HHsearch results for GI: 254780670 and protein with PDBid: 3mkc_A
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=99.69 E-value=1.3e-15 Score=134.41 Aligned_cols=318 Identities=18% Similarity=0.182 Sum_probs=201.0
Q ss_pred EEEEEEEEE---EEECCCCCEEEEEEEECCCCEEEEECCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 105899868---86079784299999984897676634478-66477546762689865168048999999987567897
Q gi|254780670|r 2 FINDIIARE---VIDSRGSPTIEVDVCLEDGSTGRAMVPSG-ASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTAL 77 (424)
Q Consensus 2 ~I~~i~~r~---IlDSRG~PTvEvev~~~~g~~gra~~PSG-aStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L 77 (424)
.|++|..-. -.......+|=|+|++++|.+|.+-++.. .....++.++ .-.+ +.+.+.|.|
T Consensus 11 ~i~~i~~~~~~~~~~~~~~~~vlV~i~t~~G~~G~GE~~~~~~~~~~~~~~~---~~~~------------~~~~l~~~l 75 (394)
T 3mkc_A 11 PIKSIEFIPVNYQASNWSQNTVVVKVTDENGVYGLGEADGSPDAILAYANIE---TEHK------------WLTNITEKA 75 (394)
T ss_dssp CEEEEEEEEEEEC----CEEEEEEEEEETTSCEEEEEECSCHHHHHHHHTCC---CCBT------------TBCCTTTTT
T ss_pred CCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEECCHH---HHHH------------HHHHHHHHH
T ss_conf 8306889981688888876779999998999989975048887621300099---9999------------999999985
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 59885578988864653036643221232222024489987526634984888225324564754300000366455677
Q gi|254780670|r 78 LGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNA 157 (424)
Q Consensus 78 ~g~~~~dQ~~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~ 157 (424)
+|+++.+...+-+.|...........+...++.|+.+|++-+.++..++|||++|++.... .+|...-++++....
T Consensus 76 iG~~~~~i~~~~~~l~~~~~~~~~~g~~~~a~said~AlwDl~gK~~g~Pl~~LLgg~~r~--~i~~y~s~~~~~~~~-- 151 (394)
T 3mkc_A 76 IGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKD--KVHPYLTLYPAIPVD-- 151 (394)
T ss_dssp TTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCS--EECCEEECCCSCC-C--
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC--CCCEEEEEECCCCHH--
T ss_conf 6998136999999999731002775358899999999999999877099888855886677--761489974267403--
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66102565148877489998999999999998752000013---676557644886846899999999997538531110
Q gi|254780670|r 158 LDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234 (424)
Q Consensus 158 l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~d 234 (424)
.. +....+-+..+.+..+..++.. ...-.+ .. +.++.++.+.+.-+.. |.+
T Consensus 152 -------------~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~-~~~~~~~~v~~ir~~~----g~~ 205 (394)
T 3mkc_A 152 -------------AS----LDVAIKGYAPLLEKAKAHNIRAVKVCVPIKA----DW-STKEVAYYLRELRGIL----GHD 205 (394)
T ss_dssp -------------CC----HHHHHHHHHHHHHHHHHTTCSEEEEECCTTC----CC-CHHHHHHHHHHHHHHH----CSS
T ss_pred -------------HH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CC-CHHHHHHHHHHHHHHH----CCC
T ss_conf -------------44----5666655799999976517253324577667----75-6789999999999872----986
Q ss_pred HHHHHCHHHHHHCCCCCEEECCCCCCCC-HHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEE
Q ss_conf 2343110465320278511114686568-789999999876544869977676310423799886423883685043000
Q gi|254780670|r 235 LLIALDCAASAFFKKEKYILKGENLELQ-PNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLF 313 (424)
Q Consensus 235 i~i~lD~AAsefy~~~kY~~~~~~~~~t-~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~ 313 (424)
+.+.+|+. + .++ .++-+.+. +.+++|++.++|+|+..+|++++.++..+.+ +.|.+|.-
T Consensus 206 ~~l~vDaN-------~---------~~~~~~~a~~~~-~~l~~~~~~~~EeP~~~~~~~~~~~l~~~~~--ipIa~~E~- 265 (394)
T 3mkc_A 206 TDMMVDYL-------Y---------RFTDWYEVARLL-NSIEDLELYFAEATLQHDDLSGHAKLVENTR--SRICGAEM- 265 (394)
T ss_dssp SEEEEECT-------T---------CCCCHHHHHHHH-HHTGGGCCSEEESCSCTTCHHHHHHHHHHCS--SCBEECTT-
T ss_pred CCCHHHHH-------C---------CCCCHHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCEEEEHH-
T ss_conf 13101322-------1---------665322322455-5553027764257766579899987633689--86784023-
Q ss_pred ECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH--HHHHHHHCC-CHHE
Q ss_conf 021488852100386522342545300389999999999987986999507888723589--989998199-8010
Q gi|254780670|r 314 VTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTI--ADLAVATNC-GQIK 386 (424)
Q Consensus 314 vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~i--aDLAVg~~a-~~iK 386 (424)
.+.+..+++.++.++++.+.+|++.+|-++++++.+++|+.+|..++ .|-. ++.=.+. .|||.+++. .++-
T Consensus 266 ~~~~~~~~~~i~~~~~di~~~d~~~~GGi~~~~~ia~~a~~~gi~v~-~h~~-~~~i~~~a~~hlaaa~~~~~~~e 339 (394)
T 3mkc_A 266 STTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATANNVQVM-PHNW-KTGITSAAAIHYQFAVGNAPYFE 339 (394)
T ss_dssp CCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEEC-CCCC-SCHHHHHHHHHHHHHTCCSSCCE
T ss_pred HHHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHCCCEEE-ECCC-CCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 32246778888717401143155426978999999999998799797-5799-96799999999999688987267