNSILRRVSRE 134 AK K VN +L + + Sbjct: 128 LAK-VFAAEDSHKFVNGVLDKAAPH 151 >gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 143 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + +L ++ + + + D + ++ Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNI---DIVYFYELIIGITY 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 ID ++ L SL + + +LR+S ++ D+ ++ +E AK + Sbjct: 58 DCKNIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAK-LFGS 116 Query: 118 RHFAKLVNSILRR 130 K +N +L + Sbjct: 117 EDSHKFINGVLDK 129 >gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str. Hildenborough] gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4] gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str. Hildenborough] gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4] gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1] Length = 153 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS---AFRLLSQRDQILVRAIVNVTLRF 59 S AR ++ +L + + L Y S A + S + + ++ Sbjct: 8 SRRAARALAFQILYGLGFSPAASVKQLREAYASSPDVADKGRSPQPEGFAWELIEGIWTE 67 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID V+ + + R LLR++V ++LY +DV ++ A+E +K+ + Sbjct: 68 QANIDEVIGLFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAINEALELSKQF-GD 126 Query: 118 RHFAKLVNSILR 129 + +N IL Sbjct: 127 ANARGFINGILD 138 >gi|294941214|ref|XP_002783051.1| hypothetical protein Pmar_PMAR026099 [Perkinsus marinus ATCC 50983] gi|239895270|gb|EER14847.1| hypothetical protein Pmar_PMAR026099 [Perkinsus marinus ATCC 50983] Length = 113 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 44/82 (53%) Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 APCS GT+R+ PD+ + + QR +L + + VK GG++V+S C+L Sbjct: 1 MCDCQAPCSGDGTLRKSPDLWSRWHPNAGLSCHRLQRSILKRTATLVKVGGVIVYSTCAL 60 Query: 369 DKQDSEEVVQKVLRSSPIPVEL 390 + + E VV V+ +S +EL Sbjct: 61 NPIEDEAVVGSVVAASEGALEL 82 >gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA2] gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes HL044PA1] gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA3] gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp. P08] Length = 256 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 51/150 (34%), Gaps = 8/150 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L +L ++ + +V Sbjct: 30 STRSKARKQALDILFEADLMGTDPLEVL----AARPSVFINPV-RPFAADLVRGVAATQA 84 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D+VL L +L R + L R+ +IL+ D + AV+ A+E ++ Sbjct: 85 GLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHTDTPNPAVISEAIELSEEF-STDD 143 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIP 149 A +N +L V ++ + IP Sbjct: 144 SAPFLNGLLSAVISHGPARVEDLPSDDAIP 173 >gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis z3032] gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis z3032] Length = 139 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVMYFRELLSGVATNSGYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPYIRPN 137 >gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150] Length = 143 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 42/123 (34%), Gaps = 13/123 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-------QILVRAIVNVTLRFL 60 R + L + + L++ ++ D + +V+ ++ Sbjct: 13 RQRAFQALMSLEYEG----DLVEACRFAYSYDKDEDADNAAEADIPAFLLNLVSGVVQSK 68 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 69 DDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEK 128 Query: 119 HFA 121 Sbjct: 129 SSK 131 >gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198] gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198] Length = 137 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + + + + D R ++ R+D ++ Sbjct: 11 ECAVQAIYSWQLSGNDIADVELEFLSEQDTQGV---DIAYFRELLVGVAINATRLDKAME 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ + DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAK-VFGADDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2] gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10] gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2] gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10] Length = 142 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 9/139 (6%) Query: 1 MK-SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK RL L R+ L +L+ ++ + + + +R Sbjct: 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIR----GIKE 56 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 LP ID ++ L SL R + +LR++ ++L+ D+ +D A+E AKR Sbjct: 57 NLPMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRY-G 115 Query: 117 NRHFAKLVNSILRRVSREK 135 + K VN IL R+++E Sbjct: 116 TENSGKFVNGILDRIAKEH 134 >gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC 51100] gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC 51100] Length = 145 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 41/123 (33%), Gaps = 4/123 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--DQILVRAIVNVTLRFL 60 S R + L + + ++ D + +V L+ Sbjct: 8 SRRELRQRAFQALMSLEYEGDAIEACRFAYTYDKDEEETDAEVNIPAFLLNLVTGVLQSK 67 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L ++ R + +LR+ + ++ D + V+ A+E +K+ + + Sbjct: 68 EELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEFDTPERVAVNEAIELSKQFSDEK 127 Query: 119 HFA 121 Sbjct: 128 SSK 130 >gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1] gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1] Length = 139 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPAIRPH 137 >gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii ATCC BAA-894] gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894] Length = 139 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVMYFRELLSGVATNSGYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPHIRPN 137 >gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp. (strain APS) gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 143 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 7/133 (5%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + +L ++ + + + D + ++ Sbjct: 1 MKPSFRRKARACALQVLYSWEISHNNIKESAIYFLKEKNKKNI---DIVYFYELIIGITY 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 ID ++ L SL + + +LR+S ++ D+ ++ +E AK + Sbjct: 58 DCKNIDNLMKPYLFRSLKELGHIERAILRISFYELHKRNDIPYKVSINEGIELAK-LFGS 116 Query: 118 RHFAKLVNSILRR 130 K +N +L + Sbjct: 117 EDSHKFINGVLDK 129 >gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii str. 'Deep ecotype'] gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii str. 'Deep ecotype'] Length = 140 Score = 76.9 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + AR ++ + ++S + +E + + + D +A++ Sbjct: 1 MKVSARRKARELALQGVYSW---QMSHNDIQQVELALATSNDMQKVDMAYFQALLRGVAH 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ++DA + L + +LR++ ++ +DV +++ A+E AK Sbjct: 58 NASKLDATIKPYLGRLPEELDAIEKAILRIATLELTERIDVPYRVIINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K +N L + Sbjct: 117 EESHKFINGALDK 129 >gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens] gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris] gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str. Corby] gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99 Alcoy] gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris] gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens] gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str. Corby] gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99 Alcoy] gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b] Length = 147 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + L + L + + + D ++ + ++A Sbjct: 12 ARKFALQALYQWLMSGTDLHEIEAQF---RTINNMDKVDGEYFCRLLYGIPTHVEALEAS 68 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L L + +LR+ ++ + ++ ++D +V K ++ + VN Sbjct: 69 LLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEF-GSQEGYRYVN 127 Query: 126 SILRR 130 +L Sbjct: 128 GVLNN 132 >gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107] gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter gallaeciensis 2.10] gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter gallaeciensis 2.10] gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107] Length = 163 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ ++ +++ D R ++ Sbjct: 19 MKS--ASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGDEMAEGDTKSFRKLIEG 76 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + +ID + D L + R +L+ L R + A+ L V++ V+ A+ Sbjct: 77 AVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFLAGKTPPKVVINEFVDIARA 136 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 137 FFPEGKEPKFVNAVLDHM 154 >gi|260887340|ref|ZP_05898603.1| transcription antitermination factor NusB [Selenomonas sputigena ATCC 35185] gi|260862976|gb|EEX77476.1| transcription antitermination factor NusB [Selenomonas sputigena ATCC 35185] Length = 160 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 10/134 (7%) Query: 3 SGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLS---QRDQILVRAIVNVT 56 S AR + L + + + D+A + +RD ++V T Sbjct: 22 SRRQAREAALQTLFQLELNPPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVRGT 81 Query: 57 LRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKR 113 L ID + L R + ++R+++ ++ Y V ++ AVE AK+ Sbjct: 82 REHLAAIDEEIAASTHDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVELAKK 141 Query: 114 DKENRHFAKLVNSI 127 ++ VN I Sbjct: 142 F-GTDDSSRYVNGI 154 >gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium IMCC3088] gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium IMCC3088] Length = 147 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 5/128 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L S T + D F S D +A+++ ++ I Sbjct: 12 RHKARHYTVQALYRWHMNEQSSTDIEAEFRIDYDF---SHVDLEYFQALLHGVVKTHASI 68 Query: 64 DAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAK 122 DA L+ +L L +LR+ + ++ LDV V++ AV ++ K Sbjct: 69 DAYLEPLLDRKLDDLDAVELAILRMGLFELKERLDVPFKVVINEAVSLTRKFGATDG-HK 127 Query: 123 LVNSILRR 130 +N +L + Sbjct: 128 YINGVLDK 135 >gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1] gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1] Length = 200 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 6/145 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +AR + +L S + + + L + +V I Sbjct: 8 RTSARRAALQVLYTSEITDESPAAIAEGDRRLEEDGPLPE----YALMLVRGVESHRIAI 63 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D L + SL R + +LR++ +++Y DV ++ AVE AK Sbjct: 64 DNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDESH 123 Query: 122 KLVNSILRRVSREKIELLQRIAGIS 146 + VN IL R+++ + A Sbjct: 124 RFVNGILGRIAKMLEGEESQEADAP 148 >gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative [Rhodospirillum centenum SW] gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative [Rhodospirillum centenum SW] Length = 179 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 9/137 (6%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLPRIDAV 66 L + + + + D L IV + +D + Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDGDRYVSADPQLFADIVRGVMARQADVDQL 96 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKL 123 + VL L R + L+ +LR ++L VA + V++ ++ R + Sbjct: 97 VTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGRE-PGM 155 Query: 124 VNSILRRVSREKIELLQ 140 VN +L R++R+ Sbjct: 156 VNGVLDRIARQLRPEEM 172 >gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila RKU-1] gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1] Length = 142 Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 9/139 (6%) Query: 1 MK-SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK RL L R+ L +L+ ++ + + + +R Sbjct: 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIR----GIKE 56 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 LP ID ++ L SL R + +LR++ ++L+ D+ A +D A+E AKR Sbjct: 57 NLPMIDNLISRYLEKWSLNRLSAVDRNVLRLATYELLFEKDIPIEATIDEAIEIAKRY-G 115 Query: 117 NRHFAKLVNSILRRVSREK 135 + K VN IL R+++E Sbjct: 116 TENSGKFVNGILDRIAKEH 134 >gi|325180419|emb|CCA14824.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 503 Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 88/265 (33%), Gaps = 40/265 (15%) Query: 212 IVSLPGFAEGVWWVQDASASIPVQ---LFGTLNNLSVLDLCAAPGGKTAQ---------- 258 + EG +QD ++ P N ++D CAAPG KT+ Sbjct: 196 VYDHDLVKEGKLILQDKASCFPAYVLLSDPAWNGGDIIDACAAPGNKTSHLAMLLDKKAV 255 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLY-AEDIIEMDA----FDYCPKKLFDAVLVD 313 + + +KV A D S RL+ L L D A+L+D Sbjct: 256 GMSTKSKVFAFDRSAARLKILESRLKSCGADGIVLASCQDFLNTDIHDPRYANVKAILLD 315 Query: 314 APCSSTGTIRRHPDV-----LWTRDTDDIVKSACFQRKLLLQGIS----FVKPG------ 358 CS +G R + D+ + +K + S ++ Sbjct: 316 PSCSGSGMNSRFDHLLDIASRPEMTEYDLEQEDGTTQKRIESLASFQLLMLRKAFSFDQV 375 Query: 359 GIVVFSNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRI 415 VV+S CS+ K ++EEVV L + P + +W + + ++ Sbjct: 376 DRVVYSTCSVFKSENEEVVAAALSTQPADKSNRFQLKECLPHWPRRGIPTDVLSSSDAKL 435 Query: 416 TPDMLEKIDGVSSGMDGFFAVALRR 440 + + + G +GFF R Sbjct: 436 L----VRANAIEDGTNGFFVAYFER 456 >gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp. 1_3_56FAA] gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp. 1_3_56FAA] Length = 200 Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 6/145 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +AR + +L S + + + L + +V I Sbjct: 8 RTSARRAALQVLYTSEITDESPAAIAEGDRRLEEDGPLPE----YALMLVRGVESHRIAI 63 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D L + SL R + +LR++ +++Y DV ++ AVE AK Sbjct: 64 DNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDESH 123 Query: 122 KLVNSILRRVSREKIELLQRIAGIS 146 + VN IL R+++ + A Sbjct: 124 RFVNGILGRIAKMLEGEEGQEADAP 148 >gi|313235158|emb|CBY25030.1| unnamed protein product [Oikopleura dioica] Length = 417 Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 53/246 (21%), Positives = 92/246 (37%), Gaps = 23/246 (9%) Query: 206 KELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVS 262 +I L EG +QD ++ +P + +VLD AAPG KT A + Sbjct: 187 FHSSTNIADLFLNKEGYLIIQDRASCLPPFVLAPKEGETVLDCTAAPGNKTHQLASAVGR 246 Query: 263 GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP---KKLFDAVLVDAPCSST 319 KV A + +R L + +L+ + + K D + S + Sbjct: 247 KGKVIACEADPKRFRLLSSRMKQLYAGEIVESKFQDYLKIDVTQKPWSDCTKIMLDPSCS 306 Query: 320 GTIRRHPDVLWTRDTDDIVKS-ACFQRKLLLQGISFVKPGGI-VVFSNCSLDKQDSEEVV 377 G+ H ++ +D + ++S A FQ + LL+ +F P + +S CS +++ EVV Sbjct: 307 GSGMAHRRIMQEQDPKERIESLAKFQEEALLKATTF--PNAKEISYSTCSTHDRENNEVV 364 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVA 437 VL ++ D ++ SS +GFF Sbjct: 365 NAVLANAQSWEVANAFKRVPKFCEDSGTN-------------TLSLEPFSSATNGFFVAL 411 Query: 438 LRRLIQ 443 L+R + Sbjct: 412 LKRKDK 417 >gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis m4-4] Length = 129 Score = 76.5 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 11/132 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + ++S L +S + +V T L Sbjct: 1 MK-RHTAREKALQALFQMDMSQLSGQEALTNVTEESEMDD-------YLSKLVLQTETNL 52 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 ID + L S R + +LR++V ++++ DV + ++ A+E AK + Sbjct: 53 EVIDQKIRENLEKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVAINEAIELAKTF-GDD 111 Query: 119 HFAKLVNSILRR 130 +K +N++L + Sbjct: 112 QSSKFINAVLSK 123 >gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis NCFD 2020] gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis NCFD 2020] Length = 143 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFL 60 S + R + L + L D + D + +VN Sbjct: 7 NSRRDLRERAFQALFNMELGGEFLEASQFAYDYDKIVEEGEKSDVPAFLLNLVNGVNDHK 66 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +D ++ L S+ R S + +LR+ + +I Y + D ++ +E AK+ + Sbjct: 67 VELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEETPDRVALNEIIEIAKKY-SD 125 Query: 118 RHFAKLVNSILRRV 131 AK +N +L + Sbjct: 126 ETSAKFINGLLSQF 139 >gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM 12442] gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17] gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4] gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4] gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17] gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM 12442] Length = 120 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 12 SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + ++ + + ++V + ID + Sbjct: 1 MQALYQMDITGELEPKVAVENTLEEGEETN------EFLESLVVGCVEHKEAIDEAIRQN 54 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L L R + +LR++V ++ Y+ ++ ++ A+E AK + + +N +L Sbjct: 55 LKKWKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113 Query: 129 RR 130 Sbjct: 114 SN 115 >gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri ATCC 29453] gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri ATCC 29453] Length = 156 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR L + + + + F+ D L A+ T Sbjct: 9 SPRRRAREFVVQALYQAALNQKPAPEIANFLREHTDFKR---ADAELFDALFFGTNANQR 65 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ++ L + +L ++ ++ + + V++ A+E K Sbjct: 66 AYMMLIRPHLDRDEKLINPIERAILLMATHELKTMPETPHAVVINEAIEVTKTFGGTDSH 125 Query: 121 A 121 Sbjct: 126 K 126 >gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4] gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4] Length = 152 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 7/130 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + +L ++ LL G ++ +V R Sbjct: 16 SRRQARRRAVEMLYEAAQRSADPVTLLADRVGAVEVDPVAD----YTITVVEGVTAHRER 71 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID +L +L R +LRV V ++L+ DV D +D AV AK Sbjct: 72 IDELLAEHSQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAVGLAKE-LSTDDS 130 Query: 121 AKLVNSILRR 130 + VN +L R Sbjct: 131 PRFVNGVLGR 140 >gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius str. 'morsitans'] gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str. 'morsitans'] Length = 139 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + D+E A + S D R + +D ++ Sbjct: 11 ECAVQALYSWQLSH---NDIADIEVQFLAEQDTSDVDVAYFRDLYAGAATNAQELDKLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + + +LR+++ ++ DV ++ A+E AK K +N + Sbjct: 68 PYLSRQLEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTF-GAEESHKFINGV 126 Query: 128 LRRVSREKIEL 138 L +V+ + Sbjct: 127 LDKVAPQIRPN 137 >gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243] gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243] Length = 195 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 +AR + +L S + + L + +V I Sbjct: 8 RTSARRAALQVLYTSEITDESPAAIAEGNSRLDEDGPLPE----YALKLVLGVESHRCAI 63 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D L + SL R + +LR++ +++Y DV ++ AVE AK Sbjct: 64 DNHLAATSENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTINEAVELAKDFGGEDESH 123 Query: 122 KLVNSILRRVSREKIELLQRIAGISIIPEWFKE 154 + VN IL R+++ A PE + Sbjct: 124 RFVNGILGRIAKMLEGEEDEGAESEGDPEVPAD 156 >gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae NTUH-K2044] gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3] gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3] Length = 139 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPVIRPH 137 >gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae 7-10-1-b] Length = 160 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 6/129 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL T + + + L A+V I Sbjct: 8 RTRARRSALALLYTSEITDEGATKIAEEGRYLAEDGPLPD----YATALVRGVEAHRVAI 63 Query: 64 DAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D L + L R + +LR++ +++Y DV ++ AVE AK Sbjct: 64 DKHLAATSENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAVELAKDFGGEDESP 123 Query: 122 KLVNSILRR 130 + VN +L R Sbjct: 124 RFVNGVLGR 132 >gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC 700641] gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC 700641] Length = 142 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 2/120 (1%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S + R + L + + + D + +V+ + Sbjct: 8 SRRDLRERAFQALMSLEYEGDVVEACRFAFTHDKEETDQEVEIPAFLLNLVSGVRQSKDE 67 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + +LR+ V +I D V+ A+E AK + + Sbjct: 68 LDKQIAQHLKTGWTVERLTLVEKNILRLGVFEITSFDTPQLVAVNEAIELAKTFSDEKSA 127 >gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans ASO3-1] gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans ASO3-1] Length = 157 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 3/137 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + +L + + L + + Q+D ++N L Sbjct: 13 SRHAQREFAFQVLYSLHFDQTGTHILDTFHHFKNDQDTAVQQDMSYALQLINGVRENLEE 72 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA + + + R ++R++V +++Y D+ ++ A+E AK + + Sbjct: 73 LDAAIGRHSQNWKVKRIAMVELTIMRLAVYEMIYREDIPVKVGINEAIELAKTF-GDNNS 131 Query: 121 AKLVNSILRRVSREKIE 137 VN IL V+R+ Sbjct: 132 RNFVNGILDAVARDMRH 148 >gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis MCE9] gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis MCE9] Length = 144 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 + AR + L + S +D + D L + + ++ Sbjct: 8 SARHTARELVVQGLYSWLLSNESQDIASVDSHIRE--QENFDFADLNLYKTSLYGVIQNA 65 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119 + + S ++ ++ ++L + + V++ A+E AK Sbjct: 66 DSLREEFAPFISRSASELSPVEHAIMLLATYELLHFPETPYRVVINEAIELAKEFGGTDG 125 Query: 120 FA 121 F Sbjct: 126 FK 127 >gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter hongkongensis HLHK9] gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9] Length = 165 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + + ++ + + F + D+ L R ++ L Sbjct: 1 MKTPRRRAREFAVQGIYQWQLNALTPATIEKNLRDNEQFA---KADEALFRTLLYGVLND 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 RI++ + + + +L ++ ++ + +++ A+E AK Sbjct: 58 PVRIESAIASHFERAPEDVSPVERAVLLMAAFELTQQAETPLAVIINEAIEIAKTFGGAE 117 Query: 119 HFAKLVNSILRRV 131 + VN +L + Sbjct: 118 G-HRFVNGVLDKY 129 >gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas acidaminovorans] gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas acidaminovorans] Length = 153 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 15/132 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRK------------RISLTCLLDLEYGDSAFRLLSQRDQIL 48 M AR ++ L + LL ++ + Sbjct: 1 MGQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLS--LAEAEHIQPNSPVYAF 58 Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 +V T+ + ++++ +D + + L + +L ++ ++L+ D V++ A Sbjct: 59 ADELVKNTIINIEQVESEIDKLSDNWELEDIALLDRSILCLAAYELLFTDTPAPVVINEA 118 Query: 108 VEQAKRDKENRH 119 +E AK+ Sbjct: 119 IEIAKKFSSEAS 130 >gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT] gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT] Length = 154 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 47/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +S +R + + + + + ++ D F + D R ++ + Sbjct: 14 RSRRKSRELVLKGIYLGLMNQKDTSVIIRELADDPDF---DRADYEYFRQLLEGVAESID 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA L +L + +L ++ ++++ + ++ VE AK Sbjct: 71 ELDARLAGLLDRQVSELSPIEHAILCIAAYELIHDVTIPYRVAINEGVELAKLYGGTDG- 129 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 130 HKYVNGVLDK 139 >gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica] Length = 139 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + D+E + + ++ D R +++ ++DA++ Sbjct: 11 ECAVQAIYSWQLSG---NDIADVELQFLSEQDVTGVDVTYFRELLSGVAVNAVKLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRV++ ++ Y DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium atrosepticum SCRI1043] gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum SCRI1043] Length = 139 Score = 76.5 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + + D R ++ ++D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L + + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRRIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|73977892|ref|XP_853047.1| PREDICTED: similar to NOL1/NOP2/Sun domain family 4 protein [Canis familiaris] Length = 384 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 98/261 (37%), Gaps = 29/261 (11%) Query: 204 RLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + P G +++ DA++ +PV G +VLDLCAAPGGKT Sbjct: 131 CFTFARGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLA 190 Query: 259 LIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------D 308 L+ +G + A D+S R +L+ L + + D Sbjct: 191 LLQTGCCRNLAANDLSTSRTGRLQRVLRSYVPQDIRDRNRVRVTSWDGRKWGELEGDTYD 250 Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 VLVD PC++ ++ + Q +LL G+ KPGG +V+S C Sbjct: 251 RVLVDVPCTTDRHSLREEENNIFQRSRKKERQMLPMLQVQLLAAGLLATKPGGHIVYSTC 310 Query: 367 SLDKQDSEEVVQ---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLE 421 SL +E VVQ + L I V++ L +D + S + + P++L Sbjct: 311 SLSHLQNEYVVQGTIEFLANQYSIKVQVEDLTHFRKLFMDTFSFFPSCQVGELVIPNLLA 370 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + RL Sbjct: 371 NFGP-------MYFCKMCRLT 384 >gi|296273814|ref|YP_003656445.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299] gi|296097988|gb|ADG93938.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299] Length = 132 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR LL + +D D R + + + N + Sbjct: 1 MATRTQARESVIGLLYAYDLGNEGIVKFVDEILEDKKIRN---KQKEFALNLFNGVVNNY 57 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 I+ + L + + +LR+++ +IL+ + +++ A+E +KR + Sbjct: 58 ALINEHIALHLKQGTIKDIGSVEKSILRLAIYEILFETLDRAIIINEAIELSKR-LASDG 116 Query: 120 FAKLVNSILRR 130 K +N +L + Sbjct: 117 APKFINGVLDK 127 >gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 150 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVMG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10750] gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes MGAS10750] Length = 156 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 13 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVMG 68 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 69 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 129 KY-SDETSAKFINGLLSQY 146 >gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes NZ131] gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes NZ131] Length = 150 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS5005] gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005] Length = 150 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS6180] gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS9429] gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS2096] gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180] gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429] gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096] Length = 156 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 13 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 68 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 69 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 129 KY-SDETSAKFINGLLSQY 146 >gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS8232] gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS315] gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes str. Manfredo] gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes MGAS8232] gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes MGAS315] gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pyogenes str. Manfredo] Length = 150 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae bacterium D16] gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae bacterium D16] Length = 164 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 14/148 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLL-----------SQRDQILVRA 51 + AR ++ HL+ + S +LD E F L +++ + +R Sbjct: 2 TRSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERFEELGGESQLYAQFPNEKQERYIRD 61 Query: 52 IVNVTLRFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVE 109 +V P +D + + S R +LR ++ ++LY+ D+ + A +D AVE Sbjct: 62 LVRGVFAHGPELDDYIARYAVGWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDAAVE 121 Query: 110 QAKRDKENRHFAKLVNSILRRVSREKIE 137 K+ + + A VN IL R + Sbjct: 122 MTKKYE-PQEVAAFVNGILGTFVRTEFP 148 >gi|281351945|gb|EFB27529.1| hypothetical protein PANDA_008148 [Ailuropoda melanoleuca] Length = 353 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 98/261 (37%), Gaps = 29/261 (11%) Query: 204 RLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + P G +++ DA++ +PV G +VLDLCAAPGGKT Sbjct: 100 CFTFARGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLA 159 Query: 259 LIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------D 308 L+ +G + A D+S R +L+ L + + D Sbjct: 160 LLQTGCCRNLAANDLSTSRTGRLQRVLHSYVPQDIRDRNRVRVTSWDGRKWGELEGDTYD 219 Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 VLVD PC++ +V + Q +LL G+ KPGG VV+S C Sbjct: 220 RVLVDVPCTTDRHSLHEEENNVFQRSRKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTC 279 Query: 367 SLDKQDSEEVVQ---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLE 421 SL +E VVQ + L I V++ L+ +D + S + P++L Sbjct: 280 SLSHLQNEYVVQGTIEFLANQYSIKVQVEDLSHFRKLFMDTFSFFPSCLVGELVIPNLLA 339 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + RL Sbjct: 340 NFGP-------MYFCKMCRLT 353 >gi|62739650|gb|AAH93978.1| NSUN5B protein [Homo sapiens] gi|193785183|dbj|BAG54336.1| unnamed protein product [Homo sapiens] gi|193785881|dbj|BAG54668.1| unnamed protein product [Homo sapiens] Length = 117 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A FQ++ L ++F ++ +V+S CSL ++++E++V L+ +P L Sbjct: 15 SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRL 71 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P A ++ E +R +P GFF + R+ P Sbjct: 72 APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116 >gi|21552770|gb|AAM62318.1|AF416610_1 Williams-Beuren Syndrome critical region protein 20 copy B [Homo sapiens] Length = 154 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A FQ++ L ++F ++ +V+S CSL ++++E++V L+ +P L Sbjct: 15 SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRL 71 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P A ++ E +R +P GFF + R+ P Sbjct: 72 APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116 >gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041] gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041] Length = 136 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + +L ++ + R L VR + Sbjct: 1 MSLTRHALREEAFQVLFA-LQTNPEADLATIYRSIPHHDERALPD----YVRQLATGVSE 55 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 +D + +L ++ R + +LR+++ ++ Y+D V ++ A+E AK Sbjct: 56 RQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVAINEALELAKEFS 115 Query: 116 ENRHFAKLVNSILRRVSREKI 136 ++ +N L R +E Sbjct: 116 SDQSRK-FINGALGRFEKENN 135 >gi|328855456|gb|EGG04582.1| hypothetical protein MELLADRAFT_88623 [Melampsora larici-populina 98AG31] Length = 359 Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 62/284 (21%), Positives = 102/284 (35%), Gaps = 22/284 (7%) Query: 178 IDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQL- 236 I ++ A + + +I +L + +G QD ++ +P QL Sbjct: 25 IHFDDFIQRAEDKQQVFARDVHLTCVLALPRTVNINTLAPYLDGRLIAQDKASCMPAQLL 84 Query: 237 ------FGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALDVSKRRLEKLRCNLDRLH 287 + + V+D AAPG KT L + + KV A + R E L+ + + Sbjct: 85 LGSPTPEESKRRMCVIDATAAPGNKTTMLSALVGTSGKVWAFEKDPERFETLKSMVAKAG 144 Query: 288 LYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRH---PDVLWTRDTDDIVKS 340 + I D + +L+D C +G+ + RD I Sbjct: 145 CRNVECILGDFLSVKTNDPRFHDVTHILLDPSCCMSGSGISNRLDHLDGSKRDEGRINSL 204 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVELVPLNSAY 397 A FQ +L + F K V +S CS+ +++ EEVV +VL S +L L A Sbjct: 205 ARFQTTILSHALRF-KSVVQVAYSTCSIWREEDEEVVFRVLAKPEMSKKGWQLKDLTDAL 263 Query: 398 WKSIDMAMALSPEGWI-RITPDMLEKIDGVSSGMDGFFAVALRR 440 P + + D + + D GFFA R Sbjct: 264 KPGKPWKRLGRPRSDAEKASTDRMVRFDPKLDTTIGFFAAVFIR 307 >gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222] gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222] Length = 166 Score = 76.1 bits (185), Expect = 9e-12, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 9/132 (6%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQ-------RDQILVRAIVNVTLRFLP 61 L + L + S + R DQ L IV+ + + Sbjct: 26 LYAVQALFQMEAAGQSADRVQREFLNWRIGREDEDDDIVSAEADQALFTRIVDDAVTWQS 85 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +ID + D L + R L+ + R + A+++ V+ V A+ Sbjct: 86 KIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELVTPKTPPKVVITEYVRLAQTFFAEGR 145 Query: 120 FAKLVNSILRRV 131 +K VN++L + Sbjct: 146 ESKFVNAVLDHM 157 >gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii str. Challis substr. CH1] gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii str. Challis substr. CH1] Length = 137 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 4/122 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S + R + L + + D + + +VN ++ Sbjct: 4 SRRDLRERAFQALMSLEYDGDIVEACRFAYLHDKEEEEQVELPI-FLLNLVNGVMQSKSE 62 Query: 63 IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRH 119 +D + L S L R + +LR+ + ++L Y + V+ A+E AK+ + + Sbjct: 63 LDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAKKFSDEKS 122 Query: 120 FA 121 Sbjct: 123 SK 124 >gi|291398978|ref|XP_002715170.1| PREDICTED: NOL1/NOP2/Sun domain family 4 protein [Oryctolagus cuniculus] Length = 382 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 22/235 (9%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRR---LE 277 +++ DA++ +PV G +VLDLCAAPGGKT L+ +G + A D+S R L+ Sbjct: 155 YYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRLQ 214 Query: 278 KLRCNLDRLHLYA---EDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332 K+ + + + + +D VLVD PC++ ++ Sbjct: 215 KVLHSYVPQGIRDRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRS 274 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLR-SSPIPV 388 + Q +LL G+ KPGG VV+S CSL +E VVQ ++L I V Sbjct: 275 RKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGTMELLANQYSIEV 334 Query: 389 ELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 ++ L + +D S + P+++ + +RRL Sbjct: 335 QVEDLTHFRKRFMDTFCFFPSCRVGELVIPNLMANFGP-------MYFCKMRRLT 382 >gi|198417836|ref|XP_002124670.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4 (predicted) [Ciona intestinalis] Length = 422 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 101/282 (35%), Gaps = 30/282 (10%) Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLN 241 + + E V E+ S+ + ++ DA + +PV Sbjct: 147 MMKEYEELQKVCYGVRAYVYNKGDITEFENPHSIKESSLLPSFLLDAGSLLPVLSLDPQP 206 Query: 242 NLSVLDLCAAPGGKTAQLIV---SGAKVTALDVSKRRLEKLRCNLDRLHLY--------A 290 S+LD+C+APGGK ++ ++ A D++ +R+ +++ Sbjct: 207 GDSILDMCSAPGGKLNVMMQAIGDSGRIVANDINTKRVTRVKNVYKEYIPKQFSVEKFVK 266 Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSST----GTIRRHPDVLWT-RDTDDIVKSACFQR 345 + + + +D VLVD PC++ R D +++ + + Q Sbjct: 267 IVKFDATQWTEIETEAYDKVLVDVPCTNDRHSLYVSDRETDNIFSTLRKRERAQLPHLQC 326 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS----SPIPVELVPLNSAYWKSI 401 +LL I +P G +V+S C+ +E VVQ ++ I E+ + Sbjct: 327 QLLKNAILACRPNGTIVYSTCTASPLQNEFVVQYAVQELMDQHSISCEVQNTRTLVDLLK 386 Query: 402 DMAMALSPE--GWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 D L+ G + + P + + LRRL Sbjct: 387 DEFYFLTSTSLGEL-VIPKLDANFGP-------MYFCKLRRL 420 >gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2] gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44] gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2] gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44] Length = 178 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + R +LD++ + D + A++ + Sbjct: 33 SNRSRAREFALQGLYQHIVGR---NAVLDIDRFTRDLAGFHKADVVHYDALLRGCVENEA 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA++ L L + + V + DV V++ +E AK Sbjct: 90 ALDALITPKLDRGLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAKEFGGTDGH 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|84998526|ref|XP_953984.1| hypothetical protein [Theileria annulata] gi|65304982|emb|CAI73307.1| hypothetical protein, conserved [Theileria annulata] Length = 409 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 8/156 (5%) Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQ 350 + D + FD +L+DAPCSS + + +I +++ Q KLL Sbjct: 257 VNYDATDPNKFQRFGKFDKILIDAPCSSERHLINKNL---SWSFKNIKENSKRQLKLLQT 313 Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--PVELVPLNSAYWKSIDMAMALS 408 IS +K GG +++ C+LD ++E V+ +L++ V++ + +I+ + Sbjct: 314 AISLLKSGGTILYCTCALDPIENELVINTILKNYDDIKHVQINYNDLINNININNLKIME 373 Query: 409 PEGWIRITPD---MLEKIDGVSSGMDGFFAVALRRL 441 + + P+ I S + L++L Sbjct: 374 STDYNKFKPEKRTHGCSIMPDKSEFGPLYIAKLQKL 409 >gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC 19061] gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC 19061] Length = 138 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + ++S + D+E + + ++ D R +++ ++DA++ Sbjct: 11 ECAVQAIYSW---QLSNNSIADIELEFLSEQDVTGVDITYFRELLSGVAVNATKLDALMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LRV++ ++ + DV ++ +E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae 342] gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22] gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55] gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae 342] gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22] gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55] Length = 139 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSH---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|125561302|gb|EAZ06750.1| hypothetical protein OsI_28994 [Oryza sativa Indica Group] Length = 222 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 286 LHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345 ++ FD VL+DAPCS+ G R + + A +QR Sbjct: 96 PGRNNCSGGRVENSKGFLPNSFDRVLLDAPCSALGL--RPRLFAGEETLESLRNHATYQR 153 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 ++ Q + V+PGG++V+S C+++ ++E +V+ L Sbjct: 154 RMFDQAVKLVRPGGVIVYSTCTINPGENEALVRYALDKYKF 194 >gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima MSB8] gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21 gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21 gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121 gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1 gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2 gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221 gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221 gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8] gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector pNCO113-TM-nusB] Length = 142 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 9/139 (6%) Query: 1 MK-SGMNARLVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK RL L R+ L +L+ ++ + + + +R Sbjct: 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIR----GIKE 56 Query: 59 FLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKE 116 L ID ++ L SL R + +LR++ ++L+ D+ +D A+E AKR Sbjct: 57 NLSMIDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRY-G 115 Query: 117 NRHFAKLVNSILRRVSREK 135 + K VN IL R+++E Sbjct: 116 TENSGKFVNGILDRIAKEH 134 >gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei F0415] gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei F0415] Length = 139 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 11/139 (7%) Query: 1 MK-SGMNARLVSSHLLSCVMRKR----ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV 55 M S N R + + + + + + L + +V Sbjct: 1 MTESRHNLRERAFQAIFSLEFGQADFLQAANFAYSYDKQGQEGEELEVP--AFLLNLVKG 58 Query: 56 TLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112 T+ L ID ++ L L R + + LLR+ + +I Y + ++ +E K Sbjct: 59 TVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVIELTK 118 Query: 113 RDKENRHFAKLVNSILRRV 131 ++ AK +N IL + Sbjct: 119 AY-SDQTSAKFINGILTKF 136 >gi|118602517|ref|YP_903732.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567456|gb|ABL02261.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 140 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 43/125 (34%), Gaps = 6/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R L + + ++ ++ + +S + + L+ +D + Sbjct: 10 SRERVVQALYQYLVSGGEI-LQIEQQFLNQKQGKIS---KAFFSNLFINILKNKSLLDEI 65 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + + + +L + ++ + V V++ ++E AK KL+N Sbjct: 66 IAPTINRETEQLGAVEHAILYLGAFELKFSPGVPYKIVINESLELAK-LYGAEGAHKLIN 124 Query: 126 SILRR 130 L + Sbjct: 125 VSLDK 129 >gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 150 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + +++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10270] gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes MGAS10270] Length = 156 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + +++ D + ++V Sbjct: 13 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTREDAQVLELPIFLLSLVTG 68 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 69 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 129 KY-SDETSAKFINGLLSQY 146 >gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115] Length = 143 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 5/119 (4%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRID 64 R + L + + + D + + +V+ ++ +D Sbjct: 13 RQRAFQALMSLEYEGDLVEACRFAYSYDKDEEACKAAEADIPAFLLNLVSGVVQSKDDLD 72 Query: 65 AVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + L + R + +LR+ + +I D V+ A+E +K+ + + Sbjct: 73 KKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFDTPQLVAVNEAIELSKQFSDEKSSK 131 >gi|238924571|ref|YP_002938087.1| NusB antitermination factor [Eubacterium rectale ATCC 33656] gi|259514834|sp|C4ZCZ0|NUSB_EUBR3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238876246|gb|ACR75953.1| NusB antitermination factor [Eubacterium rectale ATCC 33656] Length = 131 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 3/121 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R +L V S +E + + ++ + + + + Sbjct: 2 TRSKIRENVFKMLFRVEFHDKS-ELAEQMELLNDELTNPTDEERQYIDEKCSAIIEHMAE 60 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA++D R ++R++V +I + D+ ++ AVE AK+ + Sbjct: 61 LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120 Query: 121 A 121 A Sbjct: 121 A 121 >gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium HTCC5015] gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium HTCC5015] Length = 188 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 6/141 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS----AFRLLSQRDQILVRAIVNVTLR 58 + R L + + L+ Y D + D +A ++ + Sbjct: 47 ARRKTRQRILQALYQCYFNPLPSSKLVQQFYDDEVGEEEGNDMFGVDADFFQAALSTCVD 106 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ++D + L + R +LR++V ++ LDV V++ AVE AK Sbjct: 107 KTEQLDELYCAHLKMPIDRLDPVELCILRLAVFELSERLDVPRRVVINEAVELAKSY-GA 165 Query: 118 RHFAKLVNSILRRVSREKIEL 138 K +N ++ + +R+ Sbjct: 166 EDGHKFINGVIDKTARDLRPH 186 >gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1] gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1] Length = 142 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR + ++ V + L + + + D ++ L +V T+ L +D Sbjct: 10 KAREHACLIMYQVDVGNLPLKEVTENYWSDFGKEKEEIKE--LSEYLVKKTIEHLEEVDR 67 Query: 66 VLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAK 122 + L + R + +LRV+ +IL ++ AV++ AVE AK E+ K Sbjct: 68 AIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVINDAVEIAKSYGEDEKSPK 127 Query: 123 LVNSILRR 130 +N+IL + Sbjct: 128 FINAILDK 135 >gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC BAA-895] gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2] gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC 29220] gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895] gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2] gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC 29220] gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 139 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779] gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779] Length = 146 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 9/132 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R + L + + L ++ D F S + IVN I Sbjct: 10 RHRVRAAALQALFELDQTTHDLDSVVARISDDEMF---SAEGRDFFARIVNGAWVNRQEI 66 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY----LDVADYAVVDLAVEQAKRDKENR 118 D ++ + + + +LR+++ +ILY AV++ AVE AK + Sbjct: 67 DDLIAKIAPSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVINEAVELAK-HFGSD 125 Query: 119 HFAKLVNSILRR 130 + + VN +L Sbjct: 126 NSGRFVNGVLST 137 >gi|325114541|emb|CBZ50097.1| gk24670, related [Neospora caninum Liverpool] Length = 620 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 42/240 (17%) Query: 215 LPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT------------------ 256 L + + D +++ +LDLCAAPGGK+ Sbjct: 282 LETLEKEKVYYLDGASAFAACTLRVSPGDRILDLCAAPGGKSLVLASMLFSSTSSPPVSG 341 Query: 257 ------AQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK------ 304 Q + + S+ R+E+L+ L + Sbjct: 342 SVPPSQKQKSRDAGLLVCNEASRPRMERLQKVLHTFLPPEIFNKRLVQVTCASGTKGGSY 401 Query: 305 ---KLFDAVLVDAPCSST-GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI 360 + FD +LVDAPCSS +++ L + + A Q +LL + ++ GG+ Sbjct: 402 ERFRPFDKILVDAPCSSDRHLLKQGRSALASWASGVPKTHAERQLQLLKGALGLLRVGGV 461 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIR--ITPD 418 +++S C+L + ++E+VV+K+L+S V+ +PL +D S G+ R + P Sbjct: 462 LLYSTCALSEVENEKVVEKLLKSCGGSVKEIPL------LVDPVRPASASGFSRVAVLPH 515 >gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 142 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 5/134 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60 S + R + L + L D + + +V Sbjct: 7 NSRRDLRERAFQALFSLEFGGEYLQAAEFAYTYDKTVEEDEEVQVPVFLLNLVKGVCDLQ 66 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +D ++ L SL R + + LLR+ + ++ Y + V+ +E AK+ + Sbjct: 67 SELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNEIIEIAKKY-SD 125 Query: 118 RHFAKLVNSILRRV 131 AK VN +L + Sbjct: 126 ETSAKFVNGLLSQF 139 >gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis biprosthecum C19] gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis biprosthecum C19] Length = 173 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 8/119 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQILVRAIVNVTLRFLP 61 ARLV L + + ++ L+Q D+ +R Sbjct: 36 ARLVLVQALYQMEITGTGVETVVREFADHRFDTDLEGEPLAQADEAFFGEGARAVVREQG 95 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID ++ L L R +++ +LR ++ + D+ V++ VE A+ Sbjct: 96 VIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVEIARAFFGE 154 >gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14018] gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14019] gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis ATCC 14019] Length = 176 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + + L K ++ LL+ + + I+ Sbjct: 1 MA-RSTARKRALNTLYEADEKNQNILSLLEERLKEPGAQTPLPD---YAVDIIRGVGERR 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 RID L+ + R + +LR++V +IL D V D +D A+ AK ++ Sbjct: 57 NRIDKTLNRYSTGWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAISLAKMYSDDD 116 Query: 119 HFA 121 A Sbjct: 117 AIA 119 >gi|316973969|gb|EFV57510.1| putative methyltransferase NSUN6 [Trichinella spiralis] Length = 336 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 26/176 (14%) Query: 214 SLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVTALD 270 L G E + Q+ + I + +LDLCAAPGGKT + A+V A+D Sbjct: 175 KLYGIVEDWGFPQNLPSIICTHVLNPQPGEVILDLCAAPGGKTTHIATLTKDQARVVAVD 234 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLW 330 +RL++L+ N +L+L + + DA + + T Sbjct: 235 DCSKRLQELKENAKKLNLKSIEPNLADAVKLVGMRKGIIKSFNIENKLEITFSDKVP--- 291 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 + +KPGG +V+S C+L+K ++E +V L P Sbjct: 292 --------------------AVRLLKPGGTLVYSTCTLNKDENEGIVLWALEEFPE 327 >gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes MGAS10394] gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes MGAS10394] Length = 156 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 13 NSRRDLRERAFQALFNIETGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 68 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 69 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 128 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 129 KY-SDETSAKFINGLLSQY 146 >gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes ATCC 10782] gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes ATCC 10782] Length = 150 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIETGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E AK Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEVAK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150] gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150] Length = 144 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S + R + L + L D ++ D + ++V L Sbjct: 8 SRRDLRERAFQTLFALEFGGEVLEQAHFAYTFDKPIGEETEVDVPAFLLSLVTGVREELA 67 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D+ ++ L SL R + + LLR+ + +I + + ++ +E AK+ + Sbjct: 68 QLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIEIAKKY-SDE 126 Query: 119 HFAKLVNSILRRV 131 AK +N +L + Sbjct: 127 TSAKFINGVLSQF 139 >gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella bacilliformis KC583] gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis KC583] Length = 154 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + D RAI+ Sbjct: 12 NKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDGDQYLDADFQWFRAIIAGV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 +R ++D +L L SL R L+ +LR + +++ +V +++ V+ AK Sbjct: 72 VRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVPVAVIINEYVDIAKA 131 Query: 114 DKENRHFAKLVNSILRR 130 KLVN++L Sbjct: 132 FF-EDGEPKLVNAVLDN 147 >gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 140 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR LL + +L+ + + + ++ + + + Sbjct: 2 NRTQAREWLVKLLYQFDVSKSEPPDILNRFFESND----PEEEKDYIEKTFYGIVENVNN 57 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID + L + + R ++R S +ILY D+ + ++ AVE AK+ + Sbjct: 58 IDDRIKKYLKNWDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIAKKYSTEKSP 117 Query: 121 A 121 + Sbjct: 118 S 118 >gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1] gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1] Length = 178 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + L + R +LD++ + D + A++ + Sbjct: 33 SNRSRAREFALQGLYQHIVGR---NAVLDIDRFTRDLAGFHKADVVHYDALLRGCVENEV 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +DA++ L L + + V + DV V++ +E AK Sbjct: 90 SLDALITPKLDRGLTEISPIEHACMWIGVYEFQNCPDVPWRVVLNECIELAKEFGGTDGH 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212] gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212] Length = 166 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + + FR + ++ ++ L+ + ++ + Sbjct: 26 AREFVLQGIYQWRTAGGTTNFIEQQLRESEEFRHVDEK---HFTHVLQGALQQVDELEKI 82 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L SL +L +S ++++ ++ A+++ A+E A+ + K VN Sbjct: 83 IRPCLDRSLDELSPVEFAILLLSTFELIHHPEIPYRAILNEAIELARTYGGSDG-HKYVN 141 Query: 126 SILRR 130 +L + Sbjct: 142 GVLDK 146 >gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 154 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 47/127 (37%), Gaps = 13/127 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVN 54 S ++R ++ +L + L + ++ D+ ++ Sbjct: 8 SSRRSSRALAFQVLYGLNFS--PAKDL--AQLQEAYCASPDVSDRGGEAHPVGFAWELIE 63 Query: 55 VTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112 T +D ++ + + R +LR++V ++LY DV ++ +E +K Sbjct: 64 GTWTNQKALDEIITRFAQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIELSK 123 Query: 113 RDKENRH 119 + +++ Sbjct: 124 QFGDDKS 130 >gi|145349809|ref|XP_001419320.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579551|gb|ABO97613.