BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780667|ref|YP_003065080.1| hypothetical protein
CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040344|gb|ACT57140.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 43

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43
          MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ
Sbjct: 1  MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43


>gi|302418918|ref|XP_003007290.1| pentafunctional AROM polypeptide [Verticillium albo-atrum VaMs.102]
 gi|327507675|sp|C9SE96|ARO1_VERA1 RecName: Full=Pentafunctional AROM polypeptide; Includes: RecName:
           Full=3-dehydroquinate synthase; Short=DHQS; Includes:
           RecName: Full=3-phosphoshikimate
           1-carboxyvinyltransferase; AltName:
           Full=5-enolpyruvylshikimate-3-phosphate synthase;
           Short=EPSP synthase; Short=EPSPS; Includes: RecName:
           Full=Shikimate kinase; Short=SK; Includes: RecName:
           Full=3-dehydroquinate dehydratase;
           Short=3-dehydroquinase; Includes: RecName:
           Full=Shikimate dehydrogenase
 gi|261354892|gb|EEY17320.1| pentafunctional AROM polypeptide [Verticillium albo-atrum VaMs.102]
          Length = 1574

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 5/41 (12%)

Query: 2   MKGLLHADDIEFRFTAVQRLVFAFYPSAVVWE-FGRILTAT 41
           +K LLH+DD+EF  TA+ RL  A Y     WE  G +L  T
Sbjct: 434 IKNLLHSDDVEFMLTAITRLGGASY----AWEDAGEVLVLT 470


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040344|gb|ACT57140.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 43

 Score = 81.2 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43
          MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ
Sbjct: 1  MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.336    0.142    0.458 

Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,028,947,682
Number of Sequences: 14124377
Number of extensions: 30126568
Number of successful extensions: 99669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99666
Number of HSP's gapped (non-prelim): 4
length of query: 43
length of database: 4,842,793,630
effective HSP length: 17
effective length of query: 26
effective length of database: 4,602,679,221
effective search space: 119669659746
effective search space used: 119669659746
T: 11
A: 40
X1: 16 ( 7.7 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 76 (33.7 bits)