HHsearch alignment for GI: 254780669 and conserved domain: cd04740

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.68  E-value=0.22  Score=29.98  Aligned_cols=152  Identities=13%  Similarity=0.156  Sum_probs=86.3

Q ss_pred             EEECCCCCEEEEECCCCCCCHHHHHHHHHH------HHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCCCHHHHHHHH
Q ss_conf             797699706999548634999999999999------99965533997066015576886663--2224567124888999
Q gi|254780669|r   37 VTFSNEQRFVLIAGPCQIESHDHAFMIAEK------LYAICQSLNIGLVYKSSFDKANRSSL--AGKRGVGLKKGREIFR  108 (301)
Q Consensus        37 i~ig~~~~l~iIAGPCsiES~e~~~~~A~~------lk~~~~~~~~~~ifK~sfdKanRtS~--~sfrG~Gle~gL~il~  108 (301)
T Consensus         7 l~~~--nPi~lAAG~~~-~~~~~~~~~~~~g~G~v~~~Tvt~~-p~~Gn~~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~   82 (296)
T cd04740           7 LRLK--NPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLE-PREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL   82 (296)
T ss_pred             EECC--CCCEECCCCCC-CCHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCCCEEECCHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             8579--98787867899-8399999988589638993804703-145899981781541167652378886489998789


Q ss_pred             HHHHHHCCEEEEECCC--HH----HHHHHHHH-CCEEEE----------CHHHCCCHHH----HHHHHH-CCCEEEEECC
Q ss_conf             8866528768852288--99----99876502-157882----------2576289999----999850-5977998367
Q gi|254780669|r  109 DLKKKYGFPILTDVHT--EQ----QCEAIADS-VDILQI----------PALLCRQTDL----LTAAAQ-TGRVINVKKG  166 (301)
Q Consensus       109 e~k~~~glpv~TeV~~--~~----~~e~~~~~-vDilQI----------gA~~~rqtdL----l~a~a~-t~kpV~iKkg  166 (301)
T Consensus        83 ~~~~~~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~Pi~vKls  162 (296)
T cd04740          83 PWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT  162 (296)
T ss_pred             HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf             86356897189981689878999999998864898899978899867636775749999999999998604896699718


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             7789999999999997258780899514
Q gi|254780669|r  167 QFLSPWEMHNILQKLHAHGAKDVLFCER  194 (301)
Q Consensus       167 q~~s~~e~~~a~eki~~~Gn~~i~lcER  194 (301)
T Consensus       163 P~~--~~i~~ia~~~~~~g~dgiv~~NT  188 (296)
T cd04740         163 PNV--TDIVEIARAAEEAGADGLTLINT  188 (296)
T ss_pred             CCC--CHHHHHHHHHHHCCCCEEEEECC
T ss_conf             980--00999999999769988999746