HHsearch alignment for GI: 254780670 and conserved domain: TIGR01928

>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase; InterPro: IPR010197 This entry describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Also included are enzymes with the common name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase . Members are restricted to the are low GC Gram-positive bacteria and archaea. .
Probab=98.84  E-value=1e-06  Score=70.10  Aligned_cols=257  Identities=20%  Similarity=0.311  Sum_probs=182.5

Q ss_pred             CEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             42999999848976766344786647754676268986516804899999998756789759885578988864653036
Q gi|254780670|r   18 PTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDG   97 (424)
Q Consensus        18 PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDg   97 (424)
T Consensus        22 ~~L~i~~~~~~G~~~fGE~~Af~~-------------p~Y~~Et~A~~~h~l~~~f~~~~~~k~f~~p~~~~~~~~~~~~   88 (326)
T TIGR01928        22 DALIIELIDDKGVAGFGEVVAFQT-------------PWYTEETIATVLHILEDFFLPNILQKEFEHPSEVLELVRSLKG   88 (326)
T ss_pred             CEEEEEEECCCCCCEEEEEECCCC-------------CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf             078888873688613334640378-------------8898762578899998764433215665788899999725588


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH-HCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHH
Q ss_conf             643221232222024489987526634984888-2253245647543000003664556776610256514887748999
Q gi|254780670|r   98 TPNKSRLGANAILGVSLAVSKAAAQTSNLPLYK-YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA  176 (424)
Q Consensus        98 T~nks~lGaNailAvSlA~akA~A~~~~~pLy~-yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf~ea  176 (424)
T Consensus        89 ~~-------mA~A~Le~al~d~y~k~~~~~l~~G~~gk~rdk-~~~G~v----------------------~Gl~~~e~~  138 (326)
T TIGR01928        89 TR-------MAKAGLEMALWDLYAKKKDKSLAEGFLGKLRDK-APAGVV----------------------VGLAKLEEM  138 (326)
T ss_pred             CH-------HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCE-EECCEE----------------------EECCCHHHH
T ss_conf             77-------799999999998876427973113211123571-320178----------------------714765789


Q ss_pred             HHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCCE
Q ss_conf             899999999999875200----0013676557644886846899999999997538531110234311046532027851
Q gi|254780670|r  177 IRMGAEVFHTLKKELKSK----GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKY  252 (424)
Q Consensus       177 l~~~~ev~~~lk~~L~~~----g~~t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~kY  252 (424)
T Consensus       139 lk~i-------e~~~~~g~~RIKlK--------i~Pq~~~--~L~----~~~~~~-FP---~i~L~~DA-------N~sy  186 (326)
T TIGR01928       139 LKEI-------ESLKKEGYKRIKLK--------ISPQIEV--DLV----KKVRKR-FP---DIPLVVDA-------NESY  186 (326)
T ss_pred             HHHH-------HHHHHCCCEEEEEE--------ECCCCCH--HHH----HHHHHH-CC---CCEEEEEC-------CCCC
T ss_conf             9999-------99985698078875--------1688753--476----776763-79---72389733-------7788


Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHHHHCCCCCEE
Q ss_conf             11146865687899999998765448699776763104237998864238836850430000214888521003865223
Q gi|254780670|r  253 ILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAI  332 (424)
Q Consensus       253 ~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~~gi~~~~~Nai  332 (424)
T Consensus       187 ~~---------~D~~~--Lk~Ld~~~l~~IE~Pf~~dDl~~l~~l~~~~~t--picLD-Es~~s~~~~~~l~eL~~~~v~  252 (326)
T TIGR01928       187 EL---------KDIPR--LKELDRYDLLYIEEPFKADDLSELKELKKELLT--PICLD-ESITSLDDARKLIELGAVKVI  252 (326)
T ss_pred             CC---------CCCHH--HHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCC--CEECC-CCCCCHHHHHHHHCCCCCEEE
T ss_conf             85---------65657--655444062033278984226668777521788--63112-340368899898515773089


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             4254530038999999999998798699950
Q gi|254780670|r  333 LIKPNQIGSVSETLNTIEKAQMAGYPSIISH  363 (424)
Q Consensus       333 liK~NQiGTvset~ea~~~a~~~g~~~ivSh  363 (424)
T Consensus       253 n~Kp~RlGGl~~~~k~~d~~k~h~~~vwiGg  283 (326)
T TIGR01928       253 NIKPGRLGGLTEALKAIDLCKEHGIKVWIGG  283 (326)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             9545431516689999999987797699932