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 265 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 35/73 (47%) Query: 309 AVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL 368 VL D PCS GTIR+ D L Q + + +KPGG +V+S C+ Sbjct: 97 HVLADVPCSGDGTIRKDADALVRWHPGIGNALHSTQLAVARRCAQLLKPGGSMVYSTCTF 156 Query: 369 DKQDSEEVVQKVL 381 + + E VVQ +L Sbjct: 157 NPIEDEAVVQTLL 169 >gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168] gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168] Length = 139 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVMYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|260804499|ref|XP_002597125.1| hypothetical protein BRAFLDRAFT_279290 [Branchiostoma floridae] gi|229282388|gb|EEN53137.1| hypothetical protein BRAFLDRAFT_279290 [Branchiostoma floridae] Length = 380 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 88/238 (36%), Gaps = 26/238 (10%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK---VTALDVSKRRLEKL 279 ++ DA++ +PV + VLD+CA PGGKT ++ + + A + RL++L Sbjct: 149 YYAMDAASVLPVLALNLNSGDIVLDMCAGPGGKTLAILNTSVSLSGIIANEPKSSRLKRL 208 Query: 280 RCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCS---STGTIRRHPDV 328 L + + + D VLVD PC+ + T ++ Sbjct: 209 NQVLRLYLQRGLSVQKGVKVTSFDGCRWGKVSANSFDRVLVDVPCTTDRHSLTHDEKTNI 268 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS-SPIP 387 + + Q KLL ++ V+PGG VV+S C++ + +E VV + + Sbjct: 269 FHVARARERTELTDLQVKLLSSALAAVRPGGEVVYSTCTMSQMQNEGVVYMAMEHANQNS 328 Query: 388 VELVPLNSAYWKSIDMAMALS-PEGWI---RITPDMLEKIDGVSSGMDGFFAVALRRL 441 L + + EG + P + + LRR+ Sbjct: 329 NILAEVADVSGLVQFFRNTFTFSEGCRIGALVLPSLPNNWGP-------MYFCRLRRI 379 >gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 139 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + + D R ++ ++D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L + + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQIEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728] gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728] Length = 147 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 3/122 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + +L ++ + +L+ + +V+ +L Sbjct: 11 ARRKARKRAVDVLYEAEQRDEPIRRVLEDRRKLAVTDPQMPGIPEYTFELVDGVAEYLDE 70 Query: 63 IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D V+ L S L R + +LRV+ ++ Y DV + AV+ A+ Sbjct: 71 VDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAEVLCGEDS 130 Query: 120 FA 121 A Sbjct: 131 PA 132 >gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1] gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1] Length = 168 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 5/137 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + S + + ++ Sbjct: 1 MKTYRRRIREKIIQALYTIELTGADMDSA-SDWLITPQIAEDSGAVR-FYKQVLQSIQDH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A++LY D+ ++ A+E AK+ Sbjct: 59 KEEIDGYITKHTFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINEAIEIAKKFNST 118 Query: 118 RHFAKLVNSILRRVSRE 134 +K VN IL + Sbjct: 119 DKSSKFVNGILDATYND 135 >gi|193787651|dbj|BAG52857.1| unnamed protein product [Homo sapiens] Length = 117 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 + A FQ++ L ++F ++ +V+S CSL ++++E++V L+ +P L Sbjct: 15 SPVRLHALAGFQQRALCHALTFPSLQ---RLVYSMCSLCQEENEDMVPDALQQNPGAFRL 71 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 P A ++ E +R +P GFF + R+ P Sbjct: 72 APALPARPH-RGLSTFPGAEHCLRASPKTTLSG--------GFFVAVIERVEMP 116 >gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia denticolens F0305] gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia denticolens DSM 10105] gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia denticolens F0305] gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia denticolens DSM 10105] Length = 209 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + + L K + LLD + + IV Sbjct: 3 RARTTARKRALNTLYEADEKGEEIVDLLDERLAYPGAQTPLP---PYAQEIVRGVASHRR 59 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D L+ + R + + R++ +I+Y DV +D A+ AK ++ Sbjct: 60 TVDKALEEHSEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEALTLAKAYSDDE 118 >gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N] gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N] Length = 156 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 2/115 (1%) Query: 9 LVSSHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 + + + R +++ S+ D + +++ LR P + Sbjct: 16 EFALQGVYAWLLRGGQDTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPTLREHF 75 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + L +L + ++++ +V ++ AVE AK F Sbjct: 76 TPYIDRPLAELSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFGGTDGFK 130 >gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3] Length = 156 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 60/144 (41%), Gaps = 9/144 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + I + ++ + + D R+IV Sbjct: 14 NKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDIDGSQYLDADFQWFRSIVVGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ++ ++D +L L +L R +L+ +LR + +++ DV +++ V+ AK Sbjct: 74 VKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAVIMNEYVDIAKA 133 Query: 114 DKENRHFAKLVNSILRRVSREKIE 137 + +LVN++L +++E + Sbjct: 134 FF-ESNEPRLVNAVLDSIAKEMCQ 156 >gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 139 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY + + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSQ---NDIADVEYQFLSEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPAIRPH 137 >gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae RM3277] gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae RM3277] Length = 131 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 6/130 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL S + + + + L ++ + L Sbjct: 1 MATRHQVRQAVVSLLYAREMGSCSE----EFVEEFLEEKKIRNDQRSLALSLFHGILEHE 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +DA+L+ L + + +LR+ ++ + +++ +E K Sbjct: 57 DELDALLNARLKEWKINEIGSIERAVLRLGAYEMKFTPTDKAVIINEGIELGKE-LGGDS 115 Query: 120 FAKLVNSILR 129 K +N +L Sbjct: 116 APKFINGVLD 125 >gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 142 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR S H+L V + + + + + + + ++ + Sbjct: 1 MGTRRKARECSLHMLYAVDNCNVPIESIYNSF---AVYFPKGEAYRMFALDLFKGVCDNK 57 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D+++ + + R + ++R++ +I+ ++ ++D AVE +K+ + Sbjct: 58 EDLDSLIKQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVEISKKY-STK 116 Query: 119 HFAKLVNSILRR 130 +K VN IL + Sbjct: 117 DSSKFVNGILDK 128 >gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis Ellin345] gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis Ellin345] Length = 146 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 45/119 (37%), Gaps = 4/119 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R ++ +L + + S + + + L + + + +V + Sbjct: 7 TRRKSRELALQMLFQMDMGKQSADHVEKTFWAERK--DLEEEVRSFAIDLFHVAEKRSEE 64 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRH 119 ID +++ + R + +LR + A+ + + V++ ++E A+R Sbjct: 65 IDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIARRFSSPES 123 >gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum subsp. pallidum str. Nichols] gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum subsp. pallidum SS14] gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp. pallidum SS14] gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum subsp. pallidum str. Chicago] Length = 141 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 4/126 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR+++ L I+ L S +D R + TL L ID Sbjct: 13 ARILAFQALFAWDAAGITPET-LTQFTWLRRNPPPSTQDLGFSRLLFLGTLEHLREIDGC 71 Query: 67 LDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L R + +LR+S +L+ D+ V+ AV A RD + V Sbjct: 72 VSSRLEHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIA-RDFGTDDSFRFV 130 Query: 125 NSILRR 130 N +L Sbjct: 131 NGVLDN 136 >gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2] gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2] Length = 1011 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + +L + L+ S +++ R +V+ + +D V+ Sbjct: 2 ALQVLFHLEYSD---DDPLEACRLISENFEMAEASVAFSRDLVSGVCQRKTILDRVIGRS 58 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L R + +LR++ ++LYL D+ +D AVE KR + + +N +L Sbjct: 59 SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDEAVELGKRF-GSEDSGRYINGVL 117 Query: 129 RRVSR 133 + Sbjct: 118 DNIFN 122 >gi|332219865|ref|XP_003259078.1| PREDICTED: putative methyltransferase NSUN4 [Nomascus leucogenys] Length = 384 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 62/268 (23%), Positives = 98/268 (36%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSTSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTADRHSLHEEENNIFKRSRKKERQMLPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + + V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSMQVQVEDLTHFRRLFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ V + +RRL Sbjct: 364 VIPNLMANFGPV-------YFCKMRRLT 384 >gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis ATCC BAA-1200] gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis ATCC BAA-1200] Length = 142 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L S + S + + D L A+ Sbjct: 1 MKTSPRRRAREFAVQALYQCALNGASAVQVAQNIREASDY---PRADGELFTALFFGAHD 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + +L + +L ++ ++ + + +++ A+E K Sbjct: 58 NGGEYMQRIRPLLDRDEKDINPVERAILLMACHELAAMPETPYPVIINEAIEVTKTYGGT 117 Query: 118 RHFAKLVNSILRR 130 K VN IL R Sbjct: 118 DS-HKFVNGILDR 129 >gi|329744628|ref|NP_001178310.1| putative methyltransferase NSUN4 [Bos taurus] gi|297473231|ref|XP_002686463.1| PREDICTED: NOP2/Sun domain family, member 4 [Bos taurus] gi|148887182|sp|Q0V8R7|NSUN4_BOVIN RecName: Full=Putative methyltransferase NSUN4; AltName: Full=NOL1/NOP2/Sun domain family member 4 gi|296488956|gb|DAA31069.1| NOP2/Sun domain family, member 4 [Bos taurus] Length = 384 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 105/301 (34%), Gaps = 29/301 (9%) Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-- 221 L D ++ + +T A + + P G Sbjct: 91 EQLKARDFVNEAVFHREPEPENSQTAAPSPASWACSPNLRCFTFTRGDVSRFPPARLGSL 150 Query: 222 ---VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRL 276 +++ DA++ +PV G +VLDLCAAPGGKT L+ +G + A D+S R Sbjct: 151 GLMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRT 210 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHP 326 +L+ L + + D VLVD PC++ Sbjct: 211 SRLQRVLHSYVPQDVRDKNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEEN 270 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---- 382 + + Q +LL G+ KPGG +V+S CSL +E VVQ + Sbjct: 271 SIFQRSRKKERQMLPVLQVQLLAAGLLATKPGGHIVYSTCSLSHLQNEYVVQGAIELLDN 330 Query: 383 SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I V++ L ++ + S + + P+++ + + R+ Sbjct: 331 QYSIKVQVEDLTHFRKLFMNTFSFFPSCQVGELVIPNLMANFGP-------MYFCKMCRM 383 Query: 442 I 442 Sbjct: 384 T 384 >gi|294887533|ref|XP_002772153.1| ribosomal RNA small subunit methyltransferase B, putative [Perkinsus marinus ATCC 50983] gi|239876099|gb|EER03969.1| ribosomal RNA small subunit methyltransferase B, putative [Perkinsus marinus ATCC 50983] Length = 402 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 99/320 (30%), Gaps = 71/320 (22%) Query: 188 TWAHKLNAVMLPTGG-IRLKELPESIVSLPGFAEGVWWVQDASASIPVQ----LFGTLNN 242 W L A + L + G + D S++ V G Sbjct: 85 EWLEPLTAARFGPSPKFYSIPTATQMSRLNLYKGGRLFGLDVSSASAVFALLGESGPEAG 144 Query: 243 LSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFD 300 +VLDLC APG K + G++V +DVS+ RL R L + + ++ D Sbjct: 145 SAVLDLCCAPGTKLLMLSELCPGSRVAGIDVSRDRLMVCRSLLTKYGAHNVELYHGDGRY 204 Query: 301 YCPKKL-----------------------------------FDAVLVDAPCSSTGTIRRH 325 C + + +D VL DA C+ G+++ Sbjct: 205 VCSRPMERLTVAKRKSRGRKRQRRGSPEDPPPSSTTLEAESWDLVLCDAECTHDGSVKHM 264 Query: 326 PDV--------------LWTRDTDDIVKSA--------CFQRKLLLQGISFVKPGGIVVF 363 + QR L+ +KPGG +V+ Sbjct: 265 LKHLEASSRDSSGVVGFWQQQSERSHPMPWLDNLDELESLQRALITAAFDALKPGGCMVY 324 Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI---RITPDML 420 S CS+ ++ E +V+ +L L PL K A + G R P Sbjct: 325 STCSMARRQDENIVEYLLV-HKDAAALCPLPFELAKMPCRATMMDNTGAACACRFDPADA 383 Query: 421 EKIDGVSSGMDGFFAVALRR 440 + + G F +R+ Sbjct: 384 DVARVDAG---GLFIARIRK 400 >gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 139 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + + D R ++ ++D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L + + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQIEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus HTCC2516] gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus HTCC2516] Length = 156 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNVT 56 K +RL + L + + S+ ++ +++ D RA+ Sbjct: 11 KMRSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGASYEEGEMAEGDLETFRALCETA 70 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + +ID + D L + R +L+ L R + A+ + D V+ V+ A+ Sbjct: 71 VDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFIRRDTPPKVVITEFVDIARAF 130 Query: 115 KENRHFAKLVNSILRRV 131 VN++L + Sbjct: 131 FPEGREPSFVNAVLDHM 147 >gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC 2665] Length = 125 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 8/124 (6%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 +L ++ +++ + + ++ + +V + R+D L Sbjct: 1 MEILFEAEQRGSTVSEGIRTRRESTDLQVN-----AYTQRLVEGVIADQERLDEALSSYS 55 Query: 72 I-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 SL R + +LRV ++L+ DV D + AV A + VN +L Sbjct: 56 RGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALA-AQLSTDDSPEFVNGLLG 114 Query: 130 RVSR 133 R+ + Sbjct: 115 RLQQ 118 >gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus RS-1] gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus RS-1] Length = 159 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 6/132 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI---LVRAIVNVTLRF 59 S AR + L + + + L + + D +V R Sbjct: 12 SRRKARKQAFEFLYGLSFEPAADERSLLRLFKRCPHDVAEGEDDAGHEFAWELVLGVWRN 71 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 IDA + + + R +LR++V +IL D+ ++ A+E +KR + Sbjct: 72 QRDIDATIVRFSKNWKISRIAKVELTILRLAVHEILSRPDIPLRVSLNEAIELSKRY-GD 130 Query: 118 RHFAKLVNSILR 129 + +N IL Sbjct: 131 ENSRNFINGILD 142 >gi|114556344|ref|XP_001161301.1| PREDICTED: fatty acid amide hydrolase isoform 2 [Pan troglodytes] Length = 849 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 19/240 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 VV+S CSL +E VVQ L ++ ++ L+S ++ + + ++P Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQNPDLDSEALLALPLPQLVQKLHSRELSP 363 >gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 139 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+E+ + + + D R ++ ++D ++ Sbjct: 11 ECAVQALYSWQLSK---NDIADVEHQFLSEQDVKDVDITYFRELLAGVATQAEKLDQLMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L + + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PFLSRQIEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAK-VFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|110331769|gb|ABG66990.1| NOL1/NOP2/Sun domain family 4 protein [Bos taurus] Length = 375 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 105/301 (34%), Gaps = 29/301 (9%) Query: 164 RVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG-- 221 L D ++ + +T A + + P G Sbjct: 82 EQLKARDFVNEAVFHREPEPENSQTAAPSPASWACSPNLRCFTFTRGDVSRFPPARLGSL 141 Query: 222 ---VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALDVSKRRL 276 +++ DA++ +PV G +VLDLCAAPGGKT L+ +G + A D+S R Sbjct: 142 GLMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRT 201 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--GTIRRHP 326 +L+ L + + D VLVD PC++ Sbjct: 202 SRLQRVLHSYVPQDVRDKNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEEN 261 Query: 327 DVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---- 382 + + Q +LL G+ KPGG +V+S CSL +E VVQ + Sbjct: 262 SIFQRSRKKERQMLPVLQVQLLAAGLLATKPGGHIVYSTCSLSHLQNEYVVQGAIELLDN 321 Query: 383 SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 I V++ L ++ + S + + P+++ + + R+ Sbjct: 322 QYSIKVQVEDLTHFRKLFMNTFSFFPSCQVGELVIPNLMANFGP-------MYFCKMCRM 374 Query: 442 I 442 Sbjct: 375 T 375 >gi|315043808|ref|XP_003171280.1| hypothetical protein MGYG_07281 [Arthroderma gypseum CBS 118893] gi|311345069|gb|EFR04272.1| hypothetical protein MGYG_07281 [Arthroderma gypseum CBS 118893] Length = 532 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 78/481 (16%), Positives = 141/481 (29%), Gaps = 99/481 (20%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106 + A++ ++ I V+D I + K + LL V + +A + + Sbjct: 34 AQIYALIVEVAKYNECITEVIDSAGILAHEPKLTPILSLLLVYDFLLSKRGIAAPS--NH 91 Query: 107 AVEQAKRDKENRHFAKLVN-----SILRRVSREKIELLQRIAGISIIPEWFKERLENFYG 161 + A ++R A+L + ++ L + A + P W R+ N Sbjct: 92 PLRLAVERHKSRINAELTKLRIRRGCASKEELKQKLLQDKQATETFSPRWI--RINNALT 149 Query: 162 KERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEG 221 + S L+ + K + + I S P + EG Sbjct: 150 RLDREMGSTFAGYGPVSSLSELAEATADEKKKYYLDEHIPDLLAISRDIDITSSPAYKEG 209 Query: 222 VWWVQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQ--------LIVSGAKVTAL 269 +QD ++ P L + ++D CAAPG KT ++ +L Sbjct: 210 RLILQDKASCFPAYLLLGDHPEQWDGDLIDGCAAPGNKTTHLASLLSSTARKQKKRIFSL 269 Query: 270 DVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIR 323 D S+ R + L+ + + + +D CS +G + Sbjct: 270 DASRSRSKILQTMVKKAGADDMVTVMPGQDFLALDPTDTRFQHVTALLLDPSCSGSGITK 329 Query: 324 RHPD----------------------VLWTRDTDDI-----------------------V 338 R V + + Sbjct: 330 REDVPQLSLPKSKSELASTTTSGCKGVKNRKRKRETPVDASSTANPPTTGEKEDGSERLA 389 Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPL 393 K A Q +++ SF V +S CS+ ++++E+VV +VL + +EL Sbjct: 390 KLANLQSQIVEHAFSFPAAT-RVTYSTCSIHQEENEDVVARVLASSVSQRRGWRLELRSE 448 Query: 394 NSAYWKSIDMAMALSP--------------EGWIRITPDMLEKIDGVSSGMDGFFAVALR 439 + + LS E IR P G GFF Sbjct: 449 QARGLQKWHHRGILSGDSLESLPLLSSDQVEACIRCWP-------AGDEGTGGFFVAIFV 501 Query: 440 R 440 R Sbjct: 502 R 502 >gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii ATCC 27126] Length = 140 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + AR ++ + ++S + +E + + + D +A++ Sbjct: 1 MKVSARRKARELALQGVYSW---QMSHNDIQQVELALATSNDMQKVDMAYFQALLRGVAH 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 ++D + L + +LR++ ++ +DV +++ A+E AK Sbjct: 58 NASKLDTTIKPYLGRLPEELDAIEKAILRIATLELTERIDVPYRVIINEAIELAKAF-GA 116 Query: 118 RHFAKLVNSILRR 130 K +N L + Sbjct: 117 EESHKFINGALDK 129 >gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168] gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168] Length = 134 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 4/132 (3%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK + R+ + +L + + ++ + + + IV + Sbjct: 1 MKITRHQERVWALQILYSLDISSELNIQKARKTCREFKYKKVLDKKRYYFEDIVEGVINS 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D++++ + + R + +LR+++ +I + +D AVE AK D + Sbjct: 61 RQDLDSIINKYAIDWDVERMACIDRNILRIALYEI-ESGLPVGVAIDEAVEIAK-DFGDS 118 Query: 119 HFAKLVNSILRR 130 + K +N IL + Sbjct: 119 NSPKFINGILAK 130 >gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 182 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + + L + + G+ + LSQ + + +++ L Sbjct: 3 KKRSQARRHAVQAIYQWQMAGQDLAAIYEQFLGE---QDLSQFEVPYFKDLLHGVPNNLQ 59 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVA 91 +D +L L ++ + +LR+ V Sbjct: 60 ELDGLLKPALDRAIESVDPVERAVLRLGVY 89 >gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus degradans 2-40] gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40] Length = 150 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 1 MKSGMNAR----LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK AR + L +L + + D+ +S+ D I++ Sbjct: 1 MKVSAAARGRARHFAMQALYQWEMSGNALHVIEAEFHTDN---DMSKVDVEYFHEILHGV 57 Query: 57 LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRD 114 +D L L +LR + + +DV V++ AV AK+ Sbjct: 58 AAIKSTLDETFKPFLTGLRLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAKKF 117 Query: 115 KENRHFAKLVNSILRR 130 K +N +L + Sbjct: 118 -GAADSHKFINGVLDK 132 >gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS] gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS] Length = 164 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 5/138 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + + ++ +R Sbjct: 1 MKTYRRQLREKIIQALYTLELRDVDTDSAANWLLTKEIMD--DPNAMKFFNHLMQSIVRN 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A+ILY D+ ++ A+E AK+ Sbjct: 59 REEIDRYIAKHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFSST 118 Query: 118 RHFAKLVNSILRRVSREK 135 +K VN IL + + Sbjct: 119 DKSSKFVNGILDAIFNDM 136 >gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii ATCC 35469] gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC 35469] gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii B253] gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii ECD227] Length = 139 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L R + D+EY A + + D + R ++ +D ++ Sbjct: 11 ECAVQALYSWQLSR---NDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|114556346|ref|XP_513142.2| PREDICTED: fatty acid amide hydrolase isoform 3 [Pan troglodytes] Length = 833 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 92/240 (38%), Gaps = 19/240 (7%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEGV-----WWVQDASASIPVQLFGTLNNLSVLDLCAA 251 I P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITP 417 VV+S CSL +E VVQ L ++ ++ L+S ++ + + ++P Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQNPDLDSEALLALPLPQLVQKLHSRELSP 363 >gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein) [Planococcus donghaensis MPA1U2] gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein) [Planococcus donghaensis MPA1U2] Length = 129 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 12/135 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + L + +++ +D +V T + Sbjct: 1 MK-RHEAREKALQTLFQLEGTELTINEAMDHVMAGENDN--------FYDLLVQGTYTNM 51 Query: 61 PRIDA-VLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID ++D + S+ R + +LR+++ ++ Y+ D V++ A+E K + Sbjct: 52 ATIDEKLVDHLENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEAIELCKTF-GDD 110 Query: 119 HFAKLVNSILRRVSR 133 ++ VN +L + + Sbjct: 111 KSSRFVNGVLSKFTD 125 >gi|145615605|ref|XP_360347.2| hypothetical protein MGG_05721 [Magnaporthe oryzae 70-15] gi|145022415|gb|EDK06435.1| hypothetical protein MGG_05721 [Magnaporthe oryzae 70-15] Length = 557 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 3/99 (3%) Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAYWKSI 401 Q LL + F + +S CS+ +++E VV + L+ +P ++ + Sbjct: 421 QATLLEHAMKF-PSAKRITYSTCSIHAEENEGVVLRTLKRNPGWRIMKREEQVDGMQRWP 479 Query: 402 DMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG I + G G+ GFF A R Sbjct: 480 VRGEVQFCEGDKEIAEGCIRAYKGDGHGVMGFFVAAFVR 518 >gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 168 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 2/122 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + LL + + ++D+ +A Q A Sbjct: 9 KGRHQARKRAVDLLFEAEARGLGPAEVVDVRATLAAANPDVAPLQPYTVAAARGVGEHAA 68 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L +L R + +LRV+V ++LY DV + VD AV+ AK + Sbjct: 69 HIDDLISSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVQLAKELSTDES 128 Query: 120 FA 121 A Sbjct: 129 PA 130 >gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus ATCC 9812] gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus ATCC 9812] Length = 142 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 5/134 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFL 60 S + R + L + R L D + +V Sbjct: 7 NSRRDLRERAFQALFSLEFDREYLAAAEFAYTYDKTIEEDEDVQVPVFLLNLVKGVCDMQ 66 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 +D ++ L SL R + + LLR+ + ++ Y + V+ +E AK+ + Sbjct: 67 AELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEIIEIAKKY-SD 125 Query: 118 RHFAKLVNSILRRV 131 AK VN +L + Sbjct: 126 ETSAKFVNGLLSQF 139 >gi|325069060|ref|ZP_08127733.1| Fmu (Sun) domain protein [Actinomyces oris K20] Length = 101 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 11/103 (10%) Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ---KVLRSSPIPVELVPLNSAY 397 A QR+LL + V+ GG+V + CS ++ VV+ ++L + E + Sbjct: 5 AELQRELLASALRAVRRGGVVTYVTCSPHALETTLVVRDVTRLLEREGLHTEPLHAGDVA 64 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + A S +++ P + G D F LRR Sbjct: 65 TRLAPHPPAGSDREALQLWPHL--------DGTDAMFCALLRR 99 >gi|313680543|ref|YP_004058282.1| nusb antitermination factor [Oceanithermus profundus DSM 14977] gi|313153258|gb|ADR37109.1| NusB antitermination factor [Oceanithermus profundus DSM 14977] Length = 142 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 6/120 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ AR ++ +L ++ + L L + + R +V R Sbjct: 1 MRRR--ARELAFKVLFEHLQGDVPLEEA---WRHALEGEELDEEGRAFARRLVEGFARRA 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D +L + + + +LR++ ++LY D ++++AV+ A + Sbjct: 56 AEVDRILAETVEGWDFGQMSKTDLAVLRLATYEMLYEDTPFAPLIEVAVKIAGKYGGEDS 115 >gi|225849626|ref|YP_002729860.1| transcription antitermination protein NusB [Persephonella marina EX-H1] gi|254772650|sp|C0QT45|NUSB_PERMH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225645609|gb|ACO03795.1| transcription antitermination factor NusB [Persephonella marina EX-H1] Length = 142 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 3/137 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + L K L +++ D + LS++ + +I+ LP Sbjct: 3 KYRKKAREIVFRTLYTYDIKGGDLFEIMEDHIKDIRGK-LSKKTVDYIYSILKGIDEHLP 61 Query: 62 RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVD-LAVEQAKRDKENRH 119 ID +L L + L R Y + LLR+ V ++L+ D+ D V ++ K +N Sbjct: 62 EIDDILRENLKNWRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDILDLTKCYIDNPD 121 Query: 120 FAKLVNSILRRVSREKI 136 K +N +L V + + Sbjct: 122 TVKFINGVLSTVYKNRQ 138 >gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638] gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638] Length = 139 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + D+EY A + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSQ---NDIADVEYQFLAEQDVKDVDVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRLLEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans SSM1] gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans SSM1] Length = 139 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 56/138 (40%), Gaps = 5/138 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK AR + +L L+ + + +++ ++L + + + Sbjct: 1 MKLKSIAREKAFKMLYQAEMTNFKPDRLIKQFWELDEEK--NEKVKLLANKLFRLVIDKK 58 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 D ++ L + R +++ LR+ +A++ + YA++D AK+ + + Sbjct: 59 GYADDIISKYLKEGWTFERLTETVKNTLRLGIAELFNTETPVYAILDEYTTLAKKYE-DE 117 Query: 119 HFAKLVNSILRRVSREKI 136 A VN +L ++ ++ Sbjct: 118 KAASFVNGVLEKIRKDFN 135 >gi|298369791|ref|ZP_06981107.1| transcription antitermination factor NusB [Neisseria sp. oral taxon 014 str. F0314] gi|298281251|gb|EFI22740.1| transcription antitermination factor NusB [Neisseria sp. oral taxon 014 str. F0314] Length = 142 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 6/132 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ L I + F + D+ L +V T Sbjct: 1 MKTPRRRARELAVQALYQAAVNNIPAAEAAKNIREMAEF---GKADEGLFNKLVIGTADN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L ++ ++ + + +++ A+E K Sbjct: 58 AAAYMQQIRPLLDRDEKDLSPIERAVLLMACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL R Sbjct: 118 G-HKFVNGILDR 128 >gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis HTCC2601] gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp. HTCC2601] Length = 163 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 10/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVN 54 MKS +RL + L + +++ + + + D L I + Sbjct: 18 MKS--ASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGVEMVEGDVTLFGKITS 75 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + + +ID + D L + R +L+ L R + A+++ D V+ VE A Sbjct: 76 SAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVDSDTPPKVVISEYVEVAS 135 Query: 113 RDKENRHFAKLVNSILRRV 131 + VN++L + Sbjct: 136 AFFPEGREPRFVNAVLDHM 154 >gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624] gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624] Length = 149 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + ++A + D ++ + +DA+L V Sbjct: 19 AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLSYYHELLTQVIAQHEDLDALLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L + LR+ ++ +L++ V+D A+E AK K +N +L Sbjct: 76 LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus SB] gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus SB] Length = 161 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 57/149 (38%), Gaps = 6/149 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ AR ++ +L + + ++L + + + + ++ + Sbjct: 12 MRQRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDA---RPFSSLLIEGAWKHR 68 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 +ID+++ + S+ R + +LR++V ++ + D+ ++ A++ K + Sbjct: 69 DQIDSLIGGCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAIDLGK-VYGSE 127 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISI 147 + +N IL + + + Sbjct: 128 NSGSFINGILDALYAKIHKKNDEQEIAPP 156 >gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM 17241] gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM 17241] Length = 161 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 8/123 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +R + L+ K S+ +++ ++ + + L Sbjct: 1 MK-RSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD-----YAYRLASDVCGNL 54 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 P +D + + R +LR+S+ +I ++D V A ++ AVE AK+ + Sbjct: 55 PWLDEAIASYSKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELAKKYGNDD 114 Query: 119 HFA 121 F+ Sbjct: 115 DFS 117 >gi|115397347|ref|XP_001214265.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114192456|gb|EAU34156.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 538 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 25/147 (17%) Query: 311 LVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 VD P + + D + + K + Q +++ + F V +S CS+ Sbjct: 379 TVDPPAVQDVSQAENELASSHLDPERLTKLSNLQTRIVEHALGFPAAT-RVTYSTCSIHL 437 Query: 371 QDSEEVVQKVLRSS--------PIPVELVPLNSAYWKSIDMA---------MALSPEGWI 413 ++E VV++VL S + E P WK + +G + Sbjct: 438 IENEAVVERVLASEVARRRGWRVMRREEQPEGLRKWKHRGVRSEGELTVDLSDEQLDGCL 497 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALRR 440 R P G GFF R Sbjct: 498 RCWPGD-------DEGTGGFFVAGFVR 517 >gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162] Length = 165 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 3/122 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + LL V + ++ + LL +A +V Sbjct: 15 ARHRARKRAVDLLFEVEARGVTDVDGLLAERRTLAADDASVPPVSEYTAQLVTGVDVDRE 74 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ++D+V+ L +L R + +LRV+V ++ DV VVD AVE AK + Sbjct: 75 QLDSVITSHLTGWTLARLPAVDRAILRVAVWELFNAPDVPPAVVVDEAVELAKELSTDES 134 Query: 120 FA 121 + Sbjct: 135 PS 136 >gi|225573684|ref|ZP_03782439.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM 10507] gi|225038977|gb|EEG49223.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 7/122 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYG--DSAFRLLSQRDQILVRAIVNVTLRFLP 61 R LL + + + + + L + D+ ++ + L Sbjct: 13 RSKIREHIFKLLF---MSQFNTEEEMPQQLTIYFNELEELDESDRAYMQEKYEQVISHLK 69 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID +L+ + R LR+SV ++ Y ++ ++ AVE AKR Sbjct: 70 EIDELLNQLSKGWKTSRMARVDLTALRLSVYELKYEEEIPTKVSINEAVELAKRFGGEDS 129 Query: 120 FA 121 FA Sbjct: 130 FA 131 >gi|149693676|ref|XP_001495117.1| PREDICTED: similar to Putative methyltransferase NSUN4 (NOL1/NOP2/Sun domain family member 4) [Equus caballus] Length = 384 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 107/310 (34%), Gaps = 29/310 (9%) Query: 155 RLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVS 214 ++ + L+ D + +T ++ + Sbjct: 82 AWDHVSAELEQLSARDFVNEAISHREREPESGQTAVPSPASLACSPNLRCFTFPRGDVSR 141 Query: 215 LPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VT 267 P G +++ DA++ +PV G +VLDLCAAPGGKT L+ +G + Sbjct: 142 FPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQTGCCRNLA 201 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST 319 A D+S R +L+ L + + D VLVD PC+ Sbjct: 202 ANDLSTSRTGRLQKVLHSYVPQDIRERNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTVD 261 Query: 320 --GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 ++ + Q +LL G+ KPGG VV+S CSL +E VV Sbjct: 262 RHSLHEEENNIFQRSRKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV 321 Query: 378 Q---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 Q + L I V++ L +D S + + P+++ Sbjct: 322 QGTVEFLANQYSIHVQVEDLTHFRKLFMDTFFFFPSCQVGELVIPNLMANFGP------- 374 Query: 433 FFAVALRRLI 442 + + RL Sbjct: 375 MYFCKMCRLT 384 >gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929] gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929] Length = 137 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 6/122 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R ++ L + + + + +++ L Sbjct: 4 TRHQIREIAFQTLFALNTNDQTDWKDFFQVLTSGKYGDDYPE---YLHQLISGVLEHKSE 60 Query: 63 IDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L SL R + +L +++ +++Y D+ ++ A+E AK+ ++R Sbjct: 61 IDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVSINEAIELAKKFSDDRS 120 Query: 120 FA 121 Sbjct: 121 RK 122 >gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473] gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473] Length = 138 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + + D+E + + + D R +++ + +DA + Sbjct: 11 ECAVQAIYSWQLSK---NDIADVELQFLSEQDVKDVDITYFRELLSGVAVNVTALDASMA 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAK-IFGAEDSHKFVNGV 126 Query: 128 LRR 130 L + Sbjct: 127 LDK 129 >gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas denitrificans DSM 1251] gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251] Length = 132 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR+ LL ++ D + R + + + + + Sbjct: 1 MATRHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRN---KQKDFALTLYEGVMANI 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D + L R + LR++ +IL+ ++ V++ AVE K Sbjct: 58 TPVDEAIVKHLKDWDFERLGAIERATLRLATYEILFGELDSAVVINEAVEITKAF-GTEQ 116 Query: 120 FAKLVNSILR 129 K +N +L Sbjct: 117 SPKFINGVLD 126 >gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes M1 GAS] gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS] Length = 150 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 14/139 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVNV 55 S + R + L + LL + ++ D + ++V Sbjct: 7 NSRRDLRERAFQALFNIEMGA----ELLAASQFAYGYDKVTGEDAQVLELPIFLLSLVTG 62 Query: 56 TLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAK 112 +D ++ L SL R + + LLR+ + +I Y D D ++ +E K Sbjct: 63 VNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEVVK 122 Query: 113 RDKENRHFAKLVNSILRRV 131 + + AK +N +L + Sbjct: 123 KY-SDETSAKFINGLLSQY 140 >gi|291525244|emb|CBK90831.1| transcription antitermination factor NusB [Eubacterium rectale DSM 17629] gi|291529297|emb|CBK94883.1| transcription antitermination factor NusB [Eubacterium rectale M104/1] Length = 131 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 3/121 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R +L V S +E + + ++ + + + + Sbjct: 2 TRSKIRENVFKMLFRVEFHDKS-ELAEQMELLNDELTNPTDEEKQYIDEKCSAIIEHMAE 60 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA++D R ++R++V +I + D+ ++ AVE AK+ + Sbjct: 61 LDALIDEKSTGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAKKYGADESG 120 Query: 121 A 121 A Sbjct: 121 A 121 >gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2143] gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma proteobacterium HTCC2143] Length = 158 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 5/147 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR L + ++ + D F + D IV+ L Sbjct: 14 AARRKARHYGMQALYQWQMTKYAVKDIELQFLADYDFSQV---DVEYFHDIVHHVPANLE 70 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ++A L ++ LLR+ +++ +D+ V++ AV AK+ Sbjct: 71 ELEAAFTPYLDRAMGDLDPIELSLLRLGSYELIKRIDIPYKVVINEAVSLAKKFGATDG- 129 Query: 121 AKLVNSILRRVSREKIELLQRIAGISI 147 K +N +L +++ + + + Sbjct: 130 HKYINGVLDKLAAQVRTIEIKAQQHYQ 156 >gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 107 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 10/111 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR + L + ++ + + ++V + Sbjct: 1 MKRRT-ARERAMQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVEN 53 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAV 108 ID + L L R + +LRV+V ++ Y+ ++ ++ Sbjct: 54 KEAIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINETN 104 >gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 2_1_46FAA] gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 2_1_46FAA] Length = 132 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 5/121 (4%) Query: 4 GMNARLVSSHLLSCVMRKRIS-LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 R +L + ++ ++L + LS++D+ + + + Sbjct: 3 RTELRQHIFKILFLIEFNGRDEMSEQIELYLDN--LEELSEKDRAYIENKYRSVVEKVEE 60 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID +L+ R +LR++ ++ + DV ++ AVE AK+ Sbjct: 61 IDELLNANATGWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAKKYSSEEGP 120 Query: 121 A 121 + Sbjct: 121 S 121 >gi|301768192|ref|XP_002919509.1| PREDICTED: putative methyltransferase NSUN4-like [Ailuropoda melanoleuca] Length = 384 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 98/261 (37%), Gaps = 29/261 (11%) Query: 204 RLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ 258 + P G +++ DA++ +PV G +VLDLCAAPGGKT Sbjct: 131 CFTFARGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLA 190 Query: 259 LIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------D 308 L+ +G + A D+S R +L+ L + + D Sbjct: 191 LLQTGCCRNLAANDLSTSRTGRLQRVLHSYVPQDIRDRNRVRVTSWDGRKWGELEGDTYD 250 Query: 309 AVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 VLVD PC++ +V + Q +LL G+ KPGG VV+S C Sbjct: 251 RVLVDVPCTTDRHSLHEEENNVFQRSRKKERQMLPMLQMQLLAAGLLATKPGGHVVYSTC 310 Query: 367 SLDKQDSEEVVQ---KVLR-SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLE 421 SL +E VVQ + L I V++ L+ +D + S + P++L Sbjct: 311 SLSHLQNEYVVQGTIEFLANQYSIKVQVEDLSHFRKLFMDTFSFFPSCLVGELVIPNLLA 370 Query: 422 KIDGVSSGMDGFFAVALRRLI 442 + + RL Sbjct: 371 NFGP-------MYFCKMCRLT 384 >gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum DSM 15272] gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum DSM 15272] Length = 136 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 7/123 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R + +L + + L + + +V Sbjct: 1 MGARTKYRKRALDVLFESELQGLEAGGSLTERLVTNEPPINP-----YTVTLVEGVAGTR 55 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RIDA++ +L R + LLR+ + +ILY DV D V AV A+ + Sbjct: 56 DRIDAIISEHAHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAVSLAQELSTDE 115 Query: 119 HFA 121 + Sbjct: 116 SAS 118 >gi|221053941|ref|XP_002261718.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193808178|emb|CAQ38881.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 507 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 10/107 (9%) Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPL 393 + + K + FQ+K+L + ++ V+S CS ++++E+VV+ VL+S+P Sbjct: 395 QEKVDKLSQFQKKILNHALDTLRIADTFVYSTCSFFEEENEQVVESVLKSNPGICLEKAG 454 Query: 394 NSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S ++ +R P++ G F RR Sbjct: 455 KEKFLFSR--GRSVVSSQCVRTFPELHACR--------GIFVSKFRR 491 >gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2] Length = 140 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + AR ++ + ++S + +E + + + D +A++ Sbjct: 1 MKVSARRKARELALQGIYSW---QMSHNDIQQIELALATSNDMKKVDMAYFQALLRGVAH 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +D + L + +LR++ ++ DV +++ A+E AK Sbjct: 58 SASHLDTTIKPYLGRLPEELDAIEKAILRIATLELTERKDVPYRVIINEAIELAKSF-GA 116 Query: 118 RHFAKLVNSILRR 130 K +N L + Sbjct: 117 EESHKFINGALDK 129 >gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48] gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48] Length = 177 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 13/127 (10%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDS----------AFRLLSQRDQILVRAIVNVT 56 ARLV L + + ++ + L D+ + Sbjct: 36 ARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRLGTADEAFFADGLRTI 95 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKR 113 ++ ID ++ L L R +L+ +LR ++ + DVA V++ VE AK Sbjct: 96 VKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDVAVEVVINEYVEIAKA 155 Query: 114 DKENRHF 120 N Sbjct: 156 FFGNEEA 162 >gi|109004030|ref|XP_001108301.1| PREDICTED: putative methyltransferase NSUN4-like isoform 4 [Macaca mulatta] Length = 384 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + P G +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFARGDVSRFPPARPGSLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + A D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLAANDLSTSRIARLQNILHSYVPQEIRDGNRVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQMQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S + Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRLFMDTFCFFSSCQVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P+++ + + RL Sbjct: 364 VIPNLMANFGP-------MYFCKMHRLT 384 >gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis 409-05] gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1] gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis 409-05] gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1] Length = 160 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + L K + LL+ + + IV RID Sbjct: 6 ARKRALNTLYEADEKNQHILSLLEERVKEPGAQTPLPE---YAVEIVRGVGERRNRIDKT 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 L+ + R + +LR++V ++L D + D +D A+ AK ++ A Sbjct: 63 LNRYSTGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAKMYSDDEAIA 119 >gi|302809573|ref|XP_002986479.1| hypothetical protein SELMODRAFT_425439 [Selaginella moellendorffii] gi|300145662|gb|EFJ12336.1| hypothetical protein SELMODRAFT_425439 [Selaginella moellendorffii] Length = 266 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 30/229 (13%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS----GAKVTALDVSKRRL 276 +++ DA++ + + VLDLCAAPGGKT ++ A + A + S R Sbjct: 52 FDYYLMDAASVLVTEALDLEMGDKVLDLCAAPGGKTLGILQQLDLLQASLVANEPSPTRS 111 Query: 277 EKLRCNLDRLHLYA----EDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 ++L + + + + L+D VLVD+PCSS + P L T Sbjct: 112 KRLSKVISEYVPENLRTSIRVTRRNGIKWTEYDLYDKVLVDSPCSSERHLLHDPKELGTW 171 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 A Q LL + K G +V+S CSL + +++ V+ Sbjct: 172 TPRRTENCAKRQLALLFAALRAAKLYGRIVYSTCSLSQLENDSVIS-------------- 217 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 N + + + E + PD+ + + + L++L Sbjct: 218 -NVGALRPLQWPVGEKTEHGRIVLPDVSQGWGPI-------YIAVLKKL 258 >gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG 18811] gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc gasicomitatum LMG 18811] Length = 138 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M + +R + +L + + S + L D+ + R +VN Sbjct: 1 MSNLTRHESRQAAFQVLFALEKDPKSNNIDKLYDIVLEGKDYDDYLPR-------LVNGV 53 Query: 57 LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 L +D + L + + R + +LR+++ ++L V +D A+ K Sbjct: 54 LGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLNNLVPYKVAIDEALILTKTF 113 Query: 115 KENRHFAKLVNSILRRVSR 133 + K VN +L+ + Sbjct: 114 -SDEESRKFVNGLLKNFTP 131 >gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1] gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1] Length = 178 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 5/115 (4%) Query: 17 CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLP 76 + + + D Y L D+ RA+++ L +D L+ +L L Sbjct: 47 EIDPEEPPVEAGDDEHYPRYPHDGL---DRPYFRALLHGVPARLNDLDQALEPLLDRPLR 103 Query: 77 RKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + LLR+ ++ +D +++ AV AKR + +N +L + Sbjct: 104 TLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRF-GAEQSHRYINGVLDK 157 >gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB] gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB] Length = 163 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 37/130 (28%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR L +E ++ D+ + + Sbjct: 20 SARRRAREFVLQGLYQWRVGG--ADEA-SIEAYAPEMEGFAKADREFFVGTLRGVISQQE 76 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHF 120 ++ + + +L + ++L + + +++ A+E K Sbjct: 77 KLIEQVSTHIDRPFNELSPVEACILMLGSFEMLNHAETPYRVIINEAIELTKAFGGTDG- 135 Query: 121 AKLVNSILRR 130 K VN +L + Sbjct: 136 HKYVNGVLDK 145 >gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens str. 13] gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens ATCC 13124] gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str. JGS1987] gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str. ATCC 3626] gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str. F4969] gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str. JGS1495] gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str. JGS1721] gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens str. 13] gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC 13124] gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str. JGS1495] gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str. JGS1987] gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str. ATCC 3626] gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str. F4969] gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str. JGS1721] Length = 135 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 54/136 (39%), Gaps = 4/136 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + + +R L + + + + D +++ + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISK-DDLDLAYIKSGLLGIEENKEK 60 Query: 63 IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D++++ ++ L R +LR+S +IL+ DV ++ A+E K+ +N+ Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 AKLVNSILRRVSREKI 136 + +N +L +V + Sbjct: 121 S-FINGVLDKVYKNMQ 135 >gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC 25996] gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC 25996] Length = 143 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 6/132 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ L + + F + D+ L + T Sbjct: 1 MKTPRRRARELAVQALYQAGINNTAAPEIAKNIQDQPDFA---KADEELFNKLFFGTHTH 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L ++ ++ + + +++ A+E K Sbjct: 58 AAEYIQQIRPLLDRDEKDLSPIERAVLLMACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 139 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 5/131 (3%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + L + + + + + D + R +++ +D ++ Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLAEQDVKYV---DVLYFRELLSGVATNSAYLDGLMK 67 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L + +LR+++ ++ DV ++ A+E AK K VN + Sbjct: 68 PYLSRQLEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGV 126 Query: 128 LRRVSREKIEL 138 L + + Sbjct: 127 LDKAAPVIRPH 137 >gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279] gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279] Length = 216 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 10/160 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + +L + S+ +L ++ S L I RI Sbjct: 10 RTLARSQALQILFQAEVRGESVGDVLAGDFTLSKGPLAD-----YAIQIARGVDANRERI 64 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DV-ADYAVVDLAVEQAKRDKENRH 119 D+ L V + SL R + + LLR +V ++ + D V++ AVE AK Sbjct: 65 DSALRAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAY-GTDD 123 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENF 159 A VN +L R+ RE+ + ++ + + Sbjct: 124 SAGFVNGVLGRIVRERHLPSLQHVACTVTADDCEAACVAA 163 >gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 164 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 15/143 (10%) Query: 1 MKSGMNA-----RLVSSHLLSCV-MRKRISLTCLLDLE------YGDSAFRLLSQRDQIL 48 M G NA R ++ +L + SL L S + Sbjct: 1 MAKGKNATRRGERELAFQVLYGLSFTPARSLEELRRSFRMSPDNLARSEESGVPVEACGF 60 Query: 49 VRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDL 106 +V +D + + + R LLR++ ++++ DV ++ Sbjct: 61 SWELVEGVWSNSSALDETISRFSHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAINE 120 Query: 107 AVEQAKRDKENRHFAKLVNSILR 129 A+E +++ + +N IL Sbjct: 121 ALELSRQF-GEGNAKNFINGILD 142 >gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp. 3_1_syn3] gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp. 3_1_syn3] Length = 163 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 20/145 (13%) Query: 1 MKSGMN-----ARLVSSHLLS---------CVMRKRISLTCLLDLEYGDSAFRLLSQRDQ 46 M N AR ++ +L +R +L + L Sbjct: 1 MSKAKNTTRRGARELAFQVLYGLSFTPAESRADLRRAF---VLSPHNTAMDEQDLGSEPT 57 Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVV 104 +V +D + + + R LLR++V ++LY DV + Sbjct: 58 GFAWELVEGVWGNSAALDTAISRFSHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPKVAI 117 Query: 105 DLAVEQAKRDKENRHFAKLVNSILR 129 + A+E + + + VN IL Sbjct: 118 NEALELSGQF-GEDNAKNFVNGILD 141 >gi|125539198|gb|EAY85593.1| hypothetical protein OsI_06967 [Oryza sativa Indica Group] Length = 394 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 21/164 (12%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIV------- 338 L D I A D +D VLVDA C+ G+I+ W T D Sbjct: 241 GLRKCDAIRPSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERT 300 Query: 339 -KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +LL G +K GG +V+S CSL +E VVQ+ L ++ Sbjct: 301 DDLLHLQLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCKHSSAELQKIDSADS 360 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 W ++ + +R P +S G F +L Sbjct: 361 WPCRGGSIFKT----LRFDP--------ATSQTSGLFVAKFTKL 392 >gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola ATCC 35405] gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405] Length = 136 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R+++ L L LL+ + + + + +V T+ + ID V+ Sbjct: 9 RILAFQALVAWDVGGAVLDDLLNFSWQNEDSIK-DPNGYLFPKMMVLGTIENITEIDKVI 67 Query: 68 DFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 L + + R + +LR+SV ++Y D V+D A+ AK + + Sbjct: 68 QENLDNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAINLAKDFGTDDSYK 123 >gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter sp. SXCC-1] gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter sp. SXCC-1] Length = 177 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 15/157 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----------SAFRLLSQRDQILVR 50 +S +R+ + L + + S +++ A + D L Sbjct: 13 RSRTASRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYAEGQVPDADARLFG 72 Query: 51 AIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLA 107 +V + RID +L +L L R L+ ++ + ++ D V +++ Sbjct: 73 IVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTGADPVPARVIINEY 132 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAG 144 ++ A +++N +L +SR E + A Sbjct: 133 MDIAHGFLAGDE-PRMLNGVLDALSRRLQEPAAQPAM 168 >gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus F0211] gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus F0211] Length = 141 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 4/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 + R + L + ++ + D S + + +V + Sbjct: 8 ARRELRERAFQALMSLEYEKDIVEACRFAYLYDKDMTNDSDVEIPAFLLNLVTGVEQSKN 67 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D L L +L R + +LR+ + ++ D ++ A+E +K+ + Sbjct: 68 ELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKF-SDEK 126 Query: 120 FAKLVNSILRRV 131 +K +N IL + Sbjct: 127 SSKFINGILSKF 138 >gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus 13826] gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus 13826] Length = 131 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 6/131 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL ++ D + R + + + L Sbjct: 1 MATRHQVRQAIVSLLYSNEINPVTA-EFEDEFLEEKKIRNERKNE---AQQTFKEVLANK 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ++D +L L + + +LR+ + ++ + +++ A+E AK + Sbjct: 57 EKLDEILKPHLKDGDFSKVGATELAILRLGLYEMKFSQTDKAVIINEAIELAKE-LGSDQ 115 Query: 120 FAKLVNSILRR 130 K +N +L + Sbjct: 116 APKFINGVLDK 126 >gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus subsp. fetus 82-40] gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus subsp. fetus 82-40] Length = 131 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 12/133 (9%) Query: 1 MKSGMNARLVSSHLLSCVMRK---RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + R LL L+ + + + + N L Sbjct: 1 MATRHQVRQSVVSLLYANEMGSEMEEFSNEFLEEKKIRNDQ-------KSFTLTLYNGVL 53 Query: 58 RFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 L ID LD L L + +LR+ +I + + V++ A+ A + Sbjct: 54 DNLNLIDEALDAHLGKWKLGEIGAVERAILRLGAYEIKFTNTQSAIVINEAILLA-NELG 112 Query: 117 NRHFAKLVNSILR 129 + + +N +L Sbjct: 113 SDSSTRFINGVLD 125 >gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 140 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRELRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLTGLVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK + ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-NFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC 8239] gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC 8239] Length = 135 Score = 74.5 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 54/135 (40%), Gaps = 4/135 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + + +R L + + + + D +++ + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISK-DDLDLAYIKSGLLGIEENKEK 60 Query: 63 IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D++++ ++ L R +LR+S +IL+ DV ++ A+E K+ +N+ Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 AKLVNSILRRVSREK 135 + +N +L +V + Sbjct: 121 S-FINGVLDKVYKNM 134 >gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62] gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62] Length = 157 Score = 74.5 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAF------RLLSQRDQILVRAIVNV 55 K ARL ++ L + ++ + E+ F L++ D R ++ Sbjct: 12 KMRSAARLFATQALYQMELSGQTVDAV-RQEFETYRFGEVIDGDELAEGDVETFRDLLEN 70 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L ++ R +L+ L R + A++ V+ V+ A Sbjct: 71 AVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQSSTPPKVVIVEFVDVAVA 130 Query: 114 DKENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 131 FFPEGKEPKFVNAVLDHM 148 >gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591] gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis SC84] gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis P1/7] gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis BM407] gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis 05HAS68] gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3] gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591] gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis SC84] gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis BM407] gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein) [Streptococcus suis P1/7] gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis JS14] gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3] Length = 139 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 1 MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +A R + + + + + D + + +VN + Sbjct: 1 MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVADY 60 Query: 60 LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116 +D L L +L R + ++R+ + +IL + + D V+ A+E AK Sbjct: 61 RDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEF-S 119 Query: 117 NRHFAKLVNSILRRV 131 + AK VN +L + Sbjct: 120 DESSAKFVNGVLSQF 134 >gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402] Length = 136 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R+++ L L LL+ + + + + +V T+ + ID V+ Sbjct: 9 RILAFQALVAWDVGGAVLDDLLNFSWQNENSIK-DPNSYLFPKMMVLGTIENITEIDKVI 67 Query: 68 DFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 L + + R + +LR+SV ++Y D V+D A+ AK + + Sbjct: 68 QENLDNWVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAINLAKDFGTDDSYK 123 >gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris PB013-T2-3] gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris PB013-T2-3] Length = 136 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 50/141 (35%), Gaps = 11/141 (7%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCL-LDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + +L ++ + R + + V+ + Sbjct: 1 MSLTRHALREEAFQVLFA-LQTNPDADLATIYQSIPHHDERAIPE----YVQRLATGVSD 55 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 +D + +L ++ R + +LR+++ ++ Y +V ++ A+E AK Sbjct: 56 RQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVAINEALELAKEFS 115 Query: 116 ENRHFAKLVNSILRRVSREKI 136 ++ +N L R +E Sbjct: 116 NDQSRK-FINGALGRFEKENN 135 >gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus coleohominis 101-4-CHN] gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus coleohominis 101-4-CHN] Length = 137 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 18/144 (12%) Query: 1 MK-SGMNARLVSSHLLSCVM-----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVN 54 M S R+ + L ++ K +L L ++A + L +V+ Sbjct: 1 MSFSRHTIRIAAFQTLFALINNPSADKGALYAEVLKLGSKETAPQYLD--------ELVS 52 Query: 55 VTLRFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQA 111 +DA++ L + ++ R +LR+++ ++ Y ++ V++ A+E A Sbjct: 53 GVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIVINEALELA 112 Query: 112 KRDKENRHFAKLVNSILRRVSREK 135 K +++ + +N +L +E Sbjct: 113 KSFSDDKSR-RFINGVLGHYEKEH 135 >gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP9-BS68] gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP195] gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus pneumoniae 70585] gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP9-BS68] gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP195] gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae 70585] gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae INV104] gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA17570] Length = 140 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + ++ Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTNVETACRFAYTHDREDT-DVQLPAFLIDLVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20] gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20] Length = 140 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 12/135 (8%) Query: 3 SGMNARLVSSHLLSCVMR--KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 + +R + +L + + + ++ L D+ F R +VN L Sbjct: 5 TRHESRQAAFQILFALEKDPQNNNIDRLYDIVLEGKDFDDYLPR-------LVNGILGNK 57 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +DA + L ++ R + +LR+++ ++ V +D A+ AK + Sbjct: 58 IDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQLVPYKVAIDEALILAKTF-ADE 116 Query: 119 HFAKLVNSILRRVSR 133 K VN +L+ + Sbjct: 117 DDRKFVNGVLKNFAP 131 >gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae R3021] Length = 121 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 5/116 (4%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSL 75 + + E + + D+ R + T+ + +D + + + Sbjct: 2 YSWAVSGNTAEQV---ELAFVLDQDMDGVDKPYFRKLFRQTIENIETVDFSISPYIDRAF 58 Query: 76 PRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 +LR++V ++ + LDV V++ A+E AK + K +N +L + Sbjct: 59 DELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADES-HKYINGVLDK 113 >gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl 5] gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter diazotrophicus PAl 5] gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl 5] Length = 183 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 17/164 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-------------SAFRLLSQRDQIL 48 +S +R+ L + + + ++ + + D L Sbjct: 15 RSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGEEYEDGRVPEADIRL 74 Query: 49 VRAIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105 + + +IDA++ VL + R L+ LLR + A++ V +++ Sbjct: 75 FEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAELAATGGVPTRVIIN 134 Query: 106 LAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIP 149 ++ A K+VN +L ++R + P Sbjct: 135 EYLDIAHGFFSGDE-PKMVNGVLDTLARRLRAADTPADVLPEDP 177 >gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC 29256] gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC 29256] Length = 143 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 6/132 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ L + + F + D+ L + T Sbjct: 1 MKTPRRRARELAVQALYQAGINNTAAPEIAKNIQDQPDFA---KADEELFNKLFFGTHTH 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L ++ ++ + + +++ A+E K Sbjct: 58 AAEYIQQIRPLLDRDEKDLSPIERAVLLMACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum ATCC 49989] gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum ATCC 49989] Length = 135 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 6/135 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR ++ ++ + + + L+D D +++ +R + ++ + Sbjct: 4 NRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIG---KEEAYIREVFSLVTDNIDA 60 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 IDA L+ + ++ +LR++VA+I Y D+ V+ AV AK+ +++ Sbjct: 61 IDAELNAKMKGWTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAVRIAKKFSDDKS- 119 Query: 121 AKLVNSILRRVSREK 135 AK +N IL + ++ Sbjct: 120 AKFINGILANIGKDY 134 >gi|71664085|ref|XP_819027.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70884310|gb|EAN97176.