Query         gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 08:11:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780667.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1im3d_ b.1.18.5 (D:) Cytomega   6.2      53  0.0039   14.1   0.0   10    5-14     46-55  (95)
  2 d2fyuk1 f.23.15.1 (K:1-53) Sub   3.3 1.7E+02   0.012   11.6   1.5   18   20-37     12-29  (53)
  3 d1dj8a_ a.57.1.1 (A:) Protein    2.9 1.7E+02   0.012   11.6   0.4   12   24-35     19-30  (79)
  4 d1i1ra1 b.1.2.1 (A:2-101) Cyto   2.5      54  0.0039   14.0  -2.5   16   27-42     10-25  (100)
  5 d1v54i_ f.23.3.1 (I:) Mitochon   2.3 2.2E+02   0.016   11.0   2.4   31    1-35      8-38  (73)
  6 d1sraa_ a.39.1.3 (A:) C-termin   2.3 2.3E+02   0.016   11.0   1.0   12   26-37     75-86  (151)
  7 d1tafb_ a.22.1.3 (B:) TAF(II)6   2.2 2.3E+02   0.017   10.9   0.5   11    8-18     33-43  (70)
  8 d1q90n_ f.23.27.1 (N:) PetN su   2.2 2.4E+02   0.017   10.9   2.0   16   17-32     11-26  (31)
  9 d1jbqa_ c.79.1.1 (A:) Cystathi   1.6 1.5E+02   0.011   11.8  -1.4   15   27-41      7-21  (355)
 10 d1ctda_ a.39.1.5 (A:) Troponin   1.5 3.1E+02   0.023   10.3   0.6    9   33-41     25-33  (34)

No 1  
>d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human cytomegalovirus [TaxId: 10359]}
Probab=6.23  E-value=53  Score=14.05  Aligned_cols=10  Identities=60%  Similarity=1.042  Sum_probs=7.3

Q ss_pred             CCCCCCHHHH
Q ss_conf             0110220225
Q gi|254780667|r    5 LLHADDIEFR   14 (43)
Q Consensus         5 llhaddiefr   14 (43)
                      ..||||.||-
T Consensus        46 ~v~a~dvefi   55 (95)
T d1im3d_          46 YVHADDVEFV   55 (95)
T ss_dssp             CCCGGGEEEE
T ss_pred             EEECCCCEEE
T ss_conf             8970330570


No 2  
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.28  E-value=1.7e+02  Score=11.59  Aligned_cols=18  Identities=22%  Similarity=0.425  Sum_probs=13.4

Q ss_pred             HHHHHHCCHHHHHHHHHH
Q ss_conf             999998113789744323
Q gi|254780667|r   20 RLVFAFYPSAVVWEFGRI   37 (43)
Q Consensus        20 rlvfafypsavvwefgri   37 (43)
                      .++-+|-||++.|-..--
T Consensus        12 ~ia~~wips~~~~G~a~g   29 (53)
T d2fyuk1          12 QLARNWVPTASLWGAVGA   29 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999987023565410001


No 3  
>d1dj8a_ a.57.1.1 (A:) Protein HNS-dependent expression A; HdeA {Escherichia coli [TaxId: 562]}
Probab=2.86  E-value=1.7e+02  Score=11.57  Aligned_cols=12  Identities=33%  Similarity=0.506  Sum_probs=8.7

Q ss_pred             HHCCHHHHHHHH
Q ss_conf             981137897443
Q gi|254780667|r   24 AFYPSAVVWEFG   35 (43)
Q Consensus        24 afypsavvwefg   35 (43)
                      .|+|.+|-|--|
T Consensus        19 tfkP~av~~Aeg   30 (79)
T d1dj8a_          19 SFQPTAVGFAEA   30 (79)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             CCCCCEEHHHHH
T ss_conf             247511218887


No 4  
>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.47  E-value=54  Score=14.03  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=6.1

