RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780669|ref|YP_003065082.1|
2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
asiaticus str. psy62]
(301 letters)
>gnl|CDD|179961 PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional.
Length = 264
Score = 474 bits (1223), Expect = e-134
Identities = 149/264 (56%), Positives = 193/264 (73%)
Query: 35 NQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAG 94
+ N+ F LIAGPC IES D A IAE L I L I V+K+SFDKANRSS+
Sbjct: 1 GDIEVGNDLPFFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHS 60
Query: 95 KRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAA 154
RG GL++G +I +++K+ +G P+LTDVH +Q +A+ VD+LQIPA LCRQTDLL AA
Sbjct: 61 FRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAA 120
Query: 155 AQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMT 214
A+TG+V+N+KKGQFL+PW+M N++ K+ G ++ CERGTSFGYN LV DMR +PIM
Sbjct: 121 AKTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMR 180
Query: 215 SMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSD 274
G PVIFDA+HSVQ PG G SGG+R+++ LA+AAVA+G+AG+F+ETH DPDNA SD
Sbjct: 181 ETGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSD 240
Query: 275 GPNMINIKDLPKLLSQLLAIDKII 298
GPNM+ + L LL QL AID ++
Sbjct: 241 GPNMLPLDKLEPLLEQLKAIDDLV 264
>gnl|CDD|130429 TIGR01362, KDO8P_synth, 3-deoxy-8-phosphooctulonate synthase. In
Gram-negative bacteria, this is the first step in the
biosynthesis of 3-deoxy-D-manno-octulosonate, part of
the oligosaccharide core of lipopolysaccharide.
Length = 258
Score = 397 bits (1021), Expect = e-111
Identities = 156/257 (60%), Positives = 201/257 (78%)
Query: 43 QRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKK 102
++F LIAGPC IES DHA +AEKL + L + ++KSSFDKANRSS+ RG GL++
Sbjct: 1 EKFFLIAGPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGPGLEE 60
Query: 103 GREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVIN 162
G +I + +K+++G PILTDVH QCE +A+ VDI+QIPA LCRQTDLL AAA+TGR++N
Sbjct: 61 GLKILQKVKEEFGVPILTDVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVN 120
Query: 163 VKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIF 222
VKKGQFLSPW+M N+++K+ + G K++L CERGTSFGYN LV DMRS+PIM +G PVIF
Sbjct: 121 VKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIF 180
Query: 223 DASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIK 282
DA+HSVQQPG G SGG R+++ LA+AAVA+GI G+F+ETH DP NA SDGPNM+ +
Sbjct: 181 DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLS 240
Query: 283 DLPKLLSQLLAIDKIIK 299
+L LL +LLAID + K
Sbjct: 241 ELEGLLEKLLAIDALTK 257
>gnl|CDD|171512 PRK12457, PRK12457, 2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional.
Length = 281
Score = 288 bits (738), Expect = 2e-78
Identities = 117/265 (44%), Positives = 171/265 (64%), Gaps = 2/265 (0%)
Query: 37 VTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKR 96
+T N+ FVL G +ES D + + + + L I V+K+SFDKANRSS+ R
Sbjct: 9 ITVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYR 68
Query: 97 GVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQ 156
GVGL +G IF ++K ++G P++TDVH +Q +A+ D+LQ+PA L RQTDL+ A A+
Sbjct: 69 GVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAK 128
Query: 157 TGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIM--T 214
TG+ +N+KK QF+SP +M +++ K G V+ CERG+SFGY+ LV DM M T
Sbjct: 129 TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRT 188
Query: 215 SMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSD 274
+ +PVIFD +HS+Q G SGG R+ ++ LA+A +A+G+AG+FLE H DPD A D
Sbjct: 189 TGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCD 248
Query: 275 GPNMINIKDLPKLLSQLLAIDKIIK 299
GP+ + + L LSQ+ A+D ++K
Sbjct: 249 GPSALPLDQLEPFLSQVKALDDLVK 273
>gnl|CDD|178601 PLN03033, PLN03033, 2-dehydro-3-deoxyphosphooctonate aldolase;
Provisional.
