BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780669|ref|YP_003065082.1|
2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
asiaticus str. psy62]
         (301 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 301

 Score =  624 bits (1610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/301 (100%), Positives = 301/301 (100%)

Query: 1   MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHA 60
           MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHA
Sbjct: 1   MHILYPQNLEEKQRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQRFVLIAGPCQIESHDHA 60

Query: 61  FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT 120
           FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT
Sbjct: 61  FMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVGLKKGREIFRDLKKKYGFPILT 120

Query: 121 DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180
           DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK
Sbjct: 121 DVHTEQQCEAIADSVDILQIPALLCRQTDLLTAAAQTGRVINVKKGQFLSPWEMHNILQK 180

Query: 181 LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGG 240
           LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGG
Sbjct: 181 LHAHGAKDVLFCERGTSFGYNTLVTDMRSIPIMTSMGVPVIFDASHSVQQPGIHGNCSGG 240

Query: 241 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKP 300
           ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKP
Sbjct: 241 ERQYIVPLAKAAVAIGIAGIFLETHQDPDNAPSDGPNMINIKDLPKLLSQLLAIDKIIKP 300

Query: 301 L 301
           L
Sbjct: 301 L 301


>gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 175

 Score = 25.4 bits (54), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 114 YGFPILTDVHTEQQCEAIADSV 135
           YG P L D   +Q C  + DSV
Sbjct: 35  YGDPTLVDREIQQYCTNVIDSV 56


>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score = 23.9 bits (50), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 7/31 (22%)

Query: 275 GPNMINIKDLPKLLS-----QLLA--IDKII 298
           GPN I I+++P +LS     QLL   ID+II
Sbjct: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEII 521


>gi|254780847|ref|YP_003065260.1| hypothetical protein CLIBASIA_03710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 282

 Score = 22.7 bits (47), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 55  ESHDHAFMIAEKLYAICQSLNIGLV 79
           ESH+  F+  ++ YA+ + LNI +V
Sbjct: 94  ESHNIFFIGPQRDYALLEKLNIKIV 118


>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 266

 Score = 22.7 bits (47), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 23/109 (21%)

Query: 3   ILYPQNLEEK----QRRIDKNHMIHTNAAIHLGSGKNQVTFSNEQ------RFVLIAGPC 52
           I++  + EE     Q++ID   +IH N   HL   KNQ+   +++      R+ + + P 
Sbjct: 166 IVFSSDREEYIGLHQKQID---LIHQNIDRHLARMKNQLVAESDELEDILSRYSIESIPL 222

Query: 53  QI--ESHDHAFMIAEKLYAICQSLNIGLVYKSSFDKANRSSLAGKRGVG 99
            +   S D A      +Y + + ++ G        +  RS +A +  +G
Sbjct: 223 DLPEMSQDEAIKYINHVYLLGKWISRG--------EIQRSQIARREYIG 263


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,844
Number of Sequences: 1233
Number of extensions: 7959
Number of successful extensions: 21
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 5
length of query: 301
length of database: 328,796
effective HSP length: 73
effective length of query: 228
effective length of database: 238,787
effective search space: 54443436
effective search space used: 54443436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)