RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>gnl|CDD|48188 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions..
Length = 408
Score = 649 bits (1676), Expect = 0.0
Identities = 256/407 (62%), Positives = 310/407 (76%), Gaps = 4/407 (0%)
Query: 5 DIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKGVL 63
I ARE++DSRG+PT+EV+V EDG GRA VPSGASTG HEA ELRD +K RY GKGVL
Sbjct: 1 KIKAREILDSRGNPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVL 60
Query: 64 KAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQT 123
KA+ VN+ I AL+G D DQ IDK++I+LDGTPNKS+LGANAILGVSLAV+KAAA
Sbjct: 61 KAVKNVNEIIAPALIGMDVTDQRAIDKLLIELDGTPNKSKLGANAILGVSLAVAKAAAAA 120
Query: 124 SNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEV 183
LPLY+YLGG +A++LPVP+ N++NGG HA N LDFQEFMI+PVGA + EA+RMGAEV
Sbjct: 121 LGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSEALRMGAEV 180
Query: 184 FHTLKKELKSKG--YSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241
+HTLKK LK KG +TNVGDEGGF+PNL + + ALDL+ +IEKAGY GK + IALD
Sbjct: 181 YHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDV 240
Query: 242 AASAFFKKEKYILKG-ENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300
AAS F+ + KY+ E +L E+ Y LV +YPI SIED EDDW GW LT K
Sbjct: 241 AASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAK 300
Query: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360
+G Q+VGDDLFVTNPERL KGI ++ ANA+LIK NQIG+++ET+ I+ A+ GY +
Sbjct: 301 LGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKNGYGVV 360
Query: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEE 407
+SHRSGETED IADLAVA GQIKTG+ RS+R AKYNQL+RIEE
Sbjct: 361 VSHRSGETEDTFIADLAVALGAGQIKTGAPCRSERTAKYNQLLRIEE 407
>gnl|CDD|30497 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 635 bits (1640), Expect = 0.0
Identities = 273/417 (65%), Positives = 335/417 (80%), Gaps = 2/417 (0%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGV 62
I D+IARE++DSRG+PT+EV+V LEDG GRA VPSGASTG HEA ELRD + RY GKGV
Sbjct: 4 IEDVIAREILDSRGNPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGV 63
Query: 63 LKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122
LKA+A VN+ I AL+G DA DQ LID ++I+LDGT NKS+LGANAILGVSLAV+KAAA
Sbjct: 64 LKAVANVNEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAA 123
Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAE 182
+ +PLY+YLGG +A +LPVP+MN++NGG HADN LD QEFMIMPVGAE+ +EA+R GAE
Sbjct: 124 SLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKEALRAGAE 183
Query: 183 VFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCA 242
VFH LKK LK KG ST VGDEGGF+PNLK+ + ALD++ +IE+AGY G+D+ +ALD A
Sbjct: 184 VFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVA 243
Query: 243 ASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIG 302
AS F+K KY+L+GE L E+ Y LV +YPI SIED +SEDDW G+ LT ++G
Sbjct: 244 ASEFYKDGKYVLEGE--SLTSEELIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLG 301
Query: 303 SNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362
Q+VGDDLFVTNP+RL KGI + ANAILIKPNQIG+++ETL I A+ AGY ++IS
Sbjct: 302 DKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVIS 361
Query: 363 HRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRS 419
HRSGETED TIADLAVATN GQIKTGSL+RS+R+AKYN+L+RIEE LG +A++AG
Sbjct: 362 HRSGETEDTTIADLAVATNAGQIKTGSLSRSERVAKYNELLRIEEELGDKARYAGIK 418
>gnl|CDD|37881 KOG2670, KOG2670, KOG2670, Enolase [Carbohydrate transport and
metabolism].