Length = 290
Score = 280 bits (718), Expect = 3e-76
Identities = 124/262 (47%), Positives = 169/262 (64%), Gaps = 5/262 (1%)
Query: 43 QRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKK 102
+ F L+AGP IES +H +A+ + I L + LV+KSSFDKANR+S RG G+ +
Sbjct: 15 EPFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAE 74
Query: 103 GREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVIN 162
G +I +K Y PI+TDVH QCEA+ DI+QIPA LCRQTDLL AAA+TG++IN
Sbjct: 75 GLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIIN 134
Query: 163 VKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIF 222
+KKGQF +P M N +K+ G +V+ CERGT FGYN L+ D R++ M PV+
Sbjct: 135 IKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 194
Query: 223 DASHSVQQPGIH-----GNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPN 277
D +HS+QQP G SGG R+ I +A+ AVA+G+ GIF+E H DP +AP DGP
Sbjct: 195 DITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPT 254
Query: 278 MINIKDLPKLLSQLLAIDKIIK 299
++ L +LL +L+AI ++ K
Sbjct: 255 QWPLRHLEELLEELIAIARVTK 276
>gnl|CDD|184028 PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate synthase;
Provisional.
Length = 266
Score = 130 bits (328), Expect = 5e-31
Identities = 76/269 (28%), Positives = 141/269 (52%), Gaps = 39/269 (14%)
Query: 42 EQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLK 101
+ ++IAGPC +ES + +AEKL + + G +K R+S +G+G +
Sbjct: 25 GEEKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKP------RTSPYSFQGLGEE 78
Query: 102 KGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVI 161
G +I +++ KY P++T+V + E +AD D+LQI + + +LL +T + I
Sbjct: 79 -GLKILKEVGDKYNLPVVTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPI 137
Query: 162 NVKKGQFLSPWEMHNILQK-LHA------HGAKDVLFCERGT----SFGYNTLVTDMRSI 210
+K+G M L++ L+A G ++V+ CERG ++ NTL D+ ++
Sbjct: 138 LLKRG-------MSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTL--DLAAV 188
Query: 211 PIMTSMG-VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPD 269
++ + +P+I D SH+ G R+ ++P+AKAA+A G G+ +E H +P+
Sbjct: 189 AVIKELSHLPIIVDPSHAT-----------GRRELVIPMAKAAIAAGADGLMIEVHPEPE 237
Query: 270 NAPSDGPNMINIKDLPKLLSQLLAIDKII 298
A SD +N +++ +L+ +L + K +
Sbjct: 238 KALSDARQTLNFEEMKELVDELKPMAKAL 266
>gnl|CDD|181535 PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase;
Reviewed.
Length = 335
Score = 128 bits (324), Expect = 2e-30
Identities = 83/267 (31%), Positives = 138/267 (51%), Gaps = 37/267 (13%)
Query: 44 RFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKG 103
+ V+IAGPC +ES + IA + + G +K R+S +G+G ++G
Sbjct: 93 KPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAFKP------RTSPYSFQGLG-EEG 145
Query: 104 REIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINV 163
++ + +++ G PI+T+V + E +A+ VDILQI A + DLL +T + + +
Sbjct: 146 LKLLAEAREETGLPIVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLL 205
Query: 164 KKG------QFLSPWEMHNILQKLHAHGAKDVLFCERGT----SFGYNTLVTDMRSIPIM 213
K+G ++L E IL A G +V+ CERG + NTL D+ ++P++
Sbjct: 206 KRGMSATIEEWLMAAEY--IL----AEGNPNVILCERGIRTFETATRNTL--DLSAVPVI 257
Query: 214 TSMG-VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAP 272
+ +PVI D SH+ G+R + PLA AAVA G G+ +E H DP+ A
Sbjct: 258 KKLTHLPVIVDPSHAT-----------GKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL 306
Query: 273 SDGPNMINIKDLPKLLSQLLAIDKIIK 299
SDGP + ++ +L+ +L AI + +
Sbjct: 307 SDGPQSLTPEEFEELMKKLRAIAEALG 333
>gnl|CDD|162318 TIGR01361, DAHP_synth_Bsub, phospho-2-dehydro-3-deoxyheptonate
aldolase. The member of this family from Synechocystis
PCC 6803, CcmA, was shown to be essential for
carboxysome formation. However, no other candidate for
this enzyme is present in that species, chorismate
biosynthesis does occur, other species having this
protein lack carboxysomes but appear to make chorismate,
and a requirement of CcmA for carboxysome formation does
not prohibit a role in chorismate biosynthesis.
