RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 541 bits (1395), Expect = e-154
Identities = 218/441 (49%), Positives = 288/441 (65%), Gaps = 25/441 (5%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
+ I DI+ARE++DSRG+PTIEVDV E G RA VPSGASTGI+EA ELRD++ RY G
Sbjct: 2 VVIKDIVAREILDSRGNPTIEVDVSTEGG-VFRAAVPSGASTGIYEALELRDKDPKRYLG 60
Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMID-LDGTPN-----KSRLGANAILGVS 113
KGVL A+ V EI+ ALLG D DQ ID +M++ LDGT N KS+LGANAILGVS
Sbjct: 61 KGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAILGVS 120
Query: 114 LAVSKAAAQTSNLPLYKYLGGCSAH-----ILPVPLMNILNGGIHADNALDFQEFMIMPV 168
+A +A A + LPLYKY+ + ++PVP N++NGG HA N L QEF+I PV
Sbjct: 121 IACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFLIAPV 180
Query: 169 GAENIREAIRMGAEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEK 226
GA NIREAIR G+E +H LK +K+K +TNVGDEGGF+PN+ TA+ AL+L+ +I+
Sbjct: 181 GAPNIREAIRYGSETYHHLKNVIKNKYGLDATNVGDEGGFAPNVATAEEALNLLVEAIKA 240
Query: 227 AGYNAGKDLLIALDCAASAFFKKE--KYILKGENLELQPN------EMASYLANLVDQYP 278
AGY + IA D AAS F+K++ KY L + + ++ + +YP
Sbjct: 241 AGYEG--KIKIAFDAAASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP 298
Query: 279 IYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQ 338
I S+ED +DD+ + T +G Q++GDD+ VTN R+ K + ++ N +L+K NQ
Sbjct: 299 IISVEDPFDQDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQ 358
Query: 339 IGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAK 398
IGSV+E + AQ +G+ +SHRSGETED IADL V CGQIK+GS RS+R+ K
Sbjct: 359 IGSVTEAIEACLLAQKSGWGVQVSHRSGETEDSFIADLVVGLRCGQIKSGSPCRSERLCK 418
Query: 399 YNQLIRIEESLGKQAKFAGRS 419
YNQL+RIEESLG +AG S
Sbjct: 419 YNQLMRIEESLGADCVYAGES 439
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A
Length = 431
Score = 524 bits (1352), Expect = e-149
Identities = 247/425 (58%), Positives = 308/425 (72%), Gaps = 6/425 (1%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
I II RE+IDSRG+PT+E +V LE G G A PSGASTG EA ELRD +K R+ GKG
Sbjct: 3 IVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKG 62
Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121
V KA+A VN I AL+G DA+DQ IDKIMIDLDGT NKS+ GANAIL VSLA +K
Sbjct: 63 VTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKXXX 122
Query: 122 QTSNLPLYKYLGGC----SAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177
+PLY+++ + +PVP+MNI+NGG HADN +D QEFMI PVGA+ ++EAI
Sbjct: 123 XXKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAI 182
Query: 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237
RMG+EVFH L K LK+KG +T VGDEGG++PNL + AL +IA +++ AGY GKD+ +
Sbjct: 183 RMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITL 242
Query: 238 ALDCAASAFFKKEKYILKG-ENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKI 296
A+DCAAS F+K KY+L G N E +L L QYPI SIEDG+ E DW G+
Sbjct: 243 AMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAY 302
Query: 297 LTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAG 356
T +G QLVGDDLFVTN + L +GI + +AN+ILIK NQIGS++ETL I+ A+ AG
Sbjct: 303 QTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAG 362
Query: 357 YPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFA 416
Y ++ISHRSGETED TIADLAV T GQIKTGS++RSDR+AKYNQLIRIEE+LG++A +
Sbjct: 363 YTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYN 422
Query: 417 GRSIL 421
GR +
Sbjct: 423 GRKEI 427
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 509 bits (1311), Expect = e-145
Identities = 243/424 (57%), Positives = 307/424 (72%), Gaps = 7/424 (1%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
I D+ AREV+DSRG+PT+EV+V E G+ GR MVPSGASTG HEA ELRD +K RY G G
Sbjct: 14 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLG 73
Query: 62 VLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAA 121
KA+ VN+ I A++G D RDQ ID+ MI LDGTPNK +LGANAILGVS+AV++AAA
Sbjct: 74 TQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAA 133
Query: 122 QTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA 181
+PLY YLGG + +LP P+MNI+NGG H+D + FQEFMI+PVGA +EA+R GA
Sbjct: 134 DYLEIPLYSYLGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMILPVGAPTFKEALRYGA 193
Query: 182 EVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDC 241
E+FH LKK LKS+G T VGDEGGF+P + + ++ I +IE AGY GKD+ + DC
Sbjct: 194 EIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGKDVFLGFDC 253