Length = 433
Score = 474 bits (1221), Expect = e-134
Identities = 223/434 (51%), Positives = 293/434 (67%), Gaps = 20/434 (4%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
M I + AR++ DSRG+PT+EVD+ E G RA VPSGASTGI+EA ELRD +K +Y G
Sbjct: 1 MSIIKVKARQIYDSRGNPTVEVDLTTEKG-VFRAAVPSGASTGIYEALELRDGDKSKYMG 59
Query: 60 KGVLKAIAFVNDEIRTALLG--CDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVS 117
KGVLKA+ +N+ I AL+ D DQ ID MI+LDGT NKS+LGANAILGVSLAV
Sbjct: 60 KGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIELDGTENKSKLGANAILGVSLAVC 119
Query: 118 KAAAQTSNLPLYKYLGGCSAH----ILPVPLMNILNGGIHADNALDFQEFMIMPVGAENI 173
KA A +PLYK++ + + +LPVP N+LNGG HA N L QEFMI+PVGA++
Sbjct: 120 KAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGADSF 179
Query: 174 REAIRMGAEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNA 231
EA+RMG+EV+H LK +K K +TNVGDEGGF+PN++T + ALDLI +I KAGY
Sbjct: 180 AEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTG 239
Query: 232 GKDLLIALDCAASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDG 285
+ I +D AAS F+K KY L ++ L +++A + + YPI SIED
Sbjct: 240 --KVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPIVSIEDP 297
Query: 286 MSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSET 345
+DDW W ++G Q+VGDDL VTNP+R+ I E+ NA+L+K NQIG+V+E+
Sbjct: 298 FDQDDWEAWSKFFKEVG--IQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTES 355
Query: 346 LNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRI 405
+ + A+ AG+ ++SHRSGETED IADL V GQIKTG+ RS+R+AKYNQL+RI
Sbjct: 356 IEAAKLARSAGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLAKYNQLLRI 415
Query: 406 EESLGKQAKFAGRS 419
EE LG A++AG +
Sbjct: 416 EEELGDDARYAGEN 429
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 411 bits (1059), Expect = e-115
Identities = 153/293 (52%), Positives = 206/293 (70%), Gaps = 12/293 (4%)
Query: 137 AHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGY 196
++LPVP+MN++NGG HA N L QEFMI+P GA + EA+RMG+EV+H LK +K+K
Sbjct: 1 PYVLPVPMMNVINGGSHAGNKLAMQEFMILPTGASSFTEAMRMGSEVYHNLKSVIKAKYG 60
Query: 197 S--TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE--KY 252
TNVGDEGGF+PN+++ ALDLI +IEKAGY + IA+D A+S F+ K+ KY
Sbjct: 61 QDATNVGDEGGFAPNIQSNKEALDLIVEAIEKAGYTG--KVKIAMDVASSEFYNKKDGKY 118
Query: 253 ILKGENLELQPN------EMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQ 306
L +N + P+ ++A L+ +YPI SIED EDDW WK LT +G Q
Sbjct: 119 DLDFKNPKSDPSKWLTSDQLADLYKELIKKYPIVSIEDPFDEDDWEAWKKLTASLGDKIQ 178
Query: 307 LVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSG 366
+VGDDL VTNP+R+ K I ++ N++L+K NQIGSV+E+L ++ A+ AG+ ++SHRSG
Sbjct: 179 IVGDDLTVTNPKRIAKAIEKKACNSLLLKVNQIGSVTESLAAVKMAKDAGWGVMVSHRSG 238
Query: 367 ETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRS 419
ETED IADL V N GQIKTG+ RS+R+AKYNQL+RIEE LG +AK+AGR+
Sbjct: 239 ETEDTFIADLVVGLNAGQIKTGAPCRSERLAKYNQLLRIEEELGSKAKYAGRN 291
>gnl|CDD|146535 pfam03952, Enolase_N, Enolase, N-terminal domain.
Length = 132
Score = 235 bits (601), Expect = 3e-62
Identities = 90/131 (68%), Positives = 105/131 (80%), Gaps = 1/131 (0%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
I I ARE++DSRG+PT+EV+V LEDG+ GRA VPSGASTG HEA ELRD +K RY GKG
Sbjct: 2 ITKIKAREILDSRGNPTVEVEVTLEDGTFGRAAVPSGASTGSHEAVELRDGDKSRYGGKG 61
Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121
VLKA+ VN+ I AL+G DA DQ IDK +I+LDGTPNKS+LGANAIL VSLAV+KAAA
Sbjct: 62 VLKAVENVNEIIAPALIGMDATDQRAIDKTLIELDGTPNKSKLGANAILAVSLAVAKAAA 121
Query: 122 QTSNLPLYKYL 132
LPLY+YL
Sbjct: 122 AALGLPLYRYL 132
>gnl|CDD|73188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase..