Length = 260
Score = 128 bits (323), Expect = 2e-30
Identities = 75/263 (28%), Positives = 132/263 (50%), Gaps = 35/263 (13%)
Query: 42 EQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLK 101
E ++IAGPC +ES + A + + G +K R+S +G+G +
Sbjct: 23 EGSPIVIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKP------RTSPYSFQGLG-E 75
Query: 102 KGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVI 161
+G ++ R ++G P++T+V + E +A+ DILQI A + +LL + G+ +
Sbjct: 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPV 135
Query: 162 NVKKGQFLSPWEMHNILQK-LHA------HGAKDVLFCERGT-SFGYNTLVT-DMRSIPI 212
+K+G M N +++ L+A G +V+ CERG +F T T D+ ++P+
Sbjct: 136 LLKRG-------MGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPV 188
Query: 213 MTSMG-VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNA 271
+ +P+I D SH+ G R ++PLAKAA+A G G+ +E H DP+ A
Sbjct: 189 LKKETHLPIIVDPSHA-----------AGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKA 237
Query: 272 PSDGPNMINIKDLPKLLSQLLAI 294
SD + ++ +L+ +L A+
Sbjct: 238 LSDSKQQLTPEEFKRLVKELRAL 260
>gnl|CDD|172030 PRK13397, PRK13397, 3-deoxy-7-phosphoheptulonate synthase;
Provisional.
Length = 250
Score = 107 bits (269), Expect = 3e-24
Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 23/249 (9%)
Query: 47 LIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREI 106
I GPC IES+DH + A + + G YK R+S A +G+GL+ G
Sbjct: 18 FIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKP------RTSAASFQGLGLQ-GIRY 70
Query: 107 FRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKG 166
++ +++G ++++ +E+Q E D +D++Q+ A + + L + + I K+G
Sbjct: 71 LHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRG 130
Query: 167 QFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTL---VTDMRSIPIMTS-MGVPVIF 222
+ E L L G +++ CERG GY+ + D+ ++PI+ +P+I
Sbjct: 131 LMATIEEYLGALSYLQDTGKSNIILCERGVR-GYDVETRNMLDIMAVPIIQQKTDLPIIV 189
Query: 223 DASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIK 282
D SHS G R ++P AK A A+G GI +E H DPD+A SD I+ K
Sbjct: 190 DVSHST-----------GRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYK 238
Query: 283 DLPKLLSQL 291
L +L +L
Sbjct: 239 QLEQLGQEL 247
>gnl|CDD|183614 PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate
synthase/chorismate mutase; Reviewed.
Length = 360
Score = 101 bits (255), Expect = 2e-22
Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 33/266 (12%)
Query: 34 KNQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLA 93
K +V Q F I GPC +ES++ +A+ L A L G +K R+S
Sbjct: 110 KGEVIGDGNQSF--IFGPCSVESYEQVEAVAKALKAKGLKLLRGGAFKP------RTSPY 161
Query: 94 GKRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTA 153
+G+G++ G +I + + +YG +++++ E D VD++QI A + +LL A
Sbjct: 162 DFQGLGVE-GLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQIGARNMQNFELLKA 220
Query: 154 AAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGY-----NTLVTDMR 208
A + + + +K+G + E + + + G ++ CERG Y NTL D+
Sbjct: 221 AGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR-TYEKATRNTL--DIS 277
Query: 209 SIPIM---TSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETH 265
++PI+ T + PV+ D +HS G R ++P AKAA+AIG G+ E H
Sbjct: 278 AVPILKQETHL--PVMVDVTHS-----------TGRRDLLLPTAKAALAIGADGVMAEVH 324
Query: 266 QDPDNAPSDGPNMINIKDLPKLLSQL 291
DP A SD ++I + + L +L
Sbjct: 325 PDPAVALSDSAQQMDIPEFDRFLDEL 350
>gnl|CDD|184027 PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase;
Provisional.
