Query gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 301 No_of_seqs 160 out of 1628 Neff 5.0 Searched_HMMs 23785 Date Tue May 31 17:56:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780669.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2nwr_A 2-dehydro-3-deoxyphosph 100.0 0 0 673.0 24.8 257 43-300 2-259 (267) 2 1vr6_A Phospho-2-dehydro-3-deo 100.0 0 0 668.2 28.0 269 1-299 75-346 (350) 3 1zco_A 2-dehydro-3-deoxyphosph 100.0 0 0 619.3 25.5 247 25-295 10-259 (262) 4 3nvt_A 3-deoxy-D-arabino-heptu 100.0 0 0 590.9 25.9 268 4-301 114-384 (385) 5 3fs2_A 2-dehydro-3-deoxyphosph 100.0 0 0 542.1 28.5 279 19-301 20-298 (298) 6 1vs1_A 3-deoxy-7-phosphoheptul 100.0 0 0 464.8 25.3 262 4-296 10-274 (276) 7 1o60_A 2-dehydro-3-deoxyphosph 100.0 0 0 351.9 26.4 274 24-301 2-277 (292) 8 2qkf_A 3-deoxy-D-manno-octulos 100.0 0 0 342.2 25.3 266 35-300 6-273 (280) 9 1n8f_A DAHP synthetase; (beta/ 99.8 1.7E-18 7.2E-23 141.1 21.1 249 36-299 45-346 (350) 10 1of8_A Phospho-2-dehydro-3-deo 99.8 3.7E-18 1.6E-22 138.9 21.5 244 36-291 60-357 (370) 11 1vli_A Spore coat polysacchari 99.5 8.8E-11 3.7E-15 90.4 26.7 252 23-299 11-284 (385) 12 2wqp_A Polysialic acid capsule 99.5 3.9E-10 1.6E-14 86.1 25.5 246 24-298 3-271 (349) 13 3g8r_A Probable spore coat pol 99.3 8.7E-09 3.7E-13 77.2 22.1 231 46-298 7-259 (350) 14 1tx2_A DHPS, dihydropteroate s 95.6 0.14 5.8E-06 29.9 15.0 203 56-269 61-280 (297) 15 1tlt_A Putative oxidoreductase 95.6 0.055 2.3E-06 32.5 7.8 75 107-187 44-118 (319) 16 3dty_A Oxidoreductase, GFO/IDH 95.6 0.028 1.2E-06 34.4 6.3 82 106-187 53-138 (398) 17 1vhn_A Putative flavin oxidore 95.5 0.068 2.9E-06 31.9 8.1 111 140-268 103-220 (318) 18 3euw_A MYO-inositol dehydrogen 95.2 0.087 3.6E-06 31.2 7.8 76 106-186 41-117 (344) 19 3kgf_A Probable 3-deoxy-D-arab 95.2 0.19 8E-06 29.0 10.4 144 135-282 278-432 (464) 20 3moi_A Probable dehydrogenase; 95.0 0.07 3E-06 31.8 6.8 76 106-186 40-116 (387) 21 3igs_A N-acetylmannosamine-6-p 95.0 0.22 9.3E-06 28.6 10.9 162 55-264 33-211 (232) 22 3ec7_A Putative dehydrogenase; 94.8 0.18 7.7E-06 29.1 8.4 81 106-191 61-144 (357) 23 2nvw_A Galactose/lactose metab 94.4 0.18 7.8E-06 29.1 7.8 85 106-192 81-172 (479) 24 3cea_A MYO-inositol 2-dehydrog 94.4 0.26 1.1E-05 28.1 8.5 80 106-189 46-126 (346) 25 3khj_A Inosine-5-monophosphate 94.4 0.31 1.3E-05 27.6 11.7 168 46-263 47-236 (361) 26 1ydw_A AX110P-like protein; st 94.1 0.15 6.4E-06 29.6 6.8 80 105-186 42-123 (362) 27 3ezy_A Dehydrogenase; structur 94.1 0.35 1.5E-05 27.2 8.9 79 105-187 38-117 (344) 28 3oqb_A Oxidoreductase; structu 94.1 0.19 8.1E-06 28.9 7.3 76 106-185 58-134 (383) 29 2dqw_A Dihydropteroate synthas 94.0 0.37 1.6E-05 27.1 15.3 236 6-269 16-274 (294) 30 2ho3_A Oxidoreductase, GFO/IDH 93.7 0.29 1.2E-05 27.8 7.6 77 106-186 38-114 (325) 31 3e9m_A Oxidoreductase, GFO/IDH 93.7 0.2 8.3E-06 28.9 6.7 77 106-186 42-119 (330) 32 3i23_A Oxidoreductase, GFO/IDH 93.6 0.21 8.8E-06 28.7 6.7 74 108-186 43-117 (349) 33 2h9a_B CO dehydrogenase/acetyl 93.5 0.45 1.9E-05 26.5 14.3 226 23-262 12-292 (310) 34 1xea_A Oxidoreductase, GFO/IDH 93.5 0.29 1.2E-05 27.8 7.3 81 103-187 36-116 (323) 35 2o4u_X Dimeric dihydrodiol deh 93.1 0.27 1.1E-05 28.0 6.6 78 105-186 40-118 (334) 36 1pii_A N-(5'phosphoribosyl)ant 93.1 0.52 2.2E-05 26.1 12.3 148 102-290 144-302 (452) 37 1zh8_A Oxidoreductase; TM0312, 92.8 0.56 2.3E-05 25.9 9.3 77 106-186 57-134 (340) 38 3e18_A Oxidoreductase; dehydro 92.7 0.39 1.6E-05 27.0 7.0 70 112-186 47-117 (359) 39 3mz0_A Inositol 2-dehydrogenas 92.4 0.63 2.7E-05 25.5 7.8 82 106-190 40-122 (344) 40 1aj0_A DHPS, dihydropteroate s 92.3 0.65 2.7E-05 25.5 14.3 203 55-268 35-260 (282) 41 3noy_A 4-hydroxy-3-methylbut-2 92.1 0.69 2.9E-05 25.3 15.8 191 23-256 14-229 (366) 42 2glx_A 1,5-anhydro-D-fructose 92.0 0.71 3E-05 25.2 7.7 114 107-228 38-152 (332) 43 3ip3_A Oxidoreductase, putativ 91.9 0.72 3E-05 25.2 7.8 80 103-187 38-120 (337) 44 1vc4_A Indole-3-glycerol phosp 91.9 0.59 2.5E-05 25.8 7.1 113 60-195 67-184 (254) 45 3evn_A Oxidoreductase, GFO/IDH 91.8 0.29 1.2E-05 27.8 5.4 73 110-186 46-119 (329) 46 3o9z_A Lipopolysaccaride biosy 91.6 0.5 2.1E-05 26.2 6.5 55 132-186 70-124 (312) 47 2h9a_A Carbon monoxide dehydro 91.5 0.8 3.4E-05 24.9 17.4 220 24-271 60-300 (445) 48 3kux_A Putative oxidoreductase 91.4 0.39 1.6E-05 26.9 5.7 76 111-191 48-123 (352) 49 2vp8_A Dihydropteroate synthas 91.3 0.84 3.5E-05 24.7 12.9 201 56-269 63-293 (318) 50 1lc0_A Biliverdin reductase A; 91.2 0.42 1.8E-05 26.7 5.8 54 133-186 64-117 (294) 51 1s2w_A Phosphoenolpyruvate pho 91.2 0.8 3.4E-05 24.9 7.2 48 73-123 37-87 (295) 52 1zfj_A Inosine monophosphate d 90.9 0.92 3.9E-05 24.5 7.6 139 96-263 168-365 (491) 53 3m2t_A Probable dehydrogenase; 90.9 0.61 2.6E-05 25.7 6.3 78 105-187 42-121 (359) 54 3btv_A Galactose/lactose metab 90.7 0.6 2.5E-05 25.7 6.2 79 107-186 63-147 (438) 55 3gdo_A Uncharacterized oxidore 90.7 0.96 4E-05 24.3 8.0 74 109-187 43-118 (358) 56 2p2s_A Putative oxidoreductase 90.6 0.47 2E-05 26.4 5.5 101 59-186 16-118 (336) 57 2ze3_A DFA0005; organic waste 89.9 1.1 4.7E-05 23.9 15.9 159 105-269 8-194 (275) 58 1xm3_A Thiazole biosynthesis p 89.7 0.2 8.5E-06 28.8 3.0 167 47-264 15-208 (264) 59 3db2_A Putative NADPH-dependen 89.7 1.2 4.9E-05 23.8 8.1 77 106-187 42-119 (354) 60 2vef_A Dihydropteroate synthas 89.6 1.2 4.9E-05 23.8 13.1 203 56-269 31-288 (314) 61 3eoo_A Methylisocitrate lyase; 87.8 1.5 6.5E-05 23.0 16.0 87 107-194 14-120 (298) 62 3hgj_A Chromate reductase; TIM 87.7 1.6 6.6E-05 23.0 7.2 113 134-263 165-318 (349) 63 3m5v_A DHDPS, dihydrodipicolin 87.6 1.6 6.7E-05 22.9 7.1 57 56-123 26-85 (301) 64 2e6f_A Dihydroorotate dehydrog 87.3 1.6 6.9E-05 22.8 9.9 103 93-195 71-197 (314) 65 1h6d_A Precursor form of gluco 87.0 0.92 3.9E-05 24.5 5.0 54 133-186 149-202 (433) 66 3n9r_A Fructose-bisphosphate a 86.9 1.7 7.3E-05 22.7 7.7 151 56-222 26-209 (307) 67 1z41_A YQJM, probable NADH-dep 86.9 1.7 7.3E-05 22.7 7.3 97 149-263 199-307 (338) 68 3c1a_A Putative oxidoreductase 86.7 1.6 6.7E-05 22.9 6.1 67 115-186 54-121 (315) 69 3f4l_A Putative oxidoreductase 86.2 1.7 7.3E-05 22.7 6.0 72 110-186 44-117 (345) 70 2ixa_A Alpha-N-acetylgalactosa 86.2 1.9 7.9E-05 22.4 8.1 90 102-192 56-148 (444) 71 2qr6_A IMP dehydrogenase/GMP r 84.7 1.6 6.7E-05 22.9 5.3 114 127-264 170-307 (393) 72 3e82_A Putative oxidoreductase 83.8 2.3 9.6E-05 21.9 5.8 68 115-187 52-120 (364) 73 1ep3_A Dihydroorotate dehydrog 83.6 2.2 9.2E-05 22.0 5.6 152 94-264 75-271 (311) 74 2htm_A Thiazole biosynthesis p 82.8 2.5 0.00011 21.6 5.6 175 47-264 15-208 (268) 75 3fa4_A 2,3-dimethylmalate lyas 82.6 2.7 0.00011 21.4 16.2 77 116-193 19-116 (302) 76 1rd5_A Tryptophan synthase alp 82.0 2.8 0.00012 21.3 8.3 219 46-293 23-259 (262) 77 1gvf_A Tagatose-bisphosphate a 81.0 3.1 0.00013 21.0 6.1 177 56-264 27-233 (286) 78 1h5y_A HISF; histidine biosynt 81.0 3.1 0.00013 21.0 9.9 184 61-290 36-246 (253) 79 1xxx_A DHDPS, dihydrodipicolin 80.2 3.2 0.00014 20.9 8.2 90 46-166 85-176 (303) 80 2rfg_A Dihydrodipicolinate syn 79.9 3.3 0.00014 20.8 8.0 113 45-192 70-184 (297) 81 1mxs_A KDPG aldolase; 2-keto-3 78.8 3.6 0.00015 20.6 8.5 109 54-191 34-145 (225) 82 1a53_A IGPS, indole-3-glycerol 78.8 3.6 0.00015 20.6 6.4 144 89-265 82-234 (247) 83 2yxg_A DHDPS, dihydrodipicolin 78.7 3.6 0.00015 20.6 8.1 61 45-119 70-130 (289) 84 1wv2_A Thiazole moeity, thiazo 78.4 3.7 0.00015 20.5 6.1 191 24-264 7-217 (265) 85 3civ_A Endo-beta-1,4-mannanase 78.1 3.7 0.00016 20.5 12.1 62 58-123 53-118 (343) 86 3oix_A Putative dihydroorotate 78.0 3.8 0.00016 20.4 8.5 145 35-191 43-226 (345) 87 3oa2_A WBPB; oxidoreductase, s 77.0 4 0.00017 20.3 5.7 56 132-187 71-126 (318) 88 3ju7_A Putative PLP-dependent 76.8 4.1 0.00017 20.2 6.7 113 108-229 43-167 (377) 89 2z9v_A Aspartate aminotransfer 76.8 3.2 0.00013 21.0 4.5 86 135-228 86-175 (392) 90 2hmc_A AGR_L_411P, dihydrodipi 76.8 4.1 0.00017 20.2 8.6 114 46-192 94-211 (344) 91 3fhl_A Putative oxidoreductase 76.7 4.1 0.00017 20.2 6.9 59 133-192 64-122 (362) 92 1ka9_F Imidazole glycerol phos 76.7 4.1 0.00017 20.2 9.5 185 60-290 33-244 (252) 93 2isw_A Putative fructose-1,6-b 75.7 3 0.00013 21.1 4.2 121 99-223 58-210 (323) 94 1f6y_A 5-methyltetrahydrofolat 75.3 4.5 0.00019 20.0 14.6 191 54-266 21-232 (262) 95 2z67_A O-phosphoseryl-tRNA(SEC 74.9 4.6 0.00019 19.9 10.6 106 146-265 185-297 (456) 96 1i4n_A Indole-3-glycerol phosp 74.4 3.1 0.00013 21.0 4.0 149 89-270 80-241 (251) 97 3elf_A Fructose-bisphosphate a 73.8 2.6 0.00011 21.5 3.5 33 167-199 180-213 (349) 98 3f0h_A Aminotransferase; RER07 73.6 2.7 0.00011 21.4 3.5 88 134-228 97-185 (376) 99 1o5k_A DHDPS, dihydrodipicolin 73.6 4.9 0.00021 19.7 8.2 24 100-123 64-89 (306) 100 3kru_A NADH:flavin oxidoreduct 72.5 5.2 0.00022 19.5 5.2 111 134-263 156-307 (343) 101 1vrd_A Inosine-5'-monophosphat 72.4 5.2 0.00022 19.5 5.9 143 97-263 173-369 (494) 102 1vhc_A Putative KHG/KDPG aldol 72.4 5.2 0.00022 19.5 9.6 108 55-191 26-136 (224) 103 1wbh_A KHG/KDPG aldolase; lyas 71.4 5.5 0.00023 19.4 9.2 109 54-191 24-135 (214) 104 1f6k_A N-acetylneuraminate lya 70.7 5.7 0.00024 19.3 8.8 113 45-192 74-188 (293) 105 1x60_A Sporulation-specific N- 70.5 4.5 0.00019 19.9 4.1 57 137-193 11-78 (79) 106 1zlp_A PSR132, petal death pro 69.6 6 0.00025 19.1 16.4 169 106-287 30-249 (318) 107 3lye_A Oxaloacetate acetyl hyd 69.4 6.1 0.00026 19.1 16.2 142 115-269 25-204 (307) 108 1d3g_A Dihydroorotate dehydrog 69.2 6.1 0.00026 19.1 11.6 147 36-194 56-256 (367) 109 3ffr_A Phosphoserine aminotran 69.0 4.5 0.00019 20.0 3.8 87 133-228 84-172 (362) 110 3i65_A Dihydroorotate dehydrog 68.2 6.4 0.00027 18.9 7.3 66 129-195 206-306 (415) 111 3daq_A DHDPS, dihydrodipicolin 67.9 6.5 0.00027 18.9 8.6 108 46-188 73-182 (292) 112 2gou_A Oxidoreductase, FMN-bin 67.9 4.3 0.00018 20.1 3.5 18 60-77 83-100 (365) 113 1eye_A DHPS 1, dihydropteroate 67.8 6.5 0.00027 18.9 13.7 206 54-270 25-260 (280) 114 1bif_A 6-phosphofructo-2-kinas 67.7 4.4 0.00018 20.0 3.5 14 113-126 121-134 (469) 115 1m3u_A 3-methyl-2-oxobutanoate 67.3 6.7 0.00028 18.8 14.5 155 104-268 6-186 (264) 116 1jcn_A Inosine monophosphate d 66.8 6.8 0.00029 18.8 9.4 138 97-263 191-387 (514) 117 3dz1_A Dihydrodipicolinate syn 66.7 6.9 0.00029 18.7 8.5 106 46-183 78-188 (313) 118 1xky_A Dihydrodipicolinate syn 64.2 7.6 0.00032 18.4 8.4 90 46-166 83-174 (301) 119 2r8w_A AGR_C_1641P; APC7498, d 64.0 7.7 0.00032 18.4 8.4 49 101-166 146-196 (332) 120 1rvg_A Fructose-1,6-bisphospha 63.5 7.9 0.00033 18.4 6.3 188 56-264 26-254 (305) 121 1y0e_A Putative N-acetylmannos 61.2 8.6 0.00036 18.1 7.3 165 54-264 19-205 (223) 122 3eol_A Isocitrate lyase; seatt 60.8 8.8 0.00037 18.0 7.8 153 106-290 52-209 (433) 123 1tv5_A Dhodehase, dihydroorota 60.6 8.9 0.00037 18.0 7.2 38 158-195 297-334 (443) 124 3a5f_A Dihydrodipicolinate syn 60.5 8.9 0.00037 18.0 7.9 92 45-167 71-164 (291) 125 3jr2_A Hexulose-6-phosphate sy 60.5 8.9 0.00037 18.0 9.4 178 44-264 7-195 (218) 126 3lab_A Putative KDPG (2-keto-3 59.5 9.2 0.00039 17.9 8.4 110 55-192 22-139 (217) 127 2vc6_A MOSA, dihydrodipicolina 59.3 9.3 0.00039 17.9 6.5 61 45-119 70-130 (292) 128 1cs1_A CGS, protein (cystathio 59.2 9.3 0.00039 17.9 5.4 109 148-272 105-239 (386) 129 3cwo_X Beta/alpha-barrel prote 59.2 9.3 0.00039 17.9 7.7 158 98-289 36-221 (237) 130 2r91_A 2-keto-3-deoxy-(6-phosp 58.5 9.6 0.0004 17.8 8.5 88 48-166 68-155 (286) 131 3b4u_A Dihydrodipicolinate syn 58.0 9.8 0.00041 17.7 8.6 19 138-156 139-159 (294) 132 1ad1_A DHPS, dihydropteroate s 57.9 9.8 0.00041 17.7 15.7 205 55-269 23-244 (266) 133 3ih1_A Methylisocitrate lyase; 57.6 9.9 0.00042 17.7 16.3 87 107-194 21-126 (305) 134 1thf_D HISF protein; thermophI 57.3 10 0.00042 17.7 10.0 185 60-290 32-243 (253) 135 1r30_A Biotin synthase; SAM ra 56.4 10 0.00044 17.6 9.1 182 54-264 98-311 (369) 136 3id7_A Dipeptidase; streptomyc 55.7 11 0.00045 17.5 4.1 18 178-195 135-152 (400) 137 2ehh_A DHDPS, dihydrodipicolin 55.6 11 0.00045 17.5 8.2 100 45-176 70-172 (294) 138 2v9d_A YAGE; dihydrodipicolini 55.1 11 0.00046 17.4 8.8 24 99-122 82-107 (343) 139 1uta_A FTSN, MSGA, cell divisi 55.0 3.2 0.00013 20.9 1.0 27 166-192 51-77 (81) 140 1jub_A Dihydroorotate dehydrog 54.7 11 0.00046 17.4 12.6 146 36-192 8-192 (311) 141 2v82_A 2-dehydro-3-deoxy-6-pho 54.6 11 0.00047 17.4 11.5 108 55-191 16-127 (212) 142 3noe_A DAP-A, dihydrodipicolin 54.0 11 0.00048 17.3 7.7 111 47-192 73-185 (292) 143 2og2_A Putative signal recogni 52.2 12 0.00051 17.1 9.4 93 47-156 161-264 (359) 144 1xg4_A Probable methylisocitra 51.6 12 0.00052 17.1 15.9 87 107-193 9-115 (295) 145 1w3i_A EDA, 2-keto-3-deoxy glu 51.4 12 0.00052 17.0 7.8 79 56-166 76-156 (293) 146 2pcq_A Putative dihidrodipicol 51.3 12 0.00052 17.0 7.3 94 47-173 65-160 (283) 147 2rag_A Dipeptidase; aminohydro 51.2 13 0.00053 17.0 4.0 51 144-196 136-189 (417) 148 1rj9_A FTSY, signal recognitio 50.9 13 0.00053 17.0 9.6 157 44-223 103-280 (304) 149 2ojp_A DHDPS, dihydrodipicolin 49.8 13 0.00055 16.9 7.1 19 148-166 145-163 (292) 150 1geq_A Tryptophan synthase alp 49.7 13 0.00055 16.9 7.8 192 46-266 10-223 (248) 151 3gz3_A Dihydroorotate dehydrog 49.2 13 0.00056 16.8 10.4 146 25-184 36-219 (354) 152 3nyt_A Aminotransferase WBPE; 47.9 14 0.00059 16.7 4.0 111 105-228 39-161 (367) 153 2ebn_A Endo-beta-N-acetylgluco 46.5 15 0.00062 16.5 7.5 61 50-115 99-164 (289) 154 2e7j_A SEP-tRNA:Cys-tRNA synth 45.2 15 0.00065 16.4 3.9 78 148-228 104-188 (371) 155 1dos_A Aldolase class II; lyas 44.6 7.5 0.00031 18.5 1.5 150 99-264 85-289 (358) 156 2qy9_A Cell division protein F 44.3 16 0.00067 16.3 10.7 155 45-222 101-276 (309) 157 1o66_A 3-methyl-2-oxobutanoate 44.1 16 0.00068 16.3 14.6 154 104-268 6-186 (275) 158 1yxy_A Putative N-acetylmannos 43.9 16 0.00068 16.3 10.0 137 105-264 59-216 (234) 159 3gr7_A NADPH dehydrogenase; fl 43.7 16 0.00068 16.3 7.8 97 149-263 199-307 (340) 160 3hje_A 704AA long hypothetical 43.4 16 0.00069 16.2 4.2 63 58-122 15-84 (704) 161 3b8i_A PA4872 oxaloacetate dec 43.1 17 0.0007 16.2 15.7 152 105-270 11-195 (287) 162 1xx6_A Thymidine kinase; X-RAY 42.9 17 0.0007 16.2 5.1 44 44-92 9-52 (191) 163 1ps9_A 2,4-dienoyl-COA reducta 42.8 17 0.00071 16.2 6.5 17 252-268 392-408 (671) 164 3ez4_A 3-methyl-2-oxobutanoate 42.5 17 0.00071 16.2 13.5 156 103-268 11-192 (269) 165 1f8m_A Isocitrate lyase, ICL; 41.8 17 0.00073 16.1 8.2 156 102-289 52-211 (429) 166 1wa3_A 2-keto-3-deoxy-6-phosph 41.6 17 0.00074 16.1 9.2 110 53-191 17-130 (205) 167 3cpr_A Dihydrodipicolinate syn 41.5 18 0.00074 16.1 8.5 93 45-168 86-180 (304) 168 2nuw_A 2-keto-3-deoxygluconate 41.3 18 0.00074 16.0 7.7 52 56-120 76-128 (288) 169 1pcf_A P15, transcriptional co 41.3 17 0.00072 16.1 2.9 26 276-301 41-66 (66) 170 2i5g_A Amidohydrolase; NYSGXRC 40.9 18 0.00075 16.0 4.6 136 45-191 89-246 (325) 171 3flu_A DHDPS, dihydrodipicolin 40.4 18 0.00077 15.9 8.5 112 46-192 78-191 (297) 172 1fc4_A 2-amino-3-ketobutyrate 40.1 18 0.00078 15.9 5.7 138 90-233 80-223 (401) 173 3ivs_A Homocitrate synthase, m 39.2 19 0.0008 15.8 12.6 174 52-260 55-252 (423) 174 1nqk_A Alkanesulfonate monooxy 38.8 19 0.00081 15.8 3.8 26 238-263 305-330 (381) 175 3btn_A Antizyme inhibitor 1; T 38.4 20 0.00082 15.7 4.2 143 45-196 107-274 (448) 176 3ffs_A Inosine-5-monophosphate 38.2 20 0.00083 15.7 5.4 114 122-262 143-274 (400) 177 1p9l_A Dihydrodipicolinate red 38.0 20 0.00084 15.7 4.6 11 218-228 97-107 (245) 178 2f6u_A GGGPS, (S)-3-O-geranylg 37.4 20 0.00085 15.6 5.9 53 188-264 165-219 (234) 179 2axn_A 6-phosphofructo-2-kinas 36.6 21 0.00087 15.6 2.8 27 169-196 361-391 (520) 180 1vzw_A Phosphoribosyl isomeras 36.6 21 0.00088 15.6 10.4 187 61-289 35-240 (244) 181 2fuv_A Phosphoglucomutase; str 36.2 21 0.00089 15.5 4.2 179 56-268 60-267 (549) 182 1m5w_A Pyridoxal phosphate bio 36.2 21 0.00089 15.5 2.9 17 124-140 137-154 (243) 183 1yad_A Regulatory protein TENI 35.8 21 0.0009 15.5 3.5 183 36-271 10-204 (221) 184 2o7s_A DHQ-SDH, bifunctional 3 35.6 22 0.00091 15.5 10.1 129 46-192 5-154 (523) 185 3nav_A Tryptophan synthase alp 35.0 22 0.00093 15.4 7.6 217 46-292 25-266 (271) 186 2aam_A Hypothetical protein TM 33.6 23 0.00098 15.3 4.7 99 147-261 165-278 (309) 187 2yw3_A 4-hydroxy-2-oxoglutarat 33.6 23 0.00098 15.2 7.8 107 55-191 22-130 (207) 188 3jxe_A Tryptophanyl-tRNA synth 33.5 23 0.00098 15.2 2.8 24 58-81 131-154 (392) 189 1w1z_A Delta-aminolevulinic ac 32.8 24 0.001 15.2 5.7 111 5-126 5-128 (328) 190 3i4e_A Isocitrate lyase; struc 32.8 24 0.001 15.2 8.4 160 102-290 52-216 (439) 191 1gte_A Dihydropyrimidine dehyd 32.0 25 0.001 15.1 12.1 95 98-194 616-737 (1025) 192 3o6c_A PNP synthase, pyridoxin 31.9 25 0.001 15.1 3.0 96 143-269 50-156 (260) 193 1jvn_A Glutamine, bifunctional 31.5 25 0.0011 15.0 4.1 155 102-290 314-545 (555) 194 3frk_A QDTB; aminotransferase, 31.2 25 0.0011 15.0 6.8 114 102-228 37-162 (373) 195 2hjp_A Phosphonopyruvate hydro 31.0 26 0.0011 15.0 16.1 84 107-191 7-109 (290) 196 2l2q_A PTS system, cellobiose- 30.6 26 0.0011 14.9 3.2 61 106-166 23-84 (109) 197 3dv9_A Beta-phosphoglucomutase 30.5 18 0.00077 15.9 1.7 48 249-299 195-245 (247) 198 3eb2_A Putative dihydrodipicol 30.3 26 0.0011 14.9 9.1 91 45-166 74-166 (300) 199 1v5x_A PRA isomerase, phosphor 30.2 26 0.0011 14.9 5.2 193 52-295 6-200 (203) 200 1e2b_A Enzyme IIB-cellobiose; 30.0 17 0.00072 16.1 1.5 56 107-163 23-78 (106) 201 2qiw_A PEP phosphonomutase; NP 29.9 27 0.0011 14.9 12.6 177 105-287 10-228 (255) 202 3js3_A 3-dehydroquinate dehydr 29.8 27 0.0011 14.8 18.2 226 24-292 4-254 (258) 203 1qgn_A Protein (cystathionine 29.5 27 0.0011 14.8 4.0 189 70-272 64-301 (445) 204 1mdo_A ARNB aminotransferase; 29.0 17 0.0007 16.2 1.2 112 106-229 44-166 (393) 205 1zj6_A ADP-ribosylation factor 29.0 28 0.0012 14.8 3.3 13 47-59 20-32 (187) 206 2po3_A 4-dehydrase; external a 29.0 24 0.00099 15.2 2.0 174 105-290 56-262 (424) 207 2dr1_A PH1308 protein, 386AA l 28.8 28 0.0012 14.7 4.9 89 135-228 98-187 (386) 208 3gk0_A PNP synthase, pyridoxin 28.5 28 0.0012 14.7 3.1 153 103-298 40-210 (278) 209 1w5q_A Delta-aminolevulinic ac 28.2 29 0.0012 14.7 6.1 81 43-126 40-132 (337) 210 3l5l_A Xenobiotic reductase A; 28.0 29 0.0012 14.6 11.0 71 149-222 213-300 (363) 211 3ilk_A Uncharacterized tRNA/RR 27.9 29 0.0012 14.6 4.2 21 53-73 14-34 (244) 212 2w6r_A Imidazole glycerol phos 27.8 29 0.0012 14.6 8.8 166 60-263 32-229 (266) 213 3fkr_A L-2-keto-3-deoxyarabona 27.8 29 0.0012 14.6 8.8 99 46-172 79-179 (309) 214 3ewb_X 2-isopropylmalate synth 27.7 29 0.0012 14.6 11.2 111 155-289 131-250 (293) 215 2oga_A Transaminase; PLP-depen 27.6 29 0.0012 14.6 8.5 116 101-228 63-189 (399) 216 2wkj_A N-acetylneuraminate lya 27.4 30 0.0012 14.6 9.0 27 98-124 61-89 (303) 217 1vyr_A Pentaerythritol tetrani 27.0 30 0.0013 14.5 8.5 94 149-263 216-323 (364) 218 2bmb_A Folic acid synthesis pr 26.8 30 0.0013 14.5 11.5 205 55-269 246-529 (545) 219 2huf_A Alanine glyoxylate amin 26.8 30 0.0013 14.5 5.2 87 134-229 96-186 (393) 220 2vt1_B Surface presentation of 26.7 22 0.00093 15.4 1.5 67 76-156 6-73 (93) 221 1ibj_A CBL, cystathionine beta 26.3 31 0.0013 14.4 3.4 121 135-271 171-318 (464) 222 3bc8_A O-phosphoseryl-tRNA(SEC 26.2 31 0.0013 14.4 7.4 105 147-265 154-265 (450) 223 3k30_A Histamine dehydrogenase 25.9 31 0.0013 14.4 3.5 52 104-155 283-338 (690) 224 3nbm_A PTS system, lactose-spe 25.8 31 0.0013 14.4 3.3 60 107-166 26-86 (108) 225 2pod_A Mandelate racemase / mu 25.7 32 0.0013 14.4 5.9 58 157-223 213-271 (410) 226 2qq6_A Mandelate racemase/muco 25.7 32 0.0013 14.4 6.7 123 49-176 142-278 (410) 227 3dlu_A SRP19, signal recogniti 25.6 28 0.0012 14.7 1.9 50 218-267 7-59 (106) 228 1qwg_A PSL synthase;, (2R)-pho 25.4 32 0.0013 14.3 9.0 26 169-194 145-170 (251) 229 1a9x_A Carbamoyl phosphate syn 25.1 32 0.0014 14.3 4.4 149 111-269 108-291 (1073) 230 1dbt_A Orotidine 5'-phosphate 25.0 33 0.0014 14.3 11.5 64 121-184 11-80 (239) 231 2yyu_A Orotidine 5'-phosphate 24.9 33 0.0014 14.3 9.7 72 52-142 11-90 (246) 232 1f06_A MESO-diaminopimelate D- 24.9 33 0.0014 14.3 5.7 47 134-180 58-104 (320) 233 2qv6_A MJ0145, GTP cyclohydrol 24.9 33 0.0014 14.3 2.6 23 97-119 63-85 (268) 234 2z6i_A Trans-2-enoyl-ACP reduc 24.5 33 0.0014 14.2 12.5 134 104-264 52-192 (332) 235 2f9i_A Acetyl-coenzyme A carbo 24.5 32 0.0014 14.3 2.1 84 99-196 145-230 (327) 236 2cb1_A O-acetyl homoserine sul 24.4 33 0.0014 14.2 3.0 41 184-226 138-179 (412) 237 3ly0_A Dipeptidase AC. metallo 24.2 34 0.0014 14.2 4.8 27 241-267 282-308 (364) 238 2him_A L-asparaginase 1; hydro 23.8 34 0.0014 14.1 6.2 41 156-196 127-174 (358) 239 2vy9_A Anti-sigma-factor antag 23.7 2.2 9.3E-05 22.0 -4.0 25 247-271 66-90 (123) 240 2czd_A Orotidine 5'-phosphate 23.2 35 0.0015 14.1 7.6 90 54-163 8-105 (208) 241 3gka_A N-ethylmaleimide reduct 23.2 35 0.0015 14.1 3.4 17 246-262 298-315 (361) 242 2z0f_A Putative phosphoglucomu 23.2 35 0.0015 14.1 4.3 181 56-269 41-247 (524) 243 3crm_A TRNA delta(2)-isopenten 22.9 36 0.0015 14.0 2.7 86 43-133 5-112 (323) 244 2cqy_A Propionyl-COA carboxyla 22.8 36 0.0015 14.0 4.5 62 199-265 26-95 (108) 245 1w96_A ACC, acetyl-coenzyme A 22.6 36 0.0015 14.0 4.3 47 149-195 225-280 (554) 246 2vpq_A Acetyl-COA carboxylase; 22.6 36 0.0015 14.0 11.3 47 149-196 142-202 (451) 247 3ic5_A Putative saccharopine d 22.5 36 0.0015 14.0 5.9 45 118-162 53-97 (118) 248 3ajx_A 3-hexulose-6-phosphate 22.3 37 0.0015 14.0 9.4 179 52-271 7-198 (207) 249 1o94_A Tmadh, trimethylamine d 22.1 37 0.0016 13.9 5.0 53 103-155 279-335 (729) 250 2c81_A Glutamine-2-deoxy-scyll 21.9 37 0.0016 13.9 7.6 122 94-228 36-168 (418) 251 1ujp_A Tryptophan synthase alp 21.8 37 0.0016 13.9 6.1 191 46-266 21-232 (271) 252 2ekc_A AQ_1548, tryptophan syn 21.8 37 0.0016 13.9 7.6 212 46-292 22-257 (262) 253 3kgw_A Alanine-glyoxylate amin 21.5 38 0.0016 13.9 5.1 90 133-228 99-189 (393) 254 1w4r_A Thymidine kinase; type 21.5 38 0.0016 13.9 5.6 102 45-192 22-123 (195) 255 3o1n_A 3-dehydroquinate dehydr 21.4 38 0.0016 13.8 19.8 225 25-292 25-274 (276) 256 1o69_A Aminotransferase; struc 21.4 38 0.0016 13.8 10.1 118 102-228 33-160 (394) 257 2pa6_A Enolase; glycolysis, ly 21.4 38 0.0016 13.8 9.8 94 101-195 270-369 (427) 258 3lg3_A Isocitrate lyase; conse 21.2 38 0.0016 13.8 8.0 23 120-142 70-93 (435) 259 3hnn_A Putative diflavin flavo 21.1 20 0.00086 15.6 0.5 42 35-82 44-86 (262) 260 3dxi_A Putative aldolase; TIM 21.1 39 0.0016 13.8 4.2 184 56-267 22-220 (320) 261 2px0_A Flagellar biosynthesis 20.7 40 0.0017 13.7 9.8 159 41-222 103-271 (296) 262 2ip1_A Tryptophanyl-tRNA synth 20.6 40 0.0017 13.7 3.1 17 107-123 127-143 (432) 263 3hv0_A Tryptophanyl-tRNA synth 20.5 40 0.0017 13.7 3.4 17 109-125 101-117 (393) 264 1qop_A Tryptophan synthase alp 20.4 40 0.0017 13.7 7.5 217 46-292 22-263 (268) 265 4pga_A Glutaminase-asparaginas 20.4 40 0.0017 13.7 4.9 18 248-265 237-254 (337) 266 2ch1_A 3-hydroxykynurenine tra 20.3 40 0.0017 13.7 4.9 148 43-228 18-184 (396) No 1 >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... Probab=100.00 E-value=0 Score=672.97 Aligned_cols=257 Identities=48% Similarity=0.843 Sum_probs=251.2 Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE Q ss_conf 706999548634999999999999999655339-9706601557688666322245671248889998866528768852 Q gi|254780669|r 43 QRFVLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTD 121 (301) Q Consensus 43 ~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~Te 121 (301) ++|++||||||+||+||++++|+.++++++++. ++++||+||||+|||||+||||+|+++||+||+++|++||+||+|| T Consensus 2 ~~~~iIAGPCsvEs~e~~~~~A~~lk~~~~~~~~~~~i~r~~~~K~nRTsp~sf~G~G~e~gL~~l~~ik~~~gl~v~TE 81 (267) T 2nwr_A 2 EKFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTD 81 (267) T ss_dssp CCEEEEEECSBCSCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEE T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEH T ss_conf 87549950782049999999999999999860777647525777877898765567878999999999999839843103 Q ss_pred CCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH Q ss_conf 28899998765021578822576289999999850597799836777899999999999972587808995146544401 Q gi|254780669|r 122 VHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYN 201 (301) Q Consensus 122 V~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~ 201 (301) ||+++|+|.+++++|+|||||||||||+||+++|+|+|||++|||||+|++||++|+||+.+.||++|++||||++|||+ T Consensus 82 V~~~~~ve~~~e~vDilQIgAr~~~n~~Ll~~~a~t~kpV~lKkg~~~s~~e~~~a~e~i~~~Gn~~v~lceRG~~~~y~ 161 (267) T 2nwr_A 82 IHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGYN 161 (267) T ss_dssp CSSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEECSSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC T ss_conf 32056688999760098876888059899999986398423334566898888749999996799879995376446764 Q ss_pred HHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCH Q ss_conf 00000001068885187168711777421223453212638899999999997189889998369833479782018688 Q gi|254780669|r 202 TLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINI 281 (301) Q Consensus 202 ~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l 281 (301) ++++|+|+++.||+.. |||+|||||+|+|++.++.++|+|+|++++|+||+++|+|||||||||||++|||||+|||+| T Consensus 162 ~l~~d~~~~~~~k~~~-~vi~D~shs~q~p~~~~~~s~G~r~~v~~la~aA~a~G~dGl~iE~H~dP~~AlsD~~q~l~~ 240 (267) T 2nwr_A 162 NLVVDFRSLPIMKQWA-KVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL 240 (267) T ss_dssp CEECCTTHHHHHTTTS-EEEEETTGGGCCTTC------CCGGGHHHHHHHHHHHCCSEEEEEEESCGGGCSSCTTTCEEG T ss_pred CCCCCHHHHHHHHHCC-CCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCH T ss_conf 3243104469987357-520016745568888787310107669999999998399879998379834367860027799 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999998851 Q gi|254780669|r 282 KDLPKLLSQLLAIDKIIKP 300 (301) Q Consensus 282 ~~l~~ll~~l~~i~~~vk~ 300 (301) ++|++|++++++|++++++ T Consensus 241 ~~l~~ll~~l~~i~~~~~k 259 (267) T 2nwr_A 241 SQLEGIIEAILEIREVASK 259 (267) T ss_dssp GGHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999984 No 2 >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for structural genomics, JCSG; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* Probab=100.00 E-value=0 Score=668.22 Aligned_cols=269 Identities=28% Similarity=0.488 Sum_probs=254.8 Q ss_pred CCCCCCCHHHHHHCCCCCCEEEECCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 97775203445430468761783177068357877279769970699954863499999999999999965533997066 Q gi|254780669|r 1 MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVY 80 (301) Q Consensus 1 ~~i~~pykl~~~~~~i~~~~~~~~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~if 80 (301) +||++||||++|+++.+. +.+++ ++++|||++ |++|||||++||+||++++|+.+++++.+++|+++| T Consensus 75 ~~i~~pykl~sr~~~~~~-------s~i~v----~~v~iG~~~-l~lIAGPC~vEs~e~~~~~A~~lk~~g~~~~r~g~f 142 (350) T 1vr6_A 75 VRVLKPYKLVSREFHPED-------TVIDL----GDVKIGNGY-FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAY 142 (350) T ss_dssp EECSCSCCTTBTTTCCSC-------CCEEC----SSCEESTTE-EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSC T ss_pred EECCCCHHHHHCCCCCCC-------CEEEE----CCEEECCCC-EEEEECCCHHCCHHHHHHHHHHHHHHCCCCCCCCEE T ss_conf 775875334423138899-------78997----999988976-689975263258999999999989834101346630 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCE Q ss_conf 01557688666322245671248889998866528768852288999987650215788225762899999998505977 Q gi|254780669|r 81 KSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRV 160 (301) Q Consensus 81 K~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kp 160 (301) || |||++||||+| ++||+||+++|++||+||+||||+++|++.+++++||||||||||||||||+|+|+|+|| T Consensus 143 Kp------RTsp~sfqG~G-e~GL~iL~~vk~~~glpiiTdVh~~~qv~~vae~vDiLQIpA~l~~n~dLL~aag~t~kp 215 (350) T 1vr6_A 143 KP------RTSPYSFQGLG-EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKP 215 (350) T ss_dssp CC------CCSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHTTCSC T ss_pred CC------CCCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCEEEECCHHCCCHHHHHHHHHCCCC T ss_conf 15------67873356760-889999999998659806898433253788750031699760213787999998851994 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCC Q ss_conf 9983677789999999999997258780899514654--440100000001068885-1871687117774212234532 Q gi|254780669|r 161 INVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTS--FGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNC 237 (301) Q Consensus 161 V~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~--fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~ 237 (301) ||||||||+|++||++|+||+.+.||+||||||||++ |+|+++++|++++|+||+ +++|||+|||||+ T Consensus 216 V~lKkG~~~s~~e~l~aaE~i~~~GN~~viLcERG~~tf~~~~r~~lD~~~i~~~k~~t~lPVI~DpSHs~--------- 286 (350) T 1vr6_A 216 VLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSG--------- 286 (350) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHH--------- T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHCCHHHHHCCCCCEEECCCCCC--------- T ss_conf 89417554899998778999973599649998577345577770584011127888567997798998888--------- Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 12638899999999997189889998369833479782018688999999999999999885 Q gi|254780669|r 238 SGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIK 299 (301) Q Consensus 238 ~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~~~vk 299 (301) |+|+||++|||||+|+|+||||+||||||++|+|||+|||+|++|++|++++++|+++|. T Consensus 287 --G~r~~v~~larAAvA~GaDGlfiE~Hp~P~~AlsDg~q~l~l~~l~~ll~~l~~i~~~vg 346 (350) T 1vr6_A 287 --GRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALG 346 (350) T ss_dssp --CSGGGHHHHHHHHHHHTCSEEEEEBCSCGGGCSSCGGGCBCHHHHHHHHHHHHHHHHHHT T ss_pred --CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf --775169999999998299889997088801078884024799999999999999999966 No 3 >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Probab=100.00 E-value=0 Score=619.26 Aligned_cols=247 Identities=32% Similarity=0.532 Sum_probs=236.4 Q ss_pred CCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 77068357877279769970699954863499999999999999965533997066015576886663222456712488 Q gi|254780669|r 25 NAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGR 104 (301) Q Consensus 25 ~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL 104 (301) ++.+++| +++||+ +|++|||||++||+|+++++|+.++++|.++.|+++||| |||++||||+| ++|| T Consensus 10 ~~~v~ig----~i~iG~--~~~lIAGPC~iEs~e~~~~iA~~lk~~~~~~~~~~~fK~------Rts~~s~~g~g-~~gl 76 (262) T 1zco_A 10 KTVVKIN----DVKFGE--GFTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKP------RTSPYSFQGYG-EKAL 76 (262) T ss_dssp CCCEEET----TEEETS--SCEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCC------CSSTTSCCCCT-HHHH T ss_pred CCEEEEC----CEEECC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCCCCC------CCCCCCCCCCH-HHHH T ss_conf 9889979----999889--857998677116999999999999996242043653357------68843256761-5889 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 89998866528768852288999987650215788225762899999998505977998367778999999999999725 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) +||+++|++||+||+||||+++|++.+++++||||||||||||||||+|+|+|+||||||||||+||+||++++||+.+. T Consensus 77 ~~l~~ik~~~glpv~TdVh~~~q~e~~~~vvDilQIpAfl~rqtdLl~aaa~t~kpV~lKkgq~~s~~~~~~a~eki~~~ 156 (262) T 1zco_A 77 RWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGARNSQNFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQ 156 (262) T ss_dssp HHHHHHHHHHTCEEEEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHCEEEEECCHHHCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 99998776549727985284777788740030589572541106999988724982897367777778999999999857 Q ss_pred CCCCEEEEECC--CCCCCHHHCCCCCCCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 87808995146--544401000000010688851-871687117774212234532126388999999999971898899 Q gi|254780669|r 185 GAKDVLFCERG--TSFGYNTLVTDMRSIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIF 261 (301) Q Consensus 185 Gn~~i~lcERG--~~fgy~~lvvD~~~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlf 261 (301) ||++||+|||| ++|+|+++++|++++++||+. ++|||+|||||. |+|+|++++||||+++|+|||| T Consensus 157 Gn~~i~l~eRG~~t~~~~~~~~~D~~~i~~~k~~~~~pvi~D~shs~-----------G~r~~v~~la~aa~a~G~dGlf 225 (262) T 1zco_A 157 GNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPA-----------GRRSLVIPLAKAAYAIGADGIM 225 (262) T ss_dssp TCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTT-----------CSGGGHHHHHHHHHHTTCSEEE T ss_pred CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCC-----------CCHHHHHHHHHHHHHHCCCEEE T ss_conf 99789999726445344432454125549998602897211798766-----------6676799999999982999899 Q ss_pred EEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 9836983347978201868899999999999999 Q gi|254780669|r 262 LETHQDPDNAPSDGPNMINIKDLPKLLSQLLAID 295 (301) Q Consensus 262 iE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~ 295 (301) +||||||++|+|||+|||+|++|++|++++++|+ T Consensus 226 iE~Hp~P~~A~sD~~~~l~l~~l~~ll~~i~~i~ 259 (262) T 1zco_A 226 VEVHPEPEKALSDSQQQLTFDDFLQLLKELEALG 259 (262) T ss_dssp EEBCSSGGGCSSCTTTCBCHHHHHHHHHHHHHTT T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9818780217887413679999999999999986 No 4 >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} Probab=100.00 E-value=0 Score=590.95 Aligned_cols=268 Identities=26% Similarity=0.459 Sum_probs=246.9 Q ss_pred CCCCHHHHHHCCCCCCEEEECCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 75203445430468761783177068357877279769970699954863499999999999999965533997066015 Q gi|254780669|r 4 LYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSS 83 (301) Q Consensus 4 ~~pykl~~~~~~i~~~~~~~~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~s 83 (301) ...|.+.+|+.+ ..++.+.+| ++.||++++ ++|||||++||+|+++++|+.++++|.++.|+++||| T Consensus 114 ~~~~l~~~r~~~-------~~~t~i~i~----~~~~G~~~~-~~IaGPCsiEs~e~~~~~A~~lk~~~~~~~r~~~fk~- 180 (385) T 3nvt_A 114 HSKALLVSRKNK-------KEDTIVTVK----GLPIGNGEP-VFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKP- 180 (385) T ss_dssp CTTSCTTBTTTC-------CSCCCEEET----TEEETSSSC-EEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCC- T ss_pred CCCCCCCCCCCC-------CCCCEEEEC----CEEECCCCE-EEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCEECC- T ss_conf 545346677667-------899889989----999879987-8998788238999999999999866971897441468- Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEE Q ss_conf 57688666322245671248889998866528768852288999987650215788225762899999998505977998 Q gi|254780669|r 84 FDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINV 163 (301) Q Consensus 84 fdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~i 163 (301) |||++||||+|+ +||+||++++++||+|++||||+++|++.++++||++|||||+||||+||+++|+++|||++ T Consensus 181 -----RTs~~sf~G~G~-egL~il~~i~~~~Glpv~Tev~d~~~~~~v~e~vDilqI~A~~~~n~~Ll~~~a~t~kpV~l 254 (385) T 3nvt_A 181 -----RTSPYDFQGLGL-EGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELLKAAGRVDKPILL 254 (385) T ss_dssp -----CSSTTSCCCCTH-HHHHHHHHHHHHHTCEEEEECCSGGGHHHHTTTCSEEEECGGGTTCHHHHHHHHTSSSCEEE T ss_pred -----CCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCEEEECCHHCCCHHHHHHHHCCCCCEEE T ss_conf -----999867578658-99999999998649974663110131799986375466360002479999998705983894 Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCC Q ss_conf 3677789999999999997258780899514654--440100000001068885-1871687117774212234532126 Q gi|254780669|r 164 KKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTS--FGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGG 240 (301) Q Consensus 164 Kkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~--fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG 240 (301) |||||+++++|++|+|++.+.||.++++||||++ |+|.++.+|+++++.||+ +++|||+|||||+ | T Consensus 255 KkG~~~s~~~~~~a~e~i~~~GN~~i~l~eRG~~~~~~~~~~~ld~~~i~~lk~~~~~PVi~D~SHs~-----------G 323 (385) T 3nvt_A 255 KRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHST-----------G 323 (385) T ss_dssp ECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHH-----------C T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCC-----------C T ss_conf 58887999999999999995599963387577678999876675466699997378999899698768-----------8 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 3889999999999718988999836983347978201868899999999999999988519 Q gi|254780669|r 241 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKPL 301 (301) Q Consensus 241 ~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~~~vk~l 301 (301) +|+|++++|+||+++|+||||+|+||||++|+||++|||+|++|++|++++++++.+.+++ T Consensus 324 ~~~~v~~la~AAva~G~dGl~iE~H~dP~~A~sD~~~~l~~~el~~ll~~i~~~~~v~~~~ 384 (385) T 3nvt_A 324 RKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDSAQQMDIPEFEEFWNAILASNLVPHKI 384 (385) T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEBCSCGGGCSSCTTTSBCHHHHHHHHHHHHHHTCCC--- T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 8315999999999958998999806880006897111389999999999999999886346 No 5 >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} Probab=100.00 E-value=0 Score=542.10 Aligned_cols=279 Identities=62% Similarity=1.074 Sum_probs=271.2 Q ss_pred CEEEECCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 61783177068357877279769970699954863499999999999999965533997066015576886663222456 Q gi|254780669|r 19 NHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGV 98 (301) Q Consensus 19 ~~~~~~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~ 98 (301) ......++.++|| ++.||+++|++||||||++||+|+++++|+.+++.++++.|+++|||+|++++|+++++|+|. T Consensus 20 ~~~~~~~~~i~ig----~~~iG~~~pl~IIAGpcs~e~~e~~le~A~~lk~~g~~~~r~~~~Kp~t~~~~~~~~~~~~~~ 95 (298) T 3fs2_A 20 GSMVTANSTVKVG----NVTFSNSAPLALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGI 95 (298) T ss_dssp ----CCCSSEEET----TEEECTTSCCEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------C T ss_pred CCCCCCCCEEEEC----CEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCC T ss_conf 7644589869989----999889980699970685579999999999999988884858299178777666778775768 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH Q ss_conf 71248889998866528768852288999987650215788225762899999998505977998367778999999999 Q gi|254780669|r 99 GLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNIL 178 (301) Q Consensus 99 Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~ 178 (301) |++++|+||+++++++|+|+.||++++.+++.++++||++|||||+|+|++||+++|+++|||++||||++|+++|++|+ T Consensus 96 g~~~~l~~l~~~~~e~gl~~~Te~~d~~~~~~~~~~vd~~kIga~~~~n~~Ll~~~a~t~kPV~lk~G~~~s~~e~~~Av 175 (298) T 3fs2_A 96 GLEKALEVFSDLKKEYGFPVLTDIHTEEQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVNVKKGQFLAPWDMKNVL 175 (298) T ss_dssp CHHHHHHHHHHHHHHHCCCEEEECCSHHHHHHHTTTCSEEEECGGGTTCHHHHHHHHHTTSEEEEECCTTCCGGGHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHH T ss_conf 88999999999999849943343366888987502355145333114687999999871995662267889989998788 Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 99972587808995146544401000000010688851871687117774212234532126388999999999971898 Q gi|254780669|r 179 QKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIA 258 (301) Q Consensus 179 eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~d 258 (301) ||+.+.||+|+++||||++|+|++.++|++.++.|++...|+++|++|++|.+...++.++|+|+||+++++||+++|+| T Consensus 176 e~i~~~Gn~~v~l~~rg~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~g~~~~v~~~a~aAva~Ga~ 255 (298) T 3fs2_A 176 AKITESGNPNVLATERGVSFGYNTLVSDMRALPIMAGLGAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVA 255 (298) T ss_dssp HHHHTTTCCCEEEEECCEECSSSCEECCTTHHHHHHTTTSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCS T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 99984798649982885234899874661578999985897312466544898689841165898999999999980999 Q ss_pred EEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8999836983347978201868899999999999999988519 Q gi|254780669|r 259 GIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKPL 301 (301) Q Consensus 259 GlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~~~vk~l 301 (301) |||||+||+|++|+||++|||+|++|++|++++++|++++|++ T Consensus 256 Gl~IE~H~~Pd~alsD~~q~l~p~el~~ll~~ir~i~~~~k~~ 298 (298) T 3fs2_A 256 GFFIETHEDPDNAPSDGPNMVPIDKMPALLEKLMAFDRIAKAL 298 (298) T ss_dssp EEEEEEESSGGGCSSSGGGCEEGGGHHHHHHHHHHHHHHHTTC T ss_pred EEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 8999927980105788655679999999999999999998629 No 6 >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} Probab=100.00 E-value=0 Score=464.79 Aligned_cols=262 Identities=25% Similarity=0.408 Sum_probs=239.8 Q ss_pred CCCCHHHHHHCCCCCCEEEECCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 75203445430468761783177068357877279769970699954863499999999999999965533997066015 Q gi|254780669|r 4 LYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSS 83 (301) Q Consensus 4 ~~pykl~~~~~~i~~~~~~~~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~s 83 (301) -++||+..|..+ ..++.++| ++++||+++| ++|||||++||+++++++|+.++++|.++.+.++||+ T Consensus 10 ~~~~k~~~~~~~-------~~~~~I~i----~g~~iG~~~p-~iIAGpc~iEs~e~~~~~a~~~k~~~~~~~~~~~~k~- 76 (276) T 1vs1_A 10 FKGVKLALKSEE-------RRETVVEV----EGVRIGGGSK-AVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKP- 76 (276) T ss_dssp CSSCSTTBCCSS-------CSCCCEEE----TTEEEBTTBC-EEEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCC- T ss_pred CCCCEEEECCCC-------CCCCEEEE----CCEEECCCCE-EEEEECCHHCCHHHHHHHHHHHHHHCHHHCCCCCCCC- T ss_conf 777064104578-------88988997----9999889975-8998676224999999999999984501132554457- Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEE Q ss_conf 57688666322245671248889998866528768852288999987650215788225762899999998505977998 Q gi|254780669|r 84 FDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINV 163 (301) Q Consensus 84 fdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~i 163 (301) |||++||||+|+ ++|++|.++++++|+|++||||+++|++.++++||++|||||+|+||+||+++|+|+|||+| T Consensus 77 -----r~s~~s~~g~~~-~~l~~l~~~~~~~~~~i~Tdvhe~~~~~~~~~~vdi~kI~S~~~~n~~LL~~ia~t~Kpvil 150 (276) T 1vs1_A 77 -----RTSPYSFQGLGL-EGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLREVGRSGKPVLL 150 (276) T ss_dssp -----CSSTTSCCCCTH-HHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHHCSEEEECGGGTTCHHHHHHHHHHTCCEEE T ss_pred -----CCCCCCCCCCHH-HHHHHHHHHHHHHCCCEEEECCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEE T ss_conf -----768544457218-88999985578759833575176366553151100898535100189999999973971996 Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH--HHCCCCCCCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCC Q ss_conf 36777899999999999972587808995146544401--000000010688851-871687117774212234532126 Q gi|254780669|r 164 KKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYN--TLVTDMRSIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGG 240 (301) Q Consensus 164 Kkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~--~lvvD~~~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG 240 (301) |+|||.++++|..+++++...||+++++||||++++|. ....|.+.++.|++. ..|++.|++|+. | T Consensus 151 stG~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g 219 (276) T 1vs1_A 151 KRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHLPVIVDPSHPA-----------G 219 (276) T ss_dssp ECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSSCEEECCHHHH-----------C T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-----------C T ss_conf 67776748899999999985597167775313446777652210222389998767998757777678-----------8 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 38899999999997189889998369833479782018688999999999999999 Q gi|254780669|r 241 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDK 296 (301) Q Consensus 241 ~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~~ 296 (301) ++++++++|+||+++|+||+|||+||+|++|+||++++++|++|++|+++++ +++ T Consensus 220 ~~~~i~~la~AAva~GA~g~~IEkH~t~dkalsD~~~sl~p~el~~lv~~ir-~~k 274 (276) T 1vs1_A 220 RRSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAKQQLTPGEFARLMGELR-WHR 274 (276) T ss_dssp SGGGHHHHHHHHHHTTCSEEEEEBCSSGGGCSSCGGGCBCHHHHHHHHHHHH-HTT T ss_pred CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHCCCHHHHHHHHHHHH-HHH T ss_conf 6243699999999939997999959896558997032089999999999976-874 No 7 >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A Probab=100.00 E-value=0 Score=351.92 Aligned_cols=274 Identities=44% Similarity=0.779 Sum_probs=256.8 Q ss_pred CCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHH Q ss_conf 17706835787727976997069995486349999999999999996553399706601557688666322245671248 Q gi|254780669|r 24 TNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKG 103 (301) Q Consensus 24 ~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~g 103 (301) .++.++| +++.||+++|++||||||..+|.|+++++|+.+++.|++..+..+|||.+.+.+|++.++++..+.++. T Consensus 2 ~~~~i~I----g~~~ig~~~p~~IIAG~nh~gs~~~a~~la~~a~~~gada~k~q~~k~~~~~~~~~~~~~~~~~~~~e~ 77 (292) T 1o60_A 2 QNKIVKI----GNIDVANDKPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEG 77 (292) T ss_dssp CCCCEEE----TTEEECTTSCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHH T ss_pred CCCEEEE----CCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCHHHH T ss_conf 9868997----999989999159996488657999999999999998876272619808866444555200025676999 Q ss_pred HHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 88999886652876885228899998765021578822576289999999850597799836777899999999999972 Q gi|254780669|r 104 REIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHA 183 (301) Q Consensus 104 L~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~ 183 (301) ++++.+.++++++++.|+++++.+.+.+.+++|++|||++.++|++||++++++++|+++++|++.++++|..+++++.+ T Consensus 78 l~~~~~~~~~~~i~~~t~~~~~~~~~~l~~~v~~~kI~S~~~~n~~ll~~~a~~~kpvilstG~~~~~e~~~~~~~~i~~ 157 (292) T 1o60_A 78 LKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEE 157 (292) T ss_dssp HHHHHHHHHHHCCEEEEECCSGGGHHHHHTTCSEEEECGGGTTCHHHHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 99999988723974102312187999987247220341111216899999997099569824665789999999999985 Q ss_pred CCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHH--CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 587808995146544401000000010688851--871687117774212234532126388999999999971898899 Q gi|254780669|r 184 HGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSM--GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIF 261 (301) Q Consensus 184 ~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~--~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlf 261 (301) .||.++++|+|++.+++.+..++++.+..++.. ..|.+.|.+|..+.........++.+++.+++++||+++|++|+| T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aAva~Ga~g~i 237 (292) T 1o60_A 158 CGNDKIILCDRGTNFGYDNLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLF 237 (292) T ss_dssp TTCCCEEEEECCEECSTTCEECCTTHHHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEE T ss_pred CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEE T ss_conf 39962036664244688753014088889998632344311234542123333333345432214789999980999799 Q ss_pred EEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9836983347978201868899999999999999988519 Q gi|254780669|r 262 LETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKPL 301 (301) Q Consensus 262 iE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~~~vk~l 301 (301) ||.|++|++++||++++|+|++|+.|+++++.|++++|+. T Consensus 238 IEkH~tldk~~~D~~~Sl~p~el~~lv~~ir~i~~~ik~~ 277 (292) T 1o60_A 238 LEAHPNPNQAKCDGPSALPLSALEGFVSQMKAIDDLVKSF 277 (292) T ss_dssp EEEESSGGGCSSCCTTCEEGGGHHHHHHHHHHHHHHHHHS T ss_pred EEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 9968880006886001469999999999999999998656 No 8 >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 kdops; 1.75A {Neisseria meningitidis serogroup B} PDB: 3fyo_A* 3fyp_A* 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* Probab=100.00 E-value=0 Score=342.17 Aligned_cols=266 Identities=44% Similarity=0.765 Sum_probs=254.9 Q ss_pred CCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 72797699706999548634999999999999999655339970660155768866632224567124888999886652 Q gi|254780669|r 35 NQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY 114 (301) Q Consensus 35 ~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~ 114 (301) |++.||+++|++||||||+.||.|+.+++|+.+.+..++.+.+.+...+|.+.++++..++++.+..++|+++.+.++++ T Consensus 6 ~~~~Ig~~~p~~iIAg~~~n~n~d~~le~AkkLi~~Ak~aGadaVKfQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (280) T 2qkf_A 6 NDITLGNNSPFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEF 85 (280) T ss_dssp TTEEESTTSCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHH T ss_pred CCEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 99998899926999838824598999999999999999839898998424079756854222222256899999998750 Q ss_pred CCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 87688522889999876502157882257628999999985059779983677789999999999997258780899514 Q gi|254780669|r 115 GFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCER 194 (301) Q Consensus 115 glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301) ++++.|++++..+.+...+++|++|||+|.++|++|+++++++++||++++|+..+.++|.++++++.+.||.++++|+| T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~~~n~~ll~~~~~~~~pv~l~tg~~~~~~~~~~~~~~i~s~Gn~~~~l~~~ 165 (280) T 2qkf_A 86 GIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCER 165 (280) T ss_dssp CCCEEEECCSGGGHHHHHHHCSEEEECGGGTTBHHHHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEEC T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 87523210207889999999888654455402338999988516743532777567999998999998669986388863 Q ss_pred CCCCCCHHHCCCCCCCHHHHHH--CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCC Q ss_conf 6544401000000010688851--87168711777421223453212638899999999997189889998369833479 Q gi|254780669|r 195 GTSFGYNTLVTDMRSIPIMTSM--GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAP 272 (301) Q Consensus 195 G~~fgy~~lvvD~~~i~~lk~~--~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~Al 272 (301) |+++++.....+++.+..++.. ..|++.|++|..+.+........|+++..+.++.||+|+|++|++||.|++|++++ T Consensus 166 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~aAvalGA~g~iIEkHft~dk~~ 245 (280) T 2qkf_A 166 GSSFGYDNLVVDMLGFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAK 245 (280) T ss_dssp CEECSTTCEECCTTHHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC-------- T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHCC T ss_conf 23356653211066799999861489861201010026665564224410345412599997489989999788801058 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 7820186889999999999999998851 Q gi|254780669|r 273 SDGPNMINIKDLPKLLSQLLAIDKIIKP 300 (301) Q Consensus 273 sD~~q~l~l~~l~~ll~~l~~i~~~vk~ 300 (301) ||++++|+|++|++|++.+++|++++|+ T Consensus 246 ~D~~~Sl~p~el~~lv~~ir~i~~~ik~ 273 (280) T 2qkf_A 246 CDGPSALPLHLLEDFLIRIKALDDLIKS 273 (280) T ss_dssp --------CCHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 9722257999999999999999999758 No 9 >1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A* Probab=99.84 E-value=1.7e-18 Score=141.10 Aligned_cols=249 Identities=22% Similarity=0.333 Sum_probs=180.1 Q ss_pred CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCCC--------------C Q ss_conf 2797699706999548634999999999999999655339--97066015576886663222456--------------7 Q gi|254780669|r 36 QVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLN--IGLVYKSSFDKANRSSLAGKRGV--------------G 99 (301) Q Consensus 36 ~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~--~~~ifK~sfdKanRtS~~sfrG~--------------G 99 (301) +|--|.|++|++|.|||||...+.+++.|+.|+++..++. .-.+.+..|.|. ||+. +|.|+ | T Consensus 45 ~Il~g~D~RllvIvGPCSIhD~~aa~eYA~rL~~l~~~~~d~l~iVMRvYfEKP-RTtv-GWKGli~DP~ldgs~~I~~G 122 (350) T 1n8f_A 45 KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKP-RTTV-GWKGLINDPHMDNSFQINDG 122 (350) T ss_dssp HHHTTSCCCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCCC-CSSS-SCCCTTTCTTSSSCCCHHHH T ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CCCC-CCCCCCCCCCCCCCCCHHHH T ss_conf 996599987699975887789899999999999999986176289761102688-7778-97613678887888777688 Q ss_pred CHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 12488899988665287688522889999876502157882257628999999985059779983677789999999999 Q gi|254780669|r 100 LKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQ 179 (301) Q Consensus 100 le~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~e 179 (301) +..+.++|.++ .+.|+|+.||..++.....+++.+-+--||||..-..-=-+-++...-||-+|+|..-++.-.+.|+. T Consensus 123 l~~aR~LL~~i-~~~GlP~atE~Ldp~~pqY~~DLiswgAIGARTtESQ~HRelASgls~PVGFKN~TdG~i~vAidAi~ 201 (350) T 1n8f_A 123 LRIARKLLLDI-NDSGLPAAGEFLDMITPQYLADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAIN 201 (350) T ss_dssp HHHHHHHHHHH-HHTTCCEEEECCCSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHH T ss_pred HHHHHHHHHHH-HHCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHH T ss_conf 99999999999-86499966101145770557776665543246542478899863898850232478876589999999 Q ss_pred H------------------HHHCCCCCEEEEECCCCC-CCHHHCCCC-CCCHHHHHHCCC--EEECHHHHHHHCCCCCCC Q ss_conf 9------------------972587808995146544-401000000-010688851871--687117774212234532 Q gi|254780669|r 180 K------------------LHAHGAKDVLFCERGTSF-GYNTLVTDM-RSIPIMTSMGVP--VIFDASHSVQQPGIHGNC 237 (301) Q Consensus 180 k------------------i~~~Gn~~i~lcERG~~f-gy~~lvvD~-~~i~~lk~~~~P--Vi~D~SHs~q~p~~~~~~ 237 (301) - +...||++--+.-||-.. -|..- +. .....|++.++| |++||||+ ++++ T Consensus 202 aa~~~H~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~pNy~~~--~v~~~~~~l~~~~l~~~imIDcSHg------NS~K 273 (350) T 1n8f_A 202 AAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAK--HVAEVKEGLNKAGLPAQVMIDFSHA------NSSK 273 (350) T ss_dssp HHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCSSSCCCSHH--HHHHHHHHHHHTTCCCCEEEECSGG------GTTT T ss_pred HHHCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCHH--HHHHHHHHHHHCCCCHHHHHHCCCC------CCCH T ss_conf 9747987887478885789982699872589865888998999--9999999998869977885401377------7304 Q ss_pred C-CCCHHHHHHHHHHHHHHC---CCEEEEEECCCHHHCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1-263889999999999718---9889998369833479782-----------018688999999999999999885 Q gi|254780669|r 238 S-GGERQYIVPLAKAAVAIG---IAGIFLETHQDPDNAPSDG-----------PNMINIKDLPKLLSQLLAIDKIIK 299 (301) Q Consensus 238 ~-gG~r~~v~~la~aa~a~G---~dGlfiE~Hp~P~~AlsD~-----------~q~l~l~~l~~ll~~l~~i~~~vk 299 (301) . --+...+..++. -++.| +-|+|+|.|-++-+..-+. .-.|..++=+.+|.++ ++.+| T Consensus 274 d~~~Q~~V~~~v~~-Qi~~G~~~I~GvMiES~L~eG~Q~i~~~~~L~YG~SITDaCi~We~Te~lL~~l---a~av~ 346 (350) T 1n8f_A 274 QFKKQMDVCADVCQ-QIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDTDALLRQL---ANAVK 346 (350) T ss_dssp CGGGHHHHHHHHHH-HHHTTCCSEEEEEEEBCSSSBBCCSSSCSCCCTTCBSSSCBBCHHHHHHHHHHH---HHHHH T ss_pred HHHHHHHHHHHHHH-HHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HHHHH T ss_conf 48888999999999-997488628999997136446889999998869872271788968999999999---99998 No 10 >1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A* Probab=99.83 E-value=3.7e-18 Score=138.88 Aligned_cols=244 Identities=20% Similarity=0.297 Sum_probs=178.2 Q ss_pred CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCCCCCCCCC--------------C Q ss_conf 2797699706999548634999999999999999655339--97066015576886663222456--------------7 Q gi|254780669|r 36 QVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLN--IGLVYKSSFDKANRSSLAGKRGV--------------G 99 (301) Q Consensus 36 ~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~--~~~ifK~sfdKanRtS~~sfrG~--------------G 99 (301) +|--|.|.+|++|.|||||...+.+++.|+.|+++..++. .-.+....|.|+ ||+ -+|.|+ | T Consensus 60 ~Il~g~D~RllvIvGPCSIHD~~aa~eYA~rL~~l~~~~~d~l~IVMRvYfEKP-RTt-vGWKGli~DP~ldgs~~I~~G 137 (370) T 1of8_A 60 DIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKP-RTT-VGWKGLINDPDVNNTFNINKG 137 (370) T ss_dssp HHHTTSCCSEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCC-CSS-SSCCCTTTCTTSSSCCCHHHH T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC-CCC-CCCCCCCCCCCCCCCCCHHHH T ss_conf 996599986279962787899899999999999999983487799998641477-545-686643558899999698899 Q ss_pred CHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 12488899988665287688522889999876502157882257628999999985059779983677789999999999 Q gi|254780669|r 100 LKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQ 179 (301) Q Consensus 100 le~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~e 179 (301) +..+.++|.++ .+.|+|+.||..++.....+++.+-+--||||..-..-=-+-++...-||-+|+|..-++.-.++|+. T Consensus 138 l~~aR~ll~~i-~~~GlP~atE~Ldp~~pqY~~DLiSwgAIGARTtESQ~HRelASgls~PVGFKN~TdG~i~vAidAi~ 216 (370) T 1of8_A 138 LQSARQLFVNL-TNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQ 216 (370) T ss_dssp HHHHHHHHHHH-HTTTCCEEEECCSSSTHHHHGGGCSEEEECTTTTTCHHHHHHHHTCSSCEEEECCTTSCSHHHHHHHH T ss_pred HHHHHHHHHHH-HHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHH T ss_conf 99999999998-86499700111556467889987623201356200478999863899872341688765889999999 Q ss_pred H------------------HHHCCCCCEEEEECCCCCCCHHHCCCCCCCHH----HHHHCCCEEECHHHHHHHCCCCCCC Q ss_conf 9------------------97258780899514654440100000001068----8851871687117774212234532 Q gi|254780669|r 180 K------------------LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPI----MTSMGVPVIFDASHSVQQPGIHGNC 237 (301) Q Consensus 180 k------------------i~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~----lk~~~~PVi~D~SHs~q~p~~~~~~ 237 (301) - +...||.+--+.-||-.-|.|. |..++.. |++.+-.|++||||+- +++ T Consensus 217 aa~~~H~Fl~i~~~G~~aiv~T~GN~~~HiILRGG~~gpNY---~~~~i~~a~~~L~~~~~~ImIDcSHgN------S~K 287 (370) T 1of8_A 217 AAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNY---DAKSVAEAKAQLPAGSNGLMIDYSHGN------SNK 287 (370) T ss_dssp HHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCCTTCCCC---SHHHHHHHHHHCCTTCCCEEEESSGGG------GTS T ss_pred HHHCCCEEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCC---CHHHHHHHHHHHHCCCCCEEEECCCCC------CHH T ss_conf 97169766640788756899778987621002756887776---899999999986506982899778886------114 Q ss_pred C-CCCHHHHHHHHH--HHHHHCCCEEEEEECCCHHHCCC--C-----------CCCCCCHHHHHHHHHHH Q ss_conf 1-263889999999--99971898899983698334797--8-----------20186889999999999 Q gi|254780669|r 238 S-GGERQYIVPLAK--AAVAIGIAGIFLETHQDPDNAPS--D-----------GPNMINIKDLPKLLSQL 291 (301) Q Consensus 238 ~-gG~r~~v~~la~--aa~a~G~dGlfiE~Hp~P~~Als--D-----------~~q~l~l~~l~~ll~~l 291 (301) - --+...+..++. ++-.-.+-|+|+|.|-.+-+..- + -+-.|..++=+.+|.++ T Consensus 288 d~~~Q~~V~~~V~~Qi~~G~~~I~GvMiES~L~eG~Q~i~~~~~~~L~YG~SITDaCi~We~Te~lL~~l 357 (370) T 1of8_A 288 DFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKL 357 (370) T ss_dssp CGGGHHHHHHHHHHHHHTTCCSEEEEEEEBCSSSBBCCC-------CCTTCBSSSCBBCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 4888899999999998757872899999625655688999887777868762061788958999999999 No 11 >1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 Probab=99.53 E-value=8.8e-11 Score=90.37 Aligned_cols=252 Identities=15% Similarity=0.193 Sum_probs=181.6 Q ss_pred ECCCEEEECCCCCCEEECCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEC---------CCCCCC-- Q ss_conf 317706835787727976997069995--48634999999999999999655339-9706601---------557688-- Q gi|254780669|r 23 HTNAAIHLGSGKNQVTFSNEQRFVLIA--GPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKS---------SFDKAN-- 88 (301) Q Consensus 23 ~~~~~~~ig~~~~~i~ig~~~~l~iIA--GPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~---------sfdKan-- 88 (301) +....++| ++..||.+.|.+||| |-+=-=+.+.+.++.+..++.|++.. .. .|++ .+++.+ T Consensus 11 ~~m~~~~i----~~~~ig~~~~~~IIAEIG~NH~Gd~~~ak~lI~~A~~sGaDaVKFQ-~~~~d~l~~~~~~~~~~~~~~ 85 (385) T 1vli_A 11 HHMAAFQI----ANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQ-MFQADRMYQKDPGLYKTAAGK 85 (385) T ss_dssp ---CEEEE----TTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEC-CBCGGGGTSCCC--------- T ss_pred CCCCEEEE----CCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCHHHEECCCHHHCCCCCCC T ss_conf 23441898----9999489998389998157768809999999999998195999950-506776078764434567888 Q ss_pred -CCCCCCCC--CCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEE Q ss_conf -66632224--56712488899988665287688522889999876502-157882257628999999985059779983 Q gi|254780669|r 89 -RSSLAGKR--GVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVK 164 (301) Q Consensus 89 -RtS~~sfr--G~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iK 164 (301) .+-..-|+ .+.. +-...|.+..++.|+...+.+-+..-++.+.+. +|.+-|+++.+.|.+||++++++++||.+- T Consensus 86 ~~~~~~~~kk~els~-~~~~~l~~~~k~~~i~~~~s~fd~~s~~~l~~l~~~~~KIaS~di~n~~Ll~~i~~~~kpiiiS 164 (385) T 1vli_A 86 DVSIFSLVQSMEMPA-EWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFS 164 (385) T ss_dssp CCCHHHHGGGBSSCG-GGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEE T ss_pred CCCHHHHHHHHHHHH-HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 863999998365528-9999999999984987998537278887887609631675265546579999999709977993 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH-HC-CCEEECHHHHHHHCCCCCCCCCCCH Q ss_conf 677789999999999997258780899514654440100000001068885-18-7168711777421223453212638 Q gi|254780669|r 165 KGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS-MG-VPVIFDASHSVQQPGIHGNCSGGER 242 (301) Q Consensus 165 kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~-~~-~PVi~D~SHs~q~p~~~~~~~gG~r 242 (301) -|. .+.+|...+++.+...++.+++|.+==+++....--..++.+..+|+ +. .|| -=..|+. +|. T Consensus 165 tG~-~~~~eI~~~~~~i~~~~~~~i~llhC~s~YPt~~~~~nL~~i~~lk~~~~~~~i-G~SdHs~----------~~~- 231 (385) T 1vli_A 165 TAG-AEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVI-GFSDHSE----------HPT- 231 (385) T ss_dssp CTT-CCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEE-EEEECCS----------SSS- T ss_pred CCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE-EECCCCC----------CCH- T ss_conf 265-443468999999986478767998547889996576418899999983266745-8788886----------741- Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHC--CCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999718988999836983347--9782018688999999999999999885 Q gi|254780669|r 243 QYIVPLAKAAVAIGIAGIFLETHQDPDNA--PSDGPNMINIKDLPKLLSQLLAIDKIIK 299 (301) Q Consensus 243 ~~v~~la~aa~a~G~dGlfiE~Hp~P~~A--lsD~~q~l~l~~l~~ll~~l~~i~~~vk 299 (301) ..+.+|+++||. +||-|-..+.. -.|...+++|++|..+++.++.+..+.. T Consensus 232 ----~~~~~Ai~~GA~--iIEKH~Tl~k~~~g~D~~~Sl~p~e~~~~v~~ir~~~~~lG 284 (385) T 1vli_A 232 ----EAPCAAVRLGAK--LIEKHFTIDKNLPGADHSFALNPDELKEMVDGIRKTEAELK 284 (385) T ss_dssp ----HHHHHHHHTTCS--EEEEEBCSCTTSSCSSCTTSBCHHHHHHHHHHHHHHHHHHH T ss_pred ----HHHHHHHHCCCC--EEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf ----667998737982--68999970366534555426695899999999999999838 No 12 >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A Probab=99.46 E-value=3.9e-10 Score=86.11 Aligned_cols=246 Identities=13% Similarity=0.131 Sum_probs=169.5 Q ss_pred CCCEEEECCCCCCEEECCCCCEEEEE--CCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEC------CCCCCCC-CCCC Q ss_conf 17706835787727976997069995--48634999999999999999655339-9706601------5576886-6632 Q gi|254780669|r 24 TNAAIHLGSGKNQVTFSNEQRFVLIA--GPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKS------SFDKANR-SSLA 93 (301) Q Consensus 24 ~~~~~~ig~~~~~i~ig~~~~l~iIA--GPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~------sfdKanR-tS~~ 93 (301) .+..+.| |+..||.+.|.+||| |-+---+.+.+.++.+..++.|++.. .. .|++ ....... .... T Consensus 3 ~~~~~ki----~~~~ig~~~~~~iIAEIg~NH~Gdl~~a~~LI~~A~~sGadaVKFQ-~~~~~~~~~~~~~~~~~~~~~~ 77 (349) T 2wqp_A 3 NNNEFKI----GNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQ-THIVEDEMSDEAKQVIPGNADV 77 (349) T ss_dssp CCCEEEE----TTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEE-ECCHHHHCCGGGGGCCCTTCSS T ss_pred CCCCEEE----CCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCHHHHHCHHHHHHCCCCCCC T ss_conf 8870778----9989689998289997067757769999999999998399999901-7373776186667520478886 Q ss_pred CC----CC--CCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECC Q ss_conf 22----45--6712488899988665287688522889999876502-15788225762899999998505977998367 Q gi|254780669|r 94 GK----RG--VGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 94 sf----rG--~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkg 166 (301) ++ .- +..+ -...|.+..++.|+...+.+-+..-++.+.+. +|.+-|++..+.|.+||++++++++||.+=-| T Consensus 78 ~~~~~~~~~el~~~-~~~~l~~~~k~~gi~f~~t~fd~~sv~~l~~~~~~~~KIaS~~~~n~~Li~~i~~~~kpiiiStG 156 (349) T 2wqp_A 78 SIYEIMERCALNEE-DEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNYPLIKLVASFGKPIILSTG 156 (349) T ss_dssp CHHHHHHHHCCCHH-HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHTTCSCEEEECT T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCEECCCHHHCCHHHHHHHHHCCCCEEEECC T ss_conf 03343554433268-99999999862575288503642367887751555212152121408999999973997567435 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHC--CCCCCCHHHHHHC--CCEEECHHHHHHHCCCCCCCCCCCH Q ss_conf 77899999999999972587808995146544401000--0000106888518--7168711777421223453212638 Q gi|254780669|r 167 QFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLV--TDMRSIPIMTSMG--VPVIFDASHSVQQPGIHGNCSGGER 242 (301) Q Consensus 167 q~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lv--vD~~~i~~lk~~~--~PVi~D~SHs~q~p~~~~~~~gG~r 242 (301) . .+.+|...+++.+...++ +++|.+==+. |.+-. ..++.+..||+.. +||=+. .|+. |. T Consensus 157 ~-~~~~eI~~~v~~~~~~~~-~~~llhC~s~--YPt~~~~~nL~~I~~lk~~~~~~~iG~S-DHt~-----------g~- 219 (349) T 2wqp_A 157 M-NSIESIKKSVEIIREAGV-PYALLHCTNI--YPTPYEDVRLGGMNDLSEAFPDAIIGLS-DHTL-----------DN- 219 (349) T ss_dssp T-CCHHHHHHHHHHHHHHTC-CEEEEECCCC--SSCCGGGCCTHHHHHHHHHCTTSEEEEE-CCSS-----------SS- T ss_pred C-CHHHHHHHHHHHHHHHCC-CCEEEEEECC--CCCHHHHCCHHHHHHHHHHCCCCCEEEC-CCCC-----------CC- T ss_conf 4-305556678988876324-6313253489--9951554168988999986788755606-8887-----------62- Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCC--HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999971898899983698--3347978201868899999999999999988 Q gi|254780669|r 243 QYIVPLAKAAVAIGIAGIFLETHQD--PDNAPSDGPNMINIKDLPKLLSQLLAIDKII 298 (301) Q Consensus 243 ~~v~~la~aa~a~G~dGlfiE~Hp~--P~~AlsD~~q~l~l~~l~~ll~~l~~i~~~v 298 (301) ..+.+|++.||. +||-|-. ...--.|...+++|++|+.++..++.+..+. T Consensus 220 ----~~~~~Ava~GA~--iIEKH~Tl~~~~~g~D~~~Sl~p~e~~~~v~~ir~~~~~l 271 (349) T 2wqp_A 220 ----YACLGAVALGGS--ILERHFTDRMDRPGPDIVCSMNPDTFKELKQGAHALKLAR 271 (349) T ss_dssp ----HHHHHHHHHTCC--EEEEEBCSCTTCCSTTGGGCBCHHHHHHHHHHHHHHHHHS T ss_pred ----HHHHHHHHCCCC--EEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf ----778999976987--5789999537668987511289799999999999999871 No 13 >3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} Probab=99.25 E-value=8.7e-09 Score=77.25 Aligned_cols=231 Identities=14% Similarity=0.185 Sum_probs=153.7 Q ss_pred EEEE--CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-----------CCCCCCCCC-CCCCCC--CCCHHHHHHHHH Q ss_conf 9995--486349999999999999996553399706601-----------557688666-322245--671248889998 Q gi|254780669|r 46 VLIA--GPCQIESHDHAFMIAEKLYAICQSLNIGLVYKS-----------SFDKANRSS-LAGKRG--VGLKKGREIFRD 109 (301) Q Consensus 46 ~iIA--GPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~-----------sfdKanRtS-~~sfrG--~Gle~gL~il~e 109 (301) +||| |.