HHsearch results for GI: 254780670 and protein with PDBid: 3cyj_A
>3cyj_A Mandelate racemase/muconate lactonizing enzyme- like protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941}
Probab=99.65 E-value=1.9e-13 Score=118.41 Aligned_cols=283 Identities=16% Similarity=0.139 Sum_probs=180.7
Q ss_pred EEEECCCC----CEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 88607978----42999999848976766344786647754676268986516804899999998756789759885578
Q gi|254780670|r 10 EVIDSRGS----PTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQ 85 (424)
Q Consensus 10 ~IlDSRG~----PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ 85 (424)
-+-+|+|. +.|-|++.+ +|..|.+-++.+. .+. ..+++.++|.|+|+|+.+.
T Consensus 23 P~~~~~~~~~~~~~v~v~i~~-dG~~G~GE~~~~~--------------------~~~---~~i~~~l~p~l~G~d~~~~ 78 (372)
T 3cyj_A 23 PESDGTLQWDSTTMILVEAHG-GGRKGLGYTYGDV--------------------SVG---RFVESKLAGVAEGSDALSP 78 (372)
T ss_dssp EEEETTEEEEEEEEEEEEEEE-TTEEEEEEEESCT--------------------HHH---HHHHHHTHHHHTTSBTTCH
T ss_pred CEECCCCEEEEEEEEEEEEEE-CCEEEEEEEECHH--------------------HHH---HHHHHHHHHHHCCCCCCCH
T ss_conf 862556179778999999994-8929999987878--------------------999---9999999999769996799
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEE
Q ss_conf 98886465303664322123222202448998752663498488822532456475430000036645567766102565
Q gi|254780670|r 86 LLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMI 165 (424)
Q Consensus 86 ~~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~l~iQEfmI 165 (424)
..+-+.|....-......+...|+-|+.+|++-+.++..++|||+.|++.. ..+|+.......+
T Consensus 79 ~~i~~~l~~~~~~~g~~g~~~~A~said~AlwDl~gK~~~~Pv~~LLGg~~-~~i~~y~~~~~~~--------------- 142 (372)
T 3cyj_A 79 PAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFH-AEVPVYGSGGFTS--------------- 142 (372)
T ss_dssp HHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCC-SSEEEEEECCCTT---------------
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCC-CCEEEECCCCCCC---------------
T ss_conf 999999999887516752789999999999999987665997254157644-4222101356678---------------
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHH
Q ss_conf 148877489998999999999998752000013---67655764488684689999999999753853111023431104
Q gi|254780670|r 166 MPVGAENIREAIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCA 242 (424)
Q Consensus 166 iP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~A 242 (424)
.+-.+.. ..++... ++|+.+ .+|. ..+...+.++.+.++ .|.++.|.+|+.
T Consensus 143 -----~~~~~~~-------~~~~~~~-~~Gf~~~K~k~g~------~~~~d~~~i~~ir~~-------~g~~~~l~vDaN 196 (372)
T 3cyj_A 143 -----YPLRRLQ-------EQLGGWA-AAGIPRVKMKVGR------EPEKDPERVRAAREA-------IGESVELMVDAN 196 (372)
T ss_dssp -----SCHHHHH-------HHHHHHH-HTTCCEEEEECCS------SGGGHHHHHHHHHHH-------HCTTSEEEEECT
T ss_pred -----CCHHHHH-------HHHHHHH-HHCCCCCCCCCCC------CCHHHHHHHHHHHHH-------HCCCCEEEEECC
T ss_conf -----7678999-------9999999-7266642344467------806789999999998-------298946986053
Q ss_pred HHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCHHHHHH
Q ss_conf 65320278511114686568789999999876544869977676310423799886423883685043000021488852
Q gi|254780670|r 243 ASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHK 322 (424)
Q Consensus 243 Asefy~~~kY~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~vTn~~rl~~ 322 (424)
..++.++-+.+...+.++|++.++|||+..+|+++.++|.++..-.+- ++.+....+....
T Consensus 197 ----------------~~~~~~~A~~~~~~~l~~~~l~~~EeP~~~~d~~~~~~l~~~~~~~i~-~~e~~~~~~~~~~-- 257 (372)
T 3cyj_A 197 ----------------GAYTRKQALYWAGAFAREAGISYLEEPVSSEDREGLRLLRDRGPGGVA-IAAGEYEWTLPQL-- 257 (372)
T ss_dssp ----------------TCSCHHHHHHHHHHHHHHHCCCEEECSSCTTCHHHHHHHHHHSCTTCE-EEECTTCCSHHHH--
T ss_pred ----------------CCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHH--
T ss_conf ----------------445889999988654203203324689981029999999985678753-2156521445899--
Q ss_pred HHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 100386522342545300389999999999987986999507888723589989998199
Q gi|254780670|r 323 GINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNC 382 (424)
Q Consensus 323 gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~iaDLAVg~~a 382 (424)
.+..++++.+-+|+..+|-+|+++..+.+|+.+|..++. |-+ -..-++|+.++..
T Consensus 258 ~~~~~~~d~~~~d~~~~GGit~~~ki~~~a~~~gi~v~~-h~~----~~a~~hl~~a~~~ 312 (372)
T 3cyj_A 258 HDLAGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSA-HCA----PAVSAHACCAVES 312 (372)
T ss_dssp HHHHTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEE-CSC----HHHHHHHGGGCTT
T ss_pred HHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEE-CCH----HHHHHHHHHHHHC
T ss_conf 998072300003861269878999999999985996985-679----9999999998631