Query gi|254780668|ref|YP_003065081.1| hypothetical protein CLIBASIA_02775 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 46
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:40:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780668.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1e2w_A Cytochrome F; electron 12.2 83 0.0024 14.7 1.0 13 14-26 64-76 (174)
2 >1q90_A Apocytochrome F; membr 12.1 83 0.0025 14.7 1.0 13 14-26 64-76 (171)
3 >1hcz_A Cytochrome F; electron 10.5 1E+02 0.003 14.3 1.0 13 14-26 64-76 (189)
4 >2jxm_B Cytochrome F; copper, 10.5 1E+02 0.003 14.3 1.0 13 14-26 64-76 (188)
5 >1ci3_M Protein (cytochrome F) 10.2 1.1E+02 0.0031 14.2 1.0 13 14-26 64-76 (187)
6 >1vf5_C Cytochrome F; photosyn 8.6 1E+02 0.003 14.3 0.4 13 14-26 65-77 (191)
7 >2c5q_A RRAA-like protein YER0 5.4 1.8E+02 0.0053 13.1 0.3 12 1-12 22-33 (79)
8 >3fik_5 50S ribosomal protein 3.5 3.9E+02 0.011 11.6 1.1 22 4-25 23-44 (62)
9 >1yue_A Head vertex protein GP 3.3 4E+02 0.012 11.5 1.8 35 4-38 66-105 (205)
10 >1dx7_A Light-harvesting prote 3.2 2.6E+02 0.0077 12.4 -0.3 6 41-46 15-20 (48)
No 1
>>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} (A:1-156,A:234-251)
Probab=12.15 E-value=83 Score=14.70 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=9.9
Q ss_pred HCCCCEEEEEEEE
Q ss_conf 3047303778987
Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46)
Q Consensus 14 fskgklnvaavkc 26 (46)
=|||.|||.||--
T Consensus 64 G~kg~LNVGAVli 76 (174)
T 1e2w_A 64 GKKGDLNVGMVLI 76 (174)
T ss_dssp SSEECCEEEEEEE
T ss_pred CCCCCCCEEEEEE
T ss_conf 8525741447998
No 2
>>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} (A:1-156,A:234-248)
Probab=12.14 E-value=83 Score=14.70 Aligned_cols=13 Identities=46% Similarity=0.422 Sum_probs=9.8
Q ss_pred HCCCCEEEEEEEE
Q ss_conf 3047303778987
Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46)
Q Consensus 14 fskgklnvaavkc 26 (46)
=|||.|||.||--
T Consensus 64 G~kg~LNVGAVli 76 (171)
T 1q90_A 64 GKKGDLNVGMVLI 76 (171)
T ss_dssp SSEECCEEEEEEE
T ss_pred CCCCCCCEEEEEE
T ss_conf 7556743324998
No 3
>>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} (A:1-168,A:232-252)
Probab=10.55 E-value=1e+02 Score=14.30 Aligned_cols=13 Identities=54% Similarity=0.478 Sum_probs=9.7
Q ss_pred HCCCCEEEEEEEE
Q ss_conf 3047303778987
Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46)
Q Consensus 14 fskgklnvaavkc 26 (46)
=|||.|||.||--
T Consensus 64 G~kg~LNVGAVli 76 (189)
T 1hcz_A 64 GKKGALNVGAVLI 76 (189)
T ss_dssp SSEECCEEEEEEE
T ss_pred CCCCCCCEEEEEE
T ss_conf 8435753116997
No 4
>>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} (B:1-170,B:232-249)
Probab=10.46 E-value=1e+02 Score=14.28 Aligned_cols=13 Identities=46% Similarity=0.263 Sum_probs=9.8
Q ss_pred HCCCCEEEEEEEE
Q ss_conf 3047303778987
Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46)
Q Consensus 14 fskgklnvaavkc 26 (46)
=|||.|||.||--
T Consensus 64 G~kg~LNVGAVli 76 (188)
T 2jxm_B 64 GSPSGLNVGAVLM 76 (188)
T ss_dssp SSEECCEEEEEEE
T ss_pred CCCCCCEEEEEEE
T ss_conf 8405620546997
No 5
>>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit; HET: HEM; 1.90A {Phormidium laminosum} (M:1-169,M:232-249)
Probab=10.21 E-value=1.1e+02 Score=14.21 Aligned_cols=13 Identities=62% Similarity=0.531 Sum_probs=9.8
