HHsearch alignment for GI: 254780670 and conserved domain: TIGR03247
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=97.52 E-value=0.014 Score=39.64 Aligned_cols=280 Identities=15% Similarity=0.185 Sum_probs=160.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC---------CCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 51680489999999875678975988557898886465303664322---------123222202448998752663498
Q gi|254780670|r 56 RYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKS---------RLGANAILGVSLAVSKAAAQTSNL 126 (424)
Q Consensus 56 ~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT~nks---------~lGaNailAvSlA~akA~A~~~~~ 126 (424)
T Consensus 51 ~~Gg~~~~~~L~----~~~~~vvG~~v~~~~~i~~~v~~~~~~~~~~g~g~~t~dlr~~~~a~sAiE~A~lDl~GK~lg~ 126 (441)
T TIGR03247 51 VPGGEKIRATLE----DARPLVVGKPLGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGV 126 (441)
T ss_pred CCCCHHHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 889789999999----9788856897789999999999873577866777531000013465899999999862003288
Q ss_pred CHHHHCC-CCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCH-----HHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 4888225-3245647543000003664556776610256514887748-----999899999999999875200-00136
Q gi|254780670|r 127 PLYKYLG-GCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENI-----REAIRMGAEVFHTLKKELKSK-GYSTN 199 (424)
Q Consensus 127 pLy~yl~-~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf-----~eal~~~~ev~~~lk~~L~~~-g~~t~ 199 (424)
T Consensus 127 PV~~LLG~G~~RD~V~~~aYLFy~gd-~~~t~~~y~---~~~~~~d~W~~~r~~ealt--pe~iv~~A~a~~~~yGF~~- 199 (441)
T TIGR03247 127 PVAALLGEGQQRDEVEMLGYLFFIGD-RKRTSLPYR---SGPQDDDDWFRLRHEEALT--PEAVVRLAEAAYDRYGFRD- 199 (441)
T ss_pred CHHHHHCCCCCCCCEEEEEEEEEECC-CCCCCCCCC---CCCCCCCHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCE-
T ss_conf 69998478842251046773214047-656788867---7987631266652001289--9999999999887418600-
Q ss_pred CCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 765576-4488684689999999999753853111023431104653202785111146865687899999998765448
Q gi|254780670|r 200 VGDEGG-FSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYP 278 (424)
Q Consensus 200 vgDEGG-fap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yP 278 (424)
T Consensus 200 ~KLKgGV~~~~e-E-i~~v~AL~eafP~--------~~lrlD----------------PNgaWs~~~Airl~r~l-~~~- 251 (441)
T TIGR03247 200 FKLKGGVLRGEE-E-IEAVTALAKRFPQ--------ARITLD----------------PNGAWSLDEAIALCKDL-KGV- 251 (441)
T ss_pred EEECCCCCCHHH-H-HHHHHHHHHHCCC--------CCEEEC----------------CCCCCCHHHHHHHHHHH-HCC-
T ss_conf 441478888188-9-9999999986899--------866257----------------99886889999999972-340-
Q ss_pred EEEEECCCCCCC-HHH---HHHHHHHCCCCEEEECCCEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 699776763104-237---9988642388368504300002148885210038652234254530038999999999998
Q gi|254780670|r 279 IYSIEDGMSEDD-WHG---WKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQM 354 (424)
Q Consensus 279 I~sIEDP~~e~D-~~g---w~~l~~~~g~~~~IvGDDL~vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~ 354 (424)
T Consensus 252 l~Y~EDP~~~e~g~~gre~MAe~r~~t~--i-PlATNm~~t~~~~~~~ai~~~AVdIvLaDpHfW-g~~~s~~vA~~C~~ 327 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATG--L-PTATNMIATDWRQMGHALQLQAVDIPLADPHFW-TMQGSVRVAQMCHD 327 (441)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHCCC--C-CCCCCEEEECHHHHHHHHHHCCCCEECCCCCHH-HHHHHHHHHHHHHH
T ss_conf 5565188754467226899999985389--8-730231650589978999708873772687502-15778999999998
Q ss_pred CCCEEEEECCCCCCCHHH--HHHHHHH
Q ss_conf 798699950788872358--9989998
Q gi|254780670|r 355 AGYPSIISHRSGETEDHT--IADLAVA 379 (424)
Q Consensus 355 ~g~~~ivShRSGETeD~~--iaDLAVg 379 (424)
T Consensus 328 ~gl-~~~~HSn~hlgISLAam~HvaAa 353 (441)
T TIGR03247 328 WGL-TWGSHSNNHFDISLAMFTHVAAA 353 (441)
T ss_pred HCC-CEECCCCCCCCHHHHHHHHHHHC
T ss_conf 398-63523577423999999987422