Query gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:11:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780667.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1im3d_ b.1.18.5 (D:) Cytomega 6.2 53 0.0039 14.1 0.0 10 5-14 46-55 (95) 2 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.3 1.7E+02 0.012 11.6 1.5 18 20-37 12-29 (53) 3 d1dj8a_ a.57.1.1 (A:) Protein 2.9 1.7E+02 0.012 11.6 0.4 12 24-35 19-30 (79) 4 d1i1ra1 b.1.2.1 (A:2-101) Cyto 2.5 54 0.0039 14.0 -2.5 16 27-42 10-25 (100) 5 d1v54i_ f.23.3.1 (I:) Mitochon 2.3 2.2E+02 0.016 11.0 2.4 31 1-35 8-38 (73) 6 d1sraa_ a.39.1.3 (A:) C-termin 2.3 2.3E+02 0.016 11.0 1.0 12 26-37 75-86 (151) 7 d1tafb_ a.22.1.3 (B:) TAF(II)6 2.2 2.3E+02 0.017 10.9 0.5 11 8-18 33-43 (70) 8 d1q90n_ f.23.27.1 (N:) PetN su 2.2 2.4E+02 0.017 10.9 2.0 16 17-32 11-26 (31) 9 d1jbqa_ c.79.1.1 (A:) Cystathi 1.6 1.5E+02 0.011 11.8 -1.4 15 27-41 7-21 (355) 10 d1ctda_ a.39.1.5 (A:) Troponin 1.5 3.1E+02 0.023 10.3 0.6 9 33-41 25-33 (34) No 1 >d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human cytomegalovirus [TaxId: 10359]} Probab=6.23 E-value=53 Score=14.05 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=7.3 Q ss_pred CCCCCCHHHH Q ss_conf 0110220225 Q gi|254780667|r 5 LLHADDIEFR 14 (43) Q Consensus 5 llhaddiefr 14 (43) ..||||.||- T Consensus 46 ~v~a~dvefi 55 (95) T d1im3d_ 46 YVHADDVEFV 55 (95) T ss_dssp CCCGGGEEEE T ss_pred EEECCCCEEE T ss_conf 8970330570 No 2 >d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Probab=3.28 E-value=1.7e+02 Score=11.59 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=13.4 Q ss_pred HHHHHHCCHHHHHHHHHH Q ss_conf 999998113789744323 Q gi|254780667|r 20 RLVFAFYPSAVVWEFGRI 37 (43) Q Consensus 20 rlvfafypsavvwefgri 37 (43) .++-+|-||++.|-..-- T Consensus 12 ~ia~~wips~~~~G~a~g 29 (53) T d2fyuk1 12 QLARNWVPTASLWGAVGA 29 (53) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999987023565410001 No 3 >d1dj8a_ a.57.1.1 (A:) Protein HNS-dependent expression A; HdeA {Escherichia coli [TaxId: 562]} Probab=2.86 E-value=1.7e+02 Score=11.57 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=8.7 Q ss_pred HHCCHHHHHHHH Q ss_conf 981137897443 Q gi|254780667|r 24 AFYPSAVVWEFG 35 (43) Q Consensus 24 afypsavvwefg 35 (43) .|+|.+|-|--| T Consensus 19 tfkP~av~~Aeg 30 (79) T d1dj8a_ 19 SFQPTAVGFAEA 30 (79) T ss_dssp GGHHHHHHHHHH T ss_pred CCCCCEEHHHHH T ss_conf 247511218887 No 4 >d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Probab=2.47 E-value=54 Score=14.03 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=6.1 Q ss_pred CHHHHHHHHHHHHHHC Q ss_conf 1378974432333102 Q gi|254780667|r 27 PSAVVWEFGRILTATC 42 (43) Q Consensus 27 psavvwefgriltatc 42 (43) |++-|-..|.