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 529 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 103/294 (35%), Gaps = 58/294 (19%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-------------LSVLDLCAA 251 + + + P G +QD ++ +P + ++D CAA Sbjct: 238 VFPAGTDLHAHPAVRSGQLILQDRASCLPACILLDAVEVVRPSSAGAGAPLEYIVDACAA 297 Query: 252 PGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKK 305 PG KT L GA A++ ++R + L + L +++ +D F ++ Sbjct: 298 PGNKTTHLAALGAPHVKIMAVERDEKRADLLFRRVQSLGASDYVNVVNLDFFQMSSADRE 357 Query: 306 LFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS------------------------- 340 + +L+D CS++G + R L + + + Sbjct: 358 ATEGILLDPSCSASGVLTRVDVSLMRQRQARVAEVGENNRGEDGAGNNETWAISPEEHGT 417 Query: 341 ------------ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 A QRKLL + VV+S CS+ +++E VV++VL + + Sbjct: 418 EFASNADRVMGLARLQRKLLAHALLSFDNCRTVVYSTCSVHVEENELVVRQVLEDTRVQA 477 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L++ + + + D + D V+ +GF+ R + Sbjct: 478 RGWALSNIMPTTWKTRGQKTEGDTFPL--DHTIRCDPVADATNGFYVARFDRAV 529 >gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD] gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD] Length = 160 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 5/117 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + L K + LL+ + + IV RID Sbjct: 6 ARKRALNTLYEADEKNQHILSLLEERVKEPGAQTPLPE---YAIEIVRGVGERRNRIDKT 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 L+ + R + +LR++V ++L D + D +D A+ AK ++ A Sbjct: 63 LNRYSTGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAKMYSDDEAIA 119 >gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1] gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1] Length = 148 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R + + + ++ ++AF L + + + + + L I Sbjct: 9 RRKIREIVFRSIFQYDFHKDF-PAAMEYLERETAFYSLDKESKNRAKGYLMGIIEHLDEI 67 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 D+++ L + + R + +LR++ ++LY DV ++ A+E K+ ++ Sbjct: 68 DSIITAYLKNWTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEITKKY-GSQEEG 126 Query: 122 KLVNSILRR 130 K VN +L + Sbjct: 127 KFVNGVLDK 135 >gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 128 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + L + K LT + + L + +V Sbjct: 2 SRKESRTQAFQTLFQLEMKNSDLTIEEAISFIKDDNPDLEFE---FISWLVTGVKDHEVV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L +L R S + +LR+S ++L+ +++ AVE AK+ ++ H+ Sbjct: 59 LDEKIQPHLKDWTLARLLKSDRIILRMSTFEMLHSSTPQKVIINEAVELAKQFSDDDHYK 118 Query: 122 KLVNSILRR 130 +N +L Sbjct: 119 -FINGVLSN 126 >gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus subsp. carnosus TM300] gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus carnosus subsp. carnosus TM300] Length = 128 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + L + + L+ + + + L + + +V+ P Sbjct: 2 SRKESRSQAFQALFQLEMENTDLSIDEAINFIKDDYPDL---EFDFIYWLVSGVKDHEPV 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 +D + L + R + + +LR++ ++ D +++ AVE AK+ ++ H+ Sbjct: 59 LDEKIQNNLKDWKISRLLKTDRIILRMAAFELANSDTPPKVIINEAVELAKQYSDDDHY- 117 Query: 122 KLVNSILRR 130 + +N +L Sbjct: 118 RFINGVLSN 126 >gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216] gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216] Length = 136 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 10/122 (8%) Query: 12 SHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 +L ++ L L D +V + RID VL Sbjct: 12 LEVLFEADQRGLAPLDVLKDKILRADPPVG------EYAVTVVEGVVEHQARIDEVLSTY 65 Query: 71 -LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 + L R + LLR+ ++LY DV D+ V AVE A ++ K VN +L Sbjct: 66 SMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVAVSEAVEIA-QELSTDESPKFVNGLL 124 Query: 129 RR 130 R Sbjct: 125 AR 126 >gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1] Length = 156 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLP 61 ARL + L + I + + + + D RA++ ++ Sbjct: 19 ARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDGDQYLDADFQWFRAVIAGVVQNQK 78 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 ++D +L L SL R L+ +LR + +++ + ++ +V V+ AK E Sbjct: 79 QLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKNIPTAVIVSEYVDVAKAFFEGD 138 Query: 119 HFAKLVNSILRR 130 +LVN+IL R Sbjct: 139 E-PRLVNAILDR 149 >gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus ferrooxydans PV-1] gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus ferrooxydans PV-1] Length = 145 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 3/132 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR L + + +L + +D+ +R V Sbjct: 1 MANRHQARESVLETLYAWSSAQQDSGMIPELLASRLQHEERADQDESYLREAVYGITDHT 60 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +D ++ + SL ++R++V ++ L++ +++ A+E + Sbjct: 61 DALDELIKTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALELTRDYAGEP 120 Query: 119 HFAKLVNSILRR 130 +N +L Sbjct: 121 PR-GFINGVLDN 131 >gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii L2-63] Length = 164 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 8/120 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + +R + LL + L+ D++ + +A+V+ Sbjct: 30 TRSESREQAFMLLF----SKSFDDEPLEETIDDNSEMFVGGV-CAYAQAVVSGIEDKHEE 84 Query: 63 IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH 119 ID ++ L L R +LR+++ ++ YLD V ++ AVE AK+ + Sbjct: 85 IDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSINEAVELAKKYTIDES 144 >gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3] gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3] Length = 136 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR + L+ + K +++ +LDL L+ + Sbjct: 2 TRREAREQALCLVFEGLFKEENVSEILDLAVQAREEFLVDT----FAEMLATGVYDHRDD 57 Query: 63 IDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID ++ + + R + +LR++ ++LY D D ++ AVE AK+ + Sbjct: 58 IDRKIEQYAIGWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEAVELAKKYGGDGDS 117 Query: 121 A 121 A Sbjct: 118 A 118 >gi|46200514|gb|AAL73534.2|AF466200_13 putative protein [Sorghum bicolor] Length = 297 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 21/166 (12%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDI-------- 337 L D+ + +D VLVDA C+ G+I+ W T D Sbjct: 144 GLCKSDVFCPSVDNEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRILDAGRT 203 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q LL G +K GG +V+S CSL +E VVQ+ L + P + Sbjct: 204 ENLLQLQLHLLTNGFKLLKTGGSLVYSTCSLTVSQNESVVQQFLSTHPSADLQKIDLADN 263 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 W + + +R P + + G F +L Sbjct: 264 WPCRSGGIPKT----LRFDPAVSQTS--------GLFVAKFSKLPT 297 >gi|125581864|gb|EAZ22795.1| hypothetical protein OsJ_06471 [Oryza sativa Japonica Group] Length = 394 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 59/164 (35%), Gaps = 21/164 (12%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDIV------- 338 L D I A D +D VLVDA C+ G+I+ W T D Sbjct: 241 GLRKCDAIRPSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERT 300 Query: 339 -KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q +LL G +K GG +V+S CSL +E VVQ+ L EL ++SA Sbjct: 301 DDLLHLQLRLLTNGFKLLKTGGSLVYSTCSLTVAQNENVVQQFLCKH-SSAELQKIDSAD 359 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +R P +S G F +L Sbjct: 360 SWPCRSGSIF---KTLRFDP--------ATSQTSGLFVAKFTKL 392 >gi|308801203|ref|XP_003077915.1| ABC transporter C family protein (ISS) [Ostreococcus tauri] gi|116056366|emb|CAL52655.1| ABC transporter C family protein (ISS) [Ostreococcus tauri] Length = 1665 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 11/81 (13%) Query: 364 SNCSLDKQDSEEVVQKVLRSSPIPVE---LVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 S CS+ +++E VV +LR + + L + S E R P + Sbjct: 1491 STCSIAVEENEAVVDYILRKRDVKIVSSGLEFGRKGFTSYRGKNFHPSVEHARRFYPHV- 1549 Query: 421 EKIDGVSSGMDGFFAVALRRL 441 MDGFF L++L Sbjct: 1550 -------HNMDGFFVCKLKKL 1563 >gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii AYE] gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii ACICU] gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii AB0057] gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii AB307-0294] gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii AB900] gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii ATCC 19606] gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013150] gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013113] gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii 6014059] gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter baumannii AYE] gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU] gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC 17978] gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii AB0057] gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii AB307-0294] gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii ATCC 19606] gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2] gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii TCDC-AB0715] gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013150] gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii 6013113] gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii 6014059] Length = 149 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + ++A + D ++ + +DA+L V Sbjct: 19 AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L + LR+ ++ +L++ V+D A+E AK K +N +L Sbjct: 76 LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis 98HAH33] gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33] gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1] Length = 140 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 5/135 (3%) Query: 1 MKSGMNA-RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +A R + + + + + D + + +VN + Sbjct: 2 MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDREEEQEGVEIPLFLLNLVNGVADY 61 Query: 60 LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKE 116 +D L L +L R + ++R+ + +IL + + D V+ A+E AK Sbjct: 62 RDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEF-S 120 Query: 117 NRHFAKLVNSILRRV 131 + AK VN +L + Sbjct: 121 DESSAKFVNGVLSQF 135 >gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5] gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum AIU301] gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5] gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum AIU301] Length = 165 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 13/123 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS----------AFRLLSQRDQILVRA 51 + AR + L + ++D + D L Sbjct: 9 RPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPPDVPLFSR 68 Query: 52 IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV-DLAV 108 IV +D ++ VL +PR L+ LLR + A++ D VV + + Sbjct: 69 IVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPARVVINEYL 128 Query: 109 EQA 111 + A Sbjct: 129 DVA 131 >gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia odorifera DSM 4582] gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia odorifera DSM 4582] Length = 117 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 26 TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQL 85 + D+E + + D R +++ +DA++ L L + + Sbjct: 4 NDIADVELQFLTEQDVKDVDIAYFRELLSGVAVNAGTLDALMAPYLSRQLEELGQVEKAV 63 Query: 86 LRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 LR+++ ++ + DV ++ A+E AK K VN +L + Sbjct: 64 LRIALFELKMREDVPYKVAINEAIELAKTF-GAEDSHKFVNGVLDK 108 >gi|242080479|ref|XP_002445008.1| hypothetical protein SORBIDRAFT_07g002670 [Sorghum bicolor] gi|241941358|gb|EES14503.1| hypothetical protein SORBIDRAFT_07g002670 [Sorghum bicolor] Length = 408 Score = 74.2 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 21/166 (12%) Query: 287 HLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDI-------- 337 L D+ + +D VLVDA C+ G+I+ W T D Sbjct: 255 GLCKSDVFCPSVDNEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRILDAGRT 314 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q LL G +K GG +V+S CSL +E VVQ+ L + P + Sbjct: 315 ENLLQLQLHLLTNGFKLLKTGGSLVYSTCSLTVSQNESVVQQFLSTHPSADLQKIDLADN 374 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 W + + +R P + + G F +L Sbjct: 375 WPCRSGGIPKT----LRFDPAVSQTS--------GLFVAKFSKLPT 408 >gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261] gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261] Length = 158 Score = 74.2 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 6/131 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + +R ++ +L + + + ++ + F +V Sbjct: 8 QKRRRSREIAIQILYALDIRN---SEKVNEMFSLYPFGDEEPDVVSYASLLVKGVWEARF 64 Query: 62 RIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQ-ILYLDVADYAVVDLAVEQAKRDKENRH 119 ID ++ + R + LR+++ + I+ + + AVE AK Sbjct: 65 EIDTLIRKHVVGWRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEAVELAKTF-GTDE 123 Query: 120 FAKLVNSILRR 130 + VN +L + Sbjct: 124 SGRFVNGVLGK 134 >gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter calcoaceticus PHEA-2] Length = 149 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + ++A + D ++ + +DA+L V Sbjct: 19 AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L LR+ ++ +L+V V+D A+E AK K +N +L Sbjct: 76 LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|124803684|ref|XP_001347789.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] gi|23496040|gb|AAN35702.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] Length = 579 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 65/174 (37%), Gaps = 14/174 (8%) Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK---KLFDAVLVDAPCSS 318 + + K+ L+K + + + + F +L+D PCS+ Sbjct: 365 NEYNKVRYERLKKVLDKYIPSDLINRSSNIHVTNYNGLNINSFLRFPKFHKILLDVPCST 424 Query: 319 TGTIRRH-PDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 + + L I ++ Q +LL+ + + GG++++S C+L +++ V+ Sbjct: 425 DEHLIKQGTKELNKWSIHVIKNNSDIQLQLLINAFTLLHTGGVIIYSTCALSYLENDYVI 484 Query: 378 QKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 +K L+ ++++ +++ + + + + +D Sbjct: 485 EKFLKKYKNNIQIIDFIHEEYQTKIS----------QYLSNYVNNKRNHNHNID 528 >gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571] gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571] Length = 137 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 9/127 (7%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVTLRFLPRIDAV 66 L + + +L R + + D+ L R +V L ID + Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDVYPEADRALFRTVVEGVLAQQRTIDPM 60 Query: 67 LDFVLI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 +D L L R + ++ LR +++ + V+ V A R + Sbjct: 61 VDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFF-EREETGM 119 Query: 124 VNSILRR 130 VN++L Sbjct: 120 VNAVLDS 126 >gi|322824313|gb|EFZ29755.1| hypothetical protein TCSYLVIO_3957 [Trypanosoma cruzi] Length = 529 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 105/294 (35%), Gaps = 58/294 (19%) Query: 205 LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN-------------LSVLDLCAA 251 + + + P G +QD ++ +P + ++D CAA Sbjct: 238 VFPAGTDLHAHPAVRSGQLILQDRASCLPACILLDAVEVVRPSSVGAGAPLEYIVDACAA 297 Query: 252 PGGKTAQLIVSGAKV---TALDVSKRRLEKLRCNLDRLHLYA-EDIIEMDAFDYC--PKK 305 PG KT L GA A++ ++R + L + L +++ +D F ++ Sbjct: 298 PGNKTTHLAALGAPHVKIMAVERDEKRADLLFRRVQSLGASDYVNVVNLDFFQMSSADRE 357 Query: 306 LFDAVLVDAPCSSTGTIRR-------------------------------------HPDV 328 + +L+D CS++G + R Sbjct: 358 ATEGILLDPSCSASGVLTRVDVSLMRQRQARVAEDGEKNRGEDGAGNNETWAISPEEHGT 417 Query: 329 LWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 + R+ D ++ A QRKLL + VV+S CS+ +++E VV++VL + + Sbjct: 418 EFARNADRVMGLARLQRKLLAHALLSFDNCRTVVYSTCSVHVEENELVVRQVLEDTRVQA 477 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 L++ + + + D + D V+ +GF+ R + Sbjct: 478 RGWALSNIMPTTWKTRGHKTEGDTFPL--DHTIRCDPVADATNGFYVARFDRAV 529 >gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5] gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5] Length = 148 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 3/136 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ AR + +L + + L + + + + +V+ +R + Sbjct: 1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYE--YAKKLVDTAVRHI 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID++++ L S+ R Y + LR+ VA++++L + V + + + + Sbjct: 59 EEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEK 118 Query: 120 FAKLVNSILRRVSREK 135 K VN +L + + Sbjct: 119 AGKFVNGVLSAIYKAY 134 >gi|326475897|gb|EGD99906.1| hypothetical protein TESG_07236 [Trichophyton tonsurans CBS 112818] Length = 528 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 142/471 (30%), Gaps = 80/471 (16%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106 + A++ ++ I V+D I + K + LL V + +A + + Sbjct: 34 AQIYALIVEVAKYNECIKEVIDNAGILAHESKLTPILSLLLVHDFLLSKRGIAAPS--NH 91 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + A ++R A+L +RR K EL ++ + + F R L Sbjct: 92 PLRLAVERHKSRLNAELTKLRVRRGCASKEELKHKLVQDQQVMQTFSPRWIRINNALTTL 151 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWW 224 Y ++ ++ L L + I S + EG Sbjct: 152 DHEIKSTFAGYESVSSLSELAEATANERKYFLDEHIPDLMAISRDIDITSSSAYKEGRII 211 Query: 225 VQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDVS 272 +QD ++ P L ++D CAAPG KT L ++V +LD S Sbjct: 212 LQDKASCFPAYLLLGDHPGQWKGDLIDGCAAPGNKTTHLASLLSSAPEKQKSRVFSLDAS 271 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHP 326 R + L+ + + + +D CS +G +R Sbjct: 272 HSRSKILQTMVKKAGASNIVTVLPGQDFLALDPADTRFQHVTALLLDPSCSGSGITKRED 331 Query: 327 D----------------------VLWTRDTDDI-----------------------VKSA 341 + + K A Sbjct: 332 VPLLDLPKSKAELMLSTTAGSKGSKNRKRKRENPVHSSSPGTFPTTEAKEDASERLAKLA 391 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNS- 395 Q +++ F V +S CS+ +++E+VV +VL ++ +EL + Sbjct: 392 NLQSQIVEHAFGFPAAT-RVTYSTCSIHHEENEDVVARVLASSIAKNRGWRLELRSEQAR 450 Query: 396 --AYWKSIDMAMALSPEGWIRITPD----MLEKIDGVSSGMDGFFAVALRR 440 W M + E +++P+ + G GFF R Sbjct: 451 GLRNWHHRGMLSGGTSECPPQLSPEQVEACIRCWPAGDEGTGGFFVAIFVR 501 >gi|326483000|gb|EGE07010.1| NOL1/NOP2/sun domain-containing protein [Trichophyton equinum CBS 127.97] Length = 528 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 77/471 (16%), Positives = 142/471 (30%), Gaps = 80/471 (16%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106 + A++ ++ I V+D I + K + LL V + +A + + Sbjct: 34 AQIYALIVEVAKYNECIKEVIDNAGILAHESKLTPILSLLLVHDFLLSKRGIAAPS--NH 91 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + A ++R A+L +RR K EL ++ + + F R L Sbjct: 92 PLRLAVERHKSRLNAELTKLRVRRGCASKEELKHKLVQDQQVMQTFSPRWIRINNALTTL 151 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWW 224 Y ++ ++ L L + I S + EG Sbjct: 152 DHEIKSTFAGYESVSSLSELAEATANERKYFLDEHIPDLMAISRDIDITSSSAYKEGRII 211 Query: 225 VQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQL--------IVSGAKVTALDVS 272 +QD ++ P L ++D CAAPG KT L ++V +LD S Sbjct: 212 LQDKASCFPAYLLLGDHPGQWKGDLIDGCAAPGNKTTHLASLLSSAPEKQKSRVFSLDAS 271 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHP 326 R + L+ + + + +D CS +G +R Sbjct: 272 HTRSKILQTMVKKAGASNIVTVLPGQDFLALDPADTRFQHVTALLLDPSCSGSGITKRED 331 Query: 327 D----------------------VLWTRDTDDI-----------------------VKSA 341 + + K A Sbjct: 332 VPLLDLPKSKAELMLSTTAGSKGSKNRKRKRENPVHSSSPGTFPTTEAKEDASERLAKLA 391 Query: 342 CFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL-----RSSPIPVELVPLNS- 395 Q +++ F V +S CS+ +++E+VV +VL ++ +EL + Sbjct: 392 NLQSQIVEHAFGFPAAT-RVTYSTCSIHHEENEDVVARVLASSIAKNRGWRLELRSEQAR 450 Query: 396 --AYWKSIDMAMALSPEGWIRITPD----MLEKIDGVSSGMDGFFAVALRR 440 W M + E +++P+ + G GFF R Sbjct: 451 GLRNWHHRGMLSGGTSECPPQLSPEQVEACIRCWPAGDEGTGGFFVAIFVR 501 >gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228] Length = 133 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS----AFRLLSQRDQILVRAIVNVTLR 58 S R+ + +L + ++ L+ A + + D V I+ + Sbjct: 5 SRHKQRIWALQILYGLDIRKK---LALEHSKKSYENFMAEKGVLSEDL-YVAEILEGIIL 60 Query: 59 FLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 L +DA +D + + R + +LR++ +I + D+ ++ AV+ AK+ + Sbjct: 61 ELELLDAQIDQYAINWDIERMPAIDRNILRIAAYEIQH-DIPAKVAINEAVKIAKKY-AD 118 Query: 118 RHFAKLVNSILRRV 131 +N IL + Sbjct: 119 DSSPSFINGILSKF 132 >gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB antitermination factor) [Deinococcus deserti VCD115] gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB antitermination factor) [Deinococcus deserti VCD115] Length = 168 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTL 57 + AR +L R + L + G D F LS +V Sbjct: 14 TRRAAREFVFRVLFEADRGDLPLDTVFTRAEGAMREGDDTFPQLSADALTFANELVRGLE 73 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + ID L + S + + +LR++ +++Y V++ AV A++ Sbjct: 74 KHRADIDTTLRRTIRGWSFDQMAQTDLNVLRLATFELIYTAEPHPPVIESAVRIARKFGG 133 Query: 117 NRH 119 + Sbjct: 134 DDS 136 >gi|332022336|gb|EGI62648.1| Putative methyltransferase NSUN5 [Acromyrmex echinatior] Length = 631 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 79/452 (17%), Positives = 156/452 (34%), Gaps = 55/452 (12%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 +++ ++ V SL L+ + + + + TL+ LP++D + D Sbjct: 16 KITADIVRRVREDGASLKTLIYEKKHPNV---------AGIYGLAVNTLQALPQLDQLFD 66 Query: 69 F---VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + R L RV + ++L+ KR +NR L Sbjct: 67 KTQILTEQP--RLNPW---LARVLITELLWR---------------KRCLKNRSKPVLTV 106 Query: 126 SILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 RE+ L I + +R +L++ A + Sbjct: 107 LAYENKLREESINLGYIETFVDHKD-KVKRPRYVRVNTLLLSVEKAISLFQEDGWQLLPK 165 Query: 186 IETWAHKLNAVMLPTGGIRLKELPES----------IVSLPGFAEGVWWVQDASASIPVQ 235 T++ L ++ + +++L + G+ G +QD ++S+PV Sbjct: 166 STTYSSYLQSLSQLSEPYFIQDLHIPEMLAFPPSTIFHNHEGYRGGKLILQDKASSLPVH 225 Query: 236 LFGTLNNLSVLDLCAAPGGKTAQ---LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAED 292 L ++ +VLD+CAAPG K + + + A+++ +R + L L++ H + Sbjct: 226 LLNPISGSTVLDMCAAPGMKATHVAAKLQNNGTIYAVEIDAKRFKTLLTQLEKTHALCVE 285 Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS----ACFQRKLL 348 + D K + + +G+ D +K FQ LL Sbjct: 286 PLNQDVLTLNSKLYSHVEYILVDPTCSGSGIVDRPKQSEMDGMPELKRLKNLQSFQVYLL 345 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALS 408 + +++S CSL +++EEVV +VL + L+P+ K+ + Sbjct: 346 RYALFNFPNAKRIIYSTCSLHPEENEEVVDEVLANVGNAYRLLPVRQ-LLKNNWTNFSSK 404 Query: 409 PEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 D+ +GFF R Sbjct: 405 KYNC----GDLCLYSKPNDDFCNGFFVAVFER 432 >gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 143 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 7/147 (4%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK AR + L S + + F+ D L A+ Sbjct: 1 MKTSPRRRAREFTVQALYQAALNHASAPEIAKNIREAADFKR---ADADLFTALFFGAHG 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ++ +L + +L ++ ++ + + +++ A+E K Sbjct: 58 NSAEYMQIIRPLLDRDEKDINPIERGILLMACHELSAMPETPYPVIINEAIEVTKTFGGT 117 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAG 144 K +N IL ++S + + A Sbjct: 118 DS-HKFINGILDKLSVQLRPNDPKRAP 143 >gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis ATCC 25644] gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis ATCC 25644] Length = 128 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 49/131 (37%), Gaps = 9/131 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S + R ++ L + + Y + + + + +V+ L Sbjct: 2 SRHDIRRLAFQTLFAMSSN---PDAVATDVYQTVLGKDIEAPE--YLTQLVDGVNEHLAE 56 Query: 63 IDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID + L + R + L+R++V +I + +V + ++ A+E +K + Sbjct: 57 IDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVSLNEALELSKEF-SDET 115 Query: 120 FAKLVNSILRR 130 + +N +L Sbjct: 116 SRRFINGVLSN 126 >gi|167533590|ref|XP_001748474.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772993|gb|EDQ86638.1| predicted protein [Monosiga brevicollis MX1] Length = 297 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 20/178 (11%) Query: 276 LEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRD- 333 L R R ++ + +L+D VLVDA C+ G+I+ W Sbjct: 119 LRAAREAYLREQDAQDEAQTANPPVQATDQLYDKVLVDAECTHDGSIKHLTKFDRWGWST 178 Query: 334 -------TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI 386 I + QR LL G ++ GG +V+S CS + +E++VQ +L P Sbjct: 179 FEQRFFDPTRISQLETLQRGLLQNGFRRLREGGTLVYSTCSFSHRQNEDIVQWLLDHEPG 238 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 L A + + + + + K V++ G F + QP Sbjct: 239 AQLLSCKGMAAFPAAAFHPLATAD---------VLKFSPVATATSGLFVARFTK--QP 285 >gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis I19] Length = 210 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 5/140 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLP 61 S AR ++ +L + + +++ S + L + IV T + L Sbjct: 30 SRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVAAYTKEIVAGTAQELD 89 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID ++ L L R + +LRV+V ++++ DV V VE Sbjct: 90 RIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELV-SQYSTD 148 Query: 119 HFAKLVNSILRRVSREKIEL 138 VN++L +++ Sbjct: 149 VAPAYVNALLDSIAQNIESH 168 >gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium pseudotuberculosis FRC41] gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium pseudotuberculosis FRC41] gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis C231] gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 73.8 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 5/140 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLP 61 S AR ++ +L + + +++ S + L + IV T + L Sbjct: 28 SRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVAPVAAYTKEIVAGTAQELD 87 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 RID ++ L L R + +LRV+V ++++ DV V VE Sbjct: 88 RIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNEDVPVATAVVDGVELV-SQYSTD 146 Query: 119 HFAKLVNSILRRVSREKIEL 138 VN++L +++ Sbjct: 147 VAPAYVNALLDSIAQNIESH 166 >gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes J139] gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes J139] gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes HL001PA1] gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes HL082PA2] gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA3] gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA4] gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes HL060PA1] gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA2] gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium acnes HL103PA1] Length = 261 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 8/144 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L +L + + + + +V Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVTATQV 91 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D+VL L +L R + L R+ +IL+ D + AV+ A+E ++ Sbjct: 92 GLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEF-STDD 150 Query: 120 FAKLVNSILRRVSREKIELLQRIA 143 A +N +L V ++ + Sbjct: 151 SAPFLNGLLGAVITHGPACIEDQS 174 >gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C] Length = 156 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + I ++ + + D +I+ Sbjct: 14 NKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDGSQYLDADFQWFCSIIVGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 +R ++D +L L +L R +L+ +LR + +++ DV +++ ++ AK Sbjct: 74 VRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKDVPIAVILNEYIDIAKA 133 Query: 114 DKENRHFAKLVNSILRRVSREKIE 137 +N +LVN++L +++E + Sbjct: 134 FFDNDE-PRLVNAVLDSIAKEMCQ 156 >gi|292670715|ref|ZP_06604141.1| transcription antitermination factor NusB [Selenomonas noxia ATCC 43541] gi|292647661|gb|EFF65633.1| transcription antitermination factor NusB [Selenomonas noxia ATCC 43541] Length = 138 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 4/134 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +AR + L + + +++ D +V+ T FL Sbjct: 2 SRRSAREAALLTLFQLEFDADKACEERVSDLAIDEVDGITEEDLPYAHNLVHGTRSFLSE 61 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRH 119 IDA ++ + L R + L+R++ ++ Y + ++ AVE AK+ + Sbjct: 62 IDAEIERMAKEWKLRRMAAVDRNLIRMAYYEMRYQEERIDPPVAINEAVELAKKY-GSDD 120 Query: 120 FAKLVNSILRRVSR 133 + VN IL + + Sbjct: 121 AGRYVNGILAAMQK 134 >gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens SM101] gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101] Length = 135 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + + +R L + + + + D +++ + + Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMENEDISK-DDLDLAYIKSGLLGIEENKEK 60 Query: 63 IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D++++ ++ L R +LR+S +IL+ DV ++ A+E K+ +N+ Sbjct: 61 LDSLIESQLVKWKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELCKKYSDNKSV 120 Query: 121 AKLVNSILRRVSRE 134 + +N +L +V + Sbjct: 121 S-FINGVLDKVYKN 133 >gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus SB 1003] gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus SB 1003] Length = 165 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 8/136 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS------AFRLLSQRDQILVRAIVNVTL 57 ARL + L + + + L++ D L R +++ + Sbjct: 21 RSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVTDEGEELAEGDYDLFRRLLDDAV 80 Query: 58 RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 + +ID D L + R L+ L R + A+++ V++ VE A+ Sbjct: 81 MWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEMVNPATPIKVVINEFVEVARAFF 140 Query: 116 ENRHFAKLVNSILRRV 131 K VN++L + Sbjct: 141 PEGKETKFVNAVLDHM 156 >gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii IMSNU 11154] gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii IMSNU 11154] Length = 138 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 12/135 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 + +R + +L + + S + L D+ + R +VN L Sbjct: 5 TRHESRQAAFQVLFALEKDPQSNNIDKLYDIVLAGKDYDDYLPR-------LVNGILGTK 57 Query: 61 PRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +D + L ++ R + +LR++V ++L V +D A+ K + Sbjct: 58 TELDEQIAAHLADGWAINRLNKADLIILRLAVYELLNNLVPYKVAIDEALILTKTF-SDE 116 Query: 119 HFAKLVNSILRRVSR 133 K VN +L+ + Sbjct: 117 DSRKFVNGVLKNFAP 131 >gi|308161305|gb|EFO63758.1| tRNA/rRNA cytosine-C5-methylase [Giardia lamblia P15] Length = 458 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 71/426 (16%), Positives = 130/426 (30%), Gaps = 55/426 (12%) Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQ--LLRVSVAQILYLDVADYAVVDL-AVEQAK 112 LR L D +L + +L+ +L ++ +L + + A Sbjct: 41 ALRALGHAD-LLKDTISRLAKADDTTLEHNHVLVMATEALLGDGIPHRRRRLEGSTRDAL 99 Query: 113 RDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDAC 172 R + ++++ + + +P F+ L+ E Sbjct: 100 RIVKTHM--PEFACLIKKPDTDSAKSRSATNIAPYLPRAFRVNLDKREYPEINDEADRMR 157 Query: 173 ISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAEGVWWVQDASA 230 ++ + + + ++L + T LK+ + F + + Sbjct: 158 LTLEAEEQCILRVQDQLQNELPSEAKLTRHPVLKDFLLVSAPDLKIPFHNLWVVKTNQAV 217 Query: 231 SIPVQLFGTL--------------NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276 + L N+ VLD+CAAPG KT Q + V A D+ +RR Sbjct: 218 MQSLASGLPLAALREAAIKLLPSLKNVCVLDVCAAPGSKTFQACNYFSGVHANDLDRRRC 277 Query: 277 EKLRCNLDRLHLY--------------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTI 322 E + L +I + ++ D CSS+G Sbjct: 278 EIILRRGKELISTKAVRSTNVVAGLPINSLVITSNDALRLKDTGCQIIVCDPTCSSSGIY 337 Query: 323 RRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQDSEE 375 L + D + + FQ KLL + K P ++V +S CS+ ++E+ Sbjct: 338 SNKDASLAEAAGVAKTHADPAELSQFQIKLLTKL--LTKFPSALLVSYSTCSIHSVENED 395 Query: 376 VVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFA 435 VV V+ + L +A + P DGFFA Sbjct: 396 VVAAVMGDETGISKEWELWNALPEWPLRGKK----------PYTHCLRADKRQKTDGFFA 445 Query: 436 VALRRL 441 R Sbjct: 446 AIFVRK 451 >gi|159116195|ref|XP_001708319.1| tRNA/rRNA cytosine-C5-methylase [Giardia lamblia ATCC 50803] gi|157436430|gb|EDO80645.1| tRNA/rRNA cytosine-C5-methylase [Giardia lamblia ATCC 50803] Length = 458 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 72/427 (16%), Positives = 131/427 (30%), Gaps = 57/427 (13%) Query: 56 TLRFLPRIDAV---LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL-AVEQA 111 LR L D + + + + +++ +L ++ +L V + A Sbjct: 41 ALRALGHADPLKDTISRLANADDTTLEHN--HVLVMATEALLGDGVPHRRRRLEGSTRDA 98 Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDA 171 R + +L++ ++ + +P F+ L+ E Sbjct: 99 LRIVKTHM--PEFACLLKKPDATSVKSHNATSATPYLPRAFRVNLDKREYPEINDEADRM 156 Query: 172 CISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKEL--PESIVSLPGFAEGVWWVQDAS 229 ++ + V + ++L T LK+ + F + + Sbjct: 157 RLTLEAEEQCVLRVQDQLQNELPPEAKLTRHPILKDFLLISAPDMKIPFHNLWVVKTNQA 216 Query: 230 ASIPVQLFGTL--------------NNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRR 275 + L N+ VLD+CAAPG KT Q + V A D+ +RR Sbjct: 217 VMQSLASGLPLAALREAAIKLFPSLKNVCVLDVCAAPGSKTFQACNYFSGVHANDLDRRR 276 Query: 276 LEKLRCNLDRLHLY--------------AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGT 321 E + L +I + ++ D CSS+G Sbjct: 277 CEIILRRGKELVSTKAVRSANVVAGLPINSLVITSNDALRLKDTGCQIIVCDPTCSSSGI 336 Query: 322 IRRHPDVL-----WTRDTDDIVKSACFQRKLLLQGISFVK-PGGIVV-FSNCSLDKQDSE 374 L + D + + FQ KLL + K P ++V +S CS+ ++E Sbjct: 337 YSNKDASLAEAAGVAKTHADPAELSQFQIKLLTKL--LTKFPSALLVSYSTCSIHSVENE 394 Query: 375 EVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 +VV V+ + L +A + P DGFF Sbjct: 395 DVVAAVMEDETGISKEWELWNALPEWPLRGKK----------PYTCCLRADKRQKTDGFF 444 Query: 435 AVALRRL 441 A R Sbjct: 445 AAIFVRK 451 >gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411] gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411] Length = 133 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 6/132 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR V+ + G D+ + +++ T++ L Sbjct: 2 SRRKARTVAVQYIYSKEFGNEDSPYAFMDFVGHPKKED----DKAFAKKLIDGTIQNLDI 57 Query: 63 IDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV-DLAVEQAKRDKENRHFA 121 I+ ++ + + +LRV + ++L+L A VV + V AK + Sbjct: 58 INNLIKKYASAGDDIMSLIDKSILRVGIYELLFLREAHPVVVINEYVNIAKELSK-ESSK 116 Query: 122 KLVNSILRRVSR 133 LVN+IL +V + Sbjct: 117 SLVNAILDKVYK 128 >gi|297566828|ref|YP_003685800.1| NusB antitermination factor [Meiothermus silvanus DSM 9946] gi|296851277|gb|ADH64292.1| NusB antitermination factor [Meiothermus silvanus DSM 9946] Length = 156 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 13/139 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--------DQI---LVRAI 52 AR ++ +L +SL + + S DQ R + Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61 Query: 53 VNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 + R ID VL + S + + +LR++ ++LY ++++AV+ A Sbjct: 62 LEGYQRHESEIDEVLGNTIQGWSFGQMAKTDLAVLRLAAYEMLYEPTPYAPLIEVAVKIA 121 Query: 112 KRDKENRHFAKLVNSILRR 130 KR + VN +L R Sbjct: 122 KRY-GGEDSGRFVNGVLGR 139 >gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii SDF] gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter baumannii] Length = 149 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + ++A + D ++ + +DA+L V Sbjct: 19 AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L + LR+ ++ +L++ V+D A+E AK K +N +L Sbjct: 76 LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|156544361|ref|XP_001607372.1| PREDICTED: similar to Nop2p, putative [Nasonia vitripennis] Length = 496 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 23/235 (9%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLR 280 ++V D ++ +PV +VLD+CAAPGGK ++ + A D+ + R+ ++ Sbjct: 268 YFVLDGASVLPVLSLDLQPGDTVLDMCAAPGGKIMTALQTLNARLIIANDIQESRINRIN 327 Query: 281 CNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332 + L I + DA K +++ +LVD PC++ ++ + Sbjct: 328 RFMQELLPSIGDWDKRFFITQSDARYIEDKNIYNKILVDVPCTTDRHVLHEDDNNIFKST 387 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS---SPIPVE 389 + ++ Q +L + GG VV+S CSL ++ VVQ L+ + Sbjct: 388 RVKERLRLPEIQCDILKNALKIAILGGTVVYSTCSLSPIQNDGVVQMALKKAFEESNVLY 447 Query: 390 LVPLNSAYWKSIDMAMALSPEG---WIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +V + K + G + P + + R+ Sbjct: 448 VVKDQTRALKPLQFLYNFGDNGLKYGHIVVPSKSRNWGP-------MYFCKMVRV 495 >gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor [gamma proteobacterium HdN1] gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor [gamma proteobacterium HdN1] Length = 136 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 20 RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKK 79 SL+ + D+ R + D +++ + +D+ + L + Sbjct: 1 MTGDSLSSIEAQFRTDNDMR---KTDVAYFHELLHGVPSCVADLDSAISPFLDREITELD 57 Query: 80 YSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 + +LR++ ++L D+ ++ +E AK K VN +L +V++ Sbjct: 58 QVERAILRLATYELLKRQDIPYRVAINEGIELAKTFGATES-HKYVNGVLDKVAQRLRYH 116 >gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC 23834] gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC 23834] Length = 145 Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 12/121 (9%), Positives = 35/121 (28%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L ++ + ++ + ++ D L AI Sbjct: 7 TPRRRAREFAVQALYQAALNQLP-DAEVAKNIRENEY--FAKADNELFTAIFFGVQAKRR 63 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 + ++ +L +L + ++ + + +++ A+E K Sbjct: 64 ELMQIIRPLLDRDEKDLSPIECAVLLAAAFELRDMPETPYPVIINEAIEVTKTFGGIDGH 123 Query: 121 A 121 Sbjct: 124 K 124 >gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus pneumoniae R6] gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae MLV-016] gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6] gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae MLV-016] Length = 146 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 14 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLIDLVSGVQAKKEE 71 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 72 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 130 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 131 ARFINGLLSQF 141 >gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus pneumoniae TIGR4] gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae TIGR4] gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus pneumoniae D39] gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP3-BS71] gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP6-BS73] gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP11-BS70] gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP14-BS69] gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP19-BS75] gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP23-BS72] gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1873-00] gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC0288-04] gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC3059-06] gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus pneumoniae Hungary19A-6] gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus pneumoniae G54] gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae ATCC 700669] gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus pneumoniae P1031] gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus pneumoniae Taiwan19F-14] gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus pneumoniae CCRI 1974] gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus pneumoniae CCRI 1974M2] gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus pneumoniae TCH8431/19A] gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200] gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4] gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae D39] gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP11-BS70] gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP14-BS69] gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP19-BS75] gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP3-BS71] gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP6-BS73] gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae SP23-BS72] gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae Hungary19A-6] gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1873-00] gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC0288-04] gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC3059-06] gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae G54] gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae ATCC 700669] gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae P1031] gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae Taiwan19F-14] gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus pneumoniae TCH8431/19A] gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae OXC141] gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200] gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA04375] gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA41317] gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA47368] gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA47901] Length = 140 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-DVQLPAFLIDLVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|195996617|ref|XP_002108177.1| hypothetical protein TRIADDRAFT_52388 [Trichoplax adhaerens] gi|190588953|gb|EDV28975.1| hypothetical protein TRIADDRAFT_52388 [Trichoplax adhaerens] Length = 358 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 120/312 (38%), Gaps = 37/312 (11%) Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF---DIETWAHKLNAVMLPT 200 S IP + + + + + DL DI K+ + Sbjct: 19 MASGIPRYVRVNTLKMTKVKAIERFIANGFQYIPSDLVYNAGTVDITKLREKIFTSDIHI 78 Query: 201 GGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ-- 258 + + + + G +QD ++ IP ++D CAAPG KT+ Sbjct: 79 ENLLVLPPKSDLHDNEMYLNGEVVLQDKASCIPAFTLNPPPQSCIIDACAAPGNKTSHLA 138 Query: 259 -LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCS 317 +I + K+ A D+S R++ +R LD+ + + + +L+D CS Sbjct: 139 SIIGNVGKIYAFDISPNRIKTMRELLDKAGV-NVM----------EYEDVEYILLDPSCS 187 Query: 318 STGTIRRHPDVLWTRDTDDIVKS-----ACFQRKLLLQGISF--VKPGGIVVFSNCSLDK 370 +G + R ++ + K+ A FQ K L Q +SF VK VV+S CS++ Sbjct: 188 GSGIVDRGDINAESKKLCNANKNRLQSLADFQLKALKQALSFPSVKK---VVYSTCSMNV 244 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGM 430 +++EEVV+ L+ +L+P+ W M+ + R +P + Sbjct: 245 EENEEVVEAALKVFGNKYKLIPV-LEDWPYRGMSGYAHWKFMFRSSP---------KTST 294 Query: 431 DGFFAVALRRLI 442 GFF R+ Sbjct: 295 TGFFVALFSRIT 306 >gi|154292352|ref|XP_001546751.1| hypothetical protein BC1G_14665 [Botryotinia fuckeliana B05.10] gi|150846144|gb|EDN21337.1| hypothetical protein BC1G_14665 [Botryotinia fuckeliana B05.10] Length = 252 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 33/187 (17%) Query: 267 TALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------------LFDAVLV 312 A D +R L L RL + DA + K FD +L Sbjct: 70 IANDADYKRSHMLIHQLKRLSSPNLIVTNHDATMFPSIKLPPTPENPATNRYLKFDRILA 129 Query: 313 DAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSL---- 368 D PCS GT R++ ++ + + + Q ++L++ + +K GG VV+S CSL Sbjct: 130 DVPCSGDGTTRKNVNLWKDWNPGNALGLYVTQVRILVRALQMLKVGGRVVYSTCSLKTWT 189 Query: 369 ----------DKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITP 417 + +QK + + L + D +M+ P + +R+ Sbjct: 190 VMDKKGRIWKSWAE----LQKFIAENGQDDWTGRLVEGMFPPTDESMSSVPLDQCMRVYA 245 Query: 418 DMLEKID 424 + + Sbjct: 246 HLQDTGW 252 >gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M] gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M] Length = 173 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 3/133 (2%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + L+ + + + DL + + A+ + Sbjct: 11 KGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIDQHAA 70 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L +L R + +LRV+V ++LY DV + VD AVE AK Sbjct: 71 HIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKE-LSTDD 129 Query: 120 FAKLVNSILRRVS 132 VN +L +V Sbjct: 130 SPSFVNGVLGQVM 142 >gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084] gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084] Length = 165 Score = 73.4 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL S+ +L+ +Y + L ++ + Sbjct: 10 RTLARSQALQLLFQAEATGRSVFEVLEGDYALTQG-PLDP----FGESLARGVDDMRTDL 64 Query: 64 DAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 DA++ S+ R + LLR+++ ++L +D VA +D VE AK + Sbjct: 65 DAIIAVTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELAKAY-GTAESS 123 Query: 122 KLVNSILRR 130 + VN +L R Sbjct: 124 RFVNGLLGR 132 >gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp. 2_1_36FAA] gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp. 2_1_36FAA] Length = 141 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 18/129 (13%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-------LVRAIVNV 55 S + R + L + + F L +++ + +VN Sbjct: 8 SRRDLRERAFQALMSLEYD--------EDIVEACRFAYLHDKEEEEQVELPIFLLNLVNG 59 Query: 56 TLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAK 112 ++ +D + L +L R + +LR+ + ++L Y + V+ A+E AK Sbjct: 60 VMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAIELAK 119 Query: 113 RDKENRHFA 121 + + + Sbjct: 120 KFSDEKSSK 128 >gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814] gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814] Length = 163 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 9/132 (6%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTLRFLP 61 ARL + L + + + +++ D R + D + R V + L Sbjct: 23 ARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGRPIEAADPEIFRNTVEGVIESLD 82 Query: 62 RID-AVLDFVLI-SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 I+ A++ + + R + + +LR V +++ D+ ++D V A ++ Sbjct: 83 DINLAIVKRLADGWKIERLDATSRAILRAGVYELMKRDDLPAQIILDEYVSIAHAFFDDA 142 Query: 119 HFAKLVNSILRR 130 + +N++L Sbjct: 143 E-PRFINALLEN 153 >gi|302847922|ref|XP_002955494.1| hypothetical protein VOLCADRAFT_43107 [Volvox carteri f. nagariensis] gi|300259117|gb|EFJ43347.1| hypothetical protein VOLCADRAFT_43107 [Volvox carteri f. nagariensis] Length = 152 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA---QLIVSGAKVTALDVSKRRLE 277 G +Q+ + + VLD+CAAPGGKT Q++ + ++ ALD S ++ Sbjct: 1 GWVMLQNLPSVVAALALCPPPGSRVLDMCAAPGGKTTLLAQIMGNLGEIVALDRSHAKVS 60 Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYC--PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTD 335 ++R + + E P + FD +L+DAPCS+ G P + Sbjct: 61 EIRSLTGEMGATCVEDGEGSPRPAPSFPPEYFDHILLDAPCSALGL---RPRLQQQSSAA 117 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 + + QR+L + ++ GG +V+S C+++ Sbjct: 118 YLRQCGAAQRRLGDAAVRLLRTGGSLVYSTCTINP 152 >gi|327293461|ref|XP_003231427.1| hypothetical protein TERG_08212 [Trichophyton rubrum CBS 118892] gi|326466543|gb|EGD91996.1| hypothetical protein TERG_08212 [Trichophyton rubrum CBS 118892] Length = 527 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 81/478 (16%), Positives = 140/478 (29%), Gaps = 95/478 (19%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDL 106 + A++ ++ I V+D I + K + LL V + +A + + Sbjct: 34 AQIYALIVEVAKYNECIKEVIDNAGILAHESKLTPVLSLLLVHDFLLSKRGIAAPS--NH 91 Query: 107 AVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVL 166 + A ++R ++L +RR K EL ++ + + F R L Sbjct: 92 PLRLAVERHKSRLNSELTKLRVRRGCASKEELKHKLVQDQQVMKTFSPRWIRINNVLTTL 151 Query: 167 AISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGVWW 224 Y ++ ++ L L + I S + EG Sbjct: 152 DREMKSTFAGYESVSSLSELAEAIADEKKYCLDEHIPDLMAISRDIDITSSYAYKEGRLI 211 Query: 225 VQDASASIPVQLFGTLNNLSV----LDLCAAPGGKTAQL--------IVSGAKVTALDVS 272 +QD ++ P L + +D CAAPG KT L ++V +LD S Sbjct: 212 LQDKASCFPAYLLLGDHPGRWKGDLIDGCAAPGNKTTHLASLLSSAPEKQKSRVFSLDAS 271 Query: 273 KRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHP 326 R + L+ + + + +D CS +G +R Sbjct: 272 HSRSKILQTMVKKAGASNIVTVLPGQDFLALDPTDTRFQHVTALLLDPSCSGSGITKRED 331 Query: 327 D----------------------VLWTRDTDDI----------------------VKSAC 342 + + K A Sbjct: 332 VPQLDLPKSKSELTLATTAGGKGSKNRKRKRENPADSSSPGSPTTEAKEDESERLAKLAN 391 Query: 343 FQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVL-----RSSPIPVELVP---- 392 Q +++ FV P V +S CS+ +++E+VV +VL +S +EL Sbjct: 392 LQSQIVEHA--FVFPAATRVTYSTCSIHHEENEDVVARVLASSIAKSRGWRLELRSEQAR 449 Query: 393 ----------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L +S E IR P G GFF R Sbjct: 450 GLRNWHHRGILPDGTSESPPQLSPEQVEACIRCWP-------AGDEGTGGFFVAIFVR 500 >gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium acnes HL097PA1] Length = 261 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 7/122 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L +L + + + + +V Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVAATQV 91 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D+VL L +L R + L R+ +IL+ D + AV+ A+E ++ + Sbjct: 92 GLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDS 151 Query: 120 FA 121 Sbjct: 152 AP 153 >gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus RM3267] gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus RM3267] Length = 131 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 6/130 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + R LL S + + + + L ++ + L Sbjct: 1 MATRHQVRQAVVSLLYAREMGSCSE----EFVEEFLEEKKIRNDQRSLALSLFHGILEHA 56 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +DA+L+ L + + +LR+ ++ + +++ +E K Sbjct: 57 DGLDALLNARLKEWKINEIGSIERAVLRLGAYEMKFTPTDKAVIINEGIELGKE-LGGDS 115 Query: 120 FAKLVNSILR 129 K +N +L Sbjct: 116 APKFINGVLD 125 >gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202] gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes SK187] gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes J165] gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes SK137] gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202] gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes SK187] gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes J165] gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes SK137] gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes HL013PA1] gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes HL074PA1] gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA1] gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes HL110PA2] gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA2] gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes HL083PA1] gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes HL025PA1] gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes HL059PA1] gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes HL046PA2] gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA1] gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA2] gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes HL063PA1] gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes HL063PA2] gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes HL007PA1] gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes HL056PA1] gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes HL086PA1] gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA4] gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA1] gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes HL050PA3] gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes HL036PA3] gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes HL067PA1] gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes HL027PA1] gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA1] gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA2] gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes HL082PA1] gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes HL037PA1] gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes HL053PA1] gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes HL045PA1] gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes HL072PA2] gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA1] gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA2] gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes HL005PA3] gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes HL053PA2] gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes HL078PA1] gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes HL027PA2] gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes HL002PA3] gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes HL072PA1] gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes HL038PA1] gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes HL059PA2] gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes HL046PA1] gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes HL030PA1] gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium acnes HL096PA2] gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium acnes HL096PA3] gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes HL013PA2] gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes HL043PA2] gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes HL043PA1] gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA3] gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes HL092PA1] gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes HL083PA2] gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes HL025PA2] gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes HL087PA1] gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes HL020PA1] gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium acnes HL099PA1] gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266] Length = 261 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 7/122 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L +L + + + + +V Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVAATQV 91 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D+VL L +L R + L R+ +IL+ D + AV+ A+E ++ + Sbjct: 92 GLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAVISEAIELSEEFSTDDS 151 Query: 120 FA 121 Sbjct: 152 AP 153 >gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum ATCC 33209] gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum ATCC 33209] Length = 143 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 8/134 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L ++ +S +L + ++++ I++ + Sbjct: 9 SARSKARRRALDILFEAGQRDVSAAEVL-KLRRERTDQIINP----YSVDIIDGVGQKQE 63 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID L +L R LR+ ++LY DV D V AVE AK+ Sbjct: 64 EIDEFLQTYAQGWTLERMPAVDLIALRIGAWELLYNDDVPDAVAVSEAVELAKQ-LSTDE 122 Query: 120 FAKLVNSILRRVSR 133 + +N +L R+ + Sbjct: 123 SPQFINGLLGRLQQ 136 >gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC BAA-1498] Length = 156 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 59/144 (40%), Gaps = 9/144 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + I ++ + + D R+I+ Sbjct: 14 NKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDGNQYLDADFQWFRSIIVGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 +R ++D +L L +L R +L+ +LR + +++ + +++ ++ AK Sbjct: 74 VRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKGMPIAVILNEYIDIAKA 133 Query: 114 DKENRHFAKLVNSILRRVSREKIE 137 +N +LVN++L +++E + Sbjct: 134 FFDNDE-PRLVNAVLDSIAKEMCQ 156 >gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328] gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC 53516] gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna BVS033A4] gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328] gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC 53516] gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna BVS033A4] Length = 137 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + L+ + ++ ++ +++ D + IV + + Sbjct: 2 SRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCK---YQNINKNDIEFFKEIVLNFIEHIDD 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 I +++ +L R +L+V V +ILY++ D ++ AVE AK + + Sbjct: 59 IVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSY 118 Query: 121 A 121 + Sbjct: 119 S 119 >gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1] gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1] Length = 149 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + ++A + D ++ + +DA+L V Sbjct: 19 AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIALRDDLDALLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L LR+ ++ +L+V V+D A+E AK K +N +L Sbjct: 76 LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649] gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649] Length = 136 Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDS-AFRLLSQRDQILVRAIVNVTLRF 59 M + +R + LL +++++ T LL L++ +V + Sbjct: 1 MGARTKSRRRAIDLLFEAEQRQVNATELLKERLATPVTEAPLNE----FTANLVTGVVDN 56 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVAD 100 +I+ +L S+ R + +LRV ++L+ +V + Sbjct: 57 WSQINDLLATYSQGWSVERMPAVDRAILRVGAFEVLFGEVPE 98 >gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes HL030PA2] Length = 261 Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 7/122 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L +L + + + + +V Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLA-----ARPGVFTNPVRPFAADLVRGVAATQV 91 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D+VL L +L R + L R+ V +IL+ D + AV+ A+E ++ + Sbjct: 92 GLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHTDTPNPAVISEAIELSEEFSTDDS 151 Query: 120 FA 121 Sbjct: 152 AP 153 >gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis UMN179] gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis UMN179] Length = 145 Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + S + E D + R + N T+ L Sbjct: 12 SKRRRARECTVQALYSWFISKNSPESI---ELDLVTNDETKGADVVYFRKLFNGTVNNLD 68 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ++ L + + +L + ++ Y D+ V++ A+E AK Sbjct: 69 NLEQEYASFLDRKIEELGTIERAILDCATFELKYVDDIPYKVVINEAIEVAKTF-GASDS 127 Query: 121 AKLVNSILRR 130 K +NSIL + Sbjct: 128 HKYINSILDK 137 >gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho melanesiensis BI429] gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429] Length = 141 Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 7/131 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 KS R L + +L+ + L Q L + + Sbjct: 3 KSRHKMREAIFKSLFQWDFNK---EEILEEISKEH-IVSLEPNLQELAVNYLKGIRENID 58 Query: 62 RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L + +L R + + +LR+ +++Y D+ +D +E K + Sbjct: 59 VIDEIISKYLKNWTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMIELGKTY-GTEN 117 Query: 120 FAKLVNSILRR 130 K VN +L + Sbjct: 118 SGKFVNGVLDK 128 >gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028] gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028] Length = 154 Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 5/126 (3%) Query: 8 RLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRIDA 65 R + ++ V +++S L+ +R +V ID Sbjct: 9 RRFAFQVIYSLVFGQKMSKDSLIKSFDNFWTEEEFDMERQDSYAWTLVEGVFDNYDSIDE 68 Query: 66 VLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 ++ L R +LR+S+ ++L+ D+ ++ A+E AK D + + Sbjct: 69 IITQHSQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEAIELAK-DFGDDNSKTF 127 Query: 124 VNSILR 129 VN +L Sbjct: 128 VNGVLD 133 >gi|311259386|ref|XP_003128070.1| PREDICTED: putative methyltransferase NSUN4-like [Sus scrofa] Length = 383 Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 101/298 (33%), Gaps = 31/298 (10%) Query: 112 KRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY---------GK 162 ++ + + A R++ + ++ + + P L Sbjct: 24 RQRHKKKWAATEPKFPATRLALQNFDMTYSMQFGDLWPSIRVSLLSEQKYGALVNNFAAW 83 Query: 163 ERVLAISDACISPLYI-----DLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPG 217 + V + + ++ + + A A + P Sbjct: 84 DHVSTELEQLNAKDFVNEAAFRGEPEPEDGQAAAPPAAWSCSPNLRCFTFTRGDVSRFPP 143 Query: 218 FAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAK--VTALD 270 G +++ DA++ +PV G +VLDLCAAPGGKT ++ +G + A D Sbjct: 144 ARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLAMLQTGCCRNLAAND 203 Query: 271 VSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST--G 320 +S R +L L + + D VLVD PC++ Sbjct: 204 LSTSRTGRLLKVLHSYVPQDVRERNRVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHS 263 Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 ++ + Q +LL G+ KPGG VV+S CSL +E VVQ Sbjct: 264 LHEEENNIFQRSRKRERQMLPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ 321 >gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus] Length = 144 Score = 73.0 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 3/136 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ +AR + +L + + + + + + + + +V T+ + Sbjct: 1 MRYRKSARDTAFLVLYRWDLRGDKPSEIFKEVVEEKNIQNKNTYE--YAKKLVETTVNNI 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 IDA+++ L S+ R Y + LR+ VA++L+L + V + + + + Sbjct: 59 SEIDAIIEKHLKGWSIDRLGYVERNALRLGVAELLFLKSQEPGRVFIDIIDIVKKFTDEK 118 Query: 120 FAKLVNSILRRVSREK 135 AK VN +L + R Sbjct: 119 AAKFVNGVLSAIYRSF 134 >gi|307178234|gb|EFN67019.1| Putative methyltransferase NSUN4 [Camponotus floridanus] Length = 459 Score = 73.0 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 10/171 (5%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLR 280 +++ D ++ +PV ++LD+CAAPGGKT + + + A DVS+ R++K+ Sbjct: 277 YYLLDGASVLPVLALDLQPGDAMLDMCAAPGGKTLSALQTLLPHTIVANDVSQSRVKKIH 336 Query: 281 CNLDRLHLYA------EDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332 +D+ + DA K L++ +LVD PC++ + ++ + Sbjct: 337 NVIDQFVADIGQWQDRLHVTGRDARYIDDKDLYNKILVDVPCTTDRHVLHSDNNNIFKPQ 396 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 + ++ Q +L + + GG VV+S CSL ++ VV L+ Sbjct: 397 RIRERLQIPELQAAILTNALKIISVGGTVVYSTCSLSPIQNDGVVGMALKK 447 >gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii AB056] gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii AB058] gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii AB059] Length = 135 Score = 73.0 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + ++A + D ++ + +DA+L V Sbjct: 19 AVQGIYEWQMSHNPVHEIEARTRAENAMHKV---DLNYYHELLTQVIAQHEDLDALLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L + LR+ ++ +L++ V+D A+E AK K +N +L Sbjct: 76 LDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus 1_2_62CV] gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus 1_2_62CV] Length = 141 Score = 73.0 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 4/132 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 + R + L + ++ + D S + + +V + Sbjct: 8 ARRELRERAFQALMSLEYEKDIVEACRFAYLYDKDMTNDSDVELPAFLLNLVMGVEQSKN 67 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D L L +L R + +LR+ + ++ D ++ A+E +K+ + Sbjct: 68 ELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFDTPQLVAINEAIELSKKF-SDEK 126 Query: 120 FAKLVNSILRRV 131 +K +N IL + Sbjct: 127 SSKFINGILSKF 138 >gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana VS116] gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana VS116] Length = 145 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 59/142 (41%), Gaps = 5/142 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ + + + + ++VN T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNN 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID ++ + L SL R +LR+ V + + + + V+D A+ AK+ Sbjct: 61 LEHIDNLIRDISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREKIEL 138 +++ K +N IL + + Sbjct: 120 SKNSYKFINGILDALLKNMENC 141 >gi|296207856|ref|XP_002750820.1| PREDICTED: putative methyltransferase NSUN4 [Callithrix jacchus] Length = 384 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 94/268 (35%), Gaps = 29/268 (10%) Query: 197 MLPTGGIRLKELPESIVSLPGFAEG-----VWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + P +++ DA++ +PV G VLDLCAA Sbjct: 124 ACSPNLRCFTFAKGDVSRFPPARPSNLGVMDYYLMDAASLLPVLALGLQPGDIVLDLCAA 183 Query: 252 PGGKTAQLIVSGAK--VTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF-- 307 PGGKT L+ +G + + D+S R+ +L+ L + + Sbjct: 184 PGGKTLALLQTGCCRNLASNDLSTSRIARLQKILHSYVPQEIRDGNQVRVTSWDGRKWGE 243 Query: 308 ------DAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGG 359 D VLVD PC++ ++ + Q +LL G+ KPGG Sbjct: 244 LEGDTFDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQMLPLLQVQLLAAGLLATKPGG 303 Query: 360 IVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIR 414 VV+S CSL +E VVQ + I V++ L +D S E Sbjct: 304 HVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRLFMDTFCFFSSCEVGEL 363 Query: 415 ITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + P++ + + RL Sbjct: 364 VIPNLTANFGP-------MYFCKMCRLT 384 >gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3] gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3] Length = 169 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 5/136 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L V + I+L + +++ Sbjct: 1 MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILA--DPNAMKFFNLLLSSIKAH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + + R + ++R+++ +ILY D+ ++ A+E AK+ Sbjct: 59 REEIDNYIAQQTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNST 118 Query: 118 RHFAKLVNSILRRVSR 133 +K VN IL + Sbjct: 119 DKSSKFVNGILDAIFN 134 >gi|226502218|ref|NP_001150625.1| NOL1/NOP2/sun family protein [Zea mays] gi|195640662|gb|ACG39799.1| NOL1/NOP2/sun family protein [Zea mays] gi|219884197|gb|ACL52473.1| unknown [Zea mays] Length = 408 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 21/160 (13%) Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR-HPDVLWTRDTDDI--------VKSACF 343 + D +D VLVDA C+ G+I+ W + D Sbjct: 261 VFCPSVDDEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKSLDRRVLDAERTENLLQL 320 Query: 344 QRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDM 403 Q LL G +K GG +V+S CSL +E VVQ+ L + P + W Sbjct: 321 QLHLLTNGFKLLKTGGSLVYSTCSLTVAQNECVVQQFLSTHPSADLQKINLADNWPCRSG 380 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQ 443 + + +R P + + G F +L Sbjct: 381 GIPKT----LRFDPAVSQTS--------GLFVAKFCKLPT 408 >gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus HD100] gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus HD100] Length = 135 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 10/140 (7%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + AR ++ +L + + + + L IV Sbjct: 1 MKLTARRQARELALQVLFQTE----FAPQISYQTFLEVFEQSLDPEVITYADLIVTGVKS 