RPSBLAST alignment of GI: 254780669 and protein with PDBid: 2qkf
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 kdops; 1.75A {Neisseria meningitidis serogroup B} PDB: 3fyo_A* 3fyp_A* 1phw_A* 1g7v_A* 1gg0_A 1phq_A* 1d9e_A* 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* Length = 280
Score = 145 bits (366), Expect = 9e-36
Identities = 116/267 (43%), Positives = 164/267 (61%), Gaps = 2/267 (0%)
Query: 35 NQVTFSNEQRFVLIAGPCQIESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAG 94
N +T N FVL G +ES D + + L I ++K+SFDKANRSS+
Sbjct: 6 NDITLGNNSPFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHS 65
Query: 95 KRGVGLKKGREIFRDLKKKYGFPILTDVHTEQQCEAIADSVDILQIPALLCRQTDLLTAA 154
RGVGL++G +IF +K ++G P++TDVH QC+ +A+ D++Q+PA L RQTDL+ A
Sbjct: 66 YRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLVVAM 125
Query: 155 AQTGRVINVKKGQFLSPWEMHNILQKLHAHGAKDVLFCERGTSFGYNTLVTDMRSIP--I 212
A+TG V+N+KK QFLSP +M NI++K H G ++ CERG+SFGY+ LV DM
Sbjct: 126 AKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSSFGYDNLVVDMLGFGVMK 185
Query: 213 MTSMGVPVIFDASHSVQQPGIHGNCSGGERQYIVPLAKAAVAIGIAGIFLETHQDPDNAP 272
T +PVIFD +HS+Q SGG R + LA A +A +AG+FLE+H DP A
Sbjct: 186 QTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPDPKLAK 245
Query: 273 SDGPNMINIKDLPKLLSQLLAIDKIIK 299
DGP+ + + L L ++ A+D +IK
Sbjct: 246 CDGPSALPLHLLEDFLIRIKALDDLIK 272