Length = 229
Score = 55.7 bits (134), Expect = 2e-08
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 22/158 (13%)
Query: 232 GKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDW 291
G D +A+D + P E +++Y + IE+ + DD
Sbjct: 92 GPDARLAVDANGA----------------WTPKEAIRL-IRALEKYGLAWIEEPCAPDDL 134
Query: 292 HGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEK 351
G+ L + G + D+ T + L + + + IKP ++G ++E+ +
Sbjct: 135 EGYAALRRRTG--IPIAADESVTTVDDALE-ALELGAVDILQIKPTRVGGLTESRRAADL 191
Query: 352 AQMAGYPSIISHRSGETEDHT-IADLAVAT-NCGQIKT 387
A+ G ++ + LA A N I+T
Sbjct: 192 AEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAIET 229
Score = 28.3 bits (63), Expect = 3.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 108 AILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPV 142
I G+ +A+ AA+ +PL + LGG S +P
Sbjct: 43 VISGIDMALWDLAAKALGVPLAELLGGGSRDRVPA 77
>gnl|CDD|48191 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the
enolase superfamily. Enzymes of this subgroup share
three conserved carboxylate ligands for the essential
divalent metal ion (usually Mg2+), two aspartates and a
glutamate, and conserved catalytic residues, a
Lys-X-Lys motif and a conserved histidine-aspartate
dyad. Members of the MR subgroup are mandelate racemase,
D-glucarate/L-idarate dehydratase (GlucD),
D-altronate/D-mannonate dehydratase , D-galactonate
dehydratase (GalD) , D-gluconate dehydratase (GlcD), and
L-rhamnonate dehydratase (RhamD)..
Length = 357
Score = 39.1 bits (91), Expect = 0.002
Identities = 56/310 (18%), Positives = 101/310 (32%), Gaps = 59/310 (19%)
Query: 57 YFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLG---ANAILGVS 113
Y G A + D + L+G D D I+++ L G AI V
Sbjct: 44 YPGGRPSAVAAAIEDLLAPLLIGRDPLD---IERLWEKLYRRLFWRGRGGVAMAAISAVD 100
Query: 114 LAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENI 173
+A+ + + +P+YK LGG + V G D++ + AE
Sbjct: 101 IALWDIKGKAAGVPVYKLLGGKVRDRVRV-----YASGGGYDDSPE--------ELAEEA 147
Query: 174 REAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGK 233
+ A+ G F +K GG + L + ++ +A G
Sbjct: 148 KRAVAEG---FTAVKL------------KVGGPDSGGEDLREDLARVR-AVREA---VGP 188
Query: 234 DLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHG 293
D+ + +D N E A LA +++Y ++ E+ + DD G
Sbjct: 189 DVDLMVDA----------------NGRWDLAE-AIRLARALEEYDLFWFEEPVPPDDLEG 231
Query: 294 WKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQ 353
L G++L+ + + I ++G ++E A+
Sbjct: 232 LARLRQATSVPIA-AGENLY--TRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAE 288
Query: 354 MAGYPSIISH 363
G + H
Sbjct: 289 AHGVR-VAPH 297
>gnl|CDD|34556 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 38.5 bits (89), Expect = 0.003
Identities = 53/310 (17%), Positives = 94/310 (30%), Gaps = 59/310 (19%)
Query: 57 YFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAV 116
G + L+G D D I + + G + + AI V +A+
Sbjct: 49 VPGGRARYGEEAEAVLLAPLLIGRDPFDIERIWQKLYR-AGFARRGGITMAAISAVDIAL 107
Query: 117 SKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176
A + +P+YK LGG + + G + A AE R
Sbjct: 108 WDLAGKALGVPVYKLLGGKVRDEVRA-YASGGGGEDPEEMA------------AEAARAL 154
Query: 177 IRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLL 236
+ +G F LK LK D + G D+
Sbjct: 155 VELG---FKALK---------------------LKVGVGDGDEDLERVRALREAVGDDVR 190
Query: 237 IALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKI 296
+ +D N E A LA +++Y + IE+ + DD G +
Sbjct: 191 LMVDA----------------NGGWTLEE-AIRLARALEEYGLEWIEEPLPPDDLEGLRE 233
Query: 297 LTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAG 356
L ++ + + V + + + + ++G ++E L A+ G
Sbjct: 234 LRA--ATSTPIAAGE-SVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFG 290
Query: 357 YPSIISHRSG 366
+ H G
Sbjct: 291 VM-VGPHVEG 299
>gnl|CDD|73348 cd03327, MR_like_2, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 2. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown..
Length = 341
Score = 34.8 bits (80), Expect = 0.044
Identities = 49/238 (20%), Positives = 82/238 (34%), Gaps = 49/238 (20%)
Query: 65 AIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTS 124
A V+ + L+G D D + M + + AI V LA+ +
Sbjct: 34 ACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIR 93
Query: 125 NLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVF 184
P+YK LGG + +P G++ + + + EA E +
Sbjct: 94 GEPVYKLLGGRTRDKIPAYA-----SGLYPTDLDELPD------------EAKEYLKEGY 136
Query: 185 HTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS 244
+K GY + G G ++L+ E GY D+ + LDC
Sbjct: 137 RGMKMRF---GYGPSDGHAG--------LRKNVELVRAIREAVGY----DVDLMLDC--- 178
Query: 245 AFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIG 302
Y+ NL A +A +++Y + IE+ + DD G+ L G
Sbjct: 179 -------YM--SWNLNY-----AIKMARALEKYELRWIEEPLIPDDIEGYAELKKATG 222
>gnl|CDD|73345 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup
of the enolase superfamily. Enzymes of this subgroup
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and residues that can
function as general acid/base catalysts, a Lys-X-Lys
motif and another conserved lysine. Despite these
conserved residues, the members of the MLE subgroup,
like muconate lactonizing enzyme, o-succinylbenzoate
synthase (OSBS) and N-acylamino acid racemase (NAAAR),
catalyze different reactions..
