HHsearch results for GI: 254780670 and protein with PDBid: 1sjd_A
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=99.69 E-value=7.2e-14 Score=121.46 Aligned_cols=294 Identities=19% Similarity=0.231 Sum_probs=197.2
Q ss_pred CEEEEEEEEEE--------EECCC----CCEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 91058998688--------60797----8429999998489767663447866477546762689865168048999999
Q gi|254780670|r 1 MFINDIIAREV--------IDSRG----SPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAF 68 (424)
Q Consensus 1 m~I~~i~~r~I--------lDSRG----~PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~ 68 (424)
|+|++|..+.+ -.|+| +.+|-|+|.+++| .|.+-+.+-.. +.|.+.....+...
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~v~V~i~~~~g-~G~GE~~~~~~-------------~~~~~~~~~~~~~~ 66 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAG-------------PLYSSEYNDGAEHV 66 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSS-------------SSSSSCBHHHHHHH
T ss_pred CEEEEEEEEEEEECCCCCEECCCEEEEEEEEEEEEEEECCC-EEEEEEECCCC-------------CCCCCCCHHHHHHH
T ss_conf 98709999999822568867777589998999999997992-89998506788-------------75373419999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEEC
Q ss_conf 98756789759885578988864653036643221232222024489987526634984888225324564754300000
Q gi|254780670|r 69 VNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNIL 148 (424)
Q Consensus 69 in~~i~~~L~g~~~~dQ~~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~Nii 148 (424)
+...+.+.+++.++.+...+...+-.+.+ ..-+..|+.+|++-+.++..++|||++|++.. ..+|+. ..+
T Consensus 67 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~a~~aid~Al~Dl~~k~~~~pl~~llG~~~-~~i~~~--~~~ 136 (368)
T 1sjd_A 67 LRHYLIPALLAAEDITAAKVTPLLAKFKG-------HRMAKGALEMAVLDAELRAHERSFAAELGSVR-DSVPCG--VSV 136 (368)
T ss_dssp HHHTHHHHHHHSSSCCHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCC-SEEEBE--EEE
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC-CCEEEE--EEC
T ss_conf 99864055327983357887655331255-------57999999998876752413673156279975-643577--740
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 36645567766102565148877489998999999999998752000013-67655764488684689999999999753
Q gi|254780670|r 149 NGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYST-NVGDEGGFSPNLKTADSALDLIANSIEKA 227 (424)
Q Consensus 149 nGG~HA~~~l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t-~vgDEGGfap~~~~~eeaL~ll~eAi~~a 227 (424)
.-+ .+..+..+. +++.. .+|+.+ .+.- .|.. ..+.+..+.+++
T Consensus 137 ~~~-------------------~~~~~~~~~-------~~~~~-~~gf~~~K~k~----~~~~--d~~~i~~ir~~~--- 180 (368)
T 1sjd_A 137 GIM-------------------DTIPQLLDV-------VGGYL-DEGYVRIKLKI----EPGW--DVEPVRAVRERF--- 180 (368)
T ss_dssp CCC-------------------SCHHHHHHH-------HHHHH-HHTCSEEEEEC----BTTB--SHHHHHHHHHHH---
T ss_pred CCC-------------------CCHHHHHHH-------HHHHH-HCCCCEECCCC----CCHH--HHHHHHHHHHHC---
T ss_conf 468-------------------999999999-------99998-67983631578----8566--899999999862---
Q ss_pred CCCCCCCHHHHHCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf 85311102343110465320278511114686568789999999876544869977676310423799886423883685
Q gi|254780670|r 228 GYNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQL 307 (424)
Q Consensus 228 Gy~~g~di~i~lD~AAsefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~I 307 (424)
|.++.|.+|+ ++. .+.++-+.+ .+| .+|.|.++|+|+..+|+++..++.++.+ +-|
T Consensus 181 ----g~~~~l~vDa-------N~~---------~~~~~a~~~-~~l-~~~~i~~iEeP~~~~~~~~~~~l~~~~~--ipi 236 (368)
T 1sjd_A 181 ----GDDVLLQVDA-------NTA---------YTLGDAPQL-ARL-DPFGLLLIEQPLEEEDVLGHAELARRIQ--TPI 236 (368)
T ss_dssp ----CTTSEEEEEC-------TTC---------CCGGGHHHH-HTT-GGGCCSEEECCSCTTCHHHHHHHHTTCS--SCE
T ss_pred ----CCCCEEEEEC-------CCC---------CCHHHHHHH-HHC-CCCCCCEEEEECCCCCHHHHHHHHHCCC--CCC
T ss_conf ----7664589706-------756---------599999999-732-3148854788548678899998876169--986
Q ss_pred ECCCEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 0430000214888521003865223425453003899999999999879869995078887235899899981
Q gi|254780670|r 308 VGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVAT 380 (424)
Q Consensus 308 vGDDL~vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~iaDLAVg~ 380 (424)
..|.-.. ++.-+.+.++.++++.+.+||..+|.+|++++.+.+|+++|..++++ .+.|+.=...|-+.++.
T Consensus 237 a~dE~~~-~~~~~~~~~~~~~~d~~~~~~~~~GGi~~~~~i~~~a~~~gi~~~~~-~~~~~~i~~~a~~~laa 307 (368)
T 1sjd_A 237 CLDESIV-SARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCG-GMIETGLGRAANVALAS 307 (368)
T ss_dssp EESTTCC-SHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEEC-CCCCCHHHHHHHHHHHT
T ss_pred CCCCCCC-CHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf 6884144-43658999971998879964577787499999999999879959878-97532999999999996