BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780667|ref|YP_003065080.1| hypothetical protein
CLIBASIA_02770 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780667|ref|YP_003065080.1| hypothetical protein CLIBASIA_02770 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 43

 Score = 92.0 bits (227), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43
          MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ
Sbjct: 1  MMKGLLHADDIEFRFTAVQRLVFAFYPSAVVWEFGRILTATCQ 43


>gi|254780661|ref|YP_003065074.1| exonuclease I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 471

 Score = 21.2 bits (43), Expect = 4.0,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 18  VQRLVFAFYPSAVVW 32
           V R ++AF P  + W
Sbjct: 134 VMRAIYAFSPDGIQW 148


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 20.0 bits (40), Expect = 7.8,   Method: Composition-based stats.
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 22  VFAFYPSAVVWEF 34
           ++ F P+A++W F
Sbjct: 319 IYGFAPNALIWGF 331


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.336    0.142    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,784
Number of Sequences: 1233
Number of extensions: 510
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 43
length of database: 328,796
effective HSP length: 16
effective length of query: 27
effective length of database: 309,068
effective search space:  8344836
effective search space used:  8344836
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 31 (16.5 bits)