HHsearch alignment for GI: 254780670 and conserved domain: TIGR01928
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase; InterPro: IPR010197 This entry describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Also included are enzymes with the common name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase . Members are restricted to the are low GC Gram-positive bacteria and archaea. .
Probab=98.84 E-value=1e-06 Score=70.10 Aligned_cols=257 Identities=20% Similarity=0.311 Sum_probs=182.5
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 42999999848976766344786647754676268986516804899999998756789759885578988864653036
Q gi|254780670|r 18 PTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDG 97 (424)
Q Consensus 18 PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDg 97 (424)
T Consensus 22 ~~L~i~~~~~~G~~~fGE~~Af~~-------------p~Y~~Et~A~~~h~l~~~f~~~~~~k~f~~p~~~~~~~~~~~~ 88 (326)
T TIGR01928 22 DALIIELIDDKGVAGFGEVVAFQT-------------PWYTEETIATVLHILEDFFLPNILQKEFEHPSEVLELVRSLKG 88 (326)
T ss_pred CEEEEEEECCCCCCEEEEEECCCC-------------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 078888873688613334640378-------------8898762578899998764433215665788899999725588
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH-HCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf 643221232222024489987526634984888-2253245647543000003664556776610256514887748999
Q gi|254780670|r 98 TPNKSRLGANAILGVSLAVSKAAAQTSNLPLYK-YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176 (424)
Q Consensus 98 T~nks~lGaNailAvSlA~akA~A~~~~~pLy~-yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf~ea 176 (424)
T Consensus 89 ~~-------mA~A~Le~al~d~y~k~~~~~l~~G~~gk~rdk-~~~G~v----------------------~Gl~~~e~~ 138 (326)
T TIGR01928 89 TR-------MAKAGLEMALWDLYAKKKDKSLAEGFLGKLRDK-APAGVV----------------------VGLAKLEEM 138 (326)
T ss_pred CH-------HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCE-EECCEE----------------------EECCCHHHH
T ss_conf 77-------799999999998876427973113211123571-320178----------------------714765789
Q ss_pred HHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCCE
Q ss_conf 899999999999875200----0013676557644886846899999999997538531110234311046532027851
Q gi|254780670|r 177 IRMGAEVFHTLKKELKSK----GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKY 252 (424)
Q Consensus 177 l~~~~ev~~~lk~~L~~~----g~~t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~kY 252 (424)
T Consensus 139 lk~i-------e~~~~~g~~RIKlK--------i~Pq~~~--~L~----~~~~~~-FP---~i~L~~DA-------N~sy 186 (326)
T TIGR01928 139 LKEI-------ESLKKEGYKRIKLK--------ISPQIEV--DLV----KKVRKR-FP---DIPLVVDA-------NESY 186 (326)
T ss_pred HHHH-------HHHHHCCCEEEEEE--------ECCCCCH--HHH----HHHHHH-CC---CCEEEEEC-------CCCC
T ss_conf 9999-------99985698078875--------1688753--476----776763-79---72389733-------7788
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHHHHCCCCCEE
Q ss_conf 11146865687899999998765448699776763104237998864238836850430000214888521003865223
Q gi|254780670|r 253 ILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAI 332 (424)
Q Consensus 253 ~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~~gi~~~~~Nai 332 (424)
T Consensus 187 ~~---------~D~~~--Lk~Ld~~~l~~IE~Pf~~dDl~~l~~l~~~~~t--picLD-Es~~s~~~~~~l~eL~~~~v~ 252 (326)
T TIGR01928 187 EL---------KDIPR--LKELDRYDLLYIEEPFKADDLSELKELKKELLT--PICLD-ESITSLDDARKLIELGAVKVI 252 (326)
T ss_pred CC---------CCCHH--HHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC--CEECC-CCCCCHHHHHHHHCCCCCEEE
T ss_conf 85---------65657--655444062033278984226668777521788--63112-340368899898515773089
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 4254530038999999999998798699950
Q gi|254780670|r 333 LIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363 (424)
Q Consensus 333 liK~NQiGTvset~ea~~~a~~~g~~~ivSh 363 (424)
T Consensus 253 n~Kp~RlGGl~~~~k~~d~~k~h~~~vwiGg 283 (326)
T TIGR01928 253 NIKPGRLGGLTEALKAIDLCKEHGIKVWIGG 283 (326)
T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9545431516689999999987797699932