56 Query: 59 FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDK 115 ID+ + + R + +LR++V ++ + + + ++ AVE AK+ Sbjct: 57 NKEAIDSKIQASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEIAKKY- 115 Query: 116 ENRHFAKLVNSILRRVSREK 135 VN +L +V + Sbjct: 116 GTSDSGSFVNGLLDQVGKAH 135 >gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM 13280] gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM 13280] Length = 216 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 21/217 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + +L +++S+ +L +Y S L I RI Sbjct: 10 RTLARSQALQILFQSEMRKVSVEDVLAGDYTLSKGPL-----APYAIEIARGVSANRDRI 64 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL--DV-ADYAVVDLAVEQAKRDKENRH 119 D+ L V + +L R + + LLR +V ++ + D V++ AVE AK Sbjct: 65 DSALRAVSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVVINEAVEIAKAY-GTDE 123 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 A VN +L R+ R++ +P ++ Sbjct: 124 SAGFVNGVLGRIVRDR-----------HLPSLQHVACTITAEDAEAACLAALWFEIDPKR 172 Query: 180 LTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLP 216 L + + A + A ++ + I + P Sbjct: 173 LAAEEEAARAAEEARARFEADDYGFAEDDLDHIFNDP 209 >gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2] gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2] Length = 159 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS ARL + L + ++ + +++ D RA++ Sbjct: 11 MKS--AARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYDEGEMTEGDVDTFRALMEK 68 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + ID + D L + R + + L R + A++ D V+ V A+ Sbjct: 69 AVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELTLQDTPPKVVISEFVSVAEA 128 Query: 114 DKENRHFAKLVNSILRRV 131 + K VN++L + Sbjct: 129 FSADGKEPKFVNAVLDHM 146 >gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP18-BS74] gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae 670-6B] gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP18-BS74] gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae 670-6B] gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA17545] Length = 140 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDR-EYTDVQLPAFLIDLVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|313215201|emb|CBY42870.1| unnamed protein product [Oikopleura dioica] Length = 448 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 36/219 (16%) Query: 246 LDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCP 303 LD+CAAPGGKTA +S K A D R+E L+ N ++ +II D+ Sbjct: 243 LDMCAAPGGKTAYLLNRLSNDKWYAADK-PSRVEMLKKNTSKI-ETNVEIIAGDSTKMNF 300 Query: 304 KK---------LFDAVLVDAPCS------------STGTIRRHPDVLWTRDTDDIVKSAC 342 K D +L++ S + T R V I Sbjct: 301 KNEKFDGILLERVDKILLETLPSSLKFSTRISDAPCSATGSRPKPVNLHISERQISSYQK 360 Query: 343 FQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSID 402 QRKL+ + + +KPGG++ +S CS+ ++++E + + + + + + + + Sbjct: 361 LQRKLIAEAVRLLKPGGVLCYSTCSVRAEENQENTKLIESKYGLQLLEENSFNPFSEKSE 420 Query: 403 MAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + ++ RI ++ G++ L++L Sbjct: 421 LIGGIN-----RI------EVVDPLEDTIGYYCACLKKL 448 >gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 133 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R + LL + + L+ + + + D ++ I+ Sbjct: 1 MNRKL-SREKAMELLFGMTLNTDNCEETLENFIDNYE-SDIKELDITYIKRILIGVENNK 58 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L + R +LR++V ++L+ ++ + ++ A+E K+ + + Sbjct: 59 DNIDEAISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEK 118 Query: 119 HFAKLVNSILRR 130 + +N +L Sbjct: 119 SVS-FINGVLDN 129 >gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1] gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance protein B) [Acinetobacter sp. ADP1] Length = 149 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + R + + ++A + D ++ + +D +L V Sbjct: 19 AVQGIYEWQMSRNPVHEIEARTRVENAMHKV---DLGYYHELLTQVVAQHETLDTLLVPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L LR+ ++ +L++ V+D A+E AK K +N +L Sbjct: 76 LDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266] gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266] Length = 165 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 5/136 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + + ++ Sbjct: 1 MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQE--DPNAMKFFNLLLKNIKEH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A++LY D+ ++ A+E AK+ Sbjct: 59 REEIDQYIARHTFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFSST 118 Query: 118 RHFAKLVNSILRRVSR 133 +K VN IL + Sbjct: 119 DKSSKFVNGILDAIFN 134 >gi|332021457|gb|EGI61825.1| Putative methyltransferase NSUN4 [Acromyrmex echinatior] Length = 507 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQ--LIVSGAKVTALDVSKRRLEKLR 280 +++ D ++ +PV +VLD+CAAPGGKT + A D+ K R++++ Sbjct: 279 YYLLDGASVLPVLALDLQPGDAVLDMCAAPGGKTLSILQTFMPNIMVANDIQKSRVDRIN 338 Query: 281 CNLDRLHL------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332 +++ + E DA K +++ +LVD PC++ ++ + Sbjct: 339 KVINQYTAGIGQWEDRLRVTERDARFIDDKDMYNKILVDVPCTTDRHVLHSEENNMFKPQ 398 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + +K Q +L + + GG VV+S CSL ++ VV L+ + Sbjct: 399 RIRERLKLPELQAAILTNALKIISVGGTVVYSTCSLSPIQNDGVVGMALKKVWEETNFIM 458 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDG-FFAVALRR 440 + +++ L G + G + + R Sbjct: 459 IVKDMSEALSPLKCLYKFGNFGL--KYGHIAIPTLQNNWGPMYFCKIVR 505 >gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1087-00] gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae CDC1087-00] Length = 140 Score = 73.0 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + ++ Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTNVETACRFAYTHDREDT-DVQLPAFLIDLVSGIQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans Agy99] gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99] Length = 173 Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K AR + L+ + + + DL + + A+ Sbjct: 11 KGRHQARKRAVDLMFEAEARGLGPGEIADLRTELAETKPDVAPLHPYTAAVARGIGEHAA 70 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ID ++ L +L R + +LRV+V ++LY DV + VD AVE AK + Sbjct: 71 HIDDLITSHLQGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEAVELAKELSTDDS 130 Query: 120 FA 121 + Sbjct: 131 PS 132 >gi|171685978|ref|XP_001907930.1| hypothetical protein [Podospora anserina S mat+] gi|170942950|emb|CAP68603.1| unnamed protein product [Podospora anserina S mat+] Length = 605 Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 66/471 (14%), Positives = 128/471 (27%), Gaps = 83/471 (17%) Query: 47 ILVRAIVNVTLRFLPRIDAVLD--FVLISSLPRKKYSLQQLLRVSVAQILYLDV--ADYA 102 V A+ T ++ + V++ +L RK + +L V + + Sbjct: 36 AQVYALALETCKWSSVLKEVVENAELLKH--ERKLTPILSILLVHDHLLAKGGIALPASH 93 Query: 103 VVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGK 162 + ++++ K + + + + + AG P W + Sbjct: 94 GLRQSIDRHKARLTSEFTKARIRRKCPTIETFRDLIEAEYAGPVQHPRWIRVNAIKSTLD 153 Query: 163 ERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGV 222 ++ I + + L I + + +G Sbjct: 154 AQLETTFKGFEVVPSITQVMTAPRKK--KVLCLDGHIPNLIAVPPSVLDFTKTEAYKKGE 211 Query: 223 WWVQDASASIPVQLFGTLNNL-SVLDLCAAPGGKTAQ--------LIVSGAKVTALDVSK 273 +QD ++ P L ++D C+APG KT G + A + + Sbjct: 212 IILQDKASCFPAYLLDPRPEDGDIIDACSAPGNKTTHLAGILSERGFARGQTIHAFEKDR 271 Query: 274 RRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFD------AVLVDAPCSSTGTIRRHPD 327 R + L+ + A+ ++ + A+L+D CS +G + R Sbjct: 272 NRAKTLQKMIKIAGSDAKTVVHPAEDFLRADPQAEEYAHVGALLLDPSCSGSGIVGRDDV 331 Query: 328 V---------------------LWTRD------------------------------TDD 336 + Sbjct: 332 PELCLPEALASKNKPGNGKSGNKKRKRAEGEEEMKPAPAMMVDDDGQETVVSSEKDLQQR 391 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRSS------PIPVE 389 I A FQ +++L F P V +S CS+ K ++E V + L S + Sbjct: 392 IEALAAFQLQIVLHAFEF--PNARKVTYSTCSVHKGENEGVTIRALGSEVARRRGWRVLR 449 Query: 390 LVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 W+ EG + + G GFF V R Sbjct: 450 REEQVRGMWEWDVRGEVEGCEGDKEVAEGCVRAFRDDGRGTMGFFVVMFVR 500 >gi|164662793|ref|XP_001732518.1| hypothetical protein MGL_0293 [Malassezia globosa CBS 7966] gi|159106421|gb|EDP45304.1| hypothetical protein MGL_0293 [Malassezia globosa CBS 7966] Length = 382 Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 10/94 (10%) Query: 307 FDAVLVDAPCSSTGTIRRHP----------DVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 +D +L+DAPCSS I + + Q LL + ++ Sbjct: 245 YDRILLDAPCSSERHILHAYMRAQQSGTAAPEMLAWKPTMSRSMSKTQLALLRTAWAALR 304 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 PGG +V++ CSL +Q+++ VV+ L S+P L Sbjct: 305 PGGRLVYATCSLSEQENDHVVRAFLTSTPEAHVL 338 >gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105] gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105] Length = 162 Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 39/116 (33%), Gaps = 4/116 (3%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ L + + F + D+ ++++ ++ L + Sbjct: 23 SRELALQGLYQWFLNPTEVGEVDAHIRDAPGF---DKADREHYESLLHGSVHHLEDLMHQ 79 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121 + + + +L ++ ++ + ++ V++ AVE K F Sbjct: 80 IQPFIDRPWGELSPVEKAVLVLASHEMNTHAEIPYRVVINEAVELTKTFGGTDAFK 135 >gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens SK114] gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens SK114] Length = 142 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 5/123 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ + + + + + S + + L + T Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNMDEE---LFNKLFFGTQTH 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L V+ ++ + + +++ A+E K Sbjct: 58 AEEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFA 121 Sbjct: 118 GHK 120 >gi|303278784|ref|XP_003058685.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459845|gb|EEH57140.1| predicted protein [Micromonas pusilla CCMP1545] Length = 676 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 307 FDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNC 366 +DAVL D PCS GT+R+ PDVL Q + + + +PGG ++S C Sbjct: 335 YDAVLADVPCSGDGTLRKDPDVLRRWHPGLGNALHQTQLAIASRAAALTRPGGYFLYSTC 394 Query: 367 SLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 +L+ + E VV VL E + + + EG +R Sbjct: 395 ALNPVEDEAVVASVLL--GPGGERFEIVDGFMDDAGLQKMRRREG-VRTW 441 >gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter haemolyticus ATCC 19194] gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter haemolyticus ATCC 19194] Length = 149 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + + ++A + D ++ + +D +L V Sbjct: 19 AVQGIYEWQMSQNPVHEIEARTRVENAMHKV---DLNYYHELLTQVVAQHEALDELLVPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L LR+ ++ +L+V V+D A+E AK K +N +L Sbjct: 76 LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|213583914|ref|ZP_03365740.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 68 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK N R +++ + V+ + SL+ +L + ++ +D+ L++ + LR L Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLP-----PLQQKVADKDKALLQELCFGVLRTL 55 Query: 61 PRIDAVLDFVLIS 73 +++ +++ ++ Sbjct: 56 SQLEWLINKLMSR 68 >gi|118094603|ref|XP_422449.2| PREDICTED: similar to NOL1/NOP2/Sun domain family 4 protein [Gallus gallus] Length = 404 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 22/233 (9%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLR 280 +++ DA++ +PV + VLDLCAAPGGK L+ +GA A DVS R ++L Sbjct: 178 YYLMDAASLLPVLALNVQPDDFVLDLCAAPGGKMLALLQTGACGHLAANDVSISRTKRLY 237 Query: 281 CNLDRLHLY------AEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332 L+ + + + F VLVD PC++ + ++ Sbjct: 238 HVLNSYIPKEVRETVSVTSHDGRDWGELQGGTFHKVLVDVPCTTDRHSVMEEENNIFHKM 297 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVEL 390 T + Q +LL+ GI KP G VV+S CSL + +E VV++ + + + + Sbjct: 298 RTKERQMLPMLQLQLLMAGILAAKPEGEVVYSTCSLSQLQNEHVVERAIDIAETQFGITV 357 Query: 391 VPLNSAYWKSIDMAMALSPEGWI---RITPDMLEKIDGVSSGMDGFFAVALRR 440 + ++++++ G + P + + LRR Sbjct: 358 HVEDLSHFRTLFQDTFCFFSGCRLGELVLPHLTANFGP-------MYFCKLRR 403 >gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei subsp. sakei 23K] gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB [Lactobacillus sakei subsp. sakei 23K] Length = 142 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 18/141 (12%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---------ILVRAIV 53 + R + +L + + L+LE A + Q D + +V Sbjct: 5 NRHQIRQAAFQVLFTL-----NANQSLELEDAYQAVLTMDQFDAEEVTPVEVPAYLAFLV 59 Query: 54 NVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQ 110 + +DA L L L R +LR+ + ++ + ++ A+E Sbjct: 60 SGVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEALEL 119 Query: 111 AKRDKENRHFAKLVNSILRRV 131 AK+ + +N +L + Sbjct: 120 AKQF-TDDQAKGFINGVLSKF 139 >gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271] gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271] Length = 168 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 5/137 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ + R L + + ++ + + + ++ + Sbjct: 1 MKAHRRHIREKIVQALYTLDVRDT--DTATAGDWLITPEISKDPKAIRFFKQLLGAIVDN 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A+ILY D+ ++ A+E AK+ Sbjct: 59 REEIDQYISKHTFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAIEIAKKFNST 118 Query: 118 RHFAKLVNSILRRVSRE 134 +K VN IL V + Sbjct: 119 DKSSKFVNGILDAVYND 135 >gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium mcbrellneri ATCC 49030] gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium mcbrellneri ATCC 49030] Length = 134 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 7/112 (6%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 LL + + L+ L D + L + R IV+ + ++D ++ Sbjct: 12 LELLFEAEARNLPEAELIKLRENDEEYPL-----RPYSREIVDGVVTHRAQLDELISTYA 66 Query: 72 I-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFA 121 +L R + +LR+ + +ILY D V D +D AV AK + A Sbjct: 67 HGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDEAVTLAKEYSTDDSPA 118 >gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514] gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514] Length = 185 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 24/138 (17%) Query: 1 MKSGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLL------------------ 41 M AR + L L L+ + L Sbjct: 20 MGKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGATWGQKVELPAP 79 Query: 42 ---SQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-L 96 +I ++ L DA + + L R + +LR+++ ++L+ Sbjct: 80 TAEEAAVRIFADPLIRGALEHRDEADAQIKKYAENWDLHRIAAVDRNILRLAIFEMLHRE 139 Query: 97 DVADYAVVDLAVEQAKRD 114 D+ ++ AV+ AK+ Sbjct: 140 DIPPVVSINEAVDIAKKF 157 >gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum CIP 105476] gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP 105476] Length = 156 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + D AI+ Sbjct: 14 NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQYLDADFQWFLAIITGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ++ ++D +L L SL R L+ +LR ++ +++ DV VV+ V+ AK Sbjct: 74 VQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKDVPVAVVVNEYVDIAKA 133 Query: 114 DKENR 118 E Sbjct: 134 FFEGD 138 >gi|47201296|emb|CAF89287.1| unnamed protein product [Tetraodon nigroviridis] Length = 121 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 31/121 (25%) Query: 351 GISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPI--------------------PVEL 390 + +K GG++V+S C++ ++EE V L++ P Sbjct: 1 AVQLLKKGGVLVYSTCTVTLAENEEQVAWALQTFPCLSLQPQVRRPSQSGTSVIGPSPLC 60 Query: 391 VPLNSAYWKSIDMAMALSPEGWI---RITPDML------EKIDGVSSGMD--GFFAVALR 439 P LSPE R P++ + D GFF Sbjct: 61 FPQEPHIGAGGMQGAGLSPEQLRLLQRFRPELSWDQSRAAASLPHRADTDTIGFFIAKFL 120 Query: 440 R 440 + Sbjct: 121 K 121 >gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS455] gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP-BS293] gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP14-BS292] gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS397] gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS457] gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS458] gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein) [Streptococcus pneumoniae INV200] gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS455] gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP14-BS292] gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus pneumoniae SP-BS293] gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS458] gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS457] gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus pneumoniae BS397] Length = 140 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDR-EYTDVQLPAFLIDLVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D ++ A+E AK D ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAINEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|301782267|ref|XP_002926549.1| PREDICTED: putative methyltransferase NSUN7-like [Ailuropoda melanoleuca] gi|281341040|gb|EFB16624.1| hypothetical protein PANDA_016208 [Ailuropoda melanoleuca] Length = 722 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 70/470 (14%), Positives = 137/470 (29%), Gaps = 59/470 (12%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + LL D+ R + L+F ++ +L Sbjct: 58 IFQGIRFEKSPEQVLIKYGNEPLRSLLKSEDEAFQRSSYELAFSALKFQDILETILIDSS 117 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L+ V + + E +E + + L Sbjct: 118 IFPSTTIPEHLNSLIIVMLYD-FQDRKFQARLFSDNEEPIAEVQEVENLLNSFKTKLAAA 176 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIET--- 188 ++ I+PE + + L + + V ++ Sbjct: 177 LARCRIKHDALSIYHILPETVRN----QELRASTLPLYAWINTCKISPEDVHCSLKKKGY 232 Query: 189 --------WAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFG 238 K+ AV + + ++++ F + QD S S+ V Sbjct: 233 NKVKSVLHIDDKVYAVDQHCYDVLIFPSHLKNDLLNIDLFKDYKLIFQDKSRSLAVHSVR 292 Query: 239 TLNNLSVLDLCAAPGGKTAQLIV-------SGAKVTALDVSKRRLEKLRCNLDRLHLYAE 291 L N+ L G + + S+ + L+ ++ Sbjct: 293 ALLNMDDDILMVNTGSWYTVAHMSILTNNNTSKIFVCGVKSQAKDPDLKKLFTKMGCKNI 352 Query: 292 DIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTR-------D 333 +I+ + K + +L+ CS G H D + Sbjct: 353 EILHETFLNIESKDHRLQKVKVILLLPHCSGLGVSNPVEFILNEHEDTGLLKDFSQGGTS 412 Query: 334 TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP- 392 D + A Q + L + F K VV+ CS+ +++E VV+K L + +++ P Sbjct: 413 EDKLHILAQQQYEQLTHAMKFAKAQA-VVYCTCSVYPEENEAVVKKALELQDLGIKVQPY 471 Query: 393 --LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + LS + + R+ P S +G F L R Sbjct: 472 RLSPPVLPLCSLKEIHLSTDKFFRMEP---------SGITNGCFLSVLTR 512 >gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus pneumoniae CGSP14] gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus pneumoniae CGSP14] Length = 146 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 14 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDR-EYTDVQLPAFLIDLVSGVQAKKEE 71 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D ++ A+E AK D ++ Sbjct: 72 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAINEAIELAK-DFSDQKS 130 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 131 ARFINGLLSQF 141 >gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 149 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVT 56 S + R + L + L+ ++ +++ + ++ + +VN Sbjct: 7 NSRRDLRERAFQALFSMEMGG---DFLVASQFAYDYDKVVDEGNEALELPIFLLNLVNGV 63 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 +D + L SL R + + LLR+ + +I Y + D ++ +E AK+ Sbjct: 64 NDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIEVAKK 123 Query: 114 DKENRHFAKLVNSILRRV 131 + AK +N +L + Sbjct: 124 Y-SDETSAKFINGLLSQF 140 >gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus Blochmannia vafer str. BVAF] gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus Blochmannia vafer str. BVAF] Length = 140 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK + ARL + L + L+++E + + + D R + + Sbjct: 1 MKFITRRLARLCALQALYSWQFSK---NDLIEIENYIVSIQNIQNFDISYFRELYIGVIN 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + +D ++ L L Y +L +++ ++ D+ V++ A+E AK Sbjct: 58 CISDLDKLMIPYLFRDLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNEAIELAKIFGSE 117 Query: 118 RHFA 121 + + Sbjct: 118 KSYK 121 >gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC 27244] gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii SH205] gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC 27244] gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii SH205] Length = 149 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 5/121 (4%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + + + ++A + D ++ + +D +L V Sbjct: 19 AVQGIYEWQMSQNPVHEIEARTRVENAMHKV---DLNYYHELLTQVVAQHEALDELLIPV 75 Query: 71 LISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 L L LR+ ++ +L+V V+D A+E AK K +N +L Sbjct: 76 LDRELSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK-HFGGADSHKYINGVLD 134 Query: 130 R 130 R Sbjct: 135 R 135 >gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus pneumoniae JJA] gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae JJA] Length = 140 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + + +V+ Sbjct: 8 SRRQLRKCAFQALMS-LEFGTDVETACRFAYTHDREDT-AVQLPAFLIDLVSGVQAKKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK D ++ Sbjct: 66 LDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAVNEAIELAK-DFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus LMS2-1] gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus LMS2-1] Length = 139 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57 M + M +R H + + + ++ + + +D + A+V L Sbjct: 1 MTNKMESR----HAIREAAFRALFALATNPEADKNAVYAEVLPKDTEVPSYLTALVEGVL 56 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 +DA L L L R +LR+ + +I Y + + + A ++ A+ AKR Sbjct: 57 ANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRY 116 Query: 115 KENRHFAKLVNSILRRV 131 + AK VN IL Sbjct: 117 -SDEQSAKFVNGILANF 132 >gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7] gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7] Length = 166 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 3/139 (2%) Query: 9 LVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 + + + + L +++ D + +++ LR P + Sbjct: 28 EFALQGVYAWLLRGDAGLQEAGEIDAHIRDDEEFHDADATWFKTLLHGVLREAPALRERF 87 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 + L +L + ++ +++V ++ AVE AK F VN Sbjct: 88 MPHVDRPLEELSPIEHGILLIGSYELVHHIEVPYKVAINEAVELAKSFGGTDGFK-FVNG 146 Query: 127 ILRRVSREKIELLQRIAGI 145 +L +++ + + A Sbjct: 147 VLDKMAADVRSQEVQAAAR 165 >gi|302499366|ref|XP_003011679.1| NOL1/NOP2/sun domain protein, putative [Arthroderma benhamiae CBS 112371] gi|291175231|gb|EFE31039.1| NOL1/NOP2/sun domain protein, putative [Arthroderma benhamiae CBS 112371] Length = 550 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 91/336 (27%), Gaps = 90/336 (26%) Query: 187 ETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLF----GTLNN 242 T K + + I S + EG +QD ++ P L Sbjct: 196 ATADEKKYCLDEHIPDLMAISRDIDITSSSAYKEGRLILQDKASCFPAYLLLGDHPGQWK 255 Query: 243 LSVLDLCAAPGGKTAQL--------IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDII 294 ++D CAAPG KT L +V +LD S R + L+ + + + Sbjct: 256 GDLIDGCAAPGNKTTHLASLLSSTPEKQKNRVFSLDASHSRSKILQTMVKKAGASNIVTV 315 Query: 295 EMDAFDYCPKKLFDAVL------VDAPCSSTGTIRRHPD--------------------- 327 +D CS +G +R Sbjct: 316 LPGQDFLALDPADTRFQHVTALLLDPSCSGSGITKREDVPQLDLPKSKSELTLATTTSSK 375 Query: 328 -VLWTRDTDDI-----------------------VKSACFQRKLLLQGISFVKPGGIVVF 363 + + K A Q +++ F V + Sbjct: 376 GSKNRKRKRENPADSSSPGSSPTTEAKEDESERLAKLANLQSQIVEHAFGFPAAT-RVTY 434 Query: 364 SNCSLDKQDSEEVVQKVL-----RSSPIPVELVP--------------LNSAYWKSIDMA 404 S CS+ +++E+VV +VL ++ +EL L+ +S Sbjct: 435 STCSIHHEENEDVVARVLASSIAKNRGWRLELRSEQARGLRNWHHRGVLSGGSSESPPQL 494 Query: 405 MALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 E IR P G GFF R Sbjct: 495 SPEQLEACIRCWP-------AGDEGTGGFFVAIFVR 523 >gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 155 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVT 56 S + R + L + L+ ++ +++ + ++ + +VN Sbjct: 13 NSRRDLRERAFQALFSMEMGG---DFLVASQFAYDYDKVVDEGNEALELPIFLLNLVNGV 69 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 +D + L SL R + + LLR+ + +I Y + D ++ +E AK+ Sbjct: 70 NDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFNETPDRVALNEIIEVAKK 129 Query: 114 DKENRHFAKLVNSILRRV 131 + AK +N +L + Sbjct: 130 Y-SDETSAKFINGLLSQF 146 >gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334] gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334] Length = 139 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59 S R + L + + Y D + +V+ Sbjct: 8 SRRELRKCAFQALMS-LEFGTDVETACRFAYTHDR----EDADVQIPAFLLNLVSGVQAQ 62 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L S + R + LLR+ + +I D V+ A+E AK + + Sbjct: 63 KDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121 Query: 118 RHFAKLVNSILRRV 131 + A+ +N +L + Sbjct: 122 QKSARFINGLLSQF 135 >gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense MSR-1] Length = 160 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLL---DLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 ARL + L + ++ L L++ D LV +V Sbjct: 11 RSAARLAAVQALYSMEITGVTAEQALVEFRQRLDSEPRGKLAEPDMDLVALLVRGASFDG 70 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKEN 117 +DA + L + R + L+ +LR ++ + V+ Sbjct: 71 GDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVAITEYVDVTHAFYSG 130 Query: 118 RHFAKLVNSILRRV 131 LVN+++ R+ Sbjct: 131 PE-PGLVNAVMDRM 143 >gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae str. Houston-1] gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str. Houston-1] Length = 158 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 8/125 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + D AI+ Sbjct: 14 NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQYLDADFQWFLAIITGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ++ ++D +L+ L SL R L+ +LR + +++ DV V+ V+ AK Sbjct: 74 VKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIAVVMSEYVDIAKA 133 Query: 114 DKENR 118 E Sbjct: 134 FFEGD 138 >gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73] gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73] Length = 156 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 9/137 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + ++ + + D +I+ Sbjct: 14 NKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDGDQYLDADFQWFCSIIVGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ++ ++D +L L +L R +L+ +LR + +++ DV +++ V+ AK Sbjct: 74 VKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKDVPVAVIINEYVDIAKA 133 Query: 114 DKENRHFAKLVNSILRR 130 +LVN++L Sbjct: 134 FF-ESDEPRLVNAVLDN 149 >gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407] gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676] gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185] gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2] gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15] gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4] gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24] gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550] gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803] gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W] gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876] gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876] gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W] gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803] gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550] gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24] gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4] gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15] gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2] gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185] gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676] gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407] gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 120 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 12 SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + ++ + + ++V + ID + Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVENKEAIDEAIRQN 54 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L L R + +LRV+V ++ Y+ ++ ++ A+E AK + + +N +L Sbjct: 55 LKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113 Query: 129 RR 130 Sbjct: 114 SN 115 >gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis NRRL B-59395] Length = 149 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 6/135 (4%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 MK AR + LL K + T L+ +V Sbjct: 1 MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDSVGTMYDYTVRVVEGVT 60 Query: 58 RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 ++DAV++ L + L R + +LR++V ++LY DV V+D AVE AK Sbjct: 61 VDASQVDAVIESHLENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDEAVELAKE-L 119 Query: 116 ENRHFAKLVNSILRR 130 VN +L + Sbjct: 120 STDDSPSFVNGVLGK 134 >gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium vulgare Y25] gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium vulgare Y25] Length = 147 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 7/135 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----DQILVRAIVNVTLR 58 ARL + L + +++T + + D L R ++ + Sbjct: 2 RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGASIDGEELVEGDVTLFRTLMQDAVN 61 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 +ID + D L + R +L+ L R + A+ + + V+ ++ A Sbjct: 62 NQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEFMLKETPAKVVIVEFMDIASAFSA 121 Query: 117 NRHFAKLVNSILRRV 131 + K VN++L + Sbjct: 122 DPKEPKFVNAVLDHM 136 >gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528] gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528] Length = 158 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 23/150 (15%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR------------------ 44 + +R + LL + R +L D+ + + + Sbjct: 2 NRKKSRELIMKLLFEMSINREDFRSVLAN-LEDNLEKKIESKETDGAEEVYSENIDKLKN 60 Query: 45 -DQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADY 101 D V+ +V +D ++ L + +L R +LR+ + LY D+ + Sbjct: 61 VDMEYVKRVVKGIEENKDSLDKEIEKYLRNWTLNRLPKVDAAILRICTYEFLYEQDIPEK 120 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 ++ A+E AK+ + A +N +L + Sbjct: 121 VSINEAIELAKKYSSEKS-APFINGVLGNM 149 >gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 149 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-----LVRAIVNVT 56 S + R + L + L+ ++ +++ + ++ + +VN Sbjct: 7 NSRRDLRERAFQALFSMEMGG---DFLVASQFAYDYDKVVDEGNEALELPIFLLNLVNGV 63 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKR 113 +D + L SL R + + LLR+ + +I Y + D ++ +E AK+ Sbjct: 64 NDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIEVAKK 123 Query: 114 DKENRHFAKLVNSILRRV 131 + AK +N +L + Sbjct: 124 Y-SDETSAKFINGLLSQF 140 >gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2] gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2] Length = 198 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 9/127 (7%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + LL SL +L+ +Y S L +V L RI Sbjct: 9 RTLARSQALQLLFQAEALMCSLDEVLEGDYLLSQG-PLEP----YALELVRGCYAHLDRI 63 Query: 64 DAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENRHF 120 D+ L V + L R S + LLR+++ ++ D D V++ AVE AK Sbjct: 64 DSALCAVSQNWELSRMPGSDRNLLRLAIYEMRLADEPIEDAVVINEAVEIAKAY-GTDES 122 Query: 121 AKLVNSI 127 A VN + Sbjct: 123 AGFVNGV 129 >gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana str. Toulouse] gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str. Toulouse] Length = 156 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 8/125 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + D AI+ Sbjct: 14 NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNIDGNQYLDADFQWFLAIITGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ++ ++D +L L SL R L+ +LR + +++ DV V++ V+ AK Sbjct: 74 VKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQDVPIAVVMNEYVDIAKA 133 Query: 114 DKENR 118 E Sbjct: 134 FFEGD 138 >gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium jeikeium K411] gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411] Length = 202 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S AR + +L + I + + + + + IV L Sbjct: 22 SRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVATNLD 81 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D + L L R + +LRV+ ++ + DV V VE A ++ Sbjct: 82 ALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYSHDK 141 Query: 119 HFA 121 + Sbjct: 142 APS 144 >gi|297182177|gb|ADI18348.1| tRNA and rRNA cytosine-c5-methylases [uncultured actinobacterium HF4000_04C13] Length = 86 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 SG + R ++ +L + R +L S L +RD+ V +V T R Sbjct: 17 SGEDPRRLALEVLGRIERDGAYANLVLRTALDRS---NLDRRDRAFVTDLVYGTTRMRRA 73 Query: 63 IDAVLDFVLI 72 D ++D L Sbjct: 74 CDHLVDSFLH 83 >gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333] gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333] Length = 153 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 8/126 (6%) Query: 12 SHLLSCVMRK----RISLT-CLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 LL +K + + L A + IV RID + Sbjct: 12 LDLLYEADQKAVSGGAPASGDAVALLAERIATPHGEAPMREYTVEIVEGVAAHQARIDEL 71 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124 L+ SL R + +LR+ V ++L+ DV D VD AV A + V Sbjct: 72 LETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALA-AELSTDDSPTFV 130 Query: 125 NSILRR 130 N +L + Sbjct: 131 NGLLGQ 136 >gi|156098398|ref|XP_001615231.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148804105|gb|EDL45504.1| hypothetical protein, conserved [Plasmodium vivax] Length = 505 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 4/149 (2%) Query: 253 GGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLV 312 G A V + L K +RLHL + + +++F P+ F +L+ Sbjct: 285 GFFVANEFNRVRYDRLKQVLGKHLPKDLLTSNRLHLTNYNGLNVNSFLRFPR--FHKILL 342 Query: 313 DAPCSSTG--TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDK 370 D PCS+ ++ D+L I +A Q +LL + GI+V+S C+L Sbjct: 343 DVPCSTDEHLIKKKKKDLLNKWSDKVIKNNASVQFELLRNSFQLLHTNGILVYSTCALSH 402 Query: 371 QDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 ++++V++K L V++V + Sbjct: 403 HENDQVIEKFLTKYKKQVQVVDFVKEEVQ 431 >gi|294790502|ref|ZP_06755660.1| transcription antitermination factor NusB [Scardovia inopinata F0304] gi|294458399|gb|EFG26752.1| transcription antitermination factor NusB [Scardovia inopinata F0304] Length = 176 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 8/147 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR + + L K + LLD + + I+ ID Sbjct: 6 ARKRALNTLYEADEKGQEILPLLDERLAFPGAQTPLP---AYAQDIIRGVASHRRTIDRA 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRH---FA 121 ++ + R + + R++ +I+Y D V +D A+ AK + Sbjct: 63 INEHSTGWDVKRMHVLDRNIARIAAWEIVYNDEVLAKVAIDEALGLAKIYSDGEAPNFLH 122 Query: 122 KLVNSILRRVSREKIELLQRIAGISII 148 L+++I R + E + + + Sbjct: 123 GLLSAIERDAESIRTEEQEWQEYRASL 149 >gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis 315-B] gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis 315-B] gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 139 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 NAR+ + LL + + ++ + + F S+ +Q + ++++ + L + Sbjct: 3 RKNARVGAMQLLYSMELNKDFSQENIEKFFENYDF---SESEQSYINSVISELVNNLDSV 59 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 D VL L ++PR +++LRV++ + LY D+ ++ AVE AK+ Sbjct: 60 DKVLSDNLQGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAKKYSSEES 117 >gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium jeikeium ATCC 43734] gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB) [Corynebacterium jeikeium ATCC 43734] Length = 205 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 4/123 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S AR + +L + I + + + + + IV L Sbjct: 22 SRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSANQVKPVPEYTQQIVPGVATNLD 81 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D + L L R + +LRV+ ++ + DV V VE A ++ Sbjct: 82 ALDEAIALHLSSDWQLDRLPAVDRAVLRVAAWELKFNDDVPPQVAVVEGVELASEYSHDK 141 Query: 119 HFA 121 + Sbjct: 142 APS 144 >gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans DSM 13031] Length = 191 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 5/136 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + + ++ Sbjct: 28 MKTYRRQIREKILQALYTIEIRETDIDSAAGWLLTQEILDDANAM--KFFNLLLKSIKEN 85 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A+ILY D+ ++ A+E AK+ Sbjct: 86 REEIDRYIAKHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFTST 145 Query: 118 RHFAKLVNSILRRVSR 133 +K VN IL + Sbjct: 146 DKSSKFVNGILDAIFN 161 >gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 141 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 6/136 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR+ +L + + L+ + F S+ ++ + + + ++ L Sbjct: 2 SRKKARIGQMQVLYQMDITDDFSSDGLNTFLENFEF---SEEEKDYINSTIPEIIKNLEN 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID + L SL R +++LR+++ +ILY D+ + ++ AVE +K+ + Sbjct: 59 IDQTIQSHLEGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEISKQF-GSSES 117 Query: 121 AKLVNSILRRVSREKI 136 +K +N IL + R Sbjct: 118 SKFINGILGSIYRSMH 133 >gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273] gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272] gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29] gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28] gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3] gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3] gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28] gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29] gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272] gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273] Length = 120 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 10/122 (8%) Query: 12 SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + ++ + + ++V + IDA + Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVDNKEEIDAAIRQN 54 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L L R + +LRV+V ++ Y+ ++ ++ A+E AK + + +N +L Sbjct: 55 LKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113 Query: 129 RR 130 Sbjct: 114 SN 115 >gi|309800710|ref|ZP_07694848.1| NOL1/NOP2/sun family protein [Streptococcus infantis SK1302] gi|308115663|gb|EFO53201.1| NOL1/NOP2/sun family protein [Streptococcus infantis SK1302] Length = 229 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 19/95 (20%) Query: 354 FVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI 413 + GG +V+S C+ +++EE+VQ +L S + V + ID+ A Sbjct: 1 MLADGGRLVYSTCTWSPEENEEIVQWLLDSYDFELIPVQQINGMVPGIDLPEAA------ 54 Query: 414 RITPDMLEKIDGVSSGMDGFFAVALR-----RLIQ 443 R+ P + F L+ ++ + Sbjct: 55 RMYPHHFKGEGQ--------FVAHLQFRGENKVSK 81 >gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8] gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8] Length = 141 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 4/123 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R ++ +L + + E ++ + + + + + Sbjct: 1 MGTRRKSRELAMQMLFQGDLGKQKPEEV--EELFWASREDVDDETRGFADDLHRLATQRE 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +DA++ + L R + LLR +VA+++ Y +++ +E A+R Sbjct: 59 DEVDALIQKHAQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLEIARRYAAPE 118 Query: 119 HFA 121 Sbjct: 119 SIH 121 >gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC 700780] gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC 700780] Length = 140 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V Sbjct: 8 SRRELRKCAFQALMSLEY-GSDIETACRFAYTHDREDD-EVKLPSFLINLVTGVQAQKEE 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK ++ Sbjct: 66 LDKQITQHLKAGWTIDRLTLVEKNLLRLGVFEITSFDTPQLVAVNEAIELAKSF-SDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis PHE/MN1-00] gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis PHE/MN1-00] Length = 161 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 14/134 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAI----------VNVTL 57 R + +L + +I+ L + + L +R+ ++ + V Sbjct: 13 RTKAFQVLYSLHFTQINTIETLKEIFLNLP-NPLEERNTGIITELDTQISFSWQLVEGVW 71 Query: 58 RFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDK 115 R + R+D ++ + + R LLR++ ++ Y DV ++ A+E A Sbjct: 72 RNVTRLDKIISQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVSLNEALELAT-CF 130 Query: 116 ENRHFAKLVNSILR 129 + K +N IL Sbjct: 131 GDEKARKFINGILD 144 >gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 126 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLIS 73 L + + L +L ++ D ++ +IVN ++ +ID ++ + Sbjct: 2 ALYQLELTQPPLKEVLKFKWYDKKT---EPEERDFAVSIVNGVVKNQEQIDTLIKKYSKN 58 Query: 74 -SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 R + +LR+S+ +LY +V +D AVE K + Sbjct: 59 WDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESA 107 >gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745] gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745] Length = 133 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 8/134 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + ++ L+ L D + F DQ ++ +V Sbjct: 1 MSLNRHQIRESAFKIIFAKSANPDADLSELQDQVLEE--FHETEAPDQ-FLKDLVMGVSL 57 Query: 59 FLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 L I+ + L + R + + +L++ +I Y + D ++ A+E AK+ Sbjct: 58 NLEAINETISGELKKGWTVKRLESPDRVILQMGTYEIKYTETPDKVAINEALELAKKY-T 116 Query: 117 NRHFAKLVNSILRR 130 + K +N +L Sbjct: 117 DEDARKFINGVLSN 130 >gi|325068837|ref|ZP_08127510.1| NusB antitermination factor [Actinomyces oris K20] Length = 163 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVNVTL 57 + AR + +L ++ + + + R +S + R I+N Sbjct: 21 TARTKARRRAIEILFEADQRGMLSDEGAEELRSFAQLRAVSSANHTEAPAYTREILNGVC 80 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L +D + +L R + + RV+ +I+Y D V VD A+ ++ Sbjct: 81 DHLDDVDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSRMLS 140 Query: 116 ENRH 119 + Sbjct: 141 TDES 144 >gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus ATCC 23263] gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus ATCC 23263] Length = 158 Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Query: 8 RLVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R ++ + + + L + A +V+V + L ID Sbjct: 13 RELALRAVFQIEFHQDAQDLQKGIAAVIDSDAGFEHDHGSSGYAAYLVDVVVDHLAAIDE 72 Query: 66 VLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + L + R + + +LRV+ A++ YLD ++ AVE AKR + + Sbjct: 73 RIAQYLRKDWHMDRLPGAEKAILRVATAEMCYLDQPLEIAINEAVELAKRYC-DEDAPRY 131 Query: 124 VNSILRRVSRE 134 +N IL + Sbjct: 132 INGILNNLGHH 142 >gi|269467885|gb|EEZ79624.1| transcription termination factor [uncultured SUP05 cluster bacterium] Length = 142 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 13/121 (10%), Positives = 38/121 (31%), Gaps = 5/121 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 +R + + + ++ ++ + +S + + L+ Sbjct: 5 TPKQRSRERVVQAVYQYLVSGGEV-LQIEQQFLNQKEGKIS---KAFFSNLFINILKNRI 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 +D ++ + +L + V ++ +V V++ A+E AK F Sbjct: 61 ELDELIAPTISRETDELGSVEHAVLYLGVYELQNSIEVPYKVVINEALEIAKLYGAEGAF 120 Query: 121 A 121 Sbjct: 121 K 121 >gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC 700779] gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC 700779] Length = 140 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRELRKCAFQALMSLEY-GSDIETACRFAYTHDREDD-EVKLPSFLIDLVSGVQAQKEE 65 Query: 63 IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L S + R + LLR+ V +I D V+ A+E AK ++ Sbjct: 66 LDKQITQHLKSGWTIERLTLVEKNLLRLGVFEITSFDTPQLVAVNEAIELAKSF-SDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|328716088|ref|XP_003245829.1| PREDICTED: putative methyltransferase NSUN4-like [Acyrthosiphon pisum] Length = 478 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 89/235 (37%), Gaps = 24/235 (10%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVS--GAKVTALDVSKRRLEKLR 280 +++ D + +PV VLD+C+APGGK + + + D+ + R++K+ Sbjct: 251 YYLMDGGSILPVLALDLQLGDRVLDMCSAPGGKALATLQTLLPESLVCNDIQESRIKKIH 310 Query: 281 CNLDRLHL------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTR 332 + +M+A +++ +LVD PC++ ++ Sbjct: 311 NVMSEYISDYQSWGSRLMFTQMNARSLNEPDVYNKILVDVPCTNDRHSLENNENNMFKPT 370 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS------SPI 386 + ++ Q +L + + GG VV+S CSL ++ VV+ L+ I Sbjct: 371 RAKERLQLPEIQADILKSALMNIAVGGTVVYSTCSLSPIQNDGVVKMALKKIWEETNHQI 430 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 V+ + KS+ G + + P + + + L R+ Sbjct: 431 IVKDLTKQFRPLKSLYSFSKGLKFGQM-VMPFLPLNYGPL-------YLCKLVRV 477 >gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna ACS-171-V-Col3] gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna ACS-171-V-Col3] Length = 137 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 5/121 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S +R + L+ + ++ ++ +++ D + IV + + Sbjct: 2 SRRQSRKSAMQLIYEMNMNEDYDKQRIEEFCK---YQNINKNDIEFFKEIVLNFIEHIDD 58 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 I +++ +L R +L+V V +ILY++ D ++ AVE AK + + Sbjct: 59 IVNIIENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELAKEYSTEKSY 118 Query: 121 A 121 + Sbjct: 119 S 119 >gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B str. Eklund 17B] gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B str. Eklund 17B] Length = 133 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R + LL + + L+ + + + D ++ I+ Sbjct: 1 MNRKL-SREKAMELLFGMTLNTDNCEETLENFIDNYE-SDIKELDITYIKRILIGVENNK 58 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L + R +LR++V ++L+ ++ + ++ A+E K+ + + Sbjct: 59 DNIDESISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEK 118 Query: 119 HFAKLVNSILRR 130 + VN +L Sbjct: 119 SVS-FVNGVLDN 129 >gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3 str. Alaska E43] gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3 str. Alaska E43] Length = 133 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 5/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R + LL + + L + + + D ++ I+ Sbjct: 1 MNRKL-SREKAMELLFGMTLNTDNCEETLGNFIDNYE-SDIKELDITYIKRILIGVENNK 58 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L + R +LR++V ++L+ ++ + ++ A+E K+ + + Sbjct: 59 DNIDEAISKNLCNWKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEITKKYSDEK 118 Query: 119 HFAKLVNSILRR 130 + +N +L Sbjct: 119 SVS-FINGVLDN 129 >gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC 12261] gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC 12261] Length = 141 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + + Y + + +V+ Sbjct: 8 SRRELRKCAFQALMS-LEFGTDMETACHFAYTHDREDE-DVQIPAFLLNLVSGVQAQKDE 65 Query: 63 IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ L S + R + LLR+ + +I D V+ A+E AK + ++ Sbjct: 66 LDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1] gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1] Length = 145 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 59/142 (41%), Gaps = 5/142 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ + + + + ++V T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVIGTFNN 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID+++ + L SL R +LR+ V + + + + V+D A+ AK+ Sbjct: 61 LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREKIEL 138 +++ K +N IL + + Sbjct: 120 SKNSYKFINGILDALLKNMESC 141 >gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus TCF52B] gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus TCF52B] Length = 142 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 6/131 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 K R L ++ L L ++ + + + + + Sbjct: 3 KRRHKMRESVFKALFQWDFQK---DEDLTEIAKQHVSLLEDEKLREQAYSYIEGIKKTIE 59 Query: 62 RIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D ++ L + +L R + + +LR+ ++LY DV +D +E K + Sbjct: 60 SLDEIISKYLQNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMIELGKTY-GTEN 118 Query: 120 FAKLVNSILRR 130 K VN +L R Sbjct: 119 SGKFVNGVLDR 129 >gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 165 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 16/137 (11%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDS-----AFRLLSQRDQ--------ILVRAIVN 54 R ++ +L + + L Y S + D+ +++ Sbjct: 14 RALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEKADRQAPATAPQGYAWEVIH 73 Query: 55 VTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112 + +D + + + R LLR++V ++L+ DV ++ A+E +K Sbjct: 74 GVWKTQAELDEAVSGFSQNWRVERMGRVELTLLRIAVYEMLFRDDVPAKVAMNEAIELSK 133 Query: 113 RDKENRHFAKLVNSILR 129 + + + +N IL Sbjct: 134 QF-GDDNSRGFINGILD 149 >gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi] gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi] Length = 142 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 5/138 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ + + + + ++VN T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFSIEDKGLDIENESIKSFYSSLVNGTFNNLEYI 61 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + SL R +LR+ V + + + + ++D A+ AK+ +++ Sbjct: 62 DSLIKDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL + + Sbjct: 121 DKFINGILDALLKNMENC 138 >gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr] gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr] Length = 145 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 58/142 (40%), Gaps = 5/142 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ + + + + ++VN T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFTIEDKGLDIENESIKSFYSSLVNGTFNN 60 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID ++ + SL R +LR+ V + + + + ++D A+ AK+ Sbjct: 61 LEYIDNLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREKIEL 138 +++ K +N IL + + Sbjct: 120 SKNSDKFINGILDALLKNMENC 141 >gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7] gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium carboxidivorans P7] gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7] gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium carboxidivorans P7] Length = 155 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 22/141 (15%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRL--------------------LS 42 + +R + LL + + ++ + L Sbjct: 2 NRRKSRELVMKLLFQMTINKEDFKDVVANLKENIELDKSELQITGIEGKNEIDPENIDLK 61 Query: 43 QRDQILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VAD 100 D V ++ ID+ ++ L L R +LRV + LY D + Sbjct: 62 DIDMEYVIRVLKGVQENKESIDSAIEKHLINWKLNRLSKLDVAILRVCTYEFLYEDNIPK 121 Query: 101 YAVVDLAVEQAKRDKENRHFA 121 ++ A+E AKR ++ A Sbjct: 122 NVSINEAIELAKRYSGDKSAA 142 >gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26] gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342] gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1] gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293] gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293] gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1] gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342] gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26] gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 120 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 12 SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + ++ + + ++V + ID + Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVENKEVIDEAIRQN 54 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L L R + +LRV+V ++ Y+ ++ ++ A+E AK + + +N +L Sbjct: 55 LKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113 Query: 129 RR 130 Sbjct: 114 SN 115 >gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1] gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1] Length = 151 Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 9/122 (7%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLPRIDAVLDFV 70 + L LLD + + + +V IDA + Sbjct: 23 YQQEMEGTPLAALLDEFHQHRLGATIEDVEYAAAEVAFFDDLVKGVDARRAEIDAAIGAR 82 Query: 71 LISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L S L R ++Q+LRV +++ DV V+ V+ A ++ VN + Sbjct: 83 LASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFY-DKKEKGFVNGV 141 Query: 128 LR 129 L Sbjct: 142 LD 143 >gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis SK564] gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis SK564] Length = 141 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59 S R + L + ++ + D + +V+ Sbjct: 8 SRRELRKCAFQALLSLEFGTD-----METACRFAYTHDREDADVQIPAFLLNLVSGIQAQ 62 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L S + R + LLR+ + +I D V+ A+E AK + + Sbjct: 63 KEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121 Query: 118 RHFAKLVNSILRRV 131 + A+ +N +L + Sbjct: 122 QKSARFINGLLSQF 135 >gi|307206260|gb|EFN84325.1| Putative methyltransferase NSUN4 [Harpegnathos saltator] Length = 505 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 23/234 (9%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIV--SGAKVTALDVSKRRLEKLR 280 +++ D ++ +PV SVLD+CAAPGGKT ++ + A D R++++ Sbjct: 277 YYLLDGTSILPVLALDLQPGDSVLDMCAAPGGKTLTILQTLMPRLLVANDAQLSRMKRIH 336 Query: 281 CNLDRLHL------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTG--TIRRHPDVLWTR 332 +++ + + DA K +++ +LVD PC++ ++ + Sbjct: 337 NVINQYVNGIGQWQDRLYVTQHDAKTISDKDVYNKILVDVPCTTDRHVLHSDENNIFKST 396 Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 + +K Q +L + + GG VV+S CSL ++ VV L+ + + Sbjct: 397 RLQERLKIPELQAGILTNALKIIPVGGTVVYSTCSLSPIQNDGVVGLALKQAWEETNSIM 456 Query: 393 LNSAYWKSIDMAMALSPEG--WIR----ITPDMLEKIDGVSSGMDGFFAVALRR 440 + K++ L G +R + P + + + R Sbjct: 457 IVKDMGKALRPLNCLYKFGNFGLRYGHIVIPTLKNNWGP-------MYFCKIVR 503 >gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum AMB-1] gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum AMB-1] Length = 156 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 7/135 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR---LLSQRDQILVRAIVNVTLR 58 ARL + +L + L A ++ D L+ +V Sbjct: 9 AKRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAEPKGRMADPDNSLLNQVVRGVSA 68 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115 L ID + L ++ R + L+ ++R ++ + V+ A Sbjct: 69 QLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 ENRHFAKLVNSILRR 130 LVN +L Sbjct: 129 SGPE-PGLVNGVLDH 142 >gi|209879317|ref|XP_002141099.1| hypothetical protein [Cryptosporidium muris RN66] gi|209556705|gb|EEA06750.1| hypothetical protein, conserved [Cryptosporidium muris RN66] Length = 507 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 8/155 (5%) Query: 290 AEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLL 349 K +++D CS +G + ++K FQ+K+LL Sbjct: 354 NIAWYNYLWCVCRAKF----IILDPSCSGSGLPLHKDIIQKDIS-HRLLKLTTFQKKILL 408 Query: 350 QGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP-LNSAYWKSIDMAMALS 408 I+ + +S CS+ K+++E+VV L +S +LV ++ K +D+ Sbjct: 409 HAINNFINVNTICYSTCSIYKEENEDVVIYALNNSKDSFKLVNGIDWWEKKDLDLKCENM 468 Query: 409 PEGWIRITPD--MLEKIDGVSSGMDGFFAVALRRL 441 + ++D GFF L R Sbjct: 469 QDICDLFLQCKIYCIRMDPKIHKCRGFFLAKLLRK 503 >gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102] gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102] Length = 142 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 5/123 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ + + + + + S + + L + Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQSSNMDEE---LFNKLFFGAQTH 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L V+ ++ + + +++ A+E K Sbjct: 58 AEEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFA 121 Sbjct: 118 GHK 120 >gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136] Length = 145 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 11/143 (7%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR--D-QILVRAIVNVTLRFLPRID 64 R + L +AF L D + ++V +ID Sbjct: 10 RQAAMQFLFAHDVHGKVEDT------DRAAFWTLHSATQDIRAHAESLVTGIKTHQVQID 63 Query: 65 AVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + L + R + +LR++V ++L+ +V V++ AVE +K + + A Sbjct: 64 DCIAATLENFRFERLGVVDRNILRLAVYEMLHTEVPVPVVINEAVEISKVFGDTQTRA-F 122 Query: 124 VNSILRRVSREKIELLQRIAGIS 146 VN +L ++++ A Sbjct: 123 VNGVLDKIAKRIPGRQAPSAPQP 145 >gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira hyodysenteriae WA1] gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira hyodysenteriae WA1] Length = 181 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + AR+ + L ++ + + + R +V T+ L R Sbjct: 48 ARRQARIYAVMSLYSYEINDR--KETINEILSFDYDKKIPENIFEFTRTLVEGTINNLER 105 Query: 63 IDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 ID +++ + + R +Y + ++R+S+ +++L D+ V+D AVE +K ++ Sbjct: 106 IDNLIEKYSNNWDIKRIQYVDKSIIRMSIYSLIFLKDIPKSVVIDEAVEISK-IFSDKDS 164 Query: 121 AKLVNSILR 129 K VN IL Sbjct: 165 YKFVNGILD 173 >gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327] gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327] Length = 164 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 5/137 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + + ++ + Sbjct: 1 MKTYRRQLREKIIQALYTLELRDVDTDSATNWLLTKEMAD--DPNAMKFFNHLMKSIIDH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A+ILY D+ ++ A+E AK+ Sbjct: 59 REEIDRHIAKHTFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFNST 118 Query: 118 RHFAKLVNSILRRVSRE 134 +K VN IL + + Sbjct: 119 EKSSKFVNGILDAIFND 135 >gi|156083717|ref|XP_001609342.1| hypothetical protein [Babesia bovis T2Bo] gi|154796593|gb|EDO05774.1| conserved hypothetical protein [Babesia bovis] Length = 445 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 69/411 (16%), Positives = 125/411 (30%), Gaps = 57/411 (13%) Query: 84 QLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIA 143 LL + V ++ Y + + + + ++ K+ + Sbjct: 39 WLLHIGVDELKYAQTLYQVEHGQKKRYYRYTSDRKSASSNTPLSDTTLTDGKVNKDGCLE 98 Query: 144 GISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGI 203 S + +E + + IS + ++ N V Sbjct: 99 QESTHTDDVEEHI--DRRFDNGGKISQCNQNSPKGVVSNDCSAFHVTKPDNIVSWLRDVE 156 Query: 204 RLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTA------ 257 + G V DA +L + +LD+C APGGK Sbjct: 157 LYECYSSIPEGTIGLDAASAAVVDA--LRLGELMHASSTRWILDMCCAPGGKLLGTVSAL 214 Query: 258 ---QLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKK--------- 305 + K+ LD KRRL+ L + + + + Sbjct: 215 RNLNNGETKWKIIGLDTIKRRLDVCASFLKKESVPNTVSVHLQQCRGQDFVEFDGESMIG 274 Query: 306 LFDAVLVDAPCSSTG---------TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 FD +L+DA C+ G + + QR+LL+ I ++ Sbjct: 275 RFDRILIDAECTHEGSLRSVLRTLKYWGADSLESRFTLEHAENIIANQRELLIHAIKLLR 334 Query: 357 PGGIVVFSNCSLDKQDSE----EVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPE 410 PGG++++S CSL ++ +E VV + L+ +P + D A+S E Sbjct: 335 PGGMIIYSTCSLHEEQNEILVANVVNQFADLKFRQLPTKYCEHCLPCSNRKDPWPAVSTE 394 Query: 411 GWI------RITPDM--------------LEKIDGVSSGMDGFFAVALRRL 441 + PD + D + DG F VA+ +L Sbjct: 395 LCLLKCSRESYLPDRSSNDHLCSNMDSPVCVRFDPLGPDTDGIFMVAITKL 445 >gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus JW/NM-WN-LF] Length = 139 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 4/132 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR S L+ + + + + A L+ + + +V+ T L Sbjct: 1 MSRRT-AREASMKLVFQMAFNDDHVDEVGAEDILAQAKEELNYNNYQYIETVVSRTESNL 59 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 +ID ++ + + R +LR+++++IL + D+ ++ AVE AK+ ++ Sbjct: 60 QKIDEYIEKFSENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELAKKFSTDK 119 Query: 119 HFAKLVNSILRR 130 + +N IL + Sbjct: 120 -ASGYINGILDQ 130 >gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 151 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 7/151 (4%) Query: 1 MKS--GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M AR L + + ++E A + D R ++ Sbjct: 1 MNPSARRRARECVVQALYAWQVSQ---NDIAEVELSFLADQETQGADIAYFRHVLLGVAS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKEN 117 + +D ++ L + +LR+++ ++ DV ++ A+E K Sbjct: 58 DVEALDTLMTPYLSRQFQELGQIEKAILRLAMFELNKRDDVPYKVTINEAIELGKTF-GA 116 Query: 118 RHFAKLVNSILRRVSREKIELLQRIAGISII 148 K +N +L + + + +Q + Sbjct: 117 DDSHKFINGVLDKAAPIIRKRMQIRSQNGPY 147 >gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii DSM 44385] gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii DSM 44385] Length = 192 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%) Query: 3 SGMNARLVSSHLLSCVMRKRI---SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 S AR + +L + + DS +L D IV+ Sbjct: 48 SRYKARRRAVDILFEAEFRDQDPVYVVEQRRELSQDSESGVLPVSD--YTATIVSGVAEN 105 Query: 60 LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 L ID+ + L L R + ++RVS ++L+ +V V +E A + Sbjct: 106 LDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWELLHNEEVPPKVAVSEGIELA-SEYS 164 Query: 117 NRHFAKLVNSILRR 130 VN++L Sbjct: 165 TDVAPAYVNAVLDD 178 >gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 368 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 40/115 (34%), Gaps = 4/115 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR +L ++ + + + Q +++ Sbjct: 1 MATRKQAREAIIQILYAKELGN---DKAIEQAEAFLNAQKIRNKQQDFALNLLHGICNEE 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 +I +++ L L R + ++++ V ++L + +++ A+E K Sbjct: 58 RKIADIINVFLKSWDLSRLGVIEKNIIKLGVYELLQTNTQKAVIINEAIELTKSF 112 >gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis SK321] gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis SK321] Length = 139 Score = 71.1 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59 S R + L + + Y D + +V+ Sbjct: 8 SRRELRKCAFQALMS-LEFGTDMETACHFAYTHDR----EDADVQIPAFLLNLVSGVQAQ 62 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L S + R + LLR+ + +I D V+ A+E AK + + Sbjct: 63 KDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121 Query: 118 RHFAKLVNSILRRV 131 + A+ +N +L + Sbjct: 122 QKSARFINGLLSQF 135 >gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei ACS-146-V-Sch2b] Length = 132 Score = 71.1 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 6/131 (4%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR+ + L + T LDL + F+ + D ++ V L L +D Sbjct: 6 ARIGAMQALFAMDVNDDFSTDKLDLFMENHEFQG-DEVD--YIKRTVPDILDKLDLVDET 62 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L ++ R +Q+LR++V + LY D+ + ++ AVE A+ + K + Sbjct: 63 IEKNLKGWTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEAVEIARLYSSDE-APKFI 121 Query: 125 NSILRRVSREK 135 N IL + R Sbjct: 122 NGILGTIYRSF 132 >gi|307704282|ref|ZP_07641201.1| transcription antitermination factor NusB [Streptococcus mitis SK597] gi|307622193|gb|EFO01211.1| transcription antitermination factor NusB [Streptococcus mitis SK597] Length = 141 Score = 71.1 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 11/134 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59 S R + L + + Y D + +V+ Sbjct: 8 SRRELRKCAFQALMS-LEFGTDMETACHFAYTHDR----EDADVQIPAFLLNLVSGVQAQ 62 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L S + R + LLR+ + +I D V+ A+E AK + + Sbjct: 63 KDELDKQINQHLKSGWIVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121 Query: 118 RHFAKLVNSILRRV 131 + A+ +N +L + Sbjct: 122 QKSARFINGLLSQF 135 >gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926] gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926] Length = 132 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 3/129 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR LL + T +L+ F+ LS+ Q + N Sbjct: 2 SRKTAREEFFKLLFEAELNEVDATEVLEDFISRDDFK-LSKAGQEFLERYANGVTENKAE 60 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 I +D + +L R + LL+ + ++L DV V++ VE AK+ Sbjct: 61 IQRTIDENMTGWTLDRIGNVERTLLKFATYELLKEDVGYEIVINEIVELAKKY-GEEKSH 119 Query: 122 KLVNSILRR 130 + +N +L + Sbjct: 120 EFINGVLAK 128 >gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens NRL30031/H210] gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens NRL30031/H210] Length = 142 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 5/123 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ + + + + + S + D+ L + Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIHELSQTSNM---DEELFNKLFFGAQTH 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L V+ ++ + + +++ A+E K Sbjct: 58 AAEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFA 121 Sbjct: 118 GHK 120 >gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM 11002] Length = 143 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 15/145 (10%) Query: 1 MK------SGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53 MK AR V+ LL + K+ L+ + + + VRA+V Sbjct: 1 MKVGRGHYKKHRAREVALQLLYSMDVTKKHDAEKALNDFSFEDEIDVETG-----VRALV 55 Query: 54 NVTLRFLPRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111 + L ID +++ V+ R + +R++V + L V + AVE Sbjct: 56 LGVMDHLGEIDNLINVNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELV 115 Query: 112 KRDKENRHFAKLVNSILRRVSREKI 136 K + VN L R+ R Sbjct: 116 K-VFGTDESGRFVNGALARIVRAMP 139 >gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi 156a] gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi 72a] gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi 64b] gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi 118a] gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi 156a] gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi 72a] gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi 64b] gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi 118a] Length = 145 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 60/142 (42%), Gaps = 5/142 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ D + ++ + ++V T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNN 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID+++ + L SL R +LR+ V + + + + ++D A+ AK+ Sbjct: 61 LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREKIEL 138 +++ K +N IL + + Sbjct: 120 SKNSYKFINGILDALLKNMESC 141 >gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3] gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3] Length = 135 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105 +V + ID + +L R + +LR++V ++L+ DV D +D Sbjct: 24 YAVELVEGVVERRGEIDERIARYAEGWTLERMPPVDRNILRIAVLELLWRPDVPDRVAID 83 Query: 106 LAVEQAKRDKENRHFA 121 AVE AK +R A Sbjct: 84 EAVELAKNLSTHRSPA 99 >gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM 519] gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii] Length = 133 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R + L + ++ ++ L ++ + + L Sbjct: 1 MK-RKELREAAVKLFYEMDIQKTFEHKFYKNFLAENELVALKDN---YLKEVFDNFLLNR 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID ++ + R +LRV++ +ILYL D+ D ++ A++ AK+ + Sbjct: 57 DNIDDIIQKSSTSWDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDLAKKY-GDE 115 Query: 119 HFAKLVNSILRR 130 + K VN +L + Sbjct: 116 NSYKFVNGLLGK 127 >gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5] gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5] Length = 315 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 12/137 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55 AR + L + L + +A ++ R + ++ Sbjct: 15 KARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMRD 74 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114 + +DA++ L + + +L V ++ L++ V+D A++ Sbjct: 75 IPEQIDALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKL-NNH 133 Query: 115 KENRHFAKLVNSILRRV 131 KL+N++L R+ Sbjct: 134 FGATDAHKLINAVLDRM 150 >gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6] gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6] Length = 139 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRF 59 S R + L + ++ + D + +V+ Sbjct: 8 SRRELRKCAFQALMSLE-----FDTDVETACHFAYTHDREDADVQIPAFLLNLVSGVQTQ 62 Query: 60 LPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKEN 117 +D ++ L ++ R + LLR+ + +I D V+ A+E AK + + Sbjct: 63 KDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFEITSFDTPQLVAVNEAIELAK-NFSD 121 Query: 118 RHFAKLVNSILRRV 131 + A+ +N +L + Sbjct: 122 QKSARFINGLLSQF 135 >gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis SK1302] gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis SK1302] Length = 140 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S R + L + L Y + + +V+ Sbjct: 8 SRRELRKCAFQALMSLEY-GSDLETACRFAYTHDREDT-DVQLPNFLVELVSGVQAKKDD 65 Query: 63 IDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 +D + L ++ R + LLR+ V +I D V+ A+E AK ++ Sbjct: 66 LDKQITQHLKTGWTINRLTLVEKNLLRLGVFEITSFDTPQLVAVNEAIELAKSF-SDQKS 124 Query: 121 AKLVNSILRRV 131 A+ +N +L + Sbjct: 125 ARFINGLLSQF 135 >gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13] Length = 138 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 9/118 (7%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 M + R + L+ + + + L ++ DQ VR +V TL Sbjct: 1 MSSMTRREVRDCAFKLIFEKLLRDDPIEEL---YAIADEVDEITVNDQ--VRELVEGTLD 55 Query: 59 FLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 +D ++ L R +LR+++ +ILY + A ++ AV+ ++ Sbjct: 56 KTEELDRIISEYSSKRGLSRIAKINIAVLRIALYEILYDEKTPMNAAINEAVQLSQTY 113 >gi|259479158|dbj|BAI40114.1| NOL1/NOP2/Sun domain family 2 protein [Brachionus plicatilis] Length = 78 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAM 405 ++ + + +KPGG++V+S CSL+ ++E VV +L S +E+V + Sbjct: 2 RIAKRAVELLKPGGLMVYSTCSLNPVENESVVHNLLESFTDQIEIVDARDXLP-GLKTVN 60 Query: 406 ALSPEGWIR 414 L ++R Sbjct: 61 GLFKWQFMR 69 >gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava NJ9703] gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava NJ9703] Length = 142 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 35/123 (28%), Gaps = 5/123 (4%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ + + + + S + D+ L + Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIRELSQAPNM---DEELFNKLFFGAQTH 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L V+ ++ + + +++ A+E K Sbjct: 58 AEEYMEKISPLLDRDEKDLSPIERAVLLVACHELSTMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFA 121 Sbjct: 118 GHK 120 >gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952] gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952] Length = 150 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQILVRA----I 52 M + R ++ L + + + + LL + ++ V + Sbjct: 1 MSKELSRHDIREMAVQSLFPLDFSTEFSKQDAIAHAIEVNQYDLLDEEEENFVPDYLDWL 60 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVE 109 V+ +D ++ L + R +LR+++ ++ + DV + V++ A+E Sbjct: 61 VSGVCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNEAIE 120 Query: 110 QAKRDKENRHFA 121 K +++ Sbjct: 121 LTKTFSDDQSRK 132 >gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi CA-11.2a] gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi CA-11.2a] Length = 145 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 60/142 (42%), Gaps = 5/142 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ D + ++ + ++V T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNN 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID+++ + L SL R +LR+ V + + + + ++D A+ AK+ Sbjct: 61 LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREKIEL 138 +++ K +N IL + + Sbjct: 120 SKNSYKFINGILDALLKNMESC 141 >gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4] gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4] Length = 146 Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 6/125 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCL----LDLEYGDSAFRLLSQRDQILVRAIVNVT 56 M + +R ++ +L + S + + ++ + Q + V Sbjct: 1 MGTRRKSRELAMQMLFQADLGKQSSEDVQKSFWNAREDEAGKATIDADTQGFAEDLFRVA 60 Query: 57 LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114 + ID +L+ + + R + LLR++VA+++ Y +++ A+E +R Sbjct: 61 MVKQEEIDTLLEEHAQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALEIGRRY 120 Query: 115 KENRH 119 Sbjct: 121 AAPES 125 >gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi WI91-23] gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi WI91-23] Length = 145 Score = 70.3 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ D + ++ + ++V T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNN 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID+++ + L SL R +LR+ V + + + + ++D A+ AK+ Sbjct: 61 LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREK 135 +++ K +N IL + + Sbjct: 120 SKNSYKFINGILDALLKNM 138 >gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1] gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1] Length = 171 Score = 70.3 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 5/137 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + + ++ Sbjct: 1 MKTYRRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILA--DPNAMKFFNMLLKNIKEH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + ID + + R + ++R+++ +ILY D+ ++ A+E AK+ Sbjct: 59 MEEIDRYIVKHTFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAIEIAKKFNST 118 Query: 118 RHFAKLVNSILRRVSRE 134 +K VN IL + + Sbjct: 119 DKSSKFVNGILDAIFND 135 >gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 142 Score = 70.3 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK AR ++ +L + + L + E D+I IV ++ Sbjct: 1 MKSKRRKARELAIQVLYSWQISKKIV--LFETEKYVIEQNKKYSLDKIYFHKIVTGVIKN 58 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 + ID ++ + R Y Q +LR++ +I+ LD+ +++ +E AK N+ Sbjct: 59 IFYIDKIIKKNISKKKNRLDYIEQAILRLASYEIIKRLDIPYKVIINEGIELAKIYGSNK 118 Query: 119 HFA 121 Sbjct: 119 SHK 121 >gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04] gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04] Length = 142 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 57/138 (41%), Gaps = 5/138 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ + + + + ++VN T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFTIEDKGLDIENESIKSFYSSLVNGTFNNLEYI 61 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D ++ + SL R +LR+ V + + + + ++D A+ AK+ +++ Sbjct: 62 DNLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL + + Sbjct: 121 DKFINGILDALLKNMENC 138 >gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM 45221] gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM 45221] Length = 153 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 7/134 (5%) Query: 8 RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID-A 65 R + L + L + + + + S+ +++ L + +ID Sbjct: 18 RTCAVQFLYQWEMNKPDELNDAIAVFFE---GQGFSRNYYAFSEELIHGALDNIAKIDDE 74 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ + R +LR+++ ++LY D+ ++ A++ +K N + + Sbjct: 75 IMSHANNWTFDRIAKIDLSILRLAIYELLYRTDIPPIVSINEAIDLSK-VFSNPDSKRFI 133 Query: 125 NSILRRVSREKIEL 138 N IL ++ + Sbjct: 134 NGILDKMKDKINRP 147 >gi|322817935|gb|EFZ25505.1| hypothetical protein TCSYLVIO_8335 [Trypanosoma cruzi] Length = 561 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 46/177 (25%) Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-- 360 + F +L+D PC+ G R I SA +QRKL + ++ G Sbjct: 375 WECEFHGILLDPPCTGMGL--RPKLNAHLITPQGIRDSADYQRKLFDSCVKMLRRTGTSV 432 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPV-------------------------------- 388 +V+S C++ ++E V L + P Sbjct: 433 LVYSTCTITLDENEANVLWALNTYPFLRLARAKTNDKKRLCLLGSTNFANGRRFLLEEEI 492 Query: 389 -------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 EL+ ++A + D +P +R P + G+ GFF Sbjct: 493 QKAQRRNELLESHTASTERGDTDEPENPLMILRFMPGL--STMPEEDGV-GFFLAVF 546 >gi|71664344|ref|XP_819153.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70884443|gb|EAN97302.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 561 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 46/177 (25%) Query: 303 PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGI-- 360 + F +L+D PC+ G R I SA +QRKL + ++ G Sbjct: 375 WECEFHGILLDPPCTGMGL--RPKLNAHLITPQGIRDSADYQRKLFDSCVKMLRRTGTSV 432 Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPV-------------------------------- 388 +V+S C++ ++E V L + P Sbjct: 433 LVYSTCTITLDENEANVLWALNTYPFLRLARAKTNDKKRLCLLGSTNFANGRRFLLEEEI 492 Query: 389 -------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 EL+ ++A + D +P +R P + G+ GFF Sbjct: 493 QKAQRRNELLESHTASTERGDTDEPENPLMILRFMPGL--STMPEEDGV-GFFLAVF 546 >gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis PC909] gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1] gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis PC909] gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1] Length = 159 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 24/133 (18%) Query: 8 RLVSSHLLSCVMRKRISLTCLLD------LEYGDSAFRLLSQR---------------DQ 46 R + L + +++ ++ + A L+++ D Sbjct: 7 RQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTFKLD- 65 Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVV 104 +VN L ++D +++ L SL R + +LR++ ++ Y D A V+ Sbjct: 66 EFYFELVNGVLTHKEQLDQIINDNLRGWSLSRLNKVDKAILRLATYEMKYCQDTAKKIVI 125 Query: 105 DLAVEQAKRDKEN 117 D A+E K + Sbjct: 126 DEALELTKEFSDT 138 >gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii as4aup] gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii as4aup] Length = 156 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----QRDQILVRAIVNVT 56 ARL + L + + + + + D AI+ Sbjct: 14 NKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDGDQYLEADFQWFLAIITGV 73 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ++ ++D +L L SL R L+ +LR + +++ DV V++ V+ AK Sbjct: 74 VKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKDVPVAVVMNEYVDIAKA 133 Query: 114 DKENR 118 E Sbjct: 134 FFEGD 138 >gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052] gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052] Length = 133 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R + LL + + ++ ++ + + + D V+ ++ Sbjct: 1 MNRKL-SREKAMELLFGMTLSKDTMEDAVEAFVENYEG-DIKEIDLTYVKQVLIGVNNNK 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID V+ L + + R +LR++ ++LY +V ++ A+E +R + + Sbjct: 59 EAIDKVIQENLHNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEITRRYSDEK 118 Query: 119 HFAKLVNSILRRVSRE 134 + +N +L ++ ++ Sbjct: 119 SVS-FINGVLDKIKQD 133 >gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796] gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796] Length = 134 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 1 MKSGMN-ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK + R + +L + S +L Y + + D +R + Sbjct: 1 MKKSLRYLREMVLKILYELEINSQSTINVLMQRYAEH----IQPEDFEFIRVRAEGIIEN 56 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 ID +LD + R + + ++ ++V ++ YL ++ ++ AVE +K Sbjct: 57 KDAIDKLLDELSIDWPTERMVVTDRLIMEIAVFEMNYLKLSPSIAINEAVELSK-LYGTE 115 Query: 119 HFAKLVNSILRR 130 K VN++L + Sbjct: 116 KSYKFVNAVLSK 127 >gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi B31] gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31] Length = 145 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRF 59 M R+++ + + + ++ + D+ D + ++ + ++V T Sbjct: 1 MDLMHEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFDN 60 Query: 60 LPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKE 116 L ID+++ + L SL R +LR+ V + + + + ++D A+ AK+ Sbjct: 61 LEHIDSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-G 119 Query: 117 NRHFAKLVNSILRRVSREK 135 +++ K +N IL + + Sbjct: 120 SKNSYKFINGILDALLKNM 138 >gi|320534351|ref|ZP_08034838.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 171 str. F0337] gi|320133433|gb|EFW25894.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 171 str. F0337] Length = 163 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----LVRAIVNVTL 57 + AR + +L ++ + + + + R +S + R I+N Sbjct: 21 TARTKARRRAIEILFEADQRGMLSSEGTEELRSFAQLRAVSSANHTEAPLYTREILNGVC 80 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 L ID + +L R + + RV+ +I+Y DV VD A+ ++ Sbjct: 81 DHLADIDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVGVDEAMTLSRMLS 140 Query: 116 ENRH 119 + Sbjct: 141 TDES 144 >gi|66828039|ref|XP_647374.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] gi|60475454|gb|EAL73389.1| NOL1/NOP2/Sun family protein [Dictyostelium discoideum AX4] Length = 680 Score = 70.3 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%) Query: 341 ACFQRKLLLQ--GISFVKPGGIVVFSNCSLDKQDSEEVVQKV---LRSSPIPVELVPLNS 395 A FQ ++ VK V++S CS + ++E+VV++ L ++V + Sbjct: 451 ADFQLSIIQHSFAFPNVKK---VIYSTCSTHQVENEDVVKRAIDELNKDGEKWKVVKILP 507 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + S + + + + IR+TP I GFF ++I Sbjct: 508 HWTNSRGLPIYKNSDYSIRMTPSKDFTI--------GFFVALFEKII 546 Score = 57.6 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 57/356 (16%), Positives = 115/356 (32%), Gaps = 39/356 (10%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 ++ ++ +++K+ S+ L + A+V TL++ ID +++ Sbjct: 6 QQAADVIEQLIQKKGSIKGLTYNRNVNVKTSKT-------CYALVCETLKYKGVIDQIIE 58 Query: 69 --FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + K LL V + ++L+ A + + + A Sbjct: 59 LTAGLEKEFKKNKTIKYSLLVVMIYELLFSANGKIKGGGQAKKLLSHYQAPINSALARMK 118 Query: 127 ILRRVSREKIELLQRIAGISIIPEW-FKERLENFYGKERVLAISDACISPLYIDLTVKFD 185 I ++VS L I +P + L N + + + + ++ +L K Sbjct: 119 IQKKVSENIDLLPDNIRYPITLPRYVRVNTLFNDCDENCIKNVIEHFVNVEGFELLSKPP 178 Query: 186 IET----------------------WAHKLNAVMLPTGGIRLKELPESIVSLPGFAEGVW 223 K L I + + G Sbjct: 179 KLQTKSITIKKENGTVEQQQQTTIILGEKEFYQDLDFPEILIFHHAVDLHDHKMLLNGQI 238 Query: 224 WVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEKLR 280 +QD ++ +P + +D C+APG KT + + + K+ A++ +R L Sbjct: 239 ILQDKASCLPSFILSPPPGSVCIDSCSAPGNKTSLLSAQMKNTGKIFAIEKDTKRCGTLI 298 Query: 281 CNLDRLHLYAEDIIEMDA----FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTR 332 R + I D K + +L D CS +G + R +L T+ Sbjct: 299 KLTKRSLCKNIETINDSFLNLKHDDPKFKDVEYILCDPSCSGSGIVNRLDYLLPTK 354 >gi|221055944|ref|XP_002259110.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193809181|emb|CAQ39883.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 570 Score = 70.3 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 16/194 (8%) Query: 248 LCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPK--- 304 + + A + ++ R ++L+ L + Sbjct: 305 ITCSLDMVNYYTTNRQGFFVANEFNRVRYDRLKQVLSKHLPKDLLTSNNFHVTNYNGLNV 364 Query: 305 ------KLFDAVLVDAPCSSTG--TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 + F +L+D PCS+ ++ D+L I +A Q +LL + Sbjct: 365 NSFLRFQRFHKILLDVPCSTDEHLIKKKKNDLLNKWTDKVIKNNASVQFELLNNSFQLLH 424 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRIT 416 G +V+S C+L Q+++ V++K+L+ V++V ++ S + R+ Sbjct: 425 TNGTLVYSTCALSHQENDHVIEKLLKKYKKQVQIVDFVKEEYQ-----KRFSRDDCDRLF 479 Query: 417 PDMLEKIDGVSSGM 430 + Sbjct: 480 SALFAGQPVEEDPT 493 >gi|71656502|ref|XP_816797.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881949|gb|EAN94946.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 561 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 46/187 (24%) Query: 293 IIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGI 352 + D + F +L+D PC+ G R I SA +QRKL + Sbjct: 365 TQCDEDVDSMWECEFHGILLDPPCTGMGL--RPKLNSHLITPQGIRDSADYQRKLFDSCV 422 Query: 353 SFVKPGGI--VVFSNCSLDKQDSEEVVQKVLRSSPIPV---------------------- 388 ++ G +V+S C++ ++E V L + P Sbjct: 423 KMLRRTGTSVLVYSTCTITLDENEANVLWALNTYPFLRLARAKTNDKRRLCLLGSTNFAN 482 Query: 389 -----------------ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 EL+ ++ + D +P +R P + G+ Sbjct: 483 GRRFLLEEEIQKAQRRNELLESHTVSTERGDTDEPENPLMILRFMPGL--STMPEEDGV- 539 Query: 432 GFFAVAL 438 GFF Sbjct: 540 GFFLAVF 546 >gi|67921757|ref|ZP_00515274.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501] gi|67856349|gb|EAM51591.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501] Length = 209 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R ID L+ VL L R Q +LR++VA+IL+LD+ + + Sbjct: 117 RQYAIELIATVARRRNDIDQQLEVVLKDWQLKRLAKIDQDILRLAVAEILFLDIPEKVAI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIE 137 + AVE AKR ++ + + +N +LRR + + + Sbjct: 177 NEAVELAKRYSDDDGY-RFINGVLRRFTDQMKQ 208 >gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella vestfoldensis SKA53] gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella vestfoldensis SKA53] Length = 155 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 21/147 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNV---TL 57 MKS AR + L + ++ ++ ++ +V T Sbjct: 11 MKS--AARFYAVQALFQMEATGQTVEGIVREFEDHRFGEIIDDV------ELVEGDVDTF 62 Query: 58 RF--------LPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLA 107 R ID + D L + R + + L R + A++L D V+ Sbjct: 63 RRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLDKDTPPKVVISEF 122 Query: 108 VEQAKRDKENRHFAKLVNSILRRVSRE 134 V A+ + K VN++L ++R+ Sbjct: 123 VAVAEAFSHDGKEPKFVNAVLDHMARQ 149 >gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149] gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149] Length = 132 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 9/123 (7%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 R +L + +L + L+L + + ++D+ ++ + + L Sbjct: 3 RTELREHIFKMLFQIEFN--TLEEMPKHLELYFEELTSAK--EKDKEYIQKKLEAVVEKL 58 Query: 61 PRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 IDA+L+ R +LR++V +I + DV ++ AVE AK+ Sbjct: 59 EEIDAILNEKATGWKTSRMNKVDLAILRLAVYEIKWDDDVPVKVAINEAVELAKKFSGEE 118 Query: 119 HFA 121 A Sbjct: 119 GPA 121 >gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 139 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57 M + M +R H + + + D+ + + +D + +V L Sbjct: 1 MTNKMESR----HAIREAAFQALFALATNPEADKDAVYAEVLPQDTEVPAYLTTLVEGVL 56 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 +DA L L L R +LR+ + +I Y + + + A ++ A+ AKR Sbjct: 57 SKQADLDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRY 116 Query: 115 KENRHFAKLVNSILRRVSR 133 +++ AK VN IL + Sbjct: 117 SDDQS-AKFVNGILANFIQ 134 >gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 137 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 12/124 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRIS--LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 + +R + +L + + S + L ++ F R +VN L Sbjct: 5 TRHESRQAAFQVLFALEKDPQSNKIDDLYEIVLNGKQFDDYLPR-------LVNGVLGSK 57 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 +D + L + R + +LR+++ ++ ++ +D A+E AK + Sbjct: 58 ADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVAIDEAIELAKTFADE 117 Query: 118 RHFA 121 Sbjct: 118 DDRK 121 >gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis F0421] gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis F0421] Length = 136 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R+++ L + S L+ E+ ++ +S+ + + + TL L ID + Sbjct: 9 RILAFQALFAWDFGQSSPEELVQFEWFETK-EPVSEEAFLFPKMLFLGTLEHLEEIDTHI 67 Query: 68 DFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 L + R + + ++R+ V +L+ D V+D AV A+ + F Sbjct: 68 KNNLHNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDEAVNLARSFGTDDSFK 123 >gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265] gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265] Length = 164 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 5/136 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + + ++ Sbjct: 1 MKTYRRQIREKILQALYTLELRDTDIDSAAGWLLTPEILA--DPKAMKFFNLLLGNIKEH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKEN 117 + ID + + R + +LR+++A++LY D+ ++ A+E AK+ Sbjct: 59 MEEIDRYIAAHTFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAIEIAKKFSST 118 Query: 118 RHFAKLVNSILRRVSR 133 +K VN IL + Sbjct: 119 DKSSKFVNGILDAIFN 134 >gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus ATCC BAA-974] Length = 166 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 4/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S ARL + LL + + L + L + + ++ L Sbjct: 15 SRRKARLRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQLTPYALVVLEGVRDHLEV 74 Query: 63 IDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 +D + L SL R + +LRV+V ++L+ +V VD A+E AK Sbjct: 75 VDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPEVPTAVAVDEALELAKG-LSTDE 133 Query: 120 FAKLVNSILRR 130 +N +L R Sbjct: 134 SPGFINGVLGR 144 >gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2] gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2] Length = 150 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52 M R ++ L + + + + L+ + + V + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPAYLDQL 60 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109 V ++ +D V+ L + R +LR+++ +++Y+D V + ++ A+E Sbjct: 61 VAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNEAIE 120 Query: 110 QAKRDKENRHFAKLVNSILRR 130 AK +++ VN IL Sbjct: 121 LAKTFSDDQSRK-FVNGILSN 140 >gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi 80a] gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi 94a] gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi 94a] Length = 142 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 5/138 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ D + ++ + ++V T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNNLEHI 61 Query: 64 DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + L SL R +LR+ V + + + + ++D A+ AK+ +++ Sbjct: 62 DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL + + Sbjct: 121 YKFINGILDALLKNMESC 138 >gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 169 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 2/112 (1%) Query: 12 SHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + R +++ S+ D + +++ LR P + Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAHLRDTEDFSEADAQWFKTLLHGVLREAPTLRERFTPY 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + L +L + ++++ +V ++ AVE AK F Sbjct: 92 VDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGFK 143 >gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi 29805] gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi 29805] Length = 693 Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 58/138 (42%), Gaps = 5/138 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ + + + + ++V T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVIGTFNNLEHI 61 Query: 64 DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + L SL R +LR+ V + + + + ++D A+ AK+ +++ Sbjct: 62 DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL + + Sbjct: 121 YKFINGILDALLKNMESC 138 >gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9] gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9] Length = 140 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 4/123 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + +R ++ +L + + + + S+ + + + + + Sbjct: 1 MGTRRKSRELTMQMLFQGDLGKQTPEQV--TKLFWSSVTDVDEETRGFAEDLYRIATSRG 58 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENR 118 IDA+++ + L R + LLR ++A++L + V++ ++E A+R Sbjct: 59 TEIDALIEEHSQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLEVARRYAAPE 118 Query: 119 HFA 121 Sbjct: 119 SIH 121 >gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279] gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279] Length = 152 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCL-------LDLEYGDSAFRLLSQRDQILVRAIVNVT 56 AR ++ +L + L ++ E D +L + + +V Sbjct: 2 RRKARELAFKVLFEHAVGGVPLEAAWQHATQEVEPEEADQEADVLDHEGLLFAQRLVQGY 61 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +D L + S + + +LR++ ++L+ ++++AV+ AKR Sbjct: 62 AAQQQTVDEALASTIEGWSFSQMAKTDLAVLRLATYEMLFEPTPYAPLIEVAVKIAKRY- 120 Query: 116 ENRHFAKLVNSILRR 130 + VN +L R Sbjct: 121 GGEDSGRFVNGVLAR 135 >gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter alkaliphilus HTCC2654] gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales bacterium HTCC2654] Length = 168 Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 11/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI------LVRAIVN 54 MKS +RL + L + + E+ D F + + L RAI+ Sbjct: 24 MKS--ASRLYAVQALFQMEAAGQGYDRV-RKEFEDHRFGAEYEEGEFEEGNVDLFRAILG 80 Query: 55 VTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAK 112 + +ID + D L + R +L+ L R + A+++ D V+ VE AK Sbjct: 81 EAVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVLGDTPPKVVIVEFVEVAK 140 Query: 113 RDKENRHFAKLVNSILRRV 131 H K N++L + Sbjct: 141 AFFPEGHEPKFTNAVLDHM 159 >gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3] gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3] Length = 154 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 3/135 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S +R ++ L A LS+++ + Sbjct: 1 MASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDFCARFNLSEKNFPHFFTLAQGVKNRW 60 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +++ +L L R + ++R+++ ++LY DV ++ A+E K+ Sbjct: 61 EKLNDLLAESSEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIEIGKKY-GTD 119 Query: 119 HFAKLVNSILRRVSR 133 +N +L R+++ Sbjct: 120 ESGAFINGVLDRINK 134 >gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501] gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501] Length = 149 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 9/136 (6%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57 S R ++ L + ++ + ++++ + V +V Sbjct: 6 SRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLDTLVGGVC 65 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V++ L ++ + R +LR+++ ++ Y DV ++ A+E AK Sbjct: 66 AKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125 Query: 115 KENRHFAKLVNSILRR 130 ++R VN +L Sbjct: 126 SDDRSRK-FVNGVLSN 140 >gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 137 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 7/110 (6%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV- 70 +L + S+ ++ + ++ RID +LD Sbjct: 13 VEVLYEAEVRATSVEDVIRRRRAQPEPPIND-----FTESLARSVDERRERIDELLDTYA 67 Query: 71 LISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 + +L R + +LR+ ++L+ D+ D + AV AK + Sbjct: 68 IGWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAVGVAKELSTDES 117 >gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii A14S] gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii A14S] Length = 142 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ D F + ++ + ++VN T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGFDIENESIKSFYSSLVNGTFNNLEHI 61 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + SL R +LR+ V + + + + V+D A+ AK+ +++ Sbjct: 62 DSLIRNISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL + + Sbjct: 121 YKFINGILDALLKNMENC 138 >gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus TK-6] gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus TK-6] gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6] Length = 134 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M AR + +L K L + + + + + + +R +V ++ Sbjct: 1 MIYKQKARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSER--RRYIRKLVRTYMQKA 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 ID+++ + + R Y + +LRV++A+IL++ V V + + + Sbjct: 59 SEIDSLISELSQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTLKYAGKE 118 Query: 120 FAKLVNSILRR 130 AK VN +L R Sbjct: 119 PAKFVNGVLGR 129 >gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans UA159] gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans UA159] Length = 142 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 6/123 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61 S + R + L + +LT + + + ++ Sbjct: 8 SRRDLRERAFQALFSLEFGGDNLTAA--RFAYTYDKNEEEEAELPLFLLTLIQGVSDCRR 65 Query: 62 RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L S L R + LLR+ + +I Y + + ++ +E AK+ + + Sbjct: 66 EIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEK 125 Query: 119 HFA 121 Sbjct: 126 SSK 128 >gi|71756143|ref|XP_828986.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834372|gb|EAN79874.1| hypothetical protein, conserved [Trypanosoma brucei] gi|261334917|emb|CBH17911.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 566 Score = 69.5 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKS 400 A QRKLL + VV+S CS+ + ++EEVV++VL+ + L++ + Sbjct: 456 ARLQRKLLAHSLLSFDNCRTVVYSTCSVHEAENEEVVRQVLQDERVQARGWALSNIMPTT 515 Query: 401 IDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 + + + + D +GFF R++ Sbjct: 516 WRTRGWRNDSDTFPL--EYTIRCDPEVDATNGFFVARFDRVV 555 >gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi ZS7] gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi Bol26] gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi ZS7] gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi Bol26] gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi JD1] Length = 142 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 5/138 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ D + ++ + ++V T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNNLEHI 61 Query: 64 DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + L SL R +LR+ V + + + + ++D A+ AK+ +++ Sbjct: 62 DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREKIEL 138 K +N IL + + Sbjct: 121 YKFINGILDALLKNMESC 138 >gi|82594878|ref|XP_725610.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23480683|gb|EAA17175.1| sun family protein-related [Plasmodium yoelii yoelii] Length = 364 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%) Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + FQ+ +L + +K ++S CS ++++E+V++ VL + Sbjct: 267 KINNLSNFQKDILNHALITIKTAKTFIYSTCSFFEEENEQVIKNVLEKNMGFYVENAGTD 326 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 + + +R P+ G F L R+ Sbjct: 327 KFL--FKNGKYEFSDKCVRTFPN--------RDNCRGIFICKLCRK 362 >gi|124802479|ref|XP_001347482.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] gi|23495063|gb|AAN35395.1| conserved Plasmodium protein [Plasmodium falciparum 3D7] Length = 601 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 64/219 (29%), Gaps = 20/219 (9%) Query: 221 GVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLR 280 + + + N +V++ G + + S + + Sbjct: 386 DFIYKSNMANICLHPYKDDQKNKNVINKYNTKGNNNNNNNNNNNNSDNSNNSNKYILLQS 445 Query: 281 CNLDRLHLYAEDIIEMDAFD-YCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVK 339 + D + K + G I + P + + K Sbjct: 446 D-----GHKNIPYNKQDNIISHNNKFDEHKNNSFSDDVLKGNIPKVPTCFINK----VNK 496 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWK 399 + FQ+ +L I+ K I ++S CS ++++E+V+Q VL P L + Sbjct: 497 LSEFQKNILTHAINIFKTAKIFIYSTCSFFEEENEQVIQYVLTKYPNIHLLNAGKDKFLF 556 Query: 400 SIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 + + +R P + G F + Sbjct: 557 T--NGKYVFSNKCVRTFP--------LIHSCRGIFISKM 585 >gi|68071013|ref|XP_677420.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56497533|emb|CAH97664.1| conserved hypothetical protein [Plasmodium berghei] Length = 480 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 13/107 (12%) Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS-PIPVELVPLN 394 I + FQ+ +L + +K V+S CS ++++E+V++ VL + VE ++ Sbjct: 383 KINNLSNFQKDILNHALITIKTAKTFVYSTCSFFEEENEQVIKSVLEKNMGFYVENAGID 442 Query: 395 SAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 +K+ + +R P+ + G F L R+ Sbjct: 443 KFLFKN---GKYEFSDKCVRTFPNRDKCR--------GIFICKLCRK 478 >gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum ATCC 14931] gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum 28-3-CHN] gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum ATCC 14931] gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum 28-3-CHN] Length = 139 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 11/127 (8%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTL 57 M R V+ L + + +D E L+ +++ + +V Sbjct: 1 MTFKRRKIREVAFQTLFAM-----ASDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVS 55 Query: 58 RFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 D ++ L SL R + +LR+++ ++ Y DV +D A+E K+ Sbjct: 56 EHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKF 115 Query: 115 KENRHFA 121 +++ Sbjct: 116 SDDKSRK 122 >gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A] gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A] Length = 134 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 12 SHLLSCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L + + + D+ + ++ ++ RID +++ Sbjct: 1 MKILYAYRFEDGQQDIMEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEK 60 Query: 70 VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L R +LLR++V ++L+ DV +D AV+ A VN I Sbjct: 61 YSKDWPLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119 Query: 128 LRR 130 L R Sbjct: 120 LGR 122 >gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium diphtheriae NCTC 13129] gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium diphtheriae] Length = 182 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 4/123 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLP 61 S AR + +L + I +++ S + IV+ L Sbjct: 15 SRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAMELD 74 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 R+D ++ L SL R + +LRVSV ++++ DV + VE A + Sbjct: 75 RLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYSTDV 134 Query: 119 HFA 121 A Sbjct: 135 SPA 137 >gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis CGDNIH1] gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis CGDNIH1] Length = 163 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 13/130 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR----------LLSQRDQILVRA 51 + +R+ + L + + SL +++ + + L Sbjct: 6 RPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPLFSR 65 Query: 52 IVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV-DLAV 108 IV + ID +L L L R L+ LLR ++ D VV + + Sbjct: 66 IVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVINEYL 125 Query: 109 EQAKRDKENR 118 + A + Sbjct: 126 DIAHGFFQGE 135 >gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245] gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245] Length = 164 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 5/136 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + ++ Sbjct: 1 MKTYRRQIREKILQALYTIELRDTDIDSAAGWLLTQEILD--DPNAMKFFNMLIGSIKAH 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + ID ++ + R + +LR+++A+ILY D+ ++ A+E AK+ Sbjct: 59 MSEIDCYIERHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAIEIAKKFSST 118 Query: 118 RHFAKLVNSILRRVSR 133 +K VN IL + Sbjct: 119 EKSSKFVNGILDAIFN 134 >gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC 3773] Length = 138 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 11/123 (8%) Query: 3 SGMNARLVSSHLLSCVMRK--RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 S +R + +L + + S+ L ++ + R +VN L Sbjct: 5 SRHESRQAAFQVLFALEKDPTSNSIDSLYEIVLDGKDYDDYLPR-------LVNGVLGSK 57 Query: 61 PRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 +DA + L + + R + +LR+++ ++ V +D A+ AK + Sbjct: 58 ADLDAHITAHLATGWAINRINKADLVILRLAIYELNNQLVPYKVAIDEALILAKTFADED 117 Query: 119 HFA 121 Sbjct: 118 DRK 120 >gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs] gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs] Length = 138 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M + AR ++ +L + ++ + + ++ + + ++N + L Sbjct: 1 MSRKL-ARELTMKVLFEMHINNDFNIQRVEHHLFEG---SIEEQQKEYIHKVLNEAILNL 56 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID++++ L R +LR++ ++I+Y+ D+ ++ A+E AK + Sbjct: 57 EAIDSIIEEYSTSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELAK-IYGSD 115 Query: 119 HFAKLVNSILRRVSRE 134 VN IL + + Sbjct: 116 ETPNFVNGILGKYVEQ 131 >gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum magnetotacticum MS-1] Length = 156 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 7/135 (5%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFR---LLSQRDQILVRAIVNVTLR 58 ARL + +L + L A ++ D L+ +V Sbjct: 9 AKRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAAEPKGRMADPDSSLLNQVVRGVSA 68 Query: 59 FLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDK 115 L ID + L ++ R + L+ ++R ++ + V+ A Sbjct: 69 QLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQTPARVCISEWVDVAHAFY 128 Query: 116 ENRHFAKLVNSILRR 130 LVN++L Sbjct: 129 SGPE-PGLVNAVLDH 142 >gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri DSM 20016] gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri JCM 1112] gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016] gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112] Length = 138 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + R + +L + + + + + + +VN Sbjct: 1 MSLNRHMIREEAFQVLFALQSDSEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 56 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 ++D ++ +L S + R +LR+++ +I Y +V ++ A+E K Sbjct: 57 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 116 Query: 117 NRHFA 121 ++ Sbjct: 117 DKSRK 121 >gi|77407589|ref|ZP_00784390.1| sun protein [Streptococcus agalactiae H36B] gi|77173802|gb|EAO76870.1| sun protein [Streptococcus agalactiae H36B] Length = 110 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ L V K L+ S LS +D+ LV IV T+ ++ Sbjct: 9 ARGLALMTLEEVFDKGAYSNIALNKSLKKSR---LSDKDRALVTEIVYGTVARKITLEWY 65 Query: 67 LDFVLISSLPRKKYSL 82 L + + + + Sbjct: 66 LSHFI-VDRDKLELWV 80 >gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum 70/3] Length = 143 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 8/143 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R + +L + +L +L+ SQ + +V Sbjct: 7 TRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSVK-----LVKGVAEHEDE 61 Query: 63 IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ +++ L R Y ++R+++ ++ Y V D ++ A+E AK ++ Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAKEY-ADKTD 120 Query: 121 AKLVNSILRRVSREKIELLQRIA 143 + +N +L ++ Q A Sbjct: 121 VRFINGVLNSYYKDNPTKEQPDA 143 >gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC 700122] gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC 700122] Length = 218 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 7/115 (6%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R ++ +L + +L+ L++ R ++ ID ++ Sbjct: 13 RRSAASVLYQSEIIGKPVDRILEE-GDIPEEAGLNE----YGRLLLLGFSAHRAEIDRII 67 Query: 68 DFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 + + R ++LLR++V ++ Y+D V ++ AVE AK + + Sbjct: 68 SERSANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSINEAVEIAKEFGGDDSY 122 >gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC 49175] gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC 49175] Length = 153 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 17/145 (11%) Query: 3 SGMNARLVSSHLLSCVMRKRI-----SLTCLLD-LEYGDSAFRLLSQRD-------QILV 49 R+++ L + +L+ L+ E + +++ D Sbjct: 7 KRRALRVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDLINEVPEIAYS 66 Query: 50 RAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQIL--YLDVADYAVVDL 106 A+V L +ID +++ L R ++RV++ ++ L+V ++ Sbjct: 67 IALVRGVQNNLEKIDGLIEKHSKRWKLNRIVRLDLIIMRVAIFEMTSPELEVPQTVALNE 126 Query: 107 AVEQAKRDKENRHFAKLVNSILRRV 131 A+E AK + AK +N IL Sbjct: 127 AIEIAKTY-SDEKSAKFINGILSNF 150 >gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505] gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505] Length = 213 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67 + +L + + L L L+ +D + + IV P +D ++ Sbjct: 83 ARTMLQEAIGCTQTAINQLGLAVDFPELIQLANQDKEVRNYAKEIVVTVDENRPILDQII 142 Query: 68 DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + R + +L+++VA++ +++V ++ AVE AKR + + +N Sbjct: 143 SQALVDWQVTRLAQIDRDILQIAVAEMKFMEVPPSIAINEAVELAKRYSGDDG-HRFING 201 Query: 127 ILRRVSREKIE 137 +LRRV +K Sbjct: 202 VLRRVIDQKQP 212 >gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC 25296] gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18] gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC 25296] gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18] Length = 136 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 8/132 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S ARL + +L ++ +L +S I+ Sbjct: 1 MNSRTKARLRALEVLFEADQRNEDYIEVLRRR-RLYTVAQIS----AYSEEIIRGVRDHD 55 Query: 61 PRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 I ++ S R + +LR+ ++LY D V D + AV A+ N Sbjct: 56 EEIREFVETYARDWSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVGLARVLSTNE 115 Query: 119 HFAKLVNSILRR 130 K VN +L + Sbjct: 116 S-PKFVNGLLDK 126 >gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans NN2025] gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans NN2025] Length = 147 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 6/123 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLP 61 S + R + L + +LT + + + ++ Sbjct: 13 SRRDLRERAFQALFSLEFGGDNLTAA--RFAYTYDKNEEEEAELPLFLLTLIQGVYDCRR 70 Query: 62 RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L S L R + LLR+ + +I Y + + ++ +E AK+ + + Sbjct: 71 EIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIEIAKKYSDEK 130 Query: 119 HFA 121 Sbjct: 131 SSK 133 >gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi N40] Length = 142 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLE-YGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ D + ++ + ++V T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIENESIKSFYSSLVIGTFNNLEHI 61 Query: 64 DAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + L SL R +LR+ V + + + + ++D A+ AK+ +++ Sbjct: 62 DSLIRDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREK 135 K +N IL + + Sbjct: 121 YKFINGILDALLKNM 135 >gi|309378212|emb|CBX23156.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 141 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + S F + D+ L + T Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 58 AAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170] gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170] Length = 185 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 25/149 (16%) Query: 6 NARLVSSHLLSCV-MRKRISLTCLLDLEYGDS--------------------AFRLLSQR 44 ARL + L + + + + ++ S L Sbjct: 24 AARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMAIVEVADPEGIFDPTEEIAALEPP 83 Query: 45 DQILVRAIVNVTLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQIL-YLDVADY 101 D L +V L R+D V+ L R + ++ +LR V ++L Sbjct: 84 DGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPPR 143 Query: 102 AVVDLAVEQAKRDKENRHFAKLVNSILRR 130 + V+ A +VN++L R Sbjct: 144 VAIKEYVDIAAAFYSGAE-PGMVNAVLDR 171 >gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88] gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88] Length = 153 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 22/155 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRIS-------LTCLLDLEYG-----------DSAFRLLS 42 MK +R ++ LL +M K+ + L L E D L Sbjct: 1 MK-RKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLD 59 Query: 43 QRDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVAD 100 + D + + +D ++ L + +L R +LR+ +IL+ +V D Sbjct: 60 EVDLEYLIHTLKGVEENSKVLDEHIEKYLKNWTLNRLAKVDLAILRLCSYEILFSNEVPD 119 Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 ++ VE AK+ + +N++L +++++ Sbjct: 120 NVAINEGVELAKKY-GDDKSPAFINAVLDKIAKQM 153 >gi|256053079|ref|XP_002570036.1| williams-beuren syndrome critical region protein [Schistosoma mansoni] gi|227287392|emb|CAY17655.1| williams-beuren syndrome critical region protein, putative [Schistosoma mansoni] Length = 611 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 78/233 (33%), Gaps = 35/233 (15%) Query: 192 KLNAVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAA 251 + + + ++ L + +QD ++ ++ N VLD CAA Sbjct: 207 EFMLDYHLPHLLLVFPSGTALYDLELYKSKSLLIQDKASCFGPEILQPDPNSDVLDACAA 266 Query: 252 PGGKTAQLIVS---GAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF- 307 PG KT QLI + + +D K + + + D P Sbjct: 267 PGNKTLQLISMLSNKSTIFVVDRDPNSKHKKSIQSSQ---PSIEAYCSDFLSIDPYHRKF 323 Query: 308 ---DAVLVDAPCSSTGTIRRH------PDVLWTRDTDDI-------------VKSACFQR 345 ++L+D CS +G R +T D + + Q Sbjct: 324 SNVQSILLDPSCSGSGLSIRQPDGGDEQFDKFTHKKSDNYIDVYSEEYSSRLKRLSNLQA 383 Query: 346 KLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 LL F VV+S CS+ +++E VV+++ E +P+ + Sbjct: 384 MLLKHAFKFPNVQ-RVVYSTCSIHPEENESVVREI-----ANYETIPITNEEG 430 >gi|326925328|ref|XP_003208869.1| PREDICTED: putative methyltransferase NSUN4-like [Meleagris gallopavo] Length = 390 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 59/268 (22%), Positives = 106/268 (39%), Gaps = 27/268 (10%) Query: 193 LNAVMLPTGGIRLKELPESIVSL-PGFAEGV----WWVQDASASIPVQLFGTLNNLSVLD 247 L + + I P + + + +++ DA++ +PV + VLD Sbjct: 129 LLHASVSSNIKCYTFPRGDISRFRPAWPDSLGILSYYLMDAASLLPVLALNVQLDDLVLD 188 Query: 248 LCAAPGGKTAQLIVSGAKVT--ALDVSKRRLEKLRCNLDRLHLY------AEDIIEMDAF 299 LCAAPGGKT L+ +GA A DVS R ++L L+ + + + Sbjct: 189 LCAAPGGKTLALLQTGACGHLAANDVSFSRTKRLYHILNSYIPKEIRETVSITSHDGRNW 248 Query: 300 DYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 F VLVD PC++ + ++ T + Q +LL+ GI KP Sbjct: 249 GELQGGTFHKVLVDVPCTTDRHSVMEEENNIFHKMRTKERQMLPMLQLQLLMAGILAAKP 308 Query: 358 GGIVVFSNCSLDKQDSEEVVQKV--LRSSPIPVELVPLNSAYWKSIDMAMALSPEGWI-- 413 G VV+S CSL + +E VV++ + + + + + ++++ + G Sbjct: 309 EGEVVYSTCSLSQLQNEHVVERAIDIAETQFNITVHVEDLSHFRMLFQDTFCFFSGCRLG 368 Query: 414 -RITPDMLEKIDGVSSGMDGFFAVALRR 440 + P + + + LRR Sbjct: 369 ELVLPHLTANFGPL-------YFCKLRR 389 >gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri MM2-3] gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri MM2-3] Length = 141 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + R + +L + + + + + + +VN Sbjct: 4 MSLNRHMIREEAFQVLFALQSDSEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 59 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 ++D ++ +L S + R +LR+++ +I Y +V ++ A+E K Sbjct: 60 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 119 Query: 117 NRHFA 121 ++ Sbjct: 120 DKSRK 124 >gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis MC58] gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC 14685] gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC 23970] gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis ATCC 13091] gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58] gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275] gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC 14685] gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC 23970] gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis ATCC 13091] gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis H44/76] gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis OX99.30304] gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis M13399] gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis CU385] gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240013] gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis H44/76] gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240355] gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis M04-240196] Length = 141 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + S F + D+ L + T Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 58 AAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54] Length = 163 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 3/131 (2%) Query: 12 SHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + R +++ S+ D + +++ LR P + Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAHLRDTEEFSEADAQWFKTLLHGVLREAPALRERFTPY 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + L +L + ++++ +V ++ AVE AK F VN +L Sbjct: 92 VDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGFK-FVNGVLD 150 Query: 130 RVSREKIELLQ 140 +++ + Sbjct: 151 KLAADVRSHEM 161 >gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60] gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60] Length = 186 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 4/118 (3%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR L + + ++A + +++ + + A Sbjct: 30 KARRFVVQGLYEWLLTGNPSHEIEAHTRSENAMHTVH---LGYYHELLSKIIEQSDDLIA 86 Query: 66 VLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAK 122 +D +L R Q +L V ++ +L+V V+D A++ + + Sbjct: 87 YIDSLLNRPWTRLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTHFGSSDGYKM 144 >gi|218296634|ref|ZP_03497352.1| NusB antitermination factor [Thermus aquaticus Y51MC23] gi|218242947|gb|EED09480.1| NusB antitermination factor [Thermus aquaticus Y51MC23] Length = 151 Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 10/143 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD------SAFRLLSQRDQILVRAIVN 54 M+ AR ++ L + + L L + L + + R ++ Sbjct: 1 MRRR--ARELAMRALFAHTQGGVDLEEALRHALEEMGGEEEPYGDPLDEEGVVFARRLLL 58 Query: 55 VTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 +D +L + + + +LR++ ++LY ++++AV+ A R Sbjct: 59 GYKAHQEEVDRILKETVEGWDFGQMAKTDLTILRLATYEMLYEPTPFAPLIEVAVKIANR 118 Query: 114 DKENRHFAKLVNSILRRVSREKI 136 H VN +L R+ R Sbjct: 119 Y-GGEHSGAFVNGVLGRLYRRIQ 140 >gi|328869977|gb|EGG18352.1| NOL1/NOP2/Sun family protein [Dictyostelium fasciculatum] Length = 707 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 17/115 (14%) Query: 333 DTDDIVKSACFQRKLLLQGISF--VKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIP 387 + + + A FQ ++ F VK V +S CS+ + ++E+VV + L+ + Sbjct: 431 NQNRLQTLADFQLSIIKHAFGFPNVKK---VAYSTCSIHQTENEDVVFRALKYLNAKKPT 487 Query: 388 VELVPLNSAYWKSIDM-AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 +LV + + KS M + + IR P++ GFF ++ Sbjct: 488 WKLVKILPNWNKSRGFAGMYPTSDYSIRTAPEV--------DNTIGFFVALFEKI 534 Score = 50.3 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 101/290 (34%), Gaps = 16/290 (5%) Query: 49 VRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAV 108 A+V TL++ ID ++ + ++ ++K ++ V + +L+ D A Sbjct: 41 AYALVCETLKYKDIIDELITTI--PNIKKEKNLKYGIMLVMIYDLLFSTAKDIRGGGFAK 98 Query: 109 EQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAI 168 + K + + I ++VS L + I ++P + + ++ Sbjct: 99 KIVIGYKTQLNSSLARLKIKKQVSSNTGLLPESIRNPLVLPRYVRINTLAKKTQQTDEQF 158 Query: 169 SDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIR-------LKELPESIVSLPGFAEG 221 I + D T+ KL+ + + G Sbjct: 159 IQQIIQKFKDRGFILKDGNTYQSKLDFSNDKFFYQDNDFKEIIIFTSAIDLHDDELLTTG 218 Query: 222 VWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKT---AQLIVSGAKVTALDVSKRRLEK 278 +QD ++ +P + +V+D C+APG KT + L+ + ++ A++ K+R Sbjct: 219 QIILQDKASCLPSYILAPPPGATVIDSCSAPGNKTSLLSALMGNTGRIYAIEKDKKRCGT 278 Query: 279 LRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIRR 324 L R I + + +L D CS +G + R Sbjct: 279 LIKLTTRSQCKNITAINDSFLECSWDDPKFKDVEYILCDPSCSGSGIVNR 328 >gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium tuberculosis SUMu007] Length = 232 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Query: 14 LLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI- 72 LL + IS ++D + + R A+ ID ++ L Sbjct: 3 LLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRG 62 Query: 73 SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 +L R + +LRVSV ++L+ DV + VVD AV+ AK VN +L +V Sbjct: 63 WTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKE-LSTDDSPGFVNGVLGQV 121 Query: 132 S 132 Sbjct: 122 M 122 >gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus HN001] gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus GG] gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus Lc 705] gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus HN001] gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus GG] gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus Lc 705] gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus GG] Length = 135 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Query: 30 DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84 ++ + + +D + A+V L +DA L L L R Sbjct: 22 PEADKNAVYAEVLPKDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDLI 81 Query: 85 LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 +LR+ + +I Y + + + A ++ A+ AKR + AK VN IL Sbjct: 82 ILRLGLYEIRYEEAMPEAAAINEAINLAKRY-SDEQSAKFVNGILANF 128 >gi|218767806|ref|YP_002342318.1| transcription antitermination protein NusB [Neisseria meningitidis Z2491] gi|296315043|ref|ZP_06864984.1| transcription antitermination factor NusB [Neisseria polysaccharea ATCC 43768] gi|313668841|ref|YP_004049125.1| RNA polymerase antitermination factor [Neisseria lactamica ST-640] gi|22095968|sp|Q9JVD5|NUSB_NEIMA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|121051814|emb|CAM08120.1| putative RNA polymerase antitermination factor [Neisseria meningitidis Z2491] gi|296838251|gb|EFH22189.1| transcription antitermination factor NusB [Neisseria polysaccharea ATCC 43768] gi|313006303|emb|CBN87766.1| putative RNA polymerase antitermination factor [Neisseria lactamica 020-06] gi|319410056|emb|CBY90390.1| N utilization substance protein B (NusB protein) [Neisseria meningitidis WUE 2594] Length = 141 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 37/123 (30%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + F + D+ L + T Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFA---KADEELFNKLFFGTQTN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 58 AAEYIRQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFA 121 Sbjct: 118 GHK 120 >gi|313896544|ref|ZP_07830093.