+---+.+.+.++.+..++.|+......+.|= ++......+ ..-|+- +-. +-+..|.+ T Consensus 7 ~iIAEIg~NH~Gd~~~ak~lI~~a~~~ga~~d~~~avKfQ~~~~d~~~~~~~~~~~~~~~~~~~~~~~ls~-~~~~~l~~ 85 (350) T 3g8r_A 7 LFIFEMANNHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQP-EQMQKLVA 85 (350) T ss_dssp EEEEECTTTTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCH-HHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCHHCCCCCCHHHHHHHHHHHCCH-HHHHHHHH T ss_conf 99999256653759999999999998679976557368871158993460103777425999999753999-99999999 Q ss_pred HHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 8665287688522889999876502-157882257628999999985059779983677789999999999997258780 Q gi|254780669|r 110 LKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKD 188 (301) Q Consensus 110 ~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~ 188 (301) -.++.|+...+.+.+..-++.+.+. +|.+-|++..+.|.+||++++++++||.+--| +++.+|...+++.+...+++- T Consensus 86 ~~k~~gi~f~~s~fd~~s~~~l~~~~~~~~KIaS~d~~n~~Li~~i~~~~kpiiiStG-~~~~~eI~~a~~~~~~~~~~~ 164 (350) T 3g8r_A 86 EMKANGFKAICTPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTA-GARREDIDKVVSFMLHRGKDL 164 (350) T ss_dssp HHHHTTCEEEEEECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECT-TCCHHHHHHHHHHHHTTTCCE T ss_pred HHHHHCCCEEECCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEECC-CCCHHHHHHHHHHHHCCCCEE T ss_conf 9862174425262547776565404863797244153104799998500587612347-778888666666553258769 Q ss_pred EEEEECCCCCCCHHHC--CCCCCCHHHHH-H-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 8995146544401000--00001068885-1-871687117774212234532126388999999999971898899983 Q gi|254780669|r 189 VLFCERGTSFGYNTLV--TDMRSIPIMTS-M-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 189 i~lcERG~~fgy~~lv--vD~~~i~~lk~-~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) ++-+ +++ .|.+.. +.++.+..||+ + ++||=+ -.|+. |.- ...+.+|+++||. +||- T Consensus 165 -~llh-c~s-~YPt~~ed~nL~~I~~Lk~~~~~~~vGy-SDHt~-----------g~~---~~~~~~Av~~GA~--iIEK 224 (350) T 3g8r_A 165 -TIMH-CVA-EYPTPDDHLHLARIKTLRQQYAGVRIGY-STHED-----------PDL---MEPIMLAVAQGAT--VFEK 224 (350) T ss_dssp -EEEE-CCC-CSSCCGGGCCTTHHHHHHHHCTTSEEEE-EECCC-----------SSC---CHHHHHHHHTTCC--EEEE T ss_pred -EEEE-CCC-CCCCCHHHCCCHHHHHHHHHCCCCEEEE-CCCCC-----------CCC---CCCHHHHHHCCCC--CEEE T ss_conf -9961-477-7899837747123544787536785787-88877-----------754---2126878858974--1206 Q ss_pred CCCHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 6983347-978201868899999999999999988 Q gi|254780669|r 265 HQDPDNA-PSDGPNMINIKDLPKLLSQLLAIDKII 298 (301) Q Consensus 265 Hp~P~~A-lsD~~q~l~l~~l~~ll~~l~~i~~~v 298 (301) |-..++. ..|...++.+++|.+++..++.+..+. T Consensus 225 HfTldk~~~g~d~~S~~~~e~~~~v~~i~~~~~~l 259 (350) T 3g8r_A 225 HVGLPTDQYGINNYSANPEQVRRWLAAAARALAML 259 (350) T ss_dssp EBCCCBTTBCCCTTCBCHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 78447667897232027278999999999999995 No 14 >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, manic, transferase; HET: 680; 1.83A {Bacillus anthracis str} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* Probab=95.64 E-value=0.14 Score=29.91 Aligned_cols=203 Identities=14% Similarity=0.181 Sum_probs=128.2 Q ss_pred CHHHHHHHHHHHHHHHHHCC-CCEE-EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH Q ss_conf 99999999999999655339-9706-601557688666322245671248889998866528768852288999987650 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLN-IGLV-YKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIAD 133 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~-~~~i-fK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~ 133 (301) +.|.+++-|+.+.+-|++.. +|+. -+| .|.+- |... -++.-+.+++.+++..++++--|-..++-++.+.+ T Consensus 61 ~~~~a~~~a~~mi~~GAdIIDIGaeSTrP---ga~~i---s~ee-E~~Rl~pvi~~l~~~~~i~iSIDT~~~~Va~~al~ 133 (297) T 1tx2_A 61 EVDAAVRHAKEMRDEGAHIIDIGGESTRP---GFAKV---SVEE-EIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIE 133 (297) T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCC-------CCCC---CHHH-HHHHHHHHHHHHHHHSCSCEEEECSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEECCEECCC---CCEEC---CHHH-HHHHHCHHHHHHHHCCCEEEEEECCCHHHHHHHHH T ss_conf 99999999999998799599989756799---98206---8588-87762567898852676489884885999999997 Q ss_pred -HCCEE-EECHHHCCCHHHHHHHHHCCCEEEEECCC----CCCH-----HHHHHHHHHHHHCCCC-CEEEEECCCCCCCH Q ss_conf -21578-82257628999999985059779983677----7899-----9999999999725878-08995146544401 Q gi|254780669|r 134 -SVDIL-QIPALLCRQTDLLTAAAQTGRVINVKKGQ----FLSP-----WEMHNILQKLHAHGAK-DVLFCERGTSFGYN 201 (301) Q Consensus 134 -~vDil-QIgA~~~rqtdLl~a~a~t~kpV~iKkgq----~~s~-----~e~~~a~eki~~~Gn~-~i~lcERG~~fgy~ 201 (301) .+||+ -|-+++ ..-.++..+++.+.++.+-.-+ .... .++..-++...+.|.+ +-|+..=|+-||-+ T Consensus 134 ~Ga~iINDVsg~~-~d~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~v~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~ 212 (297) T 1tx2_A 134 AGAHIINDIWGAK-AEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKT 212 (297) T ss_dssp HTCCEEEETTTTS-SCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCC T ss_pred CCCEEEECCCCCC-CCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCC T ss_conf 5962997474333-572789998633788233257777764433105689999999999986988899877665677745 Q ss_pred ---HHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH Q ss_conf ---00000001068885187168711777421223453212638899999999997189889998369833 Q gi|254780669|r 202 ---TLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 202 ---~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) |+ .=++++..++++++||.+=+|.--....-.+..+..+..--..++-.|+..|++ ++-||.-++ T Consensus 213 ~~~n~-~ll~~l~~~~~lg~PiLvGvSRKsfi~~~~~~~~~~Rl~~Tla~~~~a~~~Ga~--IiRvHDV~e 280 (297) T 1tx2_A 213 PEQNL-EAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCE--FVRVHDVKE 280 (297) T ss_dssp HHHHH-HHHHTGGGGGGGCSCBEEECTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCS--EEEESCHHH T ss_pred CCCCH-HHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC--EEEECCHHH T ss_conf 10247-898777654105776375124888898874899788437999999999987998--999698899 No 15 >1tlt_A Putative oxidoreductase (virulence factor MVIM homolog); structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Probab=95.61 E-value=0.055 Score=32.54 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=60.9 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 99886652876885228899998765021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) .++..++||+++.++. + .+.+-+|++-|...+....+++.++.+.||+|++-||...+.+|.....+.....|. T Consensus 44 ~~~~~~~~~~~~~~~~---~---~l~~~~D~V~I~tp~~~H~~~~~~al~~gkhv~~EKP~~~~~~e~~~l~~~~~~~~~ 117 (319) T 1tlt_A 44 ALPICESWRIPYADSL---S---SLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL 117 (319) T ss_dssp HHHHHHHHTCCBCSSH---H---HHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHCCCCCCCH---H---HHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCC T ss_conf 9999998299822889---9---985699999994886666899999986198799963650246677777777650363 Q ss_pred C Q ss_conf 8 Q gi|254780669|r 187 K 187 (301) Q Consensus 187 ~ 187 (301) . T Consensus 118 ~ 118 (319) T 1tlt_A 118 T 118 (319) T ss_dssp C T ss_pred E T ss_conf 1 No 16 >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Probab=95.60 E-value=0.028 Score=34.42 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=63.3 Q ss_pred HHHHHHHHHCCE---EEEECCCHHHHHHH-HHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 999886652876---88522889999876-50215788225762899999998505977998367778999999999999 Q gi|254780669|r 106 IFRDLKKKYGFP---ILTDVHTEQQCEAI-ADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKL 181 (301) Q Consensus 106 il~e~k~~~glp---v~TeV~~~~~~e~~-~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki 181 (301) -.+++.++||+| +-++..+.-.-|.+ ..-+|++-|-+-+--..+++.++.+.||+|++-|+...+.+|....++.. T Consensus 53 ~a~~~a~~~gi~~~~~y~d~~~~l~~e~~~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 132 (398) T 3dty_A 53 RGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELS 132 (398) T ss_dssp HHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHH T ss_conf 99999998688954004999999998751799817999899869989999999986993898578401678899999988 Q ss_pred HHCCCC Q ss_conf 725878 Q gi|254780669|r 182 HAHGAK 187 (301) Q Consensus 182 ~~~Gn~ 187 (301) .+.|.. T Consensus 133 ~~~~~~ 138 (398) T 3dty_A 133 HKHNRI 138 (398) T ss_dssp HHTTCC T ss_pred HHCCCE T ss_conf 633966 No 17 >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Probab=95.54 E-value=0.068 Score=31.91 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=65.7 Q ss_pred ECHHHCCCHHHHHHHH-----HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHH Q ss_conf 2257628999999985-----05977998367778999999999999725878089951465444010000000106888 Q gi|254780669|r 140 IPALLCRQTDLLTAAA-----QTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMT 214 (301) Q Consensus 140 IgA~~~rqtdLl~a~a-----~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk 214 (301) -||.++++.+++.++- .++.||-+|=-..-+.+++...+..+.+.|...+.+--|=-.-+|.. ..|...++.+| T Consensus 103 ~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~ltiH~Rt~~q~y~g-~~~w~~I~~~k 181 (318) T 1vhn_A 103 AGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTG-RAEWKALSVLE 181 (318) T ss_dssp CGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSS-CCCGGGGGGSC T ss_pred CCCCHHHCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEEEHHCCCCC-CCHHHHHHHHH T ss_conf 73135325378999975321115884211141276621467999999982864677630002206775-10167899987 Q ss_pred HHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE--ECCCH Q ss_conf 5187168711777421223453212638899999999997189889998--36983 Q gi|254780669|r 215 SMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE--THQDP 268 (301) Q Consensus 215 ~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE--~Hp~P 268 (301) + .+|||. +|+.. ...++..-+ -..|+||+|+= .--|| T Consensus 182 ~-~iPvi~-----------NGdI~-s~~da~~~l----~~tg~dGVMIGRgal~nP 220 (318) T 1vhn_A 182 K-RIPTFV-----------SGDIF-TPEDAKRAL----EESGCDGLLVARGAIGRP 220 (318) T ss_dssp C-SSCEEE-----------ESSCC-SHHHHHHHH----HHHCCSEEEESGGGTTCT T ss_pred C-CCCCCC-----------CCCCC-CHHHHHHHH----HHHCCCEEEECHHHHHCC T ss_conf 1-586101-----------58869-999999998----723899799717657197 No 18 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Probab=95.24 E-value=0.087 Score=31.23 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=62.9 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.++.+++||++..|+. . +.++ +.+|++-|...+....+++.++.+.||+|++-||...+++|..-..+..... T Consensus 41 ~~~~~~~~~~~~~~~~~---~--ell~~~~iD~V~I~tp~~~h~~~~~~al~~gk~Vl~EKP~a~~~~e~~~l~~~~~~~ 115 (344) T 3euw_A 41 GAQRLAEANGAEAVASP---D--EVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDG 115 (344) T ss_dssp HHHHHHHTTTCEEESSH---H--HHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGG T ss_pred HHHHHHHHHCCCEECCH---H--HHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHC T ss_conf 99999998499778999---9--996489988899715431103567998851375110232200134566666655413 Q ss_pred CC Q ss_conf 87 Q gi|254780669|r 185 GA 186 (301) Q Consensus 185 Gn 186 (301) |- T Consensus 116 ~~ 117 (344) T 3euw_A 116 AS 117 (344) T ss_dssp GG T ss_pred CC T ss_conf 33 No 19 >3kgf_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathwa aromatic biosynthesis; HET: PHE TRP; 2.00A {Mycobacterium tuberculosis} PDB: 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 2w19_A 2w1a_A* Probab=95.22 E-value=0.19 Score=28.99 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=86.4 Q ss_pred CCEEEECHHHCCC-HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCHHHCCC--CCCC Q ss_conf 1578822576289-9999998505977998367778999999999999725878-0899514654440100000--0010 Q gi|254780669|r 135 VDILQIPALLCRQ-TDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAK-DVLFCERGTSFGYNTLVTD--MRSI 210 (301) Q Consensus 135 vDilQIgA~~~rq-tdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~-~i~lcERG~~fgy~~lvvD--~~~i 210 (301) .-++|||-|.-|- -.=++=+....-||-||=|..++++|.+..++++.-.... .+.|+-| ||..+. -+ ..-| T Consensus 278 aH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~p~el~~L~~~LnP~nepGRltLI~R---mGa~ki-~~~LP~Li 353 (464) T 3kgf_A 278 AHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSR---MGNHKV-RDLLPPIV 353 (464) T ss_dssp CSEEEECTTSCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEEC---CCTTTH-HHHHHHHH T ss_pred CCCCEECCCCCCCCCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEE---CCCHHH-HHHHHHHH T ss_conf 54000034445788516799874568611324899999999999998498887871899860---370789-98879999 Q ss_pred HHHHHHCCCEE--ECHHHHHHHCCCCCCCCCCCHHHHHH---H--HHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHH Q ss_conf 68885187168--71177742122345321263889999---9--9999971898899983698334797820186889 Q gi|254780669|r 211 PIMTSMGVPVI--FDASHSVQQPGIHGNCSGGERQYIVP---L--AKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIK 282 (301) Q Consensus 211 ~~lk~~~~PVi--~D~SHs~q~p~~~~~~~gG~r~~v~~---l--a~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~ 282 (301) ...++.+.||+ |||-|.--.-.+.|-+|---.+.+.. . ...+...-.-|+-+|.-.+.-.--.+|.+.++-+ T Consensus 354 ~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~f~~I~~Ev~~ff~ih~~~gt~~GGvHlE~Tg~~VTEC~GG~~~~~e~ 432 (464) T 3kgf_A 354 EKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISET 432 (464) T ss_dssp HHHHTTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCCCCSBBTTTTBCTT T ss_pred HHHHHCCCCEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHH T ss_conf 9998779955996358777732689985066789999999999999998397667587882389831307996657822 No 20 >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Probab=95.00 E-value=0.07 Score=31.83 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=62.2 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.+++.++||+++.+++ ++ .+. .-+|++-|-.-+-...+++.++.+.||.|++-|+...+++|....++..... T Consensus 40 ~~~~~~~~~~~~~~~~~---~e--ll~~~~vD~V~i~tp~~~H~~~~~~al~~gkhV~~EKPla~~~~ea~~l~~~a~~~ 114 (387) T 3moi_A 40 VRERFGKEYGIPVFATL---AE--MMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387) T ss_dssp HHHHHHHHHTCCEESSH---HH--HHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEECCH---HH--HHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999998599858999---99--96599998899908967899999999861895653788879999999999999980 Q ss_pred CC Q ss_conf 87 Q gi|254780669|r 185 GA 186 (301) Q Consensus 185 Gn 186 (301) |. T Consensus 115 g~ 116 (387) T 3moi_A 115 GV 116 (387) T ss_dssp TC T ss_pred CC T ss_conf 99 No 21 >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Probab=94.98 E-value=0.22 Score=28.55 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=94.0 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE---------ECCC- Q ss_conf 999999999999999655339970660155768866632224567124888999886652876885---------2288- Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT---------DVHT- 124 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T---------eV~~- 124 (301) -+.+.+-.+|+.....|.. ++.- .+++.++++|+.+++|++- .+.. T Consensus 33 ~~~e~v~a~A~a~~~gGa~----~i~~--------------------~~~~~l~~ir~~~~~pv~~l~k~~~~~~~~~~~ 88 (232) T 3igs_A 33 DKPEIVAAMALAAEQAGAV----AVRI--------------------EGIDNLRMTRSLVSVPIIGIIKRDLDESPVRIT 88 (232) T ss_dssp CSHHHHHHHHHHHHHTTCS----EEEE--------------------ESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBS T ss_pred CCCHHHHHHHHHHHHCCCE----EEEC--------------------CCHHHHHHHHHHCCCCEEEEEECCCCCCCEECC T ss_conf 7808999999999978987----9955--------------------999999999985576177566204678844425 Q ss_pred --HHHHHHHHH-HCCEEEECHHHCCC----HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf --999987650-21578822576289----99999985059779983677789999999999997258780899514654 Q gi|254780669|r 125 --EQQCEAIAD-SVDILQIPALLCRQ----TDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTS 197 (301) Q Consensus 125 --~~~~e~~~~-~vDilQIgA~~~rq----tdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~ 197 (301) .++++.+.+ .+|++.+.+-.-.+ .++...+...+..++..-. +++++..+ .+.|.+=|...-||.+ T Consensus 89 ~~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~v~---t~~~a~~a----~~~Gad~Igv~~~~~~ 161 (232) T 3igs_A 89 PFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS---SVDDGLAC----QRLGADIIGTTMSGYT 161 (232) T ss_dssp CSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC---SHHHHHHH----HHTTCSEEECTTTTSS T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECC---CHHHHHHH----HHCCCCEEEEECCCCC T ss_conf 5899998888739999999723489978999999999754986999869---99999999----9689988997357787 Q ss_pred CCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 4401000000010688851871687117774212234532126388999999999971898899983 Q gi|254780669|r 198 FGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 198 fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) ..-.+...++.-+...+..+.|||.+- |-+. +.-+..++.+|+||+++=+ T Consensus 162 ~~~~~~~~~~~l~~~~~~~~ipvia~G---------------GI~t--~~d~~~~~~~GAd~V~vGs 211 (232) T 3igs_A 162 TPDTPEEPDLPLVKALHDAGCRVIAEG---------------RYNS--PALAAEAIRYGAWAVTVGS 211 (232) T ss_dssp SSSCCSSCCHHHHHHHHHTTCCEEEES---------------CCCS--HHHHHHHHHTTCSEEEECH T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC---------------CCCC--HHHHHHHHHCCCCEEEECH T ss_conf 787670367889999733782399858---------------9899--9999999986999999894 No 22 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Probab=94.76 E-value=0.18 Score=29.09 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=63.4 Q ss_pred HHHHHHHHHCCEE--EEECCCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 9998866528768--852288999987650-2157882257628999999985059779983677789999999999997 Q gi|254780669|r 106 IFRDLKKKYGFPI--LTDVHTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLH 182 (301) Q Consensus 106 il~e~k~~~glpv--~TeV~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~ 182 (301) -.+++.++||+++ .++ .+ +.+++ -+|++-|..-+-...+++.++.+.|++|++-||...+++|....++... T Consensus 61 ~a~~~a~~~~~~~~~y~~---~~--ell~~~~iDaV~I~Tp~~~H~~~~~~al~~GkhVl~EKPla~~~~e~~~l~~~~~ 135 (357) T 3ec7_A 61 RAQAALDKYAIEAKDYND---YH--DLINDKDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQ 135 (357) T ss_dssp HHHHHHHHHTCCCEEESS---HH--HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCC---HH--HHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC T ss_conf 999999983999831199---99--9965999888998898500004578898517769975881355899999876530 Q ss_pred HCCCCCEEE Q ss_conf 258780899 Q gi|254780669|r 183 AHGAKDVLF 191 (301) Q Consensus 183 ~~Gn~~i~l 191 (301) ..|..-+++ T Consensus 136 ~~~~~~~~v 144 (357) T 3ec7_A 136 KNGKRMVQI 144 (357) T ss_dssp HHTSCCEEE T ss_pred CCCCCCCCC T ss_conf 256643233 No 23 >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Probab=94.44 E-value=0.18 Score=29.06 Aligned_cols=85 Identities=7% Similarity=0.108 Sum_probs=64.5 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCC------CEEEEECCCCCCHHHHHHHH Q ss_conf 999886652876885228899998765-02157882257628999999985059------77998367778999999999 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTG------RVINVKKGQFLSPWEMHNIL 178 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~------kpV~iKkgq~~s~~e~~~a~ 178 (301) -.+++.++||+|..+-..+.+++ ++ +-+|++-|..-+-...++..++-+.| |+|++-|+...+.+|....+ T Consensus 81 ~a~~~a~~~g~~~~~~y~d~~el--l~~~~vD~V~I~tp~~~H~~~~~~Al~aG~~~~~~KhV~~EKPla~~~~ea~~l~ 158 (479) T 2nvw_A 81 SSLQTIEQLQLKHATGFDSLESF--AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY 158 (479) T ss_dssp HHHHHHHHTTCTTCEEESCHHHH--HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCHHHH--HCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH T ss_conf 99999998588977446999999--5599998899949827899999999982954356873899267531056679999 Q ss_pred HHHHHCCCCCEEEE Q ss_conf 99972587808995 Q gi|254780669|r 179 QKLHAHGAKDVLFC 192 (301) Q Consensus 179 eki~~~Gn~~i~lc 192 (301) +.....++-.++++ T Consensus 159 ~~a~~~~~v~~~v~ 172 (479) T 2nvw_A 159 SISQQRANLQTIIC 172 (479) T ss_dssp HHHHTCTTCEEEEE T ss_pred HHHHHCCCCEEEEE T ss_conf 99763254203300 No 24 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Probab=94.43 E-value=0.26 Score=28.05 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=63.8 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.++++++|+++.+.+ +.++ .+. +-+|++-|-+-.-...+++.++.+.|++|++-|+...+.+|....++..... T Consensus 46 ~~~~~~~~~~~~~~~~--~~~~--ll~~~~vD~v~I~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~e~~~l~~~a~~~ 121 (346) T 3cea_A 46 QLEWAKNELGVETTYT--NYKD--MIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346) T ss_dssp HHHHHHHTTCCSEEES--CHHH--HHTTSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC T ss_pred HHHHHHHHCCCCCCCC--CHHH--HHCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHC T ss_conf 9999999829985159--9999--96489988899957176589999999864985988557422212211567888752 Q ss_pred CCCCE Q ss_conf 87808 Q gi|254780669|r 185 GAKDV 189 (301) Q Consensus 185 Gn~~i 189 (301) |..-. T Consensus 122 ~~~~~ 126 (346) T 3cea_A 122 PNQIF 126 (346) T ss_dssp TTSCE T ss_pred CCEEE T ss_conf 87665 No 25 >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Probab=94.38 E-value=0.31 Score=27.61 Aligned_cols=168 Identities=15% Similarity=0.293 Sum_probs=98.1 Q ss_pred EEEECCC-CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEE--EEC Q ss_conf 9995486-3499999999999999965533997066015576886663222456712488899988665287688--522 Q gi|254780669|r 46 VLIAGPC-QIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPIL--TDV 122 (301) Q Consensus 46 ~iIAGPC-siES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~--TeV 122 (301) .||+.|= ++=+.++ |..+.+.| ..+.+- |. ...|+-.+...++++..++++. .-+ T Consensus 47 PIIsA~MDtV~~~~m----A~als~~G---glgvih--------r~-------~~~ee~~~~i~k~~~~~~~~v~~~~~~ 104 (361) T 3khj_A 47 PLISSAMDTVTEHLM----AVGMARLG---GIGIIH--------KN-------MDMESQVNEVLKVKNSGGLRVGAAIGV 104 (361) T ss_dssp SEEECSSTTTCSHHH----HHHHHHTT---CEEEEC--------SS-------SCHHHHHHHHHHHHHTTCCCCEEEECT T ss_pred CEEECCCCCCCCHHH----HHHHHHCC---CEEEEE--------CC-------CCHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 889789887588899----99999889---977972--------26-------998999999997640267445302583 Q ss_pred CCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHH----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC- Q ss_conf 88999987650-21578822576289999999850----5977998367778999999999999725878089951465- Q gi|254780669|r 123 HTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQ----TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGT- 196 (301) Q Consensus 123 ~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~----t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~- 196 (301) ++.+.++.+.+ .+|++.|-.-+-....+++.+.+ .+.+|.+ |.-.+++ .++++...|.+- +...-|- T Consensus 105 ~~~~~~~~lv~agvd~ivID~ahg~~~~~~~~ik~~r~~~~~~vi~--GNVaT~e----~a~~L~~aGAD~-VkVGiG~G 177 (361) T 3khj_A 105 NEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV--GNVVTEE----ATKELIENGADG-IKVGIGPG 177 (361) T ss_dssp TCHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEE--EEECSHH----HHHHHHHTTCSE-EEECSSCC T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE--CCCCCHH----HHHHHHHCCCCE-EEECCCCC T ss_conf 0899999999779999999289885148999999986027988686--5538889----999999719988-99734068 Q ss_pred ---------CCCCHHHCCCCCCCH----HHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf ---------444010000000106----8885187168711777421223453212638899999999997189889998 Q gi|254780669|r 197 ---------SFGYNTLVTDMRSIP----IMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 197 ---------~fgy~~lvvD~~~i~----~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) -+||.. +.++. ..++++.|||-|--... -++.+ +|+++|+|++|+= T Consensus 178 s~CtTr~~tGvg~pq----~sai~~~~~~~~~~~vpIIADGGi~~------------~gdi~-----KAla~GAd~VMlG 236 (361) T 3khj_A 178 SICTTRIVAGVGVPQ----ITAIEKCSSVASKFGIPIIADGGIRY------------SGDIG-----KALAVGASSVMIG 236 (361) T ss_dssp TTCCHHHHTCBCCCH----HHHHHHHHHHHHHHTCCEEEESCCCS------------HHHHH-----HHHHHTCSEEEES T ss_pred CCCCCCCCCCCCCCH----HHHHHHHHHHHCCCCCCEEECCCCCC------------CCHHH-----HHHHCCCCHHHHC T ss_conf 555520031557836----88999999986047887795588364------------67199-----9987388400005 No 26 >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Probab=94.13 E-value=0.15 Score=29.61 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=61.9 Q ss_pred HHHHHHHHHHCCEEEEECC-CHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 8999886652876885228-899998765-02157882257628999999985059779983677789999999999997 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVH-TEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLH 182 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~-~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~ 182 (301) +-.+++.++|++|-.+.+. +.+ |.++ +-+|++-|-.-+-..++++.++.+.||+|++-|+...+++|..-.++-.. T Consensus 42 ~~~~~~a~~~~~~~~~~~~~d~~--ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 119 (362) T 1ydw_A 42 EKAKAFATANNYPESTKIHGSYE--SLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACE 119 (362) T ss_dssp HHHHHHHHHTTCCTTCEEESSHH--HHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEECCCHH--HHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH T ss_conf 99999999849985556538999--9964999888999588268899999999769859994781000467899999986 Q ss_pred HCCC Q ss_conf 2587 Q gi|254780669|r 183 AHGA 186 (301) Q Consensus 183 ~~Gn 186 (301) +.|. T Consensus 120 ~~~~ 123 (362) T 1ydw_A 120 ANGV 123 (362) T ss_dssp TTTC T ss_pred HHCC T ss_conf 3022 No 27 >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Probab=94.08 E-value=0.35 Score=27.21 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=63.3 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 8999886652876885228899998765-021578822576289999999850597799836777899999999999972 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHA 183 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~ 183 (301) +-.++++++|+.+...+ +.+ +.++ +-+|++-|..-....++++.++.+.+|+|++-||...+++|....++.... T Consensus 38 ~~~~~~a~~~~~~~~~~--~~~--ell~~~~iD~V~I~tp~~~H~~~~~~al~~gkhV~~EKP~a~~~~e~~~l~~~a~~ 113 (344) T 3ezy_A 38 DRLREMKEKLGVEKAYK--DPH--ELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344) T ss_dssp HHHHHHHHHHTCSEEES--SHH--HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCC--CHH--HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC T ss_conf 99999999839984029--999--99649998999971631143999999997699689945721110367777777643 Q ss_pred CCCC Q ss_conf 5878 Q gi|254780669|r 184 HGAK 187 (301) Q Consensus 184 ~Gn~ 187 (301) .|.. T Consensus 114 ~~~~ 117 (344) T 3ezy_A 114 ADVI 117 (344) T ss_dssp HTCC T ss_pred CCCE T ss_conf 6976 No 28 >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Probab=94.07 E-value=0.19 Score=28.93 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=60.7 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.+++.++||+|-++ .+.+ +.++ +-+|++-|..-.....+++.++-+.||+|++-|+...+.+|....++..... T Consensus 58 ~~~~~a~~~gi~~~~--~~~~--ell~~~~iDaV~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 133 (383) T 3oqb_A 58 KVEALAKRFNIARWT--TDLD--AALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSK 133 (383) T ss_dssp HHHHHHHHTTCCCEE--SCHH--HHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCC--CCHH--HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHCC T ss_conf 999999984999221--8999--995699997899899869999999999986994780288633299998865466505 Q ss_pred C Q ss_conf 8 Q gi|254780669|r 185 G 185 (301) Q Consensus 185 G 185 (301) | T Consensus 134 g 134 (383) T 3oqb_A 134 G 134 (383) T ss_dssp T T ss_pred C T ss_conf 9 No 29 >2dqw_A Dihydropteroate synthase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2dza_A* 2dzb_A* Probab=93.96 E-value=0.37 Score=27.06 Aligned_cols=236 Identities=17% Similarity=0.232 Sum_probs=134.6 Q ss_pred CCHHHHHHCCCCCCEEEECCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCC Q ss_conf 2034454304687617831770683578772797699706999548634999999999999999655339-970660155 Q gi|254780669|r 6 PQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSF 84 (301) Q Consensus 6 pykl~~~~~~i~~~~~~~~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sf 84 (301) ++.+-.|...++...+ .+.+++... .|+++..+ -+.+.+++-|+.+.+-|+++. +|+- ++- T Consensus 16 ~~~~~~r~l~~~~~~i---MGIlNvTPD----SFsdgg~~---------~~~~~al~~a~~mi~~GAdiIDIGge--STr 77 (294) T 2dqw_A 16 TLWLRDRALDLDRVRL---LGVLNLTPD----SFSDGGRY---------LDPERALERAREMVAEGADILDLGAE--STR 77 (294) T ss_dssp EEECSSSEEECSSCEE---EEEEECCC--------------------------CCHHHHHHHHHHTCSEEEEECC----- T ss_pred EEEECCEEECCCCCEE---EEEEECCCC----CCCCCCCC---------CCHHHHHHHHHHHHHCCCCEEEECCC--CCC T ss_conf 6878996861898769---999808999----99888758---------89999999999999879989997981--279 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEE-ECHHHCCCHHHHHHHHHCCCEEE Q ss_conf 7688666322245671248889998866528768852288999987650-215788-22576289999999850597799 Q gi|254780669|r 85 DKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQ-IPALLCRQTDLLTAAAQTGRVIN 162 (301) Q Consensus 85 dKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQ-IgA~~~rqtdLl~a~a~t~kpV~ 162 (301) +.+.+. +-... ++.-+.+++.++ +.++++--|-..++-++.+.+ .+||+- |.++ +.-..+..+++.+.++. T Consensus 78 Pga~~i---~~~eE-~~Rl~pvi~~~~-~~~~~iSIDT~~~~Va~~al~~Ga~iINDVsg~--~~~~~~~~~~~~~~~~v 150 (294) T 2dqw_A 78 PGAAPV---PVEEE-KRRLLPVLEAVL-SLGVPVSVDTRKPEVAEEALKLGAHLLNDVTGL--RDERMVALAARHGVAAV 150 (294) T ss_dssp -----------CCH-HHHHHHHHHHHH-TTCSCEEEECSCHHHHHHHHHHTCSEEECSSCS--CCHHHHHHHHHHTCEEE T ss_pred CCCCCC---CCHHH-HHHHCCHHHHHC-CCCCEEEEECCCHHHHHHHHHCCCEEEEECCCC--CCCHHHHHHHHCCCCEE T ss_conf 998667---70888-864041332211-579707686898999999996497299604434--56057899986178569 Q ss_pred EECCCCCC------------H----HH-HHHHHHHHHHCCCCCEEEEECCCCCCCHH--HCCCCCCCHHHHHHCCCEEEC Q ss_conf 83677789------------9----99-99999999725878089951465444010--000000106888518716871 Q gi|254780669|r 163 VKKGQFLS------------P----WE-MHNILQKLHAHGAKDVLFCERGTSFGYNT--LVTDMRSIPIMTSMGVPVIFD 223 (301) Q Consensus 163 iKkgq~~s------------~----~e-~~~a~eki~~~Gn~~i~lcERG~~fgy~~--lvvD~~~i~~lk~~~~PVi~D 223 (301) +-..+... + .+ ....++.+.+.|.+++++ .=|+-||.+. ...=++++..++.+++||.+- T Consensus 151 im~~~~~~~~~~~~~~~~~d~i~~i~~~~~~~i~~~~~~Gi~~iii-DPGiGFgKt~~~n~~ll~~l~~~~~~g~PiLvG 229 (294) T 2dqw_A 151 VMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVL-DPGFGFGKLLEHNLALLRRLDEIVALGHPVLVG 229 (294) T ss_dssp EECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEE-ECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEEC T ss_pred EEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHCHHHHHHHHHHCCCCCCEEEE T ss_conf 9723679825555411356507899999999999999779955532-167787877132699986456641568755884 Q ss_pred HHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHCCCEEEEEECCCHH Q ss_conf 1777421223453212638899-999999997189889998369833 Q gi|254780669|r 224 ASHSVQQPGIHGNCSGGERQYI-VPLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 224 ~SHs~q~p~~~~~~~gG~r~~v-~~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) .|.=-..-.-.+...--.|.+. -..+..|+..|++ ++-||.-.+ T Consensus 230 ~SRKsfig~~~~~~~~~~R~~~Tla~~~~a~~~Ga~--iiRVHDV~~ 274 (294) T 2dqw_A 230 LSRKRTIGELSGVEDPAQRVHGSVAAHLFAVMKGVR--LLRVHDVRA 274 (294) T ss_dssp CTTCHHHHHHHTCCSGGGCHHHHHHHHHHHHHTTCC--EEEESCHHH T ss_pred ECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC--EEEECCHHH T ss_conf 004567777636998788668899999999987998--999598799 No 30 >2ho3_A Oxidoreductase, GFO/IDH/MOCA family; reductive methylation, structural genomics, PSI 2, protein structure initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A Probab=93.74 E-value=0.29 Score=27.77 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=60.7 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCC Q ss_conf 99988665287688522889999876502157882257628999999985059779983677789999999999997258 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHG 185 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~G 185 (301) -.+++.++|+.+-+++-. +. ...+-+|++-|..-.-..++++.++.+.||+|++-||...+++|....++.....| T Consensus 38 ~~~~~a~~~~~~~~~~~~--e~--l~~~~iD~V~I~tp~~~H~~~~~~al~~gkhV~~EKP~a~~~~e~~~l~~~a~~~~ 113 (325) T 2ho3_A 38 TAATFASRYQNIQLFDQL--EV--FFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNN 113 (325) T ss_dssp HHHHHGGGSSSCEEESCH--HH--HHTSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCCCCCHH--HH--HHCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 999999984998356859--99--71899989999589603159999998634512227983111102467777887617 Q ss_pred C Q ss_conf 7 Q gi|254780669|r 186 A 186 (301) Q Consensus 186 n 186 (301) . T Consensus 114 ~ 114 (325) T 2ho3_A 114 C 114 (325) T ss_dssp C T ss_pred C T ss_conf 6 No 31 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Probab=93.70 E-value=0.2 Score=28.87 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=61.1 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.+++.++||+|...+ +.+ +.++ +-+|++-|.+-.-...+++.++.+.||+|++-|+...+..|.....+..... T Consensus 42 ~~~~~a~~~~~~~~~~--~~~--~ll~~~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPl~~~~~e~~~l~~~~~~~ 117 (330) T 3e9m_A 42 NAQKMAKELAIPVAYG--SYE--ELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQ 117 (330) T ss_dssp HHHHHHHHTTCCCCBS--SHH--HHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCEECC--CHH--HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999839980419--999--995489999899899707689999999985995764032112256778899999863 Q ss_pred CC Q ss_conf 87 Q gi|254780669|r 185 GA 186 (301) Q Consensus 185 Gn 186 (301) |- T Consensus 118 ~~ 119 (330) T 3e9m_A 118 GV 119 (330) T ss_dssp TC T ss_pred CC T ss_conf 54 No 32 >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Probab=93.56 E-value=0.21 Score=28.70 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=60.3 Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 9886652876885228899998765-021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 108 RDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 108 ~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) +...+..+.++.+++.+ .+. +-+|++-|.+......++..++.+.||+|++-|+...+++|....++.....|- T Consensus 43 ~~~~~~~~~~~~~~~~e-----ll~~~~iD~V~i~tp~~~H~~~~~~al~agkhV~~EKP~a~~~~e~~~l~~~~~~~g~ 117 (349) T 3i23_A 43 AAPFKEKGVNFTADLNE-----LLTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGV 117 (349) T ss_dssp HHHHHTTTCEEESCTHH-----HHSCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC T ss_pred HHHHHCCCCCEECCHHH-----HHCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHHHHCCC T ss_conf 99755389935799999-----9659998889988871456788999998499187517742002210220234542697 No 33 >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} Probab=93.50 E-value=0.45 Score=26.54 Aligned_cols=226 Identities=10% Similarity=0.093 Sum_probs=124.6 Q ss_pred ECCCEEEECCCCCCEEECCCCCE--E-----------EEECCCCCCC----HHH----------HHHHHHHHHHHHHHCC Q ss_conf 31770683578772797699706--9-----------9954863499----999----------9999999999655339 Q gi|254780669|r 23 HTNAAIHLGSGKNQVTFSNEQRF--V-----------LIAGPCQIES----HDH----------AFMIAEKLYAICQSLN 75 (301) Q Consensus 23 ~~~~~~~ig~~~~~i~ig~~~~l--~-----------iIAGPCsiES----~e~----------~~~~A~~lk~~~~~~~ 75 (301) -.-+.+.+|.+..-+++||+.-| + +.-.=|-..+ +.. ....|+.+.+.|+++. T Consensus 12 ~~i~ev~iG~g~~~v~iGge~vlp~~~fe~~~~n~p~ia~~i~D~~~~~~~~~~~~~~~~~~~d~v~~Ak~~ve~GADiI 91 (310) T 2h9a_B 12 SKVVEVTLGTGDKTVTLGGDSTLPFLTFEGEMPNPPRFALEVFDTPPTDWPDILVEPFKDVINDPVAWAKKCVEYGADIV 91 (310) T ss_dssp CCCCEEEESCGGGCEEEECCSSSTTCTTSSCCCSCCEEEEEEESSCCSSCCHHHHGGGTTTTTCHHHHHHHHHHTTCSEE T ss_pred CCCEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 87469998788737998996665540116667889848999528995577999999987777769999999997299889 Q ss_pred -CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECC-----CHHHHHHHHHH-CCE--EEECHHHCC Q ss_conf -970660155768866632224567124888999886652876885228-----89999876502-157--882257628 Q gi|254780669|r 76 -IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVH-----TEQQCEAIADS-VDI--LQIPALLCR 146 (301) Q Consensus 76 -~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~-----~~~~~e~~~~~-vDi--lQIgA~~~r 146 (301) +++ . -|.|.+..- ..++-.+-.+.+.+..++|++-+.. ++.-++..++. .|. +--++ .-- T Consensus 92 dIg~--~-------StrPg~~~v-s~eee~~rV~~V~~~v~~pl~i~~~~~d~~d~~v~~~al~~~~~~~~li~~~-~~~ 160 (310) T 2h9a_B 92 ALRL--V-------SAHPDGQNR-SGAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSA-TKD 160 (310) T ss_dssp EEEC--G-------GGCTTTTCC-CHHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEE-CTT T ss_pred EECC--C-------CCCCCCCCC-CHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCC-CCC T ss_conf 9715--1-------189998878-9999999999999986898074234244664999999999735103562335-400 Q ss_pred CH-HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCC-CCCHH--HCCCCCC-----CHHHHH Q ss_conf 99-99999850597799836777899999999999972587--80899514654-44010--0000001-----068885 Q gi|254780669|r 147 QT-DLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA--KDVLFCERGTS-FGYNT--LVTDMRS-----IPIMTS 215 (301) Q Consensus 147 qt-dLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn--~~i~lcERG~~-fgy~~--lvvD~~~-----i~~lk~ 215 (301) |+ .++..+++.+.||.+.-+ ..++......+++.+.|- ++|++ .=|+. |||+- ....+.. +...+. T Consensus 161 n~~~m~~~a~~~~~pvi~~~~--~d~~~~k~l~~~l~~~GI~~~~Iil-DPGig~fGk~~e~~~~~~~~iR~~aL~~~~~ 237 (310) T 2h9a_B 161 NYKPIVATCMVHGHSVVASAP--LDINLSKQLNIMIMEMNLAPNRIIM-DPLIGALGYGIEYSYSIIERMRLGALTGDKI 237 (310) T ss_dssp THHHHHHHHHHHTCEEEEECS--SCHHHHHHHHHHHHTTTCCGGGEEE-ECCCCCTTTTHHHHHHHHHHHHHHHHTTCGG T ss_pred CHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHCCCCHHHEEE-ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 148999999982998999878--5389999999999986999778898-1576434678889999999999875334655 Q ss_pred HCCCEEECHHHHHHHCCC---CCCCCCCCHH----HH-HHHHHHHHHHCCCEEEE Q ss_conf 187168711777421223---4532126388----99-99999999718988999 Q gi|254780669|r 216 MGVPVIFDASHSVQQPGI---HGNCSGGERQ----YI-VPLAKAAVAIGIAGIFL 262 (301) Q Consensus 216 ~~~PVi~D~SHs~q~p~~---~~~~~gG~r~----~v-~~la~aa~a~G~dGlfi 262 (301) +++|+++-+|.-...-.- .....-|..+ +. ..+|-+++..|+|=+.+ T Consensus 238 lg~Pil~g~srks~~~k~~~~~~~~~~g~~~~~~~~~e~~~a~~~~~~GadI~rv 292 (310) T 2h9a_B 238 LAMPVVCFIGQEAWKAKEAKDPEVAEWGDYALRAIHWETVTTVALIQAGGHLFVM 292 (310) T ss_dssp GCSCBEECHHHHHTTSHHHHCSCCGGGCCHHHHHHHHHHHHHHHHHHHTCCEEEE T ss_pred CCCCEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 7998798206778757762588400026524433579999999999879989996 No 34 >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Probab=93.46 E-value=0.29 Score=27.76 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=63.4 Q ss_pred HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 88899988665287688522889999876502157882257628999999985059779983677789999999999997 Q gi|254780669|r 103 GREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLH 182 (301) Q Consensus 103 gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~ 182 (301) ..+-.+++.++||++-.++-.+ +.+.+-+|++=|..-.-...++..++.+.||+|++-||..++++|+...++... T Consensus 36 ~~~~~~~~a~~~~~~~~~~~~~----~ll~~~iD~V~I~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~ 111 (323) T 1xea_A 36 NPKVLGTLATRYRVSATCTDYR----DVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAE 111 (323) T ss_dssp CHHHHHHHHHHTTCCCCCSSTT----GGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCCEECCHH----HHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCCCC T ss_conf 9999999999839984108899----995589999998178267799999998638966874576442555212101111 Q ss_pred HCCCC Q ss_conf 25878 Q gi|254780669|r 183 AHGAK 187 (301) Q Consensus 183 ~~Gn~ 187 (301) ..|-. T Consensus 112 ~~~~~ 116 (323) T 1xea_A 112 KHHQP 116 (323) T ss_dssp HTTCC T ss_pred CCCCC T ss_conf 34553 No 35 >2o4u_X Dimeric dihydrodiol dehydrogenase; NADP-binding rossmann-fold domain, predominantly anti- parallel beta sheet, oxidoreductase; 2.00A {Macaca fascicularis} PDB: 2o48_X 2poq_X* Probab=93.14 E-value=0.27 Score=28.03 Aligned_cols=78 Identities=9% Similarity=0.154 Sum_probs=60.9 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 8999886652876885228899998765-021578822576289999999850597799836777899999999999972 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHA 183 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~ 183 (301) +-.+++.++|++|-.++ +.++ .+. +.+|++-|.+-....++++.++.+.||+|++-|+...+..|....++-... T Consensus 40 ~~~~~~a~~~~~~~~~~--~~~~--ll~~~~iD~v~I~tp~~~h~~~~~~al~~gkhVl~EKP~~~~~~e~~~l~~~a~~ 115 (334) T 2o4u_X 40 SRAKEFAQKHDIPKAYG--SYEE--LAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARS 115 (334) T ss_dssp HHHHHHHHHHTCSEEES--SHHH--HHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEEC--CHHH--HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHH T ss_conf 99999999839982548--9999--9569999889990565411477899998699188469862122210234444542 Q ss_pred CCC Q ss_conf 587 Q gi|254780669|r 184 HGA 186 (301) Q Consensus 184 ~Gn 186 (301) .|. T Consensus 116 ~~~ 118 (334) T 2o4u_X 116 RGL 118 (334) T ss_dssp HTC T ss_pred CCC T ss_conf 354 No 36 >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* Probab=93.07 E-value=0.52 Score=26.10 Aligned_cols=148 Identities=18% Similarity=0.245 Sum_probs=64.1 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 488899988665287688522889999876502-1578822576289999999850597799836777899999999999 Q gi|254780669|r 102 KGREIFRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~ek 180 (301) +-|+-|.+...++|+-++.|||+..+++.+.+. ++++-|-.|+-.+++ .+++.......+ T Consensus 144 ~~l~~l~~~a~~lgl~~LvEvh~~~el~~a~~~~a~iiGINnRdL~t~~-------------------~d~~~~~~l~~~ 204 (452) T 1pii_A 144 DQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLS-------------------IDLNRTRELAPK 204 (452) T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTE-------------------ECTHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCE-------------------ECHHHHHHHHCC T ss_conf 8999999999984886599978999999998289998999798863150-------------------877999998610 Q ss_pred HHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEE--------ECHHHHHHHCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 97258780899514654440100000001068885187168--------7117774212234532126388999999999 Q gi|254780669|r 181 LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVI--------FDASHSVQQPGIHGNCSGGERQYIVPLAKAA 252 (301) Q Consensus 181 i~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi--------~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa 252 (301) + ...-+++.|-|+.. .. |.+. |+....-|. -||...++.--.+.....|-+.. .-+++| T Consensus 205 i---p~~~~~vseSGI~~-~~----d~~~---~~~g~~~~LiG~~lm~~~~~~~~~~~l~~~~~~icgit~~--eda~~a 271 (452) T 1pii_A 205 L---GHNVTVISESGINT-YA----QVRE---LSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRG--QDAKAA 271 (452) T ss_dssp H---CTTSEEEEESCCCC-HH----HHHH---HTTTCSEEEECHHHHTCSCHHHHHHHHHHCSCEECCCCSH--HHHHHH T ss_pred C---CCCCEEEECCCCCC-HH----HHHH---HHCCCCEEEECHHHCCCCCHHHHHHHHHCCCCCCCCCCCH--HHHHHH T ss_conf 7---87867998479999-99----9999---9817999998956438999999999995699888775677--999999 Q ss_pred HHHCCC--EEEEEECCCHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 971898--89998369833479782018688999999999 Q gi|254780669|r 253 VAIGIA--GIFLETHQDPDNAPSDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 253 ~a~G~d--GlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~ 290 (301) ..+|+| |+.. .++ ++--+++++..++... T Consensus 272 ~~~GaD~iGfIf--~~~-------SpR~V~~e~a~~i~~~ 302 (452) T 1pii_A 272 YDAGAIYGGLIF--VAT-------SPRCVNVEQAQEVMAA 302 (452) T ss_dssp HHHTCSEEEEEC--CTT-------CTTBCCHHHHHHHHHH T ss_pred HHCCCCEEEEEC--CCC-------CCCCCCHHHHHHHHHH T ss_conf 866998897757--899-------9886799999999974 No 37 >1zh8_A Oxidoreductase; TM0312, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE NAP; 2.50A {Thermotoga maritima MSB8} SCOP: c.2.1.3 d.81.1.5 Probab=92.85 E-value=0.56 Score=25.91 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=60.3 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 9998866528768852288999987650-215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.++++++|+.+.+++ +.+ |.+++ -+|++-|..-.....+++.++.+.||+|++-||...+++|....++..... T Consensus 57 ~~~~~~~~~~~~~~~~--~~~--ell~~~~iD~V~I~tp~~~H~~~~~~al~agk~Vl~EKP~~~~~~e~~~l~~~a~~~ 132 (340) T 1zh8_A 57 HAEEFAKMVGNPAVFD--SYE--ELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKS 132 (340) T ss_dssp HHHHHHHHHSSCEEES--CHH--HHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHC T ss_pred HHHHHHHHCCCCCEEC--CHH--HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 9999999839983538--899--995599999899138703457899999866996576367413211134666677651 Q ss_pred CC Q ss_conf 87 Q gi|254780669|r 185 GA 186 (301) Q Consensus 185 Gn 186 (301) |. T Consensus 133 ~~ 134 (340) T 1zh8_A 133 EK 134 (340) T ss_dssp SS T ss_pred CC T ss_conf 33 No 38 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Probab=92.73 E-value=0.39 Score=26.96 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=56.8 Q ss_pred HHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 6528768852288999987650-21578822576289999999850597799836777899999999999972587 Q gi|254780669|r 112 KKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 112 ~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) .++++++.++ .+ +.+.+ -+|++-|.+-....++++.++.+.||+|++-||...+++|....++.....|- T Consensus 47 ~~~~~~~~~~---~~--ell~~~~iD~V~i~tp~~~h~~~~~~al~~gkhv~~EKP~a~~~~e~~~l~~~~~~~~~ 117 (359) T 3e18_A 47 AQKGLKIYES---YE--AVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNK 117 (359) T ss_dssp HTTTCCBCSC---HH--HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC T ss_pred HHCCCCCCCC---HH--HHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 8629970199---99--99559998989987880552356788885398199957864208788788999975276 No 39 >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Probab=92.42 E-value=0.63 Score=25.54 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=60.6 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.++++++||+++-+ ..+.+ +.++ .-+|++-|..-....++++.++.+.|++|++-|+...+..+....++..... T Consensus 40 ~~~~~~~~~~~~~~~-~~~~~--~ll~~~~~D~V~i~tp~~~H~~~~~~al~~gkhv~~EKP~a~~~~e~~~l~~~a~~~ 116 (344) T 3mz0_A 40 AAQKVVEQYQLNATV-YPNDD--SLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344) T ss_dssp HHHHHHHHTTCCCEE-ESSHH--HHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCE-ECCHH--HHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 999999985899806-79999--995599988899626521159999999854997264687421200478999998752 Q ss_pred CCCCEE Q ss_conf 878089 Q gi|254780669|r 185 GAKDVL 190 (301) Q Consensus 185 Gn~~i~ 190 (301) +..-++ T Consensus 117 ~~~~~~ 122 (344) T 3mz0_A 117 GKRLVQ 122 (344) T ss_dssp SSCCEE T ss_pred CCCEEE T ss_conf 043057 No 40 >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A Probab=92.31 E-value=0.65 Score=25.46 Aligned_cols=203 Identities=17% Similarity=0.162 Sum_probs=124.7 Q ss_pred CCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH Q ss_conf 999999999999999655339-9706601557688666322245671248889998866528768852288999987650 Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIAD 133 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~ 133 (301) -+.+.+++-|+.+.+-|+++. +|+. ++-+.+...|+ .. -++.-+.+++.++++++.++--|-..++-++.+.+ T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGge--STrPga~~is~---ee-E~~Rl~pvi~~l~~~~~~~iSIDT~~~~Va~~al~ 108 (282) T 1aj0_A 35 NSLIDAVKHANLMINAGATIIDVGGE--STRPGAAEVSV---EE-ELQRVIPVVEAIAQRFEVWISVDTSKPEVIRESAK 108 (282) T ss_dssp THHHHHHHHHHHHHHHTCSEEEEESS--CCSTTCCCCCH---HH-HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCE--ECCCCCCCCCH---HH-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH T ss_conf 89999999999999879969987973--47998912788---99-99887899999862467208886899899999996 Q ss_pred -HCCEEE-ECHHHCCCHHHHHHHHHCCCEEEEECCC-------C----C----CHHH-HHHHHHHHHHCCCC-CEEEEEC Q ss_conf -215788-2257628999999985059779983677-------7----8----9999-99999999725878-0899514 Q gi|254780669|r 134 -SVDILQ-IPALLCRQTDLLTAAAQTGRVINVKKGQ-------F----L----SPWE-MHNILQKLHAHGAK-DVLFCER 194 (301) Q Consensus 134 -~vDilQ-IgA~~~rqtdLl~a~a~t~kpV~iKkgq-------~----~----s~~e-~~~a~eki~~~Gn~-~i~lcER 194 (301) .+||+- |.++ +.-.++..+++.+.++.+---+ . . ...+ +...++.+.+.|-. +=++..= T Consensus 109 ~G~~iINDvsg~--~~~~~~~~va~~~~~~vl~h~~g~p~~~~~~~~~~dvi~~v~~~f~~~i~~~~~~GI~~~~IilDP 186 (282) T 1aj0_A 109 VGAHIINDIRSL--SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDP 186 (282) T ss_dssp TTCCEEEETTTT--CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEC T ss_pred CCCEEEECCCCC--CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEECCC T ss_conf 598189444335--660578888642998387504899776544786543467899999999999998699876083688 Q ss_pred CCCCCCHH--HCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHCCCEEEEEECCCH Q ss_conf 65444010--0000001068885187168711777421223453212638899-99999999718988999836983 Q gi|254780669|r 195 GTSFGYNT--LVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYI-VPLAKAAVAIGIAGIFLETHQDP 268 (301) Q Consensus 195 G~~fgy~~--lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v-~~la~aa~a~G~dGlfiE~Hp~P 268 (301) |+-||.+. ...=++++..++.+++|+.+-.|---......+.. ...|... ..++-.|+..|++ ++-||.-. T Consensus 187 G~GFgK~~~~n~~ll~~l~~~~~l~~PilvG~SRKsfi~~~~~~~-~~eRl~~Tla~~~~a~~~Ga~--ilRvHdV~ 260 (282) T 1aj0_A 187 GFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVG-PSERLSGSLACAVIAAMQGAH--IIRVHDVK 260 (282) T ss_dssp CTTSSCCHHHHHHHHHTGGGGGGGCSCBEECCTTCHHHHHHHTCC-GGGCHHHHHHHHHHHHHTTCS--EEEESCHH T ss_pred CCCCCCCHHHHHHHHHCHHHHHCCCCCEEEECCHHHHHHHHHCCC-HHHHCHHHHHHHHHHHHCCCC--EEEECCHH T ss_conf 867688855249999682877347982599633877888884799-565031699999999987999--99959889 No 41 >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Probab=92.09 E-value=0.69 Score=25.28 Aligned_cols=191 Identities=16% Similarity=0.262 Sum_probs=110.5 Q ss_pred ECCCEEEECCCCCCEEECCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 3177068357877279769970699954863499--99999999999996553399706601557688666322245671 Q gi|254780669|r 23 HTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIES--HDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGL 100 (301) Q Consensus 23 ~~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES--~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gl 100 (301) ...+.+.+ +++.|||++|..+=+ -+.... -+..++-...|.+.|..+. |-.. +. T Consensus 14 R~T~~V~V----G~v~IGG~aPv~VQS-Mt~t~t~D~eat~~qI~~L~~aG~EiV-------------RvaV-----p~- 69 (366) T 3noy_A 14 RKTRQIRV----GNVKIGGDAPIVVQS-MTSTKTHDVEATLNQIKRLYEAGCEIV-------------RVAV-----PH- 69 (366) T ss_dssp CCCCCEEE----TTEEESTTSCCEEEE-ECCSCTTCHHHHHHHHHHHHHTTCCEE-------------EEEC-----CS- T ss_pred CCCEEEEE----CCEEECCCCCCEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEE-------------EECC-----CC- T ss_conf 46537998----286247999501565-599975459999999999998599989-------------9844-----99- Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCHHHHHH--HHHHCCEEEECHHHCCCHH----HHHHHHHCCCEEEEE---------- Q ss_conf 248889998866528768852288999987--6502157882257628999----999985059779983---------- Q gi|254780669|r 101 KKGREIFRDLKKKYGFPILTDVHTEQQCEA--IADSVDILQIPALLCRQTD----LLTAAAQTGRVINVK---------- 164 (301) Q Consensus 101 e~gL~il~e~k~~~glpv~TeV~~~~~~e~--~~~~vDilQIgA~~~rqtd----Ll~a~a~t~kpV~iK---------- 164 (301) .+..+-|.+++++..+|++-|+|-..++.. +...+|-+.|---|.-..+ +++++.+.++|+-+= T Consensus 70 ~~~a~al~~I~~~~~iPlvaDiHf~~~la~~a~~~g~~kiRINPGNig~~~~~~~vv~~ak~~~i~iRIGvN~GSL~~~~ 149 (366) T 3noy_A 70 KEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDL 149 (366) T ss_dssp HHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHH T ss_pred HHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHH T ss_conf 99999699999718988540043353355677664220023574334722776899999997699736535657578999 Q ss_pred --CCCCCCHHHHH----HHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHHHHCCCCCCC Q ss_conf --67778999999----99999972587808995146544401000000010688-851871687117774212234532 Q gi|254780669|r 165 --KGQFLSPWEMH----NILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSVQQPGIHGNC 237 (301) Q Consensus 165 --kgq~~s~~e~~----~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~q~p~~~~~~ 237 (301) |-...+++-|. ..++.+.+.|-.++++ |+-..+..+-+++--.+ +++.+|.-+-.|.+ T Consensus 150 l~~~~~~~~~amvesal~~i~~~e~~~f~~i~i-----S~KsS~v~~~i~ayrlla~~~dyPLHLGvTEA---------- 214 (366) T 3noy_A 150 LEKYGYPSAEALAESALRWSEKFEKWGFTNYKV-----SIKGSDVLQNVRANLIFAERTDVPLHIGITEA---------- 214 (366) T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEE-----EEECSSHHHHHHHHHHHHHHCCCCEEECCSSC---------- T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEE-----EEEECCHHHHHHHHHHHHHCCCCCEEEEEEEC---------- T ss_conf 976246302346589999999998648876446-----78844199999999998642687627767603---------- Q ss_pred CCCCHHHHHHHHHHHHHHC Q ss_conf 1263889999999999718 Q gi|254780669|r 238 SGGERQYIVPLAKAAVAIG 256 (301) Q Consensus 238 ~gG~r~~v~~la~aa~a~G 256 (301) |... ..+-++++++| T Consensus 215 --G~~~--~g~IkSsigiG 229 (366) T 3noy_A 215 --GMGT--KGIIKSSVGIG 229 (366) T ss_dssp --CSHH--HHHHHHHHHHH T ss_pred --CCCC--CCCCCCHHHHH T ss_conf --6752--22125377799 No 42 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Probab=91.99 E-value=0.71 Score=25.21 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=71.8 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCC Q ss_conf 99886652876885228899998765-02157882257628999999985059779983677789999999999997258 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHG 185 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~G 185 (301) .++..++|+++.+++ +.++ .++ +-+|++-|..-.....+++.++.+.|++|++-||...+++|.....+.....+ T Consensus 38 ~~~~~~~~~~~~~~~--~~~e--~l~~~~iD~v~i~tp~~~H~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~~~~~~ 113 (332) T 2glx_A 38 GAAYATENGIGKSVT--SVEE--LVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAG 113 (332) T ss_dssp HHHHHHHTTCSCCBS--CHHH--HHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCEEC--CHHH--HHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 999999809994018--9999--956999999999688446578899999869987536773035789999887665402 Q ss_pred CCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHH Q ss_conf 7808995146544401000000010688851871687117774 Q gi|254780669|r 186 AKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSV 228 (301) Q Consensus 186 n~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~ 228 (301) . .+++ |...-|+..+..++.+..-.+.+-++-+...|.. T Consensus 114 ~-~~~v---~~~~r~~p~~~~~~~~i~~g~lG~i~~~~~~~~~ 152 (332) T 2glx_A 114 V-VLGT---NHHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAV 152 (332) T ss_dssp C-CEEE---CCCGGGSHHHHHHHHHHHTTTTSSEEEEEEEEEC T ss_pred C-CCCC---CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECC T ss_conf 3-3333---3112103899999999975888845999999734 No 43 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Probab=91.94 E-value=0.72 Score=25.18 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=61.0 Q ss_pred HHHHHHHHHHHHCCE--EEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 888999886652876--885228899998765-02157882257628999999985059779983677789999999999 Q gi|254780669|r 103 GREIFRDLKKKYGFP--ILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQ 179 (301) Q Consensus 103 gL~il~e~k~~~glp--v~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~e 179 (301) ...-.+++.++|+++ +-++ .++ .+. +-+|++-|..-.-..++++.++.+.||+|++-||...+++|.....+ T Consensus 38 ~~~~~~~~~~~~~~~~~~y~~---~~e--ll~~~~iD~V~i~tp~~~H~~~~~~al~~gk~Vl~EKP~a~~~~ea~~l~~ 112 (337) T 3ip3_A 38 DLSKLEKAISEMNIKPKKYNN---WWE--MLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRS 112 (337) T ss_dssp CCHHHHHHHHTTTCCCEECSS---HHH--HHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCCEEECC---HHH--HHCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH T ss_conf 899999999984999704099---999--964899888999588616799999999879969994785444012223455 Q ss_pred HHHHCCCC Q ss_conf 99725878 Q gi|254780669|r 180 KLHAHGAK 187 (301) Q Consensus 180 ki~~~Gn~ 187 (301) -....|+. T Consensus 113 ~~~~~~~~ 120 (337) T 3ip3_A 113 VYQKVRNE 120 (337) T ss_dssp HHHHHTTT T ss_pred HHHCCCCC T ss_conf 43200243 No 44 >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 Probab=91.89 E-value=0.59 Score=25.76 Aligned_cols=113 Identities=14% Similarity=0.032 Sum_probs=76.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCHHHHHHHHH-HCC Q ss_conf 9999999999655339970660155768866632224567124888999886652876885--2288999987650-215 Q gi|254780669|r 60 AFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DVHTEQQCEAIAD-SVD 136 (301) Q Consensus 60 ~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV~~~~~~e~~~~-~vD 136 (301) ..++|+...+.|+.. + -- =|-+..|.|. ++.|+.+++.+.+||+- =|-++.|+..... .+| T Consensus 67 p~~~a~~y~~~GA~a----i-SV------LTe~~~F~Gs-----~~dl~~vr~~~~~PiLrKDFIid~~QI~eAr~~GAD 130 (254) T 1vc4_A 67 PVEAALAYARGGARA----V-SV------LTEPHRFGGS-----LLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGAS 130 (254) T ss_dssp HHHHHHHHHHTTCSE----E-EE------ECCCSSSCCC-----HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCS T ss_pred HHHHHHHHHHCCCCE----E-EE------ECCCCCCCCC-----HHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCC T ss_conf 999999999879918----9-99------6587778987-----899999998618872027774769999999982862 Q ss_pred EEEECHHHCCC--HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 78822576289--999999850597799836777899999999999972587808995146 Q gi|254780669|r 137 ILQIPALLCRQ--TDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 137 ilQIgA~~~rq--tdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG 195 (301) .+-+-|.+..+ .+|+..+.+.|--+++.=+ +.+|+ ++....|.+-|.+--|- T Consensus 131 aiLLIaal~~~~l~~l~~~A~~lGle~LVEvh---~~~El----~~a~~~~a~iIGINnRd 184 (254) T 1vc4_A 131 AALLIVALLGELTGAYLEEARRLGLEALVEVH---TEREL----EIALEAGAEVLGINNRD 184 (254) T ss_dssp EEEEEHHHHGGGHHHHHHHHHHHTCEEEEEEC---SHHHH----HHHHHHTCSEEEEESBC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC---CHHHH----HHHHCCCCCEEEEECCC T ss_conf 79999998788899999999984886278707---88897----24223899789873577 No 45 >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} Probab=91.77 E-value=0.29 Score=27.82 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=56.1 Q ss_pred HHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 86652876885228899998765-021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 110 LKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 110 ~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) ++++|++|-.++- .+ +.+. .-+|++-|.+-.....++++++.+.||+|++-||...+++|.....+...+.|. T Consensus 46 ~a~~~~~~~~~~~--~~--~ll~~~~~D~V~I~tp~~~H~~~~~~al~~gk~vl~EKP~a~~~~e~~~l~~~~~~~~~ 119 (329) T 3evn_A 46 FANKYHLPKAYDK--LE--DMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNL 119 (329) T ss_dssp ---CCCCSCEESC--HH--HHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTC T ss_pred HHHHCCCCCEECC--HH--HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 9998599806689--99--99628898889905826655577899998799899972454558998654445531354 No 46 >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Probab=91.65 E-value=0.5 Score=26.24 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=48.4 Q ss_pred HHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 5021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 132 ADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 132 ~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) .+-+|++.|-+-+....+++.++.+.||+|++-||..++++|....++...+.+. T Consensus 70 ~~~iD~V~I~tp~~~H~~~~~~al~~gk~Vl~EKP~a~~~~e~~~l~~~~~~~~~ 124 (312) T 3o9z_A 70 GEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGR 124 (312) T ss_dssp TCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCC T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCC T ss_conf 7996599998995789999999997199489804875877787789999886398 No 47 >2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} Probab=91.49 E-value=0.8 Score=24.86 Aligned_cols=220 Identities=16% Similarity=0.149 Sum_probs=134.5 Q ss_pred CCCEEEECCCCCCEEECCCCC----------EEEEE-CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CC Q ss_conf 177068357877279769970----------69995-4863499999999999999965533997066015576886-66 Q gi|254780669|r 24 TNAAIHLGSGKNQVTFSNEQR----------FVLIA-GPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANR-SS 91 (301) Q Consensus 24 ~~~~~~ig~~~~~i~ig~~~~----------l~iIA-GPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanR-tS 91 (301) +-+.+.||.|...+++||+.= ...|| ==|-..+++.+....+.+.+...+ -.+-.|++-+--- | +| T Consensus 60 pIreV~iG~G~kav~IGGEtvLfRhE~tf~Npp~iAi~V~D~m~ee~i~~~~~~~~~~~~~-rVG~~l~~D~ial-r~~S 137 (445) T 2h9a_A 60 PVALIKVGKGEKVLEIGHETVLFRHDKRFEHPCGLAILVEDTLSEGEIKERVEKINKLVFD-RVGQMHSVNLVAL-KGSS 137 (445) T ss_dssp CSCCEEESCTTSCEEECCCCCSSGGGSCCCSCCEEEEEEETTSCHHHHHHHHHHHHTCEEE-ETTEEEECCEEEE-ECTT T ss_pred CCCEEEECCCCCEEEECCEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEE-EECC T ss_conf 8614786378734998991367504315679980699973588738799999888887788-8888724877999-8189 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHH-CC-EEEECHHHCCCHHHHHHHHH-CCCEEEEECCCC Q ss_conf 3222456712488899988665287688522889999876502-15-78822576289999999850-597799836777 Q gi|254780669|r 92 LAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADS-VD-ILQIPALLCRQTDLLTAAAQ-TGRVINVKKGQF 168 (301) Q Consensus 92 ~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~-vD-ilQIgA~~~rqtdLl~a~a~-t~kpV~iKkgq~ 168 (301) - .-++-.+..+++.+..++|++-. .+++-++.++++ .| =.=|.+-+--|++-+-++++ .+-||-++- T Consensus 138 ~------Dpe~fak~Vk~VaeavdvPLIL~-sD~evlkaale~~~~~rpLL~aAt~dNy~~m~~lAk~y~~plvvss--- 207 (445) T 2h9a_A 138 Q------DAATFAKAVATAREVTDLPFILI-GTPEQLAAALETEGANNPLLYAATADNYEQMVELAKKYNVPLTVSA--- 207 (445) T ss_dssp C------CHHHHHHHHHHHHHHCCSCEEEE-SCHHHHHHHHHHHGGGCCEEEEECTTTHHHHHHHHHHHTCCEEEEC--- T ss_pred C------CHHHHHHHHHHHHHCCCCCEEEE-CCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEC--- T ss_conf 9------99999999999982479778996-8899999999984777875536778689999999997597399957--- Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCC--HHHCCCCCCCHHHH---HHCCCEEECHHHHHHHCCCCCCCCCCCH Q ss_conf 8999999999999725878089951465-4440--10000000106888---5187168711777421223453212638 Q gi|254780669|r 169 LSPWEMHNILQKLHAHGAKDVLFCERGT-SFGY--NTLVTDMRSIPIMT---SMGVPVIFDASHSVQQPGIHGNCSGGER 242 (301) Q Consensus 169 ~s~~e~~~a~eki~~~Gn~~i~lcERG~-~fgy--~~lvvD~~~i~~lk---~~~~PVi~D~SHs~q~p~~~~~~~gG~r 242 (301) .++++...-++++.+.|.++|++=- |+ .-|| .+. +-+|-..+.+ .+++|+|.-|..+ . T Consensus 208 ~Din~lk~L~~~l~~~Gv~dIVLDP-g~~~lg~~le~~-~~IRRaAl~~~dr~lgyPiI~~~~~~--------------~ 271 (445) T 2h9a_A 208 KGLDALAELVQKITALGYKNLILDP-QPENISEGLFYQ-TQIRRLAIKKLFRPFGYPTIAFALDE--------------N 271 (445) T ss_dssp SSHHHHHHHHHHHHHTTCCCEEEEC-CCSSHHHHHHHH-HHHHHHHHHSCCGGGCSCBEEECCCS--------------S T ss_pred CCHHHHHHHHHHHHHCCCCCEEECC-CCCCHHHHHHHH-HHHHHHHHHCCCCCCCCCEEEECCCC--------------C T ss_conf 9989999999999975997489889-872077899999-99999997547955689677642678--------------8 Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHC Q ss_conf 89999999999718988999836983347 Q gi|254780669|r 243 QYIVPLAKAAVAIGIAGIFLETHQDPDNA 271 (301) Q Consensus 243 ~~v~~la~aa~a~G~dGlfiE~Hp~P~~A 271 (301) .+-+.+.-+....-+.++++=-.-+|..+ T Consensus 272 ~~~e~~~As~~~~kYa~i~vl~~~~~~~~ 300 (445) T 2h9a_A 272 PYQAVMEASVYIAKYAGIIVLNTVEPADI 300 (445) T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCHHHH T ss_pred HHHHHHHHHHHHHHHCCEEEECCCCHHHH T ss_conf 59999999999987565899726888886 No 48 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Probab=91.38 E-value=0.39 Score=26.91 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=59.1 Q ss_pred HHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE Q ss_conf 66528768852288999987650215788225762899999998505977998367778999999999999725878089 Q gi|254780669|r 111 KKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVL 190 (301) Q Consensus 111 k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~ 190 (301) ++.+++++.|+. +++ .-.+-+|++-|.+-.-..+++..++.+.||+|++-|+...+.++....++.....|. .++ T Consensus 48 ~~~~~~~~~~~~---~~l-l~~~~iD~V~i~tp~~~H~~~~~~al~~gkhv~~EKP~a~~~~ea~~l~~~~~~~~~-~~~ 122 (352) T 3kux_A 48 ADWPAIPVVSDP---QML-FNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGL-LLS 122 (352) T ss_dssp TTCSSCCEESCH---HHH-HHCSSCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTC-CEE T ss_pred HHCCCCCEECCH---HHH-HCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHCCC-CCE T ss_conf 746999768989---999-569999989988868888988999998599772268742222321245667876386-300 Q ss_pred E Q ss_conf 9 Q gi|254780669|r 191 F 191 (301) Q Consensus 191 l 191 (301) + T Consensus 123 v 123 (352) T 3kux_A 123 V 123 (352) T ss_dssp E T ss_pred E T ss_conf 1 No 49 >2vp8_A Dihydropteroate synthase 2; RV1207, transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} Probab=91.28 E-value=0.84 Score=24.73 Aligned_cols=201 Identities=17% Similarity=0.134 Sum_probs=121.9 Q ss_pred CHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEEECCCHHHHHHHHH Q ss_conf 9999999999999965533-9970660155768866632224567124888999886652-8768852288999987650 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSL-NIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILTDVHTEQQCEAIAD 133 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~-~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~TeV~~~~~~e~~~~ 133 (301) +.+.+.+-|+.+.+-|+++ .+|+- ++-+-+ + ....++ ++.-+.+++.+++++ ++++--|-..++-++.+.+ T Consensus 63 ~~~~a~~~~~~mi~~GAdIIDIGae--STrPg~-~--is~eeE--~~Rl~pvi~~l~~~~~~i~iSIDT~~~~Va~~Al~ 135 (318) T 2vp8_A 63 SDAAARDAVHRAVADGADVIDVGGV--KAGPGE-R--VDVDTE--ITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACA 135 (318) T ss_dssp -CHHHHHHHHHHHHTTCSEEEEC---------------CHHHH--HHHHHHHHHHHHHHSTTCEEEEECSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC--CCCCCC-C--CCHHHH--HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH T ss_conf 9999999999999879979997982--389989-8--873576--66430799998741888608862880999999986 Q ss_pred -HCCEEE-ECHHHCCCHHHHHHHHHCCCEEEEECCCCC-------------CHHH----H----HHHHHHHHHCCCC-CE Q ss_conf -215788-225762899999998505977998367778-------------9999----9----9999999725878-08 Q gi|254780669|r 134 -SVDILQ-IPALLCRQTDLLTAAAQTGRVINVKKGQFL-------------SPWE----M----HNILQKLHAHGAK-DV 189 (301) Q Consensus 134 -~vDilQ-IgA~~~rqtdLl~a~a~t~kpV~iKkgq~~-------------s~~e----~----~~a~eki~~~Gn~-~i 189 (301) .