HHsearch alignment for GI: 254780669 and conserved domain: cd02940
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.99 E-value=1.2 Score=25.21 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=81.2
Q ss_pred EEECCCCCEEEEECCCCCCCHHHHHHHHHH------HHHHHHH-----CCCCEEEECCCCCCCCCCCCCC---CCCCCHH
Q ss_conf 797699706999548634999999999999------9996553-----3997066015576886663222---4567124
Q gi|254780669|r 37 VTFSNEQRFVLIAGPCQIESHDHAFMIAEK------LYAICQS-----LNIGLVYKSSFDKANRSSLAGK---RGVGLKK 102 (301)
Q Consensus 37 i~ig~~~~l~iIAGPCsiES~e~~~~~A~~------lk~~~~~-----~~~~~ifK~sfdKanRtS~~sf---rG~Gle~ 102 (301)
T Consensus 9 l~~~--nPi~lAAG~~~~~-~~~~~~~~~~G~G~vv~ktit~~~~~~gn~~PR~~r~~~~~~~~~g~~n~~~~~~~~~~~ 85 (299)
T cd02940 9 IKFP--NPFGLASAPPTTS-YPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEY 85 (299)
T ss_pred EECC--CCCEECCCCCCCC-HHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCEEECCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf 9889--9868787789989-999999998798889915689887888999987898876625521337840121202999
Q ss_pred HHHHHHHHHHHH-CCEEEEEC---CCHHHH----HHHHHH-CCEEEE-------------CHHHCCCHHHHHHHHH----
Q ss_conf 888999886652-87688522---889999----876502-157882-------------2576289999999850----
Q gi|254780669|r 103 GREIFRDLKKKY-GFPILTDV---HTEQQC----EAIADS-VDILQI-------------PALLCRQTDLLTAAAQ---- 156 (301)
Q Consensus 103 gL~il~e~k~~~-glpv~TeV---~~~~~~----e~~~~~-vDilQI-------------gA~~~rqtdLl~a~a~---- 156 (301)
T Consensus 86 ~~~~~~~~~~~~~~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v~~ 165 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE 165 (299)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999998752799737988517898789999999998718888998267889876123455524499999999999986
Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf -59779983677789999999999997258780899514
Q gi|254780669|r 157 -TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCER 194 (301)
Q Consensus 157 -t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301)
T Consensus 166 ~~~~Pi~vKLsP~~--~~i~~ia~~~~~~gadgiv~~Nt 202 (299)
T cd02940 166 AVKIPVIAKLTPNI--TDIREIARAAKEGGADGVSAINT 202 (299)
T ss_pred HCCCCEEEECCCCH--HHHHHHHHHHHHCCCCEEEEECC
T ss_conf 24786489628871--54999999999859989999766