HHsearch results for GI: 254780670 and protein with PDBid: 3n4f_A
>3n4f_A Mandelate racemase/muconate lactonizing protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MSE; 1.88A {Geobacillus SP}
Probab=99.51 E-value=1e-11 Score=105.50 Aligned_cols=276 Identities=20% Similarity=0.237 Sum_probs=168.5
Q ss_pred CEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 42999999848976766344786647754676268986516804899999998756789759885578988864653036
Q gi|254780670|r 18 PTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDG 97 (424)
Q Consensus 18 PTvEvev~~~~g~~gra~~PSGaStG~~Ea~elrD~~~~~~G~gV~~Av~~in~~i~~~L~g~~~~dQ~~iD~~Li~lDg 97 (424)
++|-|.+.|++|.+|.+-+..+ ...++|.|+|+++.+. ++
T Consensus 43 ~~~~V~i~t~dG~~G~GE~~~~------------------------------~~~~a~~lig~~~~~~---------~~- 82 (392)
T 3n4f_A 43 CTVDIARITIDGQTGYGSSIHM------------------------------TPEWAEDVIGRRLLDL---------FD- 82 (392)
T ss_dssp EEEEEEEEEETTEEEEEECCSC------------------------------CHHHHHTTTTCBGGGG---------BC-
T ss_pred CEEEEEEEECCCCCEEEEHHCC------------------------------CHHHHHHHHCCCHHHH---------HC-
T ss_conf 3399999988998089752048------------------------------1667898849877886---------46-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCC---CCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 643221232222024489987526634984888225324564---75430000036645567766102565148877489
Q gi|254780670|r 98 TPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI---LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIR 174 (424)
Q Consensus 98 T~nks~lGaNailAvSlA~akA~A~~~~~pLy~yl~~~~~~~---lP~P~~NiinGG~HA~~~l~iQEfmIiP~g~~sf~ 174 (424)
....+..-++-|+.||++-+.++..++|||+.|+|..... .++|+... ++-.. +.....-.
T Consensus 83 --~~~~~~~~A~saId~ALwDl~gK~~g~Pl~~LLGG~~~~~~~~~~vp~Yas--~~~~~------------~~~~~~~~ 146 (392)
T 3n4f_A 83 --DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDT--SLYFD------------DLHLADER 146 (392)
T ss_dssp --TTSCBCGGGHHHHHHHHHHHHHHHHTSBHHHHSCCTTSCTTCCEEEEEEEE--EECBC------------CTTCCCHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEEEE--ECCCC------------CCCCCHHH
T ss_conf --024438999999999999998988499199984875445565532436886--22457------------77641023
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCHHHHHHCCCCC
Q ss_conf 99899999999999875200001---367655764488684689999999999753853111023431104653202785
Q gi|254780670|r 175 EAIRMGAEVFHTLKKELKSKGYS---TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEK 251 (424)
Q Consensus 175 eal~~~~ev~~~lk~~L~~~g~~---t~vgDEGGfap~~~~~eeaL~ll~eAi~~aGy~~g~di~i~lD~AAsefy~~~k 251 (424)
..+. +.....++.+ ++|+. ..+|-.+...+...+.++-++.+ +++.++ .|.++.|.+|+
T Consensus 147 ~~~~---~~~~~a~~~~-~~Gf~~~KiKvG~~~~~~~~~~~~~~Di~~v-~avR~~---~G~~~~l~vDa---------- 208 (392)
T 3n4f_A 147 AAVA---LMQEEAMQGY-AKGQRHFKIKVGRGGRHMPLWEGTKRDIAIV-RGISEV---AGPAGKIMIDA---------- 208 (392)
T ss_dssp HHHH---HHHHHHHHHH-HTTCCCEEEECCHHHHTSCHHHHHHHHHHHH-HHHHHH---HCTTCCEEEEC----------
T ss_pred HHHH---HHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCCHHHHHHHH-HHHHHH---HCCCEEEEEEC----------
T ss_conf 3399---9999999999-7699778860357876665423899999999-999997---58981899974----------
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH---CCCCEEEECCCEEECCHHHHHHHHHCCC
Q ss_conf 1111468656878999999987654486997767631042379988642---3883685043000021488852100386
Q gi|254780670|r 252 YILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK---IGSNCQLVGDDLFVTNPERLHKGINEEV 328 (424)
Q Consensus 252 Y~~~~~~~~~t~~elid~y~~l~~~yPI~sIEDP~~e~D~~gw~~l~~~---~g~~~~IvGDDL~vTn~~rl~~gi~~~~ 328 (424)
+.-.|.++-+++...| ++|.+.++|+|+.++| .+|..+.+. .+..+-|.++-.+.+ .. ..+.+..++
T Consensus 209 ------N~~wt~~~A~~~~~~L-~~~~i~wiEeP~~~d~-~~~~~l~~~l~~~~~~~pia~gE~~~~-~~-~~~~i~~~a 278 (392)
T 3n4f_A 209 ------NNAYNLNLTKEVLAAL-SDVNLYWLEEAFHEDE-ALYEDLKEWLGQRGQNVLIADGEGLAS-PH-LIEWATRGR 278 (392)
T ss_dssp ------TTCCCHHHHHHHHHHT-TTSCEEEEECSSSCCH-HHHHHHHHHHHHTTCCCEEEECCSSCC-TT-HHHHHHTTS
T ss_pred ------CCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCC-HHHHHHHHHHHHCCCCCEEECCCCCCH-HH-HHHHHHCCC
T ss_conf ------7553457899999975-1566502237888763-679999988752368854546764236-88-876531364
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH--HHHHHHH
Q ss_conf 522342545300389999999999987986999507888723589--9899981
Q gi|254780670|r 329 ANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTI--ADLAVAT 380 (424)
Q Consensus 329 ~NailiK~NQiGTvset~ea~~~a~~~g~~~ivShRSGETeD~~i--aDLAVg~ 380 (424)
++.+-+|+.. |-+|+++....+|+.+|+.++ .|..| +.=.+. +||+.++
T Consensus 279 ~dii~~di~~-GGit~~~~ia~~A~~~gi~v~-~h~~~-~~i~~aa~~hl~aa~ 329 (392)
T 3n4f_A 279 VDVLQYDIIW-PGFTHWMELGEKLDAHGLRSA-PHCYG-NAYGIYASGHLSAAV 329 (392)
T ss_dssp CCEECCBTTT-BCHHHHHHHHHHHHHTTCEEC-CBCCS-CHHHHHHHHHHGGGC
T ss_pred CEEECCCCCC-CCHHHHHHHHHHHHHCCCEEE-EECCC-CHHHHHHHHHHHHHC
T ss_conf 1153376566-409999999999998799187-50798-689999999999968