Query gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 16:58:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780667.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1bts_A BAND 3 anion transport 8.0 1.4E+02 0.0058 13.2 1.7 13 14-26 8-20 (26) 2 1im3_D Cytomegalovirus protein 6.2 92 0.0039 14.1 0.0 10 5-14 46-55 (95) 3 2b3g_B Cellular tumor antigen 6.0 1.4E+02 0.0059 13.1 0.8 14 4-17 11-24 (28) 4 2kwh_A RAla-binding protein 1; 5.6 1.5E+02 0.0065 13.0 0.8 11 30-40 38-48 (56) 5 1ybk_A Tetrabrachion; right ha 4.4 1.8E+02 0.0077 12.6 0.5 13 7-19 7-19 (52) 6 2fyu_K Ubiquinol-cytochrome C 3.0 3.2E+02 0.013 11.4 2.0 20 19-38 11-30 (56) 7 2keg_A PLNK; protein, peptide, 2.7 3.4E+02 0.014 11.3 1.6 14 10-23 11-24 (32) 8 2o5n_A MUHV1GPM153; mouse cyto 2.6 3.5E+02 0.015 11.2 1.1 32 6-37 64-95 (319) 9 1tbx_A ORF F-93, hypothetical 2.6 3.3E+02 0.014 11.3 0.4 10 25-34 7-16 (99) 10 3nkd_A Crispr-associated prote 2.4 3.8E+02 0.016 11.0 1.5 20 4-23 205-233 (305) No 1 >1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A Probab=7.96 E-value=1.4e+02 Score=13.20 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHC Q ss_conf 5899999999981 Q gi|254780667|r 14 RFTAVQRLVFAFY 26 (43) Q Consensus 14 rftavqrlvfafy 26 (43) --||||...||.. T Consensus 8 istavqgilfall 20 (26) T 1bts_A 8 ISTAVQGILFALL 20 (26) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999996 No 2 >1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich, immunoglobulin (IG) fold, immunoglobulin (IG)-like domain, protein complex; 2.20A {Human herpesvirus 5} SCOP: b.1.18.5 Probab=6.23 E-value=92 Score=14.05 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=7.3 Q ss_pred CCCCCCHHHH Q ss_conf 0110220225 Q gi|254780667|r 5 LLHADDIEFR 14 (43) Q Consensus 5 llhaddiefr 14 (43) ..||||.||- T Consensus 46 ~v~a~dvefi 55 (95) T 1im3_D 46 YVHADDVEFV 55 (95) T ss_dssp CCCGGGEEEE T ss_pred EEECCCCEEE T ss_conf 8970330570 No 3 >2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens} Probab=6.00 E-value=1.4e+02 Score=13.15 Aligned_cols=14 Identities=50% Similarity=0.591 Sum_probs=10.5 Q ss_pred CCCCCCCHHHHHHH Q ss_conf 00110220225899 Q gi|254780667|r 4 GLLHADDIEFRFTA 17 (43) Q Consensus 4 gllhaddiefrfta 17 (43) -.|..||||--||. T Consensus 11 lmlspddieqwfte 24 (28) T 2b3g_B 11 LMLSPDDIEQWFTE 24 (28) T ss_dssp GGCCHHHHHHHHHC T ss_pred HHCCHHHHHHHHHC T ss_conf 60584879998524 No 4 >2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B* Probab=5.63 E-value=1.5e+02 Score=12.97 Aligned_cols=11 Identities=64% Similarity=1.038 Sum_probs=8.5 Q ss_pred HHHHHHHHHHH Q ss_conf 89744323331 Q gi|254780667|r 30 VVWEFGRILTA 40 (43) Q Consensus 30 vvwefgrilta 40 (43) -.||.-||+|+ T Consensus 38 ~LWeVQRiiTq 48 (56) T 2kwh_A 38 RLWEVQRILTA 48 (56) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 5 >1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A Probab=4.35 E-value=1.8e+02 Score=12.58 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=9.9 Q ss_pred CCCCHHHHHHHHH Q ss_conf 1022022589999 Q gi|254780667|r 7 HADDIEFRFTAVQ 19 (43) Q Consensus 7 haddiefrftavq 19 (43) .||||-+|.|..- T Consensus 7 taddivyrltvii 19 (52) T 1ybk_A 7 TADDIVYRLTVII 19 (52) T ss_dssp HHHHHHHHHHHHH T ss_pred CCCCEEEEEEEEE T ss_conf 4331168999998 No 6 >2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa protein; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 1l0n_K* 1qcr_K* Probab=2.97 E-value=3.2e+02 Score=11.41 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=14.4 Q ss_pred HHHHHHHCCHHHHHHHHHHH Q ss_conf 99999981137897443233 Q gi|254780667|r 19 QRLVFAFYPSAVVWEFGRIL 38 (43) Q Consensus 19 qrlvfafypsavvwefgril 38 (43) -++.-+|-||++.|-..--+ T Consensus 11 ~eia~~wips~~~~G~a~~l 30 (56) T 2fyu_K 11 RQLARNWVPTASLWGAVGAV 30 (56) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHH T ss_conf 99999874324433011131 No 7 >2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A Probab=2.75 E-value=3.4e+02 Score=11.28 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 20225899999999 Q gi|254780667|r 10 DIEFRFTAVQRLVF 23 (43) Q Consensus 10 diefrftavqrlvf 23 (43) .|.+.|.||.|-|. T Consensus 11 aigyafgaveravl 24 (32) T 2keg_A 11 AIGYAFGAVERAVL 24 (32) T ss_dssp HHHHHHHHHHHHHT T ss_pred EEHHHHHHHHHHHH T ss_conf 10123447788875 No 8 >2o5n_A MUHV1GPM153; mouse cytomegalovirus, MHC-I-like, M145 family, MHC- IV, IG-superfamily, alpha-beta protein, viral protein; HET: NAG BMA NDG; 2.40A {Murid herpesvirus 1} Probab=2.62 E-value=3.5e+02 Score=11.19 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=22.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 11022022589999999998113789744323 Q gi|254780667|r 6 LHADDIEFRFTAVQRLVFAFYPSAVVWEFGRI 37 (43) Q Consensus 6 lhaddiefrftavqrlvfafypsavvwefgri 37 (43) ...+.-|++|.+-|+-.+.-+-.-+.|+-.+| T Consensus 64 ~se~~PEi~Fl~~Qk~~L~tlr~~~~~~~~~I 95 (319) T 2o5n_A 64 ANESWPEIQFLLQNREFVSKYYADVVQTPGEL 95 (319) T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHCCSSSCE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE T ss_conf 23335889999999999999998517888569 No 9 >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Probab=2.56 E-value=3.3e+02 Score=11.32 Aligned_cols=10 Identities=50% Similarity=1.195 Sum_probs=0.0 Q ss_pred HCCHHHHHHH Q ss_conf 8113789744 Q gi|254780667|r 25 FYPSAVVWEF 34 (43) Q Consensus 25 fypsavvwef 34 (43) |||.|+|..+ T Consensus 7 fypeaivl~y 16 (99) T 1tbx_A 7 FYPEAIVLAY 16 (99) T ss_dssp BCHHHHHHHH T ss_pred CCCCCEEEEE T ss_conf 5811168899 No 10 >3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA recombination, DNA repair, IM system; 1.95A {Escherichia coli} Probab=2.40 E-value=3.8e+02 Score=11.04 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=0.0 Q ss_pred CCCCCCCH---------HHHHHHHHHHHH Q ss_conf 00110220---------225899999999 Q gi|254780667|r 4 GLLHADDI---------EFRFTAVQRLVF 23 (43) Q Consensus 4 gllhaddi---------efrftavqrlvf 23 (43) |.+|.+.- +||..-|-+++| T Consensus 205 GflH~~r~~Slv~DlaE~fk~~ivd~~af 233 (305) T 3nkd_A 205 GFVHTGKPLSFVYDIADIIKFDTVVPKAF 233 (305) T ss_dssp CSSSCSSTTHHHHHHHHHHHHHTHHHHHH T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 12236998626888898742475399999 Done!