RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >gnl|CDD|178845 PRK00077, eno, enolase; Provisional. Length = 425 Score = 808 bits (2090), Expect = 0.0 Identities = 288/422 (68%), Positives = 343/422 (81%), Gaps = 3/422 (0%) Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59 I DIIARE++DSRG+PT+EV+V LEDG+ GRA VPSGASTG EA ELRD +K RY G Sbjct: 2 SKIEDIIAREILDSRGNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLG 61 Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119 KGVLKA+ VN+EI AL+G DA DQ IDK MI+LDGTPNKS+LGANAILGVSLAV+KA Sbjct: 62 KGVLKAVENVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKA 121 Query: 120 AAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRM 179 AA + LPLY+YLGG +A +LPVP+MNI+NGG HADN +D QEFMIMPVGA + +EA+RM Sbjct: 122 AADSLGLPLYRYLGGPNAKVLPVPMMNIINGGAHADNNVDIQEFMIMPVGAPSFKEALRM 181 Query: 180 GAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIAL 239 GAEVFHTLKK LK KG ST VGDEGGF+PNLK+ + ALDLI +IEKAGY G+D+ +AL Sbjct: 182 GAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKAGYKPGEDIALAL 241 Query: 240 DCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTN 299 DCAAS F+K KY+L+GE L EM YLA LVD+YPI SIEDG+ E+DW GWK+LT Sbjct: 242 DCAASEFYKDGKYVLEGEGLT--SEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTE 299 Query: 300 KIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPS 359 K+G QLVGDDLFVTN +RL KGI + AN+ILIK NQIG+++ETL+ IE A+ AGY + Sbjct: 300 KLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTA 359 Query: 360 IISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRS 419 ++SHRSGETED TIADLAVATN GQIKTGSL+RS+RIAKYNQL+RIEE LG A++AG+ Sbjct: 360 VVSHRSGETEDTTIADLAVATNAGQIKTGSLSRSERIAKYNQLLRIEEELGDAARYAGKK 419 Query: 420 IL 421 Sbjct: 420 AF 421 >gnl|CDD|162181 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase. Length = 425 Score = 690 bits (1782), Expect = 0.0 Identities = 279/420 (66%), Positives = 343/420 (81%), Gaps = 3/420 (0%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61 I DI ARE++DSRG+PT+EV+V LEDG+ GRA VPSGASTG EA ELRD +K RY GKG Sbjct: 1 IKDIRAREILDSRGNPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKG 60 Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121 VLKA+ VND I AL+G DA DQ ID+IMI+LDGTPNKS+LGANAILGVS+AV+KAAA Sbjct: 61 VLKAVENVNDIIAPALIGMDAFDQREIDQIMIELDGTPNKSKLGANAILGVSMAVAKAAA 120 Query: 122 QTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA 181 ++ LPLY+YLGG +A++LPVP+MNI+NGG HADN LDFQEFMIMPVGA++ REA+RMGA Sbjct: 121 KSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFREALRMGA 180 Query: 182 EVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241 EVFH LKK LK KG +T VGDEGGF+PNL + + AL++I+ +IEKAGY G+D+ +ALDC Sbjct: 181 EVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDC 240 Query: 242 AASAFF--KKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTN 299 AAS F+ + KY+ KGEN +L EM Y LV++YPI SIEDG+SE+DW GW LT Sbjct: 241 AASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTK 300 Query: 300 KIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPS 359 ++G Q+VGDDLFVTN E L +GI VAN+ILIKPNQIG+++ETL+ +E A+ AGY + Sbjct: 301 ELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTETLDAVELAKKAGYTA 360 Query: 360 IISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRS 419 +ISHRSGETED TIADLAVA N GQIKTGSL+RS+RIAKYNQL+RIEE LG A++AG++ Sbjct: 361 VISHRSGETEDTTIADLAVALNAGQIKTGSLSRSERIAKYNQLLRIEEELGDSARYAGKN 420 >gnl|CDD|173375 PTZ00081, PTZ00081, enolase; Provisional. Length = 439 Score = 526 bits (1358), Expect = e-150 Identities = 235/440 (53%), Positives = 299/440 (67%), Gaps = 27/440 (6%) Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59 I I ARE++DSRG+PT+EVD+ E G RA VPSGASTGI+EA ELRD +K RY G Sbjct: 2 STIKSIKAREILDSRGNPTVEVDLTTEKGVF-RAAVPSGASTGIYEALELRDGDKSRYLG 60 Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMID-LDGTPN-----KSRLGANAILGVS 113 KGVLKA+ VN+ I AL+G D DQ +DK+M++ LDGT N KS+LGANAIL VS Sbjct: 61 KGVLKAVENVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVS 120 Query: 114 LAVSKAAAQTSNLPLYKYL----GGCSAHI-LPVPLMNILNGGIHADNALDFQEFMIMPV 168 +AV++AAA +PLYKYL G + LPVP N++NGG HA N L FQEFMI PV Sbjct: 121 MAVARAAAAAKGVPLYKYLAQLAGKPTDKFVLPVPCFNVINGGKHAGNKLAFQEFMIAPV 180 Query: 169 GAENIREAIRMGAEVFHTLKKELKSKGY---STNVGDEGGFSPNLKTADSALDLIANSIE 225 GA + +EA+RMGAEV+H+LK +K K Y +TNVGDEGGF+PN+K + ALDL+ +I+ Sbjct: 181 GAPSFKEALRMGAEVYHSLKSVIKKK-YGLDATNVGDEGGFAPNIKDPEEALDLLVEAIK 239 Query: 226 KAGYNAGKDLLIALDCAASAFFKKEK--YIL------KGENLELQPNEMASYLANLVDQY 277 KAGY GK + I +D AAS F+ KEK Y L ++ +L E+ +LV +Y Sbjct: 240 KAGYE-GK-VKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKY 297 Query: 278 PIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPN 337 PI SIED +DDW + LT IG Q+VGDDL VTNP R+ K I ++ NA+L+K N Sbjct: 298 PIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVN 357 Query: 338 QIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIA 397 QIG+V+E + + AQ G+ ++SHRSGETED IADL V GQIKTG+ RS+R+A Sbjct: 358 QIGTVTEAIEAAKLAQKNGWGVMVSHRSGETEDTFIADLVVGLGTGQIKTGAPCRSERLA 417 Query: 398 KYNQLIRIEESLGKQAKFAG 417 KYNQL+RIEE LG A +AG Sbjct: 418 KYNQLLRIEEELGSNAVYAG 437 >gnl|CDD|177785 PLN00191, PLN00191, enolase. Length = 457 Score = 501 bits (1292), Expect = e-142 Identities = 225/429 (52%), Positives = 292/429 (68%), Gaps = 17/429 (3%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGV 62 I + AR++IDSRG+PT+EVD+ G RA VPSGASTGI+EA ELRD +K Y GKGV Sbjct: 28 ITKVKARQIIDSRGNPTVEVDLHTSKG-MFRAAVPSGASTGIYEALELRDGDKDYLGKGV 86 Query: 63 LKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122 LKA+ VN+ I AL+G D DQ ID M++LDGTPNK +LGANAIL VSLAV KA A Sbjct: 87 LKAVKNVNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAA 146 Query: 123 TSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRM 179 +PLYK+ L G +LPVP N++NGG HA N L QEFMI+PVGA + +EA++M Sbjct: 147 EKGVPLYKHIADLAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMQM 206 Query: 180 GAEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237 G+EV+H LK +K K + NVGDEGGF+PN++ L+L+ +IEKAGY GK + I Sbjct: 207 GSEVYHHLKAVIKKKYGQDACNVGDEGGFAPNIQDNKEGLELLKEAIEKAGYT-GK-IKI 264 Query: 238 ALDCAASAFFKKE-KYIL--KGEN----LELQPNEMASYLANLVDQYPIYSIEDGMSEDD 290 +D AAS F+ K+ KY L K EN + +E+ V YPI SIED +DD Sbjct: 265 GMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIEDPFDQDD 324 Query: 291 WHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIE 350 W W LT+ + Q+VGDDL VTNP+R+ K I E+ NA+L+K