Query: 242 AASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWK 295
A+S F+ KE+ + E E YL LV++YPI +IEDGM E+DW GWK
Sbjct: 254 ASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWK 313
Query: 296 ILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMA 355
LT ++G QLVGDD FVTN + L +GI E AN+ILIK NQIG+++ET IE A+ A
Sbjct: 314 ALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEA 373
Query: 356 GYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKF 415
GY +++SHRSGETED TIAD+AVATN GQIKTGSL+R+DRIAKYNQL+RIE+ LG+ A++
Sbjct: 374 GYTAVVSHRSGETEDSTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDQLGEVAEY 433
Query: 416 AGRS 419
G
Sbjct: 434 RGLK 437
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
genomics, NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 489 bits (1261), Expect = e-139
Identities = 247/421 (58%), Positives = 314/421 (74%), Gaps = 9/421 (2%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60
I DI+AREVIDSRG+PT+EV+V + G A+VPSGASTG HEA ELRD+EKR+ GK
Sbjct: 9 FEIKDIVAREVIDSRGNPTVEVEVITKGNGYGSAIVPSGASTGTHEALELRDKEKRFGGK 68
Query: 61 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120
GVL A+ VN IR +LG DAR Q ID IMI+LDGTPNKSRLGANAIL VSLAV+KAA
Sbjct: 69 GVLMAVENVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAA 128
Query: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
A T+ +PLYKYLGG +++++PVP+MN++NGG HA N LD QEFMIMPVGA +I EA+RMG
Sbjct: 129 AATAKIPLYKYLGGFNSYVMPVPMMNVINGGKHAGNDLDLQEFMIMPVGATSISEAVRMG 188
Query: 181 AEVFHTLKKELKSK--GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIA 238
+EV+H LK + K + NVGDEGGF+P LKT+ ALDL+ S++KAGY +++ A
Sbjct: 189 SEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVKKAGY--EDEVVFA 246
Query: 239 LDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILT 298
LD AAS F+K Y ++G+ L E+ Y LVD+YPI SIED E+D+ G+ ++T
Sbjct: 247 LDAAASEFYKDGYYYVEGKK--LTREELLDYYKALVDEYPIVSIEDPFHEEDFEGFAMIT 304
Query: 299 NKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358
++ Q+VGDDLFVTN ERL KGI + ANA+L+K NQIG++SE ++ + A GY
Sbjct: 305 KELD--IQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYG 362
Query: 359 SIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGR 418
++SHRSGETED TIADL+VA N GQIKTG+ AR +R AKYNQLIRIE+ LG +K+AGR
Sbjct: 363 VVVSHRSGETEDTTIADLSVALNSGQIKTGAPARGERTAKYNQLIRIEQELGL-SKYAGR 421
Query: 419 S 419
+
Sbjct: 422 N 422
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B*
Length = 436
Score = 483 bits (1244), Expect = e-137
Identities = 216/433 (49%), Positives = 290/433 (66%), Gaps = 21/433 (4%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
++ + AR V DSRG+PT+EV++ E G R++VPSGASTG+HEA E+RD +K ++ GKG
Sbjct: 2 VSKVYARSVYDSRGNPTVEVELTTEKGV-FRSIVPSGASTGVHEALEMRDGDKSKWMGKG 60
Query: 62 VLKAIAFVNDEIRTALL--GCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
VL A+ VND I A + D +DQ +D +I LDGT NKS+LGANAILGVSLA S+A
Sbjct: 61 VLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLISLDGTANKSKLGANAILGVSLAASRA 120
Query: 120 AAQTSNLPLYKYLGG-----CSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIR 174
AA N+PLYK+L S ++LPVP +N+LNGG HA AL QEFMI P GA+
Sbjct: 121 AAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFA 180
Query: 175 EAIRMGAEVFHTLKKELKSKG--YSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAG 232
EA+R+G+EV+H LK K + + NVGDEGG +PN++TA+ ALDLI ++I+ AG++
Sbjct: 181 EALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHD-- 238
Query: 233 KDLLIALDCAASAFFKKEKYILKGENLE------LQPNEMASYLANLVDQYPIYSIEDGM 286
+ I LDCA+S FFK KY L +N L ++A +L+ +YPI SIED
Sbjct: 239 GKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298
Query: 287 SEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETL 346
+EDDW W G Q+V DDL VTNP+R+ I ++ A+A+L+K NQIG++SE++
Sbjct: 299 AEDDWEAWSHFFKTAG--IQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESI 356
Query: 347 NTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIE 406
+ + AG+ ++SHRSGETED IADL V GQIKTG+ ARS+R+AK NQL+RIE
Sbjct: 357 KAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQLLRIE 416
Query: 407 ESLGKQAKFAGRS 419
E LG A FAG +
Sbjct: 417 EELGDNAVFAGEN 429
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 1pdz_A 1pdy_A
Length = 439
Score = 479 bits (1235), Expect = e-136
Identities = 220/430 (51%), Positives = 291/430 (67%), Gaps = 18/430 (4%)