+||+- |..+ +.-++++.+++.+.++.+---+.. ..++ + ...++.+...|.. += T Consensus 136 ~Ga~iINDVsG~--~D~~m~~~~a~~~~~~ilmH~~g~~p~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~GI~~~~ 213 (318) T 2vp8_A 136 AGADLINDTWGG--VDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREK 213 (318) T ss_dssp HTCCEEEETTSS--SSTTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG T ss_pred CCCCEEECCCCC--CCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 395499743423--696788888743886899725788986304431023320167888999999988899985980875 Q ss_pred EEEECCCCCCCH--HHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHCCCEEEEEEC Q ss_conf 995146544401--00000001068885187168711777421223453212638899999999--99718988999836 Q gi|254780669|r 190 LFCERGTSFGYN--TLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKA--AVAIGIAGIFLETH 265 (301) Q Consensus 190 ~lcERG~~fgy~--~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~a--a~a~G~dGlfiE~H 265 (301) ++..=|+-||.+ ...-=++++..++++++|+++-.|.=-..-.-.+... -.|.. .+++-+ |+..|+ -++-|| T Consensus 214 IilDPGiGFgKt~~~n~~ll~~l~~l~~lg~PiLvG~SRKsfig~i~~~~~-~~Rl~-~Tlaa~~~a~~~Ga--~iiRvH 289 (318) T 2vp8_A 214 VLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGETLGVDL-TERLE-GTLAATALAAAAGA--RMFRVH 289 (318) T ss_dssp EEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCBEECCC----------------CHH-HHHHHHHHHHHTTC--CEEEES T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCH-HHHHH-HHHHHHHHHHHCCC--CEEEEC T ss_conf 167888685766300499997788774279818999681689998858897-88537-99999999998799--999829 Q ss_pred CCHH Q ss_conf 9833 Q gi|254780669|r 266 QDPD 269 (301) Q Consensus 266 p~P~ 269 (301) .-.+ T Consensus 290 dV~~ 293 (318) T 2vp8_A 290 EVAA 293 (318) T ss_dssp CHHH T ss_pred CHHH T ss_conf 8699 No 50 >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Probab=91.23 E-value=0.42 Score=26.72 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=49.1 Q ss_pred HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 133 DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 133 ~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) +-+|++-|.+-+-..++++.++.+.||+|++-||..++.+|.....+.....|. T Consensus 64 ~~iDaV~I~tp~~~H~~~~~~al~~gkhV~~EKPla~~~~e~~~l~~~a~~~~~ 117 (294) T 1lc0_A 64 QEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR 117 (294) T ss_dssp SSEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf 999899992895666899999997599734206763899999999999998199 No 51 >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomerase; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Probab=91.20 E-value=0.8 Score=24.87 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=28.1 Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCEEEEECC Q ss_conf 3399706601557688666322245---67124888999886652876885228 Q gi|254780669|r 73 SLNIGLVYKSSFDKANRSSLAGKRG---VGLKKGREIFRDLKKKYGFPILTDVH 123 (301) Q Consensus 73 ~~~~~~ifK~sfdKanRtS~~sfrG---~Gle~gL~il~e~k~~~glpv~TeV~ 123 (301) +.+...+|=+||--|+ | .++.- +.+++-+...+++....++||+-|.- T Consensus 37 ~aGf~ai~~ss~~~a~--s-lG~pD~~~~~~~e~~~~~~~I~~~~~iPv~vD~d 87 (295) T 1s2w_A 37 EAGFKGIWGSGLSVSA--Q-LGVRDSNEASWTQVVEVLEFMSDASDVPILLDAD 87 (295) T ss_dssp HHTCSCEEECCHHHHH--T-C---------CHHHHHHHHHHHHTCSSCEEEECC T ss_pred HCCCCEEEECHHHHHH--H-CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 8599999815699999--7-6999999898789999998774025775035234 No 52 >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Probab=90.88 E-value=0.92 Score=24.48 Aligned_cols=139 Identities=19% Similarity=0.279 Sum_probs=80.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEEEC---------------------------------------CCHHHHHHH-HHHC Q ss_conf 456712488899988665287688522---------------------------------------889999876-5021 Q gi|254780669|r 96 RGVGLKKGREIFRDLKKKYGFPILTDV---------------------------------------HTEQQCEAI-ADSV 135 (301) Q Consensus 96 rG~Gle~gL~il~e~k~~~glpv~TeV---------------------------------------~~~~~~e~~-~~~v 135 (301) .|..++++.++|.+-|.+ .+||+.+- ...+.++.+ ...+ T Consensus 168 ~~~~l~~A~~~l~~~rie-~lpvvd~~g~l~glit~~di~~~~~~p~a~~D~~grL~VgAAVg~~~d~~~Ra~~Lv~aGv 246 (491) T 1zfj_A 168 VGTDLETAERILHEHRIE-KLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGA 246 (491) T ss_dssp TTCCHHHHHHHHHHTTCS-EEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHHH-CCCEECCCCCEEEEEEECCHHHHHHCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCC T ss_conf 798989999999874552-0647867896888998421244330862453245778999996777348999999997489 Q ss_pred CEEEECHHHCCCHHHHHHHHH-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC---C-------CCC Q ss_conf 578822576289999999850-----5977998367778999999999999725878089951465---4-------440 Q gi|254780669|r 136 DILQIPALLCRQTDLLTAAAQ-----TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGT---S-------FGY 200 (301) Q Consensus 136 DilQIgA~~~rqtdLl~a~a~-----t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~---~-------fgy 200 (301) |++-|-.-+-.+...+..+.+ .+.||.. |.-.+.+ +++.+...|..-|.+. -|. + +|+ T Consensus 247 Dvivid~Ahg~s~~~~~~i~~i~~~~~~~~via--GNV~t~~----~a~~L~~~Gad~v~VG-iG~Gs~cttr~~~gvg~ 319 (491) T 1zfj_A 247 DAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIA--GNIATAE----GARALYDAGVDVVKVG-IGPGSICTTRVVAGVGV 319 (491) T ss_dssp SEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEE--EEECSHH----HHHHHHHTTCSEEEEC-SSCCTTBCHHHHTCCCC T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE--EEECCHH----HHHHHHHHCCHHEEEE-EECCCCCCCCCCCCCCC T ss_conf 879995356776325789999875357776379--9606799----9999998473122520-44032114614137688 Q ss_pred HHHCCCCCCCH----HHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 10000000106----8885187168711777421223453212638899999999997189889998 Q gi|254780669|r 201 NTLVTDMRSIP----IMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 201 ~~lvvD~~~i~----~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) .. +.++. .-+.++.|||-|-.-.. ..+ ++ .|+|+|+|.+|+= T Consensus 320 pq----~tai~~~a~~~~~~~v~IIADGGi~~------------sGD----i~-KAla~GAd~VMlG 365 (491) T 1zfj_A 320 PQ----VTAIYDAAAVAREYGKTIIADGGIKY------------SGD----IV-KALAAGGNAVMLG 365 (491) T ss_dssp CH----HHHHHHHHHHHHHTTCEEEEESCCCS------------HHH----HH-HHHHTTCSEEEES T ss_pred CC----HHHHHHHHHHHHHCCCEEEECCCCCC------------CHH----HH-HHHHCCCCHHHHC T ss_conf 61----64999999989864982883588475------------218----99-9987078553333 No 53 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Probab=90.87 E-value=0.61 Score=25.66 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=59.3 Q ss_pred HHHHHHHHHHCCE-EEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 8999886652876-885228899998765-02157882257628999999985059779983677789999999999997 Q gi|254780669|r 105 EIFRDLKKKYGFP-ILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLH 182 (301) Q Consensus 105 ~il~e~k~~~glp-v~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~ 182 (301) +.+++++++|+.+ +.+++ + +.+. .-+|++-|-+-....+++..++.+.||+|++-||...+..|....++... T Consensus 42 ~~~~~~a~~~~~~~~~~~~---~--~ll~~~~iD~V~I~tp~~~H~~~~~~al~~Gk~V~~EKP~a~~~~ea~~l~~~a~ 116 (359) T 3m2t_A 42 ERARRVHRFISDIPVLDNV---P--AMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAAR 116 (359) T ss_dssp HHHGGGGGTSCSCCEESSH---H--HHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEECCH---H--HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH T ss_conf 9999999884998531899---9--9965999998998786354358999998439809998533031799999886654 Q ss_pred HCCCC Q ss_conf 25878 Q gi|254780669|r 183 AHGAK 187 (301) Q Consensus 183 ~~Gn~ 187 (301) ..|.. T Consensus 117 ~~~~~ 121 (359) T 3m2t_A 117 RSDVV 121 (359) T ss_dssp HHTCC T ss_pred HCCCC T ss_conf 11334 No 54 >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3btu_A Probab=90.71 E-value=0.6 Score=25.69 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=59.5 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCC------CEEEEECCCCCCHHHHHHHHHH Q ss_conf 9988665287688522889999876502157882257628999999985059------7799836777899999999999 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTG------RVINVKKGQFLSPWEMHNILQK 180 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~------kpV~iKkgq~~s~~e~~~a~ek 180 (301) .++..++|++|-.+-..+.+++- ..+-+|++-|-.-+-...++..++.+.| |+|++-|+...+.+|....++. T Consensus 63 a~~~a~~~~~~~~~~y~~~~~ll-~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~KhV~~EKPla~~~~ea~~l~~~ 141 (438) T 3btv_A 63 SIATIQRLKLSNATAFPTLESFA-SSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKA 141 (438) T ss_dssp HHHHHHHTTCTTCEEESSHHHHH-HCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCHHHHH-CCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 99999983999872069999995-59999889991987999999999998352015674599917713557788899998 Q ss_pred HHHCCC Q ss_conf 972587 Q gi|254780669|r 181 LHAHGA 186 (301) Q Consensus 181 i~~~Gn 186 (301) ....|. T Consensus 142 a~~~~~ 147 (438) T 3btv_A 142 AAERGV 147 (438) T ss_dssp HHTTTC T ss_pred HHHCCC T ss_conf 761398 No 55 >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Probab=90.66 E-value=0.96 Score=24.35 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=57.3 Q ss_pred HHHHHHC-CEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 8866528-76885228899998765-021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 109 DLKKKYG-FPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 109 e~k~~~g-lpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) +++++|+ .++.+++. |.+. +-+|.+-|-+-+....+++.++.+.||+|++-|+...+.+|....++.....|. T Consensus 43 ~~~~~~~~~~~~~s~~-----ell~~~~~DaV~i~tp~~~H~~~~~~al~~gk~V~~EKPla~~~~ea~~l~~~a~~~~~ 117 (358) T 3gdo_A 43 EVKRDFPDAEVVHELE-----EITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGV 117 (358) T ss_dssp HHHHHCTTSEEESSTH-----HHHTCTTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTC T ss_pred HHHHHCCCCCEECCHH-----HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECEEHHHHHHHHHHHHHHHHCCE T ss_conf 9998679983539999-----99659999999988976889999999986599898612000103678999998762451 Q ss_pred C Q ss_conf 8 Q gi|254780669|r 187 K 187 (301) Q Consensus 187 ~ 187 (301) . T Consensus 118 ~ 118 (358) T 3gdo_A 118 L 118 (358) T ss_dssp C T ss_pred E T ss_conf 5 No 56 >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Probab=90.56 E-value=0.47 Score=26.38 Aligned_cols=101 Identities=14% Similarity=0.311 Sum_probs=69.5 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CEEEEECCCHHHHHHHH-HHCC Q ss_conf 999999999996553399706601557688666322245671248889998866528-76885228899998765-0215 Q gi|254780669|r 59 HAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYG-FPILTDVHTEQQCEAIA-DSVD 136 (301) Q Consensus 59 ~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~g-lpv~TeV~~~~~~e~~~-~~vD 136 (301) ++...+..+.+.+ ..+-+++-++-++ .+++.++|+ .++.++ .+ |.+. +-+| T Consensus 16 ~~~~~~~~~~~~~--~elvav~d~~~~~--------------------~~~~~~~~~~~~~~~~---~~--ell~~~~iD 68 (336) T 2p2s_A 16 HIYDMCQQLIDAG--AELAGVFESDSDN--------------------RAKFTSLFPSVPFAAS---AE--QLITDASID 68 (336) T ss_dssp HHHHHHHHHHHTT--CEEEEEECSCTTS--------------------CHHHHHHSTTCCBCSC---HH--HHHTCTTCC T ss_pred HHHHHHHHHHCCC--CEEEEEECCCHHH--------------------HHHHHHHCCCCCEECC---HH--HHHCCCCCC T ss_conf 9999998865089--7899998999999--------------------9999987799837899---99--995599989 Q ss_pred EEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 78822576289999999850597799836777899999999999972587 Q gi|254780669|r 137 ILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 137 ilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) .+-|..-+-...+++.++.+.||+|++-||...|++|....++.....|. T Consensus 69 aV~I~tp~~~H~~~~~~al~~gk~Vl~EKPla~s~~e~~~l~~~a~~~~~ 118 (336) T 2p2s_A 69 LIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR 118 (336) T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCC T ss_conf 99996882778999999998599089627853223200468999763032 No 57 >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate ligand, isomerase; HET: AKG; 1.65A {Deinococcus ficus} Probab=89.87 E-value=1.1 Score=23.92 Aligned_cols=159 Identities=14% Similarity=0.193 Sum_probs=87.4 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCC------------HHHHHHHHH----CCCEEEEE--C Q ss_conf 899988665287688522889999876502-1578822576289------------999999850----59779983--6 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQ------------TDLLTAAAQ----TGRVINVK--K 165 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rq------------tdLl~a~a~----t~kpV~iK--k 165 (301) +-|+++.+. | -|+..++|.--+..+.+. .|.++++.+-.-. .+++..+.+ +..||.+- . T Consensus 8 ~~f~~Lh~~-~-lvlp~~~D~~SArl~e~aGf~ai~~s~~~~a~s~G~pD~~~~t~~e~~~~~~~I~~~~~~PvivD~d~ 85 (275) T 2ze3_A 8 RSFHALHQT-G-FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEA 85 (275) T ss_dssp HHHHHHHHH-C-EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTT T ss_pred HHHHHHCCC-C-CEECCCCCHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 999984679-9-36658889999999998699999840799999779998775889999999999986148874864688 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCC-------CCHHHH-HHCCCEEE-CHHHHHHHCCCCCC Q ss_conf 7778999999999999725878089951465444010000000-------106888-51871687-11777421223453 Q gi|254780669|r 166 GQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMR-------SIPIMT-SMGVPVIF-DASHSVQQPGIHGN 236 (301) Q Consensus 166 gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~-------~i~~lk-~~~~PVi~-D~SHs~q~p~~~~~ 236 (301) |+.-++..+...++++...|..-|.+=..+ ....+. +++.. .+...+ ..+.+.++ -=|-+.. .|.... T Consensus 86 Gyg~~~~~v~rtv~~~~~aG~agi~iEDq~-~~~~~~-l~~~~e~~~kI~a~~~a~~~~~~~~~i~ARTD~~~-~g~~~~ 162 (275) T 2ze3_A 86 GYGHAPEDVRRTVEHFAALGVAGVNLEDAT-GLTPTE-LYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFL-KGHGAT 162 (275) T ss_dssp CSSSSHHHHHHHHHHHHHTTCSEEEEECBC-SSSSSC-BCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTT-TTCSSS T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEECCCC-CCCCCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH-CCCCCH T ss_conf 578579999999999998268689763866-888877-66799999999999999873588416885022553-145530 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH Q ss_conf 212638899999999997189889998369833 Q gi|254780669|r 237 CSGGERQYIVPLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 237 ~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) ...|--|. ..=+++-..+|+|++|+|...+++ T Consensus 163 ~~~g~dea-i~Ra~ay~eAGAD~ifi~~~~~~e 194 (275) T 2ze3_A 163 DEERLAET-VRRGQAYADAGADGIFVPLALQSQ 194 (275) T ss_dssp HHHHHHHH-HHHHHHHHHTTCSEEECTTCCCHH T ss_pred HHHHHHHH-HHHHHHHHHCCCCEEEECCCCCHH T ss_conf 13428999-999999997499999836889999 No 58 >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Probab=89.70 E-value=0.2 Score=28.82 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=85.4 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHH-CCEEEEECCC Q ss_conf 99548634999999999999999655339970660155768866632224567124888999886-652-8768852288 Q gi|254780669|r 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLK-KKY-GFPILTDVHT 124 (301) Q Consensus 47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k-~~~-glpv~TeV~~ 124 (301) +|-|----.|.+. +.+.+...+.++.--- -+ |.+...- + +-.+|..++ ++| =||-+.-.+. T Consensus 15 LilGTgky~s~~~---~~~ai~aSgaeivTvA-lR-------R~~~~~~---~---~~~~l~~i~~~~~~~LPNTAGc~t 77 (264) T 1xm3_A 15 LLLGTGKYPSFDI---QKEAVAVSESDILTFA-VR-------RMNIFEA---S---QPNFLEQLDLSKYTLLPNTAGAST 77 (264) T ss_dssp EEEECSCSSCHHH---HHHHHHHHTCSEEEEE-TT-------SSTTC-------------CTTCCGGGSEEEEECTTCSS T ss_pred EEEECCCCCCHHH---HHHHHHHHCCCEEEEE-EE-------EECCCCC---C---CHHHHHHHHCCCEEECCCCCCCCC T ss_conf 2787389999999---9999998699879999-97-------6537777---7---357898750068487464425578 Q ss_pred HHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEE-----ECCCCCCHHHHHHHHHHHHHCC-------CCCEEEE Q ss_conf 999987650215788225762899999998505977998-----3677789999999999997258-------7808995 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINV-----KKGQFLSPWEMHNILQKLHAHG-------AKDVLFC 192 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~i-----Kkgq~~s~~e~~~a~eki~~~G-------n~~i~lc 192 (301) .+++-.++ .|.+++..++- |-+ .|-....+.+.+.|+|.+...| +++.++| T Consensus 78 A~EAVr~A----------------~lARE~~~t~w-IKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlpY~~~D~v~a 140 (264) T 1xm3_A 78 AEEAVRIA----------------RLAKASGLCDM-IKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLA 140 (264) T ss_dssp HHHHHHHH----------------HHHHHTTCCSS-EEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHH T ss_pred HHHHHHHH----------------HHHHHCCCCCE-EEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHH T ss_conf 99999999----------------99997449976-89995489877598847899999999978987999607898999 Q ss_pred EC------------CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCE Q ss_conf 14------------654440100000001068885-18716871177742122345321263889999999999718988 Q gi|254780669|r 193 ER------------GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAG 259 (301) Q Consensus 193 ER------------G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dG 259 (301) .| |.--|.+.=+.+..++.++.+ ...|||+|+-= |. |+-|-.|+-.|+|| T Consensus 141 krLed~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~e~~~vPvIVDAGI-------------G~----pSdAa~AMElG~Da 203 (264) T 1xm3_A 141 RKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGI-------------GS----PKDAAYAMELGADG 203 (264) T ss_dssp HHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCC-------------CS----HHHHHHHHHTTCSE T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCC-------------CC----HHHHHHHHHCCCCE T ss_conf 99997699199851340136877679899999996689888984798-------------98----88999999745889 Q ss_pred EEEEE Q ss_conf 99983 Q gi|254780669|r 260 IFLET 264 (301) Q Consensus 260 lfiE~ 264 (301) +++-| T Consensus 204 VLvNT 208 (264) T 1xm3_A 204 VLLNT 208 (264) T ss_dssp EEESH T ss_pred EEECH T ss_conf 98554 No 59 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=89.65 E-value=1.2 Score=23.82 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=60.9 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 999886652876885228899998765-0215788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -.+++.++|+++..+ +.++ .++ +-+|++-|..-.-..++++.++-+.||+|++-|+...++.|..-..+..... T Consensus 42 ~~~~~~~~~~~~~~~---~~~~--ll~~~~iD~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~ 116 (354) T 3db2_A 42 KREKFGKRYNCAGDA---TMEA--LLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354) T ss_dssp HHHHHHHHHTCCCCS---SHHH--HHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCC---CHHH--HHCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 999999981998338---9999--95699998899879778888889999978997999668643237888888899860 Q ss_pred CCC Q ss_conf 878 Q gi|254780669|r 185 GAK 187 (301) Q Consensus 185 Gn~ 187 (301) |.. T Consensus 117 ~~~ 119 (354) T 3db2_A 117 GVK 119 (354) T ss_dssp CCC T ss_pred CCC T ss_conf 776 No 60 >2vef_A Dihydropteroate synthase; antibiotic resistance, folic acid, transferase, biosynthesis, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* Probab=89.65 E-value=1.2 Score=23.81 Aligned_cols=203 Identities=18% Similarity=0.234 Sum_probs=123.5 Q ss_pred CHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH- Q ss_conf 99999999999999655339-9706601557688666322245671248889998866528768852288999987650- Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIAD- 133 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~- 133 (301) +.+.+++-++.+.+-|+++. +|+- ++-+-|.+.|+ .. -++--+..++.+++..++++--|-..++-++.+.+ T Consensus 31 ~~~~a~~~~~~mi~~GAdIIDIGge--STrPga~~is~---~e-E~~Rl~pvi~~l~~~~~~~iSIDT~~~~Va~~al~~ 104 (314) T 2vef_A 31 ALEQALQQARKLIAEGASMLDIGGE--STRPGSSYVEI---EE-EIQRVVPVIKAIRKESDVLISIDTWKSQVAEAALAA 104 (314) T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECC--C-----CHHHH---HH-HHHHHHHHHHHHHHHCCCEEEEECSCHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHCCCCEEEECCE--ECCCCCCCCCH---HH-HHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC T ss_conf 9999999999999879979998984--17999974799---99-999876799998416896499958973889999975 Q ss_pred HCCEEE-ECHHHCCCHHHHHHHHHCCCEEEEEC--------------------CCCCC---------------HHHH-HH Q ss_conf 215788-22576289999999850597799836--------------------77789---------------9999-99 Q gi|254780669|r 134 SVDILQ-IPALLCRQTDLLTAAAQTGRVINVKK--------------------GQFLS---------------PWEM-HN 176 (301) Q Consensus 134 ~vDilQ-IgA~~~rqtdLl~a~a~t~kpV~iKk--------------------gq~~s---------------~~e~-~~ 176 (301) .+||+- |-++. ..-+++..+++.+.++.+-- |+-.+ ..+| .. T Consensus 105 Ga~iINDVsg~~-~d~~m~~vva~~~~~~ilmh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~f~~~ 183 (314) T 2vef_A 105 GADLVNDITGLM-GDEKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFER 183 (314) T ss_dssp TCCEEEETTTTC-SCTTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHH T ss_pred CCCEEECCCCCC-CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 973898464243-4412688998638988998356667887764212145467887654346776652099999999998 Q ss_pred HHHHHHHCCCC-CEEEEECCCCCCC---HHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCC---CCC--CC-----CH Q ss_conf 99999725878-0899514654440---10000000106888518716871177742122345---321--26-----38 Q gi|254780669|r 177 ILQKLHAHGAK-DVLFCERGTSFGY---NTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHG---NCS--GG-----ER 242 (301) Q Consensus 177 a~eki~~~Gn~-~i~lcERG~~fgy---~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~---~~~--gG-----~r 242 (301) .++++...|.+ +=++..=|+-||. .|+ -=++++..++++++||.+-+|.=-..-.-.+ ... .. .| T Consensus 184 ~~~~l~~~GI~~~~IilDPGiGFgKt~~~nl-~ll~~l~~~~~lg~PiLvG~SRKsfig~l~~~~~~~~~~~~~~~~~~R 262 (314) T 2vef_A 184 ALARAAEAGIAPENILLDPGIGFGLTKKENL-LLLRDLDKLHQKGYPIFLGVSRKRFVINILEENGFEVNPETELGFRNR 262 (314) T ss_dssp HHHHHHHHTCCGGGEEEECCTTSSCCHHHHH-HHHHTHHHHHTTSSCBEEECSSCHHHHHHHHHTTCCCCTTSHHHHHHH T ss_pred HHHHHHHCCCCHHEEEECCCCCCCCCCCCCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 8889997799853698678768787740259-999779998737991699846058899885555433574222352320 Q ss_pred HHHHHHHHH--HHHHCCCEEEEEECCCHH Q ss_conf 899999999--997189889998369833 Q gi|254780669|r 243 QYIVPLAKA--AVAIGIAGIFLETHQDPD 269 (301) Q Consensus 243 ~~v~~la~a--a~a~G~dGlfiE~Hp~P~ 269 (301) . ..+++-+ |+..|++ ++-||.--+ T Consensus 263 ~-~~tlaa~~~a~~~Ga~--iiRVHDV~e 288 (314) T 2vef_A 263 D-TASAHVTSIAARQGVE--VVRVHDVAS 288 (314) T ss_dssp H-HHHHHHHHHHHHTTCS--EEEESCHHH T ss_pred H-HHHHHHHHHHHHCCCC--EEEECCHHH T ss_conf 2-9999999999987998--999389799 No 61 >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} Probab=87.77 E-value=1.5 Score=23.00 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=45.3 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHC---CC----------HHHHHHHHH----CCCEEEEEC--C Q ss_conf 9988665287688522889999876502-15788225762---89----------999999850----597799836--7 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLC---RQ----------TDLLTAAAQ----TGRVINVKK--G 166 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~---rq----------tdLl~a~a~----t~kpV~iKk--g 166 (301) |+++=+.-+.-++..+||.-.+-.+.+. .|.+++..+-+ .. ++++..+.+ ++.||.+-= | T Consensus 14 lr~ll~~~~~l~~~~~~D~~SAr~~e~aGf~a~~~sg~~~aa~~~G~pD~~~~~~~e~~~~~~~I~~a~~~PviaD~d~G 93 (298) T 3eoo_A 14 FRAAVAAEQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTG 93 (298) T ss_dssp HHHHHHHSSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTC T ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 99997289988952578999999999859999994489999983799997656667776666655303678868861677 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 7789999999999997258780899514 Q gi|254780669|r 167 QFLSPWEMHNILQKLHAHGAKDVLFCER 194 (301) Q Consensus 167 q~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301) + -.+.+....++.+...|.--|.+=.. T Consensus 94 y-G~~~~v~rtv~~~~~aGvagi~IEDq 120 (298) T 3eoo_A 94 W-GGAFNIARTIRSFIKAGVGAVHLEDQ 120 (298) T ss_dssp S-SSHHHHHHHHHHHHHTTCSEEEEECB T ss_pred C-CHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 7-80799999999999759967863697 No 62 >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* Probab=87.66 E-value=1.6 Score=22.95 Aligned_cols=113 Identities=11% Similarity=0.059 Sum_probs=65.1 Q ss_pred HCCEEEECH--------HHCCCH-------------------HHHHHHHH---CCCEEEEECCC------CCCHHHHHHH Q ss_conf 215788225--------762899-------------------99999850---59779983677------7899999999 Q gi|254780669|r 134 SVDILQIPA--------LLCRQT-------------------DLLTAAAQ---TGRVINVKKGQ------FLSPWEMHNI 177 (301) Q Consensus 134 ~vDilQIgA--------~~~rqt-------------------dLl~a~a~---t~kpV~iKkgq------~~s~~e~~~a 177 (301) ..|.++|-+ |++..| ++++++.+ .+.||-+|=.. ..+++|.+.. T Consensus 165 GfDGVEiH~ahGyLl~qFlSp~~N~RtD~YGGs~enR~Rf~~Eii~aIr~~vg~~~~i~~R~s~~d~~~~g~~~ee~~~~ 244 (349) T 3hgj_A 165 GFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAF 244 (349) T ss_dssp TCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHH T ss_pred CCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHH T ss_conf 98914605126799999058876898876787877888999999999999708997289967702146799877999999 Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHCCCC---CCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 999972587808995146544401000000---01068885-18716871177742122345321263889999999999 Q gi|254780669|r 178 LQKLHAHGAKDVLFCERGTSFGYNTLVTDM---RSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAV 253 (301) Q Consensus 178 ~eki~~~Gn~~i~lcERG~~fgy~~lvvD~---~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~ 253 (301) +..+...|..-+-+...+..........+- ......|+ ...||+.- ||.. -+..+..++ T Consensus 245 ~~~l~~~g~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~---------------G~i~--~~e~ae~~l 307 (349) T 3hgj_A 245 ARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAV---------------GLIT--TPEQAETLL 307 (349) T ss_dssp HHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEEC---------------SSCC--CHHHHHHHH T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCC--CHHHHHHHH T ss_conf 99998759751641256421243456676433689999998759968998---------------8939--999999999 Q ss_pred HHC-CCEEEEE Q ss_conf 718-9889998 Q gi|254780669|r 254 AIG-IAGIFLE 263 (301) Q Consensus 254 a~G-~dGlfiE 263 (301) +-| +|.+.+- T Consensus 308 ~~g~~D~V~~g 318 (349) T 3hgj_A 308 QAGSADLVLLG 318 (349) T ss_dssp HTTSCSEEEES T ss_pred HCCCCCHHHHH T ss_conf 87992115988 No 63 >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MSE; 1.80A {Campylobacter jejuni} PDB: 3ler_A* Probab=87.58 E-value=1.6 Score=22.93 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=25.1 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---CCEEEEECC Q ss_conf 99999999999999655339970660155768866632224567124888999886652---876885228 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY---GFPILTDVH 123 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~---glpv~TeV~ 123 (301) .++.+.+..+.+.+. +..++|=. -|+- -|--+-.+|-.++++.+.++. .+|++.-+- T Consensus 26 D~~~l~~~i~~l~~~----Gv~gl~v~------G~tG-E~~~Ls~~Er~~l~~~~~~~~~~~~~~vi~gv~ 85 (301) T 3m5v_A 26 DEQSYARLIKRQIEN----GIDAVVPV------GTTG-ESATLTHEEHRTCIEIAVETCKGTKVKVLAGAG 85 (301) T ss_dssp CHHHHHHHHHHHHHT----TCCEEECS------STTT-TGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECC T ss_pred CHHHHHHHHHHHHHC----CCCEEEEC------EECC-CHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 999999999999984----99989968------5213-576689999999999999983588763895577 No 64 >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* Probab=87.28 E-value=1.6 Score=22.82 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=68.7 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC--HH-------HHHHH-HHHCCEEEE---------CHHHCCCHHHHHH Q ss_conf 22245671248889998866528768852288--99-------99876-502157882---------2576289999999 Q gi|254780669|r 93 AGKRGVGLKKGREIFRDLKKKYGFPILTDVHT--EQ-------QCEAI-ADSVDILQI---------PALLCRQTDLLTA 153 (301) Q Consensus 93 ~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~--~~-------~~e~~-~~~vDilQI---------gA~~~rqtdLl~a 153 (301) .+|...|.+.-++.++++++..+.|++--|.- .. .++.+ .+.+|.|-+ +..++++.+.+.+ T Consensus 71 ~G~~n~g~~~~~~~~~~~~~~~~~pvi~SI~g~~~~~~~~~~~~~~~~~~~~~~~iElNiScPn~~~~~~~~~~~~~~~~ 150 (314) T 2e6f_A 71 MGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRT 150 (314) T ss_dssp CCCCBSCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCHHHHHH T ss_conf 67898699999997676541367771652206885407999999998642235579998215676775101038899999 Q ss_pred HHH-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 850-----597799836777899999999999972587808995146 Q gi|254780669|r 154 AAQ-----TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 154 ~a~-----t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG 195 (301) .-+ +..||.+|-+.+.+..+...+++.+...+-..++.|-.. T Consensus 151 ~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~n~ 197 (314) T 2e6f_A 151 YLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNS 197 (314) T ss_dssp HHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCC T ss_pred HHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 99998750030122115778877889999999874256426863154 No 65 >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Probab=86.97 E-value=0.92 Score=24.48 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=47.2 Q ss_pred HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 133 DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 133 ~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) +-+|++-|..-.....+++.++.+.||.|++-|+...+++|....++.....|. T Consensus 149 ~~iD~V~i~tp~~~H~~~~~~al~aGkhv~~EKP~a~~~~e~~~l~~~a~~~~~ 202 (433) T 1h6d_A 149 PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 202 (433) T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCC T ss_conf 998789990987999999999998799199957841233323202466765240 No 66 >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* Probab=86.88 E-value=1.7 Score=22.67 Aligned_cols=151 Identities=16% Similarity=0.221 Sum_probs=75.4 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEEEC---CCHHHHHHH Q ss_conf 99999999999999655339970660155768866632224567124888999886652-87688522---889999876 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILTDV---HTEQQCEAI 131 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~TeV---~~~~~~e~~ 131 (301) +.|++.-+.+...+.. .+.+--- |+...+=.|++....+.+.+.+++ .+||.--. .+.+++... T Consensus 26 ~~e~~~avi~AAe~~~----sPvIlq~--------s~~~~~~~g~~~~~~~~~~~a~~~~~Vpv~lHLDH~~~~e~i~~a 93 (307) T 3n9r_A 26 NFEMLNAIFEAGNEEN----SPLFIQA--------SEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKA 93 (307) T ss_dssp SHHHHHHHHHHHHHHT----CCEEEEE--------EHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEEEEEECSHHHHHHH T ss_pred CHHHHHHHHHHHHHHC----CCEEEEC--------CHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH T ss_conf 9999999999999979----9989984--------876875679899999999999756998089971787999999999 Q ss_pred HH-HCC-EEEECH-----HHCCCHHHHHHH-HHCCCEEEE----------------ECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 50-215-788225-----762899999998-505977998----------------367778999999999999725878 Q gi|254780669|r 132 AD-SVD-ILQIPA-----LLCRQTDLLTAA-AQTGRVINV----------------KKGQFLSPWEMHNILQKLHAHGAK 187 (301) Q Consensus 132 ~~-~vD-ilQIgA-----~~~rqtdLl~a~-a~t~kpV~i----------------Kkgq~~s~~e~~~a~eki~~~Gn~ 187 (301) .+ ..+ |.-=++ -|.++|--+.+. .+.|..|=- +...+-+|++.. +.+..+|. T Consensus 94 i~~GftSVMiDgS~lp~eeNi~~T~~vve~Ah~~gv~VEaElG~igg~e~~~~~~~~~~~~T~Peea~---~Fv~~Tgv- 169 (307) T 3n9r_A 94 VKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAE---QFVKESQV- 169 (307) T ss_dssp HHHTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHH---HHHHHHCC- T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH---HHHHHHCC- T ss_conf 97199868860998999999999999999982539828987412157678766555321247989999---99871088- Q ss_pred CEEEEECCCCCC-CH---HHCCCCCCCHHHHH-HCCCEEE Q ss_conf 089951465444-01---00000001068885-1871687 Q gi|254780669|r 188 DVLFCERGTSFG-YN---TLVTDMRSIPIMTS-MGVPVIF 222 (301) Q Consensus 188 ~i~lcERG~~fg-y~---~lvvD~~~i~~lk~-~~~PVi~ 222 (301) +.+.+-=|+..| |. +-..|+.-+..+++ ...|.+. T Consensus 170 D~LAvaiGn~HG~yk~~~~p~ld~~~l~~I~~~~~vPLVl 209 (307) T 3n9r_A 170 DYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVL 209 (307) T ss_dssp SEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHHCSCEEE T ss_pred CEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEC T ss_conf 7342211223367778898776899999988505886554 No 67 >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Probab=86.85 E-value=1.7 Score=22.66 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=54.7 Q ss_pred HHHHHHHH-CCCEEEEEC------CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCC---CCCCHHHHH-HC Q ss_conf 99999850-597799836------77789999999999997258780899514654440100000---001068885-18 Q gi|254780669|r 149 DLLTAAAQ-TGRVINVKK------GQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTD---MRSIPIMTS-MG 217 (301) Q Consensus 149 dLl~a~a~-t~kpV~iKk------gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD---~~~i~~lk~-~~ 217 (301) ++++++.+ .+.|+.++= .-..+++|.+..+..+...|..-+-+..+..... ...... ..-....|+ .. T Consensus 199 Eii~avr~~v~~~~~vri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~ik~~~~ 277 (338) T 1z41_A 199 EIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHA-DINVFPGYQVSFAEKIREQAD 277 (338) T ss_dssp HHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCC-CCCCCTTTTHHHHHHHHHHHC T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHCC T ss_conf 9999999985467648854543457886446699999999983974000133430135-444688620789999998759 Q ss_pred CCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEE Q ss_conf 716871177742122345321263889999999999718-9889998 Q gi|254780669|r 218 VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIG-IAGIFLE 263 (301) Q Consensus 218 ~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G-~dGlfiE 263 (301) .|||.- |+-++ +..|..++.-| +|.+.+- T Consensus 278 ~pvi~~---------------G~i~~--~~~ae~~l~~g~~D~V~~g 307 (338) T 1z41_A 278 MATGAV---------------GMITD--GSMAEEILQNGRADLIFIG 307 (338) T ss_dssp CEEEEC---------------SSCCS--HHHHHHHHHTTSCSEEEEC T ss_pred CCEEEE---------------CCCCC--HHHHHHHHHCCCCCCHHHH T ss_conf 528996---------------89499--9999999987995523865 No 68 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=86.68 E-value=1.6 Score=22.91 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=53.3 Q ss_pred CCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 876885228899998765-021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 115 GFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 115 glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) +.++.++. + +.++ +-+|.+=|.+-+..++++..++.+.||+|++-|+...+.+|....++-....|. T Consensus 54 ~~~~~~~~---~--ell~~~~~D~V~I~tp~~~H~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~ 121 (315) T 3c1a_A 54 GCVIESDW---R--SVVSAPEVEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV 121 (315) T ss_dssp TCEEESST---H--HHHTCTTCCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC T ss_pred CCCCCCCH---H--HHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 79735999---9--99559999989992878887999999996132211389821114678888888764143 No 69 >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Probab=86.20 E-value=1.7 Score=22.66 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=52.3 Q ss_pred HHHHHC-CEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 866528-76885228899998765-021578822576289999999850597799836777899999999999972587 Q gi|254780669|r 110 LKKKYG-FPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 110 ~k~~~g-lpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) ..++|+ .++.|+. + |.+. +-+|++-|..-+...++++.++-+.||+|++-||...+++|..-.++.....|. T Consensus 44 ~~~~~~~~~~~~~~---~--ell~~~~~D~V~I~tp~~~H~~~~~~al~~gkhV~~EKP~a~~~~e~~~l~~~a~~~~~ 117 (345) T 3f4l_A 44 QAPIYSHIHFTSDL---D--EVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGL 117 (345) T ss_dssp GSGGGTTCEEESCT---H--HHHTCTTEEEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC T ss_pred HHHHCCCCCEECCH---H--HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCC T ss_conf 99875999367999---9--99569999889995886998999999998599098434310125666543301123674 No 70 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Probab=86.19 E-value=1.9 Score=22.44 Aligned_cols=90 Identities=11% Similarity=0.111 Sum_probs=62.7 Q ss_pred HHHHHHHHHHHHHCCEEEEECC-CHHHHH-HHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH Q ss_conf 4888999886652876885228-899998-7650-215788225762899999998505977998367778999999999 Q gi|254780669|r 102 KGREIFRDLKKKYGFPILTDVH-TEQQCE-AIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNIL 178 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~TeV~-~~~~~e-~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~ 178 (301) +.++-.++..++++.+...-.- -....+ .+.+ -+|++-|..-+-...+++.++.+.||+|++-|+...+++|....+ T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD~V~I~tp~~~H~~~~~~al~~g~~v~~EKP~~~~~~e~~~l~ 135 (444) T 2ixa_A 56 YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYV 135 (444) T ss_dssp HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH T ss_conf 89999999999828963000265436699996389998899858827689999999971987774188989999999999 Q ss_pred HHHHHCCCCCEEEE Q ss_conf 99972587808995 Q gi|254780669|r 179 QKLHAHGAKDVLFC 192 (301) Q Consensus 179 eki~~~Gn~~i~lc 192 (301) +.....|- .++++ T Consensus 136 ~~~~~~~~-~~~v~ 148 (444) T 2ixa_A 136 KVSEQTGV-PLMAL 148 (444) T ss_dssp HHHHHHCC-CEEEC T ss_pred HHHHHHCC-CCEEC T ss_conf 99998399-96011 No 71 >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, GMP reductase domain, structural genomics; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Probab=84.68 E-value=1.6 Score=22.91 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=59.1 Q ss_pred HHHHH-HHHCCEEEECHHH-----CCCH----HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 99876-5021578822576-----2899----999998505977998367778999999999999725878089951465 Q gi|254780669|r 127 QCEAI-ADSVDILQIPALL-----CRQT----DLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGT 196 (301) Q Consensus 127 ~~e~~-~~~vDilQIgA~~-----~rqt----dLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~ 196 (301) ..+.+ ..-+|++.|-... .... ++..-...++.||.+|.- .++++ ++.+...|..-|.+---| T Consensus 170 ~~~~~~~~g~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~vpII~~~v--~t~e~----A~~l~~aGad~I~V~g~~- 242 (393) T 2qr6_A 170 IAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGV--NDYTT----ALHMMRTGAVGIIVGGGE- 242 (393) T ss_dssp HHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCSSCEEEECC--CSHHH----HHHHHTTTCSEEEESCCS- T ss_pred HHHHHHHCCCCEEEEEECCCEEEECCCHHHHHHHHHHHHHCCCCEEEECC--CCHHH----HHHHHHCCCCEEEECCCC- T ss_conf 45568754898588830100033315046899999997416986898367--69999----999997699879984666- Q ss_pred CCCCHHH---CCCCCCCHHH----HH-------HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf 4440100---0000010688----85-------18716871177742122345321263889999999999718988999 Q gi|254780669|r 197 SFGYNTL---VTDMRSIPIM----TS-------MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFL 262 (301) Q Consensus 197 ~fgy~~l---vvD~~~i~~l----k~-------~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfi 262 (301) ..+...+ +.-+.+++.. ++ .+.|||.|---. + -.+.+ +|+++|||++|+ T Consensus 243 ~tt~~~~~~g~p~l~ai~eva~a~~~~~~~~~~~~ipVIADGGIr----------~--g~DIa-----KALAlGAdaVml 305 (393) T 2qr6_A 243 NTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIE----------N--SGDVV-----KAIACGADAVVL 305 (393) T ss_dssp CCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCC----------S--HHHHH-----HHHHHTCSEEEE T ss_pred CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC----------C--HHHHH-----HHHHCCCCEECC T ss_conf 655223377662688999999999987776346886299716988----------7--38999-----999839997202 Q ss_pred EE Q ss_conf 83 Q gi|254780669|r 263 ET 264 (301) Q Consensus 263 E~ 264 (301) =+ T Consensus 306 Gs 307 (393) T 2qr6_A 306 GS 307 (393) T ss_dssp CG T ss_pred CC T ss_conf 52 No 72 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Probab=83.80 E-value=2.3 Score=21.88 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=54.5 Q ss_pred CCEEEEECCCHHHHHHHH-HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 876885228899998765-0215788225762899999998505977998367778999999999999725878 Q gi|254780669|r 115 GFPILTDVHTEQQCEAIA-DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAK 187 (301) Q Consensus 115 glpv~TeV~~~~~~e~~~-~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~ 187 (301) +.++.++. + +.++ .-+|++-|-+-.-..++++.++.+.||+|++-|+...+++|..-.++.....|.. T Consensus 52 ~~~~~~~~---~--ell~~~~iD~V~I~tp~~~H~~~~~~al~~gkhV~~EKPla~~~~e~~~l~~~a~~~g~~ 120 (364) T 3e82_A 52 DVTVIASP---E--AAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRL 120 (364) T ss_dssp TSEEESCH---H--HHHTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCC T ss_pred CCCEECCH---H--HHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 99757999---9--995599999899828778867888899864995410287411034778999997514618 No 73 >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Probab=83.56 E-value=2.2 Score=22.01 Aligned_cols=152 Identities=17% Similarity=0.245 Sum_probs=78.1 Q ss_pred CCCCCCCHHHHHH-HHHHHH-HHCCEEEEECCCH--HH----HHHHHHH--CCEEEE----------CHHHCCCHHHHHH Q ss_conf 2245671248889-998866-5287688522889--99----9876502--157882----------2576289999999 Q gi|254780669|r 94 GKRGVGLKKGREI-FRDLKK-KYGFPILTDVHTE--QQ----CEAIADS--VDILQI----------PALLCRQTDLLTA 153 (301) Q Consensus 94 sfrG~Gle~gL~i-l~e~k~-~~glpv~TeV~~~--~~----~e~~~~~--vDilQI----------gA~~~rqtdLl~a 153 (301) ++...|++.-++- +...++ ..+.|++--|... .+ ++.++++ +|.+.+ +...++..+++.+ T Consensus 75 g~~~~g~~~~~~~~~~~~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~~~d~ielN~~cP~~~~~~~~~~~~~~~~~~ 154 (311) T 1ep3_A 75 GLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAA 154 (311) T ss_dssp CCCBCCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCCCCCCHHHHHH T ss_conf 45682178999888777775179985574156784789999999986417976673045788433302232569999999 Q ss_pred HHH-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC----------------CCHH---HCCCCCC Q ss_conf 850-----597799836777899999999999972587808995146544----------------4010---0000001 Q gi|254780669|r 154 AAQ-----TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSF----------------GYNT---LVTDMRS 209 (301) Q Consensus 154 ~a~-----t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~f----------------gy~~---lvvD~~~ 209 (301) +-+ +++|+.+|-+.... +....++.+.+.|..-+.+..+.... ++.. .-.+++. T Consensus 155 i~~~~~~~~~~p~~vkl~~~~~--~~~~~~~~~~~~g~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~sG~~~~~~~l~~ 232 (311) T 1ep3_A 155 LVKACKAVSKVPLYVKLSPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKL 232 (311) T ss_dssp HHHHHHHHCSSCEEEEECSCSS--CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHH T ss_pred HHHHHHHCCCCCEEECCCCCCC--CHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 9999985036870321586633--27999999998398779999732442211036674335667787887664267899 Q ss_pred CHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 068885-1871687117774212234532126388999999999971898899983 Q gi|254780669|r 210 IPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 210 i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) +..+++ ..+|||- .||-+..-- +...+.+|+|++++=+ T Consensus 233 v~~i~~~~~ipIIg---------------~GGI~s~~D--~~~~l~~GAd~V~ig~ 271 (311) T 1ep3_A 233 IHQVAQDVDIPIIG---------------MGGVANAQD--VLEMYMAGASAVAVGT 271 (311) T ss_dssp HHHHHTTCSSCEEE---------------CSSCCSHHH--HHHHHHHTCSEEEECT T ss_pred HHHHHHCCCCCEEE---------------ECCCCCHHH--HHHHHHCCCCEEEECH T ss_conf 99986335677797---------------689599999--9999981999999628 No 74 >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Probab=82.75 E-value=2.5 Score=21.62 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=78.8 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHH Q ss_conf 99548634999999999999999655339970660155768866632224567124888999886652876885228899 Q gi|254780669|r 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQ 126 (301) Q Consensus 47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~ 126 (301) +|-|----.|.+. +.+.+++.+..+..--+- |.++..-.+ ...+..++.-.=||-..-.+..+ T Consensus 15 LilGTgky~s~~~---~~~ai~aSGaeiVTVAlR--------R~~~~~~~~------~~~~~~~~~~~lLPNTAGc~ta~ 77 (268) T 2htm_A 15 LILGSGKYEDFGV---MREAIAAAKAEVVTVSVR--------RVELKAPGH------VGLLEALEGVRLLPNTAGARTAE 77 (268) T ss_dssp EEEECSSCSCHHH---HHHHHHHTTCSEEEEEEE--------ECC-------------CHHHHTTTSEEEEBCTTCCSHH T ss_pred EEEECCCCCCHHH---HHHHHHHHCCCEEEEEEE--------CCCCCCCCC------CCHHHCHHHEEECCCCCCCCCHH T ss_conf 0787389999999---999999859977999872--------045778887------42012312327765025777599 Q ss_pred HHHHHH----HH--CCEEE---ECHHHC---CCHHHHHHHHHCCCEEEEECCC----CCCHHHHHHHHHHHHHCCCCCEE Q ss_conf 998765----02--15788---225762---8999999985059779983677----78999999999999725878089 Q gi|254780669|r 127 QCEAIA----DS--VDILQ---IPALLC---RQTDLLTAAAQTGRVINVKKGQ----FLSPWEMHNILQKLHAHGAKDVL 190 (301) Q Consensus 127 ~~e~~~----~~--vDilQ---IgA~~~---rqtdLl~a~a~t~kpV~iKkgq----~~s~~e~~~a~eki~~~Gn~~i~ 190 (301) ++-.++ |. .|++- ||-... -++++++|+.. ++|+|+ +.+.+ ...+.++...|+.-|+ T Consensus 78 eAv~~A~laRE~~g~~~IKLEVi~D~~~L~PD~~etl~Aae~-----Lv~~GF~VlpY~~~D--~~~ak~Le~~Gc~aVM 150 (268) T 2htm_A 78 EAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAER-----LIEEDFLVLPYMGPD--LVLAKRLAALGTATVM 150 (268) T ss_dssp HHHHHHHHHHHHHCCSEEBCCCCSCTTTTCCCHHHHHHHHHH-----HHHTTCEECCEECSC--HHHHHHHHHHTCSCBE T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH-----HHHCCCEEEEECCCC--HHHHHHHHHCCCCEEE T ss_conf 999999999995298758878538854679876569999999-----985896899956878--9999999876986787 Q ss_pred EEECCCCCCCHHHCCCCCCCHHH-H-H-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 95146544401000000010688-8-5-1871687117774212234532126388999999999971898899983 Q gi|254780669|r 191 FCERGTSFGYNTLVTDMRSIPIM-T-S-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 191 lcERG~~fgy~~lvvD~~~i~~l-k-~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) ---..+ |.+.=+.+..++.+. + + ...|||+|.-= |. |+-|-.|+-.|+||+++-+ T Consensus 151 Pl~sPI--Gsg~Gi~n~~~l~i~i~~~~~~vPvivDAGI-------------G~----pSdAa~aMElG~DaVLvNT 208 (268) T 2htm_A 151 PLAAPI--GSGWGVRTRALLELFAREKASLPPVVVDAGL-------------GL----PSHAAEVMELGLDAVLVNT 208 (268) T ss_dssp EBSSST--TTCCCSTTHHHHHHHHHTTTTSSCBEEESCC-------------CS----HHHHHHHHHTTCCEEEESH T ss_pred ECHHHH--CCCCCCCCHHHHHHHHHHHCCCCCEEEECCC-------------CC----HHHHHHHHHCCCCEEEECH T ss_conf 324243--1576403887888999874577876863588-------------99----8999999974798999763 No 75 >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Probab=82.62 E-value=2.7 Score=21.43 Aligned_cols=77 Identities=10% Similarity=0.115 Sum_probs=30.6 Q ss_pred CEEEEECCCHHHHHHHHHH-CCEEEECHHHCCC-------------HHH---HHHHHH--CCCEEEEE--CCCCCCHHHH Q ss_conf 7688522889999876502-1578822576289-------------999---999850--59779983--6777899999 Q gi|254780669|r 116 FPILTDVHTEQQCEAIADS-VDILQIPALLCRQ-------------TDL---LTAAAQ--TGRVINVK--KGQFLSPWEM 174 (301) Q Consensus 116 lpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rq-------------tdL---l~a~a~--t~kpV~iK--kgq~~s~~e~ 174 (301) +-++-.++|+-.+-.+.+. .|.+++..+-+-- +++ +..+.+ ++.||.+- .|+ -++..+ T Consensus 19 ~~~~p~v~D~~SArl~e~~Gf~a~~~sg~~~a~s~~G~PD~~~~~~~e~~~~~~~I~~a~~~~PvivD~D~Gy-G~~~~v 97 (302) T 3fa4_A 19 FIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGY-GGPIMV 97 (302) T ss_dssp CEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTT-SSHHHH T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCC-CCHHHH T ss_conf 6896887889999999985999999448999844679998774679999999999983267887467334578-737899 Q ss_pred HHHHHHHHHCCCCCEEEEE Q ss_conf 9999999725878089951 Q gi|254780669|r 175 HNILQKLHAHGAKDVLFCE 193 (301) Q Consensus 175 ~~a~eki~~~Gn~~i~lcE 193 (301) ...++.+...|.--+.+=. T Consensus 98 ~rtv~~~~~aG~agi~IED 116 (302) T 3fa4_A 98 ARTTEQYSRSGVAAFHIED 116 (302) T ss_dssp HHHHHHHHHTTCCEEEECS T ss_pred HHHHHHHHHCCCCEEEECC T ss_conf 9999999975883887435 No 76 >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol- phosphate, lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Probab=81.99 E-value=2.8 Score=21.28 Aligned_cols=219 Identities=12% Similarity=0.106 Sum_probs=111.4 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC-----CCCCC-CCCCCCCHHHHHHHHHHHHHHCCEE Q ss_conf 999548634999999999999999655339-9706601557688-----66632-2245671248889998866528768 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKAN-----RSSLA-GKRGVGLKKGREIFRDLKKKYGFPI 118 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKan-----RtS~~-sfrG~Gle~gL~il~e~k~~~glpv 118 (301) .+.||== +.+...++++.+.+.|.++. +|.=|. -+.|- ++|-. --.|..+++.+++++++++++..|+ T Consensus 23 yi~aG~P---~~~~~~~~l~~l~~~G~D~iEiGiPfS--DP~aDGpvIq~a~~rAl~~g~~~~~~~~~~~~~~~~~~~~~ 97 (262) T 1rd5_A 23 YITAGDP---DLATTAEALRLLDGCGADVIELGVPCS--DPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPV 97 (262) T ss_dssp EEETTSS---CHHHHHHHHHHHHHTTCSSEEEECCCS--CCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCE T ss_pred EEECCCC---CHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 9727789---978999999999975999999678877--65556772565313243567000566766543101346760 Q ss_pred EEECCC-HHH---HHHHHH-HCCEEEECHHHCC-CHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 852288-999---987650-2157882257628-9999999850597-79983677789999999999997258780899 Q gi|254780669|r 119 LTDVHT-EQQ---CEAIAD-SVDILQIPALLCR-QTDLLTAAAQTGR-VINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 119 ~TeV~~-~~~---~e~~~~-~vDilQIgA~~~r-qtdLl~a~a~t~k-pV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) +.=-.. +-. ++..++ .+|-+=||-.--. ..++..++.+.+. +|.+=-+ .++++.+. .+.+.+..=|.+ T Consensus 98 ilm~y~n~~~~~~~~~~~~~GvdGviipDlp~ee~~~~~~~~~~~~l~~I~lvaP--tt~~~ri~---~i~~~a~gfIY~ 172 (262) T 1rd5_A 98 VLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTP--AIPEDRMK---EITKASEGFVYL 172 (262) T ss_dssp EEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECT--TSCHHHHH---HHHHHCCSCEEE T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHH---HHHCCCCCEEEE T ss_conf 3442115621677777762582044225760566778888875104340010167--77187888---763269862786 Q ss_pred -EECCCCCCCHHHCCC-CCCCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH Q ss_conf -514654440100000-0010688851-8716871177742122345321263889999999999718988999836983 Q gi|254780669|r 192 -CERGTSFGYNTLVTD-MRSIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDP 268 (301) Q Consensus 192 -cERG~~fgy~~lvvD-~~~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P 268 (301) .-.|+|-+.+.+..+ ...+..+|+. ..||++---=+ .++-+ +....+|+||+.+=++--- T Consensus 173 vs~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~-------------~~e~v----~~~~~~gADGvVVGSaiv~ 235 (262) T 1rd5_A 173 VSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGIS-------------KPEHV----KQIAQWGADGVIIGSAMVR 235 (262) T ss_dssp ECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCC-------------SHHHH----HHHHHTTCSEEEECHHHHH T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCC-------------CHHHH----HHHHHCCCCEEEECHHHHH T ss_conf 303464221221210278899987513688779992789-------------99999----9998549999998889999 Q ss_pred HHCCCCCCC-CCCHHHHHHHHHHHHH Q ss_conf 347978201-8688999999999999 Q gi|254780669|r 269 DNAPSDGPN-MINIKDLPKLLSQLLA 293 (301) Q Consensus 269 ~~AlsD~~q-~l~l~~l~~ll~~l~~ 293 (301) - +.|+.. .=.++.+++++++++. T Consensus 236 ~--i~~~~~~~~~~~~~~~~~~~lk~ 259 (262) T 1rd5_A 236 Q--LGEAASPKQGLRRLEEYARGMKN 259 (262) T ss_dssp H--HHSSSSHHHHHHHHHHHHHHHHH T ss_pred H--HHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9--99758888999999999999998 No 77 >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 Probab=80.97 E-value=3.1 Score=21.05 Aligned_cols=177 Identities=14% Similarity=0.274 Sum_probs=87.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECC---CHHHHHHHH Q ss_conf 99999999999999655339970660155768866632224567124888999886652876885228---899998765 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVH---TEQQCEAIA 132 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~---~~~~~e~~~ 132 (301) +.|++.-+.+ .......+.|.-- |+....-.|++.-..+++.+.+++++||.--.= +.+++.... T Consensus 27 ~~e~~~avi~----AAe~~~sPvIlq~--------~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHlDH~~~~e~i~~ai 94 (286) T 1gvf_A 27 NAETIQAILE----VCSEMRSPVILAG--------TPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKV 94 (286) T ss_dssp SHHHHHHHHH----HHHHHTCCCEEEE--------CTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHH T ss_pred CHHHHHHHHH----HHHHHCCCEEEEC--------CHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH T ss_conf 9999999999----9999699989986--------777885678999999999998736998898765368878999986 Q ss_pred H-HCCEEEE-CH-----HHCCCH-HHHHHHHHCCCEEE----------------EECCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 0-2157882-25-----762899-99999850597799----------------83677789999999999997258780 Q gi|254780669|r 133 D-SVDILQI-PA-----LLCRQT-DLLTAAAQTGRVIN----------------VKKGQFLSPWEMHNILQKLHAHGAKD 188 (301) Q Consensus 133 ~-~vDilQI-gA-----~~~rqt-dLl~a~a~t~kpV~----------------iKkgq~~s~~e~~~a~eki~~~Gn~~ 188 (301) + ..+=+=| ++ -|.+.| +.++-+...|.+|= -....+-+|++ |.+.+..+|. + T Consensus 95 ~~GftSVMiD~S~l~~eeNi~~Tk~vv~~ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~Pee---a~~Fv~~Tgv-D 170 (286) T 1gvf_A 95 HAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQE---AKRFVELTGV-D 170 (286) T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHH---HHHHHHHHCC-S T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHCC-C T ss_conf 16886487648989999999999999999986424267644135677777665542135899999---9999998788-8 Q ss_pred EEEEECCCCCC-CHH-HCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 89951465444-010-0000001068885-1871687117774212234532126388999999999971898899983 Q gi|254780669|r 189 VLFCERGTSFG-YNT-LVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 189 i~lcERG~~fg-y~~-lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) .+..-=|+..| |.. -..|+.-+..+++ ...|.++ | |+ ||=-. ..-+.|+..|+.=+=+-| T Consensus 171 ~LAvaiGt~HG~y~~~p~L~~~~l~~I~~~~~vPLVL---H-----Gg----SG~p~----e~i~~ai~~Gi~KiNi~T 233 (286) T 1gvf_A 171 SLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVL---H-----GA----SDVPD----EFVRRTIELGVTKVNVAT 233 (286) T ss_dssp EEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEE---C-----CC----TTCCH----HHHHHHHHTTEEEEEECH T ss_pred EEHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEE---E-----CC----CCCCH----HHHHHHHHCCEEEEEECC T ss_conf 2315526656665899854303566765246998674---5-----89----99976----899999976928999572 No 78 >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 Probab=80.97 E-value=3.1 Score=21.05 Aligned_cols=184 Identities=17% Similarity=0.259 Sum_probs=114.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCHHHHHHHHH-HCCE Q ss_conf 999999999655339970660155768866632224567124888999886652876885--2288999987650-2157 Q gi|254780669|r 61 FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DVHTEQQCEAIAD-SVDI 137 (301) Q Consensus 61 ~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV~~~~~~e~~~~-~vDi 137 (301) .+.|+.+.+.+.+.. .+.-- +. + ++ +-..-++.++++.+++.+|+.. -|...++++.+.+ .+|- T Consensus 36 ~~~a~~~~~~g~d~i--~ivDl--~~---~-----~~-~~~~~~~~i~~i~~~~~~pi~~gGGirs~~~~~~~l~~G~~r 102 (253) T 1h5y_A 36 VEMAVRYEEEGADEI--AILDI--TA---A-----PE-GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADK 102 (253) T ss_dssp HHHHHHHHHTTCSCE--EEEEC--CC---C-----TT-THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSE T ss_pred HHHHHHHHHCCCCEE--EEEEC--CC---C-----CC-CCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCE T ss_conf 999999998699989--99851--05---5-----23-475289999999974498569835511177677888648988 Q ss_pred EEECHHHCCCHHHHHHHHHC---CCE---EEEECC--------------CCCCHHHHHHHHHHHHHCCCCCEEEEEC--- Q ss_conf 88225762899999998505---977---998367--------------7789999999999997258780899514--- Q gi|254780669|r 138 LQIPALLCRQTDLLTAAAQT---GRV---INVKKG--------------QFLSPWEMHNILQKLHAHGAKDVLFCER--- 194 (301) Q Consensus 138 lQIgA~~~rqtdLl~a~a~t---~kp---V~iKkg--------------q~~s~~e~~~a~eki~~~Gn~~i~lcER--- 194 (301) +=+++....+.+++.++++. .+. +-+|++ ...++.+|. +++.+.|...++++.- T Consensus 103 vii~s~~~~~~~~~~~~~~~~g~~~iv~siD~~~~~~~~~v~~~g~~~~~~~~~~~~~---~~~~~~g~~eii~tdI~~d 179 (253) T 1h5y_A 103 VSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWA---KEVEELGAGEILLTSIDRD 179 (253) T ss_dssp EEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHH---HHHHHHTCSEEEEEETTTT T ss_pred EECCCCCEECCHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHH---HHHHHCCCCEEEEEEECCC T ss_conf 9538603438647799998769952999999998599579999499437897899999---9998579998999745147 Q ss_pred CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCC Q ss_conf 654440100000001068885-1871687117774212234532126388999999999971898899983698334797 Q gi|254780669|r 195 GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPS 273 (301) Q Consensus 195 G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~Als 273 (301) |+.-|++ +..+..+.+ ...|+++ +||-+.+- .+.+ ....|++|+.+=+ |+- T Consensus 180 Gt~~G~d-----~~~l~~i~~~~~~pii~---------------~GGv~~~~-dl~~-l~~~g~~gvivgs------al~ 231 (253) T 1h5y_A 180 GTGLGYD-----VELIRRVADSVRIPVIA---------------SGGAGRVE-HFYE-AAAAGADAVLAAS------LFH 231 (253) T ss_dssp TTCSCCC-----HHHHHHHHHHCSSCEEE---------------ESCCCSHH-HHHH-HHHTTCSEEEESH------HHH T ss_pred CCCCCCC-----HHHHHHHHHHCCCCEEE---------------ECCCCCHH-HHHH-HHHCCCCEEEEHH------HHH T ss_conf 8768768-----89999999856998899---------------75999999-9999-9978996898856------878 Q ss_pred CCCCCCCHHHHHHHHHH Q ss_conf 82018688999999999 Q gi|254780669|r 274 DGPNMINIKDLPKLLSQ 290 (301) Q Consensus 274 D~~q~l~l~~l~~ll~~ 290 (301) ...+++.++++.+.+ T Consensus 232 --~~~~~~~~~k~~l~~ 246 (253) T 1h5y_A 232 --FRVLSIAQVKRYLKE 246 (253) T ss_dssp --TTSSCHHHHHHHHHH T ss_pred --CCCCCHHHHHHHHHH T ss_conf --599999999999998 No 79 >1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} SCOP: c.1.10.1 Probab=80.18 E-value=3.2 Score=20.88 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=51.5 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCH Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665287688522889 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTE 125 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~ 125 (301) .+|+| |+-.|-+.+.+.|+..++.|.+.. .+.=| +.|+ ++.++-.+.++++.+..++||+- T Consensus 85 ~vi~g-v~~~s~~~~i~~a~~a~~~Gad~i--~v~~P----------~~~~-~~~~~i~~~~~~ia~~~~~pi~i----- 145 (303) T 1xxx_A 85 RVIAG-AGTYDTAHSIRLAKACAAEGAHGL--LVVTP----------YYSK-PPQRGLQAHFTAVADATELPMLL----- 145 (303) T ss_dssp EEEEE-CCCSCHHHHHHHHHHHHHHTCSEE--EEECC----------CSSC-CCHHHHHHHHHHHHTTCSSCEEE----- T ss_pred CEEEE-CCCCCHHHHHHHHHHHHHHCCCEE--EEECC----------CCCC-CCHHHHHHHHHHHHHHCCCCEEE----- T ss_conf 48984-576668999999999997169869--99457----------5789-89999999999999716998899----- Q ss_pred HHHHHHHHHCCEEEECHHH--CCCHHHHHHHHHCCCEEEEECC Q ss_conf 9998765021578822576--2899999998505977998367 Q gi|254780669|r 126 QQCEAIADSVDILQIPALL--CRQTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 126 ~~~e~~~~~vDilQIgA~~--~rqtdLl~a~a~t~kpV~iKkg 166 (301) .+.|.+. .-..+++.++++....+-+|.. T Consensus 146 ------------yn~P~~~g~~~s~~~~~~L~~~~~v~giK~s 176 (303) T 1xxx_A 146 ------------YDIPGRSAVPIEPDTIRALASHPNIVGVKDA 176 (303) T ss_dssp ------------EECHHHHSSCCCHHHHHHHHTSTTEEEEEEC T ss_pred ------------EECCCCCCCCCCHHHHHHHCCCCCEEECCCC T ss_conf ------------9787535777698999996569995124567 No 80 >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} Probab=79.94 E-value=3.3 Score=20.83 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=62.7 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) ..+|+|-.+ .|.+.+.+.|+..++.|.+.. +.-| |+.+ .+..++-.++++++.+..++|++-= T Consensus 70 ~~vi~gv~~-~~~~~ai~~a~~a~~~G~d~i---~~~~---------P~~~-~~~~~~~~~~f~~i~~a~~iPi~lY--- 132 (297) T 2rfg_A 70 VPVIAGAGS-NNPVEAVRYAQHAQQAGADAV---LCVA---------GYYN-RPSQEGLYQHFKMVHDAIDIPIIVY--- 132 (297) T ss_dssp SCBEEECCC-SSHHHHHHHHHHHHHHTCSEE---EECC---------CTTT-CCCHHHHHHHHHHHHHHCSSCEEEE--- T ss_pred CEEEEECCC-HHHHHHHHHHHHHHHHCCCEE---ECCC---------CCCC-CCCHHHHHHHHHHHHHHCCCCEEEE--- T ss_conf 709996886-019999999999998099989---7068---------8788-9899999999999998679978999--- Q ss_pred HHHHHHHHHHCCEEEECHHHC--CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 999987650215788225762--89999999850597799836777899999999999972587808995 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLC--RQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~--rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) +.|.+.- -..+++..+++....|-+|..-....+ +. ..+...+..-.++| T Consensus 133 --------------n~P~~~g~~l~~~~~~~L~~~~nivg~K~~~~~~~~-~~---~~~~~~~~~~~~~~ 184 (297) T 2rfg_A 133 --------------NIPPRAVVDIKPETMARLAALPRIVGVKDATTDLAR-IS---RERMLINKPFSFLS 184 (297) T ss_dssp --------------ECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCTTH-HH---HHHTTCCSCCEEEE T ss_pred --------------ECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCHHH-HH---HHHHHCCCCCEEEE T ss_conf --------------787414778999999998518998987068885889-99---99874168855983 No 81 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=78.80 E-value=3.6 Score=20.60 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=78.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CEEEE-ECCCHHHHHHH Q ss_conf 49999999999999996553399706601557688666322245671248889998866528-76885-22889999876 Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYG-FPILT-DVHTEQQCEAI 131 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~g-lpv~T-eV~~~~~~e~~ 131 (301) +++.+++..+|+.|.+.|.+.. =-.+|.+ .+++.+++++++|+ +-+-. -|++.+|++.+ T Consensus 34 ~~~~~~a~~~a~al~~~Gi~~i----------------Eitl~tp---~a~e~i~~l~~~~p~~~iGaGTV~~~~~~~~a 94 (225) T 1mxs_A 34 IAREEDILPLADALAAGGIRTL----------------EVTLRSQ---HGLKAIQVLREQRPELCVGAGTVLDRSMFAAV 94 (225) T ss_dssp CSCGGGHHHHHHHHHHTTCCEE----------------EEESSST---HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEE----------------EEECCCC---HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH T ss_conf 5999999999999998799889----------------9958994---09999999997499707865303679999999 Q ss_pred HH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 50-2157882257628999999985059779983677789999999999997258780899 Q gi|254780669|r 132 AD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 132 ~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) .+ .++.+=-|. -+.++++++.+.+.|+. +=-+||.|...|.+ .|.+-+-+ T Consensus 95 ~~aGa~FivsP~---~~~~v~~~a~~~~i~~i---PGv~TpsEi~~A~~----~G~~~vK~ 145 (225) T 1mxs_A 95 EAAGAQFVVTPG---ITEDILEAGVDSEIPLL---PGISTPSEIMMGYA----LGYRRFKL 145 (225) T ss_dssp HHHTCSSEECSS---CCHHHHHHHHHCSSCEE---CEECSHHHHHHHHT----TTCCEEEE T ss_pred HHCCCCEEECCC---CCHHHHHHHHHCCCCCC---CCCCCHHHHHHHHH----CCCCEEEE T ss_conf 977998998898---95999999986599725---78699899999998----69981877 No 82 >1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A Probab=78.76 E-value=3.6 Score=20.59 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=89.0 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCHHHHHHHHH-HCCEEE-ECHHHCCC--HHHHHHHHHCCCEEE Q ss_conf 66632224567124888999886652876885--2288999987650-215788-22576289--999999850597799 Q gi|254780669|r 89 RSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DVHTEQQCEAIAD-SVDILQ-IPALLCRQ--TDLLTAAAQTGRVIN 162 (301) Q Consensus 89 RtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV~~~~~~e~~~~-~vDilQ-IgA~~~rq--tdLl~a~a~t~kpV~ 162 (301) =|-+..|.|. ++.|.++++.+.+||+- =|-++.|+..... .+|.+- |-+.+.+. .+|+..+-+.|--++ T Consensus 82 lTe~~~F~Gs-----~~dL~~v~~~v~~PiLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~L 156 (247) T 1a53_A 82 LTEEKYFNGS-----YETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPL 156 (247) T ss_dssp ECCCTTTCCC-----HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCE T ss_pred ECCCCCCCCC-----HHHHHHHHHHHCCCEEHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEE T ss_conf 6788888999-----99999999860686421012388999999999466645688874128889999999998498757 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHH---CCCEEECHHHHHHHCCCCCCCCC Q ss_conf 836777899999999999972587808995146544401000000010688851---87168711777421223453212 Q gi|254780669|r 163 VKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSM---GVPVIFDASHSVQQPGIHGNCSG 239 (301) Q Consensus 163 iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~---~~PVi~D~SHs~q~p~~~~~~~g 239 (301) +-=+ +.+|+..| ...|.+-|.+--|.- .++-+|......+... +..+| +- +|. T Consensus 157 vEvh---~~~El~~a----~~~~a~iIGINnRnL----~t~~vd~~~~~~l~~~ip~~~~~I---aE--------SGI-- 212 (247) T 1a53_A 157 IEIN---DENDLDIA----LRIGARFIGINSRDL----ETLEINKENQRKLISMIPSNVVKV---AE--------SGI-- 212 (247) T ss_dssp EEEC---SHHHHHHH----HHTTCSEEEEESBCT----TTCCBCHHHHHHHHHHSCTTSEEE---EE--------SCC-- T ss_pred EEEC---CHHHHHHH----HHCCCCEEEEECCCH----HHCCCCHHHHHHHHHHCCCCCEEE---EE--------CCC-- T ss_conf 7737---99999999----818998498714114----320447678999996388898799---96--------479-- Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 63889999999999718988999836 Q gi|254780669|r 240 GERQYIVPLAKAAVAIGIAGIFLETH 265 (301) Q Consensus 240 G~r~~v~~la~aa~a~G~dGlfiE~H 265 (301) ..++- ++....+|+||+.|-.+ T Consensus 213 ~t~ed----~~~l~~~G~davLIGes 234 (247) T 1a53_A 213 SERNE----IEELRKLGVNAFLIGSS 234 (247) T ss_dssp CCHHH----HHHHHHTTCCEEEECHH T ss_pred CCHHH----HHHHHHCCCCEEEECHH T ss_conf 99999----99999779999998988 No 83 >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Probab=78.69 E-value=3.6 Score=20.58 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=30.7 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEE Q ss_conf 699954863499999999999999965533997066015576886663222456712488899988665287688 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPIL 119 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~ 119 (301) ..+|+|- +-.|-+++.+.|+..++.|.+ +.+.-| |+.+ .+..++-.++++++.+..++|++ T Consensus 70 ~~vi~g~-~~~s~~~ai~~a~~a~~~Gad---~v~v~~---------P~~~-~~~~~~i~~~~~~ia~~~~~pi~ 130 (289) T 2yxg_A 70 VQVIAGA-GSNCTEEAIELSVFAEDVGAD---AVLSIT---------PYYN-KPTQEGLRKHFGKVAESINLPIV 130 (289) T ss_dssp SEEEEEC-CCSSHHHHHHHHHHHHHHTCS---EEEEEC---------CCSS-CCCHHHHHHHHHHHHHHCSSCEE T ss_pred CCEEEEC-CCCCHHHHHHHHHHHHHCCCC---EEEECC---------CCCC-CCCHHHHHHHHHHHHHCCCCCEE T ss_conf 6089736-874599999999999977999---999889---------8788-99999999999999964799889 No 84 >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Probab=78.36 E-value=3.7 Score=20.52 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=98.1 Q ss_pred CCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHH Q ss_conf 17706835787727976997069995486349999999999999996553399706601557688666322245671248 Q gi|254780669|r 24 TNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKG 103 (301) Q Consensus 24 ~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~g 103 (301) .