BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780668|ref|YP_003065081.1| hypothetical protein
CLIBASIA_02775 [Candidatus Liberibacter asiaticus str. psy62]
         (46 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780668|ref|YP_003065081.1| hypothetical protein CLIBASIA_02775 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 46

 Score = 92.0 bits (227), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MYNLATGADLTEKFSKGKLNVAAVKCELKAEVTVTRAAIVEAKELH 46
          MYNLATGADLTEKFSKGKLNVAAVKCELKAEVTVTRAAIVEAKELH
Sbjct: 1  MYNLATGADLTEKFSKGKLNVAAVKCELKAEVTVTRAAIVEAKELH 46


>gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 103

 Score = 26.6 bits (57), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 4  LATGADLTEKFSKGKLNVAAVKCELKAEVTVTR 36
          LAT ADL +  ++ K ++A V+ ELKA++   R
Sbjct: 29 LATKADLADVRTELKQDIANVRTELKADIADVR 61


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 21.6 bits (44), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 9   DLTEKFSKGKLNV 21
           DLTEK  KGK+++
Sbjct: 193 DLTEKVKKGKVDI 205


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.125    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,767
Number of Sequences: 1233
Number of extensions: 393
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 46
length of database: 328,796
effective HSP length: 19
effective length of query: 27
effective length of database: 305,369
effective search space:  8244963
effective search space used:  8244963
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)