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 137 str. F0430] gi|312974729|gb|EFR40195.1| transcription antitermination factor NusB [Selenomonas sp. oral taxon 137 str. F0430] Length = 121 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 21 KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKK 79 SL + E A L ++D + +V T L IDA + L R Sbjct: 6 NEASLHDV--SEIAAGAVEGLKEKDLPYAQGLVRGTRAALGEIDAAIARSAKEWKLERMP 63 Query: 80 YSLQQLLRVSVAQILYL--DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 + L+R++ ++ Y + ++ AVE AK+ + VN IL + + Sbjct: 64 GVDRNLIRMAFYEMYYQEERIDPGTAINEAVELAKKY-GAEDAGRYVNGILSAMQK 118 >gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A] gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A] Length = 132 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 7/117 (5%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + +L + + + + + + +VN ++D + Sbjct: 3 REEAFQVLFALQSDSEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREHQDQLDEQI 58 Query: 68 DFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 + +L S + R +LR+++ +I Y +V ++ A+E K ++ Sbjct: 59 NDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRK 115 >gi|291000438|ref|XP_002682786.1| predicted protein [Naegleria gruberi] gi|284096414|gb|EFC50042.1| predicted protein [Naegleria gruberi] Length = 815 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 88/305 (28%), Gaps = 110/305 (36%) Query: 245 VLDLCAAPGGK-------TAQLIVSGAKVTALDVSKRRLEKLRCNLDR---LHLYAEDII 294 LD+C+APG K + D+ ++RL L NL+R I Sbjct: 264 YLDMCSAPGSKSAQMVEYYLNQGDYSKFLICNDIDRKRLGTLFSNLNREPNQFTNNVVIS 323 Query: 295 EMDAFDYCPK-----------KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACF 343 +A + +L DA CS GT+R+ D+ D + Sbjct: 324 HYNAVTLHQQLSSSSLNGQVLSHIHHILCDAVCSGDGTLRKSRDLWERWTYDHGHHNHAT 383 Query: 344 QRKLLLQGI---------------------------------SFVKPGGI--VVFSNCSL 368 Q +L+ + +K G +V+S CSL Sbjct: 384 QVSILVSAMQIMLTSFNNENTSLDENTSGETTEEITTENSSLKLIKYDGEYEIVYSTCSL 443 Query: 369 DKQDSEEVVQKVLRSSPIPVELVPLNSA---------------YWKSID----------- 402 + + E VV + +R + ELV L ++ WK +D Sbjct: 444 NPIEDEAVVAEAIRKTNYRFELVDLETSLQNINNNIKYLKGINDWKVVDSLGNVVEKFED 503 Query: 403 ---------------MAMALSPEGWIRITPDML-------------EKIDGVSSGMDGFF 434 EG +I P M +I + GF+ Sbjct: 504 IQDTSIEFTIKSGDKSENMPKKEGCKKIQPSMFIKDDIKDMNLQYTMRILPHMNNSGGFY 563 Query: 435 AVALR 439 LR Sbjct: 564 VAKLR 568 >gi|326919281|ref|XP_003205910.1| PREDICTED: putative methyltransferase NSUN7-like [Meleagris gallopavo] Length = 686 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 67/464 (14%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67 ++ + + + +L DS +L +D Q L + L++ ++ +L Sbjct: 31 AAKI-FQGIHNKKPKDRMLVRYGDDSVSPMLILKDEYSQRLSYELAFSALKYQDLLEEIL 89 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + L LL V + + + A+ + + + Sbjct: 90 LDSHVYPCHSIPDELTSLLLVMLYDLQDREFEARVTSSEEEPIAEVREIENFLFRFRIKL 149 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 ++R ++ +PE ++ L + D+ + Sbjct: 150 AAALAR-CRIKYDALSIEYFLPETIRK--HEQRASALPLCAWINTLKTSLQDVFRDLKSK 206 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQL 236 + + L + +++ +L FA+ +QD S SI V Sbjct: 207 GFTEVESMSDFKGYTYCLDQHCHNVLFFPSSLKDELLNLDLFADCKLLLQDKSRSIAVHS 266 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALD-------VSKRRLEKLRCNLDRLHLY 289 L N + A G +S + + + + +L + Sbjct: 267 VQALLNTDDDVIVAHLGSHLTVAHMSALRSHSTATVFVCGVKTSAKAAELEDLFSHMGCK 326 Query: 290 AEDIIEMDAFDYCPKKL--FDAVLVDAPCSSTGTIRRHPDVLWT---------------- 331 ++ D + PK +A ++ +G +P Sbjct: 327 NIQLLYEDFTEIEPKDPRLQNAKVILLTPRCSGLSFSNPIDFILTEHGDAGLLKDLYQGS 386 Query: 332 RDTDDIVKSACFQRKLLLQGISF-VKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVEL 390 D + A Q L+ + F V+ +V+ S+ +++E+VVQK L +L Sbjct: 387 VSKDKLCVLAERQLNELMHAMKFQVQS---IVYCTSSVYPEENEQVVQKALEFGVKGKKL 443 Query: 391 VPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFF 434 P R+ P +L + S D FF Sbjct: 444 KP--------------------FRVIPPVLPECSNPESCTDSFF 467 >gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC 51599] gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC 51599] Length = 130 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 5/133 (3%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVL 71 + + S + ++ + D+ ++ T+ ++A+L L Sbjct: 1 MQGIYQWLL---SAEDIGAIQAHIETSPGFDKADRSHFDTLLKGTISQASALEAILLPSL 57 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 L + +L + ++ L ++ V++ AVE AK + VN +L R Sbjct: 58 DRPLNLLSPVERAILMQATFELKDLQEIPYRVVINEAVELAKNFGGTDGYK-YVNGVLDR 116 Query: 131 VSREKIELLQRIA 143 ++ R A Sbjct: 117 IAPSVRPHEVRPA 129 >gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756] gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 8_1_57FAA] gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 3_1_46FAA] gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756] gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 8_1_57FAA] gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 3/120 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R +L + S+ +L Y ++D+ ++ L + I Sbjct: 3 RTELREHIFKMLFQIEFND-SVDMPENLNYYFETLEDAKEKDKQYIQNKYEAILSHIEEI 61 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 D +L+ R +LR+++ +I + DV ++ AVE AKR + + Sbjct: 62 DGLLNENATGWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAKRFGGDNSSS 121 >gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC 6803] gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803] Length = 275 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R +ID L + L R Q +LR+++A++ YL V + Sbjct: 174 RKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYLGVPQKVAI 233 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130 + AVE AKR + + +N +LRR Sbjct: 234 NEAVELAKRYSG-QDGHRFINGVLRR 258 >gi|332705392|ref|ZP_08425470.1| transcription antitermination factor NusB [Lyngbya majuscula 3L] gi|332355752|gb|EGJ35214.1| transcription antitermination factor NusB [Lyngbya majuscula 3L] Length = 209 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + I+ R ID +L+ L L R + +LR++VA+I +L + D + Sbjct: 113 RSYTLEIIKAVSRRQLEIDQMLNQSLKDWQLKRLPRIDRDILRMAVAEIAFLGIPDRVAI 172 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130 + AVE AKR + + +N +LRR Sbjct: 173 NEAVELAKRYSDEEG-HRFINGVLRR 197 >gi|302652941|ref|XP_003018309.1| NOL1/NOP2/sun domain protein, putative [Trichophyton verrucosum HKI 0517] gi|291181937|gb|EFE37664.1| NOL1/NOP2/sun domain protein, putative [Trichophyton verrucosum HKI 0517] Length = 528 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 53/305 (17%), Positives = 90/305 (29%), Gaps = 76/305 (24%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLF----GTLNNLSVLDLCAAPGGKTAQL------- 259 I S + EG +QD ++ P L ++D CAAPG KT L Sbjct: 198 DITSSSAYKEGRLILQDKASCFPAYLLLGDHPGQWKGDLIDGCAAPGNKTTHLASLLSST 257 Query: 260 -IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVL------V 312 +V +LD S R + L+ + + + + Sbjct: 258 PEKQKNRVFSLDASHSRSKILQTMVKKAGASNIVTVLPGQDFLALDPADTRFQHVTALLL 317 Query: 313 DAPCSSTGTIRRHPD----------------------VLWTRDTDDI------------- 337 D CS +G +R + + Sbjct: 318 DPSCSGSGITKREDVPQLDLPKSKSELTLATTGSSKGSKNRKRKRENPADSSSPGSSPTT 377 Query: 338 ----------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS--- 384 K A Q +++ F V +S CS+ +++E+VV +VL SS Sbjct: 378 EAKEDESERLAKLANLQSQIVEHAFGFPAAT-RVTYSTCSIHHKENEDVVARVLASSIAK 436 Query: 385 --PIPVELVPLNS---AYWKSIDMAMALSPEGWIRITPD----MLEKIDGVSSGMDGFFA 435 +EL + W + + E +++P+ + G GFF Sbjct: 437 NLGWRLELRSEQARGLRNWHHRGILPGDTSERPPQLSPEQTEACIRCWPAGDEGTGGFFV 496 Query: 436 VALRR 440 R Sbjct: 497 AIFVR 501 >gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC 51142] gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B [Cyanothece sp. ATCC 51142] Length = 209 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R ID L+ VL L R Q +LR++VA+IL+LDV + + Sbjct: 117 REYAIELIGTINRRRKEIDEQLEAVLKDWQLKRLAKIDQDILRLAVAEILFLDVPEKVSI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 + AVE AKR ++ + + +N +LRR + Sbjct: 177 NEAVELAKRYSDDDGY-RFINGVLRRFTDHIKHN 209 >gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753] gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753] Length = 134 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 14/126 (11%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57 MK AR + L+ + SL L++ RD + + + Sbjct: 1 MK-RHEAREQAFFLIFERTFQEASLEELVESAQL--------ARDITICGFAQNVFHGVE 51 Query: 58 RFLPRIDAVLDFV-LISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 + ID +++ + + R +LR +V ++LY + + ++ AVE AK Sbjct: 52 KHGEEIDGMIEKHCIGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIAKTYG 111 Query: 116 ENRHFA 121 + Sbjct: 112 STEDAS 117 >gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA] gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA] Length = 134 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 +R ++ LL + + +L ++ D L D ++ I+ + ID Sbjct: 6 SREIAMELLFGMTLSKNTLEETIETFIEDYEMN-LKTIDLEYIKGILAKVEENITVIDQK 64 Query: 67 LDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 ++ L + + R +LR+++A++LY DV + ++ A+E K+ + + + Sbjct: 65 IEEALTNWKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELTKKYSDEKSVS 121 >gi|309807523|ref|ZP_07701479.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] gi|308169224|gb|EFO71286.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a] Length = 112 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 36/82 (43%) Query: 321 TIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKV 380 R+ D + + ++ Q+ +L + +K G +V+S C+ ++ E++V + Sbjct: 1 MFRKSDDAIKYWSQEYVLTCQARQQNILNCAVDMLKNNGKLVYSTCTYSPEEDEQIVSWL 60 Query: 381 LRSSPIPVELVPLNSAYWKSID 402 ++ + ++ +P + Sbjct: 61 MKEKKLKIQTIPKSQGISDGHP 82 >gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus DSM 19965] gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus DSM 19965] Length = 136 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +R + +L + + ++ LS + +++N Sbjct: 4 MKRRY-SREYALEVLYANELNPQT------EKINSEIYKKLSDSGKQFAESLINSVRENN 56 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVV--DLAVEQAKRDKE 116 ID ++ + S+ + + +LR+++A++L+L D V + A+E AK Sbjct: 57 EEIDLLIKKHIKKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIEIAKIYGG 116 Query: 117 NRHFA 121 F Sbjct: 117 KNSFK 121 >gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister microaerophilus UPII 345-E] gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister microaerophilus UPII 345-E] Length = 133 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK +R + +L + + ++ LS + +++N Sbjct: 1 MKRRY-SREYALEVLYANELNPQT------EKINSEIYKKLSDSGKQFAESLINSVRENN 53 Query: 61 PRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVV--DLAVEQAKRDKE 116 ID ++ + S+ + + +LR+++A++L+L D V + A+E AK Sbjct: 54 EEIDLLIKKHIKKWSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIEIAKIYGG 113 Query: 117 NRHFA 121 F Sbjct: 114 KNSFK 118 >gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus 16] gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG 20546] gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM 21326] gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus 16] gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG 20546] gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM 21326] Length = 155 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60 + + ++ + + + D R ++ + Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDVAYFRDLLTGVVLSH 77 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119 +D+ + + LLR+++ ++ DV V++ A+E AK Sbjct: 78 TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137 Query: 120 FAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 138 -HKFVNGVLDKAAPH 151 >gi|153818540|ref|ZP_01971207.1| Sun/nucleolar protein family protein [Vibrio cholerae NCTC 8457] gi|126510943|gb|EAZ73537.1| Sun/nucleolar protein family protein [Vibrio cholerae NCTC 8457] Length = 235 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 11/83 (13%) Query: 360 IVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDM 419 +V+S C+L ++++++V + ++ V L + + + ++AL+ EG++ I P M Sbjct: 1 TLVYSTCTLSREENQQVCWHLKQTYGDAVSFESLGNLFEHA---SLALTEEGFLHIFPQM 57 Query: 420 LEKIDGVSSGMDGFFAVALRRLI 442 + GFF +R+L Sbjct: 58 YDCE--------GFFVAKIRKLA 72 >gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23] gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23] Length = 138 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + R + +L + + + + + + +VN Sbjct: 1 MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 56 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 ++D ++ +L S + R +LR+++ +I Y +V ++ A+E K Sbjct: 57 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 116 Query: 117 NRHFA 121 ++ Sbjct: 117 DKSRK 121 >gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273] gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273] Length = 163 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 5/136 (3%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ R L + + + ++ Sbjct: 1 MKTYRRQIREKILQALYTLELRETDIESAAGWLLTPEILE--DPNAMKFFNLLLKSIKDN 58 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 ID + + R + +LR+++A++LY D+ ++ A+E AK+ Sbjct: 59 REEIDRYIAAHTFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAIEIAKKFNST 118 Query: 118 RHFAKLVNSILRRVSR 133 +K VN IL + Sbjct: 119 DKSSKFVNGILDAIFN 134 >gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria meningitidis 8013] gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis N1568] Length = 141 Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + S F + D+ L + T Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 58 AAEYIQQIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo] gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo] Length = 137 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 58/135 (42%), Gaps = 5/135 (3%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQILVRAIVNVTLRFLPRI 63 R+++ + + + ++ + D+ + + + + ++VN T L I Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIENESIKSFYSSLVNGTFNNLEHI 61 Query: 64 DAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYA--VVDLAVEQAKRDKENRHF 120 D+++ + SL R +LR+ V + + + + V+D A+ AK+ +++ Sbjct: 62 DSLIRDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAKKY-GSKNS 120 Query: 121 AKLVNSILRRVSREK 135 K +N IL + + Sbjct: 121 CKFINGILDALLKNM 135 >gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51867] gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51867] Length = 342 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ +L + I + E ++ + R I+ L Sbjct: 12 ARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEPVTAPVRPYTREIIEGVAVNLD 71 Query: 62 RIDAVLDFVL---ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKE 116 ID ++ L + R + +LRV+ ++L+ +V V AVE Sbjct: 72 LIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELV-SQLS 130 Query: 117 NRHFAKLVNSILRRV 131 VN++L + Sbjct: 131 TDDSPAYVNAVLDAM 145 >gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri CF48-3A] gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri CF48-3A] Length = 138 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + R + +L + + + + + + +VN Sbjct: 1 MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 56 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 ++D ++ +L S + R +LR+++ +I Y +V ++ A+E K Sbjct: 57 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 116 Query: 117 NRHFA 121 ++ Sbjct: 117 DKSRK 121 >gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2] gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2] Length = 154 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 7/130 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLPR 62 ++R+ + L L + R+ +V+ +R L Sbjct: 9 RRDSRVAAMQYLFAWSMN---APQNLSEDLRAFYETQEHPREHYAYADEVVDGVIRNLVE 65 Query: 63 IDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHF 120 IDA + + + R +LRV++ ++++ DV ++ A+ +K N Sbjct: 66 IDARIRTLAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAINLSKTY-SNSDA 124 Query: 121 AKLVNSILRR 130 + +N IL R Sbjct: 125 KRFINGILDR 134 >gi|70952464|ref|XP_745398.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525709|emb|CAH78902.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 487 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 76/199 (38%), Gaps = 13/199 (6%) Query: 246 LDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRL---------HLYAEDIIEM 296 +++ + + + +K R ++L+ L + +L+ + + Sbjct: 237 IEINCCLNVLNYYKVNREGCLVVNEFNKARYDRLKQVLHKHLPNDLIKSGNLHITNYNGL 296 Query: 297 DAFDYCPKKLFDAVLVDAPCS-STGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFV 355 + + F +L+D PCS I++ + + + I ++ Q LL+ + Sbjct: 297 QLNSFIRFQKFHKILLDVPCSTDEHLIKKGTNDINKWTFNSIKNNSNIQYDLLVNSFHLL 356 Query: 356 KPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMAL---SPEGW 412 G++++S C+L +++ +++ ++ V+++ ++ + + + E Sbjct: 357 HKNGVIIYSTCALSHHENDYNIERFIKKFKKEVKILDFLEDEYERVYKEKIMNNHTIENG 416 Query: 413 IRITPDMLEKIDGVSSGMD 431 I + S+ D Sbjct: 417 SHIPCHCKMEAPDKSTNHD 435 >gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30] gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10] gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30] gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10] Length = 154 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52 M R ++ L + + + + L+ + + V + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYLDQL 60 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109 V + +D V+ L + R +LR+++ +++Y+D V + ++ A+E Sbjct: 61 VAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIE 120 Query: 110 QAKRDKENRHFA 121 AK +++ Sbjct: 121 LAKTFSDDQSRK 132 >gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 144 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 7/145 (4%) Query: 1 MK--SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLR 58 MK S AR + L + + + + + + + + Sbjct: 1 MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCN---ISYFHELYIGVIS 57 Query: 59 FLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 +D ++ L +L + Y +LR+++ ++ D+ ++ A+E K Sbjct: 58 CAEELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELVK-IFGA 116 Query: 118 RHFAKLVNSILRRVSREKIELLQRI 142 K +N +L +++ + Sbjct: 117 EKSHKFINGVLDKIANQLCVSTNNH 141 >gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2] Length = 148 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 59/145 (40%), Gaps = 15/145 (10%) Query: 1 MKSGMNA-----RLVSSHLLSCVMRKR--ISLTCLLDLEYGDSAFR-LLSQRDQILVRAI 52 MK+G N R + + S + L+ E + + R + I Sbjct: 1 MKAGPNNSRRKMREIVFSAIYQFDFNEDMESSSDYLEQELSFFSMEMEMKLRTRKYFDTI 60 Query: 53 VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQ 110 L+ ID ++ L + + R + + +LR+ +I+Y D+ ++ +++ Sbjct: 61 ----LKNRNEIDEIIRKHLTNWTFERLASTDKNVLRLGAYEIIYEPDIPIEVTLNESIDI 116 Query: 111 AKRDKENRHFAKLVNSILRRVSREK 135 AK+ + K VN +L +++RE Sbjct: 117 AKKYGSEQG-GKFVNGVLDKIAREC 140 >gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8] gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8] Length = 137 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M S + R + L + L L + F LL+ V+ +V Sbjct: 1 MASRHDIRQAAFLLSFEKLFLDEELESLFEGAEELGEFLLLNDD----VKDLVRCVFDKQ 56 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D+++ L R +LR+++ + LY D V + AV ++ Sbjct: 57 EELDSIISKYSDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAVSLTEKYALEP 116 Query: 119 HFA 121 + Sbjct: 117 DVS 119 >gi|316969845|gb|EFV53885.1| NOL1/NOP2/sun family protein [Trichinella spiralis] Length = 456 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 18/239 (7%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQL---IVSGAKVT 267 + G ++D S+ +PV +VLD+CAAPG KT+ + + + K+ Sbjct: 209 DLHDDNLLQTGQLILEDKSSCLPVICLDLEPGTTVLDICAAPGNKTSHMASLMNNKGKII 268 Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF----DAVLVDAPCSSTGTIR 323 ++D K R+ LR L+ + ++IE D + VL+D PCS +G + Sbjct: 269 SVDHHKDRVMTLRMRLESFKVTCCEVIEQDFLKFSDYDPIFENVTHVLLDPPCSGSGVVN 328 Query: 324 RHPDVLWT-RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR 382 R D + + + + Q +L + +S V+S CS+ ++++E VV+++L+ Sbjct: 329 RVDFGDDEAMDENRLKRLSNLQAMMLKKALSQSSVM-RCVYSTCSIHEEENEAVVEEILK 387 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRL 441 + L W + +R +P +GFF +R Sbjct: 388 TFGDQFALEEALPG-WTHRGLDTYEFGSLCVRCSP--------EEDMTNGFFVAVFQRK 437 >gi|325090728|gb|EGC44038.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces capsulatus H88] Length = 556 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 32/166 (19%) Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + + D + K + Q +++ F P Sbjct: 355 QDPHDRGMKRKRPALTPVPTLGRPAASEHQNTTNIDPGRLTKLSNLQTRIVEHAFRF--P 412 Query: 358 GGIVV-FSNCSLDKQDSEEVVQKVLR-------------SSPIPVELVPLNSAYWKSIDM 403 V +S CS+ Q++E V+ +VL+ L + Sbjct: 413 NATRVTYSTCSIHVQENEVVIARVLKSPVAQRRGWRIISRHEQVEGLRKWKYRGITPGES 472 Query: 404 AMALSP---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG +R P+ E GFF R Sbjct: 473 GDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511 >gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP 102891] gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP 102891] Length = 155 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60 + + ++ + + + D R ++ + Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSAPDTDVAYFRDLLTGVVLSH 77 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119 +D+ + + LLR+++ ++ DV V++ A+E AK Sbjct: 78 TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137 Query: 120 FAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 138 -HKFVNGVLDKAAPH 151 >gi|240274384|gb|EER37900.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces capsulatus H143] Length = 556 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 32/166 (19%) Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + + D + K + Q +++ F P Sbjct: 355 QDPHDRGMKRKRPALTPVPTLGRPAASEHQNTTNIDPGRLTKLSNLQTRIVEHAFRF--P 412 Query: 358 GGIVV-FSNCSLDKQDSEEVVQKVLR-------------SSPIPVELVPLNSAYWKSIDM 403 V +S CS+ Q++E V+ +VL+ L + Sbjct: 413 NATRVTYSTCSIHVQENEVVIARVLKSPVAQRRGWRIISRHEQVEGLRKWKYRGITPGES 472 Query: 404 AMALSP---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG +R P+ E GFF R Sbjct: 473 GDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511 >gi|76155377|gb|AAX26657.2| SJCHGC03823 protein [Schistosoma japonicum] Length = 259 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + + Q LL ++F +V+S CS+ +++E VVQ+ L + + Sbjct: 86 KRLSNLQAMLLRHALNFPNVQ-RIVYSTCSIHPEENEAVVQENAIRVSDKFYLETI---W 141 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKID--------GVSSGMDGFFAVALRR 440 +I + + ++ +GFF R Sbjct: 142 PNTIPLNSVDNITATPQVWKHRGLSEYQCESCIRSSQKDLTNGFFVALFVR 192 >gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20] gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20] Length = 154 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52 M R ++ L + + + + L+ + + V + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYLDQL 60 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109 V + +D V+ L + R +LR+++ +++Y+D V + ++ A+E Sbjct: 61 VAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIE 120 Query: 110 QAKRDKENRHFA 121 AK +++ Sbjct: 121 LAKTFSDDQSRK 132 >gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51866] gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium glucuronolyticum ATCC 51866] Length = 342 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR ++ +L + I + E ++ + R I+ L Sbjct: 12 ARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGTEPVTAPVRPYTREIIEGVAVNLD 71 Query: 62 RIDAVLDFVL---ISSLPRKKYSLQQLLRVSVAQILY--LDVADYAVVDLAVEQAKRDKE 116 ID ++ L + R + +LRV+ ++L+ +V V AVE Sbjct: 72 LIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNASNVPQKTAVTQAVELV-SQLS 130 Query: 117 NRHFAKLVNSILRRV 131 VN++L + Sbjct: 131 TDDSPAYVNAVLDAM 145 >gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium nodosum Rt17-B1] gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1] Length = 141 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R + L + + + + + V L ID ++ Sbjct: 9 REMVVKLFFQREFRHNEFEEIFSETLNKIRDNTI----KADFKRYVEGVFHNLSTIDNII 64 Query: 68 -DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVN 125 + ++ S R Y + +LRV +++Y + + ++ +E AK+ + K VN Sbjct: 65 SNHLINWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMIEIAKKY-GSEESGKFVN 123 Query: 126 SILRRVSREK 135 IL R+++E Sbjct: 124 GILDRIAKEH 133 >gi|47215985|emb|CAF96387.1| unnamed protein product [Tetraodon nigroviridis] Length = 348 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 26/238 (10%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSK--------R 274 +++ DA++ +P +VLDLCAAPGGKT L+ + + R Sbjct: 119 YYLMDAASVLPCLALNVQAGHNVLDLCAAPGGKTLALLQTASLGFLCVNDSSVSRTSRLR 178 Query: 275 RLEKLRCNLDRLHLYAEDIIEMDAFDYCP--KKLFDAVLVDAPCSST--GTIRRHPDVLW 330 ++ + L + +D + + +FD VLVD PC++ + ++ Sbjct: 179 KVLRSYVPKQHLTDEKIRVTTLDGTHWGEIERNVFDRVLVDVPCTTDRHSLLEDDNNIFS 238 Query: 331 TRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL----RSSPI 386 T + Q +LLL GI PGG +V+S C+L + VV++ L + I Sbjct: 239 KSRTGERRGLPQLQLQLLLAGIEAACPGGEIVYSTCTLSPHQNASVVEQALHWARENHGI 298 Query: 387 PVELVPLNSAYWKSIDMAMALSPEGWI--RITPDMLEKIDGVSSGMDGFFAVALRRLI 442 +E+V L +P+ + + P + + + +RRL Sbjct: 299 QLEVVDLR-RLTHLFRNTFHFAPDLHLGEMVVPHLAANFGPI-------YMCKMRRLT 348 >gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196] gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196] Length = 120 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 10/122 (8%) Query: 12 SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 L + ++ + + ++V + IDA + Sbjct: 1 MQALYQMDITGELEPKVAVENTLDEGEETN------EFLESLVVGFVDNKEEIDAAIRQN 54 Query: 71 LIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSIL 128 L L R + +LRV+V ++ Y+ ++ ++ A+E AK + + +N +L Sbjct: 55 LKKWKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTF-GDEESRRFINGVL 113 Query: 129 RR 130 Sbjct: 114 SN 115 >gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO] gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium TX1330] gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933] gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502] gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733] gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410] gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12] gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15] gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium DO] gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68] gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6] gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium D344SRF] gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium PC4.1] gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium E1039] gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium E1162] gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium E1071] gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium E980] gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium E1636] gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium E1679] gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium U0317] gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a04] gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium TX0133C] gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium TX0082] gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium TX0133A] gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium TX0133B] gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a01] gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO] gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium TX1330] gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933] gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502] gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733] gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410] gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12] gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15] gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68] gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6] gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium D344SRF] gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium E1071] gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium E1636] gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium E1679] gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium U0317] gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium E1039] gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium E1162] gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium E980] gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium PC4.1] gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a01] gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium TX0133B] gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium TX0133A] gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium TX0133C] gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium TX0133a04] gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium TX0082] Length = 149 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 9/136 (6%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57 S R ++ L + ++ + ++++ + V +V Sbjct: 6 SRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLDTLVGGVC 65 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V++ L ++ + R +LR+++ ++ Y DV ++ A+E AK Sbjct: 66 AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 125 Query: 115 KENRHFAKLVNSILRR 130 ++R VN +L Sbjct: 126 SDDRSRK-FVNGVLSN 140 >gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri SD2112] gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri SD2112] Length = 141 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + R + +L + + + + + + +VN Sbjct: 4 MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPP----YLLTLVNGVREH 59 Query: 60 LPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKE 116 ++D ++ +L S + R +LR+++ +I Y +V ++ A+E K Sbjct: 60 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 119 Query: 117 NRHFA 121 ++ Sbjct: 120 DKSRK 124 >gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985] Length = 157 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 3/122 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 S AR + LL + + L + L + + ++ L Sbjct: 14 SRRKARRRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQLTPYALLLLEGVRDNLDV 73 Query: 63 IDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D + L L R + +LR++V ++L+ +V VD A+E AK + Sbjct: 74 VDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVDEALELAKELSTDDS 133 Query: 120 FA 121 + Sbjct: 134 PS 135 >gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9] gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9] Length = 213 Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67 + +L + + L L L+ +D + + IV +D ++ Sbjct: 83 ARTMLQEAIGCTQTAINQLGLAVDFPELIQLANQDKEVRNYAKEIVVTVDENRTILDQII 142 Query: 68 DFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L + R + +L+++VA++ +++V ++ AVE AKR + + +N Sbjct: 143 SQALVDWQVTRLAQIDRDILQIAVAEMKFMEVPPSIAINEAVELAKRYSGDDG-HRFING 201 Query: 127 ILRRVSREKIE 137 +LRRV+ +K Sbjct: 202 VLRRVTEQKQP 212 >gi|170077553|ref|YP_001734191.1| transcription antitermination protein NusB [Synechococcus sp. PCC 7002] gi|254772663|sp|B1XIZ3|NUSB_SYNP2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|169885222|gb|ACA98935.1| transcription antitermination factor NusB [Synechococcus sp. PCC 7002] Length = 213 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 16/131 (12%) Query: 7 ARLVSSHLLSCVMRKRISLTCL-----LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL- 60 AR +++ L R ++ L L + + + I+ TLR Sbjct: 80 ARTMAADAL---ELTRAAINRLGHVVELPEFLQLTRQHEV----RNFALEIL-TTLRRRN 131 Query: 61 PRIDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +I V+D ++ R + +LR++VA+IL+L+ ++ AVE AKR + Sbjct: 132 DQIKEVIDGSLVDWQYHRLPRLDRDILRIAVAEILFLETPYKVAINEAVELAKRY-SDED 190 Query: 120 FAKLVNSILRR 130 + +N +LRR Sbjct: 191 GHRFINGVLRR 201 >gi|296196674|ref|XP_002806711.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN7-like [Callithrix jacchus] Length = 771 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 70/469 (14%), Positives = 134/469 (28%), Gaps = 57/469 (12%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + L D + L + L++ ++A+L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFRRLSYELAFSALKYQDILEAILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L Q L V E +E + L Sbjct: 113 IFPSTTIPDHLSQFLLWXCYD-FQDRKFQTRVPSDNEESISEVREVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTV----KFDIE 187 ++ I+PE +++ I+ ISP + + ++ Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYHKVK 231 Query: 188 TWAHKLNAVMLPTGGIR-----LKELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNN 242 + H + V L ++++ F + QD S S+ V L N Sbjct: 232 SVLHIDDKVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKALLN 291 Query: 243 LSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRLHLY 289 + L G + G + A D + L ++ Sbjct: 292 MDDDILMVNTGSWYTVAHMSVLTNNNTSKVFVCGVQSQAKDPDLKTL------FTKMGCK 345 Query: 290 AEDIIEMDAFDYCPK----KLFDAVLVDAPCS--------------STGTIRRHPDVLWT 331 +I+ + K + +L+ CS T Sbjct: 346 NIEILHELFINIESKDHRLQKIKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHSQGG 405 Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELV 391 D + A Q + L + F K VV+ CS+ +++E VV+K L + ++ Sbjct: 406 ISEDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVYPEENEAVVKKALEFQDLGNKVQ 464 Query: 392 PLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 P + L I+++ D +++ +G F L R Sbjct: 465 PYRLSPPVLP-----LCSLKEIQLSTDKFFRMEPSEI-TNGCFISILTR 507 >gi|261191660|ref|XP_002622238.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis SLH14081] gi|239590004|gb|EEQ72647.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis SLH14081] Length = 555 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 32/179 (17%) Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 R + + + KK+ L PC+ + D D ++K + Q Sbjct: 343 RDDIPRLALPSSHNPNPRSKKMKRTALAPVPCTHADPAADEEEPTPAIDHDRLIKLSNLQ 402 Query: 345 RKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLR--------------------- 382 +++ SF P V +S CS+ Q++E VV + L+ Sbjct: 403 TRIIEHAFSF--PAARRVTYSTCSIHAQENEVVVSRALKSPVAQRRGWRILSRSEQVEGL 460 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P S + + + E +R P+ G GFF R Sbjct: 461 RNWKYRGIKPEKPGDGASESLDLTGTELEACLRCWPND-------EEGTGGFFVAGFVR 512 >gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510] gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510] Length = 196 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 8/122 (6%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLSQ-----RDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + + ++ + D L IV + +D VL Sbjct: 53 YQIDLAQAPVENVVGEFVAHRLGEEIDGDKFVAGDPQLFADIVRGAIHRRAEVDGVLGAA 112 Query: 71 LIS--SLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L R + L+ +LR +I ++LD ++ V+ A+ R A + + Sbjct: 113 LDPRFPLDRLELLLRAILRAGAYEIAVHLDTHPRILISEYVDVARAFFSGREPAMVNGVL 172 Query: 128 LR 129 Sbjct: 173 DH 174 >gi|46199062|ref|YP_004729.1| N utilization substance protein B-like protein [Thermus thermophilus HB27] gi|55981090|ref|YP_144387.1| N-utilization substance protein B [Thermus thermophilus HB8] gi|81567694|sp|Q72JL6|NUSB_THET2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|81600431|sp|Q5SJ93|NUSB_THET8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|46196686|gb|AAS81102.1| N utilization substance protein B-like protein [Thermus thermophilus HB27] gi|55772503|dbj|BAD70944.1| N-utilization substance protein B [Thermus thermophilus HB8] Length = 151 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 10/141 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAF------RLLSQRDQILVRAIVN 54 M+ AR ++ L + L + L Q R +++ Sbjct: 1 MRRR--ARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAEPLDQEGVAFARRLLS 58 Query: 55 VTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 +D VL+ + + + +LR++V ++LY ++++AV+ A R Sbjct: 59 GYKAHQEEVDRVLEETVEGWDFRQMAKTDLAVLRLAVYEMLYEPTPFEPLIEVAVKIANR 118 Query: 114 DKENRHFAKLVNSILRRVSRE 134 H VN +L RV R Sbjct: 119 Y-GGEHSGSFVNGVLARVYRR 138 >gi|170577368|ref|XP_001893977.1| RIKEN cDNA 2810405F18 [Brugia malayi] gi|158599664|gb|EDP37186.1| RIKEN cDNA 2810405F18, putative [Brugia malayi] Length = 416 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 13/169 (7%) Query: 223 WWVQDASASIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKV--TALDVSKRRLEKLR 280 WW+ D + PV G +VLD+CAAPGGK+ ++ +G T D + RL +L Sbjct: 235 WWLLDGGSLAPVLALGLTEESNVLDMCAAPGGKSLLIVQTGLMTNLTCNDNKQSRLGQLH 294 Query: 281 CNLDRLHLYAEDIIEMDA---------FDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWT 331 L + D+ + +D VLVDAPC+S D Sbjct: 295 RALGQYIPVNSDVANRIILKRKDASVLDYWDECNTYDRVLVDAPCTSDRLSVNRDDGNLY 354 Query: 332 RDTDDIVKS--ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQ 378 + Q ++L+ + V+ GG VV+S C+L +E VV+ Sbjct: 355 STQLTEQRLNLPEVQTRMLVNALRSVQVGGYVVYSTCALSPVQNEGVVE 403 >gi|189217516|ref|NP_001121225.1| NOP2/Sun domain family, member 7 [Xenopus laevis] gi|169642140|gb|AAI60727.1| LOC100158297 protein [Xenopus laevis] Length = 688 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 55/463 (11%), Positives = 127/463 (27%), Gaps = 60/463 (12%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL---DFVLISSL 75 + ++ DS L S +D Q + TL++ ++ +L F L Sbjct: 43 KKPPDRIVVKYGNDSGRPLSSFKDEKSQRWAYELAFNTLKYQDLLETILLDSGFYHSQPL 102 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 P + L+ V + + E + +E + L Sbjct: 103 PD---EMTSLVMVMLYD-FQDKKFQPRCLSRTEETIEEVQEVEQLLCGSKTRLSAALARS 158 Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 + I+PE +++ L ++ E + + Sbjct: 159 RIKHAIPSIEFILPESVRKQ--EERSSTVPLYAWVNTTKTSVTEVCDALKSEGFTKADSP 216 Query: 196 VMLPTGGIRLKELPESIVSLPGF------------------AEGVWWVQDASASIPVQLF 237 V L + + ++ P + + + + S + Sbjct: 217 VDLIGYKYCTDKHCQDVLVFPPYLKDKLNNLELFMHYKLVLQDKAYILSVHSVRAVMNTD 276 Query: 238 GTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-- 295 + + + S+ R L+ L + +++ Sbjct: 277 DDIIVATPCSGYILAHMSVLTNQNACRIFVCGMESEAREGALQEVLVDMGCKNVKLLKES 336 Query: 296 -MDAFDYCPKKLFDAVLVDAPCS---------------STGTIRRHPDVLWTRDTDDIVK 339 D P+ ++ P S T + TD + Sbjct: 337 FTDLDPSDPRLQKAKTILLLPQSSGSGVGDPVQFVLNQHGDTSLLQDFSQGSVRTDKLNA 396 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP--VELVPLNSAY 397 + Q L ++F K +V+ CS+ +++E+V+ + L P ++ + S Sbjct: 397 LSKQQVTELNHAMTFNKVQA-LVYCTCSVYHEENEDVINQALGQKPESNTIQTYRIGSPV 455 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + +I++ P +GFF L++ Sbjct: 456 IALPSSEFTSASDKFIKVHPSET---------TNGFFLAVLKK 489 >gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704] gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704] Length = 132 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK R +L V + L+L +G ++D +R V Sbjct: 1 MK-RTEQREHIFKMLFGVEFNAGGDMPEQLELYFG--QLEGAGEKDLDYIREKVQKIASK 57 Query: 60 LPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 + IDA+++ R +LR++V ++ + DV +D AVE AK+ Sbjct: 58 VEEIDALINEHTTRWKTSRMNKVDLTILRLAVYEMRWDEDVPTGVAIDEAVELAKKYSSE 117 Query: 118 RHFA 121 + Sbjct: 118 DGPS 121 >gi|224049974|ref|XP_002188945.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 730 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 56/412 (13%), Positives = 129/412 (31%), Gaps = 44/412 (10%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67 ++ + +R S +L +S +++ +D + + + L++ ++ +L Sbjct: 55 AAKI-FQGIRTEKSTGRILVHYGNNSESPMVAFKDEHSRRVSYELAFNALKYQSLLEEIL 113 Query: 68 DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 + L LL V + + + D A+ + + + + Sbjct: 114 LDSKVYPCNSIPDELTSLLVVMLYDLQDRKFQKRKIFDEEELVAEVQEIGHYLYRYKTKL 173 Query: 128 LRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIE 187 ++R ++ +PE ++ + D+ +++ Sbjct: 174 AAALAR-CRIKYDALSIEYFVPETLSKQ--EQRTSALPVCFWINTFKISLEDVIRDLEMK 230 Query: 188 TWAHKLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQL 236 + + + + ++ +L FA+ +QD S S+ V Sbjct: 231 GFTKVESVSDFDHYTYAVDQHCHDVLVFPSSLREELLNLDLFADCRLLLQDKSRSLAVHS 290 Query: 237 FGTLNNLSVLDLCAAPGGKTAQLIVS-------GAKVTALDVSKRRLEKLRCNLDRLHLY 289 + + A G +S S + E+LR +L + Sbjct: 291 AQAMLGEGGDIIMAHIGSHLTIAHMSVLTNDSSSRIFVCGVKSLAKEEELRNSLSHMGCK 350 Query: 290 AEDIIEMDAFDYCPKK----LFDAVLVDAPCSSTG---------TIRRHPDVLWTR---- 332 ++ D + +L+ CS G + R +L Sbjct: 351 NIWLLHEDFTELQSTDSRLEKAKVILLLPECSELGAGNPMELILSEHRDAGLLQDLLQGF 410 Query: 333 -DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRS 383 D + A Q L+ + F K G +V+ CS+ +++E VV+K L S Sbjct: 411 VSEDKLSILAERQLNELIHALKFKKVQG-IVYCTCSVYPEENELVVKKALES 461 Score = 57.2 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%) Query: 333 DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + A Q L+ + F K G +V+ CS+ +++E VV+K L S ++ P Sbjct: 481 SEDKLSILAERQLNELIHALKFKKVQG-IVYCTCSVYPEENELVVKKALESGVEGDKVRP 539 Query: 393 LNS-AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 S S E + ++ P + F L R Sbjct: 540 YRLIPSVFSTCSDSESSTEMFFKMEPSEISSGC---------FLAVLER 579 >gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp. 17-4] gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp. 17-4] Length = 147 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 13/131 (9%) Query: 1 MK-SGMNARLVSSHLLSCV-----MRKRISLTCLL--DLEYGDSAFRLLSQRDQILVRAI 52 M + + R + L + + K ++ L + E D +L + + Sbjct: 1 MSLTRRDIREKALQSLFQLSANEELSKEEAMQQALTSEAELADEVETVLVP---SYLDLL 57 Query: 53 VNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQ 110 V+ L ID + L + SL R + ++R+++ +++Y DV D ++ A+E Sbjct: 58 VSGVLEKQDEIDEKIKAHLENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEALEI 117 Query: 111 AKRDKENRHFA 121 K+ + + Sbjct: 118 TKKYSDEKSRK 128 >gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC BAA-450] gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC BAA-450] Length = 155 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60 + + ++ + + + D R ++ + Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALVAPDTDVAYFRDLLTGVVLSH 77 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119 +D+ + + LLR+++ ++ DV V++ A+E AK Sbjct: 78 TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137 Query: 120 FAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 138 -HKFVNGVLDKAAPH 151 >gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum IFO 3956] gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956] Length = 139 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 11/127 (8%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ--ILVRAIVNVTL 57 M R V+ L ++ +D E L+ +++ + +V Sbjct: 1 MTFKRRRIREVAFQTLFAMV-----SDPEVDREQLYKELLPLAPQEEVPAYLEELVTGVS 55 Query: 58 RFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 D ++ L SL R + +LR+++ ++ Y DV +D A+E K+ Sbjct: 56 EHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEALEMTKKF 115 Query: 115 KENRHFA 121 +++ Sbjct: 116 SDDKSRK 122 >gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus ATCC BAA-2122] Length = 155 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 42/135 (31%), Gaps = 13/135 (9%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLS-----------QRDQILVRAIVNVTLRFL 60 + + ++ + + + D R ++ + Sbjct: 18 LQAIYSWQITKENVANIEEQFLSGDKYDEEEHHAQEPALSTPDTDVAYFRDLLTGVVLSH 77 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRH 119 +D+ + + LLR+++ ++ DV V++ A+E AK Sbjct: 78 TELDSKIRPYTARPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEES 137 Query: 120 FAKLVNSILRRVSRE 134 K VN +L + + Sbjct: 138 -HKFVNGVLDKAAPH 151 >gi|296803510|ref|XP_002842608.1| NOL1/NOP2/Sun domain family protein [Arthroderma otae CBS 113480] gi|238838927|gb|EEQ28589.1| NOL1/NOP2/Sun domain family protein [Arthroderma otae CBS 113480] Length = 538 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 57/309 (18%), Positives = 92/309 (29%), Gaps = 88/309 (28%) Query: 211 SIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSV----LDLCAAPGGKTAQ-------- 258 I S + EG +QD ++ P L + +D CAAPG KT Sbjct: 211 DITSTLSYKEGRLILQDKASCFPAYLLLGDHPGRWEGDLVDGCAAPGNKTTHLASLLSSS 270 Query: 259 LIVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDA-------VL 311 + ++V +LD S R + L+ + + + E + + D+ D +L Sbjct: 271 RVPQRSRVFSLDASPSRSKILQEMVKKAGVG-ERVTVLPGQDFLALDPEDRRFRQVTGLL 329 Query: 312 VDAPCSSTGTIRRHP----------------------DVLWTRDTDDI------------ 337 +D CS +G +R + Sbjct: 330 LDPSCSGSGITKREDVPQLILPKSKSELGSTRSSKGSKNRKRKRESPPAPSSAASPPDGA 389 Query: 338 ------VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVL---RSSPIPV 388 K A Q +++ F V +S CS+ ++++E VV +VL + Sbjct: 390 DESARLAKLANLQSQIVEHAFGFPAAT-RVTYSTCSIHQEENEGVVARVLASSAARRRGW 448 Query: 389 ELVP-----------------LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMD 431 L P + S A E IR P G Sbjct: 449 RLEPRTEQAKGLQKWHHRGMQSPPSASDSGPSLSAEEAEACIRCWP-------TGDEGTG 501 Query: 432 GFFAVALRR 440 GFF R Sbjct: 502 GFFVAIFVR 510 >gi|254414272|ref|ZP_05028039.1| transcription antitermination factor NusB, putative [Microcoleus chthonoplastes PCC 7420] gi|196178947|gb|EDX73944.1| transcription antitermination factor NusB, putative [Microcoleus chthonoplastes PCC 7420] Length = 213 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + I+ R ID +L + + R + +LR++VA++ +L + D + Sbjct: 113 RAYAIEILQAIRRRQVEIDEILVKSLKDWQINRLPRIDRDILRIAVAEMAFLGIPDRVAI 172 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 + A+E AKR ++ + VN +LRRV+ Sbjct: 173 NEAIELAKRY-SDQEGHRFVNGVLRRVTTCIN 203 >gi|12843991|dbj|BAB26195.1| unnamed protein product [Mus musculus] gi|123253901|emb|CAM22670.1| NOL1/NOP2/Sun domain family, member 4 [Mus musculus] Length = 234 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 22/189 (11%) Query: 268 ALDVSKRRLEKLRCNLDRLHLYAEDIIEMDAFDYCPKKLF--------DAVLVDAPCSST 319 A D+S R +L+ L + + D VLVD PC++ Sbjct: 52 ANDLSTSRTGRLQKVLHSYVPQDIREGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTD 111 Query: 320 --GTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVV 377 ++ + Q +LL G+ KPGG VV+S CSL +E VV Sbjct: 112 RHSLHEEENNIFQRSRKKERQMLPMLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV 171 Query: 378 QKVLR----SSPIPVELVPLNSAYWKSID-MAMALSPEGWIRITPDMLEKIDGVSSGMDG 432 Q + I V++ L+ +D S + + P+++ Sbjct: 172 QGAIELLANQYNIKVQVEDLSHFRKLFMDTFCFFPSCQVGELVIPNLMVNFGP------- 224 Query: 433 FFAVALRRL 441 + L RL Sbjct: 225 MYFCKLHRL 233 >gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium resistens DSM 45100] Length = 204 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 4/123 (3%) Query: 3 SGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 S AR + ++ + + + + + IV T L Sbjct: 13 SRFKARRRAVDIIFEAEFRDLDPVKIVEERVELAKDPANAVKPVPEYTATIVEGTATNLD 72 Query: 62 RIDAVL--DFVLISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 ID + + L R + +LRV+ ++L+ D V + + +E A + ++ Sbjct: 73 AIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVPNQVAMTEGIELAAQYSHDK 132 Query: 119 HFA 121 A Sbjct: 133 APA 135 >gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella paramesenteroides ATCC 33313] gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella paramesenteroides ATCC 33313] Length = 139 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 4/131 (3%) Query: 3 SGMNARLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + R + L + + + + + ++V + Sbjct: 5 NRHQIRQAAFQSLFGLALNPTADVDTTITQVLVGDPEIAWEDEIPADLTSVVLGVVAKQD 64 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D ++ L +L R + L+R+++ + + DV V+ A++ A +++ Sbjct: 65 ELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKFTDVPAKIAVNEALQLAHDFTDDKS 124 Query: 120 FAKLVNSILRR 130 +N IL + Sbjct: 125 RK-FINGILNK 134 >gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 221 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R +ID L + L R Q +LR+++A++ YL V + Sbjct: 120 RKFALELIGTVCRRRQQIDEQLQEAMVDWQLSRLAKIDQDILRLAIAELDYLGVPQKVAI 179 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130 + AVE AKR + + +N +LRR Sbjct: 180 NEAVELAKRYSG-QDGHRFINGVLRR 204 >gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC 12755] gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC 12755] Length = 154 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILV----RAI 52 M R ++ L + + + + L+ + + V + Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNKDLTKQDAIMHAIELEHHELIDEEQEHFVPVYLDQL 60 Query: 53 VNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109 V + +D V+ L + R +LR+++ +++Y+D V + ++ A+E Sbjct: 61 VAGVCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNEAIE 120 Query: 110 QAKRDKENRHFA 121 AK +++ Sbjct: 121 LAKTFSDDQSRK 132 >gi|70947828|ref|XP_743492.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56523015|emb|CAH87948.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 247 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%) Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNS 395 I + FQ+ +L + +K ++S CS ++++E+V++ VL + Sbjct: 152 KIKNLSTFQKDILNHALITIKTAKTFIYSTCSFFEEENEQVIKNVLEKNLDFYIENAGTD 211 Query: 396 AYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVAL-RR 440 + + +R P+ G F + R+ Sbjct: 212 KFL--FKNGKYEFSDKCVRTFPN--------RDNCRGIFICKMCRK 247 >gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter xylosoxidans A8] gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter xylosoxidans A8] Length = 164 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 2/112 (1%) Query: 12 SHLLSCVM-RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 + + R +++ S+ D + +++ LR P + Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAHLRDTEDFSEADAQWFKTLLHGVLREAPALRQRFTPY 91 Query: 71 LISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + L +L + ++++ +V ++ AVE AK F Sbjct: 92 VDRPLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGFK 143 >gi|126735761|ref|ZP_01751506.1| Fmu (Sun) [Roseobacter sp. CCS2] gi|126714948|gb|EBA11814.1| Fmu (Sun) [Roseobacter sp. CCS2] Length = 269 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 81/295 (27%), Gaps = 44/295 (14%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M G AR+ ++ + ++ L +S F +D+ VR V LR Sbjct: 1 MTPG--ARVAAAIAVLDHVQNGAVAEQALTAWARNSRFAG--SKDRAAVRDHVFDVLRAK 56 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 + L+ L ++ + L + Sbjct: 57 RSLADGAGRDLMQRLAMREGWDIETL-----------------------FSGEGHAPAPL 93 Query: 121 AKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDL 180 N+ L A +PEW R G ++ A + A + L Sbjct: 94 NGDENAALDAPLSL------SDAARCDVPEWLWPRWRQALG-DQAEATAMAQQQRADVFL 146 Query: 181 TVKFDIETWAHKLN----------AVMLPTGGIRLKELPESIVSLPGFAEGVWWVQDASA 230 V T + G +R+ + P I + + G +QDA++ Sbjct: 147 RVNRRKATVNQAVKLLADDDISTAVHPTVEGCLRVTKNPRRIKTSAAYLTGFVELQDAAS 206 Query: 231 SIPVQLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRLEKLRCNLDR 285 V +LD CA GGK + + ++ R Sbjct: 207 QEAVGDTPVNAGARILDYCAGGGGKALAFADQYDATVLPMILRHNACEICQRAHR 261 >gi|325283641|ref|YP_004256182.1| NusB antitermination factor [Deinococcus proteolyticus MRP] gi|324315450|gb|ADY26565.1| NusB antitermination factor [Deinococcus proteolyticus MRP] Length = 185 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 6/123 (4%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYG-----DSAFRLLSQRDQILVRAIVNVTL 57 S AR + L R + L + D L+ R++ Sbjct: 14 SRRAAREFAFRALFESERGELPLEQVFMRTAAQMHEGDETLTPLTPDAIAFARSLAEGLD 73 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKE 116 + A L + S + + +LR++ ++++ V++ AV A++ Sbjct: 74 MHWDEVQAALQRTIRGWSFEQMAQTDLNVLRLAAFEMMFTPEPHPPVIESAVRIARKFGG 133 Query: 117 NRH 119 Sbjct: 134 EDS 136 >gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638] gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 8 RLVSSHLLSCVM----RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R+++ +L + + + + + R + + R ++ + Sbjct: 14 RVLAFQVLYGLSFVPPHGGWTTERIYNQ--SPAVIRETEEDLILFARELLIGIWNAQEEL 71 Query: 64 DAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 D V+ + R +LR++V ++++ D+ ++ +E AK+ + + Sbjct: 72 DEVIGRYSKHWKIERIAKVELAILRLAVYELVHKPDIPLKVGINEGIELAKKF-GDGNSR 130 Query: 122 KLVNSILR 129 +N IL Sbjct: 131 NFINGILD 138 >gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21] gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21] Length = 150 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD-----QILVRAIVNVT 56 +S ARL + L + + LL+ + +++ + +V Sbjct: 8 QSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLGKVIEDEEYADADVDFFDDLVKGV 67 Query: 57 LRFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKR 113 ID +L L S L R ++ Q+LR +++ DV A + V+ AK Sbjct: 68 DARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKDVPKAAAISEYVDVAKA 127 Query: 114 DKENRHFA 121 ++R Sbjct: 128 FFDDREAK 135 >gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae MTU5] gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5] Length = 156 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 14/142 (9%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L +++ L + + + +V Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 + ++D ++D L L+ LLRVS+ ++L+ V++ + A Sbjct: 72 FENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131 Query: 114 DKENRHFAKLVNSILRRVSREK 135 N H VNS+L ++++E Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152 >gi|329946651|ref|ZP_08294063.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 170 str. F0386] gi|328526462|gb|EGF53475.1| transcription antitermination factor NusB [Actinomyces sp. oral taxon 170 str. F0386] Length = 163 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVNVTL 57 + AR + +L ++ + ++ + + R +S + R I++ Sbjct: 21 TARTKARRRAIEILFEADQRGMLISGDAEELRSFAQLRAVSSANHTEAPAYTREILDGVC 80 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDK 115 L +D + +L R + + RV+ +I+Y DV VD A+ ++ Sbjct: 81 DHLADVDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVAVDEAMTLSRMLS 140 Query: 116 ENRH 119 + Sbjct: 141 TDES 144 >gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301] gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301] Length = 175 Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 48/130 (36%), Gaps = 5/130 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ +R + + M + +T + D + + D+ + ++ Sbjct: 35 QNRRKSRELVLKAVYRGMLNQSEMTAVYRDMAEDPDYA---KADEAYFKQLLEAVGEHAT 91 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D + + + +L++S ++++ + + V++ VE AK Sbjct: 92 ELDEKMAAFIDRQVSELSPIEHAILQISGCELMFDMSIPYRVVINEGVELAKIYGGIDG- 150 Query: 121 AKLVNSILRR 130 K +N +L + Sbjct: 151 HKYINGVLDK 160 >gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp. 128-5-R1-1] Length = 144 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 5/137 (3%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ AR S +L + S+ + + + + R+ + +++ L Sbjct: 1 MRFRKKARENSLMVLYRWDIRGDSIDRIREEYVEEKGIKNREIRE--YMDKLLSTVRDKL 58 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADY-AVVDLAVEQAKRDKENR 118 P ID+++ S R Y + +LR+ VA++LY D D + ++ KR +R Sbjct: 59 PEIDSLISEYSEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVKRY-ADR 117 Query: 119 HFAKLVNSILRRVSREK 135 A+ VN IL ++ +E Sbjct: 118 KAARFVNGILSKIYKEH 134 >gi|223999623|ref|XP_002289484.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220974692|gb|EED93021.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 612 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 70/471 (14%), Positives = 136/471 (28%), Gaps = 94/471 (19%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFV---LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 A V T++ LP I+++L+ L ++ + + LL V + ++L+ Y + Sbjct: 44 AAYATVCKTMQHLPAINSILNENNGKLHKAIGIDDVNSKGLLYVMIYELLFGK---YKSI 100 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + ++ + ++ + ++ + P + + E Sbjct: 101 RGGGRLKRMIIKHENALRIE--ADQYAAKNGGVGAGVDEDGANFPRYVRVNTLRSTVAEM 158 Query: 165 VLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESI--VSLPGFAEGV 222 V ++ K + A + + S+ G Sbjct: 159 VDVLTKDLEDANGAKEGGKSTPTDLKQTIYADAHVPDLLVMHPFTSSLLHQKHEAVKSGK 218 Query: 223 WWVQDASASIPV------QLFGTLNNLSVLDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276 +QD S+ L + V+D C+APG KT L +R Sbjct: 219 VVLQDKSSCFSALVLARGNSNKPLTSCDVIDACSAPGNKTCHLATLINDSIGATTDERPS 278 Query: 277 EK-----------------------LRCNLDRLHLY--------------AEDIIEMDAF 299 ++ R+ L+ A D Sbjct: 279 KRKKKGKNDAKPMSTIFAFERSSTRFSLLQSRMQLFIPPVGDSNGISTQVAVVPTHADFL 338 Query: 300 DYCPKKLF----DAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS---------ACFQRK 346 P A+L+D CS +G + + W D++D +S A FQ Sbjct: 339 KADPNDTQLANVRAILLDPSCSGSGIV--NNPDRWMEDSNDTNESEKKRRIQSLANFQLV 396 Query: 347 LLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMA 406 L +SF K VV+S CS++ +++E V+ K L + + + Sbjct: 397 ALKHAMSFPKVD-RVVYSTCSINNEENEVVIGKALSETNNSDDNADDGDEWVLVAPD--- 452 Query: 407 LSPEGWIRITP-----------------DMLEKIDGVSSGMDGFFAVALRR 440 + P ++ +GFF R Sbjct: 453 -----CLEHWPRRGNGGGVGGLSESQAKCLIRCDGLGGDETNGFFVSYFER 498 >gi|327356906|gb|EGE85763.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis ATCC 18188] Length = 555 Score = 67.6 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 32/179 (17%) Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 R + + + K+ L PC+ + D D ++K + Q Sbjct: 343 RDDIPRLALPSSHNPNPRSNKMKRTALAPVPCTHADPAADEEEPTPAIDHDRLIKLSNLQ 402 Query: 345 RKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLR--------------------- 382 +++ SF P V +S CS+ Q++E VV + L+ Sbjct: 403 TRIIEHAFSF--PAARRVTYSTCSIHAQENEVVVSRALKSPVAQRRGWRILSRSEQVEGL 460 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + P S + + + E +R P+ G GFF R Sbjct: 461 RNWKYRGIKPEKPGDGASESLDLTGTELEACLRCWPND-------EEGTGGFFVAGFVR 512 >gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7] gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7] Length = 137 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 6/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M R + L + L + + F + V+A+V Sbjct: 1 MAGRREVRQAAFLLSFEKLFMDDELENIFNSAQELGEFISVDDE----VKALVRGIFEKQ 56 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 +D+++ + R +LR+++ + LY D V + AV ++ Sbjct: 57 DELDSIISKYSDKRAVSRIPKVDLSVLRLAIYEALYDDKVPVNVAISEAVSLTEKYALEP 116 Query: 119 HFA 121 A Sbjct: 117 DIA 119 >gi|209875695|ref|XP_002139290.