Q ss_pred HCCCCEEEEEEEE
Q ss_conf 3047303778987
Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46)
Q Consensus 14 fskgklnvaavkc 26 (46)
=|||.|||.||--
T Consensus 64 G~kg~LNVGAVli 76 (187)
T 1ci3_M 64 GSKGPLNVGAVLM 76 (187)
T ss_dssp SSEECCEEEEEEE
T ss_pred CCCCCCCEEEEEE
T ss_conf 8516741346997
No 6
>>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} (C:1-172,C:233-251)
Probab=8.60 E-value=1e+02 Score=14.29 Aligned_cols=13 Identities=54% Similarity=0.266 Sum_probs=9.4
Q ss_pred HCCCCEEEEEEEE
Q ss_conf 3047303778987
Q gi|254780668|r 14 FSKGKLNVAAVKC 26 (46)
Q Consensus 14 fskgklnvaavkc 26 (46)
=|||.|||.||--
T Consensus 65 G~kg~LNVGAVli 77 (191)
T 1vf5_C 65 GSKVGLNVGAVLM 77 (191)
T ss_dssp SCEECCCEECEEE
T ss_pred CCCCCCCEEEEEE
T ss_conf 8526742236997
No 7
>>2c5q_A RRAA-like protein YER010C; structural genomics,unknown function, structural genomics, unknown function, pseudo-knot; HET: CME; 1.70A {Saccharomyces cerevisiae} (A:1-28,A:190-240)
Probab=5.42 E-value=1.8e+02 Score=13.14 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=8.3
Q ss_pred CCCCCCCHHHHH
Q ss_conf 942122201455
Q gi|254780668|r 1 MYNLATGADLTE 12 (46)
Q Consensus 1 mynlatgadlte 12 (46)
.||..||.|+.+
T Consensus 22 ~~~~~~~~dl~k 33 (79)
T 2c5q_A 22 VYNIPTGTDISK 33 (79)
T ss_dssp HHCCTTTSCHHH
T ss_pred HCCCCCCHHHHH
T ss_conf 427776612999
No 8
>>3fik_5 50S ribosomal protein L1; ribosome, decoding, tRNA, EF-TU, ternary complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding; 6.70A {Escherichia coli} PDB: 2rdo_9 2gya_2 2gyc_2 (5:72-133)
Probab=3.47 E-value=3.9e+02 Score=11.56 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHCCCCEEEEEEE
Q ss_conf 1222014555304730377898
Q gi|254780668|r 4 LATGADLTEKFSKGKLNVAAVK 25 (46)
Q Consensus 4 latgadltekfskgklnvaavk 25 (46)
+.-|.||-|+..+|+++.--+-
T Consensus 23 ~vG~~elie~I~~g~~~fd~~i 44 (62)
T 3fik_5 23 LVGMEDLADQIKKGEMNFDVVI 44 (62)
T ss_dssp CBCSSTTTGGGGGTCCCCSCCE
T ss_pred EECHHHHHHHHHCCCCCCCEEE
T ss_conf 8654777788754773114344
No 9
>>1yue_A Head vertex protein GP24; bacteriophage T4, capsid protein, bacteriophage, virus, HK97, MAD, viral protein; 2.90A {Enterobacteria phage T4} (A:1-70,A:151-221,A:334-397)
Probab=3.32 E-value=4e+02 Score=11.48 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=25.4
Q ss_pred CCCCHHHHH-----HHCCCCEEEEEEEEEEEEEEEEEEEE
Q ss_conf 122201455-----53047303778987642236775333
Q gi|254780668|r 4 LATGADLTE-----KFSKGKLNVAAVKCELKAEVTVTRAA 38 (46)
Q Consensus 4 latgadlte-----kfskgklnvaavkcelkaevtvtraa 38 (46)
..+||+... .|+-.|..|.|.--.||||.|+--|-
T Consensus 66 ~~~~a~~~~~~~EMaFsIeK~tVtAKSRaLKAeYTiELAQ 105 (205)
T 1yue_A 66 FKTGASSDSEIADARFQINKWQTAVKSRKLKTGITVELAQ 105 (205)
T ss_dssp ---------CCCCCSCCEEEEEEECEEEEEEEEEETTHHH
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEEECHHHHH
T ss_conf 7775256787652589999999997722131044398999
No 10
>>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} (A:)
Probab=3.21 E-value=2.6e+02 Score=12.37 Aligned_cols=6 Identities=67% Similarity=1.066 Sum_probs=0.0
Q ss_pred EHHCCC
Q ss_conf 111049
Q gi|254780668|r 41 EAKELH 46 (46)
Q Consensus 41 eakelh 46 (46)
||+|+|
T Consensus 15 EA~E~H 20 (48)
T 1dx7_A 15 QAQELH 20 (48)
T ss_dssp HHHHHT
T ss_pred HHHHHH
T ss_conf 999999
Done!