Length = 352
Score = 83.3 bits (206), Expect = 7e-17
Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 34/273 (12%)
Query: 37 VTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKR 96
V F V++AGPC +E+ + A+++ A G YK R+S +
Sbjct: 94 VPFGENHPVVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQ 147
Query: 97 GVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQ 156
G G + E+ ++ G I+T+V E IA+ D++Q+ A + LL
Sbjct: 148 GHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGA 206
Query: 157 TGRVINVKKGQ--FLSPWEM--HNILQKLHAHGAKDVLFCERG-----TSFGYNTLVTDM 207
+ + +K+G + W M IL A G +V+ CERG + NTL D+
Sbjct: 207 QDKPVLLKRGMAATIDEWLMAAEYIL----AAGNPNVILCERGIRTFDRQYTRNTL--DL 260
Query: 208 RSIPIMTSMG-VPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQ 266
IP++ S+ +P++ D SH G+ +Y+ +A AA+A G + +E H
Sbjct: 261 SVIPVLRSLTHLPIMIDPSHGT-----------GKSEYVPSMAMAAIAAGTDSLMIEVHP 309
Query: 267 DPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIK 299
+P A SDGP + +L+ +L I K +
Sbjct: 310 NPAKALSDGPQSLTPDRFDRLMQELAVIGKTVG 342
>gnl|CDD|149647 pfam08660, Alg14, Oligosaccharide biosynthesis protein Alg14 like.
Alg14 is involved dolichol-linked oligosaccharide
biosynthesis and anchors the catalytic subunit Alg13 to
the ER membrane.
Length = 166
Score = 28.8 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 61 FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIF----RDLKKKY 114
F +A KL I +VY SF + SL+GK L + F +LKKKY
Sbjct: 103 FCLAAKLLKILGLKGTKIVYIESFARVKTLSLSGKL---LYPLADRFIVQWPELKKKY 157
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 27.5 bits (62), Expect = 3.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 226 HSVQQPGIHGNCSGGERQYIVPLAKAAVAIGI 257
H VQ PG SGG + PLAK A A+G+
Sbjct: 165 HRVQGPGD----SGGGAMLMDPLAKRAAALGV 192
>gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 256
Score = 27.4 bits (61), Expect = 4.3
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 103 GREIFRDLKKKYGFP-IL-------TDVHTEQQCEAIADSVDILQI--PALLCRQTDLLT 152
+E+ + ++ G+P IL T+ D ++ + LL Q
Sbjct: 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGF 142
Query: 153 AAAQTGRVINVKKGQFLSP 171
GR+IN+ GQF P
Sbjct: 143 DKKSGGRIINMTSGQFQGP 161
>gnl|CDD|149557 pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase. This
enzyme EC:2.7.4.7 is part of the Thiamine pyrophosphate
(TPP) synthesis pathway, TPP is an essential cofactor
for many enzymes.
Length = 246
Score = 27.1 bits (61), Expect = 6.4
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 143 LLCRQTDLLT-----AAAQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVL 190
L L+T A A TG I + +M +KL A GAK VL
Sbjct: 115 ELLPLATLITPNLPEAEALTGIKIK-------TLEDMKEAAKKLLALGAKAVL 160
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 26.6 bits (59), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 102 KGREIFRDLKKKYGFPILTDVHTEQQCEAIADSV 135
K E+ ++LKK Y I+T H QQ I+D
Sbjct: 184 KIEELIQELKKDYTIVIVT--HNMQQASRISDKT 215
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,897,431
Number of extensions: 308577
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 21
Length of query: 301
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 208
Effective length of database: 3,984,929
Effective search space: 828865232
Effective search space used: 828865232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)