Query: 3 INDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFGKG 61
I I ARE++DSRG+PT+EVD+ G RA VPSGASTGI+EA ELRD +K RY GKG
Sbjct: 2 IEKIWAREILDSRGNPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKG 60
Query: 62 VLKAIAFVNDEIRTALL--GCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
VLKA+ +N I AL+ G +Q +D +M++LDGT NKS+ GANAILGVSLAV KA
Sbjct: 61 VLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKA 120
Query: 120 AAQTSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176
A LPLY++ L G S ILPVP N++NGG HA N L QEFMI+PVGAE+ R+A
Sbjct: 121 GAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDA 180
Query: 177 IRMGAEVFHTLKKELKSKGY--STNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234
+R+GAEV+HTLK +K K +TNVGDEGGF+PN+ AL+L+ +I+KAGY +
Sbjct: 181 MRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYT--EK 238
Query: 235 LLIALDCAASAFFKKEKYILKG-----ENLELQPNEMASYLANLVDQYPIYSIEDGMSED 289
++I +D AAS F++ KY L + + +++ + + V YP+ SIED +D
Sbjct: 239 IVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQD 298
Query: 290 DWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTI 349
DW W T +G Q+VGDDL VTNP+R+ + + E+ N +L+K NQIGSV+E +
Sbjct: 299 DWAAWSKFTANVG--IQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQAC 356
Query: 350 EKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESL 409
+ AQ G+ ++SHRSGETED IADL V GQIKTG+ RS+R+AKYNQL+RIEE L
Sbjct: 357 KLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEEL 416
Query: 410 GKQAKFAGRS 419
G +A+FAG +
Sbjct: 417 GDEARFAGHN 426
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 463 bits (1193), Expect = e-131
Identities = 196/427 (45%), Positives = 269/427 (62%), Gaps = 10/427 (2%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEK-RYFG 59
M I + REV+DSRG+PT+EV+V E G R+ VPSGASTG++EA ELRD +K RY G
Sbjct: 4 MTIQKVHGREVLDSRGNPTVEVEVTTEKGV-FRSAVPSGASTGVYEACELRDGDKKRYVG 62
Query: 60 KGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKA 119
KG L+A+ VN+ I AL+G D Q +D +M+ LDGTPNK +LGANAILG S+A+SK
Sbjct: 63 KGCLQAVKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKX 122
Query: 120 AAQTSNLPLYKY---LGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREA 176
+PLY+Y L G LPVP N++NGG HA NAL FQEFMI PV A + EA
Sbjct: 123 XXXXKGVPLYRYLASLAGTKELRLPVPCFNVINGGKHAGNALPFQEFMIAPVKATSFSEA 182
Query: 177 IRMGAEVFHTLKKELKSKGY--STNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKD 234
+RMG+EV+H+L+ +K K + NVGDEGGF+P +K + L ++ +IE+AG+
Sbjct: 183 LRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILMEAIEEAGHRGKFA 242
Query: 235 LLIALDCAASAFFKKEKYILKGENL---ELQPNEMASYLANLVDQYPIYSIEDGMSEDDW 291
+ + + + KK++Y L ++ + ++ YPI SIED +DD+
Sbjct: 243 ICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPIVSIEDPYDQDDF 302
Query: 292 HGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEK 351
G+ +T + Q+VGDDL VTN ER+ I ++ N++L+K NQIG++SE + + +
Sbjct: 303 AGFAGITEALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKL 362
Query: 352 AQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGK 411
G+ ++SHRSGETED IADL VA GQIKTG+ R +R AK NQL+RIEE LG
Sbjct: 363 CMENGWSVMVSHRSGETEDTYIADLVVALGSGQIKTGAPCRGERTAKLNQLLRIEEELGA 422
Query: 412 QAKFAGR 418
AKF
Sbjct: 423 HAKFGFP 429
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A
{Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB:
1kd0_A*
Length = 413
Score = 252 bits (646), Expect = 8e-68
Identities = 70/415 (16%), Positives = 133/415 (32%), Gaps = 69/415 (16%)
Query: 15 RGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIR 74
+ +I V + LEDG G A + R I + EI
Sbjct: 48 QKGESISVLLVLEDGQVAH---------GDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIA 98
Query: 75 TALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYKYLG 133
L+G + + + + D AI G++ A+ A A+T + + + +
Sbjct: 99 PKLIGREITN---FKPMAEEFDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIR 155
Query: 134 ---GCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVF-HTLKK 189
A I VP+ G + +D + I A+V H L
Sbjct: 156 DEYNPGAEINAVPVF--AQSGDDRYDNVD---------------KMIIKEADVLPHALIN 198
Query: 190 ELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKK 249
++ K +G +G + + + + I K + +D
Sbjct: 199 NVEEK-----LGLKG------EKLLEYVKWLRDRIIKLRVREDYAPIFHIDV-------- 239
Query: 250 EKYILKGENLELQPNEMASYLANLVDQYPIY--SIEDGMSEDDWHGWKILