HHsearch results for GI: 254780670 and protein with PDBid: 3n4f_A

>3n4f_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MSE; 1.88A {Geobacillus SP}
Probab=99.51  E-value=1e-11  Score=105.50  Aligned_cols=276  Identities=20%  Similarity=0.237  Sum_probs=168.5

Q ss_pred             CEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             42999999848976766344786647754676268986516804899999998756789759885578988864653036
Q gi|254780670|r   18 PTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDG   97 (424)
Q Consensus        18 PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDg   97 (424)
                      ++|-|.+.|++|.+|.+-+..+                              ...++|.|+|+++.+.         ++ 
T Consensus        43 ~~~~V~i~t~dG~~G~GE~~~~------------------------------~~~~a~~lig~~~~~~---------~~-   82 (392)
T 3n4f_A           43 CTVDIARITIDGQTGYGSSIHM------------------------------TPEWAEDVIGRRLLDL---------FD-   82 (392)
T ss_dssp             EEEEEEEEEETTEEEEEECCSC------------------------------CHHHHHTTTTCBGGGG---------BC-
T ss_pred             CEEEEEEEECCCCCEEEEHHCC------------------------------CHHHHHHHHCCCHHHH---------HC-
T ss_conf             3399999988998089752048------------------------------1667898849877886---------46-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCC---CCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf             643221232222024489987526634984888225324564---75430000036645567766102565148877489
Q gi|254780670|r   98 TPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI---LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIR  174 (424)
Q Consensus        98 T~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~---lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf~  174 (424)
                        ....+..-++-|+.||++-+.++..++|||+.|+|.....   .++|+...  ++-..            +.....-.
T Consensus        83 --~~~~~~~~A~saId~ALwDl~gK~~g~Pl~~LLGG~~~~~~~~~~vp~Yas--~~~~~------------~~~~~~~~  146 (392)
T 3n4f_A           83 --DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDT--SLYFD------------DLHLADER  146 (392)
T ss_dssp             --TTSCBCGGGHHHHHHHHHHHHHHHHTSBHHHHSCCTTSCTTCCEEEEEEEE--EECBC------------CTTCCCHH
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEEEE--ECCCC------------CCCCCHHH
T ss_conf             --024438999999999999998988499199984875445565532436886--22457------------77641023


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCC
Q ss_conf             99899999999999875200001---367655764488684689999999999753853111023431104653202785
Q gi|254780670|r  175 EAIRMGAEVFHTLKKELKSKGYS---TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEK  251 (424)
Q Consensus       175 eal~~~~ev~~~lk~~L~~~g~~---t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~k  251 (424)
                      ..+.   +.....++.+ ++|+.   ..+|-.+...+...+.++-++.+ +++.++   .|.++.|.+|+          
T Consensus       147 ~~~~---~~~~~a~~~~-~~Gf~~~KiKvG~~~~~~~~~~~~~~Di~~v-~avR~~---~G~~~~l~vDa----------  208 (392)
T 3n4f_A          147 AAVA---LMQEEAMQGY-AKGQRHFKIKVGRGGRHMPLWEGTKRDIAIV-RGISEV---AGPAGKIMIDA----------  208 (392)
T ss_dssp             HHHH---HHHHHHHHHH-HTTCCCEEEECCHHHHTSCHHHHHHHHHHHH-HHHHHH---HCTTCCEEEEC----------
T ss_pred             HHHH---HHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCHHHHHHHH-HHHHHH---HCCCEEEEEEC----------
T ss_conf             3399---9999999999-7699778860357876665423899999999-999997---58981899974----------


Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH---CCCCEEEECCCEEECCHHHHHHHHHCCC
Q ss_conf             1111468656878999999987654486997767631042379988642---3883685043000021488852100386
Q gi|254780670|r  252 YILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK---IGSNCQLVGDDLFVTNPERLHKGINEEV  328 (424)
Q Consensus       252 Y~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~---~g~~~~IvGDDL~vTn~~rl~~gi~~~~  328 (424)
                            +.-.|.++-+++...| ++|.+.++|+|+.++| .+|..+.+.   .+..+-|.++-.+.+ .. ..+.+..++
T Consensus       209 ------N~~wt~~~A~~~~~~L-~~~~i~wiEeP~~~d~-~~~~~l~~~l~~~~~~~pia~gE~~~~-~~-~~~~i~~~a  278 (392)
T 3n4f_A          209 ------NNAYNLNLTKEVLAAL-SDVNLYWLEEAFHEDE-ALYEDLKEWLGQRGQNVLIADGEGLAS-PH-LIEWATRGR  278 (392)
T ss_dssp             ------TTCCCHHHHHHHHHHT-TTSCEEEEECSSSCCH-HHHHHHHHHHHHTTCCCEEEECCSSCC-TT-HHHHHHTTS
T ss_pred             ------CCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCC-HHHHHHHHHHHHCCCCCEEECCCCCCH-HH-HHHHHHCCC
T ss_conf             ------7553457899999975-1566502237888763-679999988752368854546764236-88-876531364


Q ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH--HHHHHHH
Q ss_conf             522342545300389999999999987986999507888723589--9899981
Q gi|254780670|r  329 ANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTI--ADLAVAT  380 (424)
Q Consensus       329 ~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~i--aDLAVg~  380 (424)
                      ++.+-+|+.. |-+|+++....+|+.+|+.++ .|..| +.=.+.  +||+.++
T Consensus       279 ~dii~~di~~-GGit~~~~ia~~A~~~gi~v~-~h~~~-~~i~~aa~~hl~aa~  329 (392)
T 3n4f_A          279 VDVLQYDIIW-PGFTHWMELGEKLDAHGLRSA-PHCYG-NAYGIYASGHLSAAV  329 (392)
T ss_dssp             CCEECCBTTT-BCHHHHHHHHHHHHHTTCEEC-CBCCS-CHHHHHHHHHHGGGC
T ss_pred             CEEECCCCCC-CCHHHHHHHHHHHHHCCCEEE-EECCC-CHHHHHHHHHHHHHC
T ss_conf             1153376566-409999999999998799187-50798-689999999999968