Length = 265
Score = 34.1 bits (78), Expect = 0.082
Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 64/280 (22%)
Query: 111 GVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGA 170
V +A+ + +P+Y LGG + V + ++L G A+ A
Sbjct: 47 AVDMALWDLWGKRLGVPVYLLLGG---YRDRVRVAHMLGLGEPAEVA------------- 90
Query: 171 ENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDL-IANSIEKAGY 229
E R A+ G F T K LK VG D A D+ + ++ +A
Sbjct: 91 EEARRALEAG---FRTFK--LK-------VG-----------RDPARDVAVVAALREA-- 125
Query: 230 NAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSED 289
G D + +D N P + L L + + +E + D
Sbjct: 126 -VGDDAELRVDA----------------NRGWTPKQAIRALRAL-EDLGLDYVEQPLPAD 167
Query: 290 DWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTI 349
D G L + ++ D+ P + + A+A+ IK + G +++ +
Sbjct: 168 DLEGRAALARATDT--PIMADES-AFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVL 224
Query: 350 EKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGS 389
A+ G P ++ E+ T+A+ +A +
Sbjct: 225 AVAEALGLPVMVGS-MIESGLGTLANAHLAAALRAVTLPG 263
>gnl|CDD|31630 COG1441, MenC, O-succinylbenzoate synthase [Coenzyme metabolism].
Length = 321
Score = 32.3 bits (73), Expect = 0.29
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 325 NEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362
E A++IKP GS+ +++A G ++IS
Sbjct: 226 AEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVIS 263
>gnl|CDD|48193 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric
enzyme, catalyses the conversion of cis,cis-muconate
(CCM) to muconolactone (ML) in the catechol branch of
the beta-ketoadipate pathway. This pathway is used in
soil microbes to breakdown lignin-derived aromatics,
catechol and protocatechuate, to citric acid cycle
intermediates. Some bacterial species are also capable
of dehalogenating chloroaromatic compounds by the action
of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs
are members of the enolase superfamily characterized by
the presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and that
is stabilized by coordination to the essential Mg2+
ion..
Length = 365
Score = 32.1 bits (73), Expect = 0.32
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 57 YFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAV 116
+ G+ A ++ + L+G DA + I M LD + AI +A+
Sbjct: 55 WGGESPETIKAIIDRYLAPLLIGRDATN---IGAAMALLDRAVAGNLFAKAAI---EMAL 108
Query: 117 SKAAAQTSNLPLYKYLGGCSAHILPV 142
A + LP+ + LGG LPV
Sbjct: 109 LDAQGRRLGLPVSELLGGRVRDSLPV 134
>gnl|CDD|73346 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the
conversion of
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
(SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate
(o-succinylbenzoate or OSB), a reaction in the
menaquinone biosynthetic pathway. Menaquinone is an
essential cofactor for anaerobic growth in eubacteria
and some archaea. OSBS belongs to the enolase
superfamily of enzymes, characterized by the presence of
an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion..
Length = 263
Score = 31.8 bits (72), Expect = 0.36
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 265 EMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGI 324
E A + I IE + DD + L + + D+ + L
Sbjct: 141 EEALAFLEALAAGRIEYIEQPLPPDDLAELRRLAAGVP----IALDESLRRLDDPLAL-A 195
Query: 325 NEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362
A+++KP +G L E+A+ G P+++S
Sbjct: 196 AAGALGALVLKPALLGGPRALLELAEEARARGIPAVVS 233
>gnl|CDD|143482 cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Ornithine Decarboxylase. This
subfamily is composed mainly of eukaryotic ornithine
decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes
from prokaryotes represented by Vibrio vulnificus
LysineOrnithine decarboxylase. These are fold type III
PLP-dependent enzymes that differ from most bacterial
ODCs which are fold type I PLP-dependent enzymes. ODC
participates in the formation of putrescine by
catalyzing the decarboxylation of ornithine, the first
step in polyamine biosynthesis. Members of this
subfamily contain an N-terminal PLP-binding TIM-barrel
domain and a C-terminal beta-sandwich domain, similar to
bacterial alanine racemases. They exist as homodimers
with active sites that lie at the interface between the
TIM barrel domain of one subunit and the beta-sandwich
domain of the other subunit. Homodimer formation and the
presence of the PLP cofactor are required for catalytic
activity. Also members of this subfamily are proteins
with homology to ODC but do not possess any catalytic
activity, the Antizyme inhibitor (AZI) and ODC-paralogue
(ODC-p). AZI binds to the regulatory protein Antizyme
with a higher affinity than ODC and prevents ODC
degradation. ODC-p is a novel ODC-like protein, present
only in mammals, that is specifically exressed in the
brain and testes. ODC-p may function as a
tissue-specific antizyme inhibitory protein.
