HHsearch alignment for GI: 254780669 and conserved domain: cd04728
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.15 E-value=0.24 Score=29.77 Aligned_cols=168 Identities=23% Similarity=0.310 Sum_probs=91.3
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-H-CCEEEEECCC
Q ss_conf 9954863499999999999999965533997066015576886663222456712488899988665-2-8768852288
Q gi|254780669|r 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKK-Y-GFPILTDVHT 124 (301)
Q Consensus 47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~-~-glpv~TeV~~ 124 (301)
T Consensus 12 LilGTgky~s~~~---~~~ai~aSgaeivT-VAlR-------R~~~~~-~--~~~---~~l~~i~~~~~~~LPNTAGc~t 74 (248)
T cd04728 12 LLLGTGKYPSPAI---MKEAIEASGAEIVT-VALR-------RVNIGD-P--GGE---SFLDLLDKSGYTLLPNTAGCRT 74 (248)
T ss_pred EEEECCCCCCHHH---HHHHHHHHCCCEEE-EEEE-------ECCCCC-C--CCH---HHHHHHHHCCCEECCCCCCCCC
T ss_conf 3786489999999---99999996897699-9986-------305788-8--852---6898752338668765401167
Q ss_pred HHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCE----EEEECCCCCCHHHHHHHHHHHHHCC-------CCCEEEEE
Q ss_conf 999987650215788225762899999998505977----9983677789999999999997258-------78089951
Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRV----INVKKGQFLSPWEMHNILQKLHAHG-------AKDVLFCE 193 (301)
Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kp----V~iKkgq~~s~~e~~~a~eki~~~G-------n~~i~lcE 193 (301)
T Consensus 75 a~EAvr~----------------A~laRE~~~t~~IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~GF~VlpY~~~D~v~ak 138 (248)
T cd04728 75 AEEAVRT----------------ARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAK 138 (248)
T ss_pred HHHHHHH----------------HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHH
T ss_conf 9999999----------------999999848986999981797677988689999999999889989786788999999
Q ss_pred C------------CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Q ss_conf 4------------654440100000001068885-187168711777421223453212638899999999997189889
Q gi|254780669|r 194 R------------GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGI 260 (301)
Q Consensus 194 R------------G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGl 260 (301)
T Consensus 139 rLe~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~~vPvIVDAGi-------------G~----pS~Aa~aMElG~daV 201 (248)
T cd04728 139 RLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGI-------------GT----PSDAAQAMELGADAV 201 (248)
T ss_pred HHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC-------------CC----HHHHHHHHHCCCCEE
T ss_conf 9997495345204564347988799999999998479988984799-------------97----567899987265533
Q ss_pred EEEE
Q ss_conf 9983
Q gi|254780669|r 261 FLET 264 (301)
Q Consensus 261 fiE~ 264 (301)
T Consensus 202 L~NT 205 (248)
T cd04728 202 LLNT 205 (248)
T ss_pred EHHH
T ss_conf 4546