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66] gi|209554896|gb|EEA04941.1| NOL1/NOP2/sun family protein [Cryptosporidium muris RN66] Length = 439 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 30/224 (13%) Query: 190 AHKLNAVMLPTGGIRLKELPES--IVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLD 247 L + E+ I S E + D ++ + L N S+LD Sbjct: 59 IKDLTYKSWCFPNTFIITKEENELINSTRIIQEEQVYFMDGASILVSYLLDLDNQSSILD 118 Query: 248 LCAAPGGK---------------TAQLIVSGAKVTALDVSKRRLEKLRCNLDRLHLYA-- 290 CAAPGGK T + + + + RL++L+ L++ Sbjct: 119 TCAAPGGKSLIFSFRISRLLQLNTCTTDKNNVLLVCNEYNYTRLQRLKTILNKYLGKNLM 178 Query: 291 ----EDIIEMDAFDYC------PKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKS 340 ++I DA D K+ F+ +L+DAPC+S + + + + KS Sbjct: 179 NELKIELIRSDASDISLLKALKKKRTFNRILLDAPCTSDRHLLLNKSIQ-NWSLGTVKKS 237 Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 A Q ++L ++ GG++++ C+L ++++V+ K + Sbjct: 238 AKKQLEILSNIYPLLEKGGMLLYCTCALSLIENDDVISKFCKKF 281 >gi|226323831|ref|ZP_03799349.1| hypothetical protein COPCOM_01606 [Coprococcus comes ATCC 27758] gi|225208015|gb|EEG90369.1| hypothetical protein COPCOM_01606 [Coprococcus comes ATCC 27758] Length = 77 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 1 MKS---GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 M + G+ R ++ +L + + +L ++ LS++D+ + + T Sbjct: 1 MTTNNQGVGTRELALMILLEIE-RGEKSHIVLRQVLE--KYQYLSKQDRAFLTRLAEGTT 57 Query: 58 RFLPRIDAVLDFVLISSLPR 77 +D +++ + Sbjct: 58 ERRIELDYIINQFSKVKTEK 77 >gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str. Hartford] gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str. Hartford] Length = 156 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 13/118 (11%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L DS+ L+ + + +V Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLSISHFKILVKSV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111 + ++D ++D L L+ LLR + ++L+ V++ + A Sbjct: 72 FENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKVVINEYTDIA 129 >gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748] gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748] Length = 134 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + +L + + + D+ +I+N L Sbjct: 5 RNRREARQYAFQMLYANEFH------VDQNDVQFPEGHMHKSMDKAYANSIINGVLSASE 58 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENR 118 IDA L + + +LR+++ ++ ++ A++ AK + Sbjct: 59 TIDATLQPFCKSRKVENLDKVDRAILRIALWEMTNEADPLEPSIAINEAIQLAKDFGSDS 118 Query: 119 HFA 121 + Sbjct: 119 SYK 121 >gi|303274771|ref|XP_003056700.1| predicted protein [Micromonas pusilla CCMP1545] gi|226461052|gb|EEH58345.1| predicted protein [Micromonas pusilla CCMP1545] Length = 734 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 12/113 (10%) Query: 334 TDDIVKSACFQRKLLLQGISFVK-PGGIVVFSNCSLDKQDSEEVVQKVLRS--------- 383 QR++L + V GG +V++ CSL ++ V + R+ Sbjct: 611 PVSDASWPALQRRVLARFAGCVAADGGALVYATCSLLDAENVGVSRWFERAKWTTGAGEG 670 Query: 384 SPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAV 436 + E V + + R T + + G DGF+ Sbjct: 671 ADASGEDVDFVTFEPDPFPRGWPGEEDADARAT--HEVALRPDAHGCDGFYIA 721 >gi|225165824|ref|ZP_03727605.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] gi|224799937|gb|EEG18385.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2] Length = 201 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 71/190 (37%), Gaps = 17/190 (8%) Query: 9 LVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 L ++ LL + +R + LL + L + + + +V LR L RI+ ++ Sbjct: 19 LAAARLLVRWLDERARVDGLLAVL-----PANLGRTGRARCQNLVLGALRHLGRIEGIIT 73 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQIL------YLDVADYAVVDLAVEQ---AKRDKENRH 119 ++ +Q + ++ +++ ++ + V+ A+ N Sbjct: 74 PLMSRMPR---AEVQAVFLLAGYELIEGGGDGHVAKVAHHAVEQTKRLASQAEARMVNAI 130 Query: 120 FAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYID 179 KL +++ ++ R+A P W ER +G E A+ + + P + Sbjct: 131 VRKLASALADEQPPGRLATAARLAQYYSHPAWMVERWLAQFGAESTRALLEWNLRPASVY 190 Query: 180 LTVKFDIETW 189 +++ + Sbjct: 191 ARLRYTPPSL 200 >gi|331245525|ref|XP_003335399.1| nucleus protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314389|gb|EFP90980.1| nucleus protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 551 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 53/359 (14%) Query: 101 YAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFY 160 V + A + + S + + + WF + Sbjct: 160 RQAVSRVSDLADSFQRGTDSVDEDSGGTNLNSPRWMRVNTIKWSVDQAKGWFIDAGWTQV 219 Query: 161 GKERVLAISDACISPLYIDLTVKFDIETWAHKLNAVMLPTGGIRLKELPESIVSLPGFAE 220 L + + + +AV+ + L + + Sbjct: 220 SSLEALPNQTSDSPDQLLVFAEDEHVAGLLALPSAVV--------------LAKLAPYVD 265 Query: 221 GVWWVQDASASIPVQLFGTLNNLSV----LDLCAAPGGKTAQLIVSGAKVTALDVSKRRL 276 G QD ++ +P QL + + +D AAPG KT Sbjct: 266 GRLIAQDKASCMPAQLLLGDHPHNPPIEVIDATAAPGNKTTM------------------ 307 Query: 277 EKLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDD 336 R ++A + + + S+ D RD + Sbjct: 308 -LSSIVGPRGKVWAFEKDKQRFQVLTEMIKLAGCTTGSGISNRLDHLSQTDSQKKRDENR 366 Query: 337 IVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSA 396 I + FQ ++ + F V +S CS+ K+++EEVV ++L E++ + Sbjct: 367 IQSLSRFQTTIVSHALRFPSVH-QVAYSTCSIWKEENEEVVFRILNK----PEMIDKGWS 421 Query: 397 YWKSIDMAMALSPEGWIRI----------TPDMLEKIDGVSSGMDGFFAVALRR-LIQP 444 + D + S W R + + + D GFFA R + QP Sbjct: 422 LKEVKDTFLNNSKTPWGRTGEVISTKEKHLSERMIRFDPSVDQTIGFFAAVFHRPVPQP 480 >gi|301112627|ref|XP_002998084.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262112378|gb|EEY70430.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 490 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 79/449 (17%), Positives = 130/449 (28%), Gaps = 95/449 (21%) Query: 51 AIVNVTLRFLPRIDAVLD------FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 A+V TLR+ P + +L L + K+ L+ V++ +L Sbjct: 39 ALVCETLRYKPLLRELLAAVPECYKALKTPKNAKEPP--ALVFVALYDLLLGR------- 89 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 + + A ++ + K Sbjct: 90 -----------------QKIQGGGYVKKALMQHQTSFRAALARLKIKRKVASNEALLPPE 132 Query: 165 VLAISDACISPLYI-DLTVKFDIETWAHKLNAVMLPTGGIRLKELPES--IVSLPGFAEG 221 A + I L + L LP + G Sbjct: 133 NRQQHLALPRYVRINTLLASPEEAKAFASEYDAKQDRDVRDLLVLPSGTELHEHEMVKSG 192 Query: 222 VWWVQDASASIPVQLFG------TLNNLSVLDLCAAPGGKTAQ--------------LIV 261 +QD ++ P + N V+D CAAPG KT+ Sbjct: 193 KLVLQDKASCFPAYVLHGEHAEAQDNQGDVIDACAAPGNKTSHLAMLLQQQDGDGEDATC 252 Query: 262 SGAKVTALDVSKRRLEKLRCNLDRLHL-YAEDIIEMDAFDYCPKKLFDA----VLVDAPC 316 +V A D S +RL+ L+ + + D +L+D C Sbjct: 253 PKRRVFAFDRSPKRLDLLKRRMTLAGAATRVQVELQSFLDVPVDDDMYRNVRSILLDPSC 312 Query: 317 SSTGTIRRHPDVLWTRDTDDI------------------VKSACFQRKLLLQGISF--VK 356 S +G R +L + D A FQ + L + SF VK Sbjct: 313 SGSGMTNRLDHLLDIASSHDTVLEPDHGAEYEEDTAKRLQSLADFQLQALRKAFSFPQVK 372 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP-----VELVPLNSAYWKSIDMAMALSPEG 411 VV+S CS+ +++ EEVV L S L P +++ + L+ E Sbjct: 373 ---RVVYSTCSIFQKEDEEVVAAALESEENSGVTRPFVLKPALTSWPRRGLQVAGLTAEQ 429 Query: 412 WIRITPDMLEKIDGVSSGMDGFFA--VAL 438 L + +G+ +GFF L Sbjct: 430 A-----QALVRANGLEDSTNGFFVKNARL 453 >gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM 12804] gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii] Length = 138 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 6/114 (5%) Query: 12 SHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + T +D D+ S+ D + +++ L+ + Sbjct: 1 MQGVYAWLLRGGEGTQDAGEIDAHLRDA--DDFSEADAQWFKTLLHGVLQEAGGLRERFT 58 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121 + L +L + ++ +L+V ++ AVE AK F Sbjct: 59 PYIDRPLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGFK 112 >gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469] gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469] Length = 167 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 12/131 (9%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLL--DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + LL S+ +L D + R + Sbjct: 8 RTRARSQALQLLFQAEATNRSVLEVLGGDYTLSEGPLDE-------YARLLAVGADGIRD 60 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 +D ++ S+ R + LLR+S+ +IL +V ++ V+ A+ + Sbjct: 61 DLDDIIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLARAYCGDDS 120 Query: 120 FAKLVNSILRR 130 + +N +L R Sbjct: 121 -PRFINGVLGR 130 >gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype B'] Length = 135 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 3 SGMNARLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR+ +L + + +L+ D + + + + + + Sbjct: 2 TRRQARICVVQMLYNLSFHDKEQAQEILNENLLD-----IKGKVKTFISETFEGIVDNMD 56 Query: 62 RIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRH 119 ID ++ ++ +L R +LR++V +I Y D+ ++ AVE A ++ Sbjct: 57 AIDTEIEANLVDWNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIA-QEYSTEK 115 Query: 120 FAKLVNSILRRVSR 133 K +N IL +++ Sbjct: 116 SGKFINGILGNMNK 129 >gi|225561290|gb|EEH09570.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 556 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 40/166 (24%), Gaps = 32/166 (19%) Query: 298 AFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKP 357 + + D + K + Q +++ F P Sbjct: 355 QDPHDRGMKRKRPAPSPVPTLGRPAASEHQNTTNIDPGRLTKLSNLQTRIVEHAFRF--P 412 Query: 358 GGIVV-FSNCSLDKQDSEEVVQKVLR-------------SSPIPVELVPLNSAYWKSIDM 403 V +S CS+ Q++E V+ + L+ L + Sbjct: 413 NATRVTYSTCSIHAQENEVVIARALKSPVAQRRGWRIISRHEQVEGLRKWKYRGITPGES 472 Query: 404 AMALSP---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG +R P+ E GFF R Sbjct: 473 GDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511 >gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408] gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408] Length = 152 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 8/127 (6%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57 S R ++ L + ++ + ++++ + V +V Sbjct: 13 SRHEIREMALQALFPLDFNADLTKEDAIFNAIELDHRDMINEDESEFVPVYLDTLVGGVC 72 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V++ L ++ + R +LR+++ ++ Y DV ++ A+E AK Sbjct: 73 AKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNEAIELAKTF 132 Query: 115 KENRHFA 121 ++R Sbjct: 133 SDDRSRK 139 >gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum DSM 5476] gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum DSM 5476] Length = 132 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 8/123 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 MK R + L+ + ++ ++ F + S V A+ + + Sbjct: 1 MK-RHQMRENAFILVFEKIFNDDDVSEVIAAAEECGEFEVNSD-----VIALFTGVQQHI 54 Query: 61 PRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D ++ L + R + +LR++V +I+Y V ++ AVE AK Sbjct: 55 SELDRLISEHLTKWNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELAKEYATQE 114 Query: 119 HFA 121 A Sbjct: 115 DAA 117 >gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC 29176] gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC 29176] Length = 140 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 3/120 (2%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 R LL L+Y + +D+ ++ + I Sbjct: 3 RTELREHIFKLLFQ-EEFNREEDMQEHLKYYFMTLENAADKDKDYIQEKYEAVAGHIAEI 61 Query: 64 DAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 D +++ R +LR++V ++ + +V ++ AVE AKR + Sbjct: 62 DELINQYAKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAKRFSGGDSPS 121 >gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC 8802] gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802] Length = 235 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R ID L+ ++ L R + +LR++VA+IL+L++ + + Sbjct: 141 REYALELIGAVNRRRTEIDQQLEAVLVDWQLNRLPKIDRDILRIAVAEILFLEIPNKVAI 200 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 + A+E AKR ++ + + +N +LRR + Sbjct: 201 NEAIEMAKRYSDDEGY-RFINGVLRRFTER 229 >gi|89256456|ref|YP_513818.1| Sun protein [Francisella tularensis subsp. holarctica LVS] gi|167010375|ref|ZP_02275306.1| ribosomal RNA small subunit methyltransferase B [Francisella tularensis subsp. holarctica FSC200] gi|254367791|ref|ZP_04983812.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. holarctica 257] gi|290953007|ref|ZP_06557628.1| Sun protein [Francisella tularensis subsp. holarctica URFT1] gi|295313773|ref|ZP_06804347.1| Sun protein [Francisella tularensis subsp. holarctica URFT1] gi|89144287|emb|CAJ79570.1| Sun protein [Francisella tularensis subsp. holarctica LVS] gi|134253602|gb|EBA52696.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella tularensis subsp. holarctica 257] Length = 158 Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 10/162 (6%) Query: 5 MNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRID 64 MN R +++ + ++ + SL L +E LL +D+ ++ + R ++ Sbjct: 1 MNTRAIAAKTILDILDNKYSL---LTIEQKLVKLNLLE-QDKSFIKLLCYEFFRHYYSLE 56 Query: 65 AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ L K L+ + I + YA ++ V A + + KLV Sbjct: 57 KIIALYLTQKTKVKAKV---LIMLGALHIFEIKQPYYATINETV-AACKVLKIIWAKKLV 112 Query: 125 NSILRRVSREKIEL--LQRIAGISIIPEWFKERLENFYGKER 164 N ILR ++R ++ + +PEW + L+ Y + Sbjct: 113 NRILREMTRNIEDITSIYTQNKAIDMPEWLCDTLKKQYPNDH 154 >gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str. Malish 7] gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish 7] Length = 156 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 57/142 (40%), Gaps = 14/142 (9%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L ++A L + + + +V Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLPENLKISLSISHFKMLVKSV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 + ++D ++D L L+ LLRVS+ ++L+ V++ + A Sbjct: 72 FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131 Query: 114 DKENRHFAKLVNSILRRVSREK 135 N H VNS+L ++++E Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152 >gi|299473126|emb|CBN78702.1| conserved unknown protein [Ectocarpus siliculosus] Length = 621 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 15/117 (12%) Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 + A FQ + LL+ +SF + V +S CS+ ++E+VV K L P P L ++A Sbjct: 400 ARLAAFQLQGLLKAMSFPQVQ-RVCYSTCSVHAVENEDVVAKALDQQPTPSPLTTASTAS 458 Query: 398 WKSIDMAMALSPEGWIRITP--------------DMLEKIDGVSSGMDGFFAVALRR 440 + + + P L + D +GFF R Sbjct: 459 ASAAASSERFELSRCLSRWPRRGLAVSGLSKAQAACLARTDPFEDETNGFFVAVFER 515 >gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1] gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1] Length = 134 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 3/117 (2%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 AR ++ + + SL +L + S+ R +V TL+ + Sbjct: 9 AREKATIGVYQNLLVDSSLEDIL-TFLSEEKTLTKSEETMAFSRWLVETTLQNKESYQTL 67 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ++ L R + +L ++ ++L D+ V++ AV AK+ ++ + Sbjct: 68 IEKHLKKGWKFERLSMMEKAILMIAACELLESDLPKTIVINEAVLNAKKFCDDDSYK 124 >gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium amycolatum SK46] gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium amycolatum SK46] Length = 234 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 5/122 (4%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA-IVNVTLRFLPRIDAVLDFV 70 LL ++ + + LL+ L IV + ID+ + Sbjct: 39 VDLLFEAEQRGVDVVKLLEERLEMVRNPDLDVNPIAEYTEQIVRGVAAEIIGIDSTISSY 98 Query: 71 L--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L R + +LR+S ++ Y DV V VE A + A +N++ Sbjct: 99 LTEEWPLRRLPAVDRAILRLSTWELFYNSDVPPRVAVVEGVELA-SEYSTDVAAPYINAV 157 Query: 128 LR 129 L Sbjct: 158 LD 159 >gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC 8801] gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801] Length = 211 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R ID L+ ++ L R + +LR++VA+IL+L++ + + Sbjct: 117 REYALELIGAVNRRRTEIDQQLEAVLVDWQLNRLPKIDRDILRIAVAEILFLEIPNKVAI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 + A+E AKR ++ + + +N +LRR + Sbjct: 177 NEAIEMAKRYSDDEGY-RFINGVLRRFTER 205 >gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii 177R1B] Length = 134 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 12 SHLLSCV--MRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L + + + D+ + ++ ++ RID +++ Sbjct: 1 MKILYAYRFEDGQQDIMEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEK 60 Query: 70 VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L R +L+R++V ++L+ DV +D AV+ A VN I Sbjct: 61 YSKDWPLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119 Query: 128 LRR 130 L R Sbjct: 120 LGR 122 >gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii str. Rustic] gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii str. Rustic] Length = 156 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 14/142 (9%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L +++ L + + + +V Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 + ++D ++D L L+ LLRVS+ ++L+ V++ + A Sbjct: 72 FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131 Query: 114 DKENRHFAKLVNSILRRVSREK 135 N H VNS+L ++++E Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152 >gi|301095058|ref|XP_002896631.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262108861|gb|EEY66913.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 383 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%) Query: 307 FDAVLVDAPCSSTGTIRR----------HPDVLWTRDTDDIVKSACFQRKLLLQGISFVK 356 +D VLVDA C+ G+IR V ++ +I + Q L+ G S ++ Sbjct: 266 YDKVLVDAECTHDGSIRHLQRLITGAKWEEYVRDHLNSSEIERILKLQHGLIRNGFSLLR 325 Query: 357 PGGIVVFSNCSLDKQDSEEVVQKVLRSSPIP 387 PGG +++S CSL + +E++V K L P+ Sbjct: 326 PGGTMIYSTCSLSVKQNEDIVSKFLEDQPLA 356 >gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius okutanii HA] gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius okutanii HA] Length = 141 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 10/121 (8%), Positives = 36/121 (29%), Gaps = 5/121 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 R L + + ++ ++ + +S ++ + L Sbjct: 5 TPKQRTRERVIQALYQYLVSGGEV-FQIEQQFLNQKQGKIS---KVFFSDLFINILENRF 60 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +D ++ + +L + ++ + +V V++ ++ AK + Sbjct: 61 VLDELITSTISRGTEELGSVEHSILYLGTFELKFNSEVPYKVVINESLALAKLYGAEGSY 120 Query: 121 A 121 Sbjct: 121 K 121 >gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris MG1363] gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris MG1363] gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp. cremoris NZ9000] Length = 325 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 11/126 (8%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAVL 67 + + + L ++ +L+ D+ +V+ L ++ + Sbjct: 197 EQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINI 256 Query: 68 DFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L S R Q +L+VS +IL+ D + V+ A+E +K D + ++ +N Sbjct: 257 SKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSK-DFSDEKSSRFIN 315 Query: 126 SILRRV 131 +L Sbjct: 316 GVLTNF 321 >gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp. cremoris SK11] gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp. cremoris SK11] Length = 325 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 11/126 (8%) Query: 16 SCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAVL 67 + + + L ++ +L+ D+ +V+ L ++ + Sbjct: 197 EQLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINI 256 Query: 68 DFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 L S R Q +L+VS +IL+ D + V+ A+E +K D + ++ +N Sbjct: 257 SKYLAKNWSFSRLTLVEQAILQVSTYEILFTDTPNVVAVNEAIELSK-DFSDEKSSRFIN 315 Query: 126 SILRRV 131 +L Sbjct: 316 GVLTNF 321 >gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC 43243] gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC 43243] Length = 135 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 3/121 (2%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R +L V S ++ ++ + V+ + LP Sbjct: 6 TRHTIRKHIFSMLFRVEFHD-SSEISSQDGLYLDTIDNITDEERGYMEKRVSAIVELLPE 64 Query: 63 IDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 ID L+ V L R +LR++V ++LY D+ ++ AVE AK + Sbjct: 65 IDKKLESVSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINEAVELAKVYGGDTSP 124 Query: 121 A 121 A Sbjct: 125 A 125 >gi|46203265|ref|ZP_00051777.2| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum magnetotacticum MS-1] Length = 188 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 7/173 (4%) Query: 3 SGMNARLVSSHLLSCVM--RKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 G+ AR V+ ++ ++ + ++L L + R L Sbjct: 18 PGLAARHVAREAVATLLGAARGLALEDALAQAGRGVGLAPADAALARAIATASF---RRL 74 Query: 61 PRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHF 120 I A L L LP + L LL AQIL L VAD+A VDL+V AK D + +H Sbjct: 75 GFIRAALAARLRDGLPDDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKADPQLQHL 134 Query: 121 AKLVNSILRRVSREKIELLQRIAGI--SIIPEWFKERLENFYGKERVLAISDA 171 A LVN++LRR++RE+ + P+W R YG+E I+ A Sbjct: 135 APLVNAVLRRIARERDAIRAEEGDPLGGNTPDWLARRWREAYGEEAARKIAAA 187 >gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC 17745] gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC 17745] Length = 134 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + +L A D+ +I+ L + Sbjct: 5 RNRREARQYAFQMLYANEFHTNQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNVE 58 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118 IDA L + + +LR++V ++ + ++ A++ AK + Sbjct: 59 AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAINEAIQLAKEFGSDA 118 Query: 119 HFA 121 + Sbjct: 119 SYK 121 >gi|307611473|emb|CBX01142.1| hypothetical protein LPW_28411 [Legionella pneumophila 130b] Length = 66 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 17/80 (21%) Query: 361 VVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDML 420 +V++ CS+ ++E + + + + + +I P Sbjct: 1 MVYATCSIMSDENELQIARFVAEH---------SDCQVSDGKWSWGRWTGHGQQILPG-- 49 Query: 421 EKIDGVSSGMDGFFAVALRR 440 GMDGFF LR+ Sbjct: 50 ------EHGMDGFFYSVLRK 63 >gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter cancerogenus ATCC 35316] gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter cancerogenus ATCC 35316] Length = 118 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 S + D+EY + + + D + R +++ +D ++ L L + Sbjct: 2 SHNDIADVEYQFLSEQDVKDVDVLYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEK 61 Query: 84 QLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKIEL 138 +LR+++ ++ DV ++ A+E AK K VN +L + + Sbjct: 62 AVLRIALFELSKRDDVPYKVAINEAIELAKTF-GAEDSHKFVNGVLDKAAPAIRPH 116 >gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724] gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724] Length = 144 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 13/130 (10%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R L + + F S + Q+ + + L + D ++ Sbjct: 9 REKVLEFLFQKDLGQE----------IEVDFSDFSPQGQVFAYKLYDGALYYKDLADEII 58 Query: 68 DFVLIS-SLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVN 125 + L R + +LR+++A++ + D+ V+ AVE AK+ + +N Sbjct: 59 SKFSKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAVELAKKYVSPE-AGRFIN 117 Query: 126 SILRRVSREK 135 ILR + R Sbjct: 118 GILRNIVRNW 127 >gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium urealyticum DSM 7109] gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM 7109] Length = 248 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L + I + + + + IV L Sbjct: 41 ARYKARRRAVDILFEAEFRDIDPVDIMEERAELAKDQENQIKPIPEYTSQIVPGVASNLD 100 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID + L +L R + ++RV+ ++++ DV + +E A + + Sbjct: 101 AIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADVPHRVALSEGIELA-SEYSHV 159 Query: 119 HFAKLVNSILR 129 VN++L Sbjct: 160 KAPDYVNAVLD 170 >gi|148705817|gb|EDL37764.1| NOL1/NOP2/Sun domain family, member 7, isoform CRA_a [Mus musculus] Length = 761 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%) Query: 11 SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66 ++++ + +R +++ S+ R + Q L + TL++ ++++ Sbjct: 54 AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 113 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D + SS L L+ V + ++ E +E + + Sbjct: 114 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 171 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 L ++ I+PE +++ + I+ + IS + ++ Sbjct: 172 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 231 Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237 I + K+ AV + + ++++ + QD S S+ V Sbjct: 232 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 291 Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N+ L G + + + R R+ Sbjct: 292 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 351 Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333 +I+ K +L+ CSS G H D +D Sbjct: 352 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 411 Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + Q + L + F K +V+ CS+ K+++E+VV+K L V++ P Sbjct: 412 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 470 Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + LS + + R+ P + Sbjct: 471 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 503 >gi|158564127|sp|Q14AW5|NSUN7_MOUSE RecName: Full=Putative methyltransferase NSUN7; AltName: Full=NOL1/NOP2/Sun domain family member 7 Length = 724 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%) Query: 11 SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66 ++++ + +R +++ S+ R + Q L + TL++ ++++ Sbjct: 54 AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 113 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D + SS L L+ V + ++ E +E + + Sbjct: 114 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 171 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 L ++ I+PE +++ + I+ + IS + ++ Sbjct: 172 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 231 Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237 I + K+ AV + + ++++ + QD S S+ V Sbjct: 232 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 291 Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N+ L G + + + R R+ Sbjct: 292 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 351 Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333 +I+ K +L+ CSS G H D +D Sbjct: 352 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 411 Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + Q + L + F K +V+ CS+ K+++E+VV+K L V++ P Sbjct: 412 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 470 Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + LS + + R+ P + Sbjct: 471 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 503 >gi|109732410|gb|AAI15879.1| NOL1/NOP2/Sun domain family, member 7 [Mus musculus] gi|109733310|gb|AAI16659.1| NOL1/NOP2/Sun domain family, member 7 [Mus musculus] Length = 704 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%) Query: 11 SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66 ++++ + +R +++ S+ R + Q L + TL++ ++++ Sbjct: 54 AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 113 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D + SS L L+ V + ++ E +E + + Sbjct: 114 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 171 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 L ++ I+PE +++ + I+ + IS + ++ Sbjct: 172 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 231 Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237 I + K+ AV + + ++++ + QD S S+ V Sbjct: 232 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 291 Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N+ L G + + + R R+ Sbjct: 292 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 351 Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333 +I+ K +L+ CSS G H D +D Sbjct: 352 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 411 Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + Q + L + F K +V+ CS+ K+++E+VV+K L V++ P Sbjct: 412 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 470 Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + LS + + R+ P + Sbjct: 471 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 503 >gi|46519166|ref|NP_081878.1| putative methyltransferase NSUN7 [Mus musculus] Length = 700 Score = 67.2 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 67/453 (14%), Positives = 144/453 (31%), Gaps = 44/453 (9%) Query: 11 SSHLLSCVMRKRISLTCLLD---LEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV- 66 ++++ + +R +++ S+ R + Q L + TL++ ++++ Sbjct: 55 AANIFQGIRIQRSPDKVIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESIL 114 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 +D + SS L L+ V + ++ E +E + + Sbjct: 115 IDSYIFSSTT-IASQLNSLIIVMLYD-FQDRKFQPRILSENEETIPEVQEVENLLNGFKT 172 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKF-- 184 L ++ I+PE +++ + I+ + IS + ++ Sbjct: 173 KLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPLYAWINTSKISLEEVYNNLRRKG 232 Query: 185 -----DIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLF 237 I + K+ AV + + ++++ + QD S S+ V Sbjct: 233 YSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIFQDKSRSLAVHSV 292 Query: 238 GTLNNLSVLDLCAAPGGKTAQLI-------VSGAKVTALDVSKRRLEKLRCNLDRLHLYA 290 L N+ L G + + + R R+ Sbjct: 293 KALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGCQN 352 Query: 291 EDIIEMDAFDYCPKKL----FDAVLVDAPCSSTGTIR-------RHPDVLWTRD------ 333 +I+ K +L+ CSS G H D +D Sbjct: 353 IEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEDKSLLQDLSQGGL 412 Query: 334 -TDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 D + Q + L + F K +V+ CS+ K+++E+VV+K L V++ P Sbjct: 413 PKDKLETLVQQQFEQLTHAMKFTKVQA-IVYCTCSVSKEENEDVVEKALEYQSSGVKMQP 471 Query: 393 ---LNSAYWKSIDMAMALSPEGWIRITPDMLEK 422 + LS + + R+ P + Sbjct: 472 YRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNN 504 >gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759] gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759] Length = 153 Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 3/103 (2%) Query: 30 DLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRV 88 D E + +S++D+ + V L ID + + LPR +LR+ Sbjct: 40 DEEDDPMLYASVSEKDKEYITDKVMDILAHKDAIDNTISEISEGWKLPRIGKEELAILRL 99 Query: 89 SVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 V +++Y + + + ++ AVE AK+ + +K VN++L + Sbjct: 100 GVYEVVYDETIPEKVAINEAVELAKKYC-DVSASKFVNALLAK 141 >gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 98 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVA 99 ++ D R ++ T+ ++ ID L L + + +LR+S ++ Y LDV Sbjct: 1 MNGVDLPYFRKLLRGTVLYVEAIDNDLRPFLDRAEDEVDPIERTILRLSAYELKYELDVP 60 Query: 100 DYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 V++ +E AK + K +N IL + Sbjct: 61 YKVVINEGIEVAK-VFGSDDSHKYINGILDK 90 >gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829] gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM 15829] gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM 15829] Length = 239 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 8/134 (5%) Query: 4 GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRI 63 AR + L+ + + + +L Y S L + + T ++ Sbjct: 13 RTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD-----FGKRLALGTDELRDKL 67 Query: 64 DAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 DA++ V+ + L R + +LR+++ +++ DV ++ +V AK + Sbjct: 68 DALISRVITNWNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAKAY-GTDESS 126 Query: 122 KLVNSILRRVSREK 135 VN +L +V+R Sbjct: 127 HFVNGVLGQVARMM 140 >gi|260664418|ref|ZP_05865270.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii SJ-7A-US] gi|260561483|gb|EEX27455.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii SJ-7A-US] Length = 262 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 9/101 (8%) Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYW 398 + Q+++L + + +K GG +++S C+ ++ E++ ++ + +N A Sbjct: 1 MCSSRQKEILNEAVKMLKTGGSLLYSTCTYAPEEDEKICAYLVNKLGFKLVKTKVNVASA 60 Query: 399 KSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVAL 438 L+ E R P F Sbjct: 61 GVPAWGENLAGIEYARRFWPQDEIGEGQ--------FLAKF 93 >gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201] gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila DC2201] Length = 138 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 7/132 (5%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M + AR+ + +L ++ S+ L + +++ ++ I+ Sbjct: 1 MSGARSKARVRAVEILFEAEQRNESVRDAL-VRRRENSSSPINP----YTVEILEGVDER 55 Query: 60 LPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENR 118 ID L+ L R + LRV ++LY V R Sbjct: 56 REDIDEFLETYSQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAVAVTRQLSTD 115 Query: 119 HFAKLVNSILRR 130 + VN +L R Sbjct: 116 DSPRFVNGLLGR 127 >gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246] gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae ESF-5] gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246] gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5] Length = 156 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 57/142 (40%), Gaps = 14/142 (9%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L +++ L + + + +V Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKSV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 + ++D ++D L L+ LLRVS+ ++L+ V++ + A Sbjct: 72 FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131 Query: 114 DKENRHFAKLVNSILRRVSREK 135 N H VNS+L ++++E Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152 >gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp. succinogenes S85] Length = 146 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 5/116 (4%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 AR+ + LL + ++ L + L + +V++ L +D+ Sbjct: 8 PARVFAMQLLYAMEISGGTVADALPGVLEA---QPLQDNMKKYGMKLVDLVLAHKAELDS 64 Query: 66 VLDFVL-ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRH 119 ++ + R + +LR+++ ++LY ++ V+ AV+ A + + Sbjct: 65 EIEACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAKFSTDSS 120 >gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211] gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211] Length = 169 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 6/124 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLE-----YGDSAFRLLSQRDQILVRAIVNVT 56 S AR + +L R ++ L L+ +GD + L R ++ Sbjct: 13 NSRRAAREFAFRVLFESERGQVPLQEALNRARLNMAHGDDTYPELGDEAVDFARDLLGAQ 72 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDK 115 +D++L + + + + +LR++ A++L + +++ V A++ Sbjct: 73 TARRAEVDSLLTRTIRGWTFEQMAQTDLNVLRLATAEMLRGEDPHPPIIESFVRVARKFG 132 Query: 116 ENRH 119 Sbjct: 133 GEDS 136 >gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius ATCC 35311] gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius ATCC 35311] Length = 158 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 9/144 (6%) Query: 3 SGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILV----RAIVNVTL 57 + R + L + ++ +D + ++S+ + L+ +V+ Sbjct: 7 TRREIREKALQALFPLDFNTELTKQDAIDYALMLDNYEVISEDQENLIPTYLDFLVDGVC 66 Query: 58 RFLPRIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V+ +L + R +LR++V +++Y DV ++ A+E AK+ Sbjct: 67 SHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEALELAKKY 126 Query: 115 KENRHFAKLVNSILRRVSREKIEL 138 + + K N IL V +E + Sbjct: 127 -SDDNARKFTNGILANVLKEIEKH 149 >gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex HEL-45] gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex HEL-45] Length = 158 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 9/138 (6%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGD-----SAFRLLSQRDQILVRAIVNV 55 MKS +RL + L + ++ + + + D ++ Sbjct: 14 MKS--ASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGDEMQEGDVDHFSRVLED 71 Query: 56 TLRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 + + ID + + + ++ R +L+ L R + A+ + + V+ V+ A Sbjct: 72 AVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEFRHDETPPRVVIKEYVDVAHA 131 Query: 114 DKENRHFAKLVNSILRRV 131 VN++L + Sbjct: 132 FFPEGREPSFVNAVLDHM 149 >gi|67516687|ref|XP_658229.1| hypothetical protein AN0625.2 [Aspergillus nidulans FGSC A4] gi|40746012|gb|EAA65168.1| hypothetical protein AN0625.2 [Aspergillus nidulans FGSC A4] gi|259489109|tpe|CBF89108.1| TPA: NOL1/NOP2/sun domain protein, putative (AFU_orthologue; AFUA_1G17090) [Aspergillus nidulans FGSC A4] Length = 578 Score = 66.8 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 35/135 (25%) Query: 332 RDTDDIVKSACFQRKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLRS------- 383 D ++K + Q +++ ++F P V +S CS+ ++E VVQ++L S Sbjct: 416 ITQDRLLKLSNLQFRIVTHALAF--PAARKVTYSTCSIHLLENEAVVQRILESDIAKRRG 473 Query: 384 -----------------SPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDG 425 P + ++ ++ G +R P Sbjct: 474 WRVLRRDEQPEGLKKWIHRGVKREEPSADGAIEGGEVNLSDEELGGCLRCWPGD------ 527 Query: 426 VSSGMDGFFAVALRR 440 G GFF R Sbjct: 528 -EEGTGGFFVAGFVR 541 >gi|270290385|ref|ZP_06196610.1| transcription antitermination factor NusB [Pediococcus acidilactici 7_4] gi|270281166|gb|EFA26999.1| transcription antitermination factor NusB [Pediococcus acidilactici 7_4] Length = 134 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 12/136 (8%) Query: 1 MK-SGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQI--LVRAIVNVT 56 M + R + ++ S+ E + D + +V Sbjct: 1 MSLNRHQMRESAFKMIFA-----QSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGV 55 Query: 57 LRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRD 114 + I+ + L ++ R + +L++ +I + +V + ++ A+E AK+ Sbjct: 56 QENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVPNNVAINEALELAKKY 115 Query: 115 KENRHFAKLVNSILRR 130 + K +N +L Sbjct: 116 -TDEKARKFINGVLSN 130 >gi|296423439|ref|XP_002841261.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637498|emb|CAZ85452.1| unnamed protein product [Tuber melanosporum] Length = 710 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 312 VDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQ 371 ++ S+ D A FQ +++ + F + +S CS+ Q Sbjct: 350 LNTLPSAVEYDDSRVWRQRGTVEDRTFSLADFQVRMIEHAMRF-PSATRITYSTCSIHAQ 408 Query: 372 DSEEVVQKVL----RSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVS 427 ++E VV L V + + EG ++ D + + Sbjct: 409 ENERVVMAALNTSVARRRGWVTEPRHLNKMRDWFRRGILEECEGNEQVA-DSCIRFNPWV 467 Query: 428 SGMDGFFAVALRRLIQPK 445 G GFF R Q + Sbjct: 468 DGGIGFFVAVFIRNEQER 485 >gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18] gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18] Length = 114 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 3/85 (3%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105 + ++V + IDA + L L R + +LRV+V ++ Y+ ++ ++ Sbjct: 26 FLESLVVGFVDNKEEIDAAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTIN 85 Query: 106 LAVEQAKRDKENRHFAKLVNSILRR 130 A+E AK + + +N +L Sbjct: 86 EAIEIAKTF-GDEESRRFINGVLSN 109 >gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1] gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2] gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200] gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3] gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5] gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96] gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704] gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1] gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol] gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1] gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6] gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188] gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG] gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis T11] gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis X98] gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis PC1.1] gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis TUSoD Ef11] gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1] gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2] gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200] gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3] gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5] gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96] gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704] gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1] gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol] gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1] gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6] gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188] gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG] gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis T11] gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis X98] gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis PC1.1] gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76] gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis TUSoD Ef11] gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis 62] Length = 150 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 3 SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 + R + L + K+ ++ L + + + +V Sbjct: 7 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 66 Query: 58 RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V+ L S+ R +LR+++ ++LY DV + ++ AVE +K+ Sbjct: 67 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 126 Query: 115 KENRHFAKLVNSILRRVSR 133 ++R VN +L V + Sbjct: 127 SDDRSRK-FVNGVLSNVMK 144 >gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis URRWXCal2] gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2] Length = 156 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 57/143 (39%), Gaps = 14/143 (9%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L +++ L + + + +V Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLSISHFKMLVKSV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 + ++D ++D L L+ LLRVS+ ++L+ V++ + A Sbjct: 72 FENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131 Query: 114 DKENRHFAKLVNSILRRVSREKI 136 N H VNSIL ++++E Sbjct: 132 M-LNEHEIGFVNSILDKIAQENN 153 >gi|321438781|emb|CBZ12541.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 710 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 4/132 (3%) Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + N R+H I E + K + A + G D L + Sbjct: 459 RGVGNEYRMHHMNLGIAEGEVRSQTEKAPSASSQPLASSHAGGGEHSKQDAL----SPSA 514 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q KLL G ++PGG +V++ CS +E VV + L + E V Sbjct: 515 ASIFALQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVHRFLERANAVNEKVDQGDVR 574 Query: 398 WKSIDMAMALSP 409 + + P Sbjct: 575 GRPTANEVPRRP 586 >gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44] gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44] Length = 134 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + +L A D+ +I+ L + Sbjct: 5 RNRREARQYAFQMLYANEFHTDQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNVE 58 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118 IDA L + + +LR++V ++ + ++ A++ AK + Sbjct: 59 AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDA 118 Query: 119 HFA 121 + Sbjct: 119 SYK 121 >gi|73537071|ref|XP_847954.1| hypothetical protein [Leishmania major strain Friedlin] Length = 1085 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 4/132 (3%) Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + N R+H I E + K + A + G D L + Sbjct: 459 RGVGNEYRMHHMNLGIAEGEVRSQTEKAPSASSQPLASSHAGGGEHSKQDAL----SPSA 514 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAY 397 Q KLL G ++PGG +V++ CS +E VV + L + E V Sbjct: 515 ASIFALQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVHRFLERANAVNEKVDQGDVR 574 Query: 398 WKSIDMAMALSP 409 + + P Sbjct: 575 GRPTANEVPRRP 586 >gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei BL23] gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB) [Lactobacillus casei BL23] gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W] gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II] Length = 135 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 30 DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84 D+ + + +D + +V L +DA L L L R Sbjct: 22 PEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDLI 81 Query: 85 LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 +LR+ + +I Y + + + A ++ A+ AKR +++ AK VN IL + Sbjct: 82 ILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQS-AKFVNGILANFIQ 130 >gi|59800707|ref|YP_207419.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA 1090] gi|194097970|ref|YP_002001018.1| transcription antitermination protein NusB [Neisseria gonorrhoeae NCCP11945] gi|239998442|ref|ZP_04718366.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 35/02] gi|240080146|ref|ZP_04724689.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA19] gi|240112360|ref|ZP_04726850.1| transcription antitermination protein NusB [Neisseria gonorrhoeae MS11] gi|240115100|ref|ZP_04729162.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID18] gi|240117383|ref|ZP_04731445.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID1] gi|240122940|ref|ZP_04735896.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID332] gi|240125192|ref|ZP_04738078.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-92-679] gi|240127648|ref|ZP_04740309.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-93-1035] gi|254493161|ref|ZP_05106332.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 1291] gi|260441085|ref|ZP_05794901.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI2] gi|268594303|ref|ZP_06128470.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 35/02] gi|268596297|ref|ZP_06130464.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA19] gi|268598417|ref|ZP_06132584.1| transcription antitermination protein NusB [Neisseria gonorrhoeae MS11] gi|268600773|ref|ZP_06134940.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID18] gi|268603079|ref|ZP_06137246.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID1] gi|268681559|ref|ZP_06148421.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID332] gi|268683788|ref|ZP_06150650.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-92-679] gi|268686028|ref|ZP_06152890.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-93-1035] gi|291044417|ref|ZP_06570126.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI2] gi|293399595|ref|ZP_06643748.1| transcription antitermination factor NusB [Neisseria gonorrhoeae F62] gi|75432566|sp|Q5F9Y0|NUSB_NEIG1 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|238690178|sp|B4RJT3|NUSB_NEIG2 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|59717602|gb|AAW89007.1| putative transcription termination factor [Neisseria gonorrhoeae FA 1090] gi|193933260|gb|ACF29084.1| transcription antitermination protein NusB [Neisseria gonorrhoeae NCCP11945] gi|226512201|gb|EEH61546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 1291] gi|268547692|gb|EEZ43110.1| transcription antitermination protein NusB [Neisseria gonorrhoeae 35/02] gi|268550085|gb|EEZ45104.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA19] gi|268582548|gb|EEZ47224.1| transcription antitermination protein NusB [Neisseria gonorrhoeae MS11] gi|268584904|gb|EEZ49580.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID18] gi|268587210|gb|EEZ51886.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID1] gi|268621843|gb|EEZ54243.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID332] gi|268624072|gb|EEZ56472.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-92-679] gi|268626312|gb|EEZ58712.1| transcription antitermination protein NusB [Neisseria gonorrhoeae SK-93-1035] gi|291011311|gb|EFE03307.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI2] gi|291610164|gb|EFF39286.1| transcription antitermination factor NusB [Neisseria gonorrhoeae F62] gi|317163726|gb|ADV07267.1| transcription antitermination protein NusB [Neisseria gonorrhoeae TCDC-NG08107] Length = 141 Score = 66.8 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 6/132 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + S F + D+ L + T Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 58 AADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)] Length = 244 Score = 66.5 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 45/136 (33%), Gaps = 12/136 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55 AR + L + E+ + ++ R + ++ Sbjct: 31 KARRFALQGLYEWLMTDHRFEQTGKGEWKANPPHDIAARTRASNAMHTVHLGYYHTLMRE 90 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 + ++A++ L + + +L + ++ + L + V+D A++ Sbjct: 91 IPEQIDELEALIAEHLDRQIDQIDMVEHAVLLIGAYELKHSLHIPYKVVLDEAMKL-NTH 149 Query: 115 KENRHFAKLVNSILRR 130 KL+N+++ + Sbjct: 150 FGATDAHKLINAVMDK 165 >gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei ATCC 334] gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334] Length = 135 Score = 66.5 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 7/110 (6%) Query: 30 DLEYGDSAFRLLSQRDQ---ILVRAIVNVTLRFLPRIDAVLDFVLISS--LPRKKYSLQQ 84 D+ + + +D + +V L +DA L L L R Sbjct: 22 PEADKDAVYAEVLPQDTEVPAYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDLI 81 Query: 85 LLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSR 133 +LR+ + +I Y + + + A ++ A+ AKR +++ AK VN IL + Sbjct: 82 ILRLGLYEIRYEEAMPEAAAINEAINLAKRYSDDQS-AKFVNGILANFIQ 130 >gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 140 Score = 66.5 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 6/124 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRK-RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 M+ R LL ++ L L + LS++DQ + L Sbjct: 1 MRRREQ-REHIFKLLFMTEFNSEEEMSEQLSLYF--DTLEELSEKDQEYMSRKYRHVLEK 57 Query: 60 LPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKEN 117 L IDA+L+ R LR++V ++ Y DV ++ AVE AKR Sbjct: 58 LDEIDALLNETSNGWKTKRMSRVDLTALRLAVYELKYDKDVPTGVAINEAVELAKRFGGE 117 Query: 118 RHFA 121 + Sbjct: 118 TSGS 121 >gi|121634481|ref|YP_974726.1| transcription antitermination protein NusB [Neisseria meningitidis FAM18] gi|161869623|ref|YP_001598790.1| transcription antitermination protein NusB [Neisseria meningitidis 053442] gi|254804565|ref|YP_003082786.1| transcription termination factor nusB-family protein [Neisseria meningitidis alpha14] gi|166215703|sp|A1KSU6|NUSB_NEIMF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035894|sp|A9M2W7|NUSB_NEIM0 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|120866187|emb|CAM09927.1| putative RNA polymerase antitermination factor [Neisseria meningitidis FAM18] gi|161595176|gb|ABX72836.1| N utilization substance protein B [Neisseria meningitidis 053442] gi|254668107|emb|CBA04659.1| transcription termination factor nusB-family protein [Neisseria meningitidis alpha14] gi|254670531|emb|CBA06337.1| N utilization substance protein B [Neisseria meningitidis alpha153] gi|308388870|gb|ADO31190.1| putative RNA polymerase antitermination factor [Neisseria meningitidis alpha710] gi|325131863|gb|EGC54563.1| transcription antitermination factor NusB [Neisseria meningitidis M6190] gi|325135725|gb|EGC58337.1| transcription antitermination factor NusB [Neisseria meningitidis M0579] gi|325137913|gb|EGC60488.1| transcription antitermination factor NusB [Neisseria meningitidis ES14902] gi|325141944|gb|EGC64384.1| transcription antitermination factor NusB [Neisseria meningitidis 961-5945] gi|325197903|gb|ADY93359.1| transcription antitermination factor NusB [Neisseria meningitidis G2136] gi|325202521|gb|ADY97975.1| transcription antitermination factor NusB [Neisseria meningitidis M01-240149] gi|325207729|gb|ADZ03181.1| transcription antitermination factor NusB [Neisseria meningitidis NZ-05/33] Length = 141 Score = 66.5 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 43/132 (32%), Gaps = 6/132 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + F + D+ L + T Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREMPDFA---KADEELFNKLFFGTQTN 57 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 58 AADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 117 Query: 119 HFAKLVNSILRR 130 K VN IL + Sbjct: 118 G-HKFVNGILDK 128 >gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27] gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27] Length = 134 Score = 66.5 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + +L A D+ +I+ L + Sbjct: 5 RNRREARQYAFQMLYANEFHTDQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNVE 58 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118 IDA L + + +LR++V ++ + ++ A++ AK + Sbjct: 59 AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMTNKVEPLEPSIAINEAIQLAKDFGSDA 118 Query: 119 HFA 121 + Sbjct: 119 SYK 121 >gi|294894842|ref|XP_002774979.1| williams-beuren syndrome critical region protein, putative [Perkinsus marinus ATCC 50983] gi|239880762|gb|EER06795.1| williams-beuren syndrome critical region protein, putative [Perkinsus marinus ATCC 50983] Length = 461 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 53/296 (17%) Query: 185 DIETWAHKLNAVMLPTGGIRL--------KELPESIVSLPGFAEGVWWVQDASASIPVQL 236 E+ +L + + + L ++++ P + +QD + + Sbjct: 134 SRESAIEQLGSAGIKSKADPLIPDVITVDPWNSKALIESPLVKDFTLVLQDRGSCLSAHS 193 Query: 237 ----FGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++V+D CA+PG KT + + A+++ +R + L L + Sbjct: 194 LLAGVQPGEKITVVDACASPGSKTIHMLQLMRYRKIEGTMVAMELDPKRAKVLLDRLAKA 253 Query: 287 HL----------------------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 ++ D Y ++ V +D CS +G + Sbjct: 254 GFLPRDGTRTSEEVAHLSAAHSPDINVEVRVGDFIKYSSAEVTH-VNLDPSCSGSGLVDV 312 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 H D + + K + FQ ++L ++ V +S CS+ +++ EVV+K L Sbjct: 313 HADSE-SVGAQRLRKLSSFQCRMLDHALTAFPAVQTVCYSTCSIKNEENGEVVKKALNR- 370 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L W + P R ++ GF+ L + Sbjct: 371 -----LQSGYRREWPFEVGSCWKEPTHGAR-----DVQVRPEVDHCRGFYLCKLVK 416 >gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331] gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331] Length = 145 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 13/115 (11%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVL 67 R LL K + LL + +R + IDA L Sbjct: 16 RERVLELLYEADTKGEAPADLLR------------GDEPAFIRERIRGLTERRSEIDAQL 63 Query: 68 DFV-LISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 + L R + +LR++ A++L + AV+ A R R A Sbjct: 64 TAHVIGWQLERLAPIDRAILRLATAELLEASTPPSVAIAEAVKLADRYSTERSAA 118 >gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 139 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57 M + M +R H + + + D+ + + +D + +V L Sbjct: 1 MTNKMESR----HAIREAAFQALFALATNPEADKDAVYAEVLPQDTEVPAYLTTLVEAVL 56 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 +DA L L L R +LR+ + +I Y + + + A ++ A+ AKR Sbjct: 57 SKQADLDAALTPQLKKGWTLNRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLAKRY 116 Query: 115 KENRHFAKLVNSILRRVSR 133 +++ AK VN IL + Sbjct: 117 SDDQS-AKFVNGILANFIQ 134 >gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008] gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008] Length = 134 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 9/123 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + +L A D+ +I+ L Sbjct: 5 RNRREARQYAFQMLYANEFHTDQNDVQFPEGNIHKAM------DKAYANSIIEGVLSNAE 58 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQI--LYLDVADYAVVDLAVEQAKRDKENR 118 IDA L + + +LR++V ++ + ++ A++ AK + Sbjct: 59 AIDATLQPFCKSRKVANLDKVDRSILRIAVWEMNNKVEPLEPSIAINEAIQLAKEFGSDA 118 Query: 119 HFA 121 + Sbjct: 119 SYK 121 >gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110] gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110] Length = 209 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R ID L+ VL L R Q +LR++VA+IL+LDV + + Sbjct: 117 REYTLELIGTINRRRQEIDQQLEAVLKDWQLRRLAKIDQDILRLAVAEILFLDVPEKVAI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 + AVE AKR ++ + + +N +LRR + Sbjct: 177 NEAVELAKRYSDDDGY-RFINGVLRRFTDH 205 >gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec] gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec] Length = 135 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Query: 28 LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLL 86 ++ A D +V + L IDA + +L R + +L Sbjct: 6 AMETLAAHRAQADPPVPD--YTSDLVEGVVAHLAEIDAHIARFAQGWTLDRMPPVDRNIL 63 Query: 87 RVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFA 121 R++V ++ + DV D V+D AV AK R A Sbjct: 64 RIAVLELFWRSDVPDRVVIDEAVRLAKTISTERSPA 99 >gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis TX0017] Length = 156 Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 3 SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 + R + L + K+ ++ L + + + +V Sbjct: 13 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDSEDLVPTYLDLLVGGVC 72 Query: 58 RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V+ L S+ R +LR+++ ++LY DV + ++ AVE +K+ Sbjct: 73 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 132 Query: 115 KENRHFAKLVNSILRRVSR 133 ++R VN +L V + Sbjct: 133 SDDRSRK-FVNGVLSNVMK 150 >gi|322488581|emb|CBZ23828.