-+||+| T Consensus 10 p~~Pvv~lGS~~TAsC 25 (100) T d1i1ra1 10 PESPVVQLHSNFTAVC 25 (100) T ss_dssp SSSCEEETTCCEEEEE T ss_pred CCCCEEECCCCEEEEE T ss_conf 6997687799889999 No 5 >d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]} Probab=2.34 E-value=2.2e+02 Score=11.00 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=14.0 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 93000110220225899999999981137897443 Q gi|254780667|r 1 MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFG 35 (43) Q Consensus 1 mmkgllhaddiefrftavqrlvfafypsavvwefg 35 (43) .|+|||+. .| ||.-+--++.. --+++.|.|| T Consensus 8 qmrGLl~~-~l--k~hl~~a~~ls-l~~a~~~Kf~ 38 (73) T d1v54i_ 8 QMRGLLAR-RL--RFHIVGAFMVS-LGFATFYKFA 38 (73) T ss_dssp CCBSHHHH-HH--HHHHHHHHHHH-HHHHHHHHHH T ss_pred HHHHHHHH-HH--HHHHHHHHHHH-HHHHHHHHHH T ss_conf 77679999-99--99999999999-9999999987 No 6 >d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.29 E-value=2.3e+02 Score=10.96 Aligned_cols=12 Identities=42% Similarity=1.052 Sum_probs=8.9 Q ss_pred CCHHHHHHHHHH Q ss_conf 113789744323 Q gi|254780667|r 26 YPSAVVWEFGRI 37 (43) Q Consensus 26 ypsavvwefgri 37 (43) |.-+|.|.|+.+ T Consensus 75 ~~~~v~W~F~~L 86 (151) T d1sraa_ 75 YIFPVHWQFGQL 86 (151) T ss_dssp GHHHHHHHHHHH T ss_pred CCCCCEEEHHHC T ss_conf 556512015323 No 7 >d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=2.20 E-value=2.3e+02 Score=10.90 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=0.0 Q ss_pred CCCHHHHHHHH Q ss_conf 02202258999 Q gi|254780667|r 8 ADDIEFRFTAV 18 (43) Q Consensus 8 addiefrftav 18 (43) |+|+|||...+ T Consensus 33 A~DveYRl~ei 43 (70) T d1tafb_ 33 AEDVSIKLKRI 43 (70) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 8 >d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=2.15 E-value=2.4e+02 Score=10.86 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCHHHHH Q ss_conf 9999999981137897 Q gi|254780667|r 17 AVQRLVFAFYPSAVVW 32 (43) Q Consensus 17 avqrlvfafypsavvw 32 (43) +.--..|.|--|-||| T Consensus 11 aa~~atfsfslslvvw 26 (31) T d1q90n_ 11 AATCVMFSFSLSLVVW 26 (31) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHEEEEEEEEE T ss_conf 8898742225889998 No 9 >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Probab=1.61 E-value=1.5e+02 Score=11.84 Aligned_cols=15 Identities=33% Similarity=0.835 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 137897443233310 Q gi|254780667|r 27 PSAVVWEFGRILTAT 41 (43) Q Consensus 27 psavvwefgriltat 41 (43) ||+.-|+.||-++.+ T Consensus 7 ~~~~~~~~~~~~~~~ 21 (355) T d1jbqa_ 7 PSRCTWQLGRPASES 21 (355) T ss_dssp CCCCCCCTTSCGGGC T ss_pred CCCCEEECCCCCCCC T ss_conf 988655489868889 No 10 >d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Probab=1.54 E-value=3.1e+02 Score=10.28 Aligned_cols=9 Identities=67% Similarity=0.936 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 443233310 Q gi|254780667|r 33 EFGRILTAT 41 (43) Q Consensus 33 efgriltat 41 (43) ||+.|+.+| T Consensus 25 El~~ilr~t 33 (34) T d1ctda_ 25 ELGEILRAT 33 (34) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHC T ss_conf 999998723 Done!