HHsearch alignment for GI: 254780670 and conserved domain: cd03319
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.61 E-value=3.4e-12 Score=110.65 Aligned_cols=286 Identities=23% Similarity=0.319 Sum_probs=188.5
Q ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEEC-CCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 86886079784299999984897676634-47866477546762689865168048999999987567897598855789
Q gi|254780670|r 8 AREVIDSRGSPTIEVDVCLEDGSTGRAMV-PSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQL 86 (424)
Q Consensus 8 ~r~IlDSRG~PTvEvev~~~~g~~gra~~-PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~ 86 (424)
T Consensus 18 s~g~~~~r--~~~lV~v~~-dG~~G~GE~~p~~----------------~~~get~~~~~~~l~~-~~~~l~g~~~~~~~ 77 (316)
T cd03319 18 ARGSRTEA--ENVIVEIEL-DGITGYGEAAPTP----------------RVTGETVESVLAALKS-VRPALIGGDPRLEK 77 (316)
T ss_pred CCEEEEEE--EEEEEEEEE-CCEEEEEECCCCC----------------CCCCCCHHHHHHHHHH-HHHHHCCCCCCHHH
T ss_conf 69999997--899999999-9989999725788----------------8662589999999999-78986589977499
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 88864653036643221232222024489987526634984888225324564754300000366455677661025651
Q gi|254780670|r 87 LIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIM 166 (424)
Q Consensus 87 ~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmIi 166 (424)
T Consensus 78 ~~~~~~~~~~~-------~~~a~said~AlwDl~gk~~~~pl~~llGg~~~~~i~~--~~~~------------------ 130 (316)
T cd03319 78 LLEALQELLPG-------NGAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLET--DYTI------------------ 130 (316)
T ss_pred HHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEE--EEEC------------------
T ss_conf 99999863568-------77999999999999976064997789637777877404--6506------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHH
Q ss_conf 4887748999899999999999875200001---3676557644886846899999999997538531110234311046
Q gi|254780670|r 167 PVGAENIREAIRMGAEVFHTLKKELKSKGYS---TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAA 243 (424)
Q Consensus 167 P~g~~sf~eal~~~~ev~~~lk~~L~~~g~~---t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AA 243 (424)
T Consensus 131 --~~~~~e~~~-------~~~~~~~-~~G~~~~KiKvg~---------~~~~d~~~v-~~vr~~-~--~-~~~l~vDa-- 184 (316)
T cd03319 131 --SIDTPEAMA-------AAAKKAA-KRGFPLLKIKLGG---------DLEDDIERI-RAIREA-A--P-DARLRVDA-- 184 (316)
T ss_pred --CCCCHHHHH-------HHHHHHH-HCCCCEEEEECCC---------CHHHHHHHH-HHHHHH-C--C-CCEEEEEC--
T ss_conf --899999999-------9999999-7598768632489---------979999999-999966-8--9-96299846--
Q ss_pred HHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHH
Q ss_conf 53202785111146865687899999998765448699776763104237998864238836850430000214888521
Q gi|254780670|r 244 SAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKG 323 (424)
Q Consensus 244 sefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~~g 323 (424)
T Consensus 185 -----N---------~~~~~~~A~~~~~~-l~~~~i~~iEqP~~~~d~~~~~~l~~~~~--~pIa~dEs~~-~~~d~~~~ 246 (316)
T cd03319 185 -----N---------QGWTPEEAVELLRE-LAELGVELIEQPVPAGDDDGLAYLRDKSP--LPIMADESCF-SAADAARL 246 (316)
T ss_pred -----C---------CCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHCC--CCEEECCCCC-CHHHHHHH
T ss_conf -----8---------88899999999997-52443444308989999999999999689--9999358879-99999999
Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH--HHHHHHHHCCCHHE
Q ss_conf 0038652234254530038999999999998798699950788872358--99899981998010
Q gi|254780670|r 324 INEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHT--IADLAVATNCGQIK 386 (424)
Q Consensus 324 i~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~--iaDLAVg~~a~~iK 386 (424)
T Consensus 247 ~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~g~~~-es~i~~aA~~hlaaa~-~~f~d 309 (316)
T cd03319 247 AGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMV-ESSLSIAAAAHLAAAK-ADFVD 309 (316)
T ss_pred HHCCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHHHCC-CCEEE
T ss_conf 976998869845144089899999999999869949981885-4699999999998308-99896