Query         gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 16:58:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780667.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1bts_A BAND 3 anion transport    8.0 1.4E+02  0.0058   13.2   1.7   13   14-26      8-20  (26)
  2 1im3_D Cytomegalovirus protein   6.2      92  0.0039   14.1   0.0   10    5-14     46-55  (95)
  3 2b3g_B Cellular tumor antigen    6.0 1.4E+02  0.0059   13.1   0.8   14    4-17     11-24  (28)
  4 2kwh_A RAla-binding protein 1;   5.6 1.5E+02  0.0065   13.0   0.8   11   30-40     38-48  (56)
  5 1ybk_A Tetrabrachion; right ha   4.4 1.8E+02  0.0077   12.6   0.5   13    7-19      7-19  (52)
  6 2fyu_K Ubiquinol-cytochrome C    3.0 3.2E+02   0.013   11.4   2.0   20   19-38     11-30  (56)
  7 2keg_A PLNK; protein, peptide,   2.7 3.4E+02   0.014   11.3   1.6   14   10-23     11-24  (32)
  8 2o5n_A MUHV1GPM153; mouse cyto   2.6 3.5E+02   0.015   11.2   1.1   32    6-37     64-95  (319)
  9 1tbx_A ORF F-93, hypothetical    2.6 3.3E+02   0.014   11.3   0.4   10   25-34      7-16  (99)
 10 3nkd_A Crispr-associated prote   2.4 3.8E+02   0.016   11.0   1.5   20    4-23    205-233 (305)

No 1  
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=7.96  E-value=1.4e+02  Score=13.20  Aligned_cols=13  Identities=46%  Similarity=0.534  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             5899999999981
Q gi|254780667|r   14 RFTAVQRLVFAFY   26 (43)
Q Consensus        14 rftavqrlvfafy   26 (43)
                      --||||...||..
T Consensus         8 istavqgilfall   20 (26)
T 1bts_A            8 ISTAVQGILFALL   20 (26)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999996


No 2  
>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich, immunoglobulin (IG) fold, immunoglobulin (IG)-like domain, protein complex; 2.20A {Human herpesvirus 5} SCOP: b.1.18.5
Probab=6.23  E-value=92  Score=14.05  Aligned_cols=10  Identities=60%  Similarity=1.042  Sum_probs=7.3

Q ss_pred             CCCCCCHHHH
Q ss_conf             0110220225
Q gi|254780667|r    5 LLHADDIEFR   14 (43)
Q Consensus         5 llhaddiefr   14 (43)
                      ..||||.||-
T Consensus        46 ~v~a~dvefi   55 (95)
T 1im3_D           46 YVHADDVEFV   55 (95)
T ss_dssp             CCCGGGEEEE
T ss_pred             EEECCCCEEE
T ss_conf             8970330570


No 3  
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=6.00  E-value=1.4e+02  Score=13.15  Aligned_cols=14  Identities=50%  Similarity=0.591  Sum_probs=10.5

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             00110220225899
Q gi|254780667|r    4 GLLHADDIEFRFTA   17 (43)
Q Consensus         4 gllhaddiefrfta   17 (43)
                      -.|..||||--||.
T Consensus        11 lmlspddieqwfte   24 (28)
T 2b3g_B           11 LMLSPDDIEQWFTE   24 (28)
T ss_dssp             GGCCHHHHHHHHHC
T ss_pred             HHCCHHHHHHHHHC
T ss_conf             60584879998524


No 4  
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=5.63  E-value=1.5e+02  Score=12.97  Aligned_cols=11  Identities=64%  Similarity=1.038  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             89744323331
Q gi|254780667|r   30 VVWEFGRILTA   40 (43)
Q Consensus        30 vvwefgrilta   40 (43)
                      -.||.-||+|+
T Consensus        38 ~LWeVQRiiTq   48 (56)
T 2kwh_A           38 RLWEVQRILTA   48 (56)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 5  
>1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A
Probab=4.35  E-value=1.8e+02  Score=12.58  Aligned_cols=13  Identities=46%  Similarity=0.749  Sum_probs=9.9

Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             1022022589999
Q gi|254780667|r    7 HADDIEFRFTAVQ   19 (43)
Q Consensus         7 haddiefrftavq   19 (43)
                      .||||-+|.|..-
T Consensus         7 taddivyrltvii   19 (52)
T 1ybk_A            7 TADDIVYRLTVII   19 (52)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEEE
T ss_conf             4331168999998


No 6  
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa protein; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 1l0n_K* 1qcr_K*
Probab=2.97  E-value=3.2e+02  Score=11.41  Aligned_cols=20  Identities=20%  Similarity=0.438  Sum_probs=14.4

Q ss_pred             HHHHHHHCCHHHHHHHHHHH
Q ss_conf             99999981137897443233
Q gi|254780667|r   19 QRLVFAFYPSAVVWEFGRIL   38 (43)
Q Consensus        19 qrlvfafypsavvwefgril   38 (43)
                      -++.-+|-||++.|-..--+
T Consensus        11 ~eia~~wips~~~~G~a~~l   30 (56)
T 2fyu_K           11 RQLARNWVPTASLWGAVGAV   30 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHH
T ss_conf             99999874324433011131


No 7  
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=2.75  E-value=3.4e+02  Score=11.28  Aligned_cols=14  Identities=43%  Similarity=0.707  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             20225899999999
Q gi|254780667|r   10 DIEFRFTAVQRLVF   23 (43)
Q Consensus        10 diefrftavqrlvf   23 (43)
                      .|.+.|.||.|-|.
T Consensus        11 aigyafgaveravl   24 (32)
T 2keg_A           11 AIGYAFGAVERAVL   24 (32)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             EEHHHHHHHHHHHH
T ss_conf             10123447788875


No 8  
>2o5n_A MUHV1GPM153; mouse cytomegalovirus, MHC-I-like, M145 family, MHC- IV, IG-superfamily, alpha-beta protein, viral protein; HET: NAG BMA NDG; 2.40A {Murid herpesvirus 1}
Probab=2.62  E-value=3.5e+02  Score=11.19  Aligned_cols=32  Identities=22%  Similarity=0.188  Sum_probs=22.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             11022022589999999998113789744323
Q gi|254780667|r    6 LHADDIEFRFTAVQRLVFAFYPSAVVWEFGRI   37 (43)
Q Consensus         6 lhaddiefrftavqrlvfafypsavvwefgri   37 (43)
                      ...+.-|++|.+-|+-.+.-+-.-+.|+-.+|
T Consensus        64 ~se~~PEi~Fl~~Qk~~L~tlr~~~~~~~~~I   95 (319)
T 2o5n_A           64 ANESWPEIQFLLQNREFVSKYYADVVQTPGEL   95 (319)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHHHHCCSSSCE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             23335889999999999999998517888569


No 9  
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus, viral protein; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=2.56  E-value=3.3e+02  Score=11.32  Aligned_cols=10  Identities=50%  Similarity=1.195  Sum_probs=0.0

Q ss_pred             HCCHHHHHHH
Q ss_conf             8113789744
Q gi|254780667|r   25 FYPSAVVWEF   34 (43)
Q Consensus        25 fypsavvwef   34 (43)
                      |||.|+|..+
T Consensus         7 fypeaivl~y   16 (99)
T 1tbx_A            7 FYPEAIVLAY   16 (99)
T ss_dssp             BCHHHHHHHH
T ss_pred             CCCCCEEEEE
T ss_conf             5811168899


No 10 
>3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA recombination, DNA repair, IM system; 1.95A {Escherichia coli}
Probab=2.40  E-value=3.8e+02  Score=11.04  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=0.0

Q ss_pred             CCCCCCCH---------HHHHHHHHHHHH
Q ss_conf             00110220---------225899999999
Q gi|254780667|r    4 GLLHADDI---------EFRFTAVQRLVF   23 (43)
Q Consensus         4 gllhaddi---------efrftavqrlvf   23 (43)
                      |.+|.+.-         +||..-|-+++|
T Consensus       205 GflH~~r~~Slv~DlaE~fk~~ivd~~af  233 (305)
T 3nkd_A          205 GFVHTGKPLSFVYDIADIIKFDTVVPKAF  233 (305)
T ss_dssp             CSSSCSSTTHHHHHHHHHHHHHTHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             12236998626888898742475399999


Done!