HHsearch results for GI: 254780670 and protein with PDBid: 3mkc_A

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=99.69  E-value=1.3e-15  Score=134.41  Aligned_cols=318  Identities=18%  Similarity=0.182  Sum_probs=201.0

Q ss_pred             EEEEEEEEE---EEECCCCCEEEEEEEECCCCEEEEECCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             105899868---86079784299999984897676634478-66477546762689865168048999999987567897
Q gi|254780670|r    2 FINDIIARE---VIDSRGSPTIEVDVCLEDGSTGRAMVPSG-ASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTAL   77 (424)
Q Consensus         2 ~I~~i~~r~---IlDSRG~PTvEvev~~~~g~~gra~~PSG-aStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L   77 (424)
                      .|++|..-.   -.......+|=|+|++++|.+|.+-++.. .....++.++   .-.+            +.+.+.|.|
T Consensus        11 ~i~~i~~~~~~~~~~~~~~~~vlV~i~t~~G~~G~GE~~~~~~~~~~~~~~~---~~~~------------~~~~l~~~l   75 (394)
T 3mkc_A           11 PIKSIEFIPVNYQASNWSQNTVVVKVTDENGVYGLGEADGSPDAILAYANIE---TEHK------------WLTNITEKA   75 (394)
T ss_dssp             CEEEEEEEEEEEC----CEEEEEEEEEETTSCEEEEEECSCHHHHHHHHTCC---CCBT------------TBCCTTTTT
T ss_pred             CCCEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEECCHH---HHHH------------HHHHHHHHH
T ss_conf             8306889981688888876779999998999989975048887621300099---9999------------999999985


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             59885578988864653036643221232222024489987526634984888225324564754300000366455677
Q gi|254780670|r   78 LGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNA  157 (424)
Q Consensus        78 ~g~~~~dQ~~iD~~Li~lDgT~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~lP~P~~NiinGG~HA~~~  157 (424)
                      +|+++.+...+-+.|...........+...++.|+.+|++-+.++..++|||++|++....  .+|...-++++....  
T Consensus        76 iG~~~~~i~~~~~~l~~~~~~~~~~g~~~~a~said~AlwDl~gK~~g~Pl~~LLgg~~r~--~i~~y~s~~~~~~~~--  151 (394)
T 3mkc_A           76 IGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKD--KVHPYLTLYPAIPVD--  151 (394)
T ss_dssp             TTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCS--EECCEEECCCSCC-C--
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC--CCCEEEEEECCCCHH--
T ss_conf             6998136999999999731002775358899999999999999877099888855886677--761489974267403--


Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66102565148877489998999999999998752000013---676557644886846899999999997538531110
Q gi|254780670|r  158 LDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYST---NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD  234 (424)
Q Consensus       158 l~iQEfmIiP~g~~sf~eal~~~~ev~~~lk~~L~~~g~~t---~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~d  234 (424)
                                   ..    +....+-+..+.+..+..++..   ...-.+    .. +.++.++.+.+.-+..    |.+
T Consensus       152 -------------~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~-~~~~~~~~v~~ir~~~----g~~  205 (394)
T 3mkc_A          152 -------------AS----LDVAIKGYAPLLEKAKAHNIRAVKVCVPIKA----DW-STKEVAYYLRELRGIL----GHD  205 (394)
T ss_dssp             -------------CC----HHHHHHHHHHHHHHHHHTTCSEEEEECCTTC----CC-CHHHHHHHHHHHHHHH----CSS
T ss_pred             -------------HH----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----CC-CHHHHHHHHHHHHHHH----CCC
T ss_conf             -------------44----5666655799999976517253324577667----75-6789999999999872----986


Q ss_pred             HHHHHCHHHHHHCCCCCEEECCCCCCCC-HHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCEE
Q ss_conf             2343110465320278511114686568-789999999876544869977676310423799886423883685043000
Q gi|254780670|r  235 LLIALDCAASAFFKKEKYILKGENLELQ-PNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLF  313 (424)
Q Consensus       235 i~i~lD~AAsefy~~~kY~~~~~~~~~t-~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~~g~~~~IvGDDL~  313 (424)
                      +.+.+|+.       +         .++ .++-+.+. +.+++|++.++|+|+..+|++++.++..+.+  +.|.+|.- 
T Consensus       206 ~~l~vDaN-------~---------~~~~~~~a~~~~-~~l~~~~~~~~EeP~~~~~~~~~~~l~~~~~--ipIa~~E~-  265 (394)
T 3mkc_A          206 TDMMVDYL-------Y---------RFTDWYEVARLL-NSIEDLELYFAEATLQHDDLSGHAKLVENTR--SRICGAEM-  265 (394)
T ss_dssp             SEEEEECT-------T---------CCCCHHHHHHHH-HHTGGGCCSEEESCSCTTCHHHHHHHHHHCS--SCBEECTT-
T ss_pred             CCCHHHHH-------C---------CCCCHHHHHHHH-HHHHCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCEEEEHH-
T ss_conf             13101322-------1---------665322322455-5553027764257766579899987633689--86784023-


Q ss_pred             ECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH--HHHHHHHCC-CHHE
Q ss_conf             021488852100386522342545300389999999999987986999507888723589--989998199-8010
Q gi|254780670|r  314 VTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTI--ADLAVATNC-GQIK  386 (424)
Q Consensus       314 vTn~~rl~~gi~~~~~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~i--aDLAVg~~a-~~iK  386 (424)
                      .+.+..+++.++.++++.+.+|++.+|-++++++.+++|+.+|..++ .|-. ++.=.+.  .|||.+++. .++-
T Consensus       266 ~~~~~~~~~~i~~~~~di~~~d~~~~GGi~~~~~ia~~a~~~gi~v~-~h~~-~~~i~~~a~~hlaaa~~~~~~~e  339 (394)
T 3mkc_A          266 STTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMATANNVQVM-PHNW-KTGITSAAAIHYQFAVGNAPYFE  339 (394)
T ss_dssp             CCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEEC-CCCC-SCHHHHHHHHHHHHHTCCSSCCE
T ss_pred             HHHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHCCCEEE-ECCC-CCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             32246778888717401143155426978999999999998799797-5799-96799999999999688987267