Length = 362
Score = 29.8 bits (68), Expect = 1.4
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 170 AENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKA 227
+AI EVF EL K ++G GGF + + + IA I +A
Sbjct: 169 PSAYVDAIADAREVFDEA-AELGFKLKLLDIG--GGFPGSYDGVVPSFEEIAAVINRA 223
>gnl|CDD|73347 cd03322, rpsA, The starvation sensing protein RpsA from E.coli and
its homologs are lactonizing enzymes whose putative
targets are homoserine lactone (HSL)-derivative. They
are part of the mandelate racemase (MR)-like subfamily
of the enolase superfamily. Enzymes of this subfamily
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and catalytic residues, a
partially conserved Lys-X-Lys motif and a conserved
histidine-aspartate dyad..
Length = 361
Score = 29.5 bits (66), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 107 NAILGVSLAVSKAAAQTSNLPLYKYLGGCS 136
NAI V +A+ + + +PLY+ LGG S
Sbjct: 83 NAIAAVDMALWDIKGKAAGMPLYQLLGGKS 112
>gnl|CDD|146488 pfam03881, Fructosamin_kin, Fructosamine kinase. This family
includes eukaryotic fructosamine-3-kinase enzymes. The
family also includes bacterial members that have not
been characterized but probably have a similar or
identical function.
Length = 287
Score = 29.5 bits (67), Expect = 1.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 7 IAREVIDSRGSP-TIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60
IA+++ + G+P TI T R V G I++A+ + D E+RYF K
Sbjct: 4 IAQQLSEQLGTPFTI----------TEREKVGGG---DINQAYRISDGEQRYFVK 45
>gnl|CDD|38947 KOG3743, KOG3743, KOG3743, Recombination signal binding protein-J
kappa(CBF1, Su(H), HS2NF5) [Transcription].
Length = 622
Score = 28.5 bits (63), Expect = 3.7
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 99 PNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNAL 158
N+ L A A + + + P Y+ +G ++ ++PVP++ L D A+
Sbjct: 456 ANRWFLNDGA------AWTIISTDKAEYPFYEAMGQVASPVMPVPVVVSLELDGGGDVAM 509
>gnl|CDD|113661 pfam04895, DUF651, Archaeal protein of unknown function (DUF651).
This family represents the carboxy terminal region of an
archaeal protein of unknown function.
Length = 110
Score = 27.2 bits (61), Expect = 8.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 166 MPVGA----ENIREAIRMGAEVFHTLKKELK 192
PVG EN+REA++ E F TL++ L
Sbjct: 48 APVGVWQVRENVREALKGKPEKFDTLEEALD 78
>gnl|CDD|36838 KOG1625, KOG1625, KOG1625, DNA polymerase alpha-primase complex,
polymerase-associated subunit B [Replication,
recombination and repair].
Length = 600
Score = 27.3 bits (60), Expect = 8.6
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 296 ILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQM 354
IL + + + V + + NP RL KG N + I+ + G ET+ AQ+
Sbjct: 540 ILPSDLRHFVKDVNGCVVI-NPGRLAKGTNGGTFAKLTIRLPEAGMGGETVWDRAAAQI 597
>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
aldehyde dehydrogenase (AAS00426)-like. Uncharacterized
aldehyde dehydrogenase of Saccharopolyspora spinosa
(AAS00426) and other similar sequences, are present in
this CD.
Length = 454
Score = 27.2 bits (61), Expect = 8.8
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 204 GGFSPNLKTADSALDLIANSIEKAGY-NAG 232
GG SP + AD+ L+ + A NAG
Sbjct: 228 GGKSPQIVFADADLEAALPVVVNAIIQNAG 257
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,885,501
Number of extensions: 258197
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 27
Length of query: 424
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,189,273
Effective search space: 1374081544
Effective search space used: 1374081544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)