NQIG+V+E++ ++ Sbjct: 325 WEHWAKLTSL--EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVK 382 Query: 351 KAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLG 410 ++ AG+ + SHRSGETED IADLAV GQIKTG+ RS+R+AKYNQL+RIEE LG Sbjct: 383 MSKAAGWGVMTSHRSGETEDSFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEELG 442 Query: 411 KQAKFAGRS 419 +A +AG + Sbjct: 443 DEAVYAGEN 451 >gnl|CDD|169397 PRK08350, PRK08350, hypothetical protein; Provisional. Length = 341 Score = 88.3 bits (219), Expect = 3e-18 Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 14/148 (9%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGV 62 I +II R + G ++EVDV + D GR P I E L E Sbjct: 4 IENIIGRVAVLRGGKYSVEVDV-ITDSGFGRFAAP------IDENPSLYIAEAH------ 50 Query: 63 LKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122 +A++ V++ I L+G DA +Q LID + ++DGT + S +GAN L VS+AV+KAAA Sbjct: 51 -RAVSEVDEIIGPELIGFDASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAAN 109 Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNG 150 + N+PLY Y+GG LPVP++ Sbjct: 110 SKNMPLYSYIGGTFTTELPVPILEFAED 137 Score = 47.1 bits (112), Expect = 8e-06 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%) Query: 330 NAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGS 389 NA+ IKP +G++++ N + + I++ E+ D + LAV C + Sbjct: 255 NALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYESADEALPHLAVGLRCPAM---- 310 Query: 390 LARSDRIAKYNQLIRIEESLGKQAK 414 L D + K N+L RI E LG++ + Sbjct: 311 LIHKDSVEKINELNRIAEDLGERGR 335 >gnl|CDD|173571 PTZ00378, PTZ00378, hypothetical protein; Provisional. Length = 518 Score = 42.6 bits (100), Expect = 2e-04 Identities = 53/269 (19%), Positives = 95/269 (35%), Gaps = 53/269 (19%) Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDG---STGRAMVPS------------GASTGIHEA 47 I ++ EV+ G + + L +G S+G + PS + EA Sbjct: 51 IRALVHNEVLSPAGETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEA 110 Query: 48 FELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGAN 107 + YF + LL ARDQ D + T + +G+ Sbjct: 111 -----LQNSYFPR----------------LLQLGARDQREFDSTLRAALSTSPLANVGSA 149 Query: 108 AILGVSLAVSKAAAQTSNLPLYKYLGG-----CSAHILPVP--LMNILNGGIHADNALDF 160 +S+ S AAA+ ++PL++YL S +P + G + L Sbjct: 150 VQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCITFFGPGNPSTARLAL 209 Query: 161 QEFMIMPVGAEN--IREAIRMGAEVFHTLKKELKSKGYSTNVGDEGG--FSPNLKTADSA 216 + + PV +RE ++ FH + ++++V +G + D A Sbjct: 210 KSVLFSPVMPSGTVLRERMQKIFAAFHHFC-----QSHNSSVRSDGSLHWDGFANLTD-A 263 Query: 217 LDLIANSIEKAGYNAGKDLLIALDCAASA 245 + L ++ G D+ + L AAS Sbjct: 264 VKLATEALRAVQLTPGTDVCLGLRMAAST 292 >gnl|CDD|162607 TIGR01927, menC_gamma/gm+, o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. Length = 307 Score = 32.5 bits (74), Expect = 0.22 Identities = 11/39 (28%), Positives = 19/39 (48%) Query: 324 INEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362 A++IKP IGS ++ + +KA G ++ S Sbjct: 225 YGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFS 263 >gnl|CDD|179938 PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional. Length = 322 Score = 31.7 bits (73), Expect = 0.34 Identities = 13/32 (40%), Positives = 19/32 (59%) Query: 331 AILIKPNQIGSVSETLNTIEKAQMAGYPSIIS 362 AI+IKP GS+ + IE+A G ++IS Sbjct: 233 AIVIKPTLTGSLEKCQELIEQAHALGLRAVIS 264 >gnl|CDD|152360 pfam11925, DUF3443, Protein of unknown function (DUF3443). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG. Length = 369 Score = 30.7 bits (70), Expect = 0.73 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 104 LGANAILGVSLAVS---KAAAQTSNLPLYKYLGG---CSAHILPVPLM 145 LGAN ILG+ L A A ++ Y G C++ +P+ Sbjct: 139 LGANGILGIGLFPQDCGAACATSALNGNYYACPGGNSCTSTTVPLAQQ 186 >gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional. Length = 375 Score = 29.5 bits (67), Expect = 1.9 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%) Query: 22 VDVCLEDGSTGRAMVPSGASTGIHEAFELRDQ------EKRYFGKGVLKAIA 67 V V DG+TGR + GA G++ +R E Y G+GV +A+ Sbjct: 140 VTVTFSDGTTGRYDLVVGAD-GLYSK--VRSLVFPDEPEPEYTGQGVWRAVL 188 >gnl|CDD|183792 PRK12850, groEL, chaperonin GroEL; Reviewed. Length = 544 Score = 29.3 bits (66), Expect = 2.0 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 313 FVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361 FVTNPE++ + + IL+ +I ++ + L +E +G P +I Sbjct: 204 FVTNPEKMRAELEDPY---ILLHEKKISNLQDLLPILEAVVQSGRPLLI 249 >gnl|CDD|150140 pfam09365, DUF2461, Conserved hypothetical protein (DUF2461). Members of this family are widely (though sparsely) distributed bacterial proteins, about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. Length = 212 Score = 27.9 bits (63), Expect = 5.6 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%) Query: 173 IREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTA 213 IR+AI E F + + L KGY + + LK A Sbjct: 125 IRQAIDDNPEEFKKILEALSFKGYFGVLEGDK-----LKRA 160 >gnl|CDD|185337 PRK15440, PRK15440, L-rhamnonate dehydratase; Provisional. Length = 394 Score = 27.8 bits (62), Expect = 6.3 Identities = 12/28 (42%), Positives = 15/28 (53%) Query: 107 NAILGVSLAVSKAAAQTSNLPLYKYLGG 134 N I V LA+ + LP+YK LGG Sbjct: 123 NTISCVDLALWDLLGKVRGLPVYKLLGG 150 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 27.2 bits (61), Expect = 7.6 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 16/58 (27%) Query: 160 FQEFMIMPVGAENIREAIRMG------AEVFHTLKK-------ELKSKGYSTNVGDEG 204 FQ+ + +I + IR+G E+ ++ E K GY T VG+ G Sbjct: 415 FQDAGLF---NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG 469 >gnl|CDD|183791 PRK12849, groEL, chaperonin GroEL; Reviewed. Length = 542 Score = 27.1 bits (61), Expect = 8.5 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 313 FVTNPERLHKGINEEVANA-ILIKPNQIGSVSETLNTIEKAQMAGYPSII 361 FVT+PER+ + + IL+ +I S+ + L +EK +G P +I Sbjct: 203 FVTDPERMEA----VLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLI 248 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.135 0.382 Gapped Lambda K H 0.267 0.0711 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,878,214 Number of extensions: 453627 Number of successful extensions: 897 Number of sequences better than 10.0: 1 Number of HSP's gapped: 876 Number of HSP's successfully gapped: 30 Length of query: 424 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 328 Effective length of database: 3,920,105 Effective search space: 1285794440 Effective search space used: 1285794440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.2 bits)