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 703 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 4/115 (3%) Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + N R+H I E + K P +++ T Sbjct: 452 RGVDNEYRMHHMNLGIAEGEVGPQTEKTP---FASSQPLANSPAGSGEHSKKNTPSPSSA 508 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 A Q KLL G ++PGG +V++ CS +E VV++ L + E V Sbjct: 509 SLFA-LQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVRRFLERANAVNEKVD 562 >gi|159027396|emb|CAO86880.1| nusB [Microcystis aeruginosa PCC 7806] Length = 217 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 46 QILVRAIVNVTLRFLPRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R I+ + ++ L R + +L+++VA++LYLD+ + Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYLDIPQKVAI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130 + A+E AKR ++ + + +N +LRR Sbjct: 177 NEAIELAKRYSDDEGY-RFINGVLRR 201 >gi|327273507|ref|XP_003221522.1| PREDICTED: putative methyltransferase NSUN7-like [Anolis carolinensis] Length = 724 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 71/468 (15%), Positives = 132/468 (28%), Gaps = 55/468 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVLDFVL 71 + + +L L ++ Q L + L++ ++ +L Sbjct: 57 IFQGIHNEKPQDKILVKYGNGPLPPLPDFKNEHFQRLSYELAFSALKYQDVLENILIDSG 116 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I + L L+ V + + +D A+ + R+ + + Sbjct: 117 IYPIQSISDELTSLVVVMLYDLQDRKFEARYNIDDDGSIAEVQEVERYLCSFKTKLAAAL 176 Query: 132 SREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAH 191 +R ++ I+PE + + + L + D+ E + Sbjct: 177 AR-CRIKHDALSIEHILPETIRRQEQRASVLP--LYAWANPLKASLEDIHSSLQKEGFTK 233 Query: 192 KLNAVMLPTGGIRLKELPESIV-----------SLPGFAEGVWWVQDASASIPVQLFGTL 240 + L E ++ SL F QD S S+ V L Sbjct: 234 VESISNFSGYSYCLDMHCEDVLIFPSFLKEQLLSLELFTNQKLLFQDKSRSLAVHSVKAL 293 Query: 241 NNLSVLDLCAAPGGKTAQLIVSG-------AKVTALDVSKRRLEKLRCNLDRLHLYAEDI 293 N+ L A G +S S + +L+ ++ ++ Sbjct: 294 LNMDDDILVAHMGSWLTVAHMSALTNQQTSKVFVCGVKSTAKEAELKGLFAQMECKNIEL 353 Query: 294 IEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRD-------TD 335 I D + P + +L+ CS G H D RD D Sbjct: 354 IREDFANIEPTDNKLQKVKVILLLPRCSGLGVSNPIEFILNEHEDAELLRDLSQGSVAED 413 Query: 336 DIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP--- 392 + A Q + L + F K VV+ CS+ +++E VV K L S + P Sbjct: 414 KLNMLAQQQFEELTHAMQFAKVQA-VVYCTCSVYPEENEVVVNKALTSGAEGTKAQPYKL 472 Query: 393 LNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + S + + P + F L R Sbjct: 473 CPPVLPLCCKSEINTSAANFFKQEPSDISNGC---------FIAVLTR 511 >gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis V583] gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis T8] gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583] gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis T8] Length = 154 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 3 SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 + R + L + K+ ++ L + + + +V Sbjct: 11 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 70 Query: 58 RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V+ L S+ R +LR+++ ++LY DV + ++ AVE +K+ Sbjct: 71 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 130 Query: 115 KENRHFAKLVNSILRRVSR 133 ++R VN +L V + Sbjct: 131 SDDRSRK-FVNGVLSNVMK 148 >gi|167946494|ref|ZP_02533568.1| hypothetical protein Epers_08068 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 222 Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 12/200 (6%) Query: 141 RIAGISIIPEWFKERLENFYGKERVLAISDACISPLY-IDL-TVKFDIETWAHKLNAVML 198 + + +PEW +R+E + I+ P + + + D + +L + Sbjct: 19 QPSSRYAMPEWLLQRIEQRWPDSWQERIAALNARPPMSLRINCRQVDRADYLERLREQQI 78 Query: 199 PTGGIRLK------ELPESIVSLPGFAEGVWWVQDASASIPVQLFGTLNNLSVLDLCAAP 252 + + P ++ LPGF++G VQD A + L VLD CAAP Sbjct: 79 TAEPVPHTESGLTLQRPVDVLELPGFSDGAVSVQDGGAQLAAPLLELQPGQRVLDACAAP 138 Query: 253 GGKTAQLIV--SGAKVTALDVSKRRLEKLRCNLDRLHLYAEDI--IEMDAFDYCPKKLFD 308 GGKT ++ ++TA+D+ +RL+++ NL RL L AE ++ +D Sbjct: 139 GGKTGHMLELADDLRLTAIDLDPQRLQRVAENLQRLGLQAELQAGDAAHPQGRWAERQYD 198 Query: 309 AVLVDAPCSSTGTIRRHPDV 328 +L+D PCS+TG +RRHP Sbjct: 199 RILLDVPCSATGVMRRHPRH 218 >gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3] gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3] Length = 114 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 3/85 (3%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYL-DVADYAVVD 105 + ++V + ID + L L R + +LRV+V ++ Y+ ++ ++ Sbjct: 26 FLESLVVGFVENKEVIDEAIRQNLKKWKLERISIVDRSILRVAVYEMKYMEEIPHNVTIN 85 Query: 106 LAVEQAKRDKENRHFAKLVNSILRR 130 A+E AK + + +N +L Sbjct: 86 EAIEIAKTF-GDEESRRFINGVLSN 109 >gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii HTCC2633] gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii HTCC2633] Length = 158 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 9/126 (7%) Query: 12 SHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQR-----DQILVRAIVNVTLRFLPRIDAV 66 L + ++ D+ +V + +D Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPGDYVETDEDFFENLVTGIVSIQADVDKR 84 Query: 67 LDFVLI--SSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKL 123 + VL L R +++ +LR +++ DV V++ V+ A E Sbjct: 85 ISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTE-PGF 143 Query: 124 VNSILR 129 VN+ L Sbjct: 144 VNATLD 149 >gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758] gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758] Length = 130 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFL 60 M+ R +L + ++L + + +R V Sbjct: 1 MR-RSKVREHIFKMLFSIGFDAADADEQIELYLEQVEEASEEE--RGYMRKKVKDIAAHE 57 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENR 118 IDA+++ R +LR++V ++ + D V ++ AVE AK + Sbjct: 58 EEIDAMINEHTTGWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAINEAVELAKNFSGDE 117 Query: 119 HFA 121 A Sbjct: 118 GPA 120 >gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium efficiens YS-314] gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 188 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 10/173 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L + + + + D + +A + AI+N L Sbjct: 13 ARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNAVDPVVAPVAEYTEAIINGVAVELD 72 Query: 62 RIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 ID +L + + L R + +LRV+ ++LY DV V AVE A + ++ Sbjct: 73 TIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTAVVEAVEIASQYSTDK 132 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGI-----SIIPEWFKERLENFYGKERVL 166 A +N+ L ++ + EL +R A S P + E ++ Sbjct: 133 AGA-YINATLDNMASKVDELRERAANPGAVSGSDAPVAPWDDSEELPAEDEAE 184 >gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365] gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365] Length = 150 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 1 MK--SGMNARLVSSHLLSCVMRK--RISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 MK + AR + +L + LL+ D R+++ Sbjct: 1 MKVGARRRARSYALQVLYALDLNPLEEPTRALLEYAGRFDLRIDEEAGD--FARSLIEQV 58 Query: 57 LRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 L RID + + + R + +LR++V ++ D A V++ AVE AKR Sbjct: 59 YPHLERIDERIQTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAKRF 118 Query: 115 KENRHFAKLVNSILRRVSRE 134 A VN IL RV + Sbjct: 119 GTTESPA-FVNGILDRVDQH 137 >gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral taxon 107 str. F0167] gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral taxon 107 str. F0167] Length = 146 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 19/135 (14%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLL----DLEYGDSAF----------RLLSQRDQIL 48 + R +L + + D + + S D Sbjct: 2 TRHLLREHCFKILLGLDF---YADEEIKVQTDNYFESPSLEDEDDELIHDANFSDGDIEY 58 Query: 49 VRAIVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDL 106 +++ + + ID ++ + L R + +LR+++A++ Y D+ ++ Sbjct: 59 IKSKAMLVMDNKSEIDKIISELSQGWKLERIGRVERNILRLAIAEMKYDDDIPVSVAINE 118 Query: 107 AVEQAKRDKENRHFA 121 AVE AK + ++ Sbjct: 119 AVELAKAYGRDESYS 133 >gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis TX0104] gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis HH22] gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis TX1322] gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis ATCC 29200] gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis R712] gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis S613] gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis TX4248] gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis TX0855] gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis TX2134] gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis TX0860] gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis TX0109] gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis TX0411] gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis TX0470] gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis TX0635] gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 512] gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis TX0102] gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 516] gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis TX0104] gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis HH22] gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis ATCC 29200] gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis TX1322] gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis R712] gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis S613] gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis TX0411] gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis TX0109] gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis TX0860] gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis TX2134] gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis TX0855] gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis TX4248] gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 512] gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis TX0102] gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis TX0635] gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis DAPTO 516] gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis TX0470] gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis TX2137] gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis TX4000] gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis TX0027] gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis TX2141] gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis TX4244] gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis TX0012] gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis TX0031] gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis TX0043] gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis TX0312] gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis TX0645] gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis TX1302] gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis TX1341] gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis TX1342] gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis TX1346] gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis TX0309B] gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis TX0630] gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis TX0309A] gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis OG1RF] Length = 156 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 9/139 (6%) Query: 3 SGMNARLVSSHLLS-----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTL 57 + R + L + K+ ++ L + + + +V Sbjct: 13 TRHEIREKALQALFPLDFNADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLDLLVGGVC 72 Query: 58 RFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRD 114 +D V+ L S+ R +LR+++ ++LY DV + ++ AVE +K+ Sbjct: 73 SRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEAVELSKKY 132 Query: 115 KENRHFAKLVNSILRRVSR 133 ++R VN +L V + Sbjct: 133 SDDRSRK-FVNGVLSNVMK 150 >gi|322500860|emb|CBZ35937.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 409 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 4/115 (3%) Query: 278 KLRCNLDRLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDI 337 + N R+H I E + K + A + D + Sbjct: 160 RGVDNEYRMHHMNLGIAEGEVGSQTEKAPSASSQPLASSRAESGEHSKKDAP----SPSS 215 Query: 338 VKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP 392 Q KLL G ++PGG +V++ CS +E VV++ L + E V Sbjct: 216 TSLFALQSKLLDNGYRQLRPGGTLVYATCSYSYVQNEYVVRRFLERANAVNEKVD 270 >gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC 73102] gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102] Length = 213 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Query: 11 SSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL 67 + +L + + L L+ +D + + +V ID +L Sbjct: 83 ARTMLQEAIACTQTAINQLGTAVDFPELIQLANQDKGVRNYAKELVITVNENRHIIDELL 142 Query: 68 D-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 ++ + R + +L+++VA++ +L V D ++ AVE AKR + + +N Sbjct: 143 STALVDWQVTRLAQLDRDILQIAVAEMKFLGVPDSIAINEAVELAKRYSGDDG-HRFING 201 Query: 127 ILRRVSRE 134 +LRRV+ + Sbjct: 202 VLRRVTEQ 209 >gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118] gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118] Length = 177 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 4/121 (3%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 AR + L + + +++ +D D S+ D + ++ Sbjct: 33 SDRSRAREFALQALYQSLVGKNTVSD-IDAFTRD--LAGFSKADSLHFDTLLQGCTEQAA 89 Query: 62 RIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHF 120 +DA+L +L ++ + ++ + LDV V++ VE AK Sbjct: 90 ALDALLLPLLDRKFAEISPIEHSIMWIGAFELQHCLDVPWRVVLNECVELAKEFGGTDGH 149 Query: 121 A 121 Sbjct: 150 K 150 >gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB [Aggregatibacter segnis ATCC 33393] gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB [Aggregatibacter segnis ATCC 33393] Length = 102 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Query: 39 RLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-D 97 + + D R + T+ + ++ + L L + +LR++V ++ + D Sbjct: 4 QDMKGVDTPYFRKLFRQTVENVEAVERTMQGYLDRGLEELDPIEKAILRLAVYELQFEAD 63 Query: 98 VADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 V V++ A+E AK + K +N +L + Sbjct: 64 VPYKVVINEAIEVAKVFGADES-HKYINGVLDK 95 >gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL] gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL] Length = 134 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%) Query: 12 SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L + S + + D+ + ++ ++ RID++++ Sbjct: 1 MKILYAYRFEDGSQDIIEFYKKFRELNQDEDFRDIDEEYLEKLLKGVIQNQQRIDSLIEK 60 Query: 70 VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L R +L+RV+V ++L+ DV +D AV+ + VN I Sbjct: 61 YSKDWPLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLS-NIFGIEKAPSFVNGI 119 Query: 128 LRR 130 L R Sbjct: 120 LGR 122 >gi|297466640|ref|XP_612659.4| PREDICTED: NOP2/Sun domain family, member 7 [Bos taurus] gi|297475794|ref|XP_002688276.1| PREDICTED: NOP2/Sun domain family, member 7 [Bos taurus] gi|296486645|gb|DAA28758.1| NOP2/Sun domain family, member 7 [Bos taurus] Length = 721 Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 65/475 (13%), Positives = 138/475 (29%), Gaps = 60/475 (12%) Query: 10 VSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAV 66 +++++ R S L + D+ R + L++ ++ + Sbjct: 53 LAANI-FQGTRLEKSPEKALIKYGNEPLPSSTESEDESFQRLSYELAFSALKYQDILETI 111 Query: 67 LDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNS 126 L I L L+ V + ++ E E + + Sbjct: 112 LIDSYIFPSTTIPDHLNSLIIVMLYD-FQDRKFQARLLSGNEESIAEVLEVENLLNSFKT 170 Query: 127 ILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDI 186 L ++ I+PE + + L + + V + + Sbjct: 171 KLAAALARCRIKHDALSIYHILPETVRN----QELRASTLPLYAWINTCKISPEEVYYTL 226 Query: 187 ET-----------WAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIP 233 + +K+ AV + + ++++ F + QD S S+ Sbjct: 227 KKNGYNKVKSVLHIDNKVFAVDQHCYDVLIFPSHLKSDLLNIDLFKDYKLIFQDKSRSLA 286 Query: 234 VQLFGTLNNLSVLDLCAAPGGKTAQLIV-------SGAKVTALDVSKRRLEKLRCNLDRL 286 V L N+ L G + + S+ + L+ ++ Sbjct: 287 VHSVKALLNMDDDILMVNTGSWYTVAHMSVLTNNNTSKIFVCGVQSQAKDPDLKNLFTKM 346 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTR--- 332 +I+ K + +L+ CS G H D + Sbjct: 347 GCKNIEILHETFMKLELKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTDLLKDFS 406 Query: 333 ----DTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR--SSPI 386 D + A Q + L + F + +V+ CS+ +++E +V+K L I Sbjct: 407 QGGPSEDKLHVLAQQQYEQLAHAMKFTRAQA-IVYCTCSVYPEENEAIVKKALEFQDHEI 465 Query: 387 PVELVPLNSAYWKSIDMAM-ALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 V+ L+ + LS + + R+ P + +G F L R Sbjct: 466 KVQPYRLSPPVLPLCSLKEIHLSTDKFFRMEPSEI---------TNGCFISVLTR 511 >gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium matruchotii ATCC 14266] gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium matruchotii ATCC 14266] Length = 312 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 12 SHLLSCVMRKRI-SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFV 70 +L + + + + D L I+ L RID V+ Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLARVDITLVAPIAAYTSEIIAGVAEELNRIDDVIAEY 93 Query: 71 LI--SSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L L R + +LRV+V ++++ DV + AVE A + +N++ Sbjct: 94 LAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSG-ASAPAYINAV 152 Query: 128 LRR 130 L Sbjct: 153 LDS 155 >gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822] gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822] Length = 212 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%) Query: 46 QILVRAIVNVTLRFLPRIDAVLDF-VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + I+ R I+ L ++ L R + +LR++VA++L+L+V + Sbjct: 117 REYAVEIIGTVFRRQKEIEQQLATGMVDWQLSRLPKIDRDILRIAVAEMLFLEVPQKVAI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRVSRE 134 + AVE AKR + + + +N +LRRV+ + Sbjct: 177 NEAVEIAKRYSDEEGY-RFINGVLRRVTEQ 205 >gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis Tohama I] gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella parapertussis 12822] gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella bronchiseptica RB50] gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I] gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis] gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50] gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis CS] Length = 154 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 6/114 (5%) Query: 12 SHLLSCVMRKRISLTC---LLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLD 68 + + + T +D D+ S+ D + +++ LR P + Sbjct: 19 LQGVYAWLLRGGEGTQDAGEIDAHLRDAE--DFSEADAQWFKTLLHGVLREAPVLRERFL 76 Query: 69 FVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFA 121 + L +L + ++++ +V ++ AVE AK F Sbjct: 77 PYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFK 130 >gi|304384736|ref|ZP_07367082.1| transcription antitermination factor NusB [Pediococcus acidilactici DSM 20284] gi|304328930|gb|EFL96150.1| transcription antitermination factor NusB [Pediococcus acidilactici DSM 20284] Length = 127 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 11/128 (8%) Query: 8 RLVSSHLLSCVMRKRISLT-CLLDLEYGDSAFRLLSQRDQI--LVRAIVNVTLRFLPRID 64 R + ++ S+ E + D + +V + I+ Sbjct: 2 RESAFKMIFA-----QSVNPDADPEELKKQVLEEFHETDVADPFLDNLVTGVQENVSSIN 56 Query: 65 AVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAK 122 + L ++ R + +L++ +I + +V + ++ A+E AK+ + K Sbjct: 57 ETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTEVPNSVAINEALELAKKY-TDEKARK 115 Query: 123 LVNSILRR 130 +N +L Sbjct: 116 FINGVLSN 123 >gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63] gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile NAP08] gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile NAP07] gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile NAP08] gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile NAP07] Length = 168 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 32/151 (21%) Query: 1 MKSGMN----ARLVSSHLLSCVMRKRI---SLTCLLDLEYGDSAFRLLSQ---------- 43 MK R L+ + + +L +D D++ ++++ Sbjct: 1 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDRVDNFLKDNSEHIINRYKELALQYSK 60 Query: 44 --------------RDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRV 88 D+ + + +ID +++ + ++ R +LR+ Sbjct: 61 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 120 Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 SV +ILYLD + ++ AVE AK +++ Sbjct: 121 SVCEILYLDTPNKVSINEAVELAKIYCDDKS 151 >gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii ATCC 17978] Length = 122 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 2/108 (1%) Query: 24 SLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYSLQ 83 S + ++E A + + D ++ + +DA+L VL + Sbjct: 2 SHNPVHEIEARTRAENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDREIDALDGVEL 61 Query: 84 QLLRVSVAQIL-YLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRR 130 LR+ ++ +L++ V+D A+E AK K +N +L R Sbjct: 62 ATLRLGAYELRDHLEIPYRVVLDEAIELAK-HFGGADSHKYINGVLDR 108 >gi|42519423|ref|NP_965353.1| hypothetical protein LJ1551 [Lactobacillus johnsonii NCC 533] gi|227890288|ref|ZP_04008093.1| transcription antitermination protein NusB [Lactobacillus johnsonii ATCC 33200] gi|268319198|ref|YP_003292854.1| transcription antitermination factor NusB [Lactobacillus johnsonii FI9785] gi|41583711|gb|AAS09319.1| hypothetical protein LJ_1551 [Lactobacillus johnsonii NCC 533] gi|227849102|gb|EEJ59188.1| transcription antitermination protein NusB [Lactobacillus johnsonii ATCC 33200] gi|262397573|emb|CAX66587.1| transcription antitermination factor NusB [Lactobacillus johnsonii FI9785] gi|329667052|gb|AEB93000.1| hypothetical protein LJP_0669 [Lactobacillus johnsonii DPC 6026] Length = 133 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 9/128 (7%) Query: 8 RLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI-LVRAIVNVTLRFLPRIDAV 66 R ++ + + + LT E A + L +D +VN L +D Sbjct: 7 RRIAMQAIY--LANQGKLTDA--EEVCQKALKALELKDFPDYSTELVNGVLANKEALDEQ 62 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123 L L L R +L V++ ++ V A ++ A+ ++ K Sbjct: 63 LSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIDPVAALNEALNLCDEF-SSKESKKF 121 Query: 124 VNSILRRV 131 +N +L Sbjct: 122 INGLLANF 129 >gi|227496173|ref|ZP_03926479.1| transcription antitermination protein NusB [Actinomyces urogenitalis DSM 15434] gi|226834287|gb|EEH66670.1| transcription antitermination protein NusB [Actinomyces urogenitalis DSM 15434] Length = 155 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 13/128 (10%) Query: 2 KSGMNARLVSSHLLSCVMRKR--------ISLTCLLDLEYGDSAFRLLSQRDQILVRAIV 53 + AR + +L ++ +L L SA + R I+ Sbjct: 12 TARTKARRRAIEILFEADQRGLLRAGEAAENLRALAAERAVHSANHTEAP---AYTREIL 68 Query: 54 NVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQA 111 L +ID ++ SL R + + RV+ +I+Y DV +D A A Sbjct: 69 TGVADHLEQIDEHIETYSQGWSLTRMPAVDRAIARVTTWEIVYNDDVDVPVALDEAQTLA 128 Query: 112 KRDKENRH 119 K + Sbjct: 129 KMLSTDDS 136 >gi|239612586|gb|EEQ89573.1| NOL1/NOP2/sun domain-containing protein [Ajellomyces dermatitidis ER-3] Length = 555 Score = 65.7 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 32/179 (17%) Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 R + + + KK+ L PC+ + D D ++K + Q Sbjct: 343 RDDIPRLALPSSHNPNPRSKKMKRTALAPVPCTHADPAADEEEPTPAIDHDRLIKLSNLQ 402 Query: 345 RKLLLQGISFVKPGGIVV-FSNCSLDKQDSEEVVQKVLR--------------------- 382 +++ SF P V +S CS+ Q++E VV + L+ Sbjct: 403 TRIIEHAFSF--PAARRVTYSTCSIHAQENEVVVSRALKSPVAQRRGWRILSRSEQVEGL 460 Query: 383 SSPIPVELVPLNSAYWKSIDMAMALSP-EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + S + + + E +R P+ G GFF R Sbjct: 461 RNWKYRGIKSEKPGDGASESLDLTGTELEACLRCWPND-------EEGTGGFFVAGFVR 512 >gi|295657461|ref|XP_002789299.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226283969|gb|EEH39535.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 555 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 50/178 (28%), Gaps = 30/178 (16%) Query: 285 RLHLYAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQ 344 R + + M Y KK V D D ++K + Q Sbjct: 340 RDDVPRLALPTMSGPSYWSKKRKRTVRAQMDGVCFALGDPEDQSPINVDYDRLLKLSNLQ 399 Query: 345 RKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKS 400 +++ +F V +S CS+ Q++E VV +VL+ L Sbjct: 400 TRIIEHAFNFPAAT-RVTYSTCSIHAQENEVVVSRVLKSPVARRRGWRILSRSEQVQGLR 458 Query: 401 IDMAMALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + P+G +R P+ G GFF R Sbjct: 459 NWKHRGIQPDGPGDGEQGSWHLTEVERDACLRCWPND-------EQGTGGFFVAGFVR 509 >gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725] gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725] Length = 134 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 5/123 (4%) Query: 12 SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L + + + + D+ + ++ ++ +ID +++ Sbjct: 1 MKILYAYRFENNTQDIIEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQKIDNIIEK 60 Query: 70 VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L R +L+R++V ++L+ +V +D AV+ A VN I Sbjct: 61 YSKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119 Query: 128 LRR 130 L R Sbjct: 120 LGR 122 >gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26] gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP 107932] gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42] gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC 43255] gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55] gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34] gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79] gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196] gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291] gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58] gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196] gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291] Length = 168 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 32/151 (21%) Query: 1 MKSGMN----ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAFRLLSQ---------- 43 MK R L+ + + L +D D++ ++++ Sbjct: 1 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 60 Query: 44 --------------RDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRV 88 D+ + + +ID +++ + ++ R +LR+ Sbjct: 61 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 120 Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 SV +ILYLD + ++ AVE AK +++ Sbjct: 121 SVCEILYLDTPNKVSINEAVELAKIYCDDKS 151 >gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae DGI18] gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae FA6140] gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae PID24-1] Length = 161 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 5/123 (4%) Query: 1 MKS-GMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK+ +R ++ + + R + + S F + D+ L + T Sbjct: 21 MKTTRRRSRELAVQAVYQSLINRTAAPEIAKNIREMSDFA---KADEELFNKLFFGTQTN 77 Query: 60 LPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENR 118 + +L + +L + ++ + + +++ A+E K Sbjct: 78 AADYIQKIRPLLDRDEKDLNPIERAVLLTACHELSAMPETPYPVIINEAIEVTKTFGGTD 137 Query: 119 HFA 121 Sbjct: 138 GHK 140 >gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii str. Iowa] gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa] Length = 156 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 58/142 (40%), Gaps = 14/142 (9%) Query: 7 ARLVSSHLLSC-VMRKRISLTC----LLDLEYGDSAFRLLSQRDQ-----ILVRAIVNVT 56 AR+ + + +++ + +L +++ L + + + +V + Sbjct: 12 ARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLSISHFKMLVKLV 71 Query: 57 LRFLPRIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 + ++D ++D L L+ LLRVS+ ++L+ V++ + A Sbjct: 72 FENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKVVINEYTDIAND 131 Query: 114 DKENRHFAKLVNSILRRVSREK 135 N H VNS+L ++++E Sbjct: 132 M-LNEHEIGFVNSVLDKIAKEH 152 >gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 180 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRIS-----LTCLLDLEYGDSAFRLLSQRDQILVRAIVNVT 56 S AR + + ++ + + +L+ +A + I+ Sbjct: 7 SSRTRARKRAIDTIFEADQRGRAESAAGINLMLEERKEITAAQTPLPE---YSIEIIEGV 63 Query: 57 LRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRD 114 L ID +LD + R + +LRV+ +I++ + V D +D AV ++ Sbjct: 64 RDHLIEIDDLLDTHTTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRITRKI 123 Query: 115 KENRHFA 121 + A Sbjct: 124 STDDSPA 130 >gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques L2-14] Length = 139 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 6/126 (4%) Query: 8 RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R +L + + ++ + S + +D+ ++ L ID + Sbjct: 7 REHIFKMLFQIEFNDPQEMPEQIEYYF--STLEDAADKDKEYIKRKYAAVLEKTEEIDEL 64 Query: 67 LDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHFAKLV 124 ++ R +LR++V ++ + D V ++ AVE K + + Sbjct: 65 INANAKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVGVAINEAVELTKTFSSDE-APSFI 123 Query: 125 NSILRR 130 N +L + Sbjct: 124 NGVLGK 129 >gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC 7425] gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425] Length = 209 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 12/133 (9%) Query: 7 ARLVSSHLLS----CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 +R + + ++ V R + L L + + + + I+ L Sbjct: 76 SRAMVTEAITLAETAVNRLGMVLD--LPEFVQLANQQQV----RDFSLDILKQVLTHRTA 129 Query: 63 IDAVLD-FVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFA 121 ID +L+ ++ R + +LR++VA+ILYL ++ AVE AKR + + Sbjct: 130 IDHLLETALVDWQFNRLAQIDRNILRIAVAEILYLKTPTQVTINEAVELAKRYSDEDGY- 188 Query: 122 KLVNSILRRVSRE 134 + VN +LRR Sbjct: 189 RFVNGVLRRTIPH 201 >gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630] gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB) [Clostridium difficile] Length = 169 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 32/151 (21%) Query: 1 MKSGMN----ARLVSSHLLSCVMRKRISLTCL---LDLEYGDSAFRLLSQ---------- 43 MK R L+ + + L +D D++ ++++ Sbjct: 2 MKKDRAQKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSK 61 Query: 44 --------------RDQILVRAIVNVTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRV 88 D+ + + +ID +++ + ++ R +LR+ Sbjct: 62 NTNLKLEDTEIEDVIDKKYINTVCKALKENHDKIDELINKHAKNWTVDRMPKVDVSILRL 121 Query: 89 SVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 SV +ILYLD + ++ AVE AK +++ Sbjct: 122 SVCEILYLDTPNKVSINEAVELAKIYCDDKS 152 >gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7] gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7] Length = 147 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 1 MK-SGMNARLVSSHLLSCV-MRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVN 54 M + + R + L + + + +S + S L+ + + + +V+ Sbjct: 1 MSLTRRDIREKALQSLFQLSVNEDLSKEEAMQHALI-SENDLIDEVETVLVPSYLDMLVS 59 Query: 55 VTLRFLPRIDAVLDFVLIS-SLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAK 112 + ID + L + SL R + ++RV++ +++Y DV D ++ A+E K Sbjct: 60 GVMEKQDEIDEKIKTHLENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEALEITK 119 Query: 113 RDKENRHFA 121 + + + Sbjct: 120 KYSDEKSRK 128 >gi|226295065|gb|EEH50485.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 555 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 30/124 (24%) Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLN 394 K + Q++++ +F V +S CS+ Q++E VV +VL+ L Sbjct: 394 KLSNLQKRIIEHAFNFPAAT-RVTYSTCSIHAQENEVVVSRVLKSPVARRRGWRILSRSE 452 Query: 395 SAYWKSIDMAMALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAV 436 + P+G +R P+ G GFF Sbjct: 453 QVQGLRNWKHRGIHPDGSGDGEQGSWHLTEAERDACLRCWPND-------EQGTGGFFVA 505 Query: 437 ALRR 440 R Sbjct: 506 GFIR 509 >gi|225677768|gb|EEH16052.1| NOL1/NOP2/Sun domain family protein [Paracoccidioides brasiliensis Pb03] Length = 555 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 30/124 (24%) Query: 339 KSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLN 394 K + Q++++ +F V +S CS+ Q++E VV +VL+ L Sbjct: 394 KLSNLQKRIIEHAFNFPAAT-RVTYSTCSIHAQENEVVVSRVLKSPVARRRGWRILSRSE 452 Query: 395 SAYWKSIDMAMALSPEG------------------WIRITPDMLEKIDGVSSGMDGFFAV 436 + P+G +R P+ G GFF Sbjct: 453 QVQGLRNWKHRGIHPDGSGDGEQGSWHLTEAERDACLRCWPND-------EQGTGGFFVA 505 Query: 437 ALRR 440 R Sbjct: 506 GFIR 509 >gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis 108] gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis 108] Length = 134 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%) Query: 12 SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L + + + + D+ + ++ ++ RID +++ Sbjct: 1 MKILYAYRFEDDTQDIIEFYKKFRELNQDEDFKDIDEKYLERLLKGVIQNQQRIDNLIEK 60 Query: 70 VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L R +L+R++V ++L+ +V +D AV+ A VN I Sbjct: 61 YSKDWPLSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119 Query: 128 LRR 130 L R Sbjct: 120 LGR 122 >gi|313104313|sp|Q8NE18|NSUN7_HUMAN RecName: Full=Putative methyltransferase NSUN7; AltName: Full=NOL1/NOP2/Sun domain family member 7 Length = 718 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + L DQ R + L++ ++ +L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L+ V + V+ E +E + L Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181 ++ I+PE +++ K + + Y + Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 I+ K+ AV + + ++++ F + QD S S+ V Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286 L N+ L G + G + A D + L ++ Sbjct: 289 LLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334 +I+ + K + +L+ CS G H D + +D Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402 Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D + A Q + L + F K VV+ CS+ +++E VV+K L Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ + L I+++ D +++ +G F L R Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507 >gi|194384370|dbj|BAG64958.1| unnamed protein product [Homo sapiens] Length = 771 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + L DQ R + L++ ++ +L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L+ V + V+ E +E + L Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181 ++ I+PE +++ K + + Y + Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 I+ K+ AV + + ++++ F + QD S S+ V Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286 L N+ L G + G + A D + L ++ Sbjct: 289 LLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334 +I+ + K + +L+ CS G H D + +D Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402 Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D + A Q + L + F K VV+ CS+ +++E VV+K L Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ + L I+++ D +++ +G F L R Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507 >gi|187828635|ref|NP_078953.3| putative methyltransferase NSUN7 [Homo sapiens] Length = 718 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + L DQ R + L++ ++ +L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L+ V + V+ E +E + L Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181 ++ I+PE +++ K + + Y + Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 I+ K+ AV + + ++++ F + QD S S+ V Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286 L N+ L G + G + A D + L ++ Sbjct: 289 LLNMDDDVLMVNTGSWYTVSHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334 +I+ + K + +L+ CS G H D + +D Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402 Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D + A Q + L + F K VV+ CS+ +++E VV+K L Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ + L I+++ D +++ +G F L R Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507 >gi|320450059|ref|YP_004202155.1| transcription antitermination factor NusB [Thermus scotoductus SA-01] gi|320150228|gb|ADW21606.1| transcription antitermination factor NusB [Thermus scotoductus SA-01] Length = 151 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 8/137 (5%) Query: 7 ARLVSSHLLSCVMRKRISLTCLLDLEYG------DSAFRLLSQRDQILVRAIVNVTLRFL 60 AR ++ L + + L DS L Q R ++ Sbjct: 5 ARELAMRALFAHTQGGVDLEEAFRHALEEMGGEEDSYGDSLDQEGVAFARRLLEGYKAHA 64 Query: 61 PRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRH 119 +D VL + + + +LR++ ++LY ++++AV+ A R H Sbjct: 65 EEVDQVLRDTVEGWDFAQMSKTDLTVLRLAAYEMLYEPTPFAPLIEVAVKIANRY-GGEH 123 Query: 120 FAKLVNSILRRVSREKI 136 VN +L R+ R Sbjct: 124 SGAFVNGVLGRLYRRIQ 140 >gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus MTCC 5462] Length = 145 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 10/117 (8%) Query: 1 MKSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ---ILVRAIVNVTL 57 M + M +R H + + + ++ + + +D + A+V L Sbjct: 17 MTNKMESR----HAIREAAFRALFALATNPEADKNAVYAEVLPKDTEVPSYLTALVEGVL 72 Query: 58 RFLPRIDAVLDFVLISS--LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQA 111 +DA L L L R +LR+ + +I Y + + + A ++ A+ A Sbjct: 73 ANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEAINLA 129 >gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp. lactis KF147] Length = 323 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66 L+ S L ++ +L+ D+ +V+ L ++A Sbjct: 199 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 255 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L S R Q +L+VS +ILY + D V+ AVE +K D + ++ + Sbjct: 256 ISKYLAKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 314 Query: 125 NSILRRV 131 N +L Sbjct: 315 NGVLTNF 321 >gi|119613378|gb|EAW92972.1| hypothetical protein FLJ14001, isoform CRA_c [Homo sapiens] Length = 718 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 140/472 (29%), Gaps = 63/472 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + L DQ R + L++ ++ +L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L+ V + V+ E +E + L Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181 ++ I+PE +++ K + + Y + Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 I+ K+ AV + + ++++ F + QD S S+ V Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286 L N+ L G + G + A D + L ++ Sbjct: 289 LLNMDDDVLMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334 +I+ + K + +L+ CS G H D + +D Sbjct: 343 GCKNIEILHEKFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402 Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D + A Q + L + F K VV+ CS+ +++E VV+K L Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ + L I+++ D +++ +G F L R Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507 >gi|154282293|ref|XP_001541942.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150410122|gb|EDN05510.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 556 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 76/527 (14%), Positives = 151/527 (28%), Gaps = 119/527 (22%) Query: 11 SSHLLSCVMRKRISL-TCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 ++ +L S + + + A + V A++ T ++ + V++ Sbjct: 7 AASVLYRDSGSGGSFKSRVYKSKLRSPARQ---------VYALITETAKWDILLKEVVEN 57 Query: 70 VLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILR 129 + K L +L V + + + + + A ++R A+ V S + Sbjct: 58 ANFLPVEPKLTPLLSILLVHDFLLTKKGIVAPS--NHPLRLAIERHKSRIKAEFVKSRVH 115 Query: 130 RVSREKIELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETW 189 R EL + ++ + R+ + + L + + + Sbjct: 116 RQCASIEELEALVKRQKNA-SGREDSIFGPPRWARINNVITSLDEQLKTTFSAYKLVHSL 174 Query: 190 AHKLNAVMLPTGGIRLKELPESIVS------LPGFAEGVWWVQDASASIPVQ----LFGT 239 + + ++ + +G+ +QD ++ P Sbjct: 175 SELVATTPDSLYQDPHIPDLVAVSQDAQLASSAAYKKGMIILQDKASCFPAYLLLGSDAA 234 Query: 240 LNNLSVLDLCAAPGGKTAQ------------------LIVSGAKVTALDVSKRRLEKLRC 281 +LD CAAPG KT + + DVS R L+ Sbjct: 235 KWKGDLLDACAAPGNKTTHLASLLCSSSKSHFGDRIHSTQDKFTIFSCDVSPNRSRILQR 294 Query: 282 NLDRLHLYAEDIIEMDAFDYCPKKLFDA-------VLVDAPCSSTGTIRR---------- 324 + + + D+ D +L+D CS TG + R Sbjct: 295 MVAIAGAE-TMVSVLPGQDFLALSPDDKRFQDVTGILLDPSCSGTGIVGRDDMPCLALPS 353 Query: 325 ----HPDVLWTR------------------------DTDDIVKSACFQRKLLLQGISFVK 356 H + + D + K + Q +++ F Sbjct: 354 LQDPHDRGMKRKRHAPTPLPTLGRPAASEPQNTTDIDPGRLTKLSNLQTRIVEHAFKF-- 411 Query: 357 PGGIVV-FSNCSLDKQDSEEVVQKVLR------------SSPIPVELVP-------LNSA 396 P V +S CS+ Q++E V+ +VL+ S VE + + Sbjct: 412 PNATRVTYSTCSIHVQENEVVIARVLKSPVAQRRGWRIVSRNEQVEGLRKWKYRGITHGE 471 Query: 397 YWKSIDMAMALSP---EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L+ EG +R P+ E GFF R Sbjct: 472 SGDGGGEIWDLTETEREGCLRCWPNDKEC-------TGGFFVAGFVR 511 >gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp. lactis CV56] Length = 323 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66 L+ S L ++ +L+ D+ +V+ L ++A Sbjct: 199 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 255 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L S R Q +L+VS +ILY + D V+ AVE +K D + ++ + Sbjct: 256 ISKYLTKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 314 Query: 125 NSILRRV 131 N +L Sbjct: 315 NGVLTNF 321 >gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis Il1403] gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp. lactis Il1403] Length = 323 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66 L+ S L ++ +L+ D+ +V+ L ++A Sbjct: 199 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 255 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L S R Q +L+VS +ILY + D V+ AVE +K D + ++ + Sbjct: 256 ISKYLTKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 314 Query: 125 NSILRRV 131 N +L Sbjct: 315 NGVLTNF 321 >gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog; Short=Protein nusB Length = 192 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 14/127 (11%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLS-QRDQI-------LVRAIVNVTLRFLPRIDAV 66 L+ S L ++ +L+ D+ +V+ L ++A Sbjct: 68 LAQAENNAQS---QLSELLKNTKRFVLNYDNDRPEDLEAPEYFTQLVDGVLDKKEDLEAN 124 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLV 124 + L S R Q +L+VS +ILY + D V+ AVE +K D + ++ + Sbjct: 125 ISKYLTKTWSFSRLTLVEQAILQVSSYEILYTETPDVVAVNEAVELSK-DFSDEKSSRFI 183 Query: 125 NSILRRV 131 N +L Sbjct: 184 NGVLTNF 190 >gi|301607853|ref|XP_002933499.1| PREDICTED: putative methyltransferase NSUN7-like [Xenopus (Silurana) tropicalis] Length = 692 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 67/467 (14%), Positives = 144/467 (30%), Gaps = 60/467 (12%) Query: 22 RISLTCLLDLEYGDSAFRLLSQRD---QILVRAIVNVTLRFLPRIDAVL---DFVLISSL 75 + ++ DS L S RD Q + TL++ ++ +L F L Sbjct: 36 KKPPDRIVVKYGNDSGKSLSSLRDEKYQRWAYELAFNTLKYQDLLETILLDSGFYHSQPL 95 Query: 76 PRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135 P + L+ V + + + + + + ++R + Sbjct: 96 PD---EMTSLVMVMLYDFQDRKFQPRCLAHTVETIEEVTEVEKLLCSYKTRLSAALARSR 152 Query: 136 IELLQRIAGISIIPEWFKERLENFYGKERVLAISDACISPLYIDLTVKFDIETWAHKLNA 195 I+ + I+PE +++ L ++ E + + Sbjct: 153 IKHAIP-SIDFILPEGVRKQ--EQRSSTVPLYAWVNTAKTSTTEVCDGLKNEGFTKTDSP 209 Query: 196 VMLPTGGIRLKELPESI-----------VSLPGFAEGVWWVQDASASIPVQLFGTLNN-- 242 V L + + + + +L F +QD + + V L N Sbjct: 210 VDLVGYQYYMDKQCQDVLVFPQYLKDKLSNLELFIHYRLVLQDKAHILSVHSVRALMNLD 269 Query: 243 LSVLDLCAAPGGKTAQL-----IVSGAKVTALDVSKRRLEKLRCNLDRLHLYAEDIIE-- 295 ++ G A + + S+ R L + +++ Sbjct: 270 DDIIVAAPCSGYILAHMSVLTNQNACRIFVCGIKSEARERALLELFADMGCKNIKLLKES 329 Query: 296 -MDAFDYCPKKLFDAVLVDAPCSSTG--------TIRRHPDVLWTRD-------TDDIVK 339 D P+ V++ P SS + +H D +D TD + Sbjct: 330 FTDLDPSDPRLQKAKVILLLPQSSGSGVSDPVQFVLNQHGDTSLLQDFSQGSVGTDKLNA 389 Query: 340 SACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPVELVP--LNSAY 397 + Q L ++F K +V+ CS+ +++E+V+ + L P +++ + S Sbjct: 390 LSKQQVTELTHAMTFNKVQA-LVYCTCSVYHEENEDVINQALGQKPESNKILTYRIGSPV 448 Query: 398 WKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLIQP 444 + L + +I++ P +GFF L + P Sbjct: 449 IPLSSSELTLLSDKFIKVQPSET---------TNGFFLAVLTKEPDP 486 >gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance protein B homolog) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance protein B homolog) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 208 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 7/112 (6%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + AR + +L + + + + R I++ Sbjct: 36 STRTKARKQALDVLFQADLR----NEAVHRTMARRTEQG-EPALRDFTRQILDGYSEHGH 90 Query: 62 RIDAVLDFVL--ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQA 111 I+ +D L +L R + L R++V ++ + + + A+E A Sbjct: 91 EINEHIDRALTGDWTLERMSRVDRNLARIAVWELDFTTIDLKVAISEAMELA 142 >gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1] gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1] Length = 252 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 46/136 (33%), Gaps = 12/136 (8%) Query: 6 NARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQI----------LVRAIVNV 55 AR + L + + E+ + ++ R + ++ Sbjct: 39 KARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMRE 98 Query: 56 TLRFLPRIDAVLDFVLISSLPRKKYSLQQLLRVSVAQIL-YLDVADYAVVDLAVEQAKRD 114 + ++A++ L ++ + +L + ++ L + V+D A++ Sbjct: 99 IPEQITDLEALIAQHLDRAIDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKL-NTH 157 Query: 115 KENRHFAKLVNSILRR 130 KL+N+++ + Sbjct: 158 FGATDAHKLINAVMDK 173 >gi|10432785|dbj|BAB13847.1| unnamed protein product [Homo sapiens] Length = 186 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 291 EDIIEMDAFDYCPKKLFDAVLVDAPCSST--GTIRRHPDVLWTRDTDDIVKSACFQRKLL 348 + + +D VLVD PC++ ++ + Q +LL Sbjct: 35 VTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLL 94 Query: 349 LQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR----SSPIPVELVPLNSAYWKSID-M 403 G+ KPGG VV+S CSL +E VVQ + I V++ L +D Sbjct: 95 AAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTF 154 Query: 404 AMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRRLI 442 S + + P+++ + +RRL Sbjct: 155 CFFSSCQVGELVVPNLMANFGP-------MYFCKMRRLT 186 >gi|116629407|ref|YP_814579.1| transcription termination factor [Lactobacillus gasseri ATCC 33323] gi|311110942|ref|ZP_07712339.1| transcription antitermination factor NusB [Lactobacillus gasseri MV-22] gi|116094989|gb|ABJ60141.1| Transcription termination factor [Lactobacillus gasseri ATCC 33323] gi|311066096|gb|EFQ46436.1| transcription antitermination factor NusB [Lactobacillus gasseri MV-22] Length = 133 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 9/128 (7%) Query: 8 RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAV 66 R ++ + + + + + IVN L +D Sbjct: 7 RRIAMQAIYLANQGNLTNAEEVCQKALKALELKSFPD----YSTEIVNGVLANKKALDEQ 62 Query: 67 LDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENRHFAKL 123 L L L R +L V++ ++ V A ++ A+ ++ K Sbjct: 63 LSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEF-SSKESKKF 121 Query: 124 VNSILRRV 131 VN +L Sbjct: 122 VNGLLANF 129 >gi|313894565|ref|ZP_07828129.1| transcription antitermination factor NusB [Veillonella sp. oral taxon 158 str. F0412] gi|313440961|gb|EFR59389.1| transcription antitermination factor NusB [Veillonella sp. oral taxon 158 str. F0412] Length = 134 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 ++ AR + +L + A D+ +I+ + Sbjct: 5 RNRREARQYAFQMLYANEFHNDQNDVQFPEGHIQKAM------DKAYANSIIQGVIATAE 58 Query: 62 RIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLDVA--DYAVVDLAVEQAKRDKENR 118 +IDA L + + +LR++V ++ ++ A++ AK + Sbjct: 59 KIDADLQPFCKSRKVANLDKVDRAILRIAVWEMTNEVEPLEPSIAINEAIQLAKEFGSDA 118 Query: 119 HFA 121 + Sbjct: 119 SYK 121 >gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 5_1_63FAA] gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae bacterium 5_1_63FAA] Length = 171 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MKSGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK R +L CV ++ ++L + ++++ Q + + Sbjct: 35 MK-RSEVREHIFRILFCVEFCEKEEFEDQVELYF--HGHENINEKTQKEITEKTENLIEH 91 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 L ID + +L R + +LR++ +IL + V ++ AVE AK+ N Sbjct: 92 LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYC-N 150 Query: 118 RHFAKLVNSILRRVSREK 135 A +N +L ++ ++ Sbjct: 151 EKAAPFINGVLSKIGQDM 168 >gi|294883902|ref|XP_002771097.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239874335|gb|EER02913.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 198 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 365 NCSLDKQDSEEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSPEGWIRITPD--MLEK 422 CS+ ++ E V+ +L++ + V + + + + P + Sbjct: 14 TCSMAVEEDEMVIDAILKARNVRVVAFDDVVNFG-----SEGFTSFRGKQFHPSLKHSRR 68 Query: 423 IDGVSSGMDGFFAVALRR 440 MDGFF L++ Sbjct: 69 FFPHVHNMDGFFVCKLQK 86 >gi|310791572|gb|EFQ27099.1| NOL1/NOP2/sun family protein [Glomerella graminicola M1.001] Length = 580 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Query: 341 ACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLR---SSPIPVELVPLNSAY 397 A FQ LLL + F + +S CS+ +++E VV K L + +++P Sbjct: 391 AGFQLTLLLHAMKF-PSAKKISYSTCSIHAEENEGVVIKALASEVARERGWKILPREKQV 449 Query: 398 WKSIDMAMALSPE---GWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + PE G + + G G+ GFF A R Sbjct: 450 RGMREWPVRGLPEAAGGDKAVAEACIRTYKGDGHGVMGFFVAAFVR 495 >gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1] gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1] Length = 167 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%) Query: 1 MKSGMNARLVSSHLLSCVMR-KRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRF 59 MK R +L CV ++ ++L + ++++ Q + + Sbjct: 31 MK-RSEVREHIFRILFCVEFCEKEEFEDQVELYF--HGHENINEKTQKEITEKTENLIEH 87 Query: 60 LPRIDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKEN 117 L ID + +L R + +LR++ +IL + V ++ AVE AK+ N Sbjct: 88 LDEIDEQISAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELAKKYC-N 146 Query: 118 RHFAKLVNSILRRVSREK 135 A +N +L ++ ++ Sbjct: 147 EKAAPFINGVLSKIGQDM 164 >gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f] gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f] Length = 146 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 48 LVRAIVNVTLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILY-LDVADYAVVD 105 +V + L ID + + R + +LR++V ++ + DV D V+D Sbjct: 24 YASDLVEGVVAHLGDIDRHIASHAQGWAIDRMPPVDRNILRIAVLELFWRTDVPDGVVID 83 Query: 106 LAVEQAKRDKENRHFA 121 AV AK R A Sbjct: 84 EAVRLAKTISTERSPA 99 >gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708] gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708] Length = 213 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 37 AFRLLSQRDQILVRAIVNVTLRFLPRIDAVL-DFVLISSLPRKKYSLQQLLRVSVAQILY 95 + + + I+ ID ++ D ++ + R + +L+++ A++ + Sbjct: 112 QLANQDKEVRNYAKEIIITVNENRNVIDQIISDALVDWQVTRLAQIDRDILQIAAAEMKF 171 Query: 96 LDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRVSREKI 136 + V ++ AVE AKR + + +N +LRRV+ +K Sbjct: 172 MGVPASIAINEAVELAKRYSGDEG-HRFINGVLRRVTEQKQ 211 >gi|114593754|ref|XP_001147079.1| PREDICTED: putative methyltransferase NSUN7 isoform 2 [Pan troglodytes] Length = 718 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 71/472 (15%), Positives = 139/472 (29%), Gaps = 63/472 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + L DQ R + L++ ++ +L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSLSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L V + V+ E +E + L Sbjct: 113 IFPSTTIPDHLSSLFIVMLYD-FQDRKFQTRVLSDNEEPISEVQEVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181 ++ I+PE +++ K + + Y + Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 I+ K+ AV + + ++++ F + QD S S+ V Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286 L N+ L G + G + A D + L ++ Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKI 342 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334 +I+ + K + +L+ CS G H D + +D Sbjct: 343 GCKNIEILHETFINIDSKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402 Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D + A Q + L + F K VV+ CS+ +++E VV+K L Sbjct: 403 QGGISVDKLHVLAQQQYEQLTHAMKFTKAQA-VVYCTCSVFPEENEAVVKKALE-----F 456 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ + L I+++ D +++ +G F L R Sbjct: 457 QDLGNKGQPYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507 >gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1] gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1] Length = 147 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Query: 8 RLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQ-ILVRAIVNVTLRFLPRIDA 65 R+ + L R +L L + + + RD +++ + IDA Sbjct: 13 RVAALQYLFAWSMNRPRNLAEDLRVFFENMEQ----PRDHYAFGEELIHGVIEHSDDIDA 68 Query: 66 VLDFVLISS-LPRKKYSLQQLLRVSVAQILYL-DVADYAVVDLAVEQAKRDKENRHFAKL 123 + + + R +LR+++ +IL+ D+ ++ A++ +K+ N + Sbjct: 69 RIKGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDLSKQF-SNADAKRF 127 Query: 124 VNSILRR 130 +N IL R Sbjct: 128 INGILDR 134 >gi|326773300|ref|ZP_08232583.1| transcription antitermination factor NusB [Actinomyces viscosus C505] gi|326636530|gb|EGE37433.1| transcription antitermination factor NusB [Actinomyces viscosus C505] Length = 163 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 6/124 (4%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQ----ILVRAIVNVTL 57 + AR + +L ++ + + + + R +S + I++ Sbjct: 21 TARTKARRRAIEILFEADQRGMLSSEGSEELRSFAQLRAVSSANHTEAPAYTGEILDGLC 80 Query: 58 RFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDK 115 L +D + +L R + + RV+ +I+Y D V VD A+ ++ Sbjct: 81 DHLGDVDETIQTYAQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAMTLSRMLS 140 Query: 116 ENRH 119 + Sbjct: 141 TDES 144 >gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae GA41301] Length = 121 Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 47 ILVRAIVNVTLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + +V+ +D + L ++ R + LLR+ V +I D V Sbjct: 30 AFLIDLVSDVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFDTPQLVAV 89 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRRV 131 + A+E AK D ++ A+ +N +L + Sbjct: 90 NEAIELAK-DFSDQKSARFINGLLSQF 115 >gi|282850892|ref|ZP_06260266.1| transcription antitermination factor NusB [Lactobacillus gasseri 224-1] gi|282557844|gb|EFB63432.1| transcription antitermination factor NusB [Lactobacillus gasseri 224-1] Length = 133 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 9/133 (6%) Query: 3 SGMNARLVSSHLLSCVMRKR-ISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLP 61 + R ++ + + + + + IVN L Sbjct: 2 THHEMRRIAMQAIYLANQGNLTNAEEVCQKALKALELKSFPD----YSTEIVNGVLANKK 57 Query: 62 RIDAVLDFVLIS--SLPRKKYSLQQLLRVSVAQILYLDV-ADYAVVDLAVEQAKRDKENR 118 +D L L L R +L V++ ++ V A ++ A+ ++ Sbjct: 58 ALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDEF-SSK 116 Query: 119 HFAKLVNSILRRV 131 K VN +L Sbjct: 117 ESKKFVNGLLANF 129 >gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium glutamicum R] gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R] Length = 212 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 5/166 (3%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRA-IVNVTLRFLP 61 S AR+ + +L + + ++D + + I+N L Sbjct: 13 SRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDTNPIVAPVAEYTETIINGVAVELD 72 Query: 62 RIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENR 118 +D L + +L R + +LRV+ +++Y DV + AVE A ++ Sbjct: 73 TLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVPVTTAIVEAVEIASEYSGDK 132 Query: 119 HFAKLVNSILRRVSREKIELLQRIAGISIIPEWFKERLENFYGKER 164 A +N+ L ++ + L +R A + E L++ Sbjct: 133 SSA-YINATLDAMASKVETLRERAANPEAVLAEASESLDDAPVAPW 177 >gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174] gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174] Length = 180 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 7/118 (5%) Query: 8 RLVSSHLLS--CVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDA 65 R LL + + L ++DQ ++ L L ID Sbjct: 7 REHIFKLLFMTQFNSENEMSDQV---SMYFDTLGELEEKDQEAIQNKYQHILEHLDEIDQ 63 Query: 66 VLDFVLI-SSLPRKKYSLQQLLRVSVAQI-LYLDVADYAVVDLAVEQAKRDKENRHFA 121 +L+ R LR++V ++ + +V ++ AVE AK + Sbjct: 64 ILNEYSRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELAKLFGGEDSGS 121 >gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 208 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 12/128 (9%) Query: 2 KSGMNARLVSSHLLSCVMRKRISLT-CLLDLEYGDSA-----FRLLSQRDQILVRAIVNV 55 S AR ++ ++ ++ + L + L + I+ Sbjct: 8 TSRTKARKRAADVVYEADQRGMGSNPDALRDLLRERRVITAAQTPLPE----FSLRIIGG 63 Query: 56 TLRFLPRIDAVLDFVLISS-LPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKR 113 L RID+++ L R ++RV+V ++L D V+ V+D AV + Sbjct: 64 VADNLRRIDSLISAHARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAVSIVRS 123 Query: 114 DKENRHFA 121 + A Sbjct: 124 ISTDTSPA 131 >gi|145230151|ref|XP_001389384.1| NOL1/NOP2/sun domain protein [Aspergillus niger CBS 513.88] gi|134055499|emb|CAK44014.1| unnamed protein product [Aspergillus niger] Length = 572 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 41/160 (25%) Query: 314 APCSSTGTIRRHPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDS 373 P S + + + ++K + Q +++ +SF V +S CS+ ++ Sbjct: 385 PPTESPSATDENDVPVTGMTEERLIKLSNLQTRIVEHALSFPAAT-RVTYSTCSIHLLEN 443 Query: 374 EEVVQKVLRSSPIPVELVPLNSAYWKSIDMAMALSP------------------------ 409 E VV ++L S + + + M + Sbjct: 444 EAVVSRILASEVAKTRGWRVLRRDEQPVGMRKWVHRGIREERGVGGGSAAATTTVDGVGA 503 Query: 410 ---------EGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 EG +R P G GFF R Sbjct: 504 EVTLSDEELEGCLRCWPGD-------EEGTGGFFVAGFVR 536 >gi|294898664|ref|XP_002776327.1| williams-beuren syndrome critical region protein, putative [Perkinsus marinus ATCC 50983] gi|239883237|gb|EER08143.1| williams-beuren syndrome critical region protein, putative [Perkinsus marinus ATCC 50983] Length = 444 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 53/296 (17%) Query: 185 DIETWAHKLNAVMLPTGGIRL--------KELPESIVSLPGFAEGVWWVQDASASIPVQL 236 E +L + + + L ++++ P + +QD + + Sbjct: 134 SRENAIEQLGSAGIKSKADPLIPDVITVDPWNSKALIESPLVRDFTLVLQDRGSCLSAHS 193 Query: 237 ----FGTLNNLSVLDLCAAPGGKTAQL------IVSGAKVTALDVSKRRLEKLRCNLDRL 286 ++V+D CA+PG KT + + A+++ +R + L L + Sbjct: 194 LLAGVQPGEKITVVDACASPGSKTIHMLQLMRYRKIEGTMVAMELDPKRAKVLLDRLAKA 253 Query: 287 HL----------------------YAEDIIEMDAFDYCPKKLFDAVLVDAPCSSTGTIRR 324 + ++ D Y ++ V +D CS +G + Sbjct: 254 GFLPRDGTRTSEEVAHLSAAHSPDISVEVRVGDFIKYSSPEVTH-VNLDPSCSGSGLVDV 312 Query: 325 HPDVLWTRDTDDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSS 384 H D + + K + FQ ++L ++ V +S CS+ +++ EVV+K L Sbjct: 313 HADSE-SVGAQRLRKLSSFQCRMLDHALTAFPAVQTVCYSTCSIKNEENGEVVKKALNR- 370 Query: 385 PIPVELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 L W + P R ++ GF+ L + Sbjct: 371 -----LQSGYRREWPFEVGSCWKEPTHGAR-----DVQVRPEVDHCRGFYLCKLVK 416 >gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702] gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702] gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum V10Sc8a] Length = 143 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 52/143 (36%), Gaps = 8/143 (5%) Query: 3 SGMNARLVSSHLLSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPR 62 + R + +L + +L +L+ SQ + + Sbjct: 7 TRHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSVK-----LAKGVAEHEDE 61 Query: 63 IDAVLDFVL-ISSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVEQAKRDKENRHF 120 ++ +++ L R Y ++++++ ++ Y V D ++ A+E AK ++ Sbjct: 62 LNGIIESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAKEY-ADKTD 120 Query: 121 AKLVNSILRRVSREKIELLQRIA 143 + +N +L ++ Q A Sbjct: 121 VRFINGVLNSYYKDNPTKEQPDA 143 >gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 160 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 46/137 (33%), Gaps = 9/137 (6%) Query: 3 SGMNARLVSSHLLSC-VMRKRISLTCLLDLEYGDSAFRLLSQR------DQILVRAIVNV 55 AR ++ + + T L+ + L+ D + ++ Sbjct: 13 KRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYK 72 Query: 56 TLRFLPRIDAVLDFVLI--SSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKR 113 +R D ++++ L SL R +LRV+V ++ D V++ A Sbjct: 73 VIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCDTPAPVVINEYTNIASD 132 Query: 114 DKENRHFAKLVNSILRR 130 + +N +L + Sbjct: 133 LLDKPSEIGFINGLLDK 149 >gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis 2002] gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis 2002] Length = 134 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%) Query: 12 SHLLSCVMRKRISLTCL--LDLEYGDSAFRLLSQRDQILVRAIVNVTLRFLPRIDAVLDF 69 +L + + + + D+ + ++ ++ RID +++ Sbjct: 1 MKILYAYRFEDDTQDIIEFYKRFRELNQDEDFKDIDEKYLEKLLKGVIQNQQRIDNLIEK 60 Query: 70 VLI-SSLPRKKYSLQQLLRVSVAQILY-LDVADYAVVDLAVEQAKRDKENRHFAKLVNSI 127 L R +L+R++V ++L+ +V +D AV+ A VN I Sbjct: 61 YSKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMA-SIFGIEKAPSFVNGI 119 Query: 128 LRR 130 L R Sbjct: 120 LGR 122 >gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1] Length = 159 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 14/141 (9%) Query: 3 SGMNARLVSSHLLSCVMRKRIS-----LTCLLDLEYGDSAFRL------LSQRDQILVRA 51 + + R ++ + L D E +S D+ + Sbjct: 2 TRRDIRDRIFKIVFTLEFNDAEGMQDQLDFAFDPEMPGDEEDDPLLYGIVSNEDRDYITT 61 Query: 52 IVNVTLRFLPRIDAVLDFVLI-SSLPRKKYSLQQLLRVSVAQILYLD-VADYAVVDLAVE 109 V + ID ++ + LPR +LR+ V ++ Y + + + ++ AVE Sbjct: 62 KVKNIISKKAEIDEIISQISEGWKLPRIGKEELAILRLGVYEVKYDESIPEKVAINEAVE 121 Query: 110 QAKRDKENRHFAKLVNSILRR 130 AK+ + +K VN++L + Sbjct: 122 LAKKYC-DASASKFVNALLAK 141 >gi|166365064|ref|YP_001657337.1| transcription antitermination protein NusB [Microcystis aeruginosa NIES-843] gi|254772647|sp|B0JGZ3|NUSB_MICAN RecName: Full=N utilization substance protein B homolog; Short=Protein nusB gi|166087437|dbj|BAG02145.1| N utilization substance protein B homolog [Microcystis aeruginosa NIES-843] Length = 217 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 46 QILVRAIVNVTLRFLPRID-AVLDFVLISSLPRKKYSLQQLLRVSVAQILYLDVADYAVV 104 + ++ R I+ + ++ L R + +L+++VA++LYLD+ + Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVDWQLHRLPRIDRDILQIAVAEMLYLDLPQKVAI 176 Query: 105 DLAVEQAKRDKENRHFAKLVNSILRR 130 + A+E AKR ++ + + +N +LRR Sbjct: 177 NEAIELAKRYSDDEGY-RFINGVLRR 201 >gi|297292482|ref|XP_001095999.2| PREDICTED: putative methyltransferase NSUN7 isoform 1 [Macaca mulatta] Length = 717 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 70/472 (14%), Positives = 139/472 (29%), Gaps = 63/472 (13%) Query: 15 LSCVMRKRISLTCLLDLEYGDSAFRLLSQRDQILVR---AIVNVTLRFLPRIDAVLDFVL 71 + +R S +L + DQ R + L++ ++ +L Sbjct: 53 IFQGIRIEKSAQKVLIKYGNEPLRSFSESEDQSFQRLSYELAFSALKYQDILETILIDSC 112 Query: 72 ISSLPRKKYSLQQLLRVSVAQILYLDVADYAVVDLAVEQAKRDKENRHFAKLVNSILRRV 131 I L L+ V + V+ E +E + L Sbjct: 113 IFPSTTIPDHLSSLIIVMLYD-FQDRKFQTRVLSDNEESISEVQEVENLLNSFKIKLAAA 171 Query: 132 SREKIELLQRIAGISIIPEWFKERL----------ENFYGKERVLAISDACISPLYIDLT 181 ++ I+PE +++ K + + Y + Sbjct: 172 LARCRIKHDALSIYHILPETVRKQELRASTLPLYAWINTCKISPEEVYNNLKRRGYNKVK 231 Query: 182 VKFDIETWAHKLNAVMLPTGGIRLKELP--ESIVSLPGFAEGVWWVQDASASIPVQLFGT 239 I+ K+ AV + + ++++ F + QD S S+ V Sbjct: 232 SVLHIDD---KVFAVDQHCYDVLIFPSHLKNDLINIDLFKDYKLIFQDKSRSLAVHSVKA 288 Query: 240 LNNLSVLDLCAAPGGKTAQLIV-------------SGAKVTALDVSKRRLEKLRCNLDRL 286 L N+ L G + G + A D + L ++ Sbjct: 289 LLNMDDDILMVNTGSWYTVAHMSILTNNNTSKVFVCGVQSQAKDPDLKTL------FTKM 342 Query: 287 HLYAEDIIEMDAFDYCPK----KLFDAVLVDAPCSSTGTIR-------RHPDVLWTRDT- 334 +I+ + K + +L+ CS G H D + +D Sbjct: 343 GCKNIEILRETFINIESKDHRLQKVKVILLLPRCSGLGVSNPVEFILNEHEDTEFLKDHS 402 Query: 335 ------DDIVKSACFQRKLLLQGISFVKPGGIVVFSNCSLDKQDSEEVVQKVLRSSPIPV 388 D + A Q + L + F K VV+ CS+ +++E VV+K L Sbjct: 403 QGGISVDKLHILAQQQYEQLTHAMKFTKAQA-VVYCTCSVCPEENEAVVKKALE-----F 456 Query: 389 ELVPLNSAYWKSIDMAMALSPEGWIRITPDMLEKIDGVSSGMDGFFAVALRR 440 + + ++ + L I+++ D +++ +G F L R Sbjct: 457 QDLGNKVQLYRLSPPVLPLCSLKEIQLSTDKFFRMEPSEI-TNGCFLSILTR 507 >gi|156051912|ref|XP_001591917.1| hypothetical protein SS1G_07363 [Sclerotinia sclerotiorum 1980] gi|154705141|gb|EDO04880.1| hypothetical protein SS1G_07363 [Sclerotinia sclerotiorum 1980 UF-70] Length = 627 Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%) Query: 341 ACFQRKLLLQGISFVKPGGI-VVF