++...|++ .+|.. + +|-|----.|.+. +.+.+...+.++..- +-. |....+..+ . T Consensus 7 ~d~~l~I~g----~~f~S--R--L~lGTgky~s~~~---~~~ai~aSgaeivTv-----AlR---R~~~~~~~~-----~ 62 (265) T 1wv2_A 7 TDTPFVIAG----RTYGS--R--LLVGTGKYKDLDE---TRRAIEASGAEIVTV-----AVR---RTNIGQNPD-----E 62 (265) T ss_dssp --CCEEETT----EEESC--C--EEECCSCSSSHHH---HHHHHHHSCCSEEEE-----EGG---GCCC----------- T ss_pred CCCCEEECC----EEEEC--C--EEEECCCCCCHHH---HHHHHHHHCCCEEEE-----EEE---ECCCCCCCC-----C T ss_conf 999869999----99785--2--6887389999999---999999859987999-----974---025667887-----1 Q ss_pred HHHHHHHHH--HHCCEEEEECCCHHHHHHH----HHH---CCEEEECHHHCCC------HHHHHHHHHCCCEEEEECCC- Q ss_conf 889998866--5287688522889999876----502---1578822576289------99999985059779983677- Q gi|254780669|r 104 REIFRDLKK--KYGFPILTDVHTEQQCEAI----ADS---VDILQIPALLCRQ------TDLLTAAAQTGRVINVKKGQ- 167 (301) Q Consensus 104 L~il~e~k~--~~glpv~TeV~~~~~~e~~----~~~---vDilQIgA~~~rq------tdLl~a~a~t~kpV~iKkgq- 167 (301) ..++..++. -.-||-+.-.+..+++-.+ -|. -+++.+.---... .++++|+- +++|.|+ T Consensus 63 ~~l~d~l~~~~~~~LPNTAGc~tAeEAv~~A~lARE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~-----~Lvk~gF~ 137 (265) T 1wv2_A 63 PNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAE-----QLVKDGFD 137 (265) T ss_dssp -------CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHH-----HHHTTTCE T ss_pred HHHHHHHCCCCEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH-----HHHHCCCE T ss_conf 2477763657838886668854699999999999986489856999874698778977889999999-----99978977 Q ss_pred ---CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHH Q ss_conf ---789999999999997258780899514654440100000001068885-1871687117774212234532126388 Q gi|254780669|r 168 ---FLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQ 243 (301) Q Consensus 168 ---~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~ 243 (301) +.+.+ ...+.++...|+.-|+ --|.-+|.+.=+.+..++.++.+ ...|||+|.-= |. T Consensus 138 VlpY~~dD--~~~ak~L~d~Gc~avM--PlgsPIGSg~Gi~n~~~l~~i~~~~~vpviVDAGI-------------G~-- 198 (265) T 1wv2_A 138 VMVYTSDD--PIIARQLAEIGCIAVM--PLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGV-------------GT-- 198 (265) T ss_dssp EEEEECSC--HHHHHHHHHSCCSEEE--ECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCC-------------CS-- T ss_pred EEECCCCC--HHHHHHHHHCCCEEEC--CCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC-------------CC-- T ss_conf 96247846--9999998754963754--48321011246367789999985389529974688-------------97-- Q ss_pred HHHHHHHHHHHHCCCEEEEEE Q ss_conf 999999999971898899983 Q gi|254780669|r 244 YIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 244 ~v~~la~aa~a~G~dGlfiE~ 264 (301) |+-|--|+-.|+||+|+-+ T Consensus 199 --pSdAa~aMElG~DaVLvNT 217 (265) T 1wv2_A 199 --ASDAAIAMELGCEAVLMNT 217 (265) T ss_dssp --HHHHHHHHHHTCSEEEESH T ss_pred --HHHHHHHHHCCCCEEEECH T ss_conf --8899999971488898532 No 85 >3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Probab=78.10 E-value=3.7 Score=20.47 Aligned_cols=62 Identities=11% Similarity=-0.075 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCEEEEECC Q ss_conf 9999999999996553399706601557688666322245----67124888999886652876885228 Q gi|254780669|r 58 DHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRG----VGLKKGREIFRDLKKKYGFPILTDVH 123 (301) Q Consensus 58 e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG----~Gle~gL~il~e~k~~~glpv~TeV~ 123 (301) +.+.+..+.+++.|.+..|=.+|=- -+- ..|..-+.+ +-.++.+.++++++ +.||.|+-.-| T Consensus 53 ~~a~~~l~~m~~~G~N~Vrl~~~~~-q~~--~~s~~~~~~~~~t~~de~v~~~i~~Ak-~~GLkV~L~P~ 118 (343) T 3civ_A 53 DEARASMRALAEQPFNWVTLAFAGL-MEH--PGDPAIAYGPPVTVSDDEIASMAELAH-ALGLKVCLKPT 118 (343) T ss_dssp HHHHHHHHHHHHSSCSEEEEEEEEE-ESS--TTCCCCBCSTTTBCCHHHHHHHHHHHH-HTTCEEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEEEECC-CCC--CCCCCEECCCCCCCCHHHHHHHHHHHH-HCCCEEEEEEE T ss_conf 8999999999985998899961003-589--988830036899848899999999999-76987998624 No 86 >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Probab=77.98 E-value=3.8 Score=20.44 Aligned_cols=145 Identities=11% Similarity=0.143 Sum_probs=81.5 Q ss_pred CCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-ECCCCCC---C---C--------CCCCCCCCCC Q ss_conf 7279769970699954863499999999999999965533997066-0155768---8---6--------6632224567 Q gi|254780669|r 35 NQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVY-KSSFDKA---N---R--------SSLAGKRGVG 99 (301) Q Consensus 35 ~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~if-K~sfdKa---n---R--------tS~~sfrG~G 99 (301) .+++|-| |+.+-|||+. .+.|++.. + .....|++- |..+.++ | | -.-.+|.-+| T Consensus 43 ~Gl~~~n--Pi~~AaG~~~-~~~e~~~~----~----~~~g~Gavv~ktvt~~p~~GNp~PR~~~~~~~~iN~~G~~n~G 111 (345) T 3oix_A 43 GSFDFDN--CLMNAAGVYC-MTREELAA----I----DHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLG 111 (345) T ss_dssp TTEEESC--SEEECTTSSC-SSHHHHHH----H----HTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSC T ss_pred CCEECCC--CCEECCCCCC-CCHHHHHH----H----HHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCC T ss_conf 9997489--8686667888-99899986----6----7639986996366788657999876455631456404799998 Q ss_pred CHHHHHHHHHHHHHH-CCEEEEECC--CHHHHHH------HHHHCCEEEECHHHC----------CCHH----HHHHHHH Q ss_conf 124888999886652-876885228--8999987------650215788225762----------8999----9999850 Q gi|254780669|r 100 LKKGREIFRDLKKKY-GFPILTDVH--TEQQCEA------IADSVDILQIPALLC----------RQTD----LLTAAAQ 156 (301) Q Consensus 100 le~gL~il~e~k~~~-glpv~TeV~--~~~~~e~------~~~~vDilQIgA~~~----------rqtd----Ll~a~a~ 156 (301) .+.-++.+++.++.. ..|++--+. .+++... .+.++|.+-|- ..| ++.+ ++.++.+ T Consensus 112 ~~~~~~~l~~~~~~~~~~~vi~si~g~~~~e~~~~~~~~~~~~~ad~iElN-iScPNt~g~~~~~~d~~~~~~il~~v~~ 190 (345) T 3oix_A 112 INYYLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELN-LSCPNVPGXPQIAYDFETTDQILSEVFT 190 (345) T ss_dssp HHHHHHHHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEE-CSCCCSTTCCCGGGCHHHHHHHHHHHTT T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 452100013544134545611144569857888999998525878889997-3688877841001488999999999887 Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf -59779983677789999999999997258780899 Q gi|254780669|r 157 -TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 157 -t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) +.+||.+|-+.+....++..+++.....|-.-+.. T Consensus 191 ~~~~Pv~vKlsp~~~~~~~~~~~~~~~~~~~~~i~~ 226 (345) T 3oix_A 191 YFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNC 226 (345) T ss_dssp TCCSCEEEEECCCCCHHHHHHHHHHHTTSCCSEEEE T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE T ss_conf 630110113677787677999999967764210111 No 87 >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Probab=76.96 E-value=4 Score=20.26 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=48.4 Q ss_pred HHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 50215788225762899999998505977998367778999999999999725878 Q gi|254780669|r 132 ADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAK 187 (301) Q Consensus 132 ~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~ 187 (301) .+-+|++-|..-+-..+++..++.+.++.|++-||...+++|....++.....+.. T Consensus 71 ~~~iD~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~~~~~~~~ 126 (318) T 3oa2_A 71 ATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKR 126 (318) T ss_dssp TTSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCC T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCE T ss_conf 89960999859849999999999975991999457734303667899876515970 No 88 >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} Probab=76.83 E-value=4.1 Score=20.24 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=67.7 Q ss_pred HHHHHHH--CCEEEEECCCHHHH-HHHHHHC-----CEEEECHHHCCCHHHHHHHHHCC-CEEEEE---CCCCCCHHHHH Q ss_conf 9886652--87688522889999-8765021-----57882257628999999985059-779983---67778999999 Q gi|254780669|r 108 RDLKKKY--GFPILTDVHTEQQC-EAIADSV-----DILQIPALLCRQTDLLTAAAQTG-RVINVK---KGQFLSPWEMH 175 (301) Q Consensus 108 ~e~k~~~--glpv~TeV~~~~~~-e~~~~~v-----DilQIgA~~~rqtdLl~a~a~t~-kpV~iK---kgq~~s~~e~~ 175 (301) +++.+.| +-.-+.=+..-..+ ..+.... |-+=+|++.|-.+ +.++-..| +||.+. +...++++++. T Consensus 43 ~~~a~~~~~~~~~~~~~~sgt~al~~al~~l~~~~gdeVi~p~~t~~a~--~~ai~~~G~~pvfvDid~~~~~id~~~l~ 120 (377) T 3ju7_A 43 QTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPAT--PLAAIWCGLEPYFIDISIDDWYMDKTVLW 120 (377) T ss_dssp HHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTTCSBCHHHHH T ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHH--HHHHHHCCCEEEEEECCCCCCCCCHHHHH T ss_conf 9999975899998999155999999999976989839999899853987--99999869979999446886772889999 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHH Q ss_conf 999999725878089951465444010000000106888518716871177742 Q gi|254780669|r 176 NILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQ 229 (301) Q Consensus 176 ~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q 229 (301) .++++.. +++.+.---..||+ ..|+..+..+.+.+.+||.|+.||.. T Consensus 121 ~~I~~~t----~~~~~vi~~~~~G~---~~d~~~i~~i~k~~i~vIeD~a~a~g 167 (377) T 3ju7_A 121 DKIEELK----EEVAIVVPYATFGS---WMNLEEYEELEKKGVPVVVDAAPGFG 167 (377) T ss_dssp HHHHHHG----GGEEEECCBCGGGB---CCCCHHHHHHHHTTCCBEEECTTCTT T ss_pred HHHHHCC----CCEEEEEECCCCCC---CHHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 9986068----73489982576788---12189999874346268743434567 No 89 >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Probab=76.82 E-value=3.2 Score=20.96 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=51.4 Q ss_pred CCEEEECHHHCCCHHHHHHHHHCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCHHHCCCCCCCH Q ss_conf 1578822576289999999850597799836--777899999999999972587-8089951465444010000000106 Q gi|254780669|r 135 VDILQIPALLCRQTDLLTAAAQTGRVINVKK--GQFLSPWEMHNILQKLHAHGA-KDVLFCERGTSFGYNTLVTDMRSIP 211 (301) Q Consensus 135 vDilQIgA~~~rqtdLl~a~a~t~kpV~iKk--gq~~s~~e~~~a~eki~~~Gn-~~i~lcERG~~fgy~~lvvD~~~i~ 211 (301) |-++--|+|-.+=.++++..+. .++.++- +...++++...+.+ .... +-|.+|+=-+++|.- .|+..+. T Consensus 86 Vlv~~~g~f~~~~~~~a~~~G~--~v~~i~~~~~~~id~~~le~al~---~~~~~k~V~l~~~~t~tG~~---~pi~~i~ 157 (392) T 2z9v_A 86 VLNLASGVYGKGFGYWAKRYSP--HLLEIEVPYNEAIDPQAVADMLK---AHPEITVVSVCHHDTPSGTI---NPIDAIG 157 (392) T ss_dssp EEEEESSHHHHHHHHHHHHHCS--CEEEEECCTTSCCCHHHHHHHHH---HCTTCCEEEEESEEGGGTEE---CCHHHHH T ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCHHHHHHHHH---CCCCCEEEEEECCCCCCCEE---CCHHHHH T ss_conf 9995376178999999997198--47995168888789999999971---59995399997777667444---3678875 Q ss_pred HH-HHHCCCEEECHHHHH Q ss_conf 88-851871687117774 Q gi|254780669|r 212 IM-TSMGVPVIFDASHSV 228 (301) Q Consensus 212 ~l-k~~~~PVi~D~SHs~ 228 (301) .+ ++.+.++++|.+||. T Consensus 158 ~l~~~~g~~lvvDavss~ 175 (392) T 2z9v_A 158 ALVSAHGAYLIVDAVSSF 175 (392) T ss_dssp HHHHHTTCEEEEECTTTB T ss_pred HHHHHCCCEEEEEECCCC T ss_conf 567753973899603434 No 90 >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Probab=76.80 E-value=4.1 Score=20.23 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=55.2 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHHHHCCEEEEECC Q ss_conf 999548634999999999999999655339970660155768866632224567124888--999886652876885228 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGRE--IFRDLKKKYGFPILTDVH 123 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~--il~e~k~~~glpv~TeV~ 123 (301) .+|+| ++-.|-+...+.|+..++.|.+... +. .|+.++.. .++.+. +.+.+....++|++- T Consensus 94 pvi~G-v~~~st~eai~~a~~a~~~Gad~vl--v~----------pP~y~~~~-~~~~~~~~~~~~i~~a~~lPi~l--- 156 (344) T 2hmc_A 94 PVIVG-TGAVNTASAVAHAVHAQKVGAKGLM--VI----------PRVLSRGS-VIAAQKAHFKAILSAAPEIPAVI--- 156 (344) T ss_dssp CEEEE-CCCSSHHHHHHHHHHHHHHTCSEEE--EC----------CCCSSSTT-CHHHHHHHHHHHHHHSTTSCEEE--- T ss_pred CEEEE-CCCCCHHHHHHHHHHHHHCCCCEEE--CC----------CCCCCCCC-CHHHHHHHHHHHHHCCCCCCEEE--- T ss_conf 68996-7878899999999999983997454--15----------86355664-11468999888872389986688--- Q ss_pred CHHHHHHHHHHCCEEEECHHHCCC--HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 899998765021578822576289--999999850597799836777899999999999972587808995 Q gi|254780669|r 124 TEQQCEAIADSVDILQIPALLCRQ--TDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 124 ~~~~~e~~~~~vDilQIgA~~~rq--tdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) .++|.+--.. .++++.+++....+-||-. -...++....+.+...+.+=.++| T Consensus 157 --------------Yn~P~~~~~~~~~~~~~~l~~~pnivgiKds--~g~~~~~~~~~~~~~~~~~~~v~~ 211 (344) T 2hmc_A 157 --------------YNSPYYGFATRADLFFALRAEHKNLVGFKEF--GGPADMRYAAENITSRDDEVTLMI 211 (344) T ss_dssp --------------EEBGGGTBCCCHHHHHHHHHHCTTEEEEEEC--SCHHHHHHHHHHTSCSSSSCEEEE T ss_pred --------------ECCCCCCCCCCHHHHHHHHCCCCCEEEEEEC--CCCHHHHHHHHHHHHCCCCEEEEE T ss_conf --------------5178766667779999997258997999978--886256678999971687259973 No 91 >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Probab=76.74 E-value=4.1 Score=20.22 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=48.9 Q ss_pred HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 021578822576289999999850597799836777899999999999972587808995 Q gi|254780669|r 133 DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 133 ~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) .-+|.+-|.+-+-...++..++.+.||+|++-|+...+++|....++.....|.. ++++ T Consensus 64 ~~iDaV~I~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~ea~~l~~~a~~~~~~-~~v~ 122 (362) T 3fhl_A 64 PEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLM-LSVY 122 (362) T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCC-EEEE T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHHHHHHHHHCCCC-EEEE T ss_conf 9998899948947889999999974997510287531222111577887632522-1110 No 92 >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Probab=76.74 E-value=4.1 Score=20.22 Aligned_cols=185 Identities=19% Similarity=0.253 Sum_probs=115.2 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCHHHHHHHHH-HCC Q ss_conf 9999999999655339970660155768866632224567124888999886652876885--2288999987650-215 Q gi|254780669|r 60 AFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DVHTEQQCEAIAD-SVD 136 (301) Q Consensus 60 ~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV~~~~~~e~~~~-~vD 136 (301) -.++|+.+.+.+.+. ++=--.+.+ + . +-..-+++++++.+++++|+.. =|...++++.+.+ .+| T Consensus 33 P~~~a~~~~~~g~de----i~ivDl~~~-~------~--~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~ 99 (252) T 1ka9_F 33 PVEAARAYDEAGADE----LVFLDISAT-H------E--ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGAD 99 (252) T ss_dssp HHHHHHHHHHHTCSC----EEEEECCSS-T------T--CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCS T ss_pred HHHHHHHHHHCCCCE----EEEEECCCC-C------C--CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCC T ss_conf 999999999869998----999953254-2------3--34028999999875148745773682678887899873898 Q ss_pred EEEECHHHCCCHHHHHHHHHC-C--CE---EEE-----------ECCC---CCCHHHHHHHHHHHHHCCCCCEEEEEC-- Q ss_conf 788225762899999998505-9--77---998-----------3677---789999999999997258780899514-- Q gi|254780669|r 137 ILQIPALLCRQTDLLTAAAQT-G--RV---INV-----------KKGQ---FLSPWEMHNILQKLHAHGAKDVLFCER-- 194 (301) Q Consensus 137 ilQIgA~~~rqtdLl~a~a~t-~--kp---V~i-----------Kkgq---~~s~~e~~~a~eki~~~Gn~~i~lcER-- 194 (301) -+=|++-..++.+++.++++. + .. +-+ ..++ ..++.+| ++++.+.|...++++.= T Consensus 100 kvii~S~~~~~~~~~~~~~~~~g~~~iv~~id~~~~~~~~~v~~~~~~~~t~~~~~~~---~~~~~~~g~~eiiltdi~~ 176 (252) T 1ka9_F 100 KVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEW---AVKGVELGAGEILLTSMDR 176 (252) T ss_dssp EEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHH---HHHHHHHTCCEEEEEETTT T ss_pred EEEECCHHHCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCEEECCCCHHHH---HHHHHHCCCCEEEEEEECC T ss_conf 9998842430789999999854654326899876406775899759877669779999---9999874798899986234 Q ss_pred -CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCC Q ss_conf -654440100000001068885-187168711777421223453212638899999999997189889998369833479 Q gi|254780669|r 195 -GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAP 272 (301) Q Consensus 195 -G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~Al 272 (301) |+.-|++ +.-+..+.+ ...|+|. +||-+.+- .+.+ +...|++|..+=+ |+ T Consensus 177 dGt~~G~d-----~~l~~~i~~~~~~pii~---------------sGGv~~~~-dl~~-l~~~g~~gvivg~------al 228 (252) T 1ka9_F 177 DGTKEGYD-----LRLTRMVAEAVGVPVIA---------------SGGAGRME-HFLE-AFQAGAEAALAAS------VF 228 (252) T ss_dssp TTTCSCCC-----HHHHHHHHHHCSSCEEE---------------ESCCCSHH-HHHH-HHHTTCSEEEESH------HH T ss_pred CCCCCCCC-----HHHHHHHHHHCCCCEEE---------------ECCCCCHH-HHHH-HHHCCCCEEEEEH------HH T ss_conf 57666741-----67999998516987999---------------77989999-9999-9978997999852------87 Q ss_pred CCCCCCCCHHHHHHHHHH Q ss_conf 782018688999999999 Q gi|254780669|r 273 SDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 273 sD~~q~l~l~~l~~ll~~ 290 (301) - ...+++.++.+.+++ T Consensus 229 ~--~g~i~~~~lk~~l~~ 244 (252) T 1ka9_F 229 H--FGEIPIPKLKRYLAE 244 (252) T ss_dssp H--TTSSCHHHHHHHHHH T ss_pred H--CCCCCHHHHHHHHHH T ss_conf 7--699999999999998 No 93 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* Probab=75.66 E-value=3 Score=21.08 Aligned_cols=121 Identities=17% Similarity=0.273 Sum_probs=56.8 Q ss_pred CCHHHHHHHHH-HHHHHCCEEEEE---CCCHHHHHHHHH-HCC-EEEECHH-----HCCCH-HHHHHHHHCCCEEEEE-- Q ss_conf 71248889998-866528768852---288999987650-215-7882257-----62899-9999985059779983-- Q gi|254780669|r 99 GLKKGREIFRD-LKKKYGFPILTD---VHTEQQCEAIAD-SVD-ILQIPAL-----LCRQT-DLLTAAAQTGRVINVK-- 164 (301) Q Consensus 99 Gle~gL~il~e-~k~~~glpv~Te---V~~~~~~e~~~~-~vD-ilQIgA~-----~~rqt-dLl~a~a~t~kpV~iK-- 164 (301) |.+.-..+... +.+..++||.-- -.+.+++....+ ..+ |.-=++. |.++| ++++-+...+..|=-- T Consensus 58 g~~~~~~~~~~~~~~~~~VPv~lHlDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNI~~Tk~vv~~Ah~~gv~VEaElG 137 (323) T 2isw_A 58 DMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELG 137 (323) T ss_dssp TTHHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEES T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 97889999999999759999899799988999999999718986998388233999999999999998653871899642 Q ss_pred -----------CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CH---HH--CCCCCCCHHHHH-HCCCEEEC Q ss_conf -----------67778999999999999725878089951465444-01---00--000001068885-18716871 Q gi|254780669|r 165 -----------KGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFG-YN---TL--VTDMRSIPIMTS-MGVPVIFD 223 (301) Q Consensus 165 -----------kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fg-y~---~l--vvD~~~i~~lk~-~~~PVi~D 223 (301) ...+-+|+| |.+.+..+|. +.+..==|+..| |. ++ -.|+--+...++ ...|.++- T Consensus 138 ~vgg~ed~~~~~~~~T~Pee---A~~Fv~~Tgv-D~LAvaiGn~HG~yk~~~~~~~~l~~~~l~~I~~~~~~PLVlH 210 (323) T 2isw_A 138 TLGGIEEDVQNTVQLTEPQD---AKKFVELTGV-DALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMH 210 (323) T ss_dssp CC----------CCCCCHHH---HHHHHHHHCC-SEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEEC T ss_pred ECCCCCCCCCCCCCCCCHHH---HHHHHHCCCC-CEEEECCCCCCCCCCCCCCCCHHHCHHHHHHHHHCCCCCEEEE T ss_conf 03676767655455799899---9999861188-8442010000366778788741015999998763149876841 No 94 >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase; carbon dioxide fixation, cobalamin; 2.20A {Moorella thermoacetica atcc 39073} SCOP: c.1.21.2 PDB: 2e7f_A* 2ogy_A* Probab=75.30 E-value=4.5 Score=19.97 Aligned_cols=191 Identities=10% Similarity=0.019 Sum_probs=115.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH Q ss_conf 4999999999999999655339-970660155768866632224567124888999886652876885228899998765 Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIA 132 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~ 132 (301) -++.+.+.+.|+...+.|+++. +| + -.++. ...++-.++...++...++|+.-|.-.++-++... T Consensus 21 ~~d~~~i~~~A~~mv~~GAdiIDIg----~------g~~~~----~e~e~~~~~i~~i~~~~~~piSIDT~~~ev~~aal 86 (262) T 1f6y_A 21 ERDPAPVQEWARRQEEGGARALDLN----V------GPAVQ----DKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGL 86 (262) T ss_dssp HTCHHHHHHHHHHHHHHTCSEEEEB----C------C--------CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC----C------CCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 6899999999999998799989968----9------99876----88999999999999982799512578769999999 Q ss_pred H---HCCEEEE-CHHHCCCHHHHHHHHHCCCEEEE----ECCCCCCHHHHHHHH----HHHHHCCCC-CEEEEECCCCCC Q ss_conf 0---2157882-25762899999998505977998----367778999999999----999725878-089951465444 Q gi|254780669|r 133 D---SVDILQI-PALLCRQTDLLTAAAQTGRVINV----KKGQFLSPWEMHNIL----QKLHAHGAK-DVLFCERGTSFG 199 (301) Q Consensus 133 ~---~vDilQI-gA~~~rqtdLl~a~a~t~kpV~i----Kkgq~~s~~e~~~a~----eki~~~Gn~-~i~lcERG~~fg 199 (301) + .++++-= -+.--..-.++..+.+.+-+++. .+++-.++++....+ ++..+.|-. +-++..=|+.|+ T Consensus 87 ~~~~Ga~iINDVsg~~~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~Ii~DP~i~~~ 166 (262) T 1f6y_A 87 KKCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPA 166 (262) T ss_dssp HHCSSCEEEEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCT T ss_pred HHCCCCEEEECHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC T ss_conf 87269817740510311489998988745970788547888775689999999999999988439987665626541120 Q ss_pred CH---HHCCCCCCCHHHH---HHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHCCCEEEEEECC Q ss_conf 01---0000000106888---518716871177742122345321263889999-9999997189889998369 Q gi|254780669|r 200 YN---TLVTDMRSIPIMT---SMGVPVIFDASHSVQQPGIHGNCSGGERQYIVP-LAKAAVAIGIAGIFLETHQ 266 (301) Q Consensus 200 y~---~lvvD~~~i~~lk---~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~-la~aa~a~G~dGlfiE~Hp 266 (301) -. +....+..+-.++ +.++|+.+=.|--.+- . ..|+.... .+-.|++.|.|+-++-+|. T Consensus 167 ~~~~~~~~~~le~l~~l~~~~~~g~~~l~G~S~~s~g-------~-~~R~~l~~~~l~~Ai~~Gl~aaIvr~~d 232 (262) T 1f6y_A 167 NVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNVSQN-------C-QNRPLINRTFLAMAMACGLMSAIADACD 232 (262) T ss_dssp TTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGGGTT-------C-SSHHHHHHHHHHHHHHTTCCEEEECTTC T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-------C-CCHHHHHHHHHHHHHHCCCCCEEECCCC T ss_conf 3411778999999999999753799846610455578-------8-6226879999999998589973267376 No 95 >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} SCOP: c.67.1.9 Probab=74.92 E-value=4.6 Score=19.91 Aligned_cols=106 Identities=15% Similarity=0.272 Sum_probs=65.8 Q ss_pred CCHHHHHHHHHCC-CEEEEEC---C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCC Q ss_conf 8999999985059-7799836---7--77899999999999972587808995146544401000000010688-85187 Q gi|254780669|r 146 RQTDLLTAAAQTG-RVINVKK---G--QFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGV 218 (301) Q Consensus 146 rqtdLl~a~a~t~-kpV~iKk---g--q~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~ 218 (301) -+....+++.-.| +|+.+.- + ..+++++...++++....++.-.++..-++ |.++. +-|+..|..+ ++++. T Consensus 185 ~h~S~~kai~~~G~~~~~v~~~~~~~~~~~d~~~le~~i~~~~~~~~~~~v~~t~~~-~~~g~-~~di~~I~~l~~~~~i 262 (456) T 2z67_A 185 SHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTF-FPPRN-SDDIVEIAKICENYDI 262 (456) T ss_dssp CCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSC-CTTBC-CCCHHHHHHHHHHHTC T ss_pred CHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCE-ECCHHHHHHHHHHHCC T ss_conf 439999999984991799875654855677999999999855144864899972476-79815-5489999999998499 Q ss_pred CEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 16871177742122345321263889999999999718988999836 Q gi|254780669|r 219 PVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETH 265 (301) Q Consensus 219 PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~H 265 (301) |+++|..|+.| ......... .+...|+|.+..-+| T Consensus 263 ~livD~A~g~~-----------~~~~~~~~~-~~~~~~vD~v~~S~h 297 (456) T 2z67_A 263 PHIINGAYAIQ-----------NNYYLEKLK-KAFKYRVDAVVSSSD 297 (456) T ss_dssp CEEEECTTTTT-----------CHHHHHHHH-HHHTSCCSEEEEEHH T ss_pred EEEEECCCCCC-----------CCCCCCCCC-CCCCCCCCEEEEECC T ss_conf 79996755321-----------301365565-431368878997188 No 96 >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Probab=74.37 E-value=3.1 Score=20.99 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=87.7 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCHHHHHHHHHH-CCE-EEECHHHCCC--HHHHHHHHHCCCEEE Q ss_conf 66632224567124888999886652876885--22889999876502-157-8822576289--999999850597799 Q gi|254780669|r 89 RSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DVHTEQQCEAIADS-VDI-LQIPALLCRQ--TDLLTAAAQTGRVIN 162 (301) Q Consensus 89 RtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV~~~~~~e~~~~~-vDi-lQIgA~~~rq--tdLl~a~a~t~kpV~ 162 (301) -|-+.-|.|. ++.|+.+++..++||+- =|-++.|+...... +|. |=|-+.|-.. .+|+..+...|--++ T Consensus 80 LTe~~~F~Gs-----~~~l~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lgle~L 154 (251) T 1i4n_A 80 LTEKHYFKGD-----PAFVRAARNLTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSL 154 (251) T ss_dssp ECCCSSSCCC-----THHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEE T ss_pred ECCCCCCCCC-----HHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEE T ss_conf 6466768997-----88899998614662066436350999689997699899986054889999999999998299864 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHH---CCCEEECHHHHHHHCCCCCCCCC Q ss_conf 836777899999999999972587808995146544401000000010688851---87168711777421223453212 Q gi|254780669|r 163 VKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSM---GVPVIFDASHSVQQPGIHGNCSG 239 (301) Q Consensus 163 iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~---~~PVi~D~SHs~q~p~~~~~~~g 239 (301) +-=+ +.+|+..+++. .|..-|.+--|-- .++-+|+.....+... +..+| +-| | .. T Consensus 155 vEvh---~~~El~~al~~---~~a~iiGINnRdL----~t~~vd~~~~~~l~~~ip~~~~~I---aES-------G--I~ 212 (251) T 1i4n_A 155 VEVH---SREDLEKVFSV---IRPKIIGINTRDL----DTFEIKKNVLWELLPLVPDDTVVV---AES-------G--IK 212 (251) T ss_dssp EEEC---SHHHHHHHHTT---CCCSEEEEECBCT----TTCCBCTTHHHHHGGGSCTTSEEE---EES-------C--CC T ss_pred HHCC---CHHHHHHHHCC---CCCEEEEEECCCH----HHCCCCHHHHHHHHHHCCCCCCEE---ECC-------C--CC T ss_conf 3108---89999988613---7772887515232----200025568999984388898189---837-------9--99 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEE----CCCHHH Q ss_conf 6388999999999971898899983----698334 Q gi|254780669|r 240 GERQYIVPLAKAAVAIGIAGIFLET----HQDPDN 270 (301) Q Consensus 240 G~r~~v~~la~aa~a~G~dGlfiE~----Hp~P~~ 270 (301) ...+ +..+ ..|+||+.+=. .+||.+ T Consensus 213 s~~d-~~~l-----~~G~davLIGesLm~~~dp~~ 241 (251) T 1i4n_A 213 DPRE-LKDL-----RGKVNAVLVGTSIMKAENPRR 241 (251) T ss_dssp CGGG-HHHH-----TTTCSEEEECHHHHHCSSHHH T ss_pred CHHH-HHHH-----HHCCCEEEECHHHHCCCCHHH T ss_conf 9999-9999-----828999998868757999999 No 97 >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* Probab=73.83 E-value=2.6 Score=21.47 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=16.6 Q ss_pred CCCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCC Q ss_conf 77899999999999972-5878089951465444 Q gi|254780669|r 167 QFLSPWEMHNILQKLHA-HGAKDVLFCERGTSFG 199 (301) Q Consensus 167 q~~s~~e~~~a~eki~~-~Gn~~i~lcERG~~fg 199 (301) .+-+|+|....+++... .-+-+.+..==|++.| T Consensus 180 ~~T~Peea~~Fv~~t~~d~tgvD~LAvaiGt~HG 213 (349) T 3elf_A 180 LYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHG 213 (349) T ss_dssp -CCCHHHHHHHHHHHTTSTTSCEEEEECSSCBSS T ss_pred HCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCC T ss_conf 0579999999999845666785368875156566 No 98 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Probab=73.62 E-value=2.7 Score=21.42 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=55.8 Q ss_pred HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH Q ss_conf 21578822576289999999850597799836777899999999999972587808995146544401000000010688 Q gi|254780669|r 134 SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM 213 (301) Q Consensus 134 ~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l 213 (301) -|-++--|.|-.|-.++++..+..-..+-...|...++++...+ ....-+-|++++=.++.|.- .|+..+..+ T Consensus 97 ~vlv~~~G~f~~~~~~ia~~~G~~v~~i~~~~g~~~d~e~i~~~----i~~~~k~v~~~~~~t~TG~~---~di~~I~~i 169 (376) T 3f0h_A 97 KVLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEY----DNQNFTGLLVNVDETSTAVL---YDTMMIGEF 169 (376) T ss_dssp CEEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTT----TTSCCCEEEEESEETTTTEE---CCHHHHHHH T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHH----HCCCCCEEEEECCCCCCCCC---CCHHHHHHH T ss_conf 89999598889999999998199744631689987798999987----25588489983467865403---773676766 Q ss_pred -HHHCCCEEECHHHHH Q ss_conf -851871687117774 Q gi|254780669|r 214 -TSMGVPVIFDASHSV 228 (301) Q Consensus 214 -k~~~~PVi~D~SHs~ 228 (301) ++.+.++++|.+||. T Consensus 170 ~~~~~~~lvvD~v~s~ 185 (376) T 3f0h_A 170 CKKNNMFFVCDCVSAF 185 (376) T ss_dssp HHHTTCEEEEECTTTT T ss_pred HHHCCCEEEEECCCCC T ss_conf 6405955898654335 No 99 >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 Probab=73.62 E-value=4.9 Score=19.70 Aligned_cols=24 Identities=4% Similarity=0.123 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHHHHH--CCEEEEECC Q ss_conf 124888999886652--876885228 Q gi|254780669|r 100 LKKGREIFRDLKKKY--GFPILTDVH 123 (301) Q Consensus 100 le~gL~il~e~k~~~--glpv~TeV~ 123 (301) .+|-..+++.+.+.. .+||+.-|. T Consensus 64 ~~Er~~l~~~~~~~~~~~~~vi~gv~ 89 (306) T 1o5k_A 64 EDEREKLVSRTLEIVDGKIPVIVGAG 89 (306) T ss_dssp HHHHHHHHHHHHHHHTTSSCEEEECC T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 99999999999985488888898468 No 100 >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicusatcc 33223} PDB: 3krz_A* Probab=72.49 E-value=5.2 Score=19.53 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=58.4 Q ss_pred HCCEEEECH-------------HHCCC--------------HHHHHHHHH---CCCEEEEECC------CCCCHHHHHHH Q ss_conf 215788225-------------76289--------------999999850---5977998367------77899999999 Q gi|254780669|r 134 SVDILQIPA-------------LLCRQ--------------TDLLTAAAQ---TGRVINVKKG------QFLSPWEMHNI 177 (301) Q Consensus 134 ~vDilQIgA-------------~~~rq--------------tdLl~a~a~---t~kpV~iKkg------q~~s~~e~~~a 177 (301) ..|.++|-+ .|-|+ .++++++.+ .+.||.++-. -..+++|+... T Consensus 156 GfDgVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~~~~i~~R~s~~~~~~~g~~~~e~~~~ 235 (343) T 3kru_A 156 GYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEY 235 (343) T ss_dssp TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHH T ss_pred CCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHH T ss_conf 98889974033168998138877888776678866735889999999976741577405632510014688987999999 Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHCCC---CCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99997258780899514654440100000---001068885-18716871177742122345321263889999999999 Q gi|254780669|r 178 LQKLHAHGAKDVLFCERGTSFGYNTLVTD---MRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAV 253 (301) Q Consensus 178 ~eki~~~Gn~~i~lcERG~~fgy~~lvvD---~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~ 253 (301) +..+...+. .+...-.|. .....-... ..-....|+ ...||+.- ||-. -+..|..++ T Consensus 236 ~~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~---------------G~i~--~~e~ae~~l 296 (343) T 3kru_A 236 INMIKDKVD-LIDVSSGGL-LNVDINLYPGYQVKYAETIKKRCNIKTSAV---------------GLIT--TQELAEEIL 296 (343) T ss_dssp HHHHTTTCS-EEEEECCCS-SCCCCCCCTTTTHHHHHHHHHHHTCEEEEE---------------SSCC--CHHHHHHHH T ss_pred HHHHHHHCC-CEEECCCCC-CCCCCCCCCCCCHHHHHHHHHHCCCCEEEE---------------CCCC--CHHHHHHHH T ss_conf 999886344-302202555-455557775321679999999749888998---------------9949--999999999 Q ss_pred HHC-CCEEEEE Q ss_conf 718-9889998 Q gi|254780669|r 254 AIG-IAGIFLE 263 (301) Q Consensus 254 a~G-~dGlfiE 263 (301) +.| +|.+.+- T Consensus 297 ~~g~~DlV~~g 307 (343) T 3kru_A 297 SNERADLVALG 307 (343) T ss_dssp HTTSCSEEEES T ss_pred HCCCCEEHHHH T ss_conf 87992126863 No 101 >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1 Probab=72.40 E-value=5.2 Score=19.52 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=75.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCEEEEE-----------------------------------C--C--CHHHHHHH-HHHCC Q ss_conf 5671248889998866528768852-----------------------------------2--8--89999876-50215 Q gi|254780669|r 97 GVGLKKGREIFRDLKKKYGFPILTD-----------------------------------V--H--TEQQCEAI-ADSVD 136 (301) Q Consensus 97 G~Gle~gL~il~e~k~~~glpv~Te-----------------------------------V--~--~~~~~e~~-~~~vD 136 (301) +..++++.++|.+-|.+ -+||+.+ | . +.+-++.+ ...+| T Consensus 173 ~~s~~eA~~lm~e~kie-~lPVVd~~g~LvGLiT~kDi~k~~~~p~a~~D~~grL~VgAAVg~~~~~~eRa~~Lv~aGvD 251 (494) T 1vrd_A 173 DISLEKAKEILHQHRIE-KLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKAGVD 251 (494) T ss_dssp -------------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCS T ss_pred CCCHHHHHHHHHHCCCC-CEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCC T ss_conf 78999999999753546-11288688978778872653553418744427779889999977782028999999976998 Q ss_pred EEEECHHHCCCH---HHHHHHHHC--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--C-------CCCHH Q ss_conf 788225762899---999998505--977998367778999999999999725878089951465--4-------44010 Q gi|254780669|r 137 ILQIPALLCRQT---DLLTAAAQT--GRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGT--S-------FGYNT 202 (301) Q Consensus 137 ilQIgA~~~rqt---dLl~a~a~t--~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~--~-------fgy~~ 202 (301) ++-|=.-+-.+- +.++.+-.. +.||.. |-..+.+ +++.+...|...|.++==+- + +|+.. T Consensus 252 ~ivID~Ahghs~~~~~~i~~ik~~~~~~~via--Gnv~t~~----~a~~L~~aGad~i~VGiG~Gs~CtTr~~~g~g~pq 325 (494) T 1vrd_A 252 VIVIDTAHGHSRRVIETLEMIKADYPDLPVVA--GNVATPE----GTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494) T ss_dssp EEEECCSCCSSHHHHHHHHHHHHHCTTSCEEE--EEECSHH----HHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCH T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE--EEECCHH----HHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCHH T ss_conf 99995466437999999999998689986797--5324299----99999983988888541178662262300446217 Q ss_pred HCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 0000001068885187168711777421223453212638899999999997189889998 Q gi|254780669|r 203 LVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 203 lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) +-.=+......++++.|||.|--... ..+. + .|+|+|+|.+|+= T Consensus 326 ~sav~~~~~~~~~~~v~iiADGGi~~------------~gdi----~-KAla~GAd~VMlG 369 (494) T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRY------------SGDI----V-KALAAGAESVMVG 369 (494) T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCS------------HHHH----H-HHHHTTCSEEEES T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCC------------CCHH----H-HHHHHCCCHHHHC T ss_conf 88999999998655966993488576------------6669----9-9987277662333 No 102 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=72.37 E-value=5.2 Score=19.51 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=80.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEE-ECCCHHHHHHHH Q ss_conf 999999999999999655339970660155768866632224567124888999886652-876885-228899998765 Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILT-DVHTEQQCEAIA 132 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~T-eV~~~~~~e~~~ 132 (301) ++.+.+..+++.+.+.|.+.. . -.+|.+ .+++.+++++++| ++-+-. -|.+.+|++.+. T Consensus 26 ~~~~~~~~~~~al~~~Gi~~i---------E-------ITl~t~---~a~~~i~~l~~~~p~~~vGaGTVl~~~~~~~a~ 86 (224) T 1vhc_A 26 DNADDILPLADTLAKNGLSVA---------E-------ITFRSE---AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAK 86 (224) T ss_dssp SSGGGHHHHHHHHHHTTCCEE---------E-------EETTST---THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEE---------E-------EECCCC---HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH T ss_conf 999999999999998799889---------9-------968980---399999999986899189620204579999999 Q ss_pred H-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 0-2157882257628999999985059779983677789999999999997258780899 Q gi|254780669|r 133 D-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 133 ~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) + .++.+=-|. -+.++++.+-+.+.|+. +=.+||.|...|.++ |.+-+-+ T Consensus 87 ~aGA~FivSP~---~~~~v~~~a~~~~i~~i---PG~~TpsEi~~A~~~----G~~~vKl 136 (224) T 1vhc_A 87 SSGADFVVTPG---LNPKIVKLCQDLNFPIT---PGVNNPMAIEIALEM----GISAVKF 136 (224) T ss_dssp HHTCSEEECSS---CCHHHHHHHHHTTCCEE---CEECSHHHHHHHHHT----TCCEEEE T ss_pred HHCCCEEECCC---CCHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHC----CCCEEEE T ss_conf 83799897278---99999999985699845---885887999999985----9996887 No 103 >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Probab=71.36 E-value=5.5 Score=19.37 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=80.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEE-ECCCHHHHHHH Q ss_conf 4999999999999999655339970660155768866632224567124888999886652-876885-22889999876 Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILT-DVHTEQQCEAI 131 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~T-eV~~~~~~e~~ 131 (301) .++.|++..+++.|.+.|.+.. . -.+|.+ .+++.+++++++| ++-+-. -|++.+|++.+ T Consensus 24 ~~~~~~a~~i~~al~~~Gi~~i---------E-------Itl~tp---~a~~~i~~l~~~~p~~~iGaGTV~~~e~~~~a 84 (214) T 1wbh_A 24 VKKLEHAVPMAKALVAGGVRVL---------N-------VTLRTE---CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEV 84 (214) T ss_dssp CSSGGGHHHHHHHHHHTTCCEE---------E-------EESCST---THHHHHHHHHHHCTTSEEEEESCCSHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEE---------E-------EECCCH---HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH T ss_conf 8999999999999998799889---------9-------937986---79999999998789967952454536899999 Q ss_pred HH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 50-2157882257628999999985059779983677789999999999997258780899 Q gi|254780669|r 132 AD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 132 ~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) .+ .++.+=-|. -+.++++.+.+.+.|+. +=.+||.|...|.+ .|.+-+-+ T Consensus 85 ~~aGa~FivsP~---~~~~v~~~a~~~~i~~i---PGv~TpsEi~~A~~----~G~~~vK~ 135 (214) T 1wbh_A 85 TEAGAQFAISPG---LTEPLLKAATEGTIPLI---PGISTVSELMLGMD----YGLKEFKF 135 (214) T ss_dssp HHHTCSCEEESS---CCHHHHHHHHHSSSCEE---EEESSHHHHHHHHH----TTCCEEEE T ss_pred HHCCCCEEECCC---CCHHHHHHHHHCCCCCC---CCCCCHHHHHHHHH----CCCCEEEE T ss_conf 981998998589---99999999985499753---78498899999998----59995997 No 104 >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Probab=70.73 E-value=5.7 Score=19.28 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=66.2 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) ..+|+|- +-.|.+...+.|+..++.|.+. .+.-| |+.|+ +.-++-.++++++.+..++|++- T Consensus 74 ~~vi~gv-~~~~~~~~i~la~~a~~~Gad~---v~~~p---------P~~~~-~~~~~~~~~~~~ia~~~~~pi~i---- 135 (293) T 1f6k_A 74 IALIAQV-GSVNLKEAVELGKYATELGYDC---LSAVT---------PFYYK-FSFPEIKHYYDTIIAETGSNMIV---- 135 (293) T ss_dssp SEEEEEC-CCSCHHHHHHHHHHHHHHTCSE---EEEEC---------CCSSC-CCHHHHHHHHHHHHHHHCCCEEE---- T ss_pred CEEEEEC-CCCCHHHHHHHHHHHHHCCCCE---EEECC---------CCCCC-CCCHHHHHHHHHHHHCCCCEEEE---- T ss_conf 4299835-7677999999999999759997---77258---------51123-24199999999985058862788---- Q ss_pred HHHHHHHHHHCCEEEECHHH--CCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 99998765021578822576--289999999850597799836777899999999999972587808995 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALL--CRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~--~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) .++|.+. .-..+++.++++....+-+|-.-. ++..+.. .....++..++.+ T Consensus 136 -------------Yn~P~~~g~~l~~~~l~~L~~~~~v~giK~~~~-~~~~~~~---~~~~~~~~~v~~g 188 (293) T 1f6k_A 136 -------------YSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAG-DFYLLER---LKKAYPNHLIWAG 188 (293) T ss_dssp -------------EECHHHHCCCCCHHHHHHHHTSTTEEEEEECSC-CHHHHHH---HHHHCTTSEEEEC T ss_pred -------------EECCCCCCCCCCHHHHHHHHHHCCCEEEEECCC-CHHHHHH---HHHHCCCEEEEEC T ss_conf -------------605410178886899999986358518996788-6999999---9984898489758 No 105 >1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis} Probab=70.49 E-value=4.5 Score=19.93 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=28.5 Q ss_pred EEEECHHHCCC--HHHHHHHHHCCCEEEEEC---------CCCCCHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 78822576289--999999850597799836---------7778999999999999725878089951 Q gi|254780669|r 137 ILQIPALLCRQ--TDLLTAAAQTGRVINVKK---------GQFLSPWEMHNILQKLHAHGAKDVLFCE 193 (301) Q Consensus 137 ilQIgA~~~rq--tdLl~a~a~t~kpV~iKk---------gq~~s~~e~~~a~eki~~~Gn~~i~lcE 193 (301) .+|+|||--+. ..++..+...|.+..+.+ |.|.+.++...+.+++...|.+-+++.+ T Consensus 11 ~VQvgaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yrV~vGpf~~~~~A~~~~~~lk~~g~~~~iv~~ 78 (79) T 1x60_A 11 KVQIGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDAIVILE 78 (79) T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCCEEEEE T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99999808999999999999865996399855833999996769999999999999983997099972 No 106 >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2- propyl-3-methylmalate lyase; 2.70A {Dianthus caryophyllus} Probab=69.60 E-value=6 Score=19.12 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=97.1 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHC------CC-------HHHHHHHHH-----CCCEEEEEC- Q ss_conf 99988665287688522889999876502-15788225762------89-------999999850-----597799836- Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLC------RQ-------TDLLTAAAQ-----TGRVINVKK- 165 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~------rq-------tdLl~a~a~-----t~kpV~iKk- 165 (301) -|+++=+.-+.-++-.++|+-.+-.+.+. .+.+++..+-+ .- ++++..+.+ +..||.+-= T Consensus 30 ~lr~ll~~~~~l~lp~~~D~~SAr~~e~aGf~ai~~ss~~~aas~lG~PD~~~~~~~e~~~~~~~I~~~~~~~PvivD~D 109 (318) T 1zlp_A 30 TMHRLIEEHGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGD 109 (318) T ss_dssp HHHHHHHHSSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECT T ss_pred HHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECC T ss_conf 99999708998895078789999999982999996108999966679998887889999999998642367888536325 Q ss_pred -CCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCHH--HCCCCC----CCHHHH--HHCCC-EE---ECHHHHHHH Q ss_conf -7778999999999999725878089951465--444010--000000----106888--51871-68---711777421 Q gi|254780669|r 166 -GQFLSPWEMHNILQKLHAHGAKDVLFCERGT--SFGYNT--LVTDMR----SIPIMT--SMGVP-VI---FDASHSVQQ 230 (301) Q Consensus 166 -gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~--~fgy~~--lvvD~~----~i~~lk--~~~~P-Vi---~D~SHs~q~ 230 (301) | |-.+.++...++.+...|.--|.+=..-. ..|+.. .+.+.. -+-..+ +.+-+ +| .|.-+. T Consensus 110 ~G-~G~~~~v~~~v~~~~~aG~aGi~IEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~--- 185 (318) T 1zlp_A 110 TG-GGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAP--- 185 (318) T ss_dssp TC-SSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHH--- T ss_pred CC-CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHC--- T ss_conf 68-87178999999999982565256531126765676543223668999999986787627987078853223213--- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHC--C---CCCC-----------CCCCHHHHHHH Q ss_conf 22345321263889999999999718988999836983347--9---7820-----------18688999999 Q gi|254780669|r 231 PGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNA--P---SDGP-----------NMINIKDLPKL 287 (301) Q Consensus 231 p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~A--l---sD~~-----------q~l~l~~l~~l 287 (301) .|--+-+ .=+++-..+|+|++|++.=.+++.. + .+++ ..++.++|.++ T Consensus 186 --------~gl~eai-~Ra~aY~eAGAD~ifi~g~~~~~~i~~~~~~~~~p~~~~~~~g~~~p~ls~~eL~~l 249 (318) T 1zlp_A 186 --------HGLEEGI-RRANLYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGKTPLHTPEEFKEM 249 (318) T ss_dssp --------HHHHHHH-HHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSSSCCCCHHHHHHH T ss_pred --------CCCHHHH-HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHC T ss_conf --------6818899-999999980898885367899999999999758983352379999853339999967 No 107 >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Probab=69.35 E-value=6.1 Score=19.09 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=77.3 Q ss_pred CCEEEEECCCHHHHHHHHHH-CCEEEECHHHC-------------CCHHHHHHHHH------CCCEEEEE--CCCCCCHH Q ss_conf 87688522889999876502-15788225762-------------89999999850------59779983--67778999 Q gi|254780669|r 115 GFPILTDVHTEQQCEAIADS-VDILQIPALLC-------------RQTDLLTAAAQ------TGRVINVK--KGQFLSPW 172 (301) Q Consensus 115 glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~-------------rqtdLl~a~a~------t~kpV~iK--kgq~~s~~ 172 (301) .+-++-.+||+-.+..+.+. .|.+++..+-+ ..++++..+.+ .+.||.+- .|+ -++. T Consensus 25 ~~~~~p~~~D~lSAr~~e~aGf~ai~~sg~~~aas~lG~PD~~~~~~~e~~~~~~~i~~~~~~~iPviaD~d~Gy-G~~~ 103 (307) T 3lye_A 25 ELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGY-GGPI 103 (307) T ss_dssp CCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCS-SSHH T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CCHH T ss_conf 869947888889999999839999997669998665499987744158999999998840266888798833467-7589 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC--CCCC---HHHCC--C----CCCCHH-HHHHCC-CEE---ECHHHHHHHCCCCCC Q ss_conf 999999999725878089951465--4440---10000--0----001068-885187-168---711777421223453 Q gi|254780669|r 173 EMHNILQKLHAHGAKDVLFCERGT--SFGY---NTLVT--D----MRSIPI-MTSMGV-PVI---FDASHSVQQPGIHGN 236 (301) Q Consensus 173 e~~~a~eki~~~Gn~~i~lcERG~--~fgy---~~lvv--D----~~~i~~-lk~~~~-PVi---~D~SHs~q~p~~~~~ 236 (301) ++...++.+...|.--|.+=..-. ..++ ..++. + +++... .++.+- -+| .|+-+. T Consensus 104 ~v~~tv~~~~~aGaagi~IEDq~~~k~~~~~~~~~l~~~ee~~~kikAa~~~~~~~~~d~~IiARTDa~~~--------- 174 (307) T 3lye_A 104 MVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQS--------- 174 (307) T ss_dssp HHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHH--------- T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--------- T ss_conf 99999999997699678732442676578764324589999999999899887336987289971364333--------- Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH Q ss_conf 212638899999999997189889998369833 Q gi|254780669|r 237 CSGGERQYIVPLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 237 ~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) .|--|-+. =+++-..+|+|++|+|.-.+++ T Consensus 175 --~g~deAI~-Ra~aY~~AGAD~ifi~g~~s~e 204 (307) T 3lye_A 175 --LGYEECIE-RLRAARDEGADVGLLEGFRSKE 204 (307) T ss_dssp --HCHHHHHH-HHHHHHHTTCSEEEECCCSCHH T ss_pred --CCHHHHHH-HHHHHHHCCCCEEEECCCCCHH T ss_conf --57189999-9996376399998625889999 No 108 >1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} SCOP: c.1.4.1 PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* 3kvm_A* 2b0m_A* 1uum_A* ... Probab=69.23 E-value=6.1 Score=19.07 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=84.0 Q ss_pred CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--C--------------CCCCCCC Q ss_conf 27976997069995486349999999999999996553399706601557688666--3--------------2224567 Q gi|254780669|r 36 QVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSS--L--------------AGKRGVG 99 (301) Q Consensus 36 ~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS--~--------------~sfrG~G 99 (301) +++|-| |+.+=|||+. +.+++ +.+.+.|. =..+.|+.+.++.... | .+|...| T Consensus 56 Gl~~~n--Pi~lASG~~~--~~~~i----~~~~~~G~---G~vv~kTit~~~~~gn~~p~~~~~~~~~~~~n~~g~~~~g 124 (367) T 1d3g_A 56 GHKFRN--PVGIAAGFDK--HGEAV----DGLYKMGF---GFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHG 124 (367) T ss_dssp TEEESS--SEEECTTSST--TSSSH----HHHHHHTC---SEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCC T ss_pred CEECCC--CCEECCCCCC--CHHHH----HHHHCCCC---CEEEECCCCCCCCCCCCCCCEEECCCCCCHHCCCCCCCCH T ss_conf 986699--8578978898--89999----99765862---1899682247742678987503455430012014646620 Q ss_pred CHHHHHHHHHHH------HHHCCEEEEECCC--------HHHH---HHHHHHCCEEEECHHHCCCH---------H---- Q ss_conf 124888999886------6528768852288--------9999---87650215788225762899---------9---- Q gi|254780669|r 100 LKKGREIFRDLK------KKYGFPILTDVHT--------EQQC---EAIADSVDILQIPALLCRQT---------D---- 149 (301) Q Consensus 100 le~gL~il~e~k------~~~glpv~TeV~~--------~~~~---e~~~~~vDilQIgA~~~rqt---------d---- 149 (301) .+.-++.+.... .+.++|+..-|.. .+.. .....++|.+.+. +.|-|+ + T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~pv~~sI~~~~~~~~~~~~~~~~~~~~~~~ad~lelN-~S~pn~~~~~~~~~~~~~~~ 203 (367) T 1d3g_A 125 LSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVN-VSSPNTAGLRSLQGKAELRR 203 (367) T ss_dssp HHHHHHHHHTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEE-SCCTTSTTC----CHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCHHHHH T ss_conf 89999878887652033244687289997157673779999999999863215512334-35676212433457403789 Q ss_pred H----HHHHH----HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 9----99985----059779983677789999999999997258780899514 Q gi|254780669|r 150 L----LTAAA----QTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCER 194 (301) Q Consensus 150 L----l~a~a----~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301) + ++... ...+||.+|-+...+..+...+++.+...|...++++-. T Consensus 204 ~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~~~~~~~~g~~gv~~~n~ 256 (367) T 1d3g_A 204 LLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNT 256 (367) T ss_dssp HHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECC T ss_conf 99999998753202357752135687641144554566665410225876334 No 109 >3ffr_A Phosphoserine aminotransferase SERC; YP_677612.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} Probab=69.02 E-value=4.5 Score=19.97 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=48.3 Q ss_pred HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 02157882257628999999985059779983677789999999999997258780899514654440100000001068 Q gi|254780669|r 133 DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPI 212 (301) Q Consensus 133 ~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~ 212 (301) +-++++-.|+|--+-.++.+..+..-..+...-|....++++. .+..-+-|.+|+--++.|.-+ |+..|.. T Consensus 84 ~~~~~i~~g~~~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~------~~~~~~~v~~~h~~t~tG~~~---pi~~I~~ 154 (362) T 3ffr_A 84 KKSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT------VPADAEIICLTHNETSSGVSM---PVEDINT 154 (362) T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC------CCTTCCEEEEESEETTTTEEC---CHHHHTT T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH------CCCCCCEEEEECCCCCCCEEE---CHHHHHH T ss_conf 5505884681378999999751850048626767546876752------377876588853458765463---3154411 Q ss_pred HH-H-HCCCEEECHHHHH Q ss_conf 88-5-1871687117774 Q gi|254780669|r 213 MT-S-MGVPVIFDASHSV 228 (301) Q Consensus 213 lk-~-~~~PVi~D~SHs~ 228 (301) +. + .+.++++|++.|+ T Consensus 155 ~~~k~~~~l~~vDa~qs~ 172 (362) T 3ffr_A 155 FRDKNKDALIFVDAVSSL 172 (362) T ss_dssp SGGGSTTSEEEEECTTTT T ss_pred HHHCCCCCEEEECCCCCC T ss_conf 110257824752565443 No 110 >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* Probab=68.22 E-value=6.4 Score=18.93 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=48.6 Q ss_pred HHHHHHCCEEEECHHHCCCH-------------HHHHHHHH----------------------CCCEEEEECCCCCCHHH Q ss_conf 87650215788225762899-------------99999850----------------------59779983677789999 Q gi|254780669|r 129 EAIADSVDILQIPALLCRQT-------------DLLTAAAQ----------------------TGRVINVKKGQFLSPWE 173 (301) Q Consensus 129 e~~~~~vDilQIgA~~~rqt-------------dLl~a~a~----------------------t~kpV~iKkgq~~s~~e 173 (301) ..+..++|.+-|- .-|-|| +|+.++.+ ...||.+|=...++..+ T Consensus 206 ~~~~~~aD~~eiN-iScPNt~~lr~lq~~~~l~~ll~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PI~vKLsPd~~~~~ 284 (415) T 3i65_A 206 NKIGRYADYIAIN-VSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQ 284 (415) T ss_dssp HHHGGGCSEEEEE-CCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHH T ss_pred HHHHCCCCCCEEC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEECCCCCHHH T ss_conf 9851237700003-778765554234567789999999999998765302210000000124667857998389987778 Q ss_pred HHHHHHHHHHCCCCCEEEEECC Q ss_conf 9999999972587808995146 Q gi|254780669|r 174 MHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 174 ~~~a~eki~~~Gn~~i~lcERG 195 (301) ...+++-+.+.|..-|+++-.- T Consensus 285 i~~ia~~a~~~g~dgii~~Ntt 306 (415) T 3i65_A 285 KKEIADVLLETNIDGMIISNTT 306 (415) T ss_dssp HHHHHHHHHHHTCSEEEECCCB T ss_pred HHHHHHHHHHCCCCCEEECCCC T ss_conf 9999999997265231211453 No 111 >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A Probab=67.91 E-value=6.5 Score=18.89 Aligned_cols=108 Identities=8% Similarity=0.093 Sum_probs=58.4 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCH Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665287688522889 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTE 125 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~ 125 (301) .+|+|- +-.|.+...+.++..++.|.+ +...-| |+.+ .+.-++-.++++++.+..++|++- T Consensus 73 pvi~gv-~~~s~~~~i~~a~~a~~~Gad---~v~v~p---------P~~~-~~~~~~i~~~~~~va~~~~~pi~l----- 133 (292) T 3daq_A 73 PVIAGT-GTNDTEKSIQASIQAKALGAD---AIMLIT---------PYYN-KTNQRGLVKHFEAIADAVKLPVVL----- 133 (292) T ss_dssp CEEEEC-CCSCHHHHHHHHHHHHHHTCS---EEEEEC---------CCSS-CCCHHHHHHHHHHHHHHHCSCEEE----- T ss_pred CEEECC-CCCCHHHHHHHHHHHHHCCCC---EEEEEC---------CCCC-CCCHHHHHHHHHHHHHCCCCCEEE----- T ss_conf 667336-788899999999999965999---899945---------7678-899999999999998455998899----- Q ss_pred HHHHHHHHHCCEEEECHHHC--CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 99987650215788225762--8999999985059779983677789999999999997258780 Q gi|254780669|r 126 QQCEAIADSVDILQIPALLC--RQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKD 188 (301) Q Consensus 126 ~~~e~~~~~vDilQIgA~~~--rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~ 188 (301) .++|.+.- ...+++..+++....|-+|..- .++..+ .+.+...+..+ T Consensus 134 ------------Yn~p~~~g~~~~~~~~~~l~~~~~vv~iK~~~-~~~~~~---~~~~~~~~~~~ 182 (292) T 3daq_A 134 ------------YNVPSRTNMTIEPETVEILSQHPYIVALKDAT-NDFEYL---EEVKKRIDTNS 182 (292) T ss_dssp ------------EECHHHHSCCCCHHHHHHHHTSTTEEEEEECC-CCHHHH---HHHHTTSCTTT T ss_pred ------------EECCCCCCCCCCHHHHHHHHHCCCCEEEEECC-CCHHHH---HHHHHHHCCCE T ss_conf ------------97886357876989999998377852899899-999999---99998633770 No 112 >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* Probab=67.87 E-value=4.3 Score=20.09 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHHHHCCCC Q ss_conf 999999999965533997 Q gi|254780669|r 60 AFMIAEKLYAICQSLNIG 77 (301) Q Consensus 60 ~~~~A~~lk~~~~~~~~~ 77 (301) ..++++.+++.+.++... T Consensus 83 lk~l~d~vh~~G~~~~~Q 100 (365) T 2gou_A 83 WRIVTEAVHAKGCAIFAQ 100 (365) T ss_dssp HHHHHHHHHHHSCEEEEE T ss_pred HHHHHHHHHHCCCCEEEC T ss_conf 779999987479817843 No 113 >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 Probab=67.82 E-value=6.5 Score=18.88 Aligned_cols=206 Identities=14% Similarity=0.099 Sum_probs=122.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH Q ss_conf 4999999999999999655339-970660155768866632224567124888999886652876885228899998765 Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIA 132 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~ 132 (301) ..+.+.+++-|+.+.+-|+++. +|+. ++-+-+.+.| -+. -++.-..+++.++ ..++++--|-..++-++.+. T Consensus 25 ~~~~~~a~~~a~~~i~~GAdiIDIG~e--STrPg~~~i~---~ee-E~~Rl~p~i~~~~-~~~~~iSvDT~~~~Va~~al 97 (280) T 1eye_A 25 YLDLDDAVKHGLAMAAAGAGIVDVGGE--SSRPGATRVD---PAV-ETSRVIPVVKELA-AQGITVSIDTMRADVARAAL 97 (280) T ss_dssp CCSHHHHHHHHHHHHHTTCSEEEEECC--------------------HHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCE--ECCCCCCCCC---HHH-HHHCCCCEEEEEC-CCCCEEEEEECCHHHHHHHH T ss_conf 889999999999999889949998962--0799895269---999-8632465133211-35844768527689999999 Q ss_pred H-HCCEEE-ECHHHCCCHHHHHHHHHCCCEEEEEC--CC-----C-----CC-HH----HHHHHHHHHHHCCCC-CEEEE Q ss_conf 0-215788-22576289999999850597799836--77-----7-----89-99----999999999725878-08995 Q gi|254780669|r 133 D-SVDILQ-IPALLCRQTDLLTAAAQTGRVINVKK--GQ-----F-----LS-PW----EMHNILQKLHAHGAK-DVLFC 192 (301) Q Consensus 133 ~-~vDilQ-IgA~~~rqtdLl~a~a~t~kpV~iKk--gq-----~-----~s-~~----e~~~a~eki~~~Gn~-~i~lc 192 (301) + .+||+- |-++. .+..++..+++.+.++.+-. |. . -. .. .+...++.+.+.|.. +=++. T Consensus 98 ~~Ga~iINDvsg~~-~d~~m~~~~a~~~~~~ilmH~~g~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~Gi~~~~Iil 176 (280) T 1eye_A 98 QNGAQMVNDVSGGR-ADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVL 176 (280) T ss_dssp HTTCCEEEETTTTS-SCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE T ss_pred HCCCEEEEECCCCC-CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 73983897304354-66167777640478769983156653322235545530555799999999999987986444998 Q ss_pred ECCCCCCCHH--HCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCC-----CCCCCHHHHHHHHHHH--HHHCCCEEEEE Q ss_conf 1465444010--0000001068885187168711777421223453-----2126388999999999--97189889998 Q gi|254780669|r 193 ERGTSFGYNT--LVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGN-----CSGGERQYIVPLAKAA--VAIGIAGIFLE 263 (301) Q Consensus 193 ERG~~fgy~~--lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~-----~~gG~r~~v~~la~aa--~a~G~dGlfiE 263 (301) .=|+-||.+. ..-=++++..++.+++|+++-.|.=-..-.-.+. ...-.| ...+++-++ +..|++ ++- T Consensus 177 DPG~GFgKt~~~n~~ll~~l~~~~~~~~PiLvG~SRKsfig~~l~~~~~~~~~~~~R-~~~T~a~~~~a~~~Ga~--iiR 253 (280) T 1eye_A 177 DPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGR-DTATAVISALAALHGAW--GVR 253 (280) T ss_dssp ECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHTCCSSSCCCCGGGG-HHHHHHHHHHHHHTTCS--EEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHCCCC--EEE T ss_conf 088677757625899998887861489836986137789998755876555886763-18999999999987999--999 Q ss_pred ECCCHHH Q ss_conf 3698334 Q gi|254780669|r 264 THQDPDN 270 (301) Q Consensus 264 ~Hp~P~~ 270 (301) ||.-.+. T Consensus 254 VHDV~e~ 260 (280) T 1eye_A 254 VHDVRAS 260 (280) T ss_dssp ESCHHHH T ss_pred ECCHHHH T ss_conf 7998999 No 114 >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Probab=67.75 E-value=4.4 Score=20.04 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=6.9 Q ss_pred HHCCEEEEECCCHH Q ss_conf 52876885228899 Q gi|254780669|r 113 KYGFPILTDVHTEQ 126 (301) Q Consensus 113 ~~glpv~TeV~~~~ 126 (301) +-|-.++-|-..+. T Consensus 121 ~~g~v~I~Datn~t 134 (469) T 1bif_A 121 EGGHVAVFDATNTT 134 (469) T ss_dssp TCCSEEEEESCCCS T ss_pred CCCCEEEEECCCCC T ss_conf 69929999689899 No 115 >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionine MAD, decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 Probab=67.35 E-value=6.7 Score=18.82 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=100.3 Q ss_pred HHHHHHHHHHHCCE-EEEECCCHHHHHHHHH-HCCEEEECHHH------CCCH------H---HHHHHHH----CCCEEE Q ss_conf 88999886652876-8852288999987650-21578822576------2899------9---9999850----597799 Q gi|254780669|r 104 REIFRDLKKKYGFP-ILTDVHTEQQCEAIAD-SVDILQIPALL------CRQT------D---LLTAAAQ----TGRVIN 162 (301) Q Consensus 104 L~il~e~k~~~glp-v~TeV~~~~~~e~~~~-~vDilQIgA~~------~rqt------d---Ll~a~a~----t~kpV~ 162 (301) +.-|++.|.+ |-| +.....|...+..+.+ .+|++=||-=+ ..+| + -.+++.| +-..+- T Consensus 6 i~~l~~~K~~-g~ki~~lTayD~~~A~~~~~agiD~iLVGDSlgmv~~G~~~T~~vtld~mi~h~~aV~rga~~~~iv~D 84 (264) T 1m3u_A 6 ISLLQKYKQE-KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLAD 84 (264) T ss_dssp HHHHHHHHHH-TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEE T ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCEECHHHHHHHHHHHHHHCCCCCEEEC T ss_conf 9999998737-995899978999999999977998899827688740687677630677898999999852446526836 Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEE----CHHHHHHHCC-CCCCC Q ss_conf 836777899999999999972587808995146544401000000010688851871687----1177742122-34532 Q gi|254780669|r 163 VKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIF----DASHSVQQPG-IHGNC 237 (301) Q Consensus 163 iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~----D~SHs~q~p~-~~~~~ 237 (301) +--+.+.+.++-+..+.++...|. +.+-||.|.. + ...+..|.+.+.||+- =|.+..+.-| -..+. T Consensus 85 mPf~sy~~~~~a~~~a~~~~~~Ga-daVKlEgg~~--~------~~~I~~L~~~GIPV~gHiGLtPQ~~~~~GG~k~qGk 155 (264) T 1m3u_A 85 LPFMAYATPEQAFENAATVMRAGA-NMVKIEGGEW--L------VETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGR 155 (264) T ss_dssp CCTTSSSSHHHHHHHHHHHHHTTC-SEEECCCSGG--G------HHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCC T ss_pred CCCCCCCCCHHHHHHHHHHHHCCC-CEEEECCCCH--H------HHHHHHHHHCCCEEEEECCCCCHHHHHCCCCEECCC T ss_conf 885222455999999999997199-7898469710--7------899999998798687632787222011488401474 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCH Q ss_conf 1263889999999999718988999836983 Q gi|254780669|r 238 SGGERQYIVPLAKAAVAIGIAGIFLETHQDP 268 (301) Q Consensus 238 ~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P 268 (301) +....+-+..-|++--.+|+.++-+|+=|.+ T Consensus 156 t~~ea~~l~~dA~~le~AGaf~ivlE~Vp~~ 186 (264) T 1m3u_A 156 GDEAGDQLLSDALALEAAGAQLLVLECVPVE 186 (264) T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEESCCHH T ss_pred CHHHHHHHHHHHHHHHHHHHHEEEEECCCHH T ss_conf 7799999999999999733046775317588 No 116 >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Probab=66.79 E-value=6.8 Score=18.75 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=77.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCEEEEECC---------------------------------------CHHHHHHH-HHHCC Q ss_conf 567124888999886652876885228---------------------------------------89999876-50215 Q gi|254780669|r 97 GVGLKKGREIFRDLKKKYGFPILTDVH---------------------------------------TEQQCEAI-ADSVD 136 (301) Q Consensus 97 G~Gle~gL~il~e~k~~~glpv~TeV~---------------------------------------~~~~~e~~-~~~vD 136 (301) +.-+++..++|.+.|.+ -+|++.+-- +.+-++.+ ...+| T Consensus 191 ~~~~~ea~~~l~~~~~~-~lpvvd~~g~L~glit~kDi~k~~~~p~a~~D~~grL~VgAAvg~~~~~~era~aLv~aG~d 269 (514) T 1jcn_A 191 GVTLKEANEILQRSKKG-KLPIVNDCDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVD 269 (514) T ss_dssp TCCSTTTTTHHHHHTCS-CCCEESSSSCCC----CCCCSSCCCCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCS T ss_pred CCCHHHHHHHHHHHHCC-CCCEECCCCCEEEEEEEEHHHHCCCCCCCCCHHHHCEEEEEEEECCHHHHHHHHHHHHCCCC T ss_conf 74478999999861205-66377379978999985204433035433331764772236760485279999999853897 Q ss_pred EEEECHHHCCCH---HHHHHHHHCC--CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC----------CCCCH Q ss_conf 788225762899---9999985059--77998367778999999999999725878089951465----------44401 Q gi|254780669|r 137 ILQIPALLCRQT---DLLTAAAQTG--RVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGT----------SFGYN 201 (301) Q Consensus 137 ilQIgA~~~rqt---dLl~a~a~t~--kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~----------~fgy~ 201 (301) ++-|-.-+-.+. ++++.+.+.. .||.. |--.+++ +++.+...|..-|.. =-|. -+|+. T Consensus 270 ~iviD~Ahg~s~~v~~~ik~ik~~~~~~~iia--GNVaT~~----~~~~L~~aGad~vkV-GiG~Gs~CtTr~~~GvG~p 342 (514) T 1jcn_A 270 VIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIG--GNVVTAA----QAKNLIDAGVDGLRV-GMGCGSICITQEVMACGRP 342 (514) T ss_dssp EEEECCSCCCSHHHHHHHHHHHHHCTTCEEEE--EEECSHH----HHHHHHHHTCSEEEE-CSSCSCCBTTBCCCSCCCC T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE--EEECCHH----HHHHHHHHCCCEEEE-ECCCCCCCCCCCCCCCCCC T ss_conf 79962345127789999999997689971886--3123699----999999838888986-0346766567552234785 Q ss_pred HHCCCCCCCH----HHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 0000000106----8885187168711777421223453212638899999999997189889998 Q gi|254780669|r 202 TLVTDMRSIP----IMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 202 ~lvvD~~~i~----~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) . +.++. ..++++.|||-|---. +.-.++ .|+|+|+|.+|+- T Consensus 343 q----~sai~~~a~~~~~~~v~iIADGGi~----------------~~GDi~-KAla~GAd~VMlG 387 (514) T 1jcn_A 343 Q----GTAVYKVAEYARRFGVPIIADGGIQ----------------TVGHVV-KALALGASTVMMG 387 (514) T ss_dssp H----HHHHHHHHHHHGGGTCCEEEESCCC----------------SHHHHH-HHHHTTCSEEEES T ss_pred H----HHHHHHHHHHHHHCCCCEEECCCCC----------------CCCHHH-HHHHCCCCEEEEC T ss_conf 8----9999999999997599289468805----------------346799-9987189889967 No 117 >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} Probab=66.71 E-value=6.9 Score=18.74 Aligned_cols=106 Identities=9% Similarity=0.091 Sum_probs=56.5 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCEEEEECC Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665--2876885228 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKK--YGFPILTDVH 123 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~--~glpv~TeV~ 123 (301) .+|+| |+-.|-+.+.+.|+..++.|.+. .+--|. +.+. .-++-..++.++-+. .++||+ T Consensus 78 ~vi~g-v~~~st~~ai~la~~a~~~Gad~---i~v~pP---------~~~~--~~~~~~~~f~~i~~a~~~~~Pi~---- 138 (313) T 3dz1_A 78 QVIVG-VSAPGFAAMRRLARLSMDAGAAG---VMIAPP---------PSLR--TDEQITTYFRQATEAIGDDVPWV---- 138 (313) T ss_dssp EEEEE-CCCSSHHHHHHHHHHHHHHTCSE---EEECCC---------TTCC--SHHHHHHHHHHHHHHHCTTSCEE---- T ss_pred CEEEE-CCCCCHHHHHHHHHHHHHCCCCE---EEEEEE---------EECC--CCHHHHHHHHHHHHHHCCCCCEE---- T ss_conf 68996-26510489999999998659856---753100---------0015--64477899999998512577368---- Q ss_pred CHHHHHHHHHHCCEEEECHHHC--CCHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 8999987650215788225762--89999999850-597799836777899999999999972 Q gi|254780669|r 124 TEQQCEAIADSVDILQIPALLC--RQTDLLTAAAQ-TGRVINVKKGQFLSPWEMHNILQKLHA 183 (301) Q Consensus 124 ~~~~~e~~~~~vDilQIgA~~~--rqtdLl~a~a~-t~kpV~iKkgq~~s~~e~~~a~eki~~ 183 (301) +.++|.+.- -..+++.++++ ....|-+|+.-+.....+......... T Consensus 139 -------------iYn~P~~~g~~ls~~~~~~L~~~~~nvi~~k~~s~~~~~~~~~l~~~~~~ 188 (313) T 3dz1_A 139 -------------LQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHEDWPGLEKITTLRGFQKD 188 (313) T ss_dssp -------------EEECHHHHCCCCCHHHHHHHHHHCSSEEEEEECCSSCHHHHHHHHHHHHH T ss_pred -------------EECCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC T ss_conf -------------74376425767769999999840887489984788669999999985300 No 118 >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Probab=64.23 E-value=7.6 Score=18.44 Aligned_cols=90 Identities=10% Similarity=0.197 Sum_probs=45.0 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCH Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665287688522889 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTE 125 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~ 125 (301) .+|+| ++-.|.+...+.|+..++.|.+.. .+.=| +.|. +..++-.++++++.+..++|++ T Consensus 83 ~vi~g-v~~~s~~~~i~~a~~a~~~Gad~i--~v~pP----------~~~~-~~~~~i~~~~~~i~~~~~~pi~------ 142 (301) T 1xky_A 83 PVIAG-TGSNNTHASIDLTKKATEVGVDAV--MLVAP----------YYNK-PSQEGMYQHFKAIAESTPLPVM------ 142 (301) T ss_dssp CEEEE-CCCSCHHHHHHHHHHHHHTTCSEE--EEECC----------CSSC-CCHHHHHHHHHHHHHTCSSCEE------ T ss_pred CEEEE-ECCHHHHHHHHHHHHHHHCCCCEE--EECCC----------CCCC-CCHHHHHHHHHHHHHCCCCCEE------ T ss_conf 76887-273669999999999997599999--97899----------7899-8999999999999851899789------ Q ss_pred HHHHHHHHHCCEEEECHHH--CCCHHHHHHHHHCCCEEEEECC Q ss_conf 9998765021578822576--2899999998505977998367 Q gi|254780669|r 126 QQCEAIADSVDILQIPALL--CRQTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 126 ~~~e~~~~~vDilQIgA~~--~rqtdLl~a~a~t~kpV~iKkg 166 (301) +...