RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780668|ref|YP_003065081.1| hypothetical protein
CLIBASIA_02775 [Candidatus Liberibacter asiaticus str. psy62]
         (46 letters)



>gnl|CDD|180500 PRK06270, PRK06270, homoserine dehydrogenase; Provisional.
          Length = 341

 Score = 25.6 bits (57), Expect = 2.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 16  KGKLNVAAVKCELKAEVTVT 35
            G LN A  + +L  +VTV 
Sbjct: 295 SGTLNAATFETDLAGDVTVV 314


>gnl|CDD|178138 PLN02523, PLN02523, galacturonosyltransferase.
          Length = 559

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 27  ELKAEVTVTRAAIVEAKEL 45
           E+K  V V R  I E+KE 
Sbjct: 153 EVKERVKVARQMIAESKES 171


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.125    0.328 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 628,945
Number of extensions: 22615
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 7
Length of query: 46
Length of database: 5,994,473
Length adjustment: 19
Effective length of query: 27
Effective length of database: 5,583,921
Effective search space: 150765867
Effective search space used: 150765867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)