HHsearch alignment for GI: 254780669 and conserved domain: cd04728

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.15  E-value=0.24  Score=29.77  Aligned_cols=168  Identities=23%  Similarity=0.310  Sum_probs=91.3

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-H-CCEEEEECCC
Q ss_conf             9954863499999999999999965533997066015576886663222456712488899988665-2-8768852288
Q gi|254780669|r   47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKK-Y-GFPILTDVHT  124 (301)
Q Consensus        47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~-~-glpv~TeV~~  124 (301)
T Consensus        12 LilGTgky~s~~~---~~~ai~aSgaeivT-VAlR-------R~~~~~-~--~~~---~~l~~i~~~~~~~LPNTAGc~t   74 (248)
T cd04728          12 LLLGTGKYPSPAI---MKEAIEASGAEIVT-VALR-------RVNIGD-P--GGE---SFLDLLDKSGYTLLPNTAGCRT   74 (248)
T ss_pred             EEEECCCCCCHHH---HHHHHHHHCCCEEE-EEEE-------ECCCCC-C--CCH---HHHHHHHHCCCEECCCCCCCCC
T ss_conf             3786489999999---99999996897699-9986-------305788-8--852---6898752338668765401167


Q ss_pred             HHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCE----EEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEEE
Q ss_conf             999987650215788225762899999998505977----9983677789999999999997258-------78089951
Q gi|254780669|r  125 EQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRV----INVKKGQFLSPWEMHNILQKLHAHG-------AKDVLFCE  193 (301)
Q Consensus       125 ~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kp----V~iKkgq~~s~~e~~~a~eki~~~G-------n~~i~lcE  193 (301)
T Consensus        75 a~EAvr~----------------A~laRE~~~t~~IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~GF~VlpY~~~D~v~ak  138 (248)
T cd04728          75 AEEAVRT----------------ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAK  138 (248)
T ss_pred             HHHHHHH----------------HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf             9999999----------------999999848986999981797677988689999999999889989786788999999


Q ss_pred             C------------CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf             4------------654440100000001068885-187168711777421223453212638899999999997189889
Q gi|254780669|r  194 R------------GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGI  260 (301)
Q Consensus       194 R------------G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGl  260 (301)
T Consensus       139 rLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~~vPvIVDAGi-------------G~----pS~Aa~aMElG~daV  201 (248)
T cd04728         139 RLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGI-------------GT----PSDAAQAMELGADAV  201 (248)
T ss_pred             HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC-------------CC----HHHHHHHHHCCCCEE
T ss_conf             9997495345204564347988799999999998479988984799-------------97----567899987265533


Q ss_pred             EEEE
Q ss_conf             9983
Q gi|254780669|r  261 FLET  264 (301)
Q Consensus       261 fiE~  264 (301)
T Consensus       202 L~NT  205 (248)
T cd04728         202 LLNT  205 (248)
T ss_pred             EHHH
T ss_conf             4546