|.+. ....+++..+++....|-+|.. T Consensus 143 -----------lYn~P~~~g~~~~~~~~~~l~~~pnvvgiK~~ 174 (301) T 1xky_A 143 -----------LYNVPGRSIVQISVDTVVRLSEIENIVAIKDA 174 (301) T ss_dssp -----------EEECHHHHSSCCCHHHHHHHHTSTTEEEEEEC T ss_pred -----------EEECCCCCCCCCCHHHHHHHCCCCCEEEEECC T ss_conf -----------99687633558799999985338998998658 No 119 >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Probab=63.97 E-value=7.7 Score=18.40 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHC--CCHHHHHHHHHCCCEEEEECC Q ss_conf 248889998866528768852288999987650215788225762--899999998505977998367 Q gi|254780669|r 101 KKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLC--RQTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 101 e~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~--rqtdLl~a~a~t~kpV~iKkg 166 (301) +.-..+++++.+..++|++- .++|.+.- -..+++.++++....+-+|-. T Consensus 146 ~~i~~~f~~ia~~~~~Piii-----------------Yn~P~~~g~~l~~~~l~~L~~~pnvvgiK~~ 196 (332) T 2r8w_A 146 EEAYHHFAAVAGATALPLAI-----------------YNNPTTTRFTFSDELLVRLAYIPNIRAIKMP 196 (332) T ss_dssp HHHHHHHHHHHHHCSSCEEE-----------------ECCHHHHCCCCCHHHHHHHHTSTTEEEEEEC T ss_pred HHHHHHHHHHHHHCCCEEEE-----------------EECCCCCCCCCCHHHHHHHHCCCCEEEEEEC T ss_conf 89999999998603643899-----------------8156535888799999997078987999947 No 120 >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* Probab=63.54 E-value=7.9 Score=18.35 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=88.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC---CCHHHHHHHH Q ss_conf 9999999999999965533997066015576886663222456712488899988665287688522---8899998765 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDV---HTEQQCEAIA 132 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV---~~~~~~e~~~ 132 (301) +.|++.-+.+. .++...+.|.--|- .. -.|.| . .-..+...+.++.++||.--. .+.+++.... T Consensus 26 ~~e~~~avi~A----Aee~~sPvIlq~s~----~~--~~~~~--~-~~~~~~~~~a~~~~VpvalHlDH~~~~e~i~~ai 92 (305) T 1rvg_A 26 NMEFLQAVLEA----AEEQRSPVILALSE----GA--MKYGG--R-ALTLMAVELAKEARVPVAVHLDHGSSYESVLRAL 92 (305) T ss_dssp SHHHHHHHHHH----HHHTTCCEEEEEEH----HH--HHHHH--H-HHHHHHHHHHHHCSSCEEEEEEEECSHHHHHHHH T ss_pred CHHHHHHHHHH----HHHHCCCEEEECCC----CH--HHHCC--H-HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH T ss_conf 89999999999----99969999999874----57--76643--8-9999999987665999899745557988899998 Q ss_pred H-HCCEEEE-CHH-----HCCCHH-HHHHHHHCCCEE----------------EEECCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 0-2157882-257-----628999-999985059779----------------983677789999999999997258780 Q gi|254780669|r 133 D-SVDILQI-PAL-----LCRQTD-LLTAAAQTGRVI----------------NVKKGQFLSPWEMHNILQKLHAHGAKD 188 (301) Q Consensus 133 ~-~vDilQI-gA~-----~~rqtd-Ll~a~a~t~kpV----------------~iKkgq~~s~~e~~~a~eki~~~Gn~~ 188 (301) + ..+-+=| ++. |.+.|- .++-+...|..| --....+-+|++.... +..+|. + T Consensus 93 ~~GftSVMiDgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~Peea~~F---v~~Tgv-D 168 (305) T 1rvg_A 93 RAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIF---MERTGA-D 168 (305) T ss_dssp HTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHH---HHHHCC-S T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHCC-C T ss_conf 749987986499888899999999999986151887665022125655555666432456899999999---997588-7 Q ss_pred EEEEECCCCCC-CH---HHCCCCCCCHHHHH-HCCCEEECH-H--------HHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 89951465444-01---00000001068885-187168711-7--------77421223453212638899999999997 Q gi|254780669|r 189 VLFCERGTSFG-YN---TLVTDMRSIPIMTS-MGVPVIFDA-S--------HSVQQPGIHGNCSGGERQYIVPLAKAAVA 254 (301) Q Consensus 189 i~lcERG~~fg-y~---~lvvD~~~i~~lk~-~~~PVi~D~-S--------Hs~q~p~~~~~~~gG~r~~v~~la~aa~a 254 (301) .+..-=|+..| |. +-..|+.-+..+++ ...|.++-- | +..+.++..-+.+|=.. ..-+.++. T Consensus 169 ~LAvaiGn~HG~yk~~~~~~l~~~~l~~i~~~~~~PLvlHG~S~~~~~~~~~~~~~~~~lHG~sG~~~----e~i~~ai~ 244 (305) T 1rvg_A 169 YLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHP----EDIKKAIS 244 (305) T ss_dssp EEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCH----HHHHHHHH T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHH T ss_conf 68543022457668888866248899999616799878668977737777776304765577789999----99999998 Q ss_pred HCCCEEEEEE Q ss_conf 1898899983 Q gi|254780669|r 255 IGIAGIFLET 264 (301) Q Consensus 255 ~G~dGlfiE~ 264 (301) .|+.=+=+-| T Consensus 245 ~GI~KiNi~T 254 (305) T 1rvg_A 245 LGIAKINTDT 254 (305) T ss_dssp TTEEEEEECH T ss_pred CCCEEEEECH T ss_conf 6955999781 No 121 >1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Probab=61.22 E-value=8.6 Score=18.09 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=82.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE---------EC-- Q ss_conf 4999999999999999655339970660155768866632224567124888999886652876885---------22-- Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT---------DV-- 122 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T---------eV-- 122 (301) +.+.+.+-++|+...+.|... .+..+ .+-++++++.++.|+.- .+ T Consensus 19 m~~~~~~~~~A~a~~~~Ga~~--------------------v~~~~----~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~ 74 (223) T 1y0e_A 19 LHSSFIMSKMALAAYEGGAVG--------------------IRANT----KEDILAIKETVDLPVIGIVKRDYDHSDVFI 74 (223) T ss_dssp TCCHHHHHHHHHHHHHHTCSE--------------------EEEES----HHHHHHHHHHCCSCEEEECBCCCTTCCCCB T ss_pred CCCCHHHHHHHHHHHHCCCEE--------------------EECCC----HHHHHHHHHHCCCCEEEEEECCCCCCHHCC T ss_conf 778579999999999889969--------------------96589----788999998548864556631667822302 Q ss_pred -CCHHHHHHHH-HHCCEEEECHHHCCCH-----HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf -8899998765-0215788225762899-----99999850597799836777899999999999972587808995146 Q gi|254780669|r 123 -HTEQQCEAIA-DSVDILQIPALLCRQT-----DLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 123 -~~~~~~e~~~-~~vDilQIgA~~~rqt-----dLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG 195 (301) -...+..... ..+|.+.++......+ ++++........+.+-. .-.++++++. ..+.|.+-+...-.| T Consensus 75 ~~~~~~~~~~~~agad~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~a~~----~~~~g~d~i~~~~~~ 149 (223) T 1y0e_A 75 TATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA-DIATVEEAKN----AARLGFDYIGTTLHG 149 (223) T ss_dssp SCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEE-ECSSHHHHHH----HHHTTCSEEECTTTT T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEC-CCCCHHHHHH----HHHCCCCEEEECCCC T ss_conf 60299999999879999997545678816579999999887378715754-8799999999----997599969976778 Q ss_pred CC---CCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 54---440100000001068885-1871687117774212234532126388999999999971898899983 Q gi|254780669|r 196 TS---FGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 196 ~~---fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) .. .+-.....++..+..+++ ...|||.+- |-+. +.-++.++++|+||+++=+ T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~iPvia~G---------------GI~t--~ed~~~al~~GAdgV~vGs 205 (223) T 1y0e_A 150 YTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEG---------------NVIT--PDMYKRVMDLGVHCSVVGG 205 (223) T ss_dssp SSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEES---------------SCCS--HHHHHHHHHTTCSEEEECH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC---------------CCCC--HHHHHHHHHCCCCEEEECH T ss_conf 853356887655479999999842899789868---------------9899--9999999986999999842 No 122 >3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* Probab=60.76 E-value=8.8 Score=18.03 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=70.6 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 99988665287688522889999876502-15788225762899999998505977998367778999999999999725 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) -|.++=++-+.-++-.++++-++-.+.+. .+.+++.-+-|-.+-.. +..+.|= --..+.+++...+++|... T Consensus 52 kLr~LL~~~~~v~~~Ga~d~lsA~~~~~aGf~aiYvSG~~vaA~~~~---a~~g~PD----~gl~~~~ev~~~v~~I~~a 124 (433) T 3eol_A 52 RLWKLIHEEDFVNALGALSGNQAMQMVRAGLKAIYLSGWQVAADANT---ASAMYPD----QSLYPANAGPELAKRINRT 124 (433) T ss_dssp HHHHHHHHSSCEEEEBCSSHHHHHHHHHTTCCCEEEC------------------------------CHHHHHHHHHHHH T ss_pred HHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHC---CCCCCCC----CCCCCHHHHHHHHHHHHHH T ss_conf 99999717998882476788999999980998899652999744330---3678787----6734366699999999999 Q ss_pred CC-C-CEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf 87-8-089951465444010000000106888518716871177742122345321263889999999999718988999 Q gi|254780669|r 185 GA-K-DVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFL 262 (301) Q Consensus 185 Gn-~-~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfi 262 (301) =. . ++--.||.. .....+.+|||.|.-..- |....|-.+.|.-+.+|+.|+.| T Consensus 125 ~~~~d~~~~~e~~~--------------~~~~~~~~PiIaDaDtGf-----------G~~~nv~rtvk~~~~AGaAgihi 179 (433) T 3eol_A 125 LQRADQIETAEGKG--------------LSVDTWFAPIVADAEAGF-----------GDPLDAFEIMKAYIEAGAAGVHF 179 (433) T ss_dssp HHHHHHHHHHTTSC--------------CSSSCSCCCEEEECC--------------CCHHHHHHHHHHHHHHTCSEEEE T ss_pred HHHHHHHHHHHHCC--------------CCCCCCCCCEEEECCCCC-----------CHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999888876226--------------765446776377568887-----------51899999999999739858987 Q ss_pred EECCCHH--HCCCCCCCCCCHHHHHHHHHH Q ss_conf 8369833--479782018688999999999 Q gi|254780669|r 263 ETHQDPD--NAPSDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 263 E~Hp~P~--~AlsD~~q~l~l~~l~~ll~~ 290 (301) |=.--|+ ..--+|.+-++.+++-.-++- T Consensus 180 EDQv~~kkkCGH~~gK~lv~~~E~i~ki~A 209 (433) T 3eol_A 180 EDQLASEKKCGHLGGKVLIPTAAHIRNLNA 209 (433) T ss_dssp ESBCC---------CCEECCHHHHHHHHHH T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 337784221345577732689999999999 No 123 >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondrial, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 Probab=60.58 E-value=8.9 Score=18.01 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=32.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 97799836777899999999999972587808995146 Q gi|254780669|r 158 GRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 158 ~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG 195 (301) ..||.+|=...++..+...+++-+.+.|..-++++--- T Consensus 297 ~pPi~vKlsPDl~~~~i~~i~~~~~~~g~dgii~~NTt 334 (443) T 1tv5_A 297 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTT 334 (443) T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCB T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEECCC T ss_conf 78559986899862567889998886254599971676 No 124 >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Probab=60.55 E-value=8.9 Score=18.01 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=58.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) ..+|+| |+-.|.+...+.|+..++.|.+.. .+.=| +.+. ...++-.++++++-+..++|++- T Consensus 71 ~~vi~g-v~~~s~~~~i~~a~~a~~~Gad~i--~v~pP----------~~~~-~~~~~i~~~f~~i~~~~~~pi~i---- 132 (291) T 3a5f_A 71 IPVIAG-TGSNNTAASIAMSKWAESIGVDGL--LVITP----------YYNK-TTQKGLVKHFKAVSDAVSTPIII---- 132 (291) T ss_dssp SCEEEE-CCCSSHHHHHHHHHHHHHTTCSEE--EEECC----------CSSC-CCHHHHHHHC-CTGGGCCSCEEE---- T ss_pred CEEEEE-ECCCCHHHHHHHHHHHHHCCCCEE--EECCC----------CCCC-CCHHHHHHHHHHHHHHCCCCEEE---- T ss_conf 538987-678519999999999997089979--98188----------7788-99999999999998513798899---- Q ss_pred HHHHHHHHHHCCEEEECHHHC--CCHHHHHHHHHCCCEEEEECCC Q ss_conf 999987650215788225762--8999999985059779983677 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLC--RQTDLLTAAAQTGRVINVKKGQ 167 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~--rqtdLl~a~a~t~kpV~iKkgq 167 (301) ..+|.+.- -..+++..+++....+-+|..- T Consensus 133 -------------Yn~P~~~~~~~~~~~l~~l~~~~~i~~~K~~~ 164 (291) T 3a5f_A 133 -------------YNVPGRTGLNITPGTLKELCEDKNIVAVXEAS 164 (291) T ss_dssp -------------EECHHHHSCCCCHHHHHHHTTSTTEEEEEECS T ss_pred -------------EECCCCCCCCCCHHHHHHHHCCCCCEEEEECC T ss_conf -------------95787457777788888886189811453378 No 125 >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Probab=60.46 E-value=8.9 Score=18.00 Aligned_cols=178 Identities=11% Similarity=0.103 Sum_probs=96.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEEEC Q ss_conf 06999548634999999999999999655339970660155768866632224567124888999886652-87688522 Q gi|254780669|r 44 RFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILTDV 122 (301) Q Consensus 44 ~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~TeV 122 (301) |.+++| |=+.+.+..+++++.+.. . +. ++|-.|+- . +..|+++.+++++.+ +.++.-|. T Consensus 7 ~~l~vA--lD~~~~~~~~~~~~~~~~---~--vd-~ikig~~l------~------~~~G~~~i~~l~~~~~~~~i~~D~ 66 (218) T 3jr2_A 7 PMIQIA--LDQTNLTDAVAVASNVAS---Y--VD-VIEVGTIL------A------FAEGMKAVSTLRHNHPNHILVCDM 66 (218) T ss_dssp CEEEEE--ECCSSHHHHHHHHHHHGG---G--CS-EEEECHHH------H------HHHTTHHHHHHHHHCTTSEEEEEE T ss_pred CCEEEE--ECCCCHHHHHHHHHHCCC---C--CC-EEEEEEEC------H------HHCCHHHHHHHHHHCCCCEEEEEE T ss_conf 860898--348999999999996388---7--65-89945642------6------535999999999757897399998 Q ss_pred CC---HHHH-HHHHH-HCCEEEECHHHCCC--HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 88---9999-87650-21578822576289--999999850597799836777899999999999972587808995146 Q gi|254780669|r 123 HT---EQQC-EAIAD-SVDILQIPALLCRQ--TDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 123 ~~---~~~~-e~~~~-~vDilQIgA~~~rq--tdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG 195 (301) +- +..+ +.+++ .+|++=+-+.-... ..+++++.+.+....+---...++++. ..+...|...+ +.+++ T Consensus 67 K~~Di~~~~~~~~~~~gad~itvh~~~~~~~l~~~~~~~~~~g~~~~v~l~~~~~~~~~----~~~~~~~~~~~-~~~~~ 141 (218) T 3jr2_A 67 KTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDA----KAWVDLGITQA-IYHRS 141 (218) T ss_dssp EECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHH----HHHHHTTCCEE-EEECC T ss_pred ECCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH----HHHHHCCCHHH-HHHHH T ss_conf 51457277889988744989999503454789999998764188437842788999999----99886482286-99972 Q ss_pred CCC---CCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 544---401000000010688851871687117774212234532126388999999999971898899983 Q gi|254780669|r 196 TSF---GYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 196 ~~f---gy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) ..- ++..-..++..+...+..+.++.+|+.=. .+ -.+.++.+|+|++.+-. T Consensus 142 ~~~~~~~~~~~~~~l~~i~~~~~~~~~i~v~gGi~--------------~~----~~~~~~~~GaD~iVvGr 195 (218) T 3jr2_A 142 RDAELAGIGWTTDDLDKMRQLSALGIELSITGGIV--------------PE----DIYLFEGIKTKTFIAGR 195 (218) T ss_dssp HHHHHHTCCSCHHHHHHHHHHHHTTCEEEEESSCC--------------GG----GGGGGTTSCEEEEEESG T ss_pred HCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCC--------------CC----CHHHHHHCCCCEEEECH T ss_conf 44244773668999999999848997078679968--------------25----79999984999999883 No 126 >3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} Probab=59.50 E-value=9.2 Score=17.89 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=77.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEE-ECCCHHHHHHHH Q ss_conf 999999999999999655339970660155768866632224567124888999886652-876885-228899998765 Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILT-DVHTEQQCEAIA 132 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~T-eV~~~~~~e~~~ 132 (301) .+.+.+..+++.|.+.|.+.. . -++|.+ .+++.+++++++| ++-|-. -|.+.+|++.+. T Consensus 22 ~~~~~~~~i~~aL~~~Gi~~i---------E-------itl~~~---~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~ 82 (217) T 3lab_A 22 DDLVHAIPMAKALVAGGVHLL---------E-------VTLRTE---AGLAAISAIKKAVPEAIVGAGTVCTADDFQKAI 82 (217) T ss_dssp SCGGGHHHHHHHHHHTTCCEE---------E-------EETTST---THHHHHHHHHHHCTTSEEEEECCCSHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEE---------E-------EECCCC---HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH T ss_conf 999999999999998799889---------9-------968990---699999999986899759999624279999999 Q ss_pred H-HCCEEEECHHHCCCHHHHHHHHHCCCE-----EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 0-215788225762899999998505977-----99836777899999999999972587808995 Q gi|254780669|r 133 D-SVDILQIPALLCRQTDLLTAAAQTGRV-----INVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 133 ~-~vDilQIgA~~~rqtdLl~a~a~t~kp-----V~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) + .++.+=-|. -+.++++++.+.+-| +.+ +=.+||.|...|.+ .|.+-+-+= T Consensus 83 ~aGA~FivsP~---~~~~v~~~a~~~~ip~~~~~~~i--PG~~TptEi~~A~~----~G~~~vK~F 139 (217) T 3lab_A 83 DAGAQFIVSPG---LTPELIEKAKQVKLDGQWQGVFL--PGVATASEVMIAAQ----AGITQLKCF 139 (217) T ss_dssp HHTCSEEEESS---CCHHHHHHHHHHHHHCSCCCEEE--EEECSHHHHHHHHH----TTCCEEEET T ss_pred HHCCCEEECCC---CCHHHHHHHHHCCCCCCCCCCCC--CCCCCHHHHHHHHH----CCCCEEEEC T ss_conf 72788877688---99999999998498644575452--78588679999997----699959964 No 127 >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Probab=59.30 E-value=9.3 Score=17.87 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=36.1 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEE Q ss_conf 699954863499999999999999965533997066015576886663222456712488899988665287688 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPIL 119 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~ 119 (301) ..+|+| ++-.|.+...+.|+..++.|.+.. .+.=|.| +. +..++-.++++++.+..++|++ T Consensus 70 ~~vi~g-v~~~s~~~~i~~a~~a~~~Gad~v--~v~pP~~----------~~-~s~~~l~~~~~~v~~~~~~pi~ 130 (292) T 2vc6_A 70 VPVIAG-AGSNSTAEAIAFVRHAQNAGADGV--LIVSPYY----------NK-PTQEGIYQHFKAIDAASTIPII 130 (292) T ss_dssp SCBEEE-CCCSSHHHHHHHHHHHHHTTCSEE--EEECCCS----------SC-CCHHHHHHHHHHHHHHCSSCEE T ss_pred CCEEEE-CCCHHHHHHHHHHHHHHHCCCCEE--EECCCCC----------CC-CCHHHHHHHHHHHHHHCCCCEE T ss_conf 618973-684379999999999997699999--9879988----------99-8999999999999830578789 No 128 >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Probab=59.22 E-value=9.3 Score=17.86 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=60.9 Q ss_pred HHHHHHHHHCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHH Q ss_conf 99999985059-7799836777899999999999972587808995146544401000000010688-851871687117 Q gi|254780669|r 148 TDLLTAAAQTG-RVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDAS 225 (301) Q Consensus 148 tdLl~a~a~t~-kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~S 225 (301) +.|+....+.. ..+..-- ...++++..+ + ..|.+++.||-=+..... ++|+..+..+ |+.+.++|+|-| T Consensus 105 ~~l~~~~~~~~g~~~~~~d--~~d~~~~~~~---~--~~~t~li~~EspsNP~l~--v~Di~~i~~ia~~~g~~~vVDnT 175 (386) T 1cs1_A 105 YRLFDSLAKRGCYRVLFVD--QGDEQALRAA---L--AEKPKLVLVESPSNPLLR--VVDIAKICHLAREVGAVSVVDNT 175 (386) T ss_dssp HHHHHHHHTTTSCEEEEEC--TTCHHHHHHH---H--HTCCSEEEEECSCTTTCC--CCCHHHHHHHHHHTTCEEEEECT T ss_pred HHHHHHHCCCCEEEEEEEC--CCCHHHHHHH---C--CCCCEEEEECCCCCCCCC--CCCHHHHHHHHHHCCCEEEEECC T ss_conf 8998521335548988512--7999999975---2--778619996578897542--35689999889874986999788 Q ss_pred HH---HHHC----------------CCCCCCCCC-----CHHHHHHHHHHHHHHCCCEEEEEECCCHHHCC Q ss_conf 77---4212----------------234532126-----38899999999997189889998369833479 Q gi|254780669|r 226 HS---VQQP----------------GIHGNCSGG-----ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAP 272 (301) Q Consensus 226 Hs---~q~p----------------~~~~~~~gG-----~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~Al 272 (301) -+ .|+| +|.++..+| +.++...+.......|. ++.|.+|+ T Consensus 176 ~atP~~~~Pl~~GaDivv~S~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~-------~~~p~da~ 239 (386) T 1cs1_A 176 FLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV-------TGGAFDSY 239 (386) T ss_dssp TTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC-------BCCHHHHH T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-------CCCCHHHH T ss_conf 55824355411488899971550126787655676456846665444444312466-------67705389 No 129 >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} Probab=59.22 E-value=9.3 Score=17.86 Aligned_cols=158 Identities=20% Similarity=0.333 Sum_probs=87.5 Q ss_pred CCCHHHHHHHHHHHHHH---CCEEEEECCCHHHHHHHHH-H-CCEEEECHHHCCCHHHHHHHHHCC---CE---EEEEC- Q ss_conf 67124888999886652---8768852288999987650-2-157882257628999999985059---77---99836- Q gi|254780669|r 98 VGLKKGREIFRDLKKKY---GFPILTDVHTEQQCEAIAD-S-VDILQIPALLCRQTDLLTAAAQTG---RV---INVKK- 165 (301) Q Consensus 98 ~Gle~gL~il~e~k~~~---glpv~TeV~~~~~~e~~~~-~-vDilQIgA~~~rqtdLl~a~a~t~---kp---V~iKk- 165 (301) |+++ |+++++++++.. -+-++|-..+.+.+..+-+ . .|.+.=| ++..+.+|+.++++.- +. +..|| T Consensus 36 P~~~-G~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~a~~~Ga~~y~~Kp-~~~~~~~li~~~~~~~~~q~~v~~~~~k~~ 113 (237) T 3cwo_X 36 PEMN-GIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT-AAVENPSLITQIAQTFGSQAVVVAIDAKRV 113 (237) T ss_dssp TTSS-HHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH-HHHHCTHHHHHHHHHHTGGGEEEEEEEEES T ss_pred CCCC-HHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC-CCCCCHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 9989-99999999986899849999816513232478845987699898-563677999999999865038999987642 Q ss_pred -CCC---------CCHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHC Q ss_conf -777---------8999999999999725878089951---4654440100000001068885-1871687117774212 Q gi|254780669|r 166 -GQF---------LSPWEMHNILQKLHAHGAKDVLFCE---RGTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQP 231 (301) Q Consensus 166 -gq~---------~s~~e~~~a~eki~~~Gn~~i~lcE---RG~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p 231 (301) +++ .+..++...+.++...|..++.++. -||.-|+ |++.+....+ ...|++.-..= T Consensus 114 ~~~~~~~~~~g~~~t~~~~~~~i~~~~~~g~~ei~v~~i~~dGt~kg~-----d~~~i~~~s~~~~~P~i~~gG~----- 183 (237) T 3cwo_X 114 DGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-----DTEMIRFVRPLTTLPIIASGGA----- 183 (237) T ss_dssp SSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCC-----CHHHHHHHGGGCCSCEEEESCC----- T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-----CHHHHHHHHHHCCCCEEEECCC----- T ss_conf 477423224786633198999999998258856899843598767854-----3798887765110214765666----- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE--CCCHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 234532126388999999999971898899983--6983347978201868899999999 Q gi|254780669|r 232 GIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET--HQDPDNAPSDGPNMINIKDLPKLLS 289 (301) Q Consensus 232 ~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~--Hp~P~~AlsD~~q~l~l~~l~~ll~ 289 (301) +..+-+. .+..+|++|.++.. |- +.+++.++++.|. T Consensus 184 --------~~~e~l~----e~~~~g~~a~~~gs~~~~----------~~~~i~e~k~~L~ 221 (237) T 3cwo_X 184 --------GKMEHFL----EAFLAGADAALAASVFHF----------REIDVRELKEYLK 221 (237) T ss_dssp --------CSHHHHH----HHHHHTCSEEEESHHHHT----------TSSCHHHHHHHHH T ss_pred --------CCHHHHH----HHHHCCCCEEEEHHHHHC----------CCCCHHHHHHHHH T ss_conf --------8899999----998579815644015643----------8988999999999 No 130 >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Probab=58.50 E-value=9.6 Score=17.78 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=44.7 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHH Q ss_conf 95486349999999999999996553399706601557688666322245671248889998866528768852288999 Q gi|254780669|r 48 IAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQ 127 (301) Q Consensus 48 IAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~ 127 (301) |+|-.. .|-+.+.+.|+..++.|.+. ...=| |+.|.....+.-.++++++.+..++|++-= +.|.- T Consensus 68 i~gv~~-~st~~~i~~a~~a~~~G~d~---i~~~p---------p~~~~~~~~~~i~~~~~~ia~~~~~pi~lY-n~P~~ 133 (286) T 2r91_A 68 IVQVAS-LNADEAIALAKYAESRGAEA---VASLP---------PYYFPRLSERQIAKYFRDLCSAVSIPVFLY-NYPAA 133 (286) T ss_dssp EEECCC-SSHHHHHHHHHHHHHTTCSE---EEECC---------SCSSTTCCHHHHHHHHHHHHHHCSSCEEEE-ECHHH T ss_pred EECCCC-CCHHHHHHHHHHHHHCCCCE---EEECC---------CCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCC T ss_conf 211124-32589999999999869998---98669---------852346888999999998762447437763-48766 Q ss_pred HHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECC Q ss_conf 987650215788225762899999998505977998367 Q gi|254780669|r 128 CEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 128 ~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkg 166 (301) . .+++ ..+++.++ ...+.+|-. T Consensus 134 ---~--g~~l---------~~~l~~~l---~~i~giK~~ 155 (286) T 2r91_A 134 ---V--GRDV---------DARAAKEL---GCIRGVKDT 155 (286) T ss_dssp ---H--SSCC---------CHHHHHHH---SCEEEEEEC T ss_pred ---C--CCCC---------HHHHHHHH---CCEEEEEEC T ss_conf ---1--3030---------56777876---664379848 No 131 >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str} Probab=57.99 E-value=9.8 Score=17.73 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=8.7 Q ss_pred EEECHHH--CCCHHHHHHHHH Q ss_conf 8822576--289999999850 Q gi|254780669|r 138 LQIPALL--CRQTDLLTAAAQ 156 (301) Q Consensus 138 lQIgA~~--~rqtdLl~a~a~ 156 (301) .++|.+. --..+++..+++ T Consensus 139 yn~p~~tg~~l~~~~l~~L~~ 159 (294) T 3b4u_A 139 YNIPSVTMVTLSVELVGRLKA 159 (294) T ss_dssp EECHHHHSCCCCHHHHHHHHH T ss_pred CCCCCCCCEEECHHHHHHHHH T ss_conf 688742426417999999997 No 132 >1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} SCOP: c.1.21.1 PDB: 1ad4_A* Probab=57.94 E-value=9.8 Score=17.72 Aligned_cols=205 Identities=14% Similarity=0.147 Sum_probs=122.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH Q ss_conf 999999999999999655339-9706601557688666322245671248889998866528768852288999987650 Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIAD 133 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~ 133 (301) -+.+.+++-|+.+.+-|+++. +|+- +|-+.+.+-|. ..+ ++.-+.+++.++ ++++++--|-..++-++.+.+ T Consensus 23 ~~~~~a~~~~~~~i~~GAdiIDIGae--STrPga~~i~~--eeE--~~Rl~pvl~~i~-~~~~~iSIDT~~~eVa~~al~ 95 (266) T 1ad1_A 23 NNVESAVTRVKAMMDEGADIIDVGGV--STRPGHEMITV--EEE--LNRVLPVVEAIV-GFDVKISVDTFRSEVAEACLK 95 (266) T ss_dssp CSHHHHHHHHHHHHHTTCSEEEEESC--CCSTTCCCCCH--HHH--HHHHHHHHHHHT-TSSSEEEEECSCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCCCCH--HHH--HHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHH T ss_conf 89999999999999879989997986--18999986699--999--988402455541-368624460188999999998 Q ss_pred -HCCEEE-ECHHHCCCHHHHHHHHHCCCEEEEEC----CCCCCH-HH----HHHHHHHHHHCCCC-CEEEEECCCCCCCH Q ss_conf -215788-22576289999999850597799836----777899-99----99999999725878-08995146544401 Q gi|254780669|r 134 -SVDILQ-IPALLCRQTDLLTAAAQTGRVINVKK----GQFLSP-WE----MHNILQKLHAHGAK-DVLFCERGTSFGYN 201 (301) Q Consensus 134 -~vDilQ-IgA~~~rqtdLl~a~a~t~kpV~iKk----gq~~s~-~e----~~~a~eki~~~Gn~-~i~lcERG~~fgy~ 201 (301) .+||+- |-+. ....++++.+++.+.|+.+-- .+...+ .+ +..-.++....|-. +-|+..=|+-||.+ T Consensus 96 ~G~~iINDVsgg-~~D~~m~~~va~~~~~~ilmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt 174 (266) T 1ad1_A 96 LGVDIINDQWAG-LYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKT 174 (266) T ss_dssp TTCCEEEETTTT-SSCTHHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCC T ss_pred CCCCEEEECCCC-CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCEEECCCCCCCCC T ss_conf 799199950346-6670289999714998687207866554310001335789999999975986313886476366767 Q ss_pred HH--CCCCCCCHHHHHHCCCEEECHHHHHHHCCCCC-CCCCCCHHHHH-HHHHHHHHHCCCEEEEEECCCHH Q ss_conf 00--00000106888518716871177742122345-32126388999-99999997189889998369833 Q gi|254780669|r 202 TL--VTDMRSIPIMTSMGVPVIFDASHSVQQPGIHG-NCSGGERQYIV-PLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 202 ~l--vvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~-~~~gG~r~~v~-~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) .- .-=++++..++.+++||++-.|.=-..-.-.+ ..+.-.|.... ..+..|+..|++ ++-||.-.+ T Consensus 175 ~~~n~~ll~~l~~~~~~~~PiLvG~SRKsfi~~l~g~~~~~~~r~~~tla~~~~a~~~Ga~--iiRvHDV~~ 244 (266) T 1ad1_A 175 RNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVR--AVRVHNVEL 244 (266) T ss_dssp HHHHHHHHHCHHHHHTTCSCBEECCTTSHHHHTTSSSCCCGGGGHHHHHHHHHHHHHHTCC--EEEESCHHH T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--EEEECCHHH T ss_conf 2104999997999724798679962478899997568998787428999999999987999--999499799 No 133 >3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural genomics of infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A Probab=57.59 E-value=9.9 Score=17.68 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=44.2 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHC------------CCHHHHHHHHH----CCCEEEEE--CCC Q ss_conf 9988665287688522889999876502-15788225762------------89999999850----59779983--677 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLC------------RQTDLLTAAAQ----TGRVINVK--KGQ 167 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~------------rqtdLl~a~a~----t~kpV~iK--kgq 167 (301) |+++-+.-+.-++..++|+-.+..+.+. .|.+|++.+-. -.++++..+.+ ++.||.+- .|+ T Consensus 21 lr~ll~~~~~l~~p~~~D~~SA~i~e~aGf~ai~~ss~~~aas~G~pD~~ll~~~e~~~~~~~I~~~~~iPviaD~d~Gy 100 (305) T 3ih1_A 21 FRALVEANEILQIPGAHDAMAALVARNTGFLALYLSGAAYTASKGLPDLGIVTSTEVAERARDLVRATDLPVLVDIDTGF 100 (305) T ss_dssp HHHHHHSSSCEEEEBCSSHHHHHHHHHTTCSCEEECHHHHHHHHTCCSSSCSCHHHHHHHHHHHHHHHCCCEEEECTTCS T ss_pred HHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 99986279978955888899999999859999995689999977999988899999999999888743887525110257 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 789999999999997258780899514 Q gi|254780669|r 168 FLSPWEMHNILQKLHAHGAKDVLFCER 194 (301) Q Consensus 168 ~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301) . ++.+....+..+...|.--|.+-.. T Consensus 101 G-~~~~~~~tv~~l~~aGvagi~IEDq 126 (305) T 3ih1_A 101 G-GVLNVARTAVEMVEAKVAAVQIEDQ 126 (305) T ss_dssp S-SHHHHHHHHHHHHHTTCSEEEEECB T ss_pred C-CHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 8-4689999999999705866785335 No 134 >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Probab=57.30 E-value=10 Score=17.65 Aligned_cols=185 Identities=19% Similarity=0.275 Sum_probs=114.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--ECCCHHHHHHHHH-HCC Q ss_conf 9999999999655339970660155768866632224567124888999886652876885--2288999987650-215 Q gi|254780669|r 60 AFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DVHTEQQCEAIAD-SVD 136 (301) Q Consensus 60 ~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV~~~~~~e~~~~-~vD 136 (301) -.++|+.+.+.+.+. ++=--.|.+ .+ +...-+++++++.+...+|+.- =|...++++.+.+ .+| T Consensus 32 P~~~a~~~~~~g~de----i~ivDld~~--------~~-~~~~~~~~i~~i~~~~~~pi~~gGGir~~e~~~~~l~~Ga~ 98 (253) T 1thf_D 32 PVELGKFYSEIGIDE----LVFLDITAS--------VE-KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGAD 98 (253) T ss_dssp HHHHHHHHHHTTCCE----EEEEESSCS--------SS-HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCS T ss_pred HHHHHHHHHHCCCCE----EEEEECCCC--------CC-CCHHHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHCCCC T ss_conf 999999999869988----999841243--------34-64338999999997359975874557522217889874999 Q ss_pred EEEECHHHCCCHHHHHHHHHC-C--CEE---EEEC--C------------CCCCHHHHHHHHHHHHHCCCCCEEEEEC-- Q ss_conf 788225762899999998505-9--779---9836--7------------7789999999999997258780899514-- Q gi|254780669|r 137 ILQIPALLCRQTDLLTAAAQT-G--RVI---NVKK--G------------QFLSPWEMHNILQKLHAHGAKDVLFCER-- 194 (301) Q Consensus 137 ilQIgA~~~rqtdLl~a~a~t-~--kpV---~iKk--g------------q~~s~~e~~~a~eki~~~Gn~~i~lcER-- 194 (301) =+=||+...+|.++++++++. | ..| .+|+ + ...++.||+ +++...|...++++.= T Consensus 99 kVvigs~~~~~~~~l~~~~~~~G~~~iv~~id~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~g~~eiiltdI~~ 175 (253) T 1thf_D 99 KVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWV---VEVEKRGAGEILLTSIDR 175 (253) T ss_dssp EEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHH---HHHHHTTCSEEEEEETTT T ss_pred EEEECHHHHHCHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHH---HHHHHCCCCEEEEEEECC T ss_conf 99988478629799999999849844699877872278345554114413787699999---998863799799997524 Q ss_pred -CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCC Q ss_conf -654440100000001068885-187168711777421223453212638899999999997189889998369833479 Q gi|254780669|r 195 -GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAP 272 (301) Q Consensus 195 -G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~Al 272 (301) |+.-|++. .-+..+++ ...|++. +||-+.+ ..+.+ ....|++|..+-. |+ T Consensus 176 dGt~~G~d~-----~~l~~i~~~~~~pii~---------------~GGv~s~-~dl~~-l~~~g~~gvivgs------al 227 (253) T 1thf_D 176 DGTKSGYDT-----EMIRFVRPLTTLPIIA---------------SGGAGKM-EHFLE-AFLAGADAALAAS------VF 227 (253) T ss_dssp TTSCSCCCH-----HHHHHHGGGCCSCEEE---------------ESCCCSH-HHHHH-HHHTTCSEEEESH------HH T ss_pred CCCCCCCCH-----HHHHHHHHCCCCCEEE---------------ECCCCCH-HHHHH-HHHCCCCEEEEEH------HH T ss_conf 576577540-----1334555247987898---------------4698999-99999-9978998999804------87 Q ss_pred CCCCCCCCHHHHHHHHHH Q ss_conf 782018688999999999 Q gi|254780669|r 273 SDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 273 sD~~q~l~l~~l~~ll~~ 290 (301) .. +.+++.++.+.+++ T Consensus 228 ~~--~~~~~~~lk~~l~~ 243 (253) T 1thf_D 228 HF--REIDVRELKEYLKK 243 (253) T ss_dssp HT--TCSCHHHHHHHHHH T ss_pred HC--CCCCHHHHHHHHHH T ss_conf 76--99999999999998 No 135 >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Probab=56.40 E-value=10 Score=17.56 Aligned_cols=182 Identities=16% Similarity=0.201 Sum_probs=91.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC--CCHHHHHHH Q ss_conf 499999999999999965533997066015576886663222456712488899988665287688522--889999876 Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDV--HTEQQCEAI 131 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV--~~~~~~e~~ 131 (301) +-|.|++++.|+.+++.|.. ...+-.+.. +.+ ...++.-+++++.+++ ..+.+.+.+ .+.++++.+ T Consensus 98 l~s~eeI~e~a~~~~~~G~~---~i~l~~g~~------~~~--~~~~~~~~~~i~~i~~-~~~~i~~~~~~l~~e~l~~L 165 (369) T 1r30_A 98 LMEVEQVLESARKAKAAGST---RFCMGAAWK------NPH--ERDMPYLEQMVQGVKA-MGLEACMTLGTLSESQAQRL 165 (369) T ss_dssp CCCHHHHHHHHHHHHHTTCS---EEEEEECCS------SCC--TTTHHHHHHHHHHHHH-TTSEEEEECSSCCHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCE---EEEEEECCC------CCC--CCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHH T ss_conf 68879999999989875997---999995788------887--0279999999998520-47547651267989999999 Q ss_pred HHH-CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCC-CC Q ss_conf 502-1578822576289999999850597799836777899999999999972587808995146544401000000-01 Q gi|254780669|r 132 ADS-VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDM-RS 209 (301) Q Consensus 132 ~~~-vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~-~~ 209 (301) ++. +|.+-++--. .-++..... .-.+.++|+.+.+.....|-+ .| -|..||...-.-|. .. T Consensus 166 k~aG~~~~~~~lEt--~~~~~~~~~-----------~~~~~~~rl~~l~~a~~~Gi~---~~-~g~i~G~gEt~ed~i~~ 228 (369) T 1r30_A 166 ANAGLDYYNHNLDT--SPEFYGNII-----------TTRTYQERLDTLEKVRDAGIK---VC-SGGIVGLGETVKDRAGL 228 (369) T ss_dssp HHHCCCEEECCCBS--CHHHHHHHC-----------CSSCHHHHHHHHHHHHHHHCE---EE-CCEEECSSCCHHHHHHH T ss_pred HHHCCCEECCCHHH--HHHHHCCCC-----------CCCCHHHHHHHHHHHHHHCCC---CE-EEEEECCCCCHHHHHHH T ss_conf 85187888343424--555421343-----------458799999999999982897---35-88897889999999999 Q ss_pred CHHHHHHC-----CCE-EECH-------------------HHHHH---HCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 06888518-----716-8711-------------------77742---12234532126388999999999971898899 Q gi|254780669|r 210 IPIMTSMG-----VPV-IFDA-------------------SHSVQ---QPGIHGNCSGGERQYIVPLAKAAVAIGIAGIF 261 (301) Q Consensus 210 i~~lk~~~-----~PV-i~D~-------------------SHs~q---~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlf 261 (301) +..+++.. .|+ .+-| +.++- +|...-..++|+-.+-+.+...++.+|+|++| T Consensus 229 l~~Lr~L~~~~~~v~~~~f~P~~gT~l~~~~~~~~~e~lr~iAi~Rl~lP~~~i~i~~~r~~~~~~~~~~~l~aGaN~im 308 (369) T 1r30_A 229 LLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIF 308 (369) T ss_dssp HHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHHHHHHHHHTCCEEE T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCHHHHHHHHHHCCCEEE T ss_conf 99998668998665550046689997666789999999999999999778864388611554187789999971895898 Q ss_pred EEE Q ss_conf 983 Q gi|254780669|r 262 LET 264 (301) Q Consensus 262 iE~ 264 (301) ++. T Consensus 309 ~g~ 311 (369) T 1r30_A 309 YGC 311 (369) T ss_dssp CSS T ss_pred ECC T ss_conf 668 No 136 >3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3itc_A* 3k5x_A* Probab=55.67 E-value=11 Score=17.48 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=8.1 Q ss_pred HHHHHHCCCCCEEEEECC Q ss_conf 999972587808995146 Q gi|254780669|r 178 LQKLHAHGAKDVLFCERG 195 (301) Q Consensus 178 ~eki~~~Gn~~i~lcERG 195 (301) ++.+...|-.-+.||.-. T Consensus 135 l~~~y~lGvR~i~Lt~n~ 152 (400) T 3id7_A 135 LRALYALGVRYMTLTHND 152 (400) T ss_dssp HHHHHHTTEEEEESCSSS T ss_pred HHHHHHHCCEEEEECCCC T ss_conf 999997185699940468 No 137 >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Probab=55.55 E-value=11 Score=17.47 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=56.8 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) ..+|+| |+-.|.+...+.|+..++.|.+.. .+.=|. .|. ...++-.+.++++.+..++|++ T Consensus 70 ~~vi~g-v~~~s~~~~i~~a~~a~~~Gad~i--~v~pP~----------~~~-~~~~~~~~~~~~i~~~~~~pi~----- 130 (294) T 2ehh_A 70 IKVIAG-TGGNATHEAVHLTAHAKEVGADGA--LVVVPY----------YNK-PTQRGLYEHFKTVAQEVDIPII----- 130 (294) T ss_dssp SEEEEE-CCCSCHHHHHHHHHHHHHTTCSEE--EEECCC----------SSC-CCHHHHHHHHHHHHHHCCSCEE----- T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHHCCCCEE--EECCCC----------CCC-CCHHHHHHHHHHHHHHCCCCEE----- T ss_conf 878998-178459999999999997699999--988999----------999-8999999999999971399789----- Q ss_pred HHHHHHHHHHCCEEEECHHHC--CCHHHHHHH-HHCCCEEEEECCCCCCHHHHHH Q ss_conf 999987650215788225762--899999998-5059779983677789999999 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLC--RQTDLLTAA-AQTGRVINVKKGQFLSPWEMHN 176 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~--rqtdLl~a~-a~t~kpV~iKkgq~~s~~e~~~ 176 (301) +.+.|.+.- -..+++.++ .+....+-+|..- .+.+.+.. T Consensus 131 ------------lYn~p~~~g~~~~~~~l~~l~~~~~nv~giK~~~-~d~~~~~~ 172 (294) T 2ehh_A 131 ------------IYNIPSRTCVEISVDTMFKLASECENIVASKEST-PNMDRISE 172 (294) T ss_dssp ------------EEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECC-SCHHHHHH T ss_pred ------------EEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCC-CCHHHHHH T ss_conf ------------9956310487642579999984358559998088-88899999 No 138 >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A Probab=55.11 E-value=11 Score=17.42 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=9.5 Q ss_pred CCHHHHHHHHHHHHHH--CCEEEEEC Q ss_conf 7124888999886652--87688522 Q gi|254780669|r 99 GLKKGREIFRDLKKKY--GFPILTDV 122 (301) Q Consensus 99 Gle~gL~il~e~k~~~--glpv~TeV 122 (301) ..+|-.++++.+.+.. .+|++.-| T Consensus 82 s~eEr~~l~~~~~~~~~~r~pvi~gv 107 (343) T 2v9d_A 82 GAEERKAIARFAIDHVDRRVPVLIGT 107 (343) T ss_dssp CHHHHHHHHHHHHHHHTTSSCEEEEC T ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 29999999999999738988279854 No 139 >1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1 Probab=54.98 E-value=3.2 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=15.4 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 777899999999999972587808995 Q gi|254780669|r 166 GQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 166 gq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) |.|.+..+...+.+++...|-+..|+- T Consensus 51 Gpf~~~~~A~~~~~~L~~~G~~~~i~~ 77 (81) T 1uta_A 51 GPVKGKENADSTLNRLKMAGHTNCIRL 77 (81) T ss_dssp SSCBTTTHHHHHHHHHHHHCCSCCBCC T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 773999999999999998799986993 No 140 >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Probab=54.74 E-value=11 Score=17.38 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=79.3 Q ss_pred CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--------------CCCCCCCCCCH Q ss_conf 2797699706999548634999999999999999655339970660155768866--------------63222456712 Q gi|254780669|r 36 QVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRS--------------SLAGKRGVGLK 101 (301) Q Consensus 36 ~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRt--------------S~~sfrG~Gle 101 (301) +++|-+ |+.+=||| .-.+.+++..+. +.+. =..+.|+-+.++.+. +-.+|...|++ T Consensus 8 Gl~~~n--Pi~~aag~-~~~~~~~~~~~~----~~g~---Gavv~kti~~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~ 77 (311) T 1jub_A 8 NAKFAN--PFMNASGV-HCMTIEDLEELK----ASQA---GAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFD 77 (311) T ss_dssp TEEESS--SEEECTTS-SCSSHHHHHHHH----HSSC---SCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHH T ss_pred CEECCC--CEEECCCC-CCCCHHHHHHHH----HCCC---EEEEEEEEECCCCCCCCCCEEEECCCHHHHCCCCCCCCHH T ss_conf 987389--83888788-879999999999----7795---7999879801455369998389866414421576672089 Q ss_pred HHHHHHHHHHHH--HCCEEEEECCC---HHHH---HHH--HHHCCEEEECHHHCCCH--------------HHHHHHHH- Q ss_conf 488899988665--28768852288---9999---876--50215788225762899--------------99999850- Q gi|254780669|r 102 KGREIFRDLKKK--YGFPILTDVHT---EQQC---EAI--ADSVDILQIPALLCRQT--------------DLLTAAAQ- 156 (301) Q Consensus 102 ~gL~il~e~k~~--~glpv~TeV~~---~~~~---e~~--~~~vDilQIgA~~~rqt--------------dLl~a~a~- 156 (301) .-++.+.+.+++ .+.|++--|.- .+.. +.+ ++++|++-+- ..|-|+ ++++++.+ T Consensus 78 ~~~~~~~~~~~~~~~~~pii~si~g~~~~~~~~~~~~~~~a~~ad~ielN-lscPn~~~~~~~~~~~~~~~~~~~~v~~~ 156 (311) T 1jub_A 78 YYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELN-LSCPNVPGEPQLAYDFEATEKLLKEVFTF 156 (311) T ss_dssp HHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEE-SCCCCSSSCCCGGGCHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEC-CCCCCCCCHHHHHHCHHHHHHHHHHHHHC T ss_conf 99998888887515578806642166642268999886406756535551-54667675133330799999999987530 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 597799836777899999999999972587808995 Q gi|254780669|r 157 TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 157 t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) +++||.+|-..+.+..+...+++.+...|..-+... T Consensus 157 ~~~Pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (311) T 1jub_A 157 FTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSV 192 (311) T ss_dssp CCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEEC T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECC T ss_conf 244322457886316679999999862274718623 No 141 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Probab=54.62 E-value=11 Score=17.37 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=78.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CEE-EEECCCHHHHHHH Q ss_conf 9999999999999996553399706601557688666322245671248889998866528--768-8522889999876 Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYG--FPI-LTDVHTEQQCEAI 131 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~g--lpv-~TeV~~~~~~e~~ 131 (301) .+.|++..+++.+.+-|.+.. - -.+|.+ .+++.+++++++|+ +-| .--|.+.+|++.+ T Consensus 16 ~~~~~a~~~a~al~~~Gi~~i-----E-----------itl~tp---~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a 76 (212) T 2v82_A 16 ITPDEALAHVGAVIDAGFDAV-----E-----------IPLNSP---QWEQSIPAIVDAYGDKALIGAGTVLKPEQVDAL 76 (212) T ss_dssp CCHHHHHHHHHHHHHHTCCEE-----E-----------EETTST---THHHHHHHHHHHHTTTSEEEEECCCSHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCEE-----E-----------EECCCC---CHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH T ss_conf 999999999999998699989-----9-----------957993---499999999996687507853022247889999 Q ss_pred HH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 50-2157882257628999999985059779983677789999999999997258780899 Q gi|254780669|r 132 AD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 132 ~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) .+ .+|.+=-|. -+.++++++.+.+.|+.-= -+||.|...|.+ .|.+-+-+ T Consensus 77 ~~aGA~FivsP~---~~~~v~~~a~~~~i~~iPG---v~TpsEi~~A~~----~G~~~vK~ 127 (212) T 2v82_A 77 ARMGCQLIVTPN---IHSEVIRRAVGYGMTVCPG---CATATEAFTALE----AGAQALKI 127 (212) T ss_dssp HHTTCCEEECSS---CCHHHHHHHHHTTCEEECE---ECSHHHHHHHHH----TTCSEEEE T ss_pred HHCCCCEEECCC---CCHHHHHHHHHCCCCCCCC---CCCHHHHHHHHH----CCCCEEEE T ss_conf 854897898998---9989999999758763388---487699999998----29885863 No 142 >3noe_A DAP-A, dihydrodipicolinate synthase; Lys biosynthesis pathway, lyase; 2.95A {Pseudomonas aeruginosa} Probab=54.01 E-value=11 Score=17.31 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=61.6 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHH Q ss_conf 99548634999999999999999655339970660155768866632224567124888999886652876885228899 Q gi|254780669|r 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQ 126 (301) Q Consensus 47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~ 126 (301) +|+|..+ .|.+.+.+.|+..++.|.+.. .+.-|.|.+ +.-++-.+.++++.+..++|++- T Consensus 73 vi~gv~~-~s~~~~i~~a~~a~~~Gad~v--~v~~P~~~~-----------~~~~~i~~~~~~ia~~~~~pi~~------ 132 (292) T 3noe_A 73 VIAGTGA-NSTREAVALTEAAKSGGADAC--LLVTPYYNK-----------PTQEGMYQHFRHIAEAVAIPQIL------ 132 (292) T ss_dssp EEEECCC-SSHHHHHHHHHHHHTTTCSEE--EEECCCSSC-----------CCHHHHHHHHHHHHHHSCSCEEE------ T ss_pred EEEECCC-CCHHHHHHHHHHHHHCCCCEE--EECCCCCCC-----------CCHHHHHHHHHHHHHHCCCCEEE------ T ss_conf 8985587-559999999999998499999--988998899-----------89999999999999747998899------ Q ss_pred HHHHHHHHCCEEEECHHHC--CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 9987650215788225762--89999999850597799836777899999999999972587808995 Q gi|254780669|r 127 QCEAIADSVDILQIPALLC--RQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 127 ~~e~~~~~vDilQIgA~~~--rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) .+.|++.- -..++++.+++....+-+|-.-. +...+.... ...+.+-.+++ T Consensus 133 -----------Y~~p~~~g~~~~~~~~~~l~~~pni~giK~~~~-d~~~~~~~~---~~~~~~~~v~~ 185 (292) T 3noe_A 133 -----------YNVPGRTSCDMLPETVERLSKVPNIIGIKEATG-DLQRAKEVI---ERVGKDFLVYS 185 (292) T ss_dssp -----------EECHHHHSCCCCHHHHHHHHTSTTEEEEEECSC-CHHHHHHHH---HHSCTTSEEEE T ss_pred -----------EECCCCCCCCCCHHHHHHHHCCCCEEEEECCCC-CHHHHHHHH---HHCCCCCEEEE T ss_conf -----------979864477899999999847999899974879-989999999---97699959985 No 143 >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Probab=52.23 E-value=12 Score=17.13 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=38.0 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC---C Q ss_conf 9954863499999999999999965533997066015576886663222456712488899988665287688522---8 Q gi|254780669|r 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDV---H 123 (301) Q Consensus 47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV---~ 123 (301) ++.||..+=---.+-+.|..++.-+.+. .+- +.+.||-- +.+-|+...+..++|+...- . T Consensus 161 l~vG~nGvGKTTTiaKLA~~~k~~g~kv---~l~----------a~DTfRaa----AveQL~~~a~~~~v~~~~~~~~~~ 223 (359) T 2og2_A 161 MIVGVNGGGKTTSLGKLAHRLKNEGTKV---LMA----------AGDTFRAA----ASDQLEIWAERTGCEIVVAEGDKA 223 (359) T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCE---EEE----------CCCCSCHH----HHHHHHHHHHHHTCEEECCSSSSC T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCC---EEE----------ECCCCCHH----HHHHHHHHHHHCCCCEEECCCCCH T ss_conf 9978888864617999999999669986---056----------40423276----999999998642884242157622 Q ss_pred CHHHHHH-----H-HHHCCEEEE--CHHHCCCHHHHHHHHH Q ss_conf 8999987-----6-502157882--2576289999999850 Q gi|254780669|r 124 TEQQCEA-----I-ADSVDILQI--PALLCRQTDLLTAAAQ 156 (301) Q Consensus 124 ~~~~~e~-----~-~~~vDilQI--gA~~~rqtdLl~a~a~ 156 (301) ++..+.. + ++..|++=| +.|+-.+.+|..++.+ T Consensus 224 ~~a~v~~~a~~~Ak~~~~DvvlIDTAGR~~~~~~lm~EL~k 264 (359) T 2og2_A 224 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIA 264 (359) T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH T ss_conf 77888899999999779998998488878565889999999 No 144 >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A Probab=51.59 E-value=12 Score=17.06 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=36.5 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHH-CCEEEECHHHC-------------CCHHHHHHHHH----CCCEEEEE--CC Q ss_conf 9988665287688522889999876502-15788225762-------------89999999850----59779983--67 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADS-VDILQIPALLC-------------RQTDLLTAAAQ----TGRVINVK--KG 166 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~-vDilQIgA~~~-------------rqtdLl~a~a~----t~kpV~iK--kg 166 (301) |+++-+.-+.-++-.++|+-.+-.+.+. .+.+++..+-. -.++++..+.+ ++.||.+- .| T Consensus 9 lr~l~~~~~~l~~p~~~D~~SA~~~e~~Gf~ai~~sg~~~aa~~~G~pD~~~~~~~e~~~~~~~I~~~~~iPv~vD~d~G 88 (295) T 1xg4_A 9 FRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIG 88 (295) T ss_dssp HHHHHHHSSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTC T ss_pred HHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC T ss_conf 99997179988960688889999999839999994489998774799997747646788889999852047813400256 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 778999999999999725878089951 Q gi|254780669|r 167 QFLSPWEMHNILQKLHAHGAKDVLFCE 193 (301) Q Consensus 167 q~~s~~e~~~a~eki~~~Gn~~i~lcE 193 (301) +.-.+..+...+.++.+.|.--|.+=. T Consensus 89 yG~~~~~v~~tv~~~~~aG~agi~IED 115 (295) T 1xg4_A 89 FGSSAFNVARTVKSMIKAGAAGLHIED 115 (295) T ss_dssp SSSSHHHHHHHHHHHHHHTCSEEEEEC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECC T ss_conf 673116899999999976996787158 No 145 >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* Probab=51.39 E-value=12 Score=17.04 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=42.3 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHC Q ss_conf 99999999999999655339970660155768866632224567124888999886652876885228899998765021 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSV 135 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~v 135 (301) |-+...+.|+..++.|.+.. .+.=| +.|..+..+.-.+.++++.+..++|++- T Consensus 76 s~~~~i~~a~~a~~~Gad~~--~~~~P----------~~~~~~~~~~l~~~~~~ia~a~~~pi~i--------------- 128 (293) T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGI--ASYAP----------YYYPRMSEKHLVKYFKTLCEVSPHPVYL--------------- 128 (293) T ss_dssp CHHHHHHHHHHGGGSCCSEE--EEECC----------CSCSSCCHHHHHHHHHHHHHHCSSCEEE--------------- T ss_pred CHHHHHHHHHHHHHCCCCEE--ECCCC----------CCCCCCCHHHHHHHHHHHHHHHCCEEEE--------------- T ss_conf 67877888777774496555--04687----------0003588999999999999722553788--------------- Q ss_pred CEEEECHHHCC--CHHHHHHHHHCCCEEEEECC Q ss_conf 57882257628--99999998505977998367 Q gi|254780669|r 136 DILQIPALLCR--QTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 136 DilQIgA~~~r--qtdLl~a~a~t~kpV~iKkg 166 (301) .++|.+.-. ..+++.++ ...+.+|-. T Consensus 129 --Yn~P~~~g~~l~~~~~~~l---~~i~giK~s 156 (293) T 1w3i_A 129 --YNYPTATGKDIDAKVAKEI---GCFTGVKDT 156 (293) T ss_dssp --EECHHHHSCCCCHHHHHHH---CCEEEEEEC T ss_pred --ECCCCCCCCCCCHHHHHHC---CCCCCCCCC T ss_conf --7167535765428888751---565556535 No 146 >2pcq_A Putative dihidrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, structural genomics, NPPSFA; 2.10A {Thermus thermophilus HB8} Probab=51.29 E-value=12 Score=17.03 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=53.3 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHH Q ss_conf 99548634999999999999999655339970660155768866632224567124888999886652876885228899 Q gi|254780669|r 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQ 126 (301) Q Consensus 47 iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~ 126 (301) +|+| ++-.|.+...+.|+..++.|.+.. .+.=| +.|....-+.-.+.++++.+. +|++ T Consensus 65 vi~g-v~~~s~~~~i~~a~~a~~~G~d~v--~~~pP----------~~~~~~~~~~l~~~~~~ia~~--~pi~------- 122 (283) T 2pcq_A 65 FLVG-LMEETLPQAEGALLEAKAAGAMAL--LATPP----------RYYHGSLGAGLLRYYEALAEK--MPLF------- 122 (283) T ss_dssp CEEE-ECCSSHHHHHHHHHHHHHHTCSEE--EECCC----------CTTGGGTTTHHHHHHHHHHHH--SCEE------- T ss_pred EEEE-ECCCCHHHHHHHHHHHHHCCCCEE--EECCC----------CCCCCCCHHHHHHHHHHHHHC--CCCC------- T ss_conf 7999-678756889999888886499879--95586----------224666688899999999702--8863------- Q ss_pred HHHHHHHHCCEEEECHHHCC--CHHHHHHHHHCCCEEEEECCCCCCHHH Q ss_conf 99876502157882257628--999999985059779983677789999 Q gi|254780669|r 127 QCEAIADSVDILQIPALLCR--QTDLLTAAAQTGRVINVKKGQFLSPWE 173 (301) Q Consensus 127 ~~e~~~~~vDilQIgA~~~r--qtdLl~a~a~t~kpV~iKkgq~~s~~e 173 (301) ++++|.+.-. ..+++..+++....|-+|..- .++.. T Consensus 123 ----------~y~~p~~tg~~~~~~~l~~L~~~~~ivgiK~~~-~~~~~ 160 (283) T 2pcq_A 123 ----------LYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSS-GDLSR 160 (283) T ss_dssp ----------EEECHHHHCCCCCHHHHHHHTTSTTEEEEEECS-CCHHH T ss_pred ----------EECCCCCCCCCCCHHHHHHHHHHCCCEEECCCC-CCHHH T ss_conf ----------230675457787699999997221523303377-89999 No 147 >2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, PSI-2, protein structure initiative; 2.00A {Caulobacter crescentus CB15} Probab=51.16 E-value=13 Score=17.02 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=28.8 Q ss_pred HCCCHHHHHHHHHCCCE---EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 62899999998505977---998367778999999999999725878089951465 Q gi|254780669|r 144 LCRQTDLLTAAAQTGRV---INVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGT 196 (301) Q Consensus 144 ~~rqtdLl~a~a~t~kp---V~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~ 196 (301) ++++.+-++++.+.+|. .-+-.+..+.-+ +.-++.+...|-.-+-||+-+. T Consensus 136 ~~~s~~di~~a~~~gkia~~l~iEg~~~l~~~--l~~L~~~y~lGvR~i~Lt~n~~ 189 (417) T 2rag_A 136 MALTSDDARRIAKAGKKFAFVSMENSWPVGED--LSLVETFYKEGLRMAGPVHFRN 189 (417) T ss_dssp ECSSHHHHHHHHHTTCEEEEEEEECCGGGTTC--THHHHHHHHTTEEEEESCCSSC T ss_pred EECCHHHHHHHHHCCCEEEEEEEECCHHHCCC--HHHHHHHHHCCCEEEEECCCCC T ss_conf 96789999999866995999975261221364--6889999975976998224268 No 148 >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D* Probab=50.93 E-value=13 Score=16.99 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=98.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC- Q ss_conf 0699954863499999999999999965533997066015576886663222456712488899988665287688522- Q gi|254780669|r 44 RFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDV- 122 (301) Q Consensus 44 ~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV- 122 (301) ..+++.||..+---..+-++|..++..+.+ -. =-+.+.||--+.+ -|+...+..|+|+.+.- T Consensus 103 ~vi~lvG~~G~GKTTt~aKlA~~~~~~~~k---v~----------li~~Dt~R~ga~e----QL~~~a~~~~v~~~~~~~ 165 (304) T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKK---VM----------FCAGDTFRAAGGT----QLSEWGKRLSIPVIQGPE 165 (304) T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCC---EE----------EECCCCSSTTTTH----HHHHHHHHHTCCEECCCT T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCC---CE----------EEECCCCCCHHHH----HHHHHCCCCCCEEEECCC T ss_conf 699952466777411899999998651154---00----------3421420000678----999856556850796688 Q ss_pred -CCHHHHH-----HH-HHHCCEEEE--CHHHCCCHHHHHHHHHCC---------CE--EEEECCCCCCHHHHHHHHHHHH Q ss_conf -8899998-----76-502157882--257628999999985059---------77--9983677789999999999997 Q gi|254780669|r 123 -HTEQQCE-----AI-ADSVDILQI--PALLCRQTDLLTAAAQTG---------RV--INVKKGQFLSPWEMHNILQKLH 182 (301) Q Consensus 123 -~~~~~~e-----~~-~~~vDilQI--gA~~~rqtdLl~a~a~t~---------kp--V~iKkgq~~s~~e~~~a~eki~ 182 (301) .++..+- .. .+..|++=| +-|+-++.+|+.++.+.. .| +.+==.-....+++..+..+.. T Consensus 166 ~~d~~~~~~~~~~~~~~~~~d~iliDTaGr~~~~~~l~~el~~~~~~~~~~~~~~p~e~~LVl~a~~~~~~~~~~~~~~~ 245 (304) T 1rj9_A 166 GTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHE 245 (304) T ss_dssp TCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH T ss_conf 72078778999999998699989975043031037788777888877653267898558999611038356779999874 Q ss_pred HCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEEC Q ss_conf 25878089951465444010000000106888518716871 Q gi|254780669|r 183 AHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFD 223 (301) Q Consensus 183 ~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D 223 (301) ..|-..+|+|-=-.+--++. .+.++.++++|+.|= T Consensus 246 ~~~~~~~IlTKlDe~~~~G~------~ls~~~~~~~Pi~~i 280 (304) T 1rj9_A 246 AVGLTGVIVTKLDGTAKGGV------LIPIVRTLKVPIKFV 280 (304) T ss_dssp HHCCSEEEEECTTSSCCCTT------HHHHHHHHCCCEEEE T ss_pred CCCCCEEEEECCCCCCCCCH------HHHHHHHHCCCEEEE T ss_conf 27997799972468997709------999999989797999 No 149 >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Probab=49.76 E-value=13 Score=16.88 Aligned_cols=19 Identities=11% Similarity=0.279 Sum_probs=7.7 Q ss_pred HHHHHHHHHCCCEEEEECC Q ss_conf 9999998505977998367 Q gi|254780669|r 148 TDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 148 tdLl~a~a~t~kpV~iKkg 166 (301) .+++.++++....+-+|.. T Consensus 145 ~~~~~~l~~~~ni~g~K~s 163 (292) T 2ojp_A 145 PETVGRLAKVKNIIGIXEA 163 (292) T ss_dssp HHHHHHHHTSTTEEEC-CC T ss_pred HHHHHHHHCCCCEEEEECC T ss_conf 8999998379999999567 No 150 >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Probab=49.72 E-value=13 Score=16.87 Aligned_cols=192 Identities=16% Similarity=0.175 Sum_probs=98.8 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCC-----CCCCC-CCCCCCCHHHHHHHHHHHHHHCCEE Q ss_conf 99954863499999999999999965533-99706601557688-----66632-2245671248889998866528768 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSL-NIGLVYKSSFDKAN-----RSSLA-GKRGVGLKKGREIFRDLKKKYGFPI 118 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~-~~~~ifK~sfdKan-----RtS~~-sfrG~Gle~gL~il~e~k~~~glpv 118 (301) .+.||= =+.+...++++.+.+ +.++ .+|.=| |-+.|- +++-. -.+|..+++.++++++++++...|+ T Consensus 10 y~~~G~---P~~~~~~~~l~~l~~-g~d~iEiGiPf--sDP~aDGpvIq~a~~~Al~~G~~~~~~~~~~~~~r~~~~~p~ 83 (248) T 1geq_A 10 YLTAGD---PDKQSTLNFLLALDE-YAGAIELGIPF--SDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPI 83 (248) T ss_dssp EEETTS---SCHHHHHHHHHHHGG-GBSCEEEECCC--SCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCE T ss_pred EECCCC---CCHHHHHHHHHHHHC-CCCEEEECCCC--CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 971717---987899999999870-89999978888--886665899999999999779879999999999973469878 Q ss_pred EE-ECCC-------HHHHHHHHH-HCCEEEECHHHCCC-HHHHHHHHHCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 85-2288-------999987650-21578822576289-9999998505977-998367778999999999999725878 Q gi|254780669|r 119 LT-DVHT-------EQQCEAIAD-SVDILQIPALLCRQ-TDLLTAAAQTGRV-INVKKGQFLSPWEMHNILQKLHAHGAK 187 (301) Q Consensus 119 ~T-eV~~-------~~~~e~~~~-~vDilQIgA~~~rq-tdLl~a~a~t~kp-V~iKkgq~~s~~e~~~a~eki~~~Gn~ 187 (301) +- --.+ ..-++.+++ .+|-+=||---... .++..++.+.+.. |.+=-+ .|+++ -.+++.+.... T Consensus 84 vlm~Y~N~i~~~G~~~f~~~~~~~Gv~g~iipDlp~ee~~~~~~~~~~~gl~~i~lvsp--tt~~~---ri~~i~~~s~g 158 (248) T 1geq_A 84 VLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAP--NTPDE---RLKVIDDMTTG 158 (248) T ss_dssp EEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECT--TCCHH---HHHHHHHHCSS T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECC--CCHHH---HHHHHHHCCCC T ss_conf 99806650123579999999986798578605788667666765652169515898578--88199---99877634897 Q ss_pred CEEE-EECCCCCCCHHHCCC--CCCCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 0899-514654440100000--0010688851-87168711777421223453212638899999999997189889998 Q gi|254780669|r 188 DVLF-CERGTSFGYNTLVTD--MRSIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 188 ~i~l-cERG~~fgy~~lvvD--~~~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) =|.+ .-.|+| |-++...+ ...+..+|+. ..||++---=+ .+|-+ +.....++||+.+= T Consensus 159 fiY~vs~~GvT-G~~~~~~~~~~~~i~~iK~~t~~Pv~vGFGI~-------------t~e~v----~~~~~~~ADGVIVG 220 (248) T 1geq_A 159 FVYLVSLYGTT-GAREEIPKTAYDLLRRAKRICRNKVAVGFGVS-------------KREHV----VSLLKEGANGVVVG 220 (248) T ss_dssp EEEEECCC--------CCCHHHHHHHHHHHHHCSSCEEEESCCC-------------SHHHH----HHHHHTTCSEEEEC T ss_pred EEEEECCCCCC-CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCC-------------CHHHH----HHHHHCCCCEEEEC T ss_conf 17984145557-87754320257788875104678637982469-------------99999----99987489999988 Q ss_pred ECC Q ss_conf 369 Q gi|254780669|r 264 THQ 266 (301) Q Consensus 264 ~Hp 266 (301) ++- T Consensus 221 Sai 223 (248) T 1geq_A 221 SAL 223 (248) T ss_dssp HHH T ss_pred HHH T ss_conf 899 No 151 >3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET: FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A* Probab=49.21 E-value=13 Score=16.82 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=81.1 Q ss_pred CCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-------------- Q ss_conf 770683578772797699706999548634999999999999999655339970660155768866-------------- Q gi|254780669|r 25 NAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRS-------------- 90 (301) Q Consensus 25 ~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRt-------------- 90 (301) +-.+++ -+++|-| |+.+=|||=. .+.|.+.. +.+.| .=..+.|+.++++-+. T Consensus 36 ~L~~~~----~G~~f~N--Pi~lAAG~~~-k~~e~~~~----~~~~G---~G~vv~kTit~~p~~gn~~PR~~~~~~~~~ 101 (354) T 3gz3_A 36 SLQVNL----LNNTFAN--PFMNAAGVMC-TTTEELVA----MTESA---SGSLVSKSCTPALREGNPTPRYQALPLGSI 101 (354) T ss_dssp CCCEEE----TTEEESS--SEEECTTSSC-SSHHHHHH----HHHSS---CSCEEEEEECSSCBCCSCSCCEEEETTEEE T ss_pred CCEEEE----CCEECCC--CCEECCCCCC-CCHHHHHH----HHHCC---CCEEEECCCCCCCCCCCCCCEEEECCCCHH T ss_conf 511788----9986599--8886868999-99899999----99749---888995863625346999980897153244 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC---HH------HHHHH-HHHCCEEEEC--H-------HHCCCHHHH Q ss_conf 6322245671248889998866528768852288---99------99876-5021578822--5-------762899999 Q gi|254780669|r 91 SLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT---EQ------QCEAI-ADSVDILQIP--A-------LLCRQTDLL 151 (301) Q Consensus 91 S~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~---~~------~~e~~-~~~vDilQIg--A-------~~~rqtdLl 151 (301) .-.+|.-.|++.-++.+.+.++....|++--|.- .+ .++.+ .+.+|.+.|- . -+.++.+.+ T Consensus 102 N~~G~~n~G~~~~~~~l~~~~~~~~~pvi~SI~g~~~~e~~~~~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~ 181 (354) T 3gz3_A 102 NSMGLPNNGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAM 181 (354) T ss_dssp ECCCCCBCCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEEC-------------CHHHH T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHCCCHHHH T ss_conf 44227786768887766875431478722100267840169999999886315454799965677877720000389999 Q ss_pred ----HHHHH-CCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf ----99850-5977998367778999999999999725 Q gi|254780669|r 152 ----TAAAQ-TGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 152 ----~a~a~-t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) .++.+ +..|+.+|-+.+.+..+...+++.+... T Consensus 182 ~~i~~~v~~~~~~pv~vKl~~~~~~~~~~~~~~~~~~~ 219 (354) T 3gz3_A 182 RQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEF 219 (354) T ss_dssp HHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99998754430265543355545435579999998532 No 152 >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Probab=47.94 E-value=14 Score=16.69 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=69.4 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHH-HHHHHC-----CEEEECHHHCCCHHHHHHHHHCC-CEEEEE---CCCCCCHHHH Q ss_conf 8999886652876885228899998-765021-----57882257628999999985059-779983---6777899999 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCE-AIADSV-----DILQIPALLCRQTDLLTAAAQTG-RVINVK---KGQFLSPWEM 174 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e-~~~~~v-----DilQIgA~~~rqtdLl~a~a~t~-kpV~iK---kgq~~s~~e~ 174 (301) +.=+++++.+|.+-.-=+..-..+- .+.... |-+-+|++.|-.+ +.++...| +||.+- .-..+++++. T Consensus 39 ~fE~~~a~~~~~~~ai~~~Sgt~Al~~al~~l~~~~gdeVi~~~~t~~a~--~~~i~~~G~~pvf~Dvd~~~~~id~~~l 116 (367) T 3nyt_A 39 ELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVAT--AETVALLGAKPVYVDIDPRTYNLDPQLL 116 (367) T ss_dssp HHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBCTTTCSBCGGGT T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCCCHHH--HHHHHHCCCEEEEEECCCCCCCCCHHHH T ss_conf 99999999978595999778999999999980899949998468665368--9999983997999944798688599999 Q ss_pred HHHHHHHHHCCCCCEE-EEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHH Q ss_conf 9999999725878089-95146544401000000010688-851871687117774 Q gi|254780669|r 175 HNILQKLHAHGAKDVL-FCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSV 228 (301) Q Consensus 175 ~~a~eki~~~Gn~~i~-lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~ 228 (301) ..+ .+ .+...+ +++ .||+ ..|+..+..+ ++.+++||.|++||. T Consensus 117 ~~~----it-~~tkaIi~~h---~~G~---~~d~~~I~~~~~~~~i~vIeD~A~a~ 161 (367) T 3nyt_A 117 EAA----IT-PRTKAIIPVS---LYGQ---CADFDAINAIASKYGIPVIEDAAQSF 161 (367) T ss_dssp GGG----CC-TTEEEECCBC---GGGC---CCCHHHHHHHHHHTTCCBEEECTTTT T ss_pred HHH----CC-CCCEEEEEEC---CCCC---HHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 975----58-2673999947---8787---88999999999984986999677778 No 153 >2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 Probab=46.47 E-value=15 Score=16.55 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=31.8 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE----C-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 48634999999999999999655339970660----1-557688666322245671248889998866528 Q gi|254780669|r 50 GPCQIESHDHAFMIAEKLYAICQSLNIGLVYK----S-SFDKANRSSLAGKRGVGLKKGREIFRDLKKKYG 115 (301) Q Consensus 50 GPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK----~-sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~g 115 (301) |=+.. ++++....|..++....++...|+-= | +.+...++ +.-.-.+.-..+++++|+.+. T Consensus 99 ~f~~~-~~~~~~~Fa~~l~~~~~~y~lDGiDiD~Eyp~~~~~~~~~----~~~~~~~~~~~Li~elr~~~p 164 (289) T 2ebn_A 99 GIANL-STARAKAFAQELKNTCDLYNLDGVFFDDEYSAYQTPPPSG----FVTPSNNAAARLAYETKQAMP 164 (289) T ss_dssp CTTCB-CHHHHHHHHHHHHHHHHHHTCCEEEEECCSCCCCSSCCTT----BCCCCHHHHHHHHHHHHHHCT T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHCC T ss_conf 73558-9999999999999999983997599842257766777778----880678899999999998789 No 154 >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics, NPPSFA; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Probab=45.21 E-value=15 Score=16.42 Aligned_cols=78 Identities=15% Similarity=0.321 Sum_probs=47.6 Q ss_pred HHHHHHHHHCCC-EEEEEC----CCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCHHHCCCCCCCHHH-HHHCCCE Q ss_conf 999999850597-799836----7778999999999999725878089951465-44401000000010688-8518716 Q gi|254780669|r 148 TDLLTAAAQTGR-VINVKK----GQFLSPWEMHNILQKLHAHGAKDVLFCERGT-SFGYNTLVTDMRSIPIM-TSMGVPV 220 (301) Q Consensus 148 tdLl~a~a~t~k-pV~iKk----gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~-~fgy~~lvvD~~~i~~l-k~~~~PV 220 (301) .....++...|. ++.++- ...++++++..+.+.....+...+++++--. .+| + +.|+..+..+ ++++.+| T Consensus 104 ~s~~~~~~~~g~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~~lv~~~~~~~~~G--~-~~~~~~i~~~~~~~~~~~ 180 (371) T 2e7j_A 104 YSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYG--N-LPDVKKIAKVCSEYDVPL 180 (371) T ss_dssp HHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTC--C-CCCHHHHHHHHHTTTCCE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCC--E-EEHHHHHHHHHCCCEEEE T ss_conf 9899999986998999845447667769999999987543458808999967889982--5-444775566642542799 Q ss_pred EECHHHHH Q ss_conf 87117774 Q gi|254780669|r 221 IFDASHSV 228 (301) Q Consensus 221 i~D~SHs~ 228 (301) ++|.+|+. T Consensus 181 ~~D~a~~~ 188 (371) T 2e7j_A 181 LVNGAYAI 188 (371) T ss_dssp EEECTTTB T ss_pred EEECCCCC T ss_conf 99445554 No 155 >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A Probab=44.59 E-value=7.5 Score=18.50 Aligned_cols=150 Identities=15% Similarity=0.258 Sum_probs=73.8 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHHHHHC---------------C-EEEECH-----HHCCCH-HHHHHH Q ss_conf 712488899988665287688522889--9998765021---------------5-788225-----762899-999998 Q gi|254780669|r 99 GLKKGREIFRDLKKKYGFPILTDVHTE--QQCEAIADSV---------------D-ILQIPA-----LLCRQT-DLLTAA 154 (301) Q Consensus 99 Gle~gL~il~e~k~~~glpv~TeV~~~--~~~e~~~~~v---------------D-ilQIgA-----~~~rqt-dLl~a~ 154 (301) |...+..+.+.+.+++++||.--.=+. ...+.+...+ + +.-=++ -|.+.| +.++.+ T Consensus 85 g~~~~a~~v~~~a~~~~VPValHLDH~~~~~~~~i~~~idag~~~~~~~~~~gftSVM~D~S~~~~eeNi~~Tk~vve~A 164 (358) T 1dos_A 85 GAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERM 164 (358) T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCTTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 78989999999998669988996677752003677778898899999727888860365088677899999999999998 Q ss_pred HHCCCEEEEE------------------CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHH------HCCCCCC Q ss_conf 5059779983------------------67778999999999999725878089951465444-010------0000001 Q gi|254780669|r 155 AQTGRVINVK------------------KGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFG-YNT------LVTDMRS 209 (301) Q Consensus 155 a~t~kpV~iK------------------kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fg-y~~------lvvD~~~ 209 (301) ...|..|=-- ....-.|++....++.+.....-+.+.+==|++.| |.. .-.|+.- T Consensus 165 h~~gv~VEaElG~igg~ed~~~~~~~~~~~~~T~pe~a~~~~~ef~~~tgvD~LAvaiGt~HG~yk~~~~~l~p~l~~~~ 244 (358) T 1dos_A 165 SKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDS 244 (358) T ss_dssp HHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHH T ss_pred HHHCCEEEECCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH T ss_conf 55343478600221566777543344420136887889999998734676516887416523224788767770257999 Q ss_pred CHHHHH-HCCC-----EEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 068885-1871-----687117774212234532126388999999999971898899983 Q gi|254780669|r 210 IPIMTS-MGVP-----VIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 210 i~~lk~-~~~P-----Vi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) +..+++ ...| .++ | |+. |.. ...-+.|+..|+.=+=+-| T Consensus 245 l~~i~~~~~vp~~~~~LVl---H-----GgS-----Gip---~e~i~~ai~~GV~KiNi~T 289 (358) T 1dos_A 245 QEYVSKKHNLPHNSLNFVF---H-----GGS-----GST---AQEIKDSVSYGVVKMNIDT 289 (358) T ss_dssp HHHHHHHHTCCTTCSCEEE---C-----SCT-----TCC---HHHHHHHHHTTEEEEEECH T ss_pred HHHHHHHHCCCCCCCCEEC---C-----CCC-----CCC---HHHHHHHHHHCEEEHHHCH T ss_conf 9999997489975322132---6-----999-----999---9999999971603010164 No 156 >2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A Probab=44.25 E-value=16 Score=16.33 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=97.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECC- Q ss_conf 6999548634999999999999999655339970660155768866632224567124888999886652876885228- Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVH- 123 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~- 123 (301) .+++.||..+---..+-++|..++.-+.+. .+ -+.+.||-- +.+-|+...+..|+|+...-. T Consensus 101 vil~vG~nG~GKTTTiaKLA~~~~~~~~~V---~l----------va~Dt~R~a----A~eQL~~~a~~~~v~~~~~~~~ 163 (309) T 2qy9_A 101 VILMVGVNGVGKTTTIGKLARQFEQQGKSV---ML----------AAGDTFRAA----AVEQLQVWGQRNNIPVIAQHTG 163 (309) T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCE---EE----------ECCCTTCHH----HHHHHHHHHHHTTCCEECCSTT T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCC---EE----------EECCCCCHH----HHHHHHHHHHHCCCCEEECCCC T ss_conf 999965766676550789999998567761---48----------644530654----9999999875249837733788 Q ss_pred -CHHHHH-----HH-HHHCCEE--EECHHHCCCHHHHHHHHHCCC---------E--EEEECCCCCCHHHHHHHHHHHHH Q ss_conf -899998-----76-5021578--822576289999999850597---------7--99836777899999999999972 Q gi|254780669|r 124 -TEQQCE-----AI-ADSVDIL--QIPALLCRQTDLLTAAAQTGR---------V--INVKKGQFLSPWEMHNILQKLHA 183 (301) Q Consensus 124 -~~~~~e-----~~-~~~vDil--QIgA~~~rqtdLl~a~a~t~k---------p--V~iKkgq~~s~~e~~~a~eki~~ 183 (301) ++..+- .+ .+..|++ --..|+-++.+|..++.+..+ | +.+==.-....+.+..+...... T Consensus 164 ~d~~~i~~~~~~~a~~~~~D~vliDTaGR~~~~~~lm~EL~~i~~~~~~~~~~~p~e~~LVlda~~g~~~~~~~~~f~~~ 243 (309) T 2qy9_A 164 ADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEA 243 (309) T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 87999999999999976998999689887767899999999999998753367872456510032337799999862312 Q ss_pred CCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEE Q ss_conf 587808995146544401000000010688851871687 Q gi|254780669|r 184 HGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIF 222 (301) Q Consensus 184 ~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~ 222 (301) .+-..+++|-=-.+--++. .+.+..++++||.| T Consensus 244 ~~~~g~IlTKlD~t~k~G~------~ls~~~~~~~Pi~f 276 (309) T 2qy9_A 244 VGLTGITLTKLDGTAKGGV------IFSVADQFGIPIRY 276 (309) T ss_dssp SCCCEEEEECCTTCTTTTH------HHHHHHHHCCCEEE T ss_pred CCCCEEEEECCCCCCCCCH------HHHHHHHHCCCEEE T ss_conf 6887799954347887649------99999998979799 No 157 >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* Probab=44.06 E-value=16 Score=16.31 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=91.9 Q ss_pred HHHHHHHHHHHCCEE-EEECCCHHHHHHHHH-HCCEEEECHHH---------CCC--H-H---HHHHHHH-CCCE---EE Q ss_conf 889998866528768-852288999987650-21578822576---------289--9-9---9999850-5977---99 Q gi|254780669|r 104 REIFRDLKKKYGFPI-LTDVHTEQQCEAIAD-SVDILQIPALL---------CRQ--T-D---LLTAAAQ-TGRV---IN 162 (301) Q Consensus 104 L~il~e~k~~~glpv-~TeV~~~~~~e~~~~-~vDilQIgA~~---------~rq--t-d---Ll~a~a~-t~kp---V~ 162 (301) +.-|++.|.+ |-|+ .-...|...+..+.+ .+|++=||-=+ .++ . + -.+++.| ...+ +- T Consensus 6 i~~L~~~K~~-g~ki~~lTayD~~~A~~~d~agiDiilVGDSlg~~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~ii~D 84 (275) T 1o66_A 6 VNTLQKMKAA-GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSD 84 (275) T ss_dssp HHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEE T ss_pred HHHHHHHHHC-CCCEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 9999999747-994899967899999999986998899837605310677677725788887889999704877138946 Q ss_pred EECCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEE----ECHHHHHHHCCC-CCC Q ss_conf 836777-89999999999997258780899514654440100000001068885187168----711777421223-453 Q gi|254780669|r 163 VKKGQF-LSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVI----FDASHSVQQPGI-HGN 236 (301) Q Consensus 163 iKkgq~-~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi----~D~SHs~q~p~~-~~~ 236 (301) +=-+.+ .+.++.++++.++...|. +.+-||.|.. . ...+..|.+.+.||+ +=|..+.+.-|- ..+ T Consensus 85 mPf~sy~~~~~~~~~~A~~l~~~ga-davk~eg~~~--~------~~~i~~l~~~gIPV~gHiGL~Pq~~~~~GG~r~~g 155 (275) T 1o66_A 85 LPFGAYQQSKEQAFAAAAELMAAGA-HMVKLEGGVW--M------AETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQG 155 (275) T ss_dssp CCTTSSSSCHHHHHHHHHHHHHTTC-SEEEEECSGG--G------HHHHHHHHHTTCCEEEEEESCGGGTTC-------- T ss_pred CCHHHCCCHHHHHHHHHHHHHHCCC-CCEECCCHHH--H------HHHHHHHHHCCCCEEEECCCCCEEEECCCCEECCC T ss_conf 7701022539999999999986485-5113255065--8------99999999879966874046752544058622146 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH Q ss_conf 21263889999999999718988999836983 Q gi|254780669|r 237 CSGGERQYIVPLAKAAVAIGIAGIFLETHQDP 268 (301) Q Consensus 237 ~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P 268 (301) .+....+ +..-|++=-.+|+-++.+|+=|.. T Consensus 156 k~~e~~~-l~~~ak~lE~AGa~aivlE~Vp~e 186 (275) T 1o66_A 156 RGGKAQA-LLNDAKAHDDAGAAVVLMECVLAE 186 (275) T ss_dssp ---CHHH-HHHHHHHHHHTTCSEEEEESCCHH T ss_pred CHHHHHH-HHHHHHHHHHCCCCEEEECCCCHH T ss_conf 4156789-999999999667626641036477 No 158 >1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Probab=43.93 E-value=16 Score=16.29 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=70.2 Q ss_pred HHHHHHHHHHCCEEEEE------------CCCHHHHHHHHH-HCCEEEECHHHCCCH------HHHHHHHHC-CCEEEEE Q ss_conf 89998866528768852------------288999987650-215788225762899------999998505-9779983 Q gi|254780669|r 105 EIFRDLKKKYGFPILTD------------VHTEQQCEAIAD-SVDILQIPALLCRQT------DLLTAAAQT-GRVINVK 164 (301) Q Consensus 105 ~il~e~k~~~glpv~Te------------V~~~~~~e~~~~-~vDilQIgA~~~rqt------dLl~a~a~t-~kpV~iK 164 (301) .-++++++..+.|++-. .....+++...+ .+|++-++......+ ++++.+... ..++.+. T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 138 (234) T 1yxy_A 59 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA 138 (234) T ss_dssp HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 76999972467663667641566620111004999999997599858998316874335789999999974279966873 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHH Q ss_conf 677789999999999997258780899514654440-1000000010688851871687117774212234532126388 Q gi|254780669|r 165 KGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGY-NTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQ 243 (301) Q Consensus 165 kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy-~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~ 243 (301) . -.++.+.+. ....|..-+...-||..... .....++.-....+....|||.+-- -+. T Consensus 139 ~--v~t~~~~~~----~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG---------------I~~ 197 (234) T 1yxy_A 139 D--ISTFDEGLV----AHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGK---------------IHS 197 (234) T ss_dssp E--CSSHHHHHH----HHHTTCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHTTCCEEEESC---------------CCS T ss_pred C--CCCHHHHHH----HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC---------------CCC T ss_conf 3--799999999----9974999898416446577767741679999987147981898799---------------999 Q ss_pred HHHHHHHHHHHHCCCEEEEEE Q ss_conf 999999999971898899983 Q gi|254780669|r 244 YIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 244 ~v~~la~aa~a~G~dGlfiE~ 264 (301) +.-+..++.+|+||+++=+ T Consensus 198 --~~d~~~al~~GAdgV~vGs 216 (234) T 1yxy_A 198 --PEEAKKINDLGVAGIVVGG 216 (234) T ss_dssp --HHHHHHHHTTCCSEEEECH T ss_pred --HHHHHHHHHCCCCEEEECH T ss_conf --9999999986999999893 No 159 >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Probab=43.70 E-value=16 Score=16.27 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=53.9 Q ss_pred HHHHHHHH-CCCEEEEEC------CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCC---HHHHH-HC Q ss_conf 99999850-597799836------777899999999999972587808995146544401000000010---68885-18 Q gi|254780669|r 149 DLLTAAAQ-TGRVINVKK------GQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSI---PIMTS-MG 217 (301) Q Consensus 149 dLl~a~a~-t~kpV~iKk------gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i---~~lk~-~~ 217 (301) ++++++-+ .+.|+.++- ....+.+|+...+..+.+.|.+ .+-+-+|..+........-..+ ...|+ .+ T Consensus 199 Eii~aVr~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~l~~~g~d-~~~~~~g~~~~~~~~~~~~~~~~~~~~ik~~~~ 277 (340) T 3gr7_A 199 EVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVD-LVDVSSGAIVPARMNVYPGYQVPFAELIRREAD 277 (340) T ss_dssp HHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCC-EEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 9999999872887610203444458988789999999999864755-364322401266567788631379999999749 Q ss_pred CCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEE Q ss_conf 716871177742122345321263889999999999718-9889998 Q gi|254780669|r 218 VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIG-IAGIFLE 263 (301) Q Consensus 218 ~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G-~dGlfiE 263 (301) .||+.-- +-++ +..|..+++.| +|.+.+- T Consensus 278 ~pvi~~G---------------~i~~--~~~ae~~l~~g~aD~V~~g 307 (340) T 3gr7_A 278 IPTGAVG---------------LITS--GWQAEEILQNGRADLVFLG 307 (340) T ss_dssp CCEEEES---------------SCCC--HHHHHHHHHTTSCSEEEEC T ss_pred CCEEEEC---------------CCCC--HHHHHHHHHCCCCCHHHHH T ss_conf 8689972---------------7599--9999999987994135878 No 160 >3hje_A 704AA long hypothetical glycosyltransferase; trehalose biosynthesis, maltooligoside trehalose synthase (mtsase); 1.90A {Sulfolobus tokodaii str} Probab=43.41 E-value=16 Score=16.24 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHCC-CCEEEECC------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC Q ss_conf 999999999999655339-97066015------576886663222456712488899988665287688522 Q gi|254780669|r 58 DHAFMIAEKLYAICQSLN-IGLVYKSS------FDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDV 122 (301) Q Consensus 58 e~~~~~A~~lk~~~~~~~-~~~ifK~s------fdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV 122 (301) +-+.+....|+++|.... ..=+|++. ||-.+=++++.- .|-++.++-|-+.-.+.||.|+-|+ T Consensus 15 ~gi~~kLdYLk~LGVtaIwLSPI~~a~pgS~HGYDv~Dy~~IdP~--fGt~edf~~Lv~aaH~rGIkVIlDi 84 (704) T 3hje_A 15 SEIRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDE--LGGEEEYIRLIDEAKSKGLGIIQDI 84 (704) T ss_dssp HHHHTTHHHHHHHTCSEEEECCCEEESTTCSSSCSEEEEEEECGG--GTHHHHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 999983479987699989968123599999989046172123053--3999999999999998899899997 No 161 >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa PAO1} Probab=43.14 E-value=17 Score=16.22 Aligned_cols=152 Identities=14% Similarity=0.122 Sum_probs=81.3 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHC-------------CCHHHHHHHHH----CCCEEEE--E Q ss_conf 89998866528768852288999987650-215788225762-------------89999999850----5977998--3 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLC-------------RQTDLLTAAAQ----TGRVINV--K 164 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~-------------rqtdLl~a~a~----t~kpV~i--K 164 (301) ..|+++.+.=+.-++-.++|.-.+..+.+ ..+.++++.... --++++..+.+ ++.||.+ - T Consensus 11 ~~fr~l~~~~~~~~~p~v~Da~SAri~e~aGf~a~~~sg~~~~~s~lG~pD~~~~t~~e~~~~v~~I~~~~~~PvivD~d 90 (287) T 3b8i_A 11 AMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADAD 90 (287) T ss_dssp HHHHHHHHSSCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECT T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCC T ss_conf 99999970899589606768999999998599989475899999738999888787899999998664047866585265 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCHHHCCCCCCCHHH-------HH-H---CCCEEECHHHHHHHC Q ss_conf 67778999999999999725878089951465--44401000000010688-------85-1---871687117774212 Q gi|254780669|r 165 KGQFLSPWEMHNILQKLHAHGAKDVLFCERGT--SFGYNTLVTDMRSIPIM-------TS-M---GVPVIFDASHSVQQP 231 (301) Q Consensus 165 kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~--~fgy~~lvvD~~~i~~l-------k~-~---~~PVi~D~SHs~q~p 231 (301) .|+. ++.+....+..+...|.--+.+=..-. .++... .+...+..+ .. . ++-++-. |-+ T Consensus 91 ~Gyg-~~~~~~~~v~~~~~aGaagi~iED~~~~k~~~~~~--~~~~~~~~~~~ki~aa~~a~~~~~~~i~aR-tda---- 162 (287) T 3b8i_A 91 HGYG-NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKS--TDLICVEEGVGKIRAALEARVDPALTIIAR-TNA---- 162 (287) T ss_dssp TCSS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCT--TCBCCHHHHHHHHHHHHHHCCSTTSEEEEE-EET---- T ss_pred CCCC-CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCHHHEEEC-CCC---- T ss_conf 4444-31899999999997577667864367755566556--555589999777888887303421111104-433---- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHH Q ss_conf 234532126388999999999971898899983698334 Q gi|254780669|r 232 GIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDN 270 (301) Q Consensus 232 ~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~ 270 (301) ...|--+. ..=+++-..+|+|++|+|.=++++. T Consensus 163 -----~~~g~deA-I~Ra~ay~eAGAD~ifi~~~~~~e~ 195 (287) T 3b8i_A 163 -----ELIDVDAV-IQRTLAYQEAGADGICLVGVRDFAH 195 (287) T ss_dssp -----TTSCHHHH-HHHHHHHHHTTCSEEEEECCCSHHH T ss_pred -----CCCCHHHH-HHHHHHHHHCCCCEEEECCCCCHHH T ss_conf -----32699999-9999999863998897327799999 No 162 >1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} SCOP: c.37.1.24 g.39.1.14 Probab=42.89 E-value=17 Score=16.19 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=32.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 0699954863499999999999999965533997066015576886663 Q gi|254780669|r 44 RFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSL 92 (301) Q Consensus 44 ~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~ 92 (301) .|-+|.||------..+++.+...+..+.+ -.+|||+.|. |.+. T Consensus 9 ~l~lI~GpMfSGKTteLl~~~~~~~~~~~~---vl~ik~~~D~--R~~~ 52 (191) T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQK---IQVFKPEIDN--RYSK 52 (191) T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCC---EEEEEEC--------- T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCE---EEEEEEEEEE--ECCC T ss_conf 699999150778999999999999987995---9999686305--8799 No 163 >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Probab=42.81 E-value=17 Score=16.18 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=8.2 Q ss_pred HHHHCCCEEEEEECCCH Q ss_conf 99718988999836983 Q gi|254780669|r 252 AVAIGIAGIFLETHQDP 268 (301) Q Consensus 252 a~a~G~dGlfiE~Hp~P 268 (301) +...|.+=..+|-++.+ T Consensus 392 lA~~G~~Vtl~Ek~~~l 408 (671) T 1ps9_A 392 AAARGHQVTLFDAHSEI 408 (671) T ss_dssp HHTTTCEEEEEESSSSS T ss_pred HHHHHCCCEEEEECCCC T ss_conf 98752564078305667 No 164 >3ez4_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; cytoplasm, magnesium, metal-binding, pantothenate biosynthesis; 2.10A {Burkholderia pseudomallei} Probab=42.53 E-value=17 Score=16.16 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=97.6 Q ss_pred HHHHHHHHHHHHCCEE-EEECCCHHHHHHHHH-HCCEEEECHHHC------CCH---------HHHHHHHHCC----CEE Q ss_conf 8889998866528768-852288999987650-215788225762------899---------9999985059----779 Q gi|254780669|r 103 GREIFRDLKKKYGFPI-LTDVHTEQQCEAIAD-SVDILQIPALLC------RQT---------DLLTAAAQTG----RVI 161 (301) Q Consensus 103 gL~il~e~k~~~glpv-~TeV~~~~~~e~~~~-~vDilQIgA~~~------rqt---------dLl~a~a~t~----kpV 161 (301) .+.-|++.|++ |-|+ .....|...+..+.+ .+|++=+|-=+- .+| .-.+++.|-- ..+ T Consensus 11 Ti~~l~~~K~~-g~ki~~lTayD~~~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~vtld~m~~h~~aV~rga~~~~vv~ 89 (269) T 3ez4_A 11 TVPKLQAMREA-GEKIAMLTSYDASFAALLDRANVDVQLIGDSLGNVLQGQATTLPVTLDDIAYHTACVARAQPRGLVVA 89 (269) T ss_dssp CHHHHHHHHHH-TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEE T ss_pred EHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 79999999858-99589997989999999987799899994778873178878751573557789999983388700783 Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEEC----HHHHHHHCC-CCCC Q ss_conf 98367778999999999999725878089951465444010000000106888518716871----177742122-3453 Q gi|254780669|r 162 NVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFD----ASHSVQQPG-IHGN 236 (301) Q Consensus 162 ~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D----~SHs~q~p~-~~~~ 236 (301) -+--+.+.+.++-+..+-++...|. +.+-||.|.. + ...+..|.+.+.||+-- |....+.-| -..+ T Consensus 90 DmPf~sy~~~~~a~~~a~~l~~~GA-daVKlEgg~~--~------~~~I~~L~~~GIPV~gHiGLtPQ~~~~~GG~k~qG 160 (269) T 3ez4_A 90 DLPFGTYGTPADAFASAVKLMRAGA-QMVKLEGGEW--L------AETVRFLVERAVPVCAHVGLTPQSVHAFGGFKVQG 160 (269) T ss_dssp ECCTTSCSSHHHHHHHHHHHHHHTC-SEEEEECSGG--G------HHHHHHHHHTTCCEEEEEC---------------- T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC-CEEEECCCHH--H------HHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCC T ss_conf 7884034555999999999995499-9898356366--9------99999999889938874046725554338863227 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCH Q ss_conf 21263889999999999718988999836983 Q gi|254780669|r 237 CSGGERQYIVPLAKAAVAIGIAGIFLETHQDP 268 (301) Q Consensus 237 ~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P 268 (301) .+.-...-+..-|++--.+|+-++.+|+=|.. T Consensus 161 kt~~ea~~ll~dA~~le~AGaf~ivlE~Vp~~ 192 (269) T 3ez4_A 161 KTEAGAAQLLRDARAVEEAGAQLIVLEAVPTL 192 (269) T ss_dssp ----CHHHHHHHHHHHHHHTCSEEEEESCCHH T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH T ss_conf 89999999999999998602227764267577 No 165 >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A Probab=41.79 E-value=17 Score=16.08 Aligned_cols=156 Identities=12% Similarity=0.163 Sum_probs=77.7 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 48889998866528768852288999987650-21578822576289999999850597799836777899999999999 Q gi|254780669|r 102 KGREIFRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~ek 180 (301) .+-+.|.++-++-..-..--++++-++-.+.+ ..+.+.+.-+-|-.. ...+..+.|= --..+..++...+++ T Consensus 52 ~~a~kL~~lL~~~~~v~~~Ga~d~~~A~~~~~aGf~aiYlSG~~vaa~---~~~s~~g~PD----~gl~~~~ev~~~v~~ 124 (429) T 1f8m_A 52 RGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGD---ANLSGHTYPD----QSLYPANSVPQVVRR 124 (429) T ss_dssp HHHHHHHHHHHHSSCEEEEBCCSHHHHHHHHHTTCSCEEECHHHHHHH---CCTTCCCCCS----SSCSCTTHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCEEEECHHHHHCC---CCCCCCCCCC----CCCCCHHHHHHHHHH T ss_conf 999999999716996873376788999999994998899660988543---2345689887----454655669999999 Q ss_pred HHHCCCC-CEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCE Q ss_conf 9725878-089951465444010000000106888518716871177742122345321263889999999999718988 Q gi|254780669|r 181 LHAHGAK-DVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAG 259 (301) Q Consensus 181 i~~~Gn~-~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dG 259 (301) |...=.. +-+..++|.+ -...+.+|||.|+-..- |...-|-.+.+.-+.+|+.| T Consensus 125 I~~a~~~~d~~~~~~~~~--------------~~~~~~~PIIaDaDtGf-----------G~~~nv~rtvk~~i~AGaAg 179 (429) T 1f8m_A 125 INNALQRADQIAKIEGDT--------------SVENWLAPIVADGEAGF-----------GGALNVYELQKALIAAGVAG 179 (429) T ss_dssp HHHHHHHHHHHHHHHTCC--------------SCSCSSCCEEEECTTTT-----------SSHHHHHHHHHHHHHTTCSE T ss_pred HHHHHHHHHHHHHHHCCC--------------CCCCCCCCEEECCCCCC-----------CCHHHHHHHHHHHHHCCCCE T ss_conf 999999999998740566--------------54235676442167778-----------84999999999999809949 Q ss_pred EEEEECCCH--HHCCCCCCCCCCHHHHHHHHH Q ss_conf 999836983--347978201868899999999 Q gi|254780669|r 260 IFLETHQDP--DNAPSDGPNMINIKDLPKLLS 289 (301) Q Consensus 260 lfiE~Hp~P--~~AlsD~~q~l~l~~l~~ll~ 289 (301) +.||=---| ...--+|..-++.+++-.-|+ T Consensus 180 ihiEDQv~~~KkCGH~~GK~lVp~~e~i~ki~ 211 (429) T 1f8m_A 180 SHWEDQLASEKKCGHLGGKVLIPTQQHIRTLT 211 (429) T ss_dssp EEEECBCGGGCCCTTSSCCEECCHHHHHHHHH T ss_pred EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 98625686234454568864057999999999 No 166 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=41.63 E-value=17 Score=16.07 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=77.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCEE-EEECCCHHHHH Q ss_conf 34999999999999999655339970660155768866632224567124888999886652--8768-85228899998 Q gi|254780669|r 53 QIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY--GFPI-LTDVHTEQQCE 129 (301) Q Consensus 53 siES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~--glpv-~TeV~~~~~~e 129 (301) ...+.++...+++.+.+-|.++. - -.+|.+ .+++.++++++.+ ++-+ +--|.+.+|++ T Consensus 17 r~~~~~~a~~~~~al~~~Gi~~i-----E-----------itl~~p---~a~~~I~~l~~~~~~~~~vGaGTV~~~~~~~ 77 (205) T 1wa3_A 17 RANSVEEAKEKALAVFEGGVHLI-----E-----------ITFTVP---DADTVIKELSFLKEKGAIIGAGTVTSVEQCR 77 (205) T ss_dssp CCSSHHHHHHHHHHHHHTTCCEE-----E-----------EETTST---THHHHHHHTHHHHHTTCEEEEESCCSHHHHH T ss_pred ECCCHHHHHHHHHHHHHCCCCEE-----E-----------EECCCC---CHHHHHHHHHHHCCCCEEEEEECCCCHHHHH T ss_conf 79899999999999998799889-----9-----------968997---6899999999731898289630001278899 Q ss_pred HHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 7650-2157882257628999999985059779983677789999999999997258780899 Q gi|254780669|r 130 AIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 130 ~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) .+.+ .+|.+=-|. .+.++++.+.+.+.|+. +=.+||.|...|.+ .|.+-+-+ T Consensus 78 ~a~~aGa~fivsP~---~~~~v~~~~~~~~~~~i---PGv~TptEi~~A~~----~G~~~vK~ 130 (205) T 1wa3_A 78 KAVESGAEFIVSPH---LDEEISQFCKEKGVFYM---PGVMTPTELVKAMK----LGHTILKL 130 (205) T ss_dssp HHHHHTCSEEECSS---CCHHHHHHHHHHTCEEE---CEECSHHHHHHHHH----TTCCEEEE T ss_pred HHHHCCCCEEECCC---CCHHHHHHHHHCCCCCC---CCCCCCHHHHHHHH----CCCCEEEE T ss_conf 99864874886799---99999999998399822---77487158999997----69997974 No 167 >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Probab=41.50 E-value=18 Score=16.05 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=47.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) ..+|+| |+-.|-+...+.|+..++.|.+. ...-| |+.+. +..++-+++++++.+..++|++- T Consensus 86 ~~vi~g-~~~~s~~~~i~~a~~a~~~Gad~---i~v~p---------P~~~~-~~~~~i~~~~~~v~~a~~~pi~~---- 147 (304) T 3cpr_A 86 AKLIAG-VGTNNTRTSVELAEAAASAGADG---LLVVT---------PYYSK-PSQEGLLAHFGAIAAATEVPICL---- 147 (304) T ss_dssp SEEEEE-CCCSCHHHHHHHHHHHHHTTCSE---EEEEC---------CCSSC-CCHHHHHHHHHHHHHHCCSCEEE---- T ss_pred CCEEEE-CCCCHHHHHHHHHHHHHHCCCCE---EEECC---------CCCCC-CCHHHHHHHHHHHHHHCCCCEEE---- T ss_conf 767862-57412999999999999739999---99889---------87789-89999999999999735997677---- Q ss_pred HHHHHHHHHHCCEEEECHHHCC--CHHHHHHHHHCCCEEEEECCCC Q ss_conf 9999876502157882257628--9999999850597799836777 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLCR--QTDLLTAAAQTGRVINVKKGQF 168 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~r--qtdLl~a~a~t~kpV~iKkgq~ 168 (301) .+.|.+.-+ -.+++.++++....+-+|.... T Consensus 148 -------------y~~p~~~g~~l~~~~~~~l~~~~~i~~iK~~~~ 180 (304) T 3cpr_A 148 -------------YDIPGRSGIPIESDTMRRLSELPTILAVXDAKG 180 (304) T ss_dssp -------------EECHHHHSSCCCHHHHHHHTTSTTEEEEEECSC T ss_pred -------------EECCCCCCCCCCHHHHHHHHCCCCEEEEECCCC T ss_conf -------------635543488888999999853899678515876 No 168 >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Probab=41.29 E-value=18 Score=16.03 Aligned_cols=52 Identities=6% Similarity=-0.066 Sum_probs=30.6 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCEEEE Q ss_conf 9999999999999965533997066015576886663222456712488-8999886652876885 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGR-EIFRDLKKKYGFPILT 120 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL-~il~e~k~~~glpv~T 120 (301) |.+.+.+.++..++.|.. ++.= ..|+.|.... ++++ ++++++.+..++|++- T Consensus 76 ~t~~~~~~~~~a~~~G~d----~~~~--------~~P~y~~~~~-~~~i~~~~~~ia~~~~~pi~i 128 (288) T 2nuw_A 76 NLNDVMELVKFSNEMDIL----GVSS--------HSPYYFPRLP-EKFLAKYYEEIARISSHSLYI 128 (288) T ss_dssp CHHHHHHHHHHHHTSCCS----EEEE--------CCCCSSCSCC-HHHHHHHHHHHHHHCCSCEEE T ss_pred HHHHHHHHHHHHHHHHHC----CCCC--------CCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCC T ss_conf 089999999988775402----1310--------4774323112-788999999985413798542 No 169 >1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A Probab=41.26 E-value=17 Score=16.14 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 01868899999999999999988519 Q gi|254780669|r 276 PNMINIKDLPKLLSQLLAIDKIIKPL 301 (301) Q Consensus 276 ~q~l~l~~l~~ll~~l~~i~~~vk~l 301 (301) .-+|++++++.|.+.+-.|+++++.| T Consensus 41 GIsL~~eqw~~l~~~~~~i~~ai~~l 66 (66) T 1pcf_A 41 GISLNPEQWSQLKEQISDIDDAVRKL 66 (66) T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHC T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHC T ss_conf 48867999999998799999999839 No 170 >2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa} Probab=40.92 E-value=18 Score=16.00 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=63.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-CCCCCCC-HHHHHHHHHHHHHHCCEEEEEC Q ss_conf 6999548634999999999999999655339970660155768866632-2245671-2488899988665287688522 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLA-GKRGVGL-KKGREIFRDLKKKYGFPILTDV 122 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~-sfrG~Gl-e~gL~il~e~k~~~glpv~TeV 122 (301) ++=+-|...+|+. ++..+.+++.|..+ .-.+|-..|.-.-. ..+..|| +-|.+..+++- +.|+- -|+ T Consensus 89 ~l~~Eg~~~l~~d---l~~l~~~y~lGvR~-----~~LT~n~~N~~g~g~~~~~~GLT~fG~~vV~emn-~lGmi--iDl 157 (325) T 2i5g_A 89 LYGFQNAHAFEDQ---IGYVEVFKQLGVGI-----VQMCYNTQNLVGTGCYERDGGLSGFGREIVAEMN-RVGIM--CDL 157 (325) T ss_dssp EEEESCGGGGTTC---THHHHHHHHTTEEE-----EESCCSSBCSSCBBTTSCCCCCCHHHHHHHHHHH-HHTCE--EEC T ss_pred EEECCCCCCCCCC---HHHHHHHHHCCCEE-----EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCEE--EEC T ss_conf 9806783011687---89999999737608-----9830489998777886789997666799999999-75938--985 Q ss_pred CCHHH--HHHHHHHCC--EE--EECHH-HC---CC--HHHHHHHHHCCCEEEE-------ECCCCCCHHHHHHHHHHHH- Q ss_conf 88999--987650215--78--82257-62---89--9999998505977998-------3677789999999999997- Q gi|254780669|r 123 HTEQQ--CEAIADSVD--IL--QIPAL-LC---RQ--TDLLTAAAQTGRVINV-------KKGQFLSPWEMHNILQKLH- 182 (301) Q Consensus 123 ~~~~~--~e~~~~~vD--il--QIgA~-~~---rq--tdLl~a~a~t~kpV~i-------Kkgq~~s~~e~~~a~eki~- 182 (301) .+... ...+.+... ++ --.+| +| || -+.|++++++|-.|-+ +.+.-.+++++.-.++|+. T Consensus 158 SH~s~~t~~d~i~~S~~Pvi~SHS~~ral~~h~RNl~De~lraia~~GGvIGi~~~~~~l~~~~~~t~~~~~~hi~~~~~ 237 (325) T 2i5g_A 158 SHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMN 237 (325) T ss_dssp TTBCHHHHHHHHHHCSSCCEEEEECBTTTCCCTTSBCHHHHHHHHHTTCEEEECCCGGGSSSGGGCBHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 88988999999841269768861353135677788989999999984986845147104338864449999999999997 Q ss_pred HCCCCCEEE Q ss_conf 258780899 Q gi|254780669|r 183 AHGAKDVLF 191 (301) Q Consensus 183 ~~Gn~~i~l 191 (301) -.|-+.|-+ T Consensus 238 l~G~dhVgi 246 (325) T 2i5g_A 238 IVGEDAIGI 246 (325) T ss_dssp HHCTTSEEE T ss_pred HCCCCCEEE T ss_conf 548511576 No 171 >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} Probab=40.37 E-value=18 Score=15.94 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=57.1 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCH Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665287688522889 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTE 125 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~ 125 (301) .+|+|-. -.|.+.+.+.|+..++.|.+.. ..-| |+.|+ +.-++-++.++++.+..++|++- T Consensus 78 ~vi~gv~-~~s~~~~i~~a~~a~~~Gad~v---~v~p---------P~~~~-~s~~~i~~~~~~i~~a~~~pi~l----- 138 (297) T 3flu_A 78 PVIAGTG-ANNTVEAIALSQAAEKAGADYT---LSVV---------PYYNK-PSQEGIYQHFKTIAEATSIPMII----- 138 (297) T ss_dssp CEEEECC-CSSHHHHHHHHHHHHHTTCSEE---EEEC---------CCSSC-CCHHHHHHHHHHHHHHCCSCEEE----- T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHCCCCCC---EECC---------CCCCC-CCHHHHHHHHHHHHHCCCCCEEE----- T ss_conf 5456767-5639999999999998299875---6258---------87889-89999999999998547998899----- Q ss_pred HHHHHHHHHCCEEEECHH--HCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 999876502157882257--6289999999850597799836777899999999999972587808995 Q gi|254780669|r 126 QQCEAIADSVDILQIPAL--LCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 126 ~~~e~~~~~vDilQIgA~--~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) .+.|.+ ..-..+++..+++....+-+|-. ..+...+.. -+...+.+=.+++ T Consensus 139 ------------Yn~P~~~g~~l~~e~l~~L~~~pni~giK~~-~~d~~~~~~---~~~~~~~~~~v~~ 191 (297) T 3flu_A 139 ------------YNVPGRTVVSMTNDTILRLAEIPNIVGVKEA-SGNIGSNIE---LINRAPEGFVVLS 191 (297) T ss_dssp ------------EECHHHHSSCCCHHHHHHHTTSTTEEEEEEC-SCCHHHHHH---HHHHSCTTCEEEE T ss_pred ------------EECCCCCCCCCCHHHHHHHHCCCCEEEEECC-CCCHHHHHH---HHHHCCCCEEEEC T ss_conf ------------9788644778999999998658998888548-899999999---9997699847835 No 172 >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, coenzyme A, transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Probab=40.09 E-value=18 Score=15.91 Aligned_cols=138 Identities=15% Similarity=0.111 Sum_probs=77.2 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHH-----HHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEE Q ss_conf 663222456712488899988665287688522889999876-----502157882257628999999985059779983 Q gi|254780669|r 90 SSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAI-----ADSVDILQIPALLCRQTDLLTAAAQTGRVINVK 164 (301) Q Consensus 90 tS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~-----~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iK 164 (301) ++..-+.|.- +.-.+.-+++.+-+|.+-.-=+..-.++... ...-|++-... ++ ...+...+...... +. T Consensus 80 ~~sr~~~g~~-~~~~~lE~~la~~~g~e~al~~~sG~~An~~~i~~l~~~~d~ii~d~-~~-h~s~~~G~~~~~a~--~~ 154 (401) T 1fc4_A 80 ASVRFICGTQ-DSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDA-LN-HASIIDGVRLCKAK--RY 154 (401) T ss_dssp CSCHHHHCCB-HHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEET-TC-CHHHHHHHHTSCSE--EE T ss_pred CCCCCCCCCC-HHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECC-CC-CHHHHHHHHHCCCC--EE T ss_conf 5225434894-89999999999862897478754327889999997626898999848-65-39998324204875--79 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHH-HHCCCEEECHHHHHHHCCC Q ss_conf 67778999999999999725878089951465444010000000106888-5187168711777421223 Q gi|254780669|r 165 KGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMT-SMGVPVIFDASHSVQQPGI 233 (301) Q Consensus 165 kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk-~~~~PVi~D~SHs~q~p~~ 233 (301) +-.+...+++....+.........++++.-|+..-..+ +.|+..+..++ +++..+++|-+|+.-..|. T Consensus 155 ~~~h~D~~~l~~~~~~~~~~~~~~~~vv~egv~s~~G~-~~~L~~i~~l~~~~~~~LivDeah~~g~~g~ 223 (401) T 1fc4_A 155 RYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV-IANLKGVCDLADKYDALVMVDDSHAVGFVGE 223 (401) T ss_dssp EECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTE-ECCHHHHHHHHHHTTEEEEEECTTTTTTSST T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-CHHHHHHHHHHHHHCEEEEEECCCCCCCCCC T ss_conf 96889999999999973433576289997787679996-3447999999998492898503211361368 No 173 >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Probab=39.20 E-value=19 Score=15.82 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=99.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCEEEEE-CCCHHHHH Q ss_conf 6349999999999999996553399706601557688666322245671248889998866-528768852-28899998 Q gi|254780669|r 52 CQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKK-KYGFPILTD-VHTEQQCE 129 (301) Q Consensus 52 CsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~-~~glpv~Te-V~~~~~~e 129 (301) ..-=|.++.+++++.|.++|.+..=.| |+ ++|+..+ +..+.+.+ .....+++- ......++ T Consensus 55 g~~fs~e~K~~i~~~L~~~GV~~IEvG-----~p---~~~~~~~---------~~~~~i~~~~~~~~~~~~~r~~~~d~~ 117 (423) T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELT-----SP---VASEQSR---------QDCEAICKLGLKCKILTHIRCHMDDAR 117 (423) T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEEC-----CT---TSCHHHH---------HHHHHHHTSCCSSEEEEEEESCHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEE-----CC---CCCHHHH---------HHHHHHHHHCCHHHHHHHHHCCHHHHH T ss_conf 999899999999999998197989996-----68---4783679---------999999870460353554643807699 Q ss_pred HHHH-HCCEEEECH-----HHCCC------------HHHHHHHHHCCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCCE Q ss_conf 7650-215788225-----76289------------9999998505977--99836777899999999999972587808 Q gi|254780669|r 130 AIAD-SVDILQIPA-----LLCRQ------------TDLLTAAAQTGRV--INVKKGQFLSPWEMHNILQKLHAHGAKDV 189 (301) Q Consensus 130 ~~~~-~vDilQIgA-----~~~rq------------tdLl~a~a~t~kp--V~iKkgq~~s~~e~~~a~eki~~~Gn~~i 189 (301) .+.+ .+|.+.+-. ++..+ .+.+..+.+.|.. +++-.....+++.+...++.+...|.+.| T Consensus 118 ~a~~~g~~~v~i~~~~s~~~~~~~~~~~~~~~l~~~~~~v~~ak~~G~~V~~~~ed~~~~~~~~l~~~~~~~~~~Gad~i 197 (423) T 3ivs_A 118 VAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRV 197 (423) T ss_dssp HHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEE T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 99986989689985452999999862129999999999998875058611120144557768999999988761398713 Q ss_pred EEEECCCCCCCHHHCCCC-CCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE Q ss_conf 995146544401000000-01068885-187168711777421223453212638899999999997189889 Q gi|254780669|r 190 LFCERGTSFGYNTLVTDM-RSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGI 260 (301) Q Consensus 190 ~lcERG~~fgy~~lvvD~-~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGl 260 (301) .+|.- +|+-+- .++ +-+-.+++ ...|+-+- .| -++.+...-+.+|+.+|++-+ T Consensus 198 ~laDT---~G~~~P-~~v~~~i~~l~~~~~~~lg~H-~H-------------Nd~GlA~ANslaAi~aGa~~v 252 (423) T 3ivs_A 198 GIADT---VGCATP-RQVYDLIRTLRGVVSCDIECH-FH-------------NDTGMAIANAYCALEAGATHI 252 (423) T ss_dssp EEEET---TSCCCH-HHHHHHHHHHHHHCSSEEEEE-EB-------------CTTSCHHHHHHHHHHTTCCEE T ss_pred CCCCC---CCCCCC-HHHHEEEEECCCCCCCCEEEE-EC-------------CCCCCHHHHHHHHHHHCCCCC T ss_conf 54565---466273-000001331146655524898-78-------------985609999999999599721 No 174 >1nqk_A Alkanesulfonate monooxygenase; structural genomics, beta barrel, PSI, protein structure initiative, midwest center for structural genomics; 2.20A {Escherichia coli} SCOP: c.1.16.4 PDB: 1m41_A Probab=38.81 E-value=19 Score=15.78 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 12638899999999997189889998 Q gi|254780669|r 238 SGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 238 ~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) .-|..+-|....++=..+|+|++++- T Consensus 305 lvGtpe~V~e~L~~~~d~Gvd~~~L~ 330 (381) T 1nqk_A 305 LVGDGPTVAARINEYAALGIDSFVLS 330 (381) T ss_dssp EEEEHHHHHHHHHHHHTTTCCEEEEE T ss_pred EEECHHHHHHHHHHHHHCCCCEEEEE T ss_conf 89889999999999997199989992 No 175 >3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Probab=38.44 E-value=20 Score=15.75 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=72.1 Q ss_pred EEEEECCC-----------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 69995486-----------------3499999999999999965533997066015576886663222456712488899 Q gi|254780669|r 45 FVLIAGPC-----------------QIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIF 107 (301) Q Consensus 45 l~iIAGPC-----------------siES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il 107 (301) -.+.+||| +++|.+.+.++++.-... .+..-..+...-+ .....|--|...++..+++ T Consensus 107 ~Iif~gp~Ks~~~l~~A~~~Gv~~~~~Ds~~eL~~i~~~~~~~----~v~~rI~~~~~~~-~~~~~sKFGi~~~~~~~~~ 181 (448) T 3btn_A 107 NIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHPNA----KVLLHIATEDNIG-GEDGNMKFGTTLKNCRHLL 181 (448) T ss_dssp GEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTTC----EEEEEBCCCC---------CCCCBCHHHHHHHH T ss_pred CEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC----CCEEEECCCCCCC-CCCCCCCCCCCHHHHHHHH T ss_conf 2999089899999999998699759989999999999862358----8012112444333-2224666687778999887 Q ss_pred HHHHHHHCCEEEE-ECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHH---HHHHH----HH Q ss_conf 9886652876885-2288999987650215788225762899999998505977998367778999---99999----99 Q gi|254780669|r 108 RDLKKKYGFPILT-DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPW---EMHNI----LQ 179 (301) Q Consensus 108 ~e~k~~~glpv~T-eV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~---e~~~a----~e 179 (301) +.+++ .++.++- -+|--+|+.....+...++.-+ .-++++.+.+-.-+-++|--|...... ++..+ .+ T Consensus 182 ~~~k~-~~l~l~Glh~H~GS~~~d~~~~~~~i~~~~---~~~~~~~~~g~~~~~idiGGGf~~~~~~~~~~~~~i~~~~~ 257 (448) T 3btn_A 182 ECAKE-LDVQIIGVKFHVSSACKEYQVYVHALSDAR---CVFDMAGEFGFTMNMLDIGGGFTGTEIQLEEVNHVISPLLD 257 (448) T ss_dssp HHHHH-HTCEEEEEECCCCTTCCCTTHHHHHHHHHH---HHHHHHHHTTCCCCEEECCSCCCSCHHHHHHHHHHHHHHHH T ss_pred HHHHC-CCCEEEEEEEEECCCCCCHHHHHHHHHHHH---HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH T ss_conf 77622-881785645541365465487999999999---99999998299536762157666566765668899988776 Q ss_pred HHHHCCCCCEEEEECCC Q ss_conf 99725878089951465 Q gi|254780669|r 180 KLHAHGAKDVLFCERGT 196 (301) Q Consensus 180 ki~~~Gn~~i~lcERG~ 196 (301) .....+..--+++|-|- T Consensus 258 ~~~~~~~~~~li~EPGR 274 (448) T 3btn_A 258 IYFPEGSGIQIISEPGS 274 (448) T ss_dssp HHSCTTSCCEEEECCSH T ss_pred HHHHHCCCCEEEECCCC T ss_conf 53320589769967986 No 176 >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Probab=38.20 E-value=20 Score=15.72 Aligned_cols=114 Identities=16% Similarity=0.266 Sum_probs=61.3 Q ss_pred CCCHHHHHHHHH-HCCEEEECHHHCCC---HHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECC- Q ss_conf 288999987650-21578822576289---999999850-597799836777899999999999972587808995146- Q gi|254780669|r 122 VHTEQQCEAIAD-SVDILQIPALLCRQ---TDLLTAAAQ-TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERG- 195 (301) Q Consensus 122 V~~~~~~e~~~~-~vDilQIgA~~~rq---tdLl~a~a~-t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG- 195 (301) +.+.+.++.+.+ .+|++-|-.-+-.. .+.++.+.+ .+.||.. |--.+++ .++.+...|..-|.+.=-+ T Consensus 143 ~~~~era~~l~~aGvd~ivID~Ahg~s~~~~~~ik~~k~~~~v~VIa--GNV~T~e----~a~~L~~aGAD~VkVGiG~G 216 (400) T 3ffs_A 143 VNEIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV--GNVVTEE----ATKELIENGADGIKVGIGPG 216 (400) T ss_dssp CC-CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEE--EEECSHH----HHHHHHHTTCSEEEECC--- T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EECCCHH----HHHHHHHCCCCEEEECCCCC T ss_conf 69899999998759977975465543210678999988637963999--4217899----99999980998565403278 Q ss_pred -------C-CCCCHHHCCCCCCCHHH----HHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf -------5-44401000000010688----8518716871177742122345321263889999999999718988999 Q gi|254780669|r 196 -------T-SFGYNTLVTDMRSIPIM----TSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFL 262 (301) Q Consensus 196 -------~-~fgy~~lvvD~~~i~~l----k~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfi 262 (301) . -+|+.. +.++... ++++.|||-|--..+ ..+.+ .|+++|+|.+|+ T Consensus 217 s~CtTr~~tGvG~Pq----~sav~~~a~~~~~~~v~iIADGGi~~------------~GDi~-----KAla~GAd~VMl 274 (400) T 3ffs_A 217 SICTTRIVAGVGVPQ----ITAIEKCSSVASKFGIPIIADGGIRY------------SGDIG-----KALAVGASSVMI 274 (400) T ss_dssp ------CCSCBCCCH----HHHHHHHHHHHTTTTCCEEEESCCCS------------HHHHH-----HHHTTTCSEEEE T ss_pred CCCCCCCCCCCCCCH----HHHHHHHHHHHHHCCCCEEECCCCCC------------CCHHH-----HHHHCCCCHHHH T ss_conf 456665303677447----99999999999865997895378576------------87399-----998718735333 No 177 >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Probab=37.98 E-value=20 Score=15.70 Aligned_cols=11 Identities=9% Similarity=0.383 Sum_probs=4.5 Q ss_pred CCEEECHHHHH Q ss_conf 71687117774 Q gi|254780669|r 218 VPVIFDASHSV 228 (301) Q Consensus 218 ~PVi~D~SHs~ 228 (301) .||++-|.-|+ T Consensus 97 ~pil~a~NfSl 107 (245) T 1p9l_A 97 TSVLIAPNFAI 107 (245) T ss_dssp CEEEECSCCCH T ss_pred CCEEEECCCHH T ss_conf 77899662089 No 178 >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* Probab=37.38 E-value=20 Score=15.64 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=25.9 Q ss_pred CEEEEECCCCCCCHHHCCCCCCCHHHHH-H-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 0899514654440100000001068885-1-871687117774212234532126388999999999971898899983 Q gi|254780669|r 188 DVLFCERGTSFGYNTLVTDMRSIPIMTS-M-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 188 ~i~lcERG~~fgy~~lvvD~~~i~~lk~-~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) -....++|.+...... +...++ . .+||++=--= -.+|.+..++ .++||+.+=+ T Consensus 165 ~~~~~~~g~~~~~~~~------~~~~~k~~~~~Pv~VGFGI-------------ss~e~a~~i~-----~~ADgvIVGS 219 (234) T 2f6u_A 165 PIIYIEYSGTYGNPEL------VAEVKKVLDKARLFYGGGI-------------DSREKAREML-----RYADTIIVGN 219 (234) T ss_dssp SEEEEECTTSCCCHHH------HHHHHHHCSSSEEEEESCC-------------CSHHHHHHHH-----HHSSEEEECH T ss_pred EEEEEECCCCCCCHHH------HHHHHHHCCCCCEEEECCC-------------CCHHHHHHHH-----HHCCEEEECH T ss_conf 9999812556665067------9999972579839998995-------------9999999999-----6199899995 No 179 >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* Probab=36.61 E-value=21 Score=15.60 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=12.6 Q ss_pred CCHHHHH----HHHHHHHHCCCCCEEEEECCC Q ss_conf 8999999----999999725878089951465 Q gi|254780669|r 169 LSPWEMH----NILQKLHAHGAKDVLFCERGT 196 (301) Q Consensus 169 ~s~~e~~----~a~eki~~~Gn~~i~lcERG~ 196 (301) -|..++. .+.+.+.. +.+=+++||.|+ T Consensus 361 ES~~dv~~Rl~~~l~eL~~-~~~VLIVsH~~v 391 (520) T 2axn_A 361 ESYQDLVQRLEPVIMELER-QENVLVICHQAV 391 (520) T ss_dssp CCHHHHHHHHHHHHHHHHH-CSSEEEEECHHH T ss_pred CCHHHHHHHHHHHHHHHHC-CCCEEEEECHHH T ss_conf 7999999999999999657-998999976899 No 180 >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Probab=36.61 E-value=21 Score=15.56 Aligned_cols=187 Identities=14% Similarity=0.187 Sum_probs=113.2 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE--CCCHHHHHHHHH-HCCE Q ss_conf 9999999996553399706601557688666322245671248889998866528768852--288999987650-2157 Q gi|254780669|r 61 FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTD--VHTEQQCEAIAD-SVDI 137 (301) Q Consensus 61 ~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~Te--V~~~~~~e~~~~-~vDi 137 (301) .+.|+.+.+.+.+ .++=...| +.++-+ .-..+++++.++..+|+.-+ |...++++.+.+ .+|- T Consensus 35 ~~~a~~~~~~g~d----~l~ivDLd--------~~~~~~--~~~~~i~~i~~~~~~pi~vgGGirs~~~~~~~l~~Ga~k 100 (244) T 1vzw_A 35 LEAALAWQRSGAE----WLHLVDLD--------AAFGTG--DNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTR 100 (244) T ss_dssp HHHHHHHHHTTCS----EEEEEEHH--------HHHTSC--CCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSE T ss_pred HHHHHHHHHCCCC----EEEEEECC--------CCCCCC--CHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCC T ss_conf 9999999986999----89998334--------334677--369999999986298747746287500021101345432 Q ss_pred EEECHHHCCCHHHHHHHHHCC--C---EEEEECCCCC------CHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCHHH Q ss_conf 882257628999999985059--7---7998367778------9999999999997258780899514---654440100 Q gi|254780669|r 138 LQIPALLCRQTDLLTAAAQTG--R---VINVKKGQFL------SPWEMHNILQKLHAHGAKDVLFCER---GTSFGYNTL 203 (301) Q Consensus 138 lQIgA~~~rqtdLl~a~a~t~--k---pV~iKkgq~~------s~~e~~~a~eki~~~Gn~~i~lcER---G~~fgy~~l 203 (301) +=++.....+.+++..+.+.. + -+-.|++.+. ...+.....+++.+.|...++++.= |+.-|++ T Consensus 101 vii~s~~~~~~~~~~~~~~~~g~~~ivslD~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~~di~~dGt~~G~d-- 178 (244) T 1vzw_A 101 VNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPN-- 178 (244) T ss_dssp EEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCC-- T ss_pred CHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCEEEECCCCEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCC-- T ss_conf 044566651919889999876925799840213673245353266543567778875166458877762558766689-- Q ss_pred CCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHH-HHHHCCCEEEEEECCCHHHCCCCCCCCCCH Q ss_conf 000001068885-187168711777421223453212638899999999-997189889998369833479782018688 Q gi|254780669|r 204 VTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKA-AVAIGIAGIFLETHQDPDNAPSDGPNMINI 281 (301) Q Consensus 204 vvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~a-a~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l 281 (301) +.-+..+++ ...|+++ +||-+.+-.-.... -...|+||+.+= .|+=. ..+++ T Consensus 179 ---~~l~~~i~~~~~~pvi~---------------~GGv~s~~Dl~~l~~l~~~g~~gvivg------sAl~~--g~i~~ 232 (244) T 1vzw_A 179 ---LELLKNVCAATDRPVVA---------------SGGVSSLDDLRAIAGLVPAGVEGAIVG------KALYA--KAFTL 232 (244) T ss_dssp ---HHHHHHHHHTCSSCEEE---------------ESCCCSHHHHHHHHTTGGGTEEEEEEC------HHHHT--TSSCH T ss_pred ---HHHHHHHHHHCCCCEEE---------------ECCCCCHHHHHHHHHHHHCCCCEEEEH------HHHHC--CCCCH T ss_conf ---99999999868998999---------------889999999999976404891054456------89887--99899 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780669|r 282 KDLPKLLS 289 (301) Q Consensus 282 ~~l~~ll~ 289 (301) +++.+.++ T Consensus 233 ~e~~~~~~ 240 (244) T 1vzw_A 233 EEALEATS 240 (244) T ss_dssp HHHHHHHC T ss_pred HHHHHHHH T ss_conf 99999872 No 181 >2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium LT2} Probab=36.25 E-value=21 Score=15.52 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=83.4 Q ss_pred CHHHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--EC--CCHHHHHH Q ss_conf 9999999999999965533997-0660155768866632224567124888999886652876885--22--88999987 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNIG-LVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DV--HTEQQCEA 130 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~~-~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV--~~~~~~e~ 130 (301) +++.+..++..+...-.+-..+ -+.= ++|- |.|- +.-...+...=...|+.|+. ++ .-+-.+.. T Consensus 60 t~~~~~~~~~a~~~~l~~~~~~~~VvI-g~D~--R~~s--------~~~~~~~~~gL~s~Gi~V~~~~~~G~~pTP~~~~ 128 (549) T 2fuv_A 60 NEPHILAIAQAIAEERAKNGITGPCYV-GKDT--HALS--------EPAFISVLEVLAANGVDVIVQENNGFTPTPAVSN 128 (549) T ss_dssp SHHHHHHHHHHHHHHHHHTTCCSCEEE-EECS--CTTH--------HHHHHHHHHHHHHTTCCEEEEGGGCCCCHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC--CCCH--------HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH T ss_conf 999999999999999986399980999-9789--6158--------9999999999997799799958888368089999 Q ss_pred -HH----H---HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH----HHCCCCCEEEEE---CC Q ss_conf -65----0---215788225762899999998505977998367778999999999999----725878089951---46 Q gi|254780669|r 131 -IA----D---SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKL----HAHGAKDVLFCE---RG 195 (301) Q Consensus 131 -~~----~---~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki----~~~Gn~~i~lcE---RG 195 (301) +. . +.--+.|-| +.|.. ...|--+.-+.|..++.+. ...+|.. ......++.-.. .. T Consensus 129 av~~~~~~~~~~~~GimITA--SHNP~-----~~NGiK~~~~~G~~l~~~~-~~~Ie~~~~~~~~~~~~~~~~~~~~~~~ 200 (549) T 2fuv_A 129 AILVHNKKGGPLADGIVITP--SHNPP-----EDGGIKYNPPNGGPADTNV-TKVVEDRANALLAGGLQGVKRISLDAAM 200 (549) T ss_dssp HHHHHHHTCSSCCEEEEECC--TTCCT-----TCEEEEEECTTSSCCCHHH-HHHHHHHHHHHHHTTTTTCCCCCHHHHH T ss_pred HHHHHCCCCCCCCCEEEEEC--CCCCC-----CCCCEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99996013677342599964--78983-----2276676348986464578-9999999976532023334334421113 Q ss_pred ---------CCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf ---------54440100000001068885187168711777421223453212638899999999997189889998369 Q gi|254780669|r 196 ---------TSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQ 266 (301) Q Consensus 196 ---------~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp 266 (301) ..-.|-+.+.+.-.....++.+++|++||.|.+ -..+++.+.. .+|++-..+..+| T Consensus 201 ~~~~i~~~d~~~~Y~~~l~~~i~~~~i~~~~lkIvvD~~nG~------------~~~~~~~il~---~lg~~~~~~~~~~ 265 (549) T 2fuv_A 201 ASGHVKAVDLVQPFVEGLADIVDMAAIQKAGLTLGVDPLGGS------------GIEYWKRIAE---HYKLNLTLVNDQV 265 (549) T ss_dssp HTSCEEEECCHHHHHHHGGGTSCHHHHHHHTCCEEEECTTCT------------THHHHHHHHH---HTTCCEEESCCCC T ss_pred CCCEEEECCHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCC------------CCCCCCHHHH---HCCCCCCCCCCCC T ss_conf 577067421188999999887140224226976998457765------------3556612433---2166421122234 Q ss_pred CH Q ss_conf 83 Q gi|254780669|r 267 DP 268 (301) Q Consensus 267 ~P 268 (301) +| T Consensus 266 ~~ 267 (549) T 2fuv_A 266 DQ 267 (549) T ss_dssp CT T ss_pred CC T ss_conf 56 No 182 >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* Probab=36.22 E-value=21 Score=15.52 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=8.9 Q ss_pred CHHHHHHHHHH-CCEEEE Q ss_conf 89999876502-157882 Q gi|254780669|r 124 TEQQCEAIADS-VDILQI 140 (301) Q Consensus 124 ~~~~~e~~~~~-vDilQI 140 (301) +++|++.+++. +|.+-+ T Consensus 137 d~~qi~~a~~~Gad~IEl 154 (243) T 1m5w_A 137 DEEQIKAAAEVGAPFIEI 154 (243) T ss_dssp CHHHHHHHHHTTCSEEEE T ss_pred CHHHHHHHHHCCCCEEEE T ss_conf 889999998719995874 No 183 >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} Probab=35.85 E-value=21 Score=15.48 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=82.7 Q ss_pred CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--H Q ss_conf 27976997069995486349999999999999996553399706601557688666322245671248889998866--5 Q gi|254780669|r 36 QVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKK--K 113 (301) Q Consensus 36 ~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~--~ 113 (301) -+..+.+-+|-+|.=+ .. ..+.+..+.+.+ +-+. ....+. ....+.+ +-++..+.+++ . T Consensus 10 ~~~~~~~m~Ly~IT~~-~~-~~~~l~~i~~~~-~~gv---~~iqlR--------~K~~~~~-----e~~~l~~~l~~~~~ 70 (221) T 1yad_A 10 LVPRGSHMELHAITDD-SK-PVEELARIIITI-QNEV---DFIHIR--------ERSKSAA-----DILKLLDLIFEGGI 70 (221) T ss_dssp -------CEEEEECCS-CS-CHHHHHHHHHHH-GGGC---SEEEEC--------CTTSCHH-----HHHHHHHHHHHTTC T ss_pred CCCCCCCCEEEEECCC-CC-CHHHHHHHHHHH-HCCC---CEEEEC--------CCCCCHH-----HHHHHHHHHHHHHC T ss_conf 6778657889998699-87-879999999999-7899---899976--------8997999-----99999999998617 Q ss_pred HCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 28768852288999987650-21578822576289999999850597799836777899999999999972587808995 Q gi|254780669|r 114 YGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 114 ~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) ++.+++ |++. ++.+.+ .+|-+.+|...+...+. +..- .++.|-+-- -++++...| ...|.+-+.+ T Consensus 71 ~~~~li--Ind~--~~lA~~~~adGvHlg~~d~~~~~~-r~~~-~~~iIG~S~---h~~~e~~~a----~~~gaDYi~~- 136 (221) T 1yad_A 71 DKRKLV--MNGR--VDIALFSTIHRVQLPSGSFSPKQI-RARF-PHLHIGRSV---HSLEEAVQA----EKEDADYVLF- 136 (221) T ss_dssp CGGGEE--EESC--HHHHHTTTCCEEEECTTSCCHHHH-HHHC-TTCEEEEEE---CSHHHHHHH----HHTTCSEEEE- T ss_pred CCCEEE--EECC--HHHHHHCCCCEEECCCCCCCHHHH-HHHC-CCCEEEEEC---CCHHHHHHH----HHCCCCEEEE- T ss_conf 698599--9697--999986499888415576689999-8645-487898544---459999999----8659997830- Q ss_pred ECCCCCCCHH----HCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE--- Q ss_conf 1465444010----0000001068885-1871687117774212234532126388999999999971898899983--- Q gi|254780669|r 193 ERGTSFGYNT----LVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET--- 264 (301) Q Consensus 193 ERG~~fgy~~----lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~--- 264 (301) |..|...+ -...+..+..+.+ ...||+. .||-. +.-+..++..|++|+-+=. T Consensus 137 --gpif~T~tK~~~~~~g~~~l~~~~~~~~~PvvA---------------iGGI~---~~ni~~~~~~Ga~gvav~s~I~ 196 (221) T 1yad_A 137 --GHVFETDCKKGLEGRGVSLLSDIKQRISIPVIA---------------IGGMT---PDRLRDVKQAGADGIAVMSGIF 196 (221) T ss_dssp --ECCC----------CHHHHHHHHHHHCCSCEEE---------------ESSCC---GGGHHHHHHTTCSEEEESHHHH T ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE---------------ECCCC---HHHHHHHHHCCCCEEEEEHHHH T ss_conf --677666666531033678887640035676798---------------67989---9999999980998899849997 Q ss_pred -CCCHHHC Q ss_conf -6983347 Q gi|254780669|r 265 -HQDPDNA 271 (301) Q Consensus 265 -Hp~P~~A 271 (301) .+||.++ T Consensus 197 ~~~dp~~~ 204 (221) T 1yad_A 197 SSAEPLEA 204 (221) T ss_dssp TSSSHHHH T ss_pred CCCCHHHH T ss_conf 79999999 No 184 >2o7s_A DHQ-SDH, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase; NADPH, dehydroshikimate, bifunctional enzyme, oxidoreductase; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Probab=35.57 E-value=22 Score=15.45 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=70.3 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCH Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665287688522889 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTE 125 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~ 125 (301) .+|.-|.+-++.|.++.-+..+++.+.++. =+ |- +-+... ..++-+..+++++++|++--+... T Consensus 5 ~~icvpl~~~~~~e~~~~~~~~~~~gaD~v---El--------R~--D~l~~~---~~~~~l~~~~~~~~~piI~T~R~~ 68 (523) T 2o7s_A 5 SLICAPVMADSIDKMVIETSKAHELGADLV---EI--------RL--DWLKDF---NPLEDLKTIIKKSPLPTLFTYRPK 68 (523) T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTCSEE---EE--------EG--GGCSSC---CHHHHHHHHHHHCSSCEEEECCBG T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEE---EE--------EE--ECCCCC---CCHHHHHHHHHHCCCCEEEEECCH T ss_conf 889999588999999999999764499989---99--------85--023255---809999999983899389995777 Q ss_pred -----------HHHHH---HHHH-CCEEEECHHHCCCHHHHHHHHH---CCCEEEEECCC---CCCHHHHHHHHHHHHHC Q ss_conf -----------99987---6502-1578822576289999999850---59779983677---78999999999999725 Q gi|254780669|r 126 -----------QQCEA---IADS-VDILQIPALLCRQTDLLTAAAQ---TGRVINVKKGQ---FLSPWEMHNILQKLHAH 184 (301) Q Consensus 126 -----------~~~e~---~~~~-vDilQIgA~~~rqtdLl~a~a~---t~kpV~iKkgq---~~s~~e~~~a~eki~~~ 184 (301) +..+. +.+. +|.+-|-.+.- -++++.+.. .+..|.+-.+- ..+.+++....+++.+. T Consensus 69 ~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~--~~~~~~l~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~ 146 (523) T 2o7s_A 69 WEGGQYEGDENERRDVLRLAMELGADYIDVELQVA--SEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQT 146 (523) T ss_dssp GGTSSBCSCHHHHHHHHHHHHHHTCSEEEEEHHHH--HHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHHHHTT T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 77999889999999999999997999999988885--8999999984348987999967899998866799999999974 Q ss_pred CCCCEEEE Q ss_conf 87808995 Q gi|254780669|r 185 GAKDVLFC 192 (301) Q Consensus 185 Gn~~i~lc 192 (301) |.+=+-++ T Consensus 147 gadivKia 154 (523) T 2o7s_A 147 GADIVKIA 154 (523) T ss_dssp TCSEEEEE T ss_pred CCCEEEEE T ss_conf 99968885 No 185 >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} Probab=34.96 E-value=22 Score=15.39 Aligned_cols=217 Identities=15% Similarity=0.173 Sum_probs=112.4 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC-----CCCCCC-CCCCCCHHHHHHHHHHHHH-HCCE Q ss_conf 999548634999999999999999655339-9706601557688-----666322-2456712488899988665-2876 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKAN-----RSSLAG-KRGVGLKKGREIFRDLKKK-YGFP 117 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKan-----RtS~~s-frG~Gle~gL~il~e~k~~-~glp 117 (301) .+.||= -+.|...++++.+.+.|.++. +|.=|. -+.|- +++..+ .+|..+++.++++++++.+ ...| T Consensus 25 yltaG~---P~~e~s~~~l~~l~~~G~D~iEiGiPfS--DPvaDGpvIq~a~~raL~~G~~~~~~~~~~~~~r~~~~~~p 99 (271) T 3nav_A 25 FVTIGD---PNPEQSLAIMQTLIDAGADALELGMPFS--DPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETP 99 (271) T ss_dssp EEETTS---SCHHHHHHHHHHHHHTTCSSEEEECCCC--CGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSC T ss_pred EEECCC---CCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 983718---9878999999999976999999789988--87776899999988877648607667667766420267888 Q ss_pred EEEE--CC-----CH-HHHHHHHHH-CCEEEECHHHC-CCHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 8852--28-----89-999876502-15788225762-89999999850597-799836777899999999999972587 Q gi|254780669|r 118 ILTD--VH-----TE-QQCEAIADS-VDILQIPALLC-RQTDLLTAAAQTGR-VINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 118 v~Te--V~-----~~-~~~e~~~~~-vDilQIgA~~~-rqtdLl~a~a~t~k-pV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) ++-= .. .. +-++.+++. +|-+=||---. ...++..++.+.+. +|.+=-+ .++.+. .+++.+... T Consensus 100 ~vlM~Y~N~i~~~G~e~F~~~~~~~Gv~GviipDLp~ee~~~~~~~~~~~gl~~I~lvsp--tt~~~R---i~~i~~~a~ 174 (271) T 3nav_A 100 IGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPP--TASDET---LRAVAQLGK 174 (271) T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECT--TCCHHH---HHHHHHHCC T ss_pred EEEEEEEHHHHHCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC--CCHHHH---HHHHHHCCC T ss_conf 799975046655289999999987699489945898156599999987679717999446--755889---999986188 Q ss_pred CCEEEEEC-CCCCCCHH-HCCCCC-CCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf 80899514-65444010-000000-10688851-8716871177742122345321263889999999999718988999 Q gi|254780669|r 187 KDVLFCER-GTSFGYNT-LVTDMR-SIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFL 262 (301) Q Consensus 187 ~~i~lcER-G~~fgy~~-lvvD~~-~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfi 262 (301) .=|.+..+ |+| |-.+ +..++. .+..+|+. ..||++---=+ .++ .++.++..++||+.+ T Consensus 175 gfiY~vs~~GvT-G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~-------------~~e----~v~~~~~~~ADGvVV 236 (271) T 3nav_A 175 GYTYLLSRAGVT-GAETKANMPVHALLERLQQFDAPPALLGFGIS-------------EPA----QVKQAIEAGAAGAIS 236 (271) T ss_dssp SCEEECCCC---------CCHHHHHHHHHHHHTTCCCEEECSSCC-------------SHH----HHHHHHHTTCSEEEE T ss_pred CCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEC-------------CHH----HHHHHHHCCCCEEEE T ss_conf 738985055567-87766650289999987533689728983018-------------899----999998738999998 Q ss_pred EECCCH--HHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 836983--347978201868899999999999 Q gi|254780669|r 263 ETHQDP--DNAPSDGPNMINIKDLPKLLSQLL 292 (301) Q Consensus 263 E~Hp~P--~~AlsD~~q~l~l~~l~~ll~~l~ 292 (301) =++--- ++...++ +-.++.+.+++++++ T Consensus 237 GSaiv~~i~~~~~~~--~~~~~~v~~~~~~lk 266 (271) T 3nav_A 237 GSAVVKIIETHLDNP--AKQLTELANFTQAMK 266 (271) T ss_dssp SHHHHHHHHHTTTCH--HHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCH--HHHHHHHHHHHHHHH T ss_conf 879999998705367--899999999999999 No 186 >2aam_A Hypothetical protein TM1410; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MSE UNL; 2.20A {Thermotoga maritima} SCOP: c.1.8.15 Probab=33.62 E-value=23 Score=15.25 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=46.5 Q ss_pred CHHHHHHHH----HC--CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCC-CC----CCCHHHHH Q ss_conf 999999985----05--977998367778999999999999725878089951465444010000-00----01068885 Q gi|254780669|r 147 QTDLLTAAA----QT--GRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVT-DM----RSIPIMTS 215 (301) Q Consensus 147 qtdLl~a~a----~t--~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvv-D~----~~i~~lk~ 215 (301) +.+++..++ .. +..|.++||..+-...--.....+ +-+.-|--.+..|...-- |. .-+..+++ T Consensus 165 m~~~l~~L~~~~r~r~P~~~ii~NnG~ell~~~~~~l~~~v------dgv~~Eslf~~~~~~~~~~d~~~~l~~l~~~~~ 238 (309) T 2aam_A 165 MINFVLEIAEYVRERKPDMLIIPQNGENILDFDDGQLASTV------SGWAVENLFYLKTIPLEENETKSRLEYLIRLNR 238 (309) T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEBSCGGGGGGCCSHHHHHC------SEEEEESSSEETTEECCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCHHHHHHC------CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999997589958996475787634421343110------358875640487765799999999999999997 Q ss_pred HCCCEE----ECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 187168----7117774212234532126388999999999971898899 Q gi|254780669|r 216 MGVPVI----FDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIF 261 (301) Q Consensus 216 ~~~PVi----~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlf 261 (301) .+.||+ +||.+. ..-+++-+..+++.+.+.|.--.. T Consensus 239 ~G~pV~~iDY~~~~~~----------~~~~~~~~~~~~~~~~~~GF~pYV 278 (309) T 2aam_A 239 KGKFILSVDYVDDGSD----------SFENISRILDYYEKAKRNGCIPYA 278 (309) T ss_dssp TTCEEEEEEEEECSSC----------BHHHHHHHHHHHHHHHHTTEEEEE T ss_pred CCCEEEEEECCCCCCC----------HHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 6992999973799871----------244499999999999977998884 No 187 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Probab=33.59 E-value=23 Score=15.25 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=75.8 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE-ECCCHHHHHHHHH Q ss_conf 999999999999999655339970660155768866632224567124888999886652876885-2288999987650 Q gi|254780669|r 55 ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT-DVHTEQQCEAIAD 133 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T-eV~~~~~~e~~~~ 133 (301) .+.|++..+++.|.+.|.+. +. -.+|.+ .+++.+++++++ ++-+-- -|.+.+|++.+.+ T Consensus 22 ~~~~~a~~~~~al~~~Gi~~---------iE-------itl~tp---~a~~~i~~l~~~-~~~iGaGTV~~~~~~~~a~~ 81 (207) T 2yw3_A 22 RGGEDLLGLARVLEEEGVGA---------LE-------ITLRTE---KGLEALKALRKS-GLLLGAGTVRSPKEAEAALE 81 (207) T ss_dssp CSCCCHHHHHHHHHHTTCCE---------EE-------EECSST---HHHHHHHHHTTS-SCEEEEESCCSHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCE---------EE-------EECCCC---HHHHHHHHHCCC-CCEEEEHHCCCHHHHHHHHH T ss_conf 99999999999999879988---------99-------968992---299999985457-85893112057789999998 Q ss_pred -HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf -2157882257628999999985059779983677789999999999997258780899 Q gi|254780669|r 134 -SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 134 -~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) .++.+=-|. -+.++++.+.+.+.|+. +=-+||.|...|.++ |.+-+-+ T Consensus 82 aGa~FivSP~---~~~~v~~~a~~~~i~~i---PGv~TpsEi~~A~~~----G~~~vK~ 130 (207) T 2yw3_A 82 AGAAFLVSPG---LLEEVAALAQARGVPYL---PGVLTPTEVERALAL----GLSALKF 130 (207) T ss_dssp HTCSEEEESS---CCHHHHHHHHHHTCCEE---EEECSHHHHHHHHHT----TCCEEEE T ss_pred CCCCEEECCC---CCHHHHHHHHHCCCCEE---CCCCCHHHHHHHHHC----CCCEEEE T ss_conf 0999898588---86999999996299751---787999999999976----9997986 No 188 >3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Probab=33.55 E-value=23 Score=15.24 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999999999999655339970660 Q gi|254780669|r 58 DHAFMIAEKLYAICQSLNIGLVYK 81 (301) Q Consensus 58 e~~~~~A~~lk~~~~~~~~~~ifK 81 (301) +.+.+.+..+.++|-+.....+|- T Consensus 131 ~~~~e~~~~~lA~GlDp~kt~i~~ 154 (392) T 3jxe_A 131 RWAYDNILDIIAVGFDPDKTFIFQ 154 (392) T ss_dssp HHHHHHHHHHHTTCCCTTSEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 999999999998089920359997 No 189 >1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A* Probab=32.81 E-value=24 Score=15.17 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=60.7 Q ss_pred CCCHHHHHHCCCCCCEEEE-CCCEEEECCCCCCEEECCCCCEEEEECCCCCC-----------CHHHHHHHHHHHHHHHH Q ss_conf 5203445430468761783-17706835787727976997069995486349-----------99999999999999655 Q gi|254780669|r 5 YPQNLEEKQRRIDKNHMIH-TNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIE-----------SHDHAFMIAEKLYAICQ 72 (301) Q Consensus 5 ~pykl~~~~~~i~~~~~~~-~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiE-----------S~e~~~~~A~~lk~~~~ 72 (301) .+..+..|-+|+..+.++. ...+.++-. ++-| .|+|+.-|+..-| |.+.+.+.++.+.+.|. T Consensus 5 ~~~~~~~R~RRlR~~~~iR~Lv~Et~Ls~-~dLI-----~PiFV~eg~~~~~~I~SMPGi~R~SiD~L~~~ie~~~~lGI 78 (328) T 1w1z_A 5 DLLNIVHRPRRLRRTAALRNLVQENTLTV-NDLV-----FPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEECKELYDLGI 78 (328) T ss_dssp -----CCCGGGGTSSHHHHHHHCCCCCCG-GGEE-----EEEEEESSSSCEEEETTEEEEEEEEHHHHHHHHHHHHHHTC T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCH-HHCE-----EEEEEEECCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCC T ss_conf 53643556764679879999987079888-9966-----20699528997235689998346679999999999998699 Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEEECCCHH Q ss_conf 339970660155768866632224567124888999886652-876885228899 Q gi|254780669|r 73 SLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILTDVHTEQ 126 (301) Q Consensus 73 ~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~TeV~~~~ 126 (301) +...=+- .|.- |. -.--.+|..-|+ -.+..+.+|++| ++-|+|||.-.. T Consensus 79 ~av~LFp-v~~~-K~-~~gs~A~n~d~l--v~rAIr~iK~~fpdl~vi~DVcLc~ 128 (328) T 1w1z_A 79 QGIDLFG-IPEQ-KT-EDGSEAYNDNGI--LQQAIRAIKKAVPELCIMTDVALDP 128 (328) T ss_dssp CEEEEEE-CCSS-CC-SSCGGGGCTTSH--HHHHHHHHHHHSTTSEEEEEECSTT T ss_pred CEEEEEE-CCCC-CC-CCCCCCCCCCCH--HHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 8899972-4555-56-785202697537--9999999985489858986220156 No 190 >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} Probab=32.77 E-value=24 Score=15.16 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=70.9 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 48889998866528768852288999987650-21578822576289999999850597799836777899999999999 Q gi|254780669|r 102 KGREIFRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~ek 180 (301) .+-+-|.++=++-.+-..--++++-++-.+.+ ..+.+.+.-+-+--+-+ .+..+.|= --..+..++...+++ T Consensus 52 ~~A~kLr~LL~~~~~v~~~Ga~d~~~A~~~~~aGf~aiY~SG~~vsA~~~---~a~~~~PD----~gl~~~~ev~~~v~~ 124 (439) T 3i4e_A 52 RGAEKLWTLINNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDAN---VAGEMYPD----QSLYPANSVPLVVKR 124 (439) T ss_dssp HHHHHHHHHHHHSSCEEEEBCCSHHHHHHHHHHTCSCEEECHHHHHHHTC---TTCCCCCS----SSCSCTTHHHHHHHH T ss_pred HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCHHHHCCCC---CCCCCCCC----CCCCCHHHHHHHHHH T ss_conf 99999999970799686266567899999998299889965676633111---35789886----242408899999999 Q ss_pred HHHCCC--CCEEEEECCCCCCCHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 972587--808995146544401000000010688851871687117774212234532126388999999999971898 Q gi|254780669|r 181 LHAHGA--KDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIA 258 (301) Q Consensus 181 i~~~Gn--~~i~lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~d 258 (301) |...-. +++-+.|+... + ..-.+| +-+|||.|.-..- |...-|-.+.|.-+.+|+. T Consensus 125 I~~a~~~ad~~~~~~~~~~-~-~~~~~d---------~~iPIIADaDtGf-----------Gg~~nv~rtvk~~i~AGaA 182 (439) T 3i4e_A 125 INNTLTRADQIQWSEGKNP-G-DEGYVD---------FFAPIVADAEAGF-----------GGVLNAFELMKAMIEAGAS 182 (439) T ss_dssp HHHHHHHHHHHHHHTTCCT-T-STTCCC---------CCCCEEEECTTTT-----------SSHHHHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHHHCCCC-C-CCCCCC---------CCCCEEEECCCCC-----------CHHHHHHHHHHHHHHCCCC T ss_conf 9999888999988530354-4-333322---------3453353057787-----------7499999999999974987 Q ss_pred EEEEEECC-CHHHC-CCCCCCCCCHHHHHHHHHH Q ss_conf 89998369-83347-9782018688999999999 Q gi|254780669|r 259 GIFLETHQ-DPDNA-PSDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 259 GlfiE~Hp-~P~~A-lsD~~q~l~l~~l~~ll~~ 290 (301) |+.||=.- .|++. --+|..-++.+++-.-|+- T Consensus 183 gihiEDQ~~~~KkCGH~~GK~lVp~~e~i~ki~A 216 (439) T 3i4e_A 183 GVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTA 216 (439) T ss_dssp EEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHH T ss_pred EEEECCCCCCCCCEECCCCCEEECHHHHHHHHHH T ss_conf 8864288874001123699876169999999999 No 191 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Probab=32.04 E-value=25 Score=15.09 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=58.8 Q ss_pred CCCHHHHHHHHHHHHHHC-CEEEEECC---CHHH-HH---HHHH-HCCEEEEC--------HH-----HCCCHHHHHHHH Q ss_conf 671248889998866528-76885228---8999-98---7650-21578822--------57-----628999999985 Q gi|254780669|r 98 VGLKKGREIFRDLKKKYG-FPILTDVH---TEQQ-CE---AIAD-SVDILQIP--------AL-----LCRQTDLLTAAA 155 (301) Q Consensus 98 ~Gle~gL~il~e~k~~~g-lpv~TeV~---~~~~-~e---~~~~-~vDilQIg--------A~-----~~rqtdLl~a~a 155 (301) .|.+.-++.+.++|+++. .+++.-++ +.++ .+ .+.+ .+|.|.+- .+ ..++.+++.++- T Consensus 616 ~~~~~~~~~i~~~k~~~p~~~~Iasi~~~~~~ed~~~la~~~e~~gaD~iElNiScPn~~~~r~~g~~~g~~p~~~~~i~ 695 (1025) T 1gte_A 616 KTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNIC 695 (1025) T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 64999999999987517888269770799999999999999875499989997999999884322310146999999999 Q ss_pred H-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 0-----59779983677789999999999997258780899514 Q gi|254780669|r 156 Q-----TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCER 194 (301) Q Consensus 156 ~-----t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301) + +++||.+|=.+..+ ++...++.+...|.+-|.++-+ T Consensus 696 ~~Vr~~~~iPv~vKLsP~~t--di~~ia~aa~~~Gadgv~~iNT 737 (1025) T 1gte_A 696 RWVRQAVQIPFFAKLTPNVT--DIVSIARAAKEGGADGVTATNT 737 (1025) T ss_dssp HHHHHHCSSCEEEEECSCSS--CHHHHHHHHHHHTCSEEEECCC T ss_pred HHHHHCCCCCEEEECCCCCH--HHHHHHHHHHHCCCCEEEEECC T ss_conf 99975789978998288816--2999999999849989999677 No 192 >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A* Probab=31.85 E-value=25 Score=15.07 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=52.7 Q ss_pred HHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE---------EECCCCCCCHHHCCCCCCCHHH Q ss_conf 7628999999985059779983677789999999999997258780899---------5146544401000000010688 Q gi|254780669|r 143 LLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLF---------CERGTSFGYNTLVTDMRSIPIM 213 (301) Q Consensus 143 ~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~l---------cERG~~fgy~~lvvD~~~i~~l 213 (301) |..|..|+..-......|.|+.-. .+ .+|+..+.++.- .++-| +|.|-.+.++.| -..+..+ T Consensus 50 RHI~~~Dv~~l~~~~~~~~NlE~~--~~-~e~i~ia~~~kP---~qvtLVPe~r~elTTegGld~~~~~L---~~~i~~l 120 (260) T 3o6c_A 50 RHAQDFDLENIIKFCKSPVNLECA--LN-DEILNLALKLKP---HRVTLVPEKREELTTEGGLCLNHAKL---KQSIEKL 120 (260) T ss_dssp SSSCHHHHHHHHHHCSSCEEEEEC--SC-HHHHHHHHHHCC---SEEEECCCSGGGBCTTSSBCTTCTTH---HHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCCCCC--CC-HHHHHHHHHCCC---CEEEECCCCCCCCCCCCCCCCHHHHH---HHHHHHH T ss_conf 888799999888612574356889--98-589999996699---75897668866432468844006779---9999986 Q ss_pred HHHCC--CEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH Q ss_conf 85187--168711777421223453212638899999999997189889998369833 Q gi|254780669|r 214 TSMGV--PVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 214 k~~~~--PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) |+.+. -+.+||.= ....+|...|+|- ||-|.-|= T Consensus 121 k~~gIrVSLFIDPd~--------------------~~i~~A~~~Gad~--VElhTG~Y 156 (260) T 3o6c_A 121 QNANIEVSLFINPSL--------------------EDIEKSKILKAQF--IELHTGHY 156 (260) T ss_dssp HHTTCEEEEEECSCH--------------------HHHHHHHHTTCSE--EEECCHHH T ss_pred HHCCCEEEEEECCCH--------------------HHHHHHHHCCCCE--EEEECHHH T ss_conf 534962899968998--------------------9999984279898--99834566 No 193 >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A Probab=31.48 E-value=25 Score=15.02 Aligned_cols=155 Identities=18% Similarity=0.264 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHCCEEE--------EECC-----CHHHHHHHHH-HCCEEEECHHHCCCHHHH-------------HHH Q ss_conf 488899988665287688--------5228-----8999987650-215788225762899999-------------998 Q gi|254780669|r 102 KGREIFRDLKKKYGFPIL--------TDVH-----TEQQCEAIAD-SVDILQIPALLCRQTDLL-------------TAA 154 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~--------TeV~-----~~~~~e~~~~-~vDilQIgA~~~rqtdLl-------------~a~ 154 (301) .-+++++++.++..+|+. .||- ..+++..+.. .+|=+=|++...++.+++ +++ T Consensus 314 ~~~~~i~~ia~~~~iPltvGGGIrsi~die~~~~~~~e~A~~ll~~GadKV~inS~Av~~pe~~~e~~~~~~n~~~i~~~ 393 (555) T 1jvn_A 314 PMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETI 393 (555) T ss_dssp HHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHH T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHCCCCHHHHHH T ss_conf 08999999986468878984771564673310110279999999779987998837860907668887611681689999 Q ss_pred HHC-C--C---EEEEECCC--------------------------------------CCCHHHHHHHHHHHHHCCCCCEE Q ss_conf 505-9--7---79983677--------------------------------------78999999999999725878089 Q gi|254780669|r 155 AQT-G--R---VINVKKGQ--------------------------------------FLSPWEMHNILQKLHAHGAKDVL 190 (301) Q Consensus 155 a~t-~--k---pV~iKkgq--------------------------------------~~s~~e~~~a~eki~~~Gn~~i~ 190 (301) ++. | . -|-+||.. .+++.+|. +++.+.|.-.|+ T Consensus 394 a~~fGsQ~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ggr~~t~~~~~~~~---~~~~~~GaGEIl 470 (555) T 1jvn_A 394 SKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELT---RACEALGAGEIL 470 (555) T ss_dssp HHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHH---HHHHHTTCCEEE T ss_pred HHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCCHHHHH---HHHHHCCCCEEE T ss_conf 99819832999998762356654444443100123467776531699997188062899999999---999966998999 Q ss_pred EEEC---CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE-- Q ss_conf 9514---654440100000001068885-1871687117774212234532126388999999999971898899983-- Q gi|254780669|r 191 FCER---GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET-- 264 (301) Q Consensus 191 lcER---G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~-- 264 (301) ++-= |+.-||+ +.-+..+++ ...|||.= || .|.-.++.. +-...|+||+.+=. T Consensus 471 ltsId~DGt~~G~D-----l~l~~~i~~~~~iPvIas--------GG----~g~~~di~~----~~~~~~~~av~~~s~f 529 (555) T 1jvn_A 471 LNCIDKDGSNSGYD-----LELIEHVKDAVKIPVIAS--------SG----AGVPEHFEE----AFLKTRADACLGAGMF 529 (555) T ss_dssp ECCGGGTTTCSCCC-----HHHHHHHHHHCSSCEEEC--------SC----CCSHHHHHH----HHHHSCCSEEEESHHH T ss_pred EEEECCCCCCCCCC-----HHHHHHHHHHCCCCEEEE--------CC----CCCHHHHHH----HHHHCCCEEEEEEHHH T ss_conf 96254778888769-----999999997589899997--------89----899999999----9986897499880066 Q ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 69833479782018688999999999 Q gi|254780669|r 265 HQDPDNAPSDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 265 Hp~P~~AlsD~~q~l~l~~l~~ll~~ 290 (301) |- ..+++.++++.|.+ T Consensus 530 h~----------~~~~i~~~K~~L~~ 545 (555) T 1jvn_A 530 HR----------GEFTVNDVKEYLLE 545 (555) T ss_dssp HT----------TSCCHHHHHHHHHH T ss_pred HC----------CCCCHHHHHHHHHH T ss_conf 77----------99899999999998 No 194 >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Probab=31.24 E-value=25 Score=15.00 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=69.5 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHH-HHHHHC-----CEEEECHHHCCCHHHHHHHHHC-CCEEEEE---CCCCCCH Q ss_conf 4888999886652876885228899998-765021-----5788225762899999998505-9779983---6777899 Q gi|254780669|r 102 KGREIFRDLKKKYGFPILTDVHTEQQCE-AIADSV-----DILQIPALLCRQTDLLTAAAQT-GRVINVK---KGQFLSP 171 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~TeV~~~~~~e-~~~~~v-----DilQIgA~~~rqtdLl~a~a~t-~kpV~iK---kgq~~s~ 171 (301) .-.+.=+++++.+|.+-..=|..-..+- .+.... |-+-+|++.|.-+- .++... .+||.+- ....+++ T Consensus 37 ~v~~fE~~~a~~~g~~~av~~~sGT~Al~lal~al~~~~gdeVi~p~~t~~a~~--~ai~~~G~~pv~~Did~~~~~id~ 114 (373) T 3frk_A 37 EDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATA--LAVSYTGAKPIFVEPDIRTYNIDP 114 (373) T ss_dssp HHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHH--HHHHHHSCEEEEECEETTTTEECG T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH--HHHHHCCCCEEEECCCCCCCCCCH T ss_conf 799999999999783969996369999999999849999699996787403013--267514674057526888677399 Q ss_pred HHHHHHHHHHHHCCCCC-EEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHH Q ss_conf 99999999997258780-8995146544401000000010688-851871687117774 Q gi|254780669|r 172 WEMHNILQKLHAHGAKD-VLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSV 228 (301) Q Consensus 172 ~e~~~a~eki~~~Gn~~-i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~ 228 (301) ++...++ . .+.. |++.+ .||+ ..|+..+-.+ ++.++|||.|+.||. T Consensus 115 ~~l~~~i----t-~~tkaIi~vh---~~G~---~~d~~~i~~ia~~~~i~lIeD~A~a~ 162 (373) T 3frk_A 115 SLIESAI----T-EKTKAIIAVH---LYGQ---PADMDEIKRIAKKYNLKLIEDAAQAH 162 (373) T ss_dssp GGTGGGC----C-TTEEEEEEEC---CTTC---CCCHHHHHHHHHHHTCEEEEECTTCT T ss_pred HHHHHHC----C-CCCEEEEEEC---CCCC---CCCHHHHHHHHHHCCCEEEEECCCHH T ss_conf 9999853----6-8974999868---8877---14899999999985998999981123 No 195 >2hjp_A Phosphonopyruvate hydrolase; phosporus- carbon bond cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Probab=30.96 E-value=26 Score=14.97 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=37.6 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCC------------HHHHHHHHH----CCCEEEEE--CCC Q ss_conf 998866528768852288999987650-21578822576289------------999999850----59779983--677 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQ------------TDLLTAAAQ----TGRVINVK--KGQ 167 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rq------------tdLl~a~a~----t~kpV~iK--kgq 167 (301) |++.-+.=++-++-.++|+-.+-.+.+ ..+.++++.+-+-. ++++..+.+ ++.||.+- .|+ T Consensus 7 lr~l~~~~~~~~~p~~~D~~SAr~~e~aGf~ai~~sg~~~aas~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~aD~d~Gy 86 (290) T 2hjp_A 7 LRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGF 86 (290) T ss_dssp HHHHHHHCCCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTT T ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCC T ss_conf 99997279978855776899999999839999996589999866999855341445999999986115787799876667 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 789999999999997258780899 Q gi|254780669|r 168 FLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 168 ~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) . .+.+....++.+...|.--|.+ T Consensus 87 G-~~~~v~~tv~~~~~aG~agi~I 109 (290) T 2hjp_A 87 G-NAVNVHYVVPQYEAAGASAIVM 109 (290) T ss_dssp S-SHHHHHHHHHHHHHHTCSEEEE T ss_pred C-CHHHHHHHHHHHHHCCCCEEEE T ss_conf 7-3489999999999807918997 No 196 >2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi} Probab=30.59 E-value=26 Score=14.93 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=46.6 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHH-HCCCEEEEECC Q ss_conf 99988665287688522889999876502157882257628999999985-05977998367 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAA-QTGRVINVKKG 166 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a-~t~kpV~iKkg 166 (301) -+++.-++.|+++.-+-....+++...+..|++-++--.....+=+++.+ +.+.||.+=.+ T Consensus 23 km~~~a~~~~~~~~I~A~~~~~~~~~~~~~DviLL~PQv~y~~~~i~~~~~~~~ipV~~I~~ 84 (109) T 2l2q_A 23 RIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINT 84 (109) T ss_dssp HHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCH T ss_pred HHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCEEEECH T ss_conf 99999998699779999768999866229989999973888899999984157982999785 No 197 >3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- 2, protein structure initiative; HET: MSE; 1.72A {Bacteroides vulgatus atcc 8482} Probab=30.47 E-value=18 Score=15.94 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=30.5 Q ss_pred HHHHHHHCCCEEEEEECCCHHHCCCCCCCCC---CHHHHHHHHHHHHHHHHHHH Q ss_conf 9999971898899983698334797820186---88999999999999999885 Q gi|254780669|r 249 AKAAVAIGIAGIFLETHQDPDNAPSDGPNMI---NIKDLPKLLSQLLAIDKIIK 299 (301) Q Consensus 249 a~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l---~l~~l~~ll~~l~~i~~~vk 299 (301) ..+|..+|+..+.+-..+.+++.+.+...-+ ++.+|.++++. +...++ T Consensus 195 i~aA~~aG~~~I~v~~g~~~~~~l~~~~ad~vi~sl~dl~~~~~~---l~~~~~ 245 (247) T 3dv9_A 195 VQAGVAAGIFTIAVNTGPLHDNVLLNEGANLLFHSMPDFNKNWET---LQSALK 245 (247) T ss_dssp HHHHHHTTSEEEEECCSSSCHHHHHTTTCSEEESSHHHHHHHHHH---HHHHHC T ss_pred HHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCHHHHHHHHHH---HHHHHC T ss_conf 999999599899988999997889668999999999999999999---999745 No 198 >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} Probab=30.32 E-value=26 Score=14.90 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=58.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) ..+|+| ++-.|-+...+.|+..++.|.+... +.=|.|.+ +..+.-.++++++.+..++|++- T Consensus 74 ~~vi~g-v~~~s~~~~i~~a~~a~~~Gad~i~--v~pP~~~~-----------~~~~~~~~~~~~va~~~~~piii---- 135 (300) T 3eb2_A 74 VPVVAG-VASTSVADAVAQAKLYEKLGADGIL--AILEAYFP-----------LKDAQIESYFRAIADAVEIPVVI---- 135 (300) T ss_dssp SCBEEE-EEESSHHHHHHHHHHHHHHTCSEEE--EEECCSSC-----------CCHHHHHHHHHHHHHHCSSCEEE---- T ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHCCCCEEE--ECCCCCCC-----------CCHHHHHHHHHHHHHCCCCCEEE---- T ss_conf 858994-5766488999999777644981798--52653357-----------77799999999887558996798---- Q ss_pred HHHHHHHHHHCCEEEECHHH--CCCHHHHHHHHHCCCEEEEECC Q ss_conf 99998765021578822576--2899999998505977998367 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALL--CRQTDLLTAAAQTGRVINVKKG 166 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~--~rqtdLl~a~a~t~kpV~iKkg 166 (301) .++|.+. .-..+++..+++....|-+|-. T Consensus 136 -------------Yn~P~~tg~~l~~~~l~~L~~~~~vvgiK~s 166 (300) T 3eb2_A 136 -------------YTNPQFQRSDLTLDVIARLAEHPRIRYIKDA 166 (300) T ss_dssp -------------EECTTTCSSCCCHHHHHHHHTSTTEEEEEEC T ss_pred -------------EECCCCCCCCCHHHHHHHHCCCCCEEEEECC T ss_conf -------------7366334777369999997154788997479 No 199 >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 Probab=30.18 E-value=26 Score=14.88 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=90.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHH Q ss_conf 63499999999999999965533997066015576886663222456712488899988665287688522889999876 Q gi|254780669|r 52 CQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAI 131 (301) Q Consensus 52 CsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~ 131 (301) |.+-+.+. |+.+.+.+.+ .+|++|=+ .|-|-...+.+.++.+.+......--++.-.+++.+..+ T Consensus 6 CGit~~~d----~~~~~~~gad-~iGfif~~----------~SpR~v~~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~ 70 (203) T 1v5x_A 6 CGITRLED----ALLAEALGAF-ALGFVLAP----------GSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRL 70 (203) T ss_dssp CCCCCHHH----HHHHHHHTCS-EEEEECCT----------TCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHH T ss_pred CCCCCHHH----HHHHHHCCCC-EEEEECCC----------CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH T ss_conf 58994999----9999827999-89998279----------989977999999999861798539999776508999999 Q ss_pred H-H-HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCC Q ss_conf 5-0-2157882257628999999985059779983677789999999999997258780899514654440100000001 Q gi|254780669|r 132 A-D-SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRS 209 (301) Q Consensus 132 ~-~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~ 209 (301) . + -.|++|+-.. -..+.+..+.+.-..+-..+-...... ++. .. ..+.+|.+-+.. |.+.- .|..- T Consensus 71 ~~~~~~d~vQlHg~--e~~~~~~~l~~~~~iik~~~~~~~~~~------~~~-~~-~~~~~L~D~~~~-g~g~~-~~~~~ 138 (203) T 1v5x_A 71 MEEARLQVAQLHGE--EPPEWAEAVGRFYPVIKAFPLEGPARP------EWA-DY-PAQALLLDGKRP-GSGEA-YPRAW 138 (203) T ss_dssp HHHTTCSEEEECSC--CCHHHHHHHTTTSCEEEEEECSSSCCG------GGG-GS-SCSEEEEECSST-TSCCC-CCGGG T ss_pred HHHCCCCEEEECCC--CCHHHHHHHHHCCCCCEEECCCCHHHH------HHH-HH-HHHHEEECCCCC-CCCCC-CCHHH T ss_conf 87159865442698--798999998622882147535855568------875-21-156414213345-76766-66787 Q ss_pred CHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 06888518716871177742122345321263889999999999718988999836983347978201868899999999 Q gi|254780669|r 210 IPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLS 289 (301) Q Consensus 210 i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~ 289 (301) .........|+++ .||-+ .+-|. .++..+..|+=+- ...-..+-.-+++.++++++ T Consensus 139 ~~~~~~~~~p~~L-----------AGGl~---~~NV~----~~~~~~p~gvDvs------SgvE~~~G~KD~~ki~~fi~ 194 (203) T 1v5x_A 139 AKPLLATGRRVIL-----------AGGIA---PENLE----EVLALRPYALDLA------SGVEEAPGVKSAEKLRALFA 194 (203) T ss_dssp GHHHHHTTSCEEE-----------CSSCC---STTHH----HHHHHCCSEEEES------GGGEEETTEECHHHHHHHHH T ss_pred HHHHHHHHCCEEE-----------ECCCC---HHHHH----HHHHCCCCEEEEC------CCEECCCCCCCHHHHHHHHH T ss_conf 7645663187899-----------88889---79999----9996699889976------84177899649999999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780669|r 290 QLLAID 295 (301) Q Consensus 290 ~l~~i~ 295 (301) .++.++ T Consensus 195 ~v~~~~ 200 (203) T 1v5x_A 195 RLASLR 200 (203) T ss_dssp HHHHTC T ss_pred HHHHHH T ss_conf 998765 No 200 >1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferase, sugar transport, phosphorylation; NMR {Escherichia coli K12} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D Probab=29.99 E-value=17 Score=16.11 Aligned_cols=56 Identities=13% Similarity=0.270 Sum_probs=41.2 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEE Q ss_conf 998866528768852288999987650215788225762899999998505977998 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINV 163 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~i 163 (301) +++.-++.|+++.-+-....+++...+..|++-++--.....+-+++... ++||.+ T Consensus 23 m~~~a~~~~~~~~i~A~~~~~~~~~~~~~DviLL~PQv~~~~~~i~~~~~-~~pV~v 78 (106) T 1e2b_A 23 MRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLP-NKPVEV 78 (106) T ss_dssp HHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSS-SSCCCB T ss_pred HHHHHHHCCCCEEEEEEEHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC-CCCEEE T ss_conf 99999987998899994078887524799799986889988999998808-999898 No 201 >2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Probab=29.90 E-value=27 Score=14.85 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=80.2 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHHHHHHH-HCCEEEECHHHCCCH------------HHHHH---HH-HCCCEEEEE--C Q ss_conf 89998866528768852288999987650-215788225762899------------99999---85-059779983--6 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQCEAIAD-SVDILQIPALLCRQT------------DLLTA---AA-QTGRVINVK--K 165 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~e~~~~-~vDilQIgA~~~rqt------------dLl~a---~a-~t~kpV~iK--k 165 (301) .-|++.++.=..-++--++|.-.+..+.+ .+|.++++....-.. +++.. +. .++.|+++- - T Consensus 10 ~~f~~~~~~g~~l~~p~a~D~~sArl~e~aGf~ai~~s~~~~a~~lG~pD~~~~t~~e~~~~~~~i~~~~~~p~ivD~d~ 89 (255) T 2qiw_A 10 TKFASDHESGKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVES 89 (255) T ss_dssp HHHHHHHHTCCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTT T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 99999864799189966868999999998599999977599999738999875676788999998870157756997465 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-----CCCHHHCCCCCCCHHHH-HHCC-CEEECHHHHHHHCCCCCCCC Q ss_conf 77789999999999997258780899514654-----44010000000106888-5187-16871177742122345321 Q gi|254780669|r 166 GQFLSPWEMHNILQKLHAHGAKDVLFCERGTS-----FGYNTLVTDMRSIPIMT-SMGV-PVIFDASHSVQQPGIHGNCS 238 (301) Q Consensus 166 gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~-----fgy~~lvvD~~~i~~lk-~~~~-PVi~D~SHs~q~p~~~~~~~ 238 (301) |+..++. ..++.+...|..-+.+-.-... ..+...+--.+..-... .... .+|.-=|-+.. .+.+... T Consensus 90 Gy~~~~~---~~v~~~~~aG~agi~iED~~~~~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~i~aRtda~~--~g~~~~~ 164 (255) T 2qiw_A 90 GYGLSPA---DLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVK--LGADVFE 164 (255) T ss_dssp CTTCCHH---HHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHH--HCTTTSS T ss_pred CCCCCHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHH--CCCCCCC T ss_conf 6553579---9999999999888777503376687555278888999999987643576438985543343--1567540 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHC--C---CCCC-----------CCCCHHHHHHH Q ss_conf 263889999999999718988999836983347--9---7820-----------18688999999 Q gi|254780669|r 239 GGERQYIVPLAKAAVAIGIAGIFLETHQDPDNA--P---SDGP-----------NMINIKDLPKL 287 (301) Q Consensus 239 gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~A--l---sD~~-----------q~l~l~~l~~l 287 (301) .|-.+. ..=+++-..+|+|++|+|.=++++.+ + .+.| ..+++++|.+| T Consensus 165 ~~~~ea-I~Ra~ay~~AGAd~i~ie~~~s~e~~~~i~~~v~~Pv~~~~~~~~~~~~~~~~~l~~l 228 (255) T 2qiw_A 165 DPMVEA-IKRIKLMEQAGARSVYPVGLSTAEQVERLVDAVSVPVNITAHPVDGHGAGDLATLAGL 228 (255) T ss_dssp SHHHHH-HHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTCSSCBEEECBTTTBBTTBCHHHHHHT T ss_pred HHHHHH-HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHC T ss_conf 119999-9999999982997899837899999999998649986899834788999989999975 No 202 >3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile 630} Probab=29.85 E-value=27 Score=14.85 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=131.2 Q ss_pred CCCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-CCHH Q ss_conf 177068357877279769970699954863499999999999999965533997066015576886663222456-7124 Q gi|254780669|r 24 TNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGV-GLKK 102 (301) Q Consensus 24 ~~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~-Gle~ 102 (301) +.+.+++ .++.||++.|. |.-|..-++.+.+++-|+.+...+.++. =|.- +.|... ..++ T Consensus 4 ~~~~~~v----~~~~~g~~~p~--Icv~i~~~t~~e~l~~~~~~~~~~aD~v---ElRl----------D~l~~~~~~~~ 64 (258) T 3js3_A 4 MKRKVQV----KNITIGEGRPK--ICVPIIGKNKKDIIKEAKELKDACLDII---EWRV----------DFFENVENIKE 64 (258) T ss_dssp CCCCEEE----TTEEETSSSCE--EEEEECCSSHHHHHHHHHHHTTSSCSEE---EEEG----------GGCTTTTCHHH T ss_pred CCCCEEE----CCEEECCCCCE--EEEEECCCCHHHHHHHHHHHHHCCCCEE---EEEE----------ECCCCCCCHHH T ss_conf 6672698----17582799987--9999678998999999998734599989---9986----------03667688999 Q ss_pred HHHHHHHHHHHH-CCEEEEECCCHH-----------HHHH---HH--HHCCEEEECHHHCCC--HHHHHHHHHCCCEEEE Q ss_conf 888999886652-876885228899-----------9987---65--021578822576289--9999998505977998 Q gi|254780669|r 103 GREIFRDLKKKY-GFPILTDVHTEQ-----------QCEA---IA--DSVDILQIPALLCRQ--TDLLTAAAQTGRVINV 163 (301) Q Consensus 103 gL~il~e~k~~~-glpv~TeV~~~~-----------~~e~---~~--~~vDilQIgA~~~rq--tdLl~a~a~t~kpV~i 163 (301) -.+++.++++.+ ++|++--+.... .++. +. ..+|.+-|-.++-.+ .+|++.+.+.+..|.+ T Consensus 65 i~~~l~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~l~~~a~~~~~~vI~ 144 (258) T 3js3_A 65 VKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVII 144 (258) T ss_dssp HHHHHHHHHHHHTTSCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999973589978999656102898889999999999999980894146888755199999999886616976999 Q ss_pred ECCCC---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH--HCCCEEECHHHHHHHCCCCCCCC Q ss_conf 36777---89999999999997258780899514654440100000001068885--18716871177742122345321 Q gi|254780669|r 164 KKGQF---LSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS--MGVPVIFDASHSVQQPGIHGNCS 238 (301) Q Consensus 164 Kkgq~---~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~--~~~PVi~D~SHs~q~p~~~~~~~ 238 (301) =.+-| .+.+++....+.+...|.+=+-+.=--. .+.+...-+.....+++ ...|+|.=+.=. T Consensus 145 S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~D~l~ll~~~~~~~~~~~~~p~I~~~MG~----------- 211 (258) T 3js3_A 145 SNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQ--NEKDVLVLLEATNEMFKIYADRPIITMSMSG----------- 211 (258) T ss_dssp EEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SHHHHHHHHHHHHHHHHTTCSSCBEEEECTG----------- T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC--CHHHHHHHHHHHHHHHHHCCCCCEEEEECCC----------- T ss_conf 994489998899999999999974898699998229--8899999999999998626899889996698----------- Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 263889999999999718988999836983347978201868899999999999 Q gi|254780669|r 239 GGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLL 292 (301) Q Consensus 239 gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~ 292 (301) .|+..=+ .+-.+|-.-.|.= -++| -+|-|++.+++..+++-+- T Consensus 212 ~G~~sRi-----~~~~~GS~~tfa~-~~~~-----sAPGQls~~~l~~~l~~l~ 254 (258) T 3js3_A 212 MGVISRL-----CGEIFGSALTFGA-AKSV-----SAPGQISFKELNSVLNLLH 254 (258) T ss_dssp GGTHHHH-----CHHHHCBCEEECB-SSSC-----SSTTCCBHHHHHHHHHHHH T ss_pred CCHHHHH-----HHHHHCCCEEECC-CCCC-----CCCCCCCHHHHHHHHHHHH T ss_conf 7759999-----8998689537346-8999-----9999877999999999999 No 203 >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma- family, lyase; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Probab=29.48 E-value=27 Score=14.81 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=92.5 Q ss_pred HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHH--HH-HH--H-HCCEEEECHH Q ss_conf 65533997066015576886663222456712488899988665287688522889999--87-65--0-2157882257 Q gi|254780669|r 70 ICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQC--EA-IA--D-SVDILQIPAL 143 (301) Q Consensus 70 ~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~--e~-~~--~-~vDilQIgA~ 143 (301) .|.++.++...-+--++--+||-+.|... ++..+++..- +.+ .+-+-..+|... |. ++ | ..+.+=-+.= T Consensus 64 ~G~~~~~~~~t~av~~PIy~sstf~f~~~--~~~~~~~~~~--~~~-~~YsR~gNPT~~~lE~~la~LEg~~~a~~fsSG 138 (445) T 1qgn_A 64 AGERLGRGIVTDAITTPVVNTSAYFFNKT--SELIDFKEKR--RAS-FEYGRYGNPTTVVLEEKISALEGAESTLLMASG 138 (445) T ss_dssp TTTTTCCSSCCSBSSCCBCCCSBBCBSSH--HHHHHHHTTS--SCC-CCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCH T ss_pred CCCCCCCCCCCCCEECCCCCCCCEEECCH--HHHHHHHCCC--CCC-CEECCCCCHHHHHHHHHHHHHHCCCEEEEECCH T ss_conf 89878999999984388016762671898--9999874387--689-345599887899999999998499738994489 Q ss_pred HCCCHHHHHHHHHCCCEEEEECCCCCCHHHH-------------------HHHHHHHHHCCCCCEEEEECCCCCCCHHHC Q ss_conf 6289999999850597799836777899999-------------------999999972587808995146544401000 Q gi|254780669|r 144 LCRQTDLLTAAAQTGRVINVKKGQFLSPWEM-------------------HNILQKLHAHGAKDVLFCERGTSFGYNTLV 204 (301) Q Consensus 144 ~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~-------------------~~a~eki~~~Gn~~i~lcERG~~fgy~~lv 204 (301) .+-.+-.+.++.+.|..|..=+..+..-..+ ....+......|..+++||-=+..... + T Consensus 139 MAAi~~~l~al~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~~~~~~~~~~~~~~t~lv~~EspsNP~l~--v 216 (445) T 1qgn_A 139 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLR--C 216 (445) T ss_dssp HHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCTTTCC--C T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC--C T ss_conf 99999999963789998998578877613402321124670344137751188998531466479978888897764--5 Q ss_pred CCCCCCHHH-HHHCCCEEECHHHHH---HHCC----------------C----CCCCCCCCHHHHHHHHHHHHHHCCCEE Q ss_conf 000010688-851871687117774---2122----------------3----453212638899999999997189889 Q gi|254780669|r 205 TDMRSIPIM-TSMGVPVIFDASHSV---QQPG----------------I----HGNCSGGERQYIVPLAKAAVAIGIAGI 260 (301) Q Consensus 205 vD~~~i~~l-k~~~~PVi~D~SHs~---q~p~----------------~----~~~~~gG~r~~v~~la~aa~a~G~dGl 260 (301) +|++.+..+ |+.+.++|+|-|-++ |+|- | .++...++++++..+.......|. T Consensus 217 ~Di~~ia~lA~~~g~~~vVDNT~atP~~~~Pl~~GADIVvhS~TKyi~Ghsdv~gG~v~~~~~~~~~~~~~~~~~G~--- 293 (445) T 1qgn_A 217 VDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGG--- 293 (445) T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCC--- T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCEECCEEECCHHHHHHHHCCCCCCCC--- T ss_conf 57699999998749979973685462557742316878998502104787641222342144565555312366677--- Q ss_pred EEEECCCHHHCC Q ss_conf 998369833479 Q gi|254780669|r 261 FLETHQDPDNAP 272 (301) Q Consensus 261 fiE~Hp~P~~Al 272 (301) +.+|..|+ T Consensus 294 ----~lsp~~a~ 301 (445) T 1qgn_A 294 ----ALNPNAAY 301 (445) T ss_dssp ----CCCHHHHH T ss_pred ----CCCHHHHH T ss_conf ----07889999 No 204 >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Probab=29.00 E-value=17 Score=16.22 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=63.3 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHH-HHHHHC-----CEEEECHHHCCCHHHHHHHHHCC-CEEEE--EC-CCCCCHHHHH Q ss_conf 999886652876885228899998-765021-----57882257628999999985059-77998--36-7778999999 Q gi|254780669|r 106 IFRDLKKKYGFPILTDVHTEQQCE-AIADSV-----DILQIPALLCRQTDLLTAAAQTG-RVINV--KK-GQFLSPWEMH 175 (301) Q Consensus 106 il~e~k~~~glpv~TeV~~~~~~e-~~~~~v-----DilQIgA~~~rqtdLl~a~a~t~-kpV~i--Kk-gq~~s~~e~~ 175 (301) .=+++++.+|.+-.-=+..-..+- .+.... |-+=+|++.|.-| +.++...| +||.+ .. -..+++++.. T Consensus 44 fE~~~a~~~g~~~av~~~Sgt~Al~~al~al~~~~gdeVi~p~~t~~a~--~~ai~~~g~~pv~~Di~~~~~~~d~~~l~ 121 (393) T 1mdo_A 44 LEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVST--LNMIVLLGANPVMVDVDRDTLMVTPEHIE 121 (393) T ss_dssp HHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHH--HHHHHHTTCEEEEECBCTTTCCBCHHHHH T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCEEHHH--HHHHHCCCCEEEEECCCCCCCCCCHHHHH T ss_conf 9999999988295999678899999999981999989897179631311--32242379789970254322458899999 Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHHH Q ss_conf 99999972587808995146544401000000010688-8518716871177742 Q gi|254780669|r 176 NILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSVQ 229 (301) Q Consensus 176 ~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~q 229 (301) +......+-|++++ .||+ ..|+..+..+ |+.++|||-|+.||.- T Consensus 122 ----~~i~~~tkaii~~h---~~G~---~~d~~~i~~i~~~~~i~lIeD~a~a~g 166 (393) T 1mdo_A 122 ----AAITPQTKAIIPVH---YAGA---PADLDAIYALGERYGIPVIEDAAHATG 166 (393) T ss_dssp ----HHCCTTEEEECCBC---GGGC---CCCHHHHHHHHHHHTCCBCEECTTCTT T ss_pred ----HHHCCCCEEEEECC---CCCC---EECHHHHHHHHHHCCCEEEECCHHHHC T ss_conf ----74077834997137---6783---316899998887429579972803326 No 205 >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Probab=28.98 E-value=28 Score=14.75 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=6.0 Q ss_pred EEECCCCCCCHHH Q ss_conf 9954863499999 Q gi|254780669|r 47 LIAGPCQIESHDH 59 (301) Q Consensus 47 iIAGPCsiES~e~ 59 (301) ++.|+..+-=-.. T Consensus 20 ~liG~~~~GKTsl 32 (187) T 1zj6_A 20 IIVGLDNAGKTTI 32 (187) T ss_dssp EEEESTTSSHHHH T ss_pred EEECCCCCCHHHH T ss_conf 9999999887999 No 206 >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Probab=28.96 E-value=24 Score=15.21 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=85.3 Q ss_pred HHHHHHHHHHCCEEEEECCCHHHH-HHHH---HHCCEEEECHHHCCCHHHHHHHHHCC-CEEEEE---CCCCCCHHHHHH Q ss_conf 899988665287688522889999-8765---02157882257628999999985059-779983---677789999999 Q gi|254780669|r 105 EIFRDLKKKYGFPILTDVHTEQQC-EAIA---DSVDILQIPALLCRQTDLLTAAAQTG-RVINVK---KGQFLSPWEMHN 176 (301) Q Consensus 105 ~il~e~k~~~glpv~TeV~~~~~~-e~~~---~~vDilQIgA~~~rqtdLl~a~a~t~-kpV~iK---kgq~~s~~e~~~ 176 (301) +.=+++++.+|.+-.-=+..-..+ ..+. ..=|-+=+|++.|--+- .++-..| +||.+- ....+++++.. T Consensus 56 ~fE~~la~~~g~k~av~~sSGT~AL~lal~al~~~deVivp~~t~~at~--~ai~~~G~~pvfvDid~~t~~~d~~~~~- 132 (424) T 2po3_A 56 EFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATP--HALRWIGLTPVFADIDPDTGNLDPDQVA- 132 (424) T ss_dssp HHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHH--HHHHHTTCEEEEECBCTTTSSBCHHHHG- T ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCHHHH--HHHHHCCCEEEEEEEECCCCCCCHHHHH- T ss_conf 9999999997829599966779999999997699698998797418459--9999779989998741443568899998- Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHHHH------CC----------------- Q ss_conf 9999972587808995146544401000000010688-85187168711777421------22----------------- Q gi|254780669|r 177 ILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSVQQ------PG----------------- 232 (301) Q Consensus 177 a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~q~------p~----------------- 232 (301) +....--.-|++.+ .||+ ..|+..+..+ |+.+++||.|++||.-- .| T Consensus 133 ---~~it~~t~aii~vh---~~G~---~~d~~~i~~iak~~~l~vIEDaA~a~Ga~~~g~~~Gs~Gd~~~fSF~~~K~it 203 (424) T 2po3_A 133 ---AAVTPRTSAVVGVH---LWGR---PCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKAVN 203 (424) T ss_dssp ---GGCCTTEEEEEEEC---GGGC---CCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC T ss_pred ---HHHCCCCEEEEEEC---CCCC---CCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCCEEECCCCCEEEECCCCCCCCC T ss_conf ---65135752899854---7787---55588999999982985984004431753299884457653322363124466 Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf -3453212638899999999997189889998369833479782018688999999999 Q gi|254780669|r 233 -IHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQ 290 (301) Q Consensus 233 -~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~ 290 (301) +.||..--+.+-....++.-...|.|.-..-....-.--+||-..++-+.+|+.+=+. T Consensus 204 ~geGG~i~t~d~~~~~~~r~~r~~G~~~~~~~~~~g~n~rmsel~Aaigl~qL~~l~~~ 262 (424) T 2po3_A 204 AFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEV 262 (424) T ss_dssp CSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHH T ss_pred CCCCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 37999243279999999999874585645554446742212288999999986222999 No 207 >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii OT3} Probab=28.78 E-value=28 Score=14.73 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=44.7 Q ss_pred CCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH- Q ss_conf 1578822576289999999850597799836777899999999999972587808995146544401000000010688- Q gi|254780669|r 135 VDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM- 213 (301) Q Consensus 135 vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l- 213 (301) +.++--|.|-.+-.+.+...+..-..+-...+...++.+...+.. ....-+-|.+++-.++.|.- .|+..|..+ T Consensus 98 vlv~~~g~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~h~~t~tG~~---~~i~~I~~~~ 172 (386) T 2dr1_A 98 VLVTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALR--KNPDVEAVTITYNETSTGVL---NPLPELAKVA 172 (386) T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH--HCTTCCEEEEESEETTTTEE---CCHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH--CCCCCEEEEEECCCCCCCCC---CCHHHHHHHH T ss_conf 899726713799999999829863464138887667788998862--38990699998666876767---7768899999 Q ss_pred HHHCCCEEECHHHHH Q ss_conf 851871687117774 Q gi|254780669|r 214 TSMGVPVIFDASHSV 228 (301) Q Consensus 214 k~~~~PVi~D~SHs~ 228 (301) ++.+.++++|.+||+ T Consensus 173 ~~~g~~~~vDa~qs~ 187 (386) T 2dr1_A 173 KEHDKLVFVDAVSAM 187 (386) T ss_dssp HHTTCEEEEECTTTB T ss_pred HHCCCEEEEECCHHC T ss_conf 875985999761203 No 208 >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Probab=28.53 E-value=28 Score=14.70 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=77.3 Q ss_pred HHHHHHHHHHHHCCEEEEECCCHHHHHHHHH--HCCEEEECH----HHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHH Q ss_conf 8889998866528768852288999987650--215788225----7628999999985059779983677789999999 Q gi|254780669|r 103 GREIFRDLKKKYGFPILTDVHTEQQCEAIAD--SVDILQIPA----LLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHN 176 (301) Q Consensus 103 gL~il~e~k~~~glpv~TeV~~~~~~e~~~~--~vDilQIgA----~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~ 176 (301) -.-.|+++|.. +. =++-++-..++ .+|-|-+=- |.-|..|+..-....+.|.|+.-. .++ +|+. T Consensus 40 hVAtLRnaRg~-~~------Pd~~~aA~~~~~~GAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a--~~~-e~i~ 109 (278) T 3gk0_A 40 HVATLRNARGT-AY------PDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRVKTRMNLECA--VTP-EMLD 109 (278) T ss_dssp HHHHHHHHHSS-SC------SCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSCEEEEEC--SSH-HHHH T ss_pred CEEEECCCCCC-CC------CCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC--CCH-HHHH T ss_conf 15420105898-99------99999999999829986895268875657589999999873775577888--709-9999 Q ss_pred HHHHHHHCCCCCEEEE---------ECCCCCCCHHHCCCC-CCCHHHHHHCC--CEEECHHHHHHHCCCCCCCCCCCHHH Q ss_conf 9999972587808995---------146544401000000-01068885187--16871177742122345321263889 Q gi|254780669|r 177 ILQKLHAHGAKDVLFC---------ERGTSFGYNTLVTDM-RSIPIMTSMGV--PVIFDASHSVQQPGIHGNCSGGERQY 244 (301) Q Consensus 177 a~eki~~~Gn~~i~lc---------ERG~~fgy~~lvvD~-~~i~~lk~~~~--PVi~D~SHs~q~p~~~~~~~gG~r~~ 244 (301) .+.++.- +++-|. |.|--+..+.- .+ ..+..+|+.+. -+.+||.-. T Consensus 110 ia~~~kP---~qvtLVPE~r~elTTegGlDv~~~~~--~L~~~i~~Lk~~gIrVSLFIDPd~~----------------- 167 (278) T 3gk0_A 110 IACEIRP---HDACLVPEKRSELTTEGGLDVVGHFD--AVRAACKQLADAGVRVSLFIDPDEA----------------- 167 (278) T ss_dssp HHHHHCC---SEEEECCCSGGGBCSSSSBCTTTTHH--HHHHHHHHHHHTTCEEEEEECSCHH----------------- T ss_pred HHHHCCC---CEEEECCCCCCCCCCCCCEEEHHHHH--HHHHHHHHHHHCCCCEEEEECCCHH----------------- T ss_conf 9996699---87998888855545557662062599--9999999999749817998369878----------------- Q ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999999999718988999836983347978201868899999999999999988 Q gi|254780669|r 245 IVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKII 298 (301) Q Consensus 245 v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~~i~~~v 298 (301) ...+|...|+| .||-|.-|=-...+ -.+.+.-++++....+.. T Consensus 168 ---qi~~A~~~Gad--~IELhTG~YA~a~~------~~~~~~el~~i~~aa~~A 210 (278) T 3gk0_A 168 ---QIRAAHETGAP--VIELHTGRYADAHD------AAEQQREFERIATGVDAG 210 (278) T ss_dssp ---HHHHHHHHTCS--EEEECCHHHHTCSS------HHHHHHHHHHHHHHHHHH T ss_pred ---HHHHHHHCCCC--EEEEECHHHHCCCC------CCCCHHHHHHHHHHHHHH T ss_conf ---99998505999--79972335533254------320079999999999999 No 209 >1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* Probab=28.18 E-value=29 Score=14.66 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=48.6 Q ss_pred CCEEEEECCCCCC-----------CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 7069995486349-----------99999999999999655339970660155768866632224567124888999886 Q gi|254780669|r 43 QRFVLIAGPCQIE-----------SHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLK 111 (301) Q Consensus 43 ~~l~iIAGPCsiE-----------S~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k 111 (301) .|+||.-|+..-| |.+.+.+.++.+.+.|.+...=+-.=++-.|.. +.-.+|..-|+ -...++.+| T Consensus 40 ~PiFV~Eg~~~kepI~SMPGv~R~Sid~L~~eie~~~~lGI~aV~LFgvi~~~~Kd~-~gs~A~n~~~l--v~raIr~iK 116 (337) T 1w5q_A 40 LPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSL-DAAEAYNPEGI--AQRATRALR 116 (337) T ss_dssp EEEEEESSSSCEEECTTSTTCEEEEHHHHHHHHHHHHHTTCCEEEEEECCCGGGCBS-SCGGGGCTTSH--HHHHHHHHH T ss_pred EEEEEEECCCCCEECCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCHHCCCCCCH--HHHHHHHHH T ss_conf 205994089983356899984366899999999999987997899804114666788-85010696328--999999999 Q ss_pred HHH-CCEEEEECCCHH Q ss_conf 652-876885228899 Q gi|254780669|r 112 KKY-GFPILTDVHTEQ 126 (301) Q Consensus 112 ~~~-glpv~TeV~~~~ 126 (301) ++| ++-|+|||.-.. T Consensus 117 ~~fp~l~vi~DVcLc~ 132 (337) T 1w5q_A 117 ERFPELGIITDVCLCE 132 (337) T ss_dssp HHCTTSEEEEEECSTT T ss_pred HHHCCEEEEEEECCCC T ss_conf 8606469997520356 No 210 >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Probab=27.95 E-value=29 Score=14.64 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=38.5 Q ss_pred HHHHHHHHC---CCEEEEECCC-------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH------HCCCCCCCHH Q ss_conf 999998505---9779983677-------78999999999999725878089951465444010------0000001068 Q gi|254780669|r 149 DLLTAAAQT---GRVINVKKGQ-------FLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNT------LVTDMRSIPI 212 (301) Q Consensus 149 dLl~a~a~t---~kpV~iKkgq-------~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~------lvvD~~~i~~ 212 (301) ++++++-+. +.||.++=+. ..+++|.+..+.++...|.+ .+-+-.|..+...+ ...++ ... T Consensus 213 Eii~air~~~g~~~~i~~R~~~~~~~~~~g~~~~e~~~~~~~l~~~gvD-~i~vs~G~~~~~~~~~~~~~~~~~~--a~~ 289 (363) T 3l5l_A 213 ETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLD-LLSVSVGFTIPDTNIPWGPAFMGPI--AER 289 (363) T ss_dssp HHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEECCCSSCCCCCCCTTTTHHH--HHH T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCCCHHHH--HHH T ss_conf 9999999862667740210573235788986488999999999861876-7998547322676666674200579--999 Q ss_pred HHH-HCCCEEE Q ss_conf 885-1871687 Q gi|254780669|r 213 MTS-MGVPVIF 222 (301) Q Consensus 213 lk~-~~~PVi~ 222 (301) +|+ ...|||. T Consensus 290 ik~~~~~pvi~ 300 (363) T 3l5l_A 290 VRREAKLPVTS 300 (363) T ss_dssp HHHHHTCCEEE T ss_pred HHHHCCCEEEE T ss_conf 99865930899 No 211 >3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} Probab=27.85 E-value=29 Score=14.62 Aligned_cols=21 Identities=5% Similarity=-0.027 Sum_probs=13.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHH Q ss_conf 349999999999999996553 Q gi|254780669|r 53 QIESHDHAFMIAEKLYAICQS 73 (301) Q Consensus 53 siES~e~~~~~A~~lk~~~~~ 73 (301) -++...-+=.+++.++..|.+ T Consensus 14 ~p~~p~NiGai~Rs~~~fG~~ 34 (244) T 3ilk_A 14 ETSHSGNIGSAARAMKTMGLT 34 (244) T ss_dssp SCCSHHHHHHHHHHHHHHTCC T ss_pred CCCCCCHHHHHHHHHHHHCCC T ss_conf 898867699999999980999 No 212 >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima} Probab=27.83 E-value=29 Score=14.62 Aligned_cols=166 Identities=18% Similarity=0.244 Sum_probs=96.8 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE--CCCHHHHHHHHH-HCC Q ss_conf 99999999996553399706601557688666322245671248889998866528768852--288999987650-215 Q gi|254780669|r 60 AFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTD--VHTEQQCEAIAD-SVD 136 (301) Q Consensus 60 ~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~Te--V~~~~~~e~~~~-~vD 136 (301) ..+.|+.+.+.|++ -++=-..|.+ ...+ | .-+++++++.++..+|+.-- |.+.++++.+.. .+| T Consensus 32 ~~d~~~~~~~~gad----ei~i~did~~-----~~~~--g--~n~~lI~~I~~~~~iPl~vGGGIr~~ed~~~ll~~Gad 98 (266) T 2w6r_A 32 LRDWVVEVEKRGAG----EILLTSIDRD-----GTKS--G--YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGAD 98 (266) T ss_dssp HHHHHHHHHHHTCS----EEEEEETTTS-----SCSS--C--CCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCS T ss_pred HHHHHHHHHHCCCC----EEEEEEEECC-----CCCC--C--CCHHHHHHHHHEECCEEEECCCCCCCCCHHHHHHHHHH T ss_conf 79999999987999----8999996087-----5578--8--66777643453248549976772120210033322000 Q ss_pred EEEECHHHCCC----HHHHHHHHHCC----CE---EEEEC--C---------C---CCCHHHHHHHHHHHHHCCCCCEEE Q ss_conf 78822576289----99999985059----77---99836--7---------7---789999999999997258780899 Q gi|254780669|r 137 ILQIPALLCRQ----TDLLTAAAQTG----RV---INVKK--G---------Q---FLSPWEMHNILQKLHAHGAKDVLF 191 (301) Q Consensus 137 ilQIgA~~~rq----tdLl~a~a~t~----kp---V~iKk--g---------q---~~s~~e~~~a~eki~~~Gn~~i~l 191 (301) -+=|+.-.-.+ .++.+++++.+ +. +-+|+ | + ..++.+| ++++...|...+++ T Consensus 99 kVii~s~~~~~~~~~~~i~~~~~~~gg~~q~IvvsiD~k~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~g~geil~ 175 (266) T 2w6r_A 99 KALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDW---VVEVEKRGAGEILL 175 (266) T ss_dssp EEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHH---HHHHHHTTCSEEEE T ss_pred HEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCCCHHH---HHHHHCCCCCEEEE T ss_conf 001133224551122667899998589864999998767527955899767850168720233---54331558585899 Q ss_pred EEC---CCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 514---654440100000001068885-187168711777421223453212638899999999997189889998 Q gi|254780669|r 192 CER---GTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE 263 (301) Q Consensus 192 cER---G~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE 263 (301) +.= |+..|++ +..+..+++ ...|+|+ +||-+.+-. +.. +...|++|..+= T Consensus 176 t~V~~DGt~~G~d-----~~l~~~i~~~~~~piI~---------------sGGi~s~~d-i~~-l~~~g~~gvi~g 229 (266) T 2w6r_A 176 TSIDRDGTKSGYD-----TEMIRFVRPLTTLPIIA---------------SGGAGKMEH-FLE-AFLAGADAALAA 229 (266) T ss_dssp EETTTTTTCSCCC-----HHHHHHHGGGCCSCEEE---------------ESCCCSHHH-HHH-HHHHTCSEEEES T ss_pred EEECCCCCCCCCC-----HHHHHHHHHCCCCCEEE---------------EECCCCHHH-HHH-HHHCCCCEEEEE T ss_conf 8887879868876-----79999998618977899---------------947999999-999-997899799980 No 213 >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Probab=27.78 E-value=29 Score=14.62 Aligned_cols=99 Identities=11% Similarity=-0.009 Sum_probs=50.8 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCH Q ss_conf 99954863499999999999999965533997066015576886663222456712488899988665287688522889 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTE 125 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~ 125 (301) .+|+| ++-.|-+.+.+.|+..++.|.+.. .+.=|.|.+ + ..+.-++-.+.++++.+..++|++- T Consensus 79 ~vi~g-v~~~s~~~~i~~a~~a~~~G~d~~--lv~pP~y~~--~------~~~~~~~i~~~~~~ia~~~~lpiii----- 142 (309) T 3fkr_A 79 PVIVT-TSHYSTQVCAARSLRAQQLGAAMV--MAMPPYHGA--T------FRVPEAQIFEFYARVSDAIAIPIMV----- 142 (309) T ss_dssp CEEEE-CCCSSHHHHHHHHHHHHHTTCSEE--EECCSCBTT--T------BCCCHHHHHHHHHHHHHHCSSCEEE----- T ss_pred EEEEE-CCCCCHHHHHHHHHHHHHCCCCEE--EECCCCCCC--C------CCCCHHHHHHHHHHHHHHCCCCEEE----- T ss_conf 08996-787868999999999743499878--854874456--7------7889999999999997224887698----- Q ss_pred HHHHHHHHHCCEEEECHHHCCC--HHHHHHHHHCCCEEEEECCCCCCHH Q ss_conf 9998765021578822576289--9999998505977998367778999 Q gi|254780669|r 126 QQCEAIADSVDILQIPALLCRQ--TDLLTAAAQTGRVINVKKGQFLSPW 172 (301) Q Consensus 126 ~~~e~~~~~vDilQIgA~~~rq--tdLl~a~a~t~kpV~iKkgq~~s~~ 172 (301) .+.|+....- -++++.+++....+-+|+.-.-+.+ T Consensus 143 ------------Yn~P~~~~~~~~~~l~~~l~~~pnv~gik~~~~~~~~ 179 (309) T 3fkr_A 143 ------------QDAPASGTALSAPFLARMAREIEQVAYFXIETPGAAN 179 (309) T ss_dssp ------------EECGGGCCCCCHHHHHHHHHHSTTEEEEEECSSSHHH T ss_pred ------------ECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHH T ss_conf ------------5167655777889999998506775899825788499 No 214 >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Probab=27.69 E-value=29 Score=14.61 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=62.6 Q ss_pred HHCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH--HHCCCCCCCHHHHHH-----CCCEEECHH Q ss_conf 5059779983--6777899999999999972587808995146544401--000000010688851-----871687117 Q gi|254780669|r 155 AQTGRVINVK--KGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYN--TLVTDMRSIPIMTSM-----GVPVIFDAS 225 (301) Q Consensus 155 a~t~kpV~iK--kgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~--~lvvD~~~i~~lk~~-----~~PVi~D~S 225 (301) ...+..+.+- .....+++.+...++++.+.|.+.|.+|.- +|.- +.+ ..-+..+++. ..|+=+ =. T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~i~l~DT---~G~~~P~~v--~~~i~~~~~~l~~~~~i~l~~-H~ 204 (293) T 3ewb_X 131 RQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDT---VGYTNPTEF--GQLFQDLRREIKQFDDIIFAS-HC 204 (293) T ss_dssp HTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECS---SSCCCHHHH--HHHHHHHHHHCTTGGGSEEEE-EC T ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC---CCCCCCHHH--HHHHHHHHHHHCCCCCCEEEE-CC T ss_conf 507767998113366763456899999999869979983352---233583789--999999999723202705776-16 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 7742122345321263889999999999718988999836983347978201868899999999 Q gi|254780669|r 226 HSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLS 289 (301) Q Consensus 226 Hs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~ 289 (301) | -++-+...-+.+|+.+|++-+ ++=-. .+.-++-..+.+.+-..|. T Consensus 205 H-------------n~~GlA~aN~laA~~~Gv~~i--D~si~---GlG~~aGN~~tE~lv~~L~ 250 (293) T 3ewb_X 205 H-------------DDLGMATANALAAIENGARRV--EGTIN---GIGERAGNTALEEVAVALH 250 (293) T ss_dssp B-------------CTTSCHHHHHHHHHHTTCCEE--EEBGG---GCCTTTCBCBHHHHHHHHH T ss_pred C-------------CCHHHHHHHHHHHHHHCCCEE--EEECC---CCCCCCCCCCHHHHHHHHH T ss_conf 8-------------844369999999998398889--55124---4465446830999999999 No 215 >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Probab=27.58 E-value=29 Score=14.59 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=72.3 Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCHHHHH-HHHHHC-----CEEEECHHHCCCHHHHHHHHHCC-CEEEE---ECCCCCC Q ss_conf 24888999886652876885228899998-765021-----57882257628999999985059-77998---3677789 Q gi|254780669|r 101 KKGREIFRDLKKKYGFPILTDVHTEQQCE-AIADSV-----DILQIPALLCRQTDLLTAAAQTG-RVINV---KKGQFLS 170 (301) Q Consensus 101 e~gL~il~e~k~~~glpv~TeV~~~~~~e-~~~~~v-----DilQIgA~~~rqtdLl~a~a~t~-kpV~i---Kkgq~~s 170 (301) .+-.+.=+++++.+|.+-+.=+..-..+- .+.... |-+-+|++.|--| +.++...| +||.+ .....++ T Consensus 63 ~~v~~fE~~~a~~~g~k~~v~~~SGT~AL~lal~al~i~~gdeVi~p~~t~~at--~~ai~~~G~~pvf~Dv~~~~~~id 140 (399) T 2oga_A 63 PELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIAS--WLAVSATGATPVPVEPHEDHPTLD 140 (399) T ss_dssp HHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBCSSSSSBC T ss_pred HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHH--HHHHHHHCCCEEEEECCCCCCCCC T ss_conf 779999999999978496999658899999999985999949999799340735--779986148718962333113588 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHH Q ss_conf 9999999999972587808995146544401000000010688-851871687117774 Q gi|254780669|r 171 PWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSV 228 (301) Q Consensus 171 ~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~ 228 (301) +++....+ ...-+-|++.+ .||+ ..|+..+..+ |+.++|||-|+.||. T Consensus 141 ~~~l~~~i----~~~tkaIi~vh---~~G~---~~d~~~i~~i~k~~~i~vIEDaAqa~ 189 (399) T 2oga_A 141 PLLVEKAI----TPRTRALLPVH---LYGH---PADMDALRELADRHGLHIVEDAAQAH 189 (399) T ss_dssp HHHHHHHC----CTTEEEECCBC---GGGC---CCCHHHHHHHHHHHTCEECEECTTCT T ss_pred HHHHHHHH----CCCCEEEEEEC---CCCC---CCCHHHHHHHHHHCCCEEEEECCCHH T ss_conf 89999872----76650898527---8898---00369999999973986999773121 No 216 >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 Probab=27.35 E-value=30 Score=14.57 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=14.1 Q ss_pred CCCHHHHHHHHHHHHHH--CCEEEEECCC Q ss_conf 67124888999886652--8768852288 Q gi|254780669|r 98 VGLKKGREIFRDLKKKY--GFPILTDVHT 124 (301) Q Consensus 98 ~Gle~gL~il~e~k~~~--glpv~TeV~~ 124 (301) +..+|-.++++.+.+.. .+|++.-+-. T Consensus 61 Ls~eEr~~li~~~~~~~~~~~~vi~g~~~ 89 (303) T 2wkj_A 61 QSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303) T ss_dssp SCHHHHHHHHHHHHHHHTTTSEEEEECCC T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEECCC T ss_conf 89999999999999971799878997477 No 217 >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 2abb_A* 1vys_X* 1vyp_X* Probab=26.96 E-value=30 Score=14.52 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=44.9 Q ss_pred HHHHHHHH-CCC-EEEEECCC----------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH- Q ss_conf 99999850-597-79983677----------789999999999997258780899514654440100000001068885- Q gi|254780669|r 149 DLLTAAAQ-TGR-VINVKKGQ----------FLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS- 215 (301) Q Consensus 149 dLl~a~a~-t~k-pV~iKkgq----------~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~- 215 (301) ++++++-+ .+. .|.++... ..+.+|++..++.+...|..-+-+. .|...+.......+ ....|+ T Consensus 216 Eii~aIR~~~g~d~i~~~~~~~~~~~~~~~g~~~~~e~~~~~~~l~~~g~d~~~~s-~~~~~~~~~~~~~~--~~~i~~~ 292 (364) T 1vyr_A 216 EVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMS-ETDLAGGKPYSEAF--RQKVRER 292 (364) T ss_dssp HHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEE-CCBTTBCCCCCHHH--HHHHHHH T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC-CCCCCCCCCCHHHH--HHHHHHH T ss_conf 99999998708665577885032324432367507999999999986598499941-47777787630999--9999997 Q ss_pred HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEEEE Q ss_conf 18716871177742122345321263889999999999718-9889998 Q gi|254780669|r 216 MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIG-IAGIFLE 263 (301) Q Consensus 216 ~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G-~dGlfiE 263 (301) ...||+.- |... +..|-.+++-| +|.+.+- T Consensus 293 ~~~~vi~~----------------g~~t--~~~ae~~l~~G~aDlV~~g 323 (364) T 1vyr_A 293 FHGVIIGA----------------GAYT--AEKAEDLIGKGLIDAVAFG 323 (364) T ss_dssp CCSEEEEE----------------SSCC--HHHHHHHHHTTSCSEEEES T ss_pred CCCEEEEC----------------CCCC--HHHHHHHHHCCCCCEEHHH T ss_conf 38619966----------------8999--9999999987997456553 No 218 >2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae} Probab=26.79 E-value=30 Score=14.50 Aligned_cols=205 Identities=15% Similarity=0.236 Sum_probs=110.5 Q ss_pred CCHHHHHHHHHHHHHHH-----HH-CCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CEEEEECC Q ss_conf 99999999999999965-----53-399706601557688666322245671248889998866528-----76885228 Q gi|254780669|r 55 ESHDHAFMIAEKLYAIC-----QS-LNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYG-----FPILTDVH 123 (301) Q Consensus 55 ES~e~~~~~A~~lk~~~-----~~-~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~g-----lpv~TeV~ 123 (301) .+.+..++-|..+.+-+ ++ +.+|+- ++-+-|.+-|+ ..+ ++--+.+++.+++.+. +++--|-. T Consensus 246 ~~~~~a~~~a~~~i~eg~~~~GAdIIDIGge--STRPga~~Vs~--eeE--~~Rv~Pvi~~i~~~~~~~~~~v~iSIDT~ 319 (545) T 2bmb_A 246 ADIESQLNDIIKLCKDALYLHESVIIDVGGC--STRPNSIQASE--EEE--IRRSIPLIKAIRESTELPQDKVILSIDTY 319 (545) T ss_dssp TCHHHHHHHHHHHHHHHHTTCSCEEEEEECS--CCSTTCCCCCH--HHH--HHHHHHHHHHHHHCSSSCGGGEEEEEECC T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEEECCE--ECCCCCCCCCH--HHH--HHHHHHHHHHHHHHHCCCCCCCEEEEECC T ss_conf 7789999999999970323269948997966--08997982899--999--99899999999975003567844888688 Q ss_pred CHHHHHHHHH-HCCEEE-ECHHHCCCHHHHHHHHHC-CCEEEEE--CCC--CC--------------------------- Q ss_conf 8999987650-215788-225762899999998505-9779983--677--78--------------------------- Q gi|254780669|r 124 TEQQCEAIAD-SVDILQ-IPALLCRQTDLLTAAAQT-GRVINVK--KGQ--FL--------------------------- 169 (301) Q Consensus 124 ~~~~~e~~~~-~vDilQ-IgA~~~rqtdLl~a~a~t-~kpV~iK--kgq--~~--------------------------- 169 (301) .++-++.+.+ .+||+- |-++.. .-.++..+++. ..++.+- +|- .| T Consensus 320 ~~~Va~~Al~~Ga~iINDVsgg~~-d~~~~~v~a~~~~~~~ilmH~~g~p~~m~~~~~y~~~~~~~~~~~~~~~~~~~~~ 398 (545) T 2bmb_A 320 RSNVAKEAIKVGVDIINDISGGLF-DSNMFAVIAENPEICYILSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQ 398 (545) T ss_dssp CHHHHHHHHHTTCCEEEETTTTSS-CTTHHHHHHTCTTSEEEEECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGG T ss_pred CHHHHHHHHHCCCCEEECCCCCCC-CCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHH T ss_conf 899999999759869971123555-5046666432342025420257985554456766542112100111013320232 Q ss_pred ------------CH-HHHHHHHHHHHHCCCC-CEEEEECCCCCCCHH--HCCCCCCCHHHHHH----------------C Q ss_conf ------------99-9999999999725878-089951465444010--00000010688851----------------8 Q gi|254780669|r 170 ------------SP-WEMHNILQKLHAHGAK-DVLFCERGTSFGYNT--LVTDMRSIPIMTSM----------------G 217 (301) Q Consensus 170 ------------s~-~e~~~a~eki~~~Gn~-~i~lcERG~~fgy~~--lvvD~~~i~~lk~~----------------~ 217 (301) .. .++...++++.+.|.+ +=|+..=|+-||-+. ..-=+++++.++++ + T Consensus 399 ~~~~~~~~~vv~~v~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~l~~lg~~~~~~~~~~~~~~~~ 478 (545) T 2bmb_A 399 LDDLKDKTVLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAKTWKQNLQIIRHIPILKNYSFTMNSNNSQVYVNLRN 478 (545) T ss_dssp STTHHHHCHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHTTEEEEEEETTEEEEEECTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEECCCCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 10122223689999999999999999869985678996898878987999999977699974475311221000124679 Q ss_pred CCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHH--HHHHCCCEEEEEECCCHH Q ss_conf 7168711777421223453212638899999999--997189889998369833 Q gi|254780669|r 218 VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKA--AVAIGIAGIFLETHQDPD 269 (301) Q Consensus 218 ~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~a--a~a~G~dGlfiE~Hp~P~ 269 (301) +||.+-+|.=-..-.-.+......|.+ .++|-+ |+..|++ ++-||.-.+ T Consensus 479 ~PvLvG~SRKsfig~l~~~~~~~~R~~-~T~a~~~~a~~~Ga~--IvRVHDV~e 529 (545) T 2bmb_A 479 MPVLLGPSRKKFIGHITKDVDAKQRDF-ATGAVVASCIGFGSD--MVRVHDVKN 529 (545) T ss_dssp CCBEECCTTCHHHHHHHTCCSGGGGHH-HHHHHHHHHHHTTCS--EEEESCHHH T ss_pred CEEEEEECCCHHHHHHHCCCCHHHHHH-HHHHHHHHHHHCCCC--EEEECCHHH T ss_conf 628999653189998728998688709-999999999987998--999389899 No 219 >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Probab=26.78 E-value=30 Score=14.50 Aligned_cols=87 Identities=20% Similarity=0.153 Sum_probs=48.9 Q ss_pred HCCEEEECHHHCCCHHHHHHHHHCCCEE---EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCC Q ss_conf 2157882257628999999985059779---9836777899999999999972587808995146544401000000010 Q gi|254780669|r 134 SVDILQIPALLCRQTDLLTAAAQTGRVI---NVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSI 210 (301) Q Consensus 134 ~vDilQIgA~~~rqtdLl~a~a~t~kpV---~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i 210 (301) .+.+...+.+--+- ...+.+.+..+ ...-+...+..+.. +......-+-|.+++=-++.|.- .|+..| T Consensus 96 ~v~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~v~~~~~~tG~~---~pi~~I 166 (393) T 2huf_A 96 VILIGHTGHWGDRS---ADMATRYGADVRVVKSKVGQSLSLDEIR---DALLIHKPSVLFLTQGDSSTGVL---QGLEGV 166 (393) T ss_dssp EEEEEESSHHHHHH---HHHHHHTTCEEEEEECCTTCCCCHHHHH---HHHHHHCCSEEEEESEETTTTEE---CCCTTH T ss_pred EEEEEECCHHHHHH---HHHHHHCCCEEEECCCCCCCCCCHHHHH---HHHHCCCCEEEEEECCCCCCCCC---CCHHHH T ss_conf 68996154588899---9999983990673245578866859999---98505896599998757887424---788999 Q ss_pred HH-HHHHCCCEEECHHHHHH Q ss_conf 68-88518716871177742 Q gi|254780669|r 211 PI-MTSMGVPVIFDASHSVQ 229 (301) Q Consensus 211 ~~-lk~~~~PVi~D~SHs~q 229 (301) -. .++.+.++++|.+||.- T Consensus 167 ~~~~~~~g~l~~vDa~qa~g 186 (393) T 2huf_A 167 GALCHQHNCLLIVDTVASLG 186 (393) T ss_dssp HHHHHHTTCEEEEECTTTBT T ss_pred HHHHHHCCCEEEEECHHHCC T ss_conf 99999769859997513217 No 220 >2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1 Probab=26.73 E-value=22 Score=15.41 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=37.0 Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEE-ECHHHCCCHHHHHHH Q ss_conf 9706601557688666322245671248889998866528768852288999987650215788-225762899999998 Q gi|254780669|r 76 IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQ-IPALLCRQTDLLTAA 154 (301) Q Consensus 76 ~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQ-IgA~~~rqtdLl~a~ 154 (301) ++.-|.+.-+.|=+- .-+|.| +.++.|.+.+ ++.|+||+.+.--.+ .+...+++-| ||. +|.+++ T Consensus 6 VAL~Y~~~~~~aP~V---vAkG~g-~~A~~I~~~A-~~~gIPiv~~~~LAr---~L~~~~~~g~~IP~------ely~aV 71 (93) T 2vt1_B 6 IGIYFNPEIAPAPFI---SLIETN-QCALAVRKYA-NEVGIPTVRDVKLAR---KLYKTHTKYSFVDF------EHLDEV 71 (93) T ss_dssp EEEECCTTTCSSCEE---EEEEEH-HHHHHHHHHH-HHTTCCEEECHHHHH---HHHHHCCSSEECCT------TTHHHH T ss_pred EEEEECCCCCCCCEE---EEECCC-HHHHHHHHHH-HHCCCCEEECHHHHH---HHHHCCCCCCCCCH------HHHHHH T ss_conf 999857899989999---985185-9999999999-985998884999999---99974889881789------999999 Q ss_pred HH Q ss_conf 50 Q gi|254780669|r 155 AQ 156 (301) Q Consensus 155 a~ 156 (301) |+ T Consensus 72 A~ 73 (93) T 2vt1_B 72 LR 73 (93) T ss_dssp HH T ss_pred HH T ss_conf 99 No 221 >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Probab=26.26 E-value=31 Score=14.44 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=66.1 Q ss_pred CCEEEECHHHCCC-HHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 1578822576289-99999985-059779983677789999999999997258780899514654440100000001068 Q gi|254780669|r 135 VDILQIPALLCRQ-TDLLTAAA-QTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPI 212 (301) Q Consensus 135 vDilQIgA~~~rq-tdLl~a~a-~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~ 212 (301) =|-+.++...--- +.|++..- +.|.-+ .--....++++..+. ..+..++.||-=+... -.+.|+..+.. T Consensus 171 Gd~VV~~~~lYg~T~~ll~~~~~~~Gi~v--~~vd~~d~e~~~~ai-----~~~TklVf~EspsNP~--l~v~DI~~ia~ 241 (464) T 1ibj_A 171 GEEIVAGDDVYGGSDRLLSQVVPRSGVVV--KRVNTTKLDEVAAAI-----GPQTKLVWLESPTNPR--QQISDIRKISE 241 (464) T ss_dssp TCEEEEESSCCHHHHHHHHHTSGGGTCEE--EEECTTSHHHHHHHC-----CSSEEEEEECSSCTTT--CCCCCHHHHHH T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCC--EECCCCCCHHHHHHH-----CCCCEEEEECCCCCCC--CCHHHHHHHHH T ss_conf 99899908978479999999997478652--333874203466651-----6672499924899974--41443799999 Q ss_pred H-HHHCCCEEECHHHHH---HHC----------------CCCCCCCCC-----CHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 8-851871687117774---212----------------234532126-----388999999999971898899983698 Q gi|254780669|r 213 M-TSMGVPVIFDASHSV---QQP----------------GIHGNCSGG-----ERQYIVPLAKAAVAIGIAGIFLETHQD 267 (301) Q Consensus 213 l-k~~~~PVi~D~SHs~---q~p----------------~~~~~~~gG-----~r~~v~~la~aa~a~G~dGlfiE~Hp~ 267 (301) + ++.+.|+|+|-|-++ |+| +|.++..|| ..++...+.......|. ++. T Consensus 242 iA~~~gi~lVVDNT~aTP~~~~PL~~GADIVvhS~TKyisGhsDv~gG~vv~~~~~l~~~l~~~~~~~G~-------~ls 314 (464) T 1ibj_A 242 MAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS-------GLA 314 (464) T ss_dssp HHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTC-------BCC T ss_pred HHHHCCCEEEEECCCCCCCEECCCCCCCCEEEEECCEEECCCCCCCCCEEECCHHHHHHHHHHHHCCCCC-------CCC T ss_conf 9876398699989854653504555588889973550133774555762124769999999987415788-------558 Q ss_pred HHHC Q ss_conf 3347 Q gi|254780669|r 268 PDNA 271 (301) Q Consensus 268 P~~A 271 (301) |..| T Consensus 315 p~da 318 (464) T 1ibj_A 315 PFDC 318 (464) T ss_dssp HHHH T ss_pred HHHH T ss_conf 7789 No 222 >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate- loop, pyridoxal phosphate, selenocysteine synthase (SECS; HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Probab=26.21 E-value=31 Score=14.44 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=56.0 Q ss_pred CHHHHHHHHHCC-CEEEEEC---C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCC Q ss_conf 999999985059-7799836---7--77899999999999972587808995146544401000000010688-851871 Q gi|254780669|r 147 QTDLLTAAAQTG-RVINVKK---G--QFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVP 219 (301) Q Consensus 147 qtdLl~a~a~t~-kpV~iKk---g--q~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~P 219 (301) +....+++.-.| +|+.+.. + ..++++++..+++..... +.-++++.=++ |.+.. +-|+..|..+ ++++.+ T Consensus 154 H~s~~k~~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~-~~~~v~~~~~~-~~~g~-~~~~~~i~~~~~~~~~~ 230 (450) T 3bc8_A 154 QKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE-HILCLHSTTAC-FAPRV-PDRLEELAVICANYDIP 230 (450) T ss_dssp CHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG-GEEEEEEESSC-CTTBC-CCCHHHHHHHHHHHTCC T ss_pred CHHHHHHHHHCCCEEEEEEEECCHHCCCCCHHHHHHHHHHHCCC-CEEEEEEECCC-CCCCE-ECCHHHHHHHHHHHCCE T ss_conf 18899999983996799973034021483999999999874466-52799983787-78856-43599999999983994 Q ss_pred EEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 6871177742122345321263889999999999718988999836 Q gi|254780669|r 220 VIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETH 265 (301) Q Consensus 220 Vi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~H 265 (301) +++|.-|+. |-.-+......+.-..++|.+-.-.| T Consensus 231 l~vD~A~~~-----------~~~~~~~~~~~~~~~~~~d~~~~s~h 265 (450) T 3bc8_A 231 HVVNNAYGL-----------QSSKCMHLIQQGARVGRIDAFVQSLD 265 (450) T ss_dssp EEEECTTTT-----------TCHHHHHHHHHHHHHSCCCEEEEEHH T ss_pred EEEECCCHH-----------HCCCCCCCCCCCCCCCCCCEEEECCC T ss_conf 999664455-----------40023444532345677525995387 No 223 >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Probab=25.95 E-value=31 Score=14.40 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHCCEEEE--ECCCHHHHHHH-HH-HCCEEEECHHHCCCHHHHHHHH Q ss_conf 88999886652876885--22889999876-50-2157882257628999999985 Q gi|254780669|r 104 REIFRDLKKKYGFPILT--DVHTEQQCEAI-AD-SVDILQIPALLCRQTDLLTAAA 155 (301) Q Consensus 104 L~il~e~k~~~glpv~T--eV~~~~~~e~~-~~-~vDilQIgA~~~rqtdLl~a~a 155 (301) ....+.+|+.+++||+. -+++++.++.+ .+ .+|++-+|--+..+.||...+. T Consensus 283 ~~~~~~~~~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~v~~gR~~iadPd~~~k~~ 338 (690) T 3k30_A 283 EEFVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIR 338 (690) T ss_dssp HHHHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHCHHHHHCHHHHHHHH T ss_conf 89999986303687797589689999999998799765022569872948999998 No 224 >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} Probab=25.85 E-value=31 Score=14.39 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=40.4 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHH-HHHHHCCCEEEEECC Q ss_conf 998866528768852288999987650215788225762899999-998505977998367 Q gi|254780669|r 107 FRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLL-TAAAQTGRVINVKKG 166 (301) Q Consensus 107 l~e~k~~~glpv~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl-~a~a~t~kpV~iKkg 166 (301) +++.-++.|+++.-+-....+++...+..|++-++--....++=+ +.+++.+.||.+=.+ T Consensus 26 m~~~a~~~~~~~~v~A~~~~~~~~~~~~~DviLL~PQv~~~~~~i~~~~~~~~ipv~~I~~ 86 (108) T 3nbm_A 26 INEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG 86 (108) T ss_dssp HHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCH T ss_pred HHHHHHHCCCCEEEEEEEHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECH T ss_conf 9999997699789999538999988642899998667999999999998773992887287 No 225 >2pod_A Mandelate racemase / muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structure initiative, nysgrc; 2.34A {Burkholderia pseudomallei K96243} Probab=25.74 E-value=32 Score=14.38 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=29.5 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH-HCCCEEEC Q ss_conf 59779983677789999999999997258780899514654440100000001068885-18716871 Q gi|254780669|r 157 TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS-MGVPVIFD 223 (301) Q Consensus 157 t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~-~~~PVi~D 223 (301) .+..+++--.+..++++-+..+..+... ++...|-=.. +. |+..+..+++ +..|+..| T Consensus 213 ~~~~l~~D~n~~~~~~~A~~~~~~l~~~---~l~~~EeP~~--~~----d~~~~~~l~~~~~~pIa~g 271 (410) T 2pod_A 213 DKMDVMVEFHSLWNLPPALQIAEALREY---ETFWHEDPIR--MD----SLSSLKRYAERSLAPVCAS 271 (410) T ss_dssp GGCEEEEECTTCCCHHHHHHHHHHHGGG---TCSEEESCSC--SS----SGGGHHHHHHTCSSCEEEC T ss_pred CCCHHHHHHCCCCCHHHHHHHHHHHCCC---CCCCCCCCCC--CC----CHHHHHHHHHHCCCCCCCC T ss_conf 6503344312248989999999875112---3322468644--22----1899999997227986466 No 226 >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Probab=25.74 E-value=32 Score=14.38 Aligned_cols=123 Identities=9% Similarity=0.006 Sum_probs=49.6 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHH--CCEEEEECC Q ss_conf 5486349999999999999996553399706601557688666322---24567124888999886652--876885228 Q gi|254780669|r 49 AGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAG---KRGVGLKKGREIFRDLKKKY--GFPILTDVH 123 (301) Q Consensus 49 AGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~s---frG~Gle~gL~il~e~k~~~--glpv~TeV~ 123 (301) .|.-...|.|...+.|+.+.+.| .+.+=+|....-........ ......++-++.++.+++.+ ++.+.-|.+ T Consensus 142 ~~~~~~~s~e~~~~~a~~~~~~G---f~~~Kikvg~~~~~~~~~~~~~~~~~~d~~~di~~v~avr~~~G~~~~l~vDaN 218 (410) T 2qq6_A 142 GGLFEEGSNEEYIAVAREAVERG---FDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMH 218 (410) T ss_dssp CCTTCSTHHHHHHHHHHHHHHTT---CSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECT T ss_pred CCCCCCCCHHHHHHHHHHHHHCC---CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 04444589999999999999779---988997136767753333335677836589999999999997398542642666 Q ss_pred CHHHHHH-------HHHH-CCEEEECHHHCCCHHHHHHHHH-CCCEEEEECCCCCCHHHHHH Q ss_conf 8999987-------6502-1578822576289999999850-59779983677789999999 Q gi|254780669|r 124 TEQQCEA-------IADS-VDILQIPALLCRQTDLLTAAAQ-TGRVINVKKGQFLSPWEMHN 176 (301) Q Consensus 124 ~~~~~e~-------~~~~-vDilQIgA~~~rqtdLl~a~a~-t~kpV~iKkgq~~s~~e~~~ 176 (301) .....+. +.++ +..+.-|- ...+.+-+.++.+ +..||..=- ...+++++.. T Consensus 219 ~~~~~~~Ai~~~~~l~~~~i~~~EeP~-~~~d~~~~~~l~~~~~ipIa~gE-~~~~~~~~~~ 278 (410) T 2qq6_A 219 GRFDIPSSIRFARAMEPFGLLWLEEPT-PPENLDALAEVRRSTSTPICAGE-NVYTRFDFRE 278 (410) T ss_dssp TCCCHHHHHHHHHHHGGGCCSEEECCS-CTTCHHHHHHHHTTCSSCEEECT-TCCSHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCCCEEECCC-CCCCHHHHHHHHHCCCCCEECCC-CCCCHHHHHH T ss_conf 678989999999985100333575688-85378889999871467554685-4478889777 No 227 >3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B Probab=25.60 E-value=28 Score=14.67 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=26.0 Q ss_pred CCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE---ECCC Q ss_conf 7168711777421223453212638899999999997189889998---3698 Q gi|254780669|r 218 VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLE---THQD 267 (301) Q Consensus 218 ~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE---~Hp~ 267 (301) +|.-||.+.|...=---.-..+-..--+..++.|+-.+|.+-+.+| .||. T Consensus 7 yP~Y~Ds~~tr~eGRRV~k~~aV~~P~~~EI~~a~~~lgl~~~~iE~~K~yPr 59 (106) T 3dlu_A 7 WPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPR 59 (106) T ss_dssp CGGGGBTTSCGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEEEEEEEEEECC- T ss_pred ECCHHCCCCCHHHCCCCCHHHHCCCCCHHHHHHHHHHCCCCCEEECCCCCCCC T ss_conf 56232488874515735888966698999999999984997076055788985 No 228 >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Probab=25.42 E-value=32 Score=14.34 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=11.8 Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 89999999999997258780899514 Q gi|254780669|r 169 LSPWEMHNILQKLHAHGAKDVLFCER 194 (301) Q Consensus 169 ~s~~e~~~a~eki~~~Gn~~i~lcER 194 (301) +++++|+.-+++.++.|...||+=.| T Consensus 145 ~~~~~~i~~~~~~LeaGA~~ViiEar 170 (251) T 1qwg_A 145 LTIDDRIKLINFDLDAGADYVIIEGR 170 (251) T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECCT T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEHH T ss_conf 69999999999999668817886223 No 229 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=25.11 E-value=32 Score=14.30 Aligned_cols=149 Identities=10% Similarity=0.166 Sum_probs=75.6 Q ss_pred HHHHCCEEEE-EC------CCHHHHHHHHHHCCEEEECHHHCCCH-HHHHHHHHCCCEEEEECCC---------CCCHHH Q ss_conf 6652876885-22------88999987650215788225762899-9999985059779983677---------789999 Q gi|254780669|r 111 KKKYGFPILT-DV------HTEQQCEAIADSVDILQIPALLCRQT-DLLTAAAQTGRVINVKKGQ---------FLSPWE 173 (301) Q Consensus 111 k~~~glpv~T-eV------~~~~~~e~~~~~vDilQIgA~~~rqt-dLl~a~a~t~kpV~iKkgq---------~~s~~e 173 (301) -+++|+.++. .. .+-.....++.-+.+=++|.....+. +.+.++.+.|=||+||-.. --+.+| T Consensus 108 l~~~gI~~iGps~~~I~~~~Dr~~~r~~m~~~gvPv~~s~~v~s~eea~~~A~~IGyPViIrps~~~GG~Gm~iv~~~~e 187 (1073) T 1a9x_A 108 LEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREE 187 (1073) T ss_dssp HHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHH T ss_pred HHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCHHH T ss_conf 78779889889999999725999999999977999899722089999999998659988999787789987607779999 Q ss_pred HHHHHHHH-HHCCCCCEEEEECCCC-----------CCCHHHCC--CCCCCHHHH-HHCCCEEECHHHHHHHCCCCCCCC Q ss_conf 99999999-7258780899514654-----------44010000--000106888-518716871177742122345321 Q gi|254780669|r 174 MHNILQKL-HAHGAKDVLFCERGTS-----------FGYNTLVT--DMRSIPIMT-SMGVPVIFDASHSVQQPGIHGNCS 238 (301) Q Consensus 174 ~~~a~eki-~~~Gn~~i~lcERG~~-----------fgy~~lvv--D~~~i~~lk-~~~~PVi~D~SHs~q~p~~~~~~~ 238 (301) +..+++.- ..+|+.+| +.||=.. -+++|.+. -+-++.-+. .++.-+.+=|+..+ + T Consensus 188 L~~~~~~a~~~s~~~~v-liEk~i~g~keIEvqVlrD~~gn~i~v~~~E~~d~~GihtgdsI~vaPa~tL---------~ 257 (1073) T 1a9x_A 188 FEEICARGLDLSPTKEL-LIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTL---------T 257 (1073) T ss_dssp HHHHHHHHHHHCTTSCE-EEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSC---------C T ss_pred HHHHHHHHHHHCCCCCE-EEEEECCCCEEEEEEEEECCCCCEEEEEECHHHHHHCCCCCCEEEEECCCCC---------C T ss_conf 99999999973899867-9998517855899999871799889994101133420224660488127638---------9 Q ss_pred CCC-HHHHHHHHHHHHHHCCC-EEE-EEECCCHH Q ss_conf 263-88999999999971898-899-98369833 Q gi|254780669|r 239 GGE-RQYIVPLAKAAVAIGIA-GIF-LETHQDPD 269 (301) Q Consensus 239 gG~-r~~v~~la~aa~a~G~d-Glf-iE~Hp~P~ 269 (301) .-. ..+-..--+.+-++|+. |.. +|---||+ T Consensus 258 d~~~q~lr~aA~kia~~l~~~~gg~nVqFa~d~~ 291 (1073) T 1a9x_A 258 DKEYQIMRNASMAVLREIGVETGGSNVQFAVNPK 291 (1073) T ss_dssp HHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC T ss_conf 9999999999999999749433663369987489 No 230 >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 Probab=25.00 E-value=33 Score=14.29 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=31.1 Q ss_pred ECCCHHHHH----HHHHHCCEEEECHHHCCC--HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 228899998----765021578822576289--9999998505977998367778999999999999725 Q gi|254780669|r 121 DVHTEQQCE----AIADSVDILQIPALLCRQ--TDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 121 eV~~~~~~e----~~~~~vDilQIgA~~~rq--tdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~ 184 (301) |+.+..++. .+.++++++-||.-+.-+ .++++++.+.+.+|.+-+=.+=-|.-+..+++.+... T Consensus 11 D~~~~~~al~l~~~l~~~i~~iKig~~l~~~~G~~~i~~l~~~~~~If~D~K~~DIgnTv~~~~~~~~~~ 80 (239) T 1dbt_A 11 DFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKERNCELFLDLKLHDIPTTVNKAMKRLASL 80 (239) T ss_dssp CCSSHHHHHHHTGGGTTSCCEEEECHHHHHHHTHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCC T ss_conf 1699999999999828865099988999963498999999976982999851147478999998744125 No 231 >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* Probab=24.93 E-value=33 Score=14.28 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=31.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC--CC----- Q ss_conf 63499999999999999965533997066015576886663222456712488899988665287688522--88----- Q gi|254780669|r 52 CQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDV--HT----- 124 (301) Q Consensus 52 CsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV--~~----- 124 (301) |=+.+.+.++++++.+... -.+||- -+-. |- ..|.+..+++++ ++.+|.-|. || T Consensus 11 LD~~~~~~al~i~~~~~~~------i~~iKi------G~~l--~~----~~G~~~i~~l~~-~~~~If~DlK~~DIgnTv 71 (246) T 2yyu_A 11 LDFPSKQEVERFLRPFAGT------PLFVKV------GMEL--YY----QEGPAIVAFLKE-QGHAVFLDLKLHDIPNTV 71 (246) T ss_dssp CCCSSHHHHHHHHGGGTTS------CCEEEE------CHHH--HH----HHTHHHHHHHHH-TTCEEEEEEEECSCHHHH T ss_pred ECCCCHHHHHHHHHHHCCC------CEEEEE------CHHH--HH----HHCHHHHHHHHH-CCCCEEEEEECCCHHHHH T ss_conf 6589999999999982885------409998------9899--86----409999999997-499889996325628999 Q ss_pred HHHHHHHHH-HCCEEEECH Q ss_conf 999987650-215788225 Q gi|254780669|r 125 EQQCEAIAD-SVDILQIPA 142 (301) Q Consensus 125 ~~~~e~~~~-~vDilQIgA 142 (301) ..++..+.+ .+|++=+-+ T Consensus 72 ~~~~~~~~~~~~d~~tvh~ 90 (246) T 2yyu_A 72 KQAMKGLARVGADLVNVHA 90 (246) T ss_dssp HHHHHHHHHTTCSEEEEEG T ss_pred HHHHHHHHHCCCEEEEEEC T ss_conf 9999999852872999945 No 232 >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Probab=24.91 E-value=33 Score=14.28 Aligned_cols=47 Identities=6% Similarity=-0.102 Sum_probs=19.0 Q ss_pred HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 21578822576289999999850597799836777899999999999 Q gi|254780669|r 134 SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180 (301) Q Consensus 134 ~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~ek 180 (301) -+|++=+-+=+-...+.+.++-+.|+.|..-++.+..+.|+....+. T Consensus 58 ~~Dvvii~tp~~~~~~~~~~~l~~G~~VV~~~~~~~~~~e~~~~l~~ 104 (320) T 1f06_A 58 DVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNE 104 (320) T ss_dssp TCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHH T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH T ss_conf 79999987897168999999998699999828875658789999999 No 233 >2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} Probab=24.86 E-value=33 Score=14.27 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=15.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCEEE Q ss_conf 56712488899988665287688 Q gi|254780669|r 97 GVGLKKGREIFRDLKKKYGFPIL 119 (301) Q Consensus 97 G~Gle~gL~il~e~k~~~glpv~ 119 (301) |+++++-..+.+++++.|-++|- T Consensus 63 Gi~~~~h~~iq~~I~~~~Pv~vs 85 (268) T 2qv6_A 63 GIDLITHKRIQESIRNRYPFTVS 85 (268) T ss_dssp TCCHHHHHHHHHHHHHHSSSCEE T ss_pred CCCHHHHHHHHHHHHHCCCCEEE T ss_conf 99979999999998635881379 No 234 >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Probab=24.50 E-value=33 Score=14.23 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=73.5 Q ss_pred HHHHHHHHHHHCCEEEEEC----CCHH-HHHHH-HHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHH Q ss_conf 8899988665287688522----8899-99876-5021578822576289999999850597799836777899999999 Q gi|254780669|r 104 REIFRDLKKKYGFPILTDV----HTEQ-QCEAI-ADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNI 177 (301) Q Consensus 104 L~il~e~k~~~glpv~TeV----~~~~-~~e~~-~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a 177 (301) -+.++++++..+-|+-..+ ...+ .++.+ .+.++++...+.+-. ++++.+...+..|...-+ ++.+.. T Consensus 52 ~~~i~~~r~~t~~p~gvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p~--~~~~~~~~~g~~v~~~v~---~~~~A~-- 124 (332) T 2z6i_A 52 KANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGNPS--KYMERFHEAGIIVIPVVP---SVALAK-- 124 (332) T ss_dssp HHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSSCGG--GTHHHHHHTTCEEEEEES---SHHHHH-- T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCH--HHHHHHHHHCCEEEECCC---CHHHHH-- T ss_conf 9999999984169705512058888799999998669988998288979--999999970988985587---889999-- Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 99997258780899514654440100000001068885-18716871177742122345321263889999999999718 Q gi|254780669|r 178 LQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIG 256 (301) Q Consensus 178 ~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G 256 (301) +....|.+-+ +++-.-.-|.......+.-+|.+++ ...|||.. |+.. ..+.. .+|+++| T Consensus 125 --~a~~~g~D~l-v~qG~eaGGH~g~~~~~~L~~~v~~~~~vPviaA-----------GGI~-dg~~~-----aaal~lG 184 (332) T 2z6i_A 125 --RMEKIGADAV-IAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAA-----------GGIA-DGEGA-----AAGFMLG 184 (332) T ss_dssp --HHHHTTCSCE-EEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEE-----------SSCC-SHHHH-----HHHHHTT T ss_pred --HHHHHCCCEE-EEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE-----------CCCC-CHHHH-----HHHHHCC T ss_conf --9998689989-9867876788755651125567775068435752-----------3354-28899-----9999759 Q ss_pred CCEEEEEE Q ss_conf 98899983 Q gi|254780669|r 257 IAGIFLET 264 (301) Q Consensus 257 ~dGlfiE~ 264 (301) ++|+.+-| T Consensus 185 A~gV~~GT 192 (332) T 2z6i_A 185 AEAVQVGT 192 (332) T ss_dssp CSEEEECH T ss_pred CCEEEECC T ss_conf 76322376 No 235 >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=24.50 E-value=32 Score=14.31 Aligned_cols=84 Identities=23% Similarity=0.165 Sum_probs=41.0 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCHHH-HHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEE-EECCCCCCHHHHHH Q ss_conf 71248889998866528768852288999-98765021578822576289999999850597799-83677789999999 Q gi|254780669|r 99 GLKKGREIFRDLKKKYGFPILTDVHTEQQ-CEAIADSVDILQIPALLCRQTDLLTAAAQTGRVIN-VKKGQFLSPWEMHN 176 (301) Q Consensus 99 Gle~gL~il~e~k~~~glpv~TeV~~~~~-~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~-iKkgq~~s~~e~~~ 176 (301) |..+++..++-+ ++|++||+|=|-.|-- ...-+|.--+-+-.| ..|.+.++...|+. +==|...|--- T Consensus 145 gyrKA~R~m~~A-ekf~~Piit~IDTpGA~pg~~aEe~Gqa~aIA------~~l~~~~~l~vP~isvIiGEGgSGGA--- 214 (327) T 2f9i_A 145 GYRKALRLMKQA-EKFNRPIFTFIDTKGAYPGKAAEERGQSESIA------TNLIEMASLKVPVIAIVIGEGGSGGA--- 214 (327) T ss_dssp HHHHHHHHHHHH-HHTTCCEEEEEEESCSCCCHHHHHTTHHHHHH------HHHHHHHTCSSCEEEEEEEEEBHHHH--- T ss_pred HHHHHHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCCCCHHHHHH------HHHHHHHCCCCCEEEEEECCCCCCCE--- T ss_conf 999999999999-97499779984279867887744148999999------99999858999979999757555311--- Q ss_pred HHHHHHHCCCCCEEEEECCC Q ss_conf 99999725878089951465 Q gi|254780669|r 177 ILQKLHAHGAKDVLFCERGT 196 (301) Q Consensus 177 a~eki~~~Gn~~i~lcERG~ 196 (301) +.-...+.|+..|-++ T Consensus 215 ----lal~~ad~v~mle~a~ 230 (327) T 2f9i_A 215 ----LGIGIANKVLMLENST 230 (327) T ss_dssp ----HTTCCCSEEEEETTCB T ss_pred ----EEEECCCEEEEECCEE T ss_conf ----3453378488745718 No 236 >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Probab=24.42 E-value=33 Score=14.22 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=26.4 Q ss_pred CCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHH Q ss_conf 587808995146544401000000010688-8518716871177 Q gi|254780669|r 184 HGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASH 226 (301) Q Consensus 184 ~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SH 226 (301) ..|..++.+|-=+.... .+.|+..+..+ ++.+.|+++|-|- T Consensus 138 ~~~tklI~~EspsNP~l--~v~Di~~i~~ia~~~g~~~vvDnT~ 179 (412) T 2cb1_A 138 SAKTRAVFVETVANPAL--LVPDLEALATLAEEAGVALVVDNTF 179 (412) T ss_dssp CTTEEEEEEESSCTTTC--CCCCHHHHHHHHHHHTCEEEEECGG T ss_pred HCCCEEEEEECCCCCCC--CCCCHHHHHHHHHHCCCCEEEECCC T ss_conf 35963999984899886--5123999999998759978995451 No 237 >3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A Probab=24.19 E-value=34 Score=14.19 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=13.7 Q ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 388999999999971898899983698 Q gi|254780669|r 241 ERQYIVPLAKAAVAIGIAGIFLETHQD 267 (301) Q Consensus 241 ~r~~v~~la~aa~a~G~dGlfiE~Hp~ 267 (301) -.+++.-+...+-..|.|-+-+=+--| T Consensus 282 ~~~~~~Hi~~~~~l~G~dhVgiGsDfd 308 (364) T 3ly0_A 282 WEPVLRHLDHLIDRLGEDHVGMGSDFD 308 (364) T ss_dssp SHHHHHHHHHHHHHHCTTSEEECCCBT T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 999999999999970988189843689 No 238 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A Probab=23.84 E-value=34 Score=14.15 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=24.6 Q ss_pred HCCCEEEEECCCC----C---CHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 0597799836777----8---999999999999725878089951465 Q gi|254780669|r 156 QTGRVINVKKGQF----L---SPWEMHNILQKLHAHGAKDVLFCERGT 196 (301) Q Consensus 156 ~t~kpV~iKkgq~----~---s~~e~~~a~eki~~~Gn~~i~lcERG~ 196 (301) ...|||.+-=.|- . .+.....|+.-..+.....|.+|-.|. T Consensus 127 ~~~kPVVlTGAmrp~~~~~sDg~~NL~~Av~~A~~~~~~gV~v~f~~~ 174 (358) T 2him_A 127 NLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNR 174 (358) T ss_dssp TCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHHHSCCSSEEEEETTE T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 789856996888888776763377899999997325778279973477 No 239 >2vy9_A Anti-sigma-factor antagonist; gene regulation, RSBS, stressosome, STAS domain, bacillus subtilis; 2.3A {Moorella thermoacetica} Probab=23.74 E-value=2.2 Score=21.98 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=12.6 Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHC Q ss_conf 9999999718988999836983347 Q gi|254780669|r 247 PLAKAAVAIGIAGIFLETHQDPDNA 271 (301) Q Consensus 247 ~la~aa~a~G~dGlfiE~Hp~P~~A 271 (301) .+.+..-..|..=.+..++|...+. T Consensus 66 ~~~~~~~~~g~~~~l~g~~p~v~~~ 90 (123) T 2vy9_A 66 EISRLAELLGLPFVLTGIKPAVAIT 90 (123) T ss_dssp HHHHHHHHTTCCEEEECCCHHHHHH T ss_pred HHHHHHHHCCCEEEEECCCHHHHHH T ss_conf 9999999769989999389999999 No 240 >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, structural genomics, NPPSFA; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* Probab=23.21 E-value=35 Score=14.07 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=57.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE--CCC-----HH Q ss_conf 49999999999999996553399706601557688666322245671248889998866528768852--288-----99 Q gi|254780669|r 54 IESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTD--VHT-----EQ 126 (301) Q Consensus 54 iES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~Te--V~~-----~~ 126 (301) ..+.+.++++++.+... -.++|. -+.... ..|++.+++++++++.+++-| .|| .. T Consensus 8 ~~~~~~al~i~~~~~~~------i~~iKi------g~~l~~------~~G~~~i~~l~~~~~~~i~~D~K~~Dig~t~~~ 69 (208) T 2czd_A 8 VYEGERAIKIAKSVKDY------ISMIKV------NWPLIL------GSGVDIIRRLKEETGVEIIADLKLADIPNTNRL 69 (208) T ss_dssp CCSHHHHHHHHHHHGGG------CSEEEE------EHHHHH------HHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHH T ss_pred CCCHHHHHHHHHHHCCC------CEEEEE------CHHHHH------HCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHH T ss_conf 99999999999983786------609998------899997------439899999986579829987520135750999 Q ss_pred HHHHHHH-HCCEEEECHHHCCCHHHHHHHHHCCCEEEE Q ss_conf 9987650-215788225762899999998505977998 Q gi|254780669|r 127 QCEAIAD-SVDILQIPALLCRQTDLLTAAAQTGRVINV 163 (301) Q Consensus 127 ~~e~~~~-~vDilQIgA~~~rqtdLl~a~a~t~kpV~i 163 (301) +++.+.+ .+|++-+=+.. -.+.++++.+.++-..+ T Consensus 70 ~~~~~~~~gad~~Tvh~~~--g~~~i~~~~~~~~~~~~ 105 (208) T 2czd_A 70 IARKVFGAGADYVIVHTFV--GRDSVMAVKELGEIIMV 105 (208) T ss_dssp HHHHHHHTTCSEEEEESTT--CHHHHHHHHTTSEEEEE T ss_pred HHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHCCEEE T ss_conf 9999761699889974027--87899877543011146 No 241 >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} Probab=23.18 E-value=35 Score=14.07 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=11.3 Q ss_pred HHHHHHHHHHC-CCEEEE Q ss_conf 99999999718-988999 Q gi|254780669|r 246 VPLAKAAVAIG-IAGIFL 262 (301) Q Consensus 246 ~~la~aa~a~G-~dGlfi 262 (301) +..+..+++-| +|-+.+ T Consensus 298 ~e~ae~~l~~G~aDlV~~ 315 (361) T 3gka_A 298 LDSAQAALDAGQADAVAW 315 (361) T ss_dssp HHHHHHHHHTTSCSEEEE T ss_pred HHHHHHHHHCCCCCCHHH T ss_conf 999999998799756276 No 242 >2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics, NPPSFA; 2.52A {Thermus thermophilus HB8} Probab=23.16 E-value=35 Score=14.06 Aligned_cols=181 Identities=17% Similarity=0.184 Sum_probs=77.9 Q ss_pred CHHHHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE--EC--CCHHHHH- Q ss_conf 999999999999996553399-70660155768866632224567124888999886652876885--22--8899998- Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLNI-GLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT--DV--HTEQQCE- 129 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~~-~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T--eV--~~~~~~e- 129 (301) +++.++.++..+...-..... +.+.= .+|- |.|-.. -...+..+=...|+.|.- |. .-+-.+. T Consensus 41 t~~~v~~i~~a~~~~~~~~~~~~~VvI-G~D~--R~~s~~--------~a~~~~~~l~~~Gi~V~~~~~~g~~pTP~~~~ 109 (524) T 2z0f_A 41 TEAHVLAIAQAIAELRPSFGATGPLFL-AKDT--HALSEP--------AWATALSVFAAHGIEVRVEADGDYTPTPLVSL 109 (524) T ss_dssp CHHHHHHHHHHHHHHTTTTTCCSCEEE-EECS--CTTHHH--------HHHHHHHHHHHTTCCEEEESSSSCCCHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC--CCCHHH--------HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH T ss_conf 999999999999999996599973999-9799--706899--------99999999997799899938998237668999 Q ss_pred HHHH-------HCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHH---HHCCCCCEEEE---E--- Q ss_conf 7650-------215788225762899999998505977998367778999999999999---72587808995---1--- Q gi|254780669|r 130 AIAD-------SVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKL---HAHGAKDVLFC---E--- 193 (301) Q Consensus 130 ~~~~-------~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki---~~~Gn~~i~lc---E--- 193 (301) .+.. +..-+.|-| +.|.. .--|--+.-..|..++++.-..+.+++ ...+...+--. + T Consensus 110 av~~~~~~~~~~~~GImITA--SHNP~-----~~NGiK~~~~~G~~~~~~~~~~Ie~~~~~~~~~~~~~~~~~~~~~~~~ 182 (524) T 2z0f_A 110 AILEHNAHHEAKADGVLLTP--SHNPP-----EDGGFKYNPPTGGPANARITRAIEERANALLQEGLKGVKRLPLREALA 182 (524) T ss_dssp HHHHHHTTCSSCCEEEEECC----CCT-----TCEEEEEECTTSSCCCHHHHHHHHHHHHHHHHTTTTTCCCCCHHHHHH T ss_pred HHHHHHCCCCCCCCEEEEEC--CCCCC-----CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 99984101246671599954--78985-----448657624898736605789999999987653003466577311255 Q ss_pred CCCCCC----CHHHCCCCCCCHHHHHHCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH Q ss_conf 465444----0100000001068885187168711777421223453212638899999999997189889998369833 Q gi|254780669|r 194 RGTSFG----YNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPD 269 (301) Q Consensus 194 RG~~fg----y~~lvvD~~~i~~lk~~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~P~ 269 (301) +...+. |-..+...-.....+..++.|++||-|.+ -..+++.+.+ .+|++-..++..++|. T Consensus 183 ~~~~~d~~~~Y~~~l~~~i~~~~~~~~~~kIvvD~~~G~------------~~~~~~~ll~---~lG~~v~~i~~~~d~~ 247 (524) T 2z0f_A 183 RAKPFDYAGLYVEKVAEAVDLEAIRASGLRIGVDPLGGA------------SLRVWERLAE---SHGLPLEVVNPTLDPT 247 (524) T ss_dssp HCEEECHHHHHHHHGGGTSCHHHHHHSCCCEEEECTTST------------THHHHHHHHH---HHTCCEEEC------- T ss_pred CEEEECHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCCC------------CHHHHHHHHH---HHCCCEEEECCCCCCC T ss_conf 215611288899865401461001356877999679884------------1345677888---7288215756725787 No 243 >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Probab=22.88 E-value=36 Score=14.03 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=49.8 Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC--------C--------------CCCCCCCCCCCCCCCCC Q ss_conf 7069995486349999999999999996553399706601--------5--------------57688666322245671 Q gi|254780669|r 43 QRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKS--------S--------------FDKANRSSLAGKRGVGL 100 (301) Q Consensus 43 ~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~--------s--------------fdKanRtS~~sfrG~Gl 100 (301) .|+++|+||-+.=--+.+++.|+.+..--....=--+||. + .+....-|...|. T Consensus 5 ~~vi~I~GpTasGKt~la~~lA~~~~~eIIsaDS~QvYr~l~IgTaKpt~~e~~~i~Hhlid~~~p~~~~sv~~f~---- 80 (323) T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFR---- 80 (323) T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHH---- T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCCCCCEEHHHHH---- T ss_conf 9689998977116999999999987997995124877299966888999999918997344433877677099999---- Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHH Q ss_conf 248889998866528768852288999987650 Q gi|254780669|r 101 KKGREIFRDLKKKYGFPILTDVHTEQQCEAIAD 133 (301) Q Consensus 101 e~gL~il~e~k~~~glpv~TeV~~~~~~e~~~~ 133 (301) +.+.+.++++..+-.+||+.= -.--.++.+.+ T Consensus 81 ~~a~~~i~~i~~~gk~PIiVG-GTglYl~aLl~ 112 (323) T 3crm_A 81 ADALAAMAKATARGRIPLLVG-GTMLYYKALLE 112 (323) T ss_dssp HHHHHHHHHHHHTTCEEEEEE-SCHHHHHHHHC T ss_pred HHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHC T ss_conf 999999999983599408975-61399999983 No 244 >2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=22.81 E-value=36 Score=14.02 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=29.6 Q ss_pred CCHHHCCCCC-CCHHHHHHCCCEEECHHHHHHHCCCCCC--C-CCCCHHHHHHH----HHHHHHHCCCEEEEEEC Q ss_conf 4010000000-1068885187168711777421223453--2-12638899999----99999718988999836 Q gi|254780669|r 199 GYNTLVTDMR-SIPIMTSMGVPVIFDASHSVQQPGIHGN--C-SGGERQYIVPL----AKAAVAIGIAGIFLETH 265 (301) Q Consensus 199 gy~~lvvD~~-~i~~lk~~~~PVi~D~SHs~q~p~~~~~--~-~gG~r~~v~~l----a~aa~a~G~dGlfiE~H 265 (301) |++..+.|.. .....++.++||++-|++. +.|. . .-...++-..+ ..|..++|=+.+|+|-- T Consensus 26 g~~~~~~~~~ea~~~a~~iG~Pv~vKaa~G-----GGG~Gm~iv~~~~el~~a~~~a~~eA~~~Fgd~~v~iEk~ 95 (108) T 2cqy_A 26 GFDGVVKDAEEAVRIAREIGYPVMIKASAG-----GGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKF 95 (108) T ss_dssp CCCSCBSSHHHHHHHHHHHCSSEEEEETTS-----CCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEEC T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEECCCC-----CCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 869888999999999987199749881456-----7544027868999999999998899997079997898870 No 245 >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Probab=22.65 E-value=36 Score=14.00 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=25.0 Q ss_pred HHHHHHHHCCCEEEEECCCC---------CCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 99999850597799836777---------899999999999972587808995146 Q gi|254780669|r 149 DLLTAAAQTGRVINVKKGQF---------LSPWEMHNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 149 dLl~a~a~t~kpV~iKkgq~---------~s~~e~~~a~eki~~~Gn~~i~lcERG 195 (301) +.++.+.+.|-||+||=... -+.+|+..+.+...+....+-++.|+= T Consensus 225 ea~~~A~~IGyPVivKps~ggGGrGm~iv~~~~el~~a~~~a~~~~~~~~vliEk~ 280 (554) T 1w96_A 225 DGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKL 280 (554) T ss_dssp HHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEEC T ss_pred HHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 99999975698789972356887367997274776666788886268986799982 No 246 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Probab=22.57 E-value=36 Score=13.99 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=28.8 Q ss_pred HHHHHHHHCCCEEEEECCCC---------CCHHHHHHHHHHH-----HHCCCCCEEEEECCC Q ss_conf 99999850597799836777---------8999999999999-----725878089951465 Q gi|254780669|r 149 DLLTAAAQTGRVINVKKGQF---------LSPWEMHNILQKL-----HAHGAKDVLFCERGT 196 (301) Q Consensus 149 dLl~a~a~t~kpV~iKkgq~---------~s~~e~~~a~eki-----~~~Gn~~i~lcERG~ 196 (301) ++++.+.+.|-||+||--.. -+.+|...+.++. .++|+.+|+ .|+=. T Consensus 142 ea~~~a~~IGyPviIKas~ggGGrGmriV~~~~el~~a~~~a~~ea~~~f~~~~v~-iE~~i 202 (451) T 2vpq_A 142 EAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLY-MEKFI 202 (451) T ss_dssp HHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEE-EEECC T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCEE-EEEEC T ss_conf 99999987399699998878998862687582456999999999998547998389-99735 No 247 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=22.47 E-value=36 Score=13.98 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=27.9 Q ss_pred EEEECCCHHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEE Q ss_conf 885228899998765021578822576289999999850597799 Q gi|254780669|r 118 ILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVIN 162 (301) Q Consensus 118 v~TeV~~~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~ 162 (301) +..|+.+++.++.+..-+|++.+-...-.+..+++++.++|.++. T Consensus 53 ~~~d~~d~~~l~~~l~~~DvVi~~~p~~~~~~ia~aa~~~g~~~~ 97 (118) T 3ic5_A 53 KQVDAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYF 97 (118) T ss_dssp EECCTTCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEE T ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEE T ss_conf 112448999999998599899983783045999999999099979 No 248 >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Probab=22.32 E-value=37 Score=13.96 Aligned_cols=179 Identities=15% Similarity=0.097 Sum_probs=93.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCEEEEEC--CC-HHH Q ss_conf 634999999999999999655339970660155768866632224567124888999886652-87688522--88-999 Q gi|254780669|r 52 CQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKY-GFPILTDV--HT-EQQ 127 (301) Q Consensus 52 CsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~-glpv~TeV--~~-~~~ 127 (301) |=+.+.++++++++.+...- .++|-.++- | +..|.++++++++.+ +.++.-|. ++ +.. T Consensus 7 lD~~~~~~~l~~~~~~~~~v------~~iKig~~l--------~----~~~G~~~i~~l~~~~~~~~i~~D~k~~di~~t 68 (207) T 3ajx_A 7 IDLLSTEAALELAGKVAEYV------DIIELGTPL--------I----KAEGLSVITAVKKAHPDKIVFADMKTMDAGEL 68 (207) T ss_dssp ECCSCHHHHHHHHHHHGGGC------SEEEECHHH--------H----HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHH T ss_pred ECCCCHHHHHHHHHHHCCCC------CEEEECHHH--------H----HHCCHHHHHHHHHHCCCCEEECCCCCCCCCHH T ss_conf 17999999999999708867------899955499--------8----85599999999873799464011212159768 Q ss_pred H-HHHHH-HCCEEEECHHHCCCH--HHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH Q ss_conf 9-87650-215788225762899--9999985059779983677789999999999997258780899514654440100 Q gi|254780669|r 128 C-EAIAD-SVDILQIPALLCRQT--DLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTL 203 (301) Q Consensus 128 ~-e~~~~-~vDilQIgA~~~rqt--dLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~l 203 (301) . +.+.+ .+|++=+-++....+ ..++++.+.+..+.+--....++. ..++.+...|. +.+.+++|....... T Consensus 69 ~~~~~~~~gad~itvH~~~g~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~- 143 (207) T 3ajx_A 69 EADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKA---TRAQEVRALGA-KFVEMHAGLDEQAKP- 143 (207) T ss_dssp HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHH---HHHHHHHHTTC-SEEEEECCHHHHTST- T ss_pred HHHHHHHHCCCEEEEEHHHCHHHHHHHHHHHHHCCCEEEEEECCCCCHH---HHHHHHHHHCC-CEEEEECCCCCCCCC- T ss_conf 9999998199999985542445699999999972983799935899979---99999997239-799980355545456- Q ss_pred CCCCCCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE----CCCHHHC Q ss_conf 000001068885-1871687117774212234532126388999999999971898899983----6983347 Q gi|254780669|r 204 VTDMRSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET----HQDPDNA 271 (301) Q Consensus 204 vvD~~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~----Hp~P~~A 271 (301) ..++..+..+++ ...++..|+ |.|.. -...++.+|+|.+.+-. ..||.++ T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~g---------------Gi~~~---~~~~a~~~GaD~iVvGr~I~~a~dP~~~ 198 (207) T 3ajx_A 144 GFDLNGLLAAGEKARVPFSVAG---------------GVKVA---TIPAVQKAGAEVAVAGGAIYGAADPAAA 198 (207) T ss_dssp TCCTHHHHHHHHHHTSCEEEES---------------SCCGG---GHHHHHHTTCSEEEESHHHHTSSSHHHH T ss_pred CCHHHHHHHHHHCCCCCEEECC---------------CCCCC---CHHHHHHCCCCEEEECHHHCCCCCHHHH T ss_conf 3138899999860377677897---------------98815---8999998597999986466189999999 No 249 >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Probab=22.13 E-value=37 Score=13.93 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHCCEEEE--ECCCHHHHHHH-HH-HCCEEEECHHHCCCHHHHHHHH Q ss_conf 888999886652876885--22889999876-50-2157882257628999999985 Q gi|254780669|r 103 GREIFRDLKKKYGFPILT--DVHTEQQCEAI-AD-SVDILQIPALLCRQTDLLTAAA 155 (301) Q Consensus 103 gL~il~e~k~~~glpv~T--eV~~~~~~e~~-~~-~vDilQIgA~~~rqtdLl~a~a 155 (301) -+.+.+.+|+..++||+. -++++++++.+ .+ .+|++-+|--+..+.||...+. T Consensus 279 ~~~~~~~i~~~~~~pvi~~g~~~~~~~a~~~l~~g~~D~v~~gR~~iadP~~~~k~~ 335 (729) T 1o94_A 279 TIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335 (729) T ss_dssp THHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHCCCHHHHHHH T ss_conf 524899987642887204688689999999998799870112479772942777865 No 250 >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Probab=21.90 E-value=37 Score=13.90 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=62.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHH-HHHHHHC-----CEEEECHHHCCCHHHHHHHHHCC-CEEEEEC- Q ss_conf 22456712488899988665287688522889999-8765021-----57882257628999999985059-7799836- Q gi|254780669|r 94 GKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQC-EAIADSV-----DILQIPALLCRQTDLLTAAAQTG-RVINVKK- 165 (301) Q Consensus 94 sfrG~Gle~gL~il~e~k~~~glpv~TeV~~~~~~-e~~~~~v-----DilQIgA~~~rqtdLl~a~a~t~-kpV~iKk- 165 (301) .+.+.| ....+.=+++++-+|.+-..=|..-..+ ..+.... |-+=+|++.|--| ..++-..| +||.+-= T Consensus 36 ~~~~~g-~~~~~fE~~~a~~~g~k~ai~~~sgT~Al~lal~~l~~~~gdeVi~p~~t~~a~--~~~i~~~g~~pv~~Di~ 112 (418) T 2c81_A 36 YWTGEE-SMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIAT--ATAVLNVNALPVFVDVE 112 (418) T ss_dssp BCCSSC-CHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHH--HHHHHHTTCEEEEECBC T ss_pred CCCCCC-HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHH--HHHHHHCCCEEEEECCC T ss_conf 405898-699999999999978595999778799999999984989719999899750999--99999839987773145 Q ss_pred --CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHH Q ss_conf --777899999999999972587808995146544401000000010688-851871687117774 Q gi|254780669|r 166 --GQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSV 228 (301) Q Consensus 166 --gq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~ 228 (301) ...+++++ ++..-.++.-+.-=-..+|+. .|+..+..+ ++.++|||.|++||. T Consensus 113 ~~~~~~~~~~-------~~~~~~~~t~ai~~vh~~G~~---~d~~~I~~ia~~~~i~vIeD~a~a~ 168 (418) T 2c81_A 113 ADTYCIDPQL-------IKSAITDKTKAIIPVHLFGSM---ANMDEINEIAQEHNLFVIEDCAQSH 168 (418) T ss_dssp TTTCSBCHHH-------HGGGCCTTEEEECCBCCTTCC---CCHHHHHHHHHHTTCEEEEECTTCT T ss_pred CCCCCCCHHH-------HHHHHCCCCCEEEEECCCCCC---CCHHHHHHHHHHCCCEEEECCCHHH T ss_conf 6411134588-------999734676226753047751---5799999999984988997375441 No 251 >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} SCOP: c.1.2.4 PDB: 1wxj_A* Probab=21.83 E-value=37 Score=13.89 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=102.3 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC-----CCCCCCC-CCCCCHHHHHHHHHHHHHHCCEE Q ss_conf 999548634999999999999999655339-9706601557688-----6663222-45671248889998866528768 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKAN-----RSSLAGK-RGVGLKKGREIFRDLKKKYGFPI 118 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKan-----RtS~~sf-rG~Gle~gL~il~e~k~~~glpv 118 (301) .+.|| -=+.+...++.+.+.+ |+++. +|.=| |-+.|- +++..+. .|..+++-++++++++++.+.|+ T Consensus 21 YltaG---~P~~~~~~~~l~~l~~-gaDiiEiGiPf--SDP~aDGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~p~ 94 (271) T 1ujp_A 21 YLTAG---FPSREGFLQAVEEVLP-YADLLEIGLPY--SDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPL 94 (271) T ss_dssp EEETT---SSCHHHHHHHHHHHGG-GCSSEEEECCC--CC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCE T ss_pred EEECC---CCCHHHHHHHHHHHHC-CCCEEEECCCC--CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 98270---8987899999999766-99989968998--886655699999998888679966889999999862379755 Q ss_pred EE--ECCC------HHHHHHHHH-HCCEEEECHHHCC-CHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 85--2288------999987650-2157882257628-9999999850597-7998367778999999999999725878 Q gi|254780669|r 119 LT--DVHT------EQQCEAIAD-SVDILQIPALLCR-QTDLLTAAAQTGR-VINVKKGQFLSPWEMHNILQKLHAHGAK 187 (301) Q Consensus 119 ~T--eV~~------~~~~e~~~~-~vDilQIgA~~~r-qtdLl~a~a~t~k-pV~iKkgq~~s~~e~~~a~eki~~~Gn~ 187 (301) +- =... .+-++.+++ .+|-+=||---.. ..++..++.+.+. +|.+=-+ .++++ -.+++.+.... T Consensus 95 vlM~Y~N~~~~~G~~~F~~~~~~aGvdG~iipDLP~ee~~~~~~~~~~~gl~~I~lvaP--tt~~~---Ri~~i~~~s~g 169 (271) T 1ujp_A 95 FLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAP--TSTDA---RIATVVRHATG 169 (271) T ss_dssp EEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECT--TCCHH---HHHHHHTTCCS T ss_pred EEEEECCHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC--CCCHH---HHHHHHHHCCC T ss_conf 99984442441673788899987398423247785221378999998569867999478--88578---99999973987 Q ss_pred CEEE-EECCCCCCCHHHCCCCC-CCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 0899-51465444010000000-10688851-871687117774212234532126388999999999971898899983 Q gi|254780669|r 188 DVLF-CERGTSFGYNTLVTDMR-SIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLET 264 (301) Q Consensus 188 ~i~l-cERG~~fgy~~lvvD~~-~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~ 264 (301) =|.+ .-.|+|-....+-.++. .+..+|+. ..||++---.+ .++-+. ...++||+.+=+ T Consensus 170 FiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~-------------t~e~~~------~~~~ADGvIVGS 230 (271) T 1ujp_A 170 FVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVS-------------GKATAA------QAAVADGVVVGS 230 (271) T ss_dssp CEEEECC------------CCHHHHHHHHTTCCSCEEEESCCC-------------SHHHHH------HHTTSSEEEECH T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCC-------------CHHHHH------HHCCCCEEEECH T ss_conf 0788403677776655523589999875105689759980779-------------889998------746899899859 Q ss_pred CC Q ss_conf 69 Q gi|254780669|r 265 HQ 266 (301) Q Consensus 265 Hp 266 (301) +- T Consensus 231 a~ 232 (271) T 1ujp_A 231 AL 232 (271) T ss_dssp HH T ss_pred HH T ss_conf 99 No 252 >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA; 2.00A {Aquifex aeolicus VF5} Probab=21.82 E-value=37 Score=13.89 Aligned_cols=212 Identities=15% Similarity=0.206 Sum_probs=106.1 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC-----CCCCCCC-CCCCCHHHHHHHHHHHHH-HCCE Q ss_conf 999548634999999999999999655339-9706601557688-----6663222-456712488899988665-2876 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKAN-----RSSLAGK-RGVGLKKGREIFRDLKKK-YGFP 117 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKan-----RtS~~sf-rG~Gle~gL~il~e~k~~-~glp 117 (301) .+.+|= -+.+...++++.+.+.|.++. +|.=|- -+.|- +++..+. .|..+++.++++++++++ ..+| T Consensus 22 y~t~G~---P~~~~~~~~~~~l~~~G~d~iElGiPfS--DP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~p 96 (262) T 2ekc_A 22 YLMVGY---PDYETSLKAFKEVLKNGTDILEIGFPFS--DPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIP 96 (262) T ss_dssp EEETTS---SCHHHHHHHHHHHHHTTCSEEEEECCCS--CCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSC T ss_pred EEECCC---CCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 882837---9868999999999976999999789999--86544899999999999789977776654333102378878 Q ss_pred EEEECC--------CHHHHHHHHH-HCCEEEECHHHCCC-HHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 885228--------8999987650-21578822576289-999999850597-799836777899999999999972587 Q gi|254780669|r 118 ILTDVH--------TEQQCEAIAD-SVDILQIPALLCRQ-TDLLTAAAQTGR-VINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 118 v~TeV~--------~~~~~e~~~~-~vDilQIgA~~~rq-tdLl~a~a~t~k-pV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) ++-=-- ....+..+++ .+|-+=||-.--.. .++..++.+.+. +|.+=-+ -.+.+.+ +.+.+... T Consensus 97 ivlm~Y~N~i~~~G~~~f~~~~~~~Gv~gviipDlp~ee~~~~~~~~~~~gl~~I~lvsp-~t~~~ri----~~i~~~s~ 171 (262) T 2ekc_A 97 FLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAP-TSTRKRI----KLICEAAD 171 (262) T ss_dssp EEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECT-TCCHHHH----HHHHHHCS T ss_pred EEEEECCCHHHHCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHH----HHHHHCCC T ss_conf 899950434400678999999997697578615886676677776752055446763588-8868888----88875156 Q ss_pred CCEEEE-ECCCCCCCHH-HC-CCC-CCCHHHHH-HCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE Q ss_conf 808995-1465444010-00-000-01068885-1871687117774212234532126388999999999971898899 Q gi|254780669|r 187 KDVLFC-ERGTSFGYNT-LV-TDM-RSIPIMTS-MGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIF 261 (301) Q Consensus 187 ~~i~lc-ERG~~fgy~~-lv-vD~-~~i~~lk~-~~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlf 261 (301) .=+.+. ..|+| |.++ +- .++ ..+..+|+ +..||++---=+ .++-+ + .+..++||+. T Consensus 172 gfiY~vs~~GvT-G~~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~-------------~~e~v----~-~~~~~ADgvV 232 (262) T 2ekc_A 172 EMTYFVSVTGTT-GAREKLPYERIKKKVEEYRELCDKPVVVGFGVS-------------KKEHA----R-EIGSFADGVV 232 (262) T ss_dssp SCEEEESSCC----------CHHHHHHHHHHHHHCCSCEEEESSCC-------------SHHHH----H-HHHTTSSEEE T ss_pred CEEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCC-------------CHHHH----H-HHHHCCCEEE T ss_conf 426772135636-756656502578999998512688758862659-------------99999----9-9982199999 Q ss_pred EEECCCHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 9836983347978201868899999999999 Q gi|254780669|r 262 LETHQDPDNAPSDGPNMINIKDLPKLLSQLL 292 (301) Q Consensus 262 iE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~ 292 (301) +=++-= +.+.+ =..+.+.+++++++ T Consensus 233 VGSaiv--k~i~~----~~~~~~~~~i~~lk 257 (262) T 2ekc_A 233 VGSALV--KLAGQ----KKIEDLGNLVKELK 257 (262) T ss_dssp ECHHHH--HHHHT----TCHHHHHHHHHHHH T ss_pred ECHHHH--HHHHH----CCHHHHHHHHHHHH T ss_conf 878999--99875----67999999999999 No 253 >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, joint center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 1h0c_A* 1j04_A* Probab=21.55 E-value=38 Score=13.86 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=56.0 Q ss_pred HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHH Q ss_conf 02157882257628999999985059779983677789999999999997258780899514654440100000001068 Q gi|254780669|r 133 DSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPI 212 (301) Q Consensus 133 ~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~ 212 (301) +.+.+...+.+-.+-.++....+.....+....+....+.+.. +........-|.+++=-++.|..+ |+..+.. T Consensus 99 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~t~tG~~~---pi~~i~~ 172 (393) T 3kgw_A 99 DSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVE---EGLAQHKPVLLFLVHGESSTGVVQ---PLDGFGE 172 (393) T ss_dssp CEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHH---HHHHHHCCSEEEEESEETTTTEEC---CCTTHHH T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHH---HHHHCCCCEEEEEEEEECCCCCCC---CHHHHHH T ss_conf 8125512663899999999985896311047988877989999---987459970899972203554558---8999999 Q ss_pred H-HHHCCCEEECHHHHH Q ss_conf 8-851871687117774 Q gi|254780669|r 213 M-TSMGVPVIFDASHSV 228 (301) Q Consensus 213 l-k~~~~PVi~D~SHs~ 228 (301) + ++.+..+++|++||. T Consensus 173 ~~~~~g~~~~vDa~~s~ 189 (393) T 3kgw_A 173 LCHRYQCLLLVDSVASL 189 (393) T ss_dssp HHHHTTCEEEEECTTTT T ss_pred HHHHCCCCEEEEECCCC T ss_conf 99873990799701444 No 254 >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Probab=21.51 E-value=38 Score=13.85 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=58.2 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC Q ss_conf 69995486349999999999999996553399706601557688666322245671248889998866528768852288 Q gi|254780669|r 45 FVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVHT 124 (301) Q Consensus 45 l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~~ 124 (301) |-+|.||=-----..+++.+..++..+.+ -.+|||+.|. |.+.+ .--..|.. + +-+ .+.. T Consensus 22 L~li~GpMfSGKTteLi~~~~~~~~~~kk---vlvikp~~D~--Ry~~~----i~sh~g~~--------~--~a~-~~~~ 81 (195) T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYK---CLVIKYAKDT--RYSSS----FCTHDRNT--------M--EAL-PACL 81 (195) T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCC---EEEEEETTCC--CGGGS----CCHHHHHH--------S--EEE-EESS T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCC---EEEEEECCCC--CCCCC----CEEECCCE--------E--EEE-EECC T ss_conf 99999251768999999999999987990---9999866665--56874----43204861--------6--788-8566 Q ss_pred HHHHHHHHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 99998765021578822576289999999850597799836777899999999999972587808995 Q gi|254780669|r 125 EQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFC 192 (301) Q Consensus 125 ~~~~e~~~~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKkgq~~s~~e~~~a~eki~~~Gn~~i~lc 192 (301) . .+++.... .--.|.|--+||.. +....++.+...| ..|+++ T Consensus 82 ~----------------------~~~~~~~~-~~d~I~IDEaQFf~--di~~~v~~l~~~~-~~Viv~ 123 (195) T 1w4r_A 82 L----------------------RDVAQEAL-GVAVIGIDEGQFFP--DIVEFCEAMANAG-KTVIVA 123 (195) T ss_dssp G----------------------GGGHHHHH-TCSEEEESSGGGCT--THHHHHHHHHHTT-CEEEEE T ss_pred H----------------------HHHHHHHC-CCCEEEEEHHHHHH--HHHHHHHHHHHCC-CEEEEE T ss_conf 9----------------------99986415-68799996245658--7999999998269-718999 No 255 >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3lb0_A* 3l2i_A* 3nnt_A* 3m7w_A* 1gqn_A 1l9w_A* 1qfe_A* Probab=21.42 E-value=38 Score=13.84 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=136.9 Q ss_pred CCEEEECCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-CCHHH Q ss_conf 77068357877279769970699954863499999999999999965533997066015576886663222456-71248 Q gi|254780669|r 25 NAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGV-GLKKG 103 (301) Q Consensus 25 ~~~~~ig~~~~~i~ig~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~-Gle~g 103 (301) .+.++|+ ++.+|.+.|- |.-|-+-.+.+.+++-|+.+++.+.++. =|+- +.|.+. -.++- T Consensus 25 m~~v~v~----~~~~g~g~Pk--IcVpi~~~t~~e~l~~a~~~~~~~aDlv---E~Rl----------D~l~~~~~~~~~ 85 (276) T 3o1n_A 25 MKTVTVR----DLVVGEGAPK--IIVSLMGKTITDVKSEALAYREADFDIL---EWRV----------DHFANVTTAESV 85 (276) T ss_dssp CCCEEET----TEEETSSSCE--EEEEECCSSHHHHHHHHHHHTTSCCSEE---EEEG----------GGCTTTTCHHHH T ss_pred CCEEEEC----CEEECCCCCE--EEEEECCCCHHHHHHHHHHHHCCCCCEE---EEEE----------CCCCCCCCHHHH T ss_conf 7169985----7897599968--9999688999999999998601799989---9976----------235777988999 Q ss_pred HHHHHHHHHHH-CCEEEEECCCH-----------HHHHHH---H--HHCCEEEECHHHCCC--HHHHHHHHHCCCEEEEE Q ss_conf 88999886652-87688522889-----------999876---5--021578822576289--99999985059779983 Q gi|254780669|r 104 REIFRDLKKKY-GFPILTDVHTE-----------QQCEAI---A--DSVDILQIPALLCRQ--TDLLTAAAQTGRVINVK 164 (301) Q Consensus 104 L~il~e~k~~~-glpv~TeV~~~-----------~~~e~~---~--~~vDilQIgA~~~rq--tdLl~a~a~t~kpV~iK 164 (301) ++.+..+++.+ ++|++--+... +.++.+ . ..+|.+-|=.+.-+. .+++..+.+.+..|.+= T Consensus 86 ~~~~~~lr~~~~~~PiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~IDIEl~~~~~~~~~l~~~a~~~~~~vI~S 165 (276) T 3o1n_A 86 LEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMS 165 (276) T ss_dssp HHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 99999999735899789997975669998899999999999999808997796431261889999999875259679998 Q ss_pred CCCC---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHHHHH--CCCEEECHHHHHHHCCCCCCCCC Q ss_conf 6777---899999999999972587808995146544401000000010688851--87168711777421223453212 Q gi|254780669|r 165 KGQF---LSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSM--GVPVIFDASHSVQQPGIHGNCSG 239 (301) Q Consensus 165 kgq~---~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~lk~~--~~PVi~D~SHs~q~p~~~~~~~g 239 (301) .+-| .+.+++....+++.+.|.+=+-++=.-.+ +.+...-+.....+++. ..|+|.=+-= .. T Consensus 166 ~HdF~~tP~~~el~~~~~~m~~~gaDivKiA~~~~~--~~D~l~ll~~~~~~~~~~~~~PlI~~~MG-----------~~ 232 (276) T 3o1n_A 166 NHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQT--KADVLTLLTATVEMQERYADRPIITMSMS-----------KT 232 (276) T ss_dssp EEESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSS--HHHHHHHHHHHHHHHHHTCCSCCEEEECS-----------GG T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHCCCCCEEEEECC-----------CC T ss_conf 614889989999999999998628998999980699--88999999999999961789988999789-----------88 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 63889999999999718988999836983347978201868899999999999 Q gi|254780669|r 240 GERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLL 292 (301) Q Consensus 240 G~r~~v~~la~aa~a~G~dGlfiE~Hp~P~~AlsD~~q~l~l~~l~~ll~~l~ 292 (301) |+-.=+ ++-.+|-.--|.=. +. .-+|-|++.+++..+++-|- T Consensus 233 G~~SRi-----~~~~~GS~~Tfa~l-~~-----~sAPGQi~v~~l~~il~~L~ 274 (276) T 3o1n_A 233 GVISRL-----AGEVFGSAATFGAV-KK-----ASAPGAISVADLRTVLTILH 274 (276) T ss_dssp GTHHHH-----CHHHHTCCEEECBS-SC-----CSSTTCCBHHHHHHHHHHHH T ss_pred CHHHHH-----HHHHHCCCEEECCC-CC-----CCCCCCCCHHHHHHHHHHHC T ss_conf 779999-----79986982583578-99-----98999867999999999855 No 256 >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* Probab=21.40 E-value=38 Score=13.84 Aligned_cols=118 Identities=8% Similarity=0.030 Sum_probs=68.7 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCHHHHHH-HHH-----HCCEEEECHHHCCCHHHHHHHHHCC-CEEEEE--CCCCCCHH Q ss_conf 48889998866528768852288999987-650-----2157882257628999999985059-779983--67778999 Q gi|254780669|r 102 KGREIFRDLKKKYGFPILTDVHTEQQCEA-IAD-----SVDILQIPALLCRQTDLLTAAAQTG-RVINVK--KGQFLSPW 172 (301) Q Consensus 102 ~gL~il~e~k~~~glpv~TeV~~~~~~e~-~~~-----~vDilQIgA~~~rqtdLl~a~a~t~-kpV~iK--kgq~~s~~ 172 (301) ...+.=+++++.+|.+-.-=|..-..+-. +.. -=|-+-+|++.|--+- .++...| +||.+- ...+.... T Consensus 33 ~v~~fE~~~~~~~~~~~av~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~~~~--~~~~~~g~~~v~~d~~~~~~~~~~ 110 (394) T 1o69_A 33 FVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASV--APICYLKAKPVFIDCDETYNIDVD 110 (394) T ss_dssp HHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGT--HHHHHTTCEEEEECBCTTSSBCHH T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCCEEC--HHHHHCCEEEEEECCCCCCCCCHH T ss_conf 999999999999784949997887999999999869888699993898601021--236526618987336665232357 Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHH Q ss_conf 99999999972587808995146544401000000010688-851871687117774 Q gi|254780669|r 173 EMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSV 228 (301) Q Consensus 173 e~~~a~eki~~~Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~ 228 (301) +.....+ ....+...++..-. ||+. .|+..+..+ ++.++|||-|++||. T Consensus 111 ~~~~~~~--~~~~~~~~ii~~~~--~G~~---~d~~~i~~~~~~~~i~lIED~A~a~ 160 (394) T 1o69_A 111 LLKLAIK--ECEKKPKALILTHL--YGNA---AKMDEIVEICKENDIVLIEDAAEAL 160 (394) T ss_dssp HHHHHHH--HCSSCCCEEEEECG--GGCC---CCHHHHHHHHHHTTCEEEEECTTCT T ss_pred HHHHHHH--CCCCCCEEEEEECC--CCCC---HHHHHHHHHHHHCCCEEEECCHHHH T ss_conf 7999985--03568569998247--8885---1689999999975986884130432 No 257 >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural genomics, NPPSFA; 1.85A {Methanocaldococcus jannaschii} Probab=21.38 E-value=38 Score=13.83 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=49.1 Q ss_pred HHHHHHHHHHHHHHCCEEEEECCCHHHHH---HHHHHCCEEEECHHH-CCCHHHHHHHHHC--CCEEEEECCCCCCHHHH Q ss_conf 24888999886652876885228899998---765021578822576-2899999998505--97799836777899999 Q gi|254780669|r 101 KKGREIFRDLKKKYGFPILTDVHTEQQCE---AIADSVDILQIPALL-CRQTDLLTAAAQT--GRVINVKKGQFLSPWEM 174 (301) Q Consensus 101 e~gL~il~e~k~~~glpv~TeV~~~~~~e---~~~~~vDilQIgA~~-~rqtdLl~a~a~t--~kpV~iKkgq~~s~~e~ 174 (301) ++=.+++.++-++|.+--+-|=.+.++.+ .+.+-.++.=||-.+ +.|.+.|+..-+. --.|+||=.|..|+.|. T Consensus 270 ~e~i~~y~~li~~yPI~sIEDp~~e~D~~gw~~lt~~l~~~ivGDDl~~Tn~~rl~~gi~~~~~nailiK~NQiGTvtet 349 (427) T 2pa6_A 270 EELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEA 349 (427) T ss_dssp HHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHSSSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHH T ss_pred HHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCEEEECHHHHCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHH T ss_conf 99999999999869988996898756599999999863938977054057689999876516775305325442009999 Q ss_pred HHHHHHHHHCCCCCEEEEECC Q ss_conf 999999972587808995146 Q gi|254780669|r 175 HNILQKLHAHGAKDVLFCERG 195 (301) Q Consensus 175 ~~a~eki~~~Gn~~i~lcERG 195 (301) +.+++...+.|- .+++.+|= T Consensus 350 ~ea~~la~~~g~-~~ivShRS 369 (427) T 2pa6_A 350 VDAAQLAFRNGY-GVVVSHRS 369 (427) T ss_dssp HHHHHHHHTTTC-EEEEECCS T ss_pred HHHHHHHHHCCC-EEEEECCC T ss_conf 999999998799-89995788 No 258 >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytoplasmid or periplasmic), drug target functions, structural genomics; 1.40A {Yersinia pestis} PDB: 1igw_A Probab=21.24 E-value=38 Score=13.81 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=10.5 Q ss_pred EECCCHHHHHHHHHH-CCEEEECH Q ss_conf 522889999876502-15788225 Q gi|254780669|r 120 TDVHTEQQCEAIADS-VDILQIPA 142 (301) Q Consensus 120 TeV~~~~~~e~~~~~-vDilQIgA 142 (301) --++++-|+-.+.++ .+.+.+.- T Consensus 70 ~Ga~d~~~A~~~~kaGf~aiYlSG 93 (435) T 3lg3_A 70 LGALTGGQALQQAKAGVEAIYMSG 93 (435) T ss_dssp EBCCSHHHHHHHHHHTCCSEEECH T ss_pred CCCCCHHHHHHHHHHCCCEEEECC T ss_conf 675688999999983997798533 No 259 >3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Probab=21.11 E-value=20 Score=15.62 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=16.9 Q ss_pred CCEEECCCCCEEEE-ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC Q ss_conf 72797699706999-5486349999999999999996553399706601 Q gi|254780669|r 35 NQVTFSNEQRFVLI-AGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKS 82 (301) Q Consensus 35 ~~i~ig~~~~l~iI-AGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~ 82 (301) |-.-|.+++. +|| +|. ....-.+-+.+.+....-.+.+++=. T Consensus 44 N~YlI~~d~~-vLIDtG~-----~~~~~~~l~~~~~~~~~~~I~~IilT 86 (262) T 3hnn_A 44 NSYVIEGDKT-AIIDPPV-----ESFMKIYLEALQQTVNLKKLDYVILG 86 (262) T ss_dssp EEEEEESSSE-EEECCCC-----HHHHHHHHHHHHHHSCGGGEEEEECS T ss_pred EEEEEECCCE-EEEECCC-----HHHHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 9999932999-9991897-----55799999999963784258899959 No 260 >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Probab=21.11 E-value=39 Score=13.80 Aligned_cols=184 Identities=15% Similarity=0.099 Sum_probs=88.2 Q ss_pred CHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECC-----CHHHHH Q ss_conf 99999999999999655339-970660155768866632224567124888999886652876885228-----899998 Q gi|254780669|r 56 SHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILTDVH-----TEQQCE 129 (301) Q Consensus 56 S~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~TeV~-----~~~~~e 129 (301) |.|+..++++.|.++|.+.. +| |.. ....+..+..+.--++-++.++.... ..+.+.-+-. +..++. T Consensus 22 ~~e~k~~i~~~L~~~Gvd~IEvG--f~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 94 (320) T 3dxi_A 22 NSKIVDAYILAMNELPIDYLEVG--YRN----KPSKEYMGKFGYTPVSVLKHLRNIST-KKIAIMLNEKNTTPEDLNHLL 94 (320) T ss_dssp CHHHHHHHHHHHHTTTCCEEEEE--ECC----SCCSSCCCHHHHCCHHHHHHHHHHCC-SEEEEEEEGGGCCGGGHHHHH T ss_pred CHHHHHHHHHHHHHCCCCEEEEC--CCC----CCHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHEE T ss_conf 99999999999997597989974--888----97546678761792899999986421-167887520001004355503 Q ss_pred -HHHHHCCEEEECHHHCCCH----HHHHHHHHCCCEEEEECCCC--CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH Q ss_conf -7650215788225762899----99999850597799836777--8999999999999725878089951465444010 Q gi|254780669|r 130 -AIADSVDILQIPALLCRQT----DLLTAAAQTGRVINVKKGQF--LSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNT 202 (301) Q Consensus 130 -~~~~~vDilQIgA~~~rqt----dLl~a~a~t~kpV~iKkgq~--~s~~e~~~a~eki~~~Gn~~i~lcERG~~fgy~~ 202 (301) .....+|.+++-. ...+- ++++.+.+.|..|.+-=-+. .+.++....+.+....|.+.|.+|.- +|+-+ T Consensus 95 ~~~~~~~~~ir~~~-~~~~i~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~d~i~l~DT---~G~~~ 170 (320) T 3dxi_A 95 LPIIGLVDMIRIAI-DPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCMVDS---FGGIT 170 (320) T ss_dssp GGGTTTCSEEEEEE-CGGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGGTTTCSEEEEECT---TSCCC T ss_pred CCCCCCEEEEEECC-CHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCC---CCCCC T ss_conf 05336753465313-056799999999999974987988532021100278999999999717999984685---45517 Q ss_pred HCCCC-CCCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 00000-010688851-871687117774212234532126388999999999971898899983698 Q gi|254780669|r 203 LVTDM-RSIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQD 267 (301) Q Consensus 203 lvvD~-~~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfiE~Hp~ 267 (301) - -++ +-+..+|+. ..|+=+- +| -++-+...-+.+|+.+|++- +++=-. T Consensus 171 P-~~v~~li~~~~~~~~i~i~~H-~H-------------n~~Gla~aN~laAl~~G~~~--iD~si~ 220 (320) T 3dxi_A 171 P-KEVKNLLKEVRKYTHVPVGFH-GH-------------DNLQLGLINSITAIDDGIDF--IDATIT 220 (320) T ss_dssp H-HHHHHHHHHHHHHCCSCEEEE-CB-------------CTTSCHHHHHHHHHHTTCSE--EEEBGG T ss_pred H-HHHHHHHHHHHCCCCEEEEEE-EC-------------CCCCHHHHHHHHHHHHCCCE--EEECCC T ss_conf 1-659999999874877059999-64-------------85256999999999849988--995776 No 261 >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* Probab=20.65 E-value=40 Score=13.74 Aligned_cols=159 Identities=9% Similarity=0.082 Sum_probs=85.7 Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE Q ss_conf 99706999548634999999999999999655339970660155768866632224567124888999886652876885 Q gi|254780669|r 41 NEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT 120 (301) Q Consensus 41 ~~~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~~~glpv~T 120 (301) ...+.+++.||..+=--..+-++|..+..... ..-.+- +.+.||--+ .+-|+...+..|+|+.. T Consensus 103 ~~~~vI~lvGptGvGKTTtiaKLAa~~~~~~~--~~v~li----------t~Dt~R~~A----~eQLk~~a~~l~vp~~~ 166 (296) T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFI----------TTDTYRIAA----VEQLKTYAELLQAPLEV 166 (296) T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEE----------ECCCSSTTH----HHHHHHHHTTTTCCCCB T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC--CCEEEE----------ECCCCCHHH----HHHHHHHHHHCCCCCCE T ss_conf 78888999899998889999999999999579--906999----------807997689----99999999741798504 Q ss_pred ECCCHHHHHHHH---HHCC--EEEECHHHCCCHHHHHHHHHCCC---E--EEEECCCCCCHHHHHHHHHHHHHCCCCCEE Q ss_conf 228899998765---0215--78822576289999999850597---7--998367778999999999999725878089 Q gi|254780669|r 121 DVHTEQQCEAIA---DSVD--ILQIPALLCRQTDLLTAAAQTGR---V--INVKKGQFLSPWEMHNILQKLHAHGAKDVL 190 (301) Q Consensus 121 eV~~~~~~e~~~---~~vD--ilQIgA~~~rqtdLl~a~a~t~k---p--V~iKkgq~~s~~e~~~a~eki~~~Gn~~i~ 190 (301) +.++.....+. +..| ++-.+.|+-++.+++.++.+.-. | +.+==.-....+++..+++.....+-..++ T Consensus 167 -~~~~~~l~~a~~~~~~~d~vlIDTaGr~~~~~~~~~eL~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~li 245 (296) T 2px0_A 167 -CYTKEEFQQAKELFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296) T ss_dssp -CSSHHHHHHHHHHGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE T ss_pred -EECHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEE T ss_conf -5556669999987224888999688843122217999999751316861699975787613599999996169998899 Q ss_pred EEECCCCCCCHHHCCCCCCCHHHHHHCCCEEE Q ss_conf 95146544401000000010688851871687 Q gi|254780669|r 191 FCERGTSFGYNTLVTDMRSIPIMTSMGVPVIF 222 (301) Q Consensus 191 lcERG~~fgy~~lvvD~~~i~~lk~~~~PVi~ 222 (301) +|-=--+-.++.+ +.++.++++||.+ T Consensus 246 lTKLDet~~~G~~------l~~~~~~~lpi~~ 271 (296) T 2px0_A 246 FTKIDETTSLGSV------FNILAESKIGVGF 271 (296) T ss_dssp EECTTTCSCCHHH------HHHHHTCSCCCSE T ss_pred EEEECCCCCHHHH------HHHHHHHCCCEEE T ss_conf 9811499957799------9999998949799 No 262 >2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Probab=20.61 E-value=40 Score=13.73 Aligned_cols=17 Identities=12% Similarity=0.421 Sum_probs=7.8 Q ss_pred HHHHHHHHCCEEEEECC Q ss_conf 99886652876885228 Q gi|254780669|r 107 FRDLKKKYGFPILTDVH 123 (301) Q Consensus 107 l~e~k~~~glpv~TeV~ 123 (301) ++...+.++.+++-=+. T Consensus 127 ~k~~Q~~~~~~v~i~ia 143 (432) T 2ip1_A 127 TKWLQEVFDVPLVIELT 143 (432) T ss_dssp HHHHHHHHTCCEEEEEC T ss_pred HHHHHHCCCCCEEEEEC T ss_conf 99999767985058972 No 263 >3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Probab=20.51 E-value=40 Score=13.72 Aligned_cols=17 Identities=12% Similarity=0.473 Sum_probs=6.8 Q ss_pred HHHHHHCCEEEEECCCH Q ss_conf 88665287688522889 Q gi|254780669|r 109 DLKKKYGFPILTDVHTE 125 (301) Q Consensus 109 e~k~~~glpv~TeV~~~ 125 (301) ...+.++.|++--+.+. T Consensus 101 ~~q~~~~~~v~i~iaD~ 117 (393) T 3hv0_A 101 YLQDTFKVPLVIQLTDD 117 (393) T ss_dssp HHHHHHCCCEEEEECHH T ss_pred HHHHCCCCCEEEEEECH T ss_conf 99876698779998456 No 264 >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Probab=20.43 E-value=40 Score=13.71 Aligned_cols=217 Identities=14% Similarity=0.143 Sum_probs=114.1 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCC-----CCCCCC-CCCCCCHHHHHHHHHHHHHH-CCE Q ss_conf 999548634999999999999999655339-9706601557688-----666322-24567124888999886652-876 Q gi|254780669|r 46 VLIAGPCQIESHDHAFMIAEKLYAICQSLN-IGLVYKSSFDKAN-----RSSLAG-KRGVGLKKGREIFRDLKKKY-GFP 117 (301) Q Consensus 46 ~iIAGPCsiES~e~~~~~A~~lk~~~~~~~-~~~ifK~sfdKan-----RtS~~s-frG~Gle~gL~il~e~k~~~-glp 117 (301) .+.||= -+.+...++++.+.+.|.++. +|.=|. -+.|- +++..+ -.|.-+++.+++++++++++ ..| T Consensus 22 y~taG~---P~~~~~~~~l~~l~~~GaD~iEiGiPfS--DP~aDGpvIq~a~~~al~~g~~~~~~~~~~~~~r~~~~~~p 96 (268) T 1qop_A 22 FVTLGD---PGIEQSLKIIDTLIDAGADALELGVPFS--DPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIP 96 (268) T ss_dssp EEETTS---SCHHHHHHHHHHHHHTTCSSEEEECCCS--CCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSC T ss_pred EEECCC---CCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 881707---9879999999999977999999789888--86544799999999999789867998767887653178877 Q ss_pred EEEE--------CCCHHHHHHHHHH-CCEEEECHHH-CCCHHHHHHHHHCCC-EEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 8852--------2889999876502-1578822576-289999999850597-799836777899999999999972587 Q gi|254780669|r 118 ILTD--------VHTEQQCEAIADS-VDILQIPALL-CRQTDLLTAAAQTGR-VINVKKGQFLSPWEMHNILQKLHAHGA 186 (301) Q Consensus 118 v~Te--------V~~~~~~e~~~~~-vDilQIgA~~-~rqtdLl~a~a~t~k-pV~iKkgq~~s~~e~~~a~eki~~~Gn 186 (301) ++-= --....++.+.+. +|-+=||--- -...++..++.+.+. +|.+=-+ .++++.+ +.+.+... T Consensus 97 lvlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlp~ee~~~~~~~~~~~~l~~I~lvaP--tt~~~ri---~~i~~~s~ 171 (268) T 1qop_A 97 IGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPP--NADDDLL---RQVASYGR 171 (268) T ss_dssp EEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECT--TCCHHHH---HHHHHHCC T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEC--CCCHHHH---HHHHHCCC T ss_conf 899985251123787899999997498666515888566699999997359826999826--8977889---99872598 Q ss_pred CCEEEE-ECCCCCCCHHHC-CCC-CCCHHHHHH-CCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE Q ss_conf 808995-146544401000-000-010688851-8716871177742122345321263889999999999718988999 Q gi|254780669|r 187 KDVLFC-ERGTSFGYNTLV-TDM-RSIPIMTSM-GVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFL 262 (301) Q Consensus 187 ~~i~lc-ERG~~fgy~~lv-vD~-~~i~~lk~~-~~PVi~D~SHs~q~p~~~~~~~gG~r~~v~~la~aa~a~G~dGlfi 262 (301) .=|.+. -.|+| |-.+.. .++ ..+..+|+. ..||++---=+ .+|- ++.++..|+||+.+ T Consensus 172 gFiY~vs~~GvT-G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~-------------~~e~----v~~~~~~~ADGvVV 233 (268) T 1qop_A 172 GYTYLLSRSGVT-GAENRGALPLHHLIEKLKEYHAAPALQGFGIS-------------SPEQ----VSAAVRAGAAGAIS 233 (268) T ss_dssp SCEEEESSSSCC-CSSSCC--CCHHHHHHHHHTTCCCEEEESSCC-------------SHHH----HHHHHHTTCSEEEE T ss_pred CEEEEEECCCCC-CCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC-------------CHHH----HHHHHHCCCCEEEE T ss_conf 647871034678-76543105689999999754688835761569-------------9999----99998638998998 Q ss_pred EECCCH--HHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 836983--347978201868899999999999 Q gi|254780669|r 263 ETHQDP--DNAPSDGPNMINIKDLPKLLSQLL 292 (301) Q Consensus 263 E~Hp~P--~~AlsD~~q~l~l~~l~~ll~~l~ 292 (301) =++--- ++...+..+ .++.+.+++++++ T Consensus 234 GSaiv~~i~~~~~~~~~--~~~~i~~~~~~lk 263 (268) T 1qop_A 234 GSAIVKIIEKNLASPKQ--MLAELRSFVSAMK 263 (268) T ss_dssp CHHHHHHHHHTTTCHHH--HHHHHHHHHHHHH T ss_pred CHHHHHHHHHCCCCHHH--HHHHHHHHHHHHH T ss_conf 88999999862416899--9999999999999 No 265 >4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1 Probab=20.40 E-value=40 Score=13.70 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=12.1 Q ss_pred HHHHHHHHCCCEEEEEEC Q ss_conf 999999718988999836 Q gi|254780669|r 248 LAKAAVAIGIAGIFLETH 265 (301) Q Consensus 248 la~aa~a~G~dGlfiE~H 265 (301) +..+.+..|++|+.+|.- T Consensus 237 ~l~~~~~~~~~giVl~g~ 254 (337) T 4pga_A 237 AYKALAQNGAKALIHAGT 254 (337) T ss_dssp HHHHHHHTTCSEEEEEEB T ss_pred HHHHHHHCCCCEEEEECC T ss_conf 999998779989999543 No 266 >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Probab=20.34 E-value=40 Score=13.69 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=74.8 Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HHCCE- Q ss_conf 7069995486349999999999999996553399706601557688666322245671248889998866----52876- Q gi|254780669|r 43 QRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKK----KYGFP- 117 (301) Q Consensus 43 ~~l~iIAGPCsiES~e~~~~~A~~lk~~~~~~~~~~ifK~sfdKanRtS~~sfrG~Gle~gL~il~e~k~----~~glp- 117 (301) ++++++.||..+- ++- ++ +. .+.. . +.|+ .+-.++++++++ -+|.+ T Consensus 18 ~~~l~~PGP~~~~-~~V-~~------am----~~~~-------------~-~hr~---~ef~~i~~~~r~~L~~ll~~~~ 68 (396) T 2ch1_A 18 EKIMMGPGPSNCS-KRV-LT------AM----TNTV-------------L-SNFH---AELFRTMDEVKDGLRYIFQTEN 68 (396) T ss_dssp CCBCCSSSSCCCC-HHH-HH------HT----TSCC-------------C-CTTC---HHHHHHHHHHHHHHHHHHTCCC T ss_pred CCCCEECCCCCCC-HHH-HH------HH----CCCC-------------C-CCCC---HHHHHHHHHHHHHHHHHHCCCC T ss_conf 6721008998898-999-99------73----7777-------------8-8788---9999999999999999958999 Q ss_pred ---EEEECCCHHHHHHHH-------HHCCEEEECHHHCCCHHHHHHHHHCCCEEEEEC---CCCCCHHHHHHHHHHHHHC Q ss_conf ---885228899998765-------021578822576289999999850597799836---7778999999999999725 Q gi|254780669|r 118 ---ILTDVHTEQQCEAIA-------DSVDILQIPALLCRQTDLLTAAAQTGRVINVKK---GQFLSPWEMHNILQKLHAH 184 (301) Q Consensus 118 ---v~TeV~~~~~~e~~~-------~~vDilQIgA~~~rqtdLl~a~a~t~kpV~iKk---gq~~s~~e~~~a~eki~~~ 184 (301) ++.-=..+.+.|.+. +.+.++.-|.|..+-.+.. .+.+..+.+-. +....+.+ ..+..... T Consensus 69 ~~~i~~~gsgT~a~ea~~~nl~~~~~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 142 (396) T 2ch1_A 69 RATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMS---ERYGADVRTIEGPPDRPFSLET---LARAIELH 142 (396) T ss_dssp SCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHH---HHTTCEEEEEECCTTSCCCHHH---HHHHHHHH T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH---HHHHHCCCCCCCCCCCCCCHHH---HHHHHHCC T ss_conf 71999878189999999985066788587741576420126788---8765124333455678889899---99775126 Q ss_pred CCCCEEEEECCCCCCCHHHCCCCCCCHHH-HHHCCCEEECHHHHH Q ss_conf 87808995146544401000000010688-851871687117774 Q gi|254780669|r 185 GAKDVLFCERGTSFGYNTLVTDMRSIPIM-TSMGVPVIFDASHSV 228 (301) Q Consensus 185 Gn~~i~lcERG~~fgy~~lvvD~~~i~~l-k~~~~PVi~D~SHs~ 228 (301) ...-+.+++=-++.|.. .|...+..+ |+.+.++++|++++. T Consensus 143 ~~~~v~~~~~~t~tg~~---~~i~~i~~~~k~~ga~~vvDavs~~ 184 (396) T 2ch1_A 143 QPKCLFLTHGDSSSGLL---QPLEGVGQICHQHDCLLIVDAVASL 184 (396) T ss_dssp CCSEEEEESEETTTTEE---CCCTTHHHHHHHTTCEEEEECTTTB T ss_pred CCEEEEEEEEEECCCCC---CCHHHHHHHHHHCCCEEEEECCCCC T ss_conf 86299999776057545---7489999999862981899711244 Done!