Q ss_pred             CHHHHHHHHHHHHHHC
Q ss_conf             1378974432333102
Q gi|254780667|r   27 PSAVVWEFGRILTATC   42 (43)
Q Consensus        27 psavvwefgriltatc   42 (43)
                      |++-|-..|.-+||+|
T Consensus        10 p~~Pvv~lGS~~TAsC   25 (100)
T d1i1ra1          10 PESPVVQLHSNFTAVC   25 (100)
T ss_dssp             SSSCEEETTCCEEEEE
T ss_pred             CCCCEEECCCCEEEEE
T ss_conf             6997687799889999


No 5  
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.34  E-value=2.2e+02  Score=11.00  Aligned_cols=31  Identities=29%  Similarity=0.536  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             93000110220225899999999981137897443
Q gi|254780667|r    1 MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFG   35 (43)
Q Consensus         1 mmkgllhaddiefrftavqrlvfafypsavvwefg   35 (43)
                      .|+|||+. .|  ||.-+--++.. --+++.|.||
T Consensus         8 qmrGLl~~-~l--k~hl~~a~~ls-l~~a~~~Kf~   38 (73)
T d1v54i_           8 QMRGLLAR-RL--RFHIVGAFMVS-LGFATFYKFA   38 (73)
T ss_dssp             CCBSHHHH-HH--HHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHH-HH--HHHHHHHHHHH-HHHHHHHHHH
T ss_conf             77679999-99--99999999999-9999999987


No 6  
>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.29  E-value=2.3e+02  Score=10.96  Aligned_cols=12  Identities=42%  Similarity=1.052  Sum_probs=8.9

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             113789744323
Q gi|254780667|r   26 YPSAVVWEFGRI   37 (43)
Q Consensus        26 ypsavvwefgri   37 (43)
                      |.-+|.|.|+.+
T Consensus        75 ~~~~v~W~F~~L   86 (151)
T d1sraa_          75 YIFPVHWQFGQL   86 (151)
T ss_dssp             GHHHHHHHHHHH
T ss_pred             CCCCCEEEHHHC
T ss_conf             556512015323


No 7  
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.20  E-value=2.3e+02  Score=10.90  Aligned_cols=11  Identities=18%  Similarity=0.649  Sum_probs=0.0

Q ss_pred             CCCHHHHHHHH
Q ss_conf             02202258999
Q gi|254780667|r    8 ADDIEFRFTAV   18 (43)
Q Consensus         8 addiefrftav   18 (43)
                      |+|+|||...+
T Consensus        33 A~DveYRl~ei   43 (70)
T d1tafb_          33 AEDVSIKLKRI   43 (70)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 8  
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.15  E-value=2.4e+02  Score=10.86  Aligned_cols=16  Identities=44%  Similarity=0.762  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCHHHHH
Q ss_conf             9999999981137897
Q gi|254780667|r   17 AVQRLVFAFYPSAVVW   32 (43)
Q Consensus        17 avqrlvfafypsavvw   32 (43)
                      +.--..|.|--|-|||
T Consensus        11 aa~~atfsfslslvvw   26 (31)
T d1q90n_          11 AATCVMFSFSLSLVVW   26 (31)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHEEEEEEEEE
T ss_conf             8898742225889998


No 9  
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.61  E-value=1.5e+02  Score=11.84  Aligned_cols=15  Identities=33%  Similarity=0.835  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             137897443233310
Q gi|254780667|r   27 PSAVVWEFGRILTAT   41 (43)
Q Consensus        27 psavvwefgriltat   41 (43)
                      ||+.-|+.||-++.+
T Consensus         7 ~~~~~~~~~~~~~~~   21 (355)
T d1jbqa_           7 PSRCTWQLGRPASES   21 (355)
T ss_dssp             CCCCCCCTTSCGGGC
T ss_pred             CCCCEEECCCCCCCC
T ss_conf             988655489868889


No 10 
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=1.54  E-value=3.1e+02  Score=10.28  Aligned_cols=9  Identities=67%  Similarity=0.936  Sum_probs=0.0

Q ss_pred             HHHHHHHHH
Q ss_conf             443233310
Q gi|254780667|r   33 EFGRILTAT   41 (43)
Q Consensus        33 efgriltat   41 (43)
                      ||+.|+.+|
T Consensus        25 El~~ilr~t   33 (34)
T d1ctda_          25 ELGEILRAT   33 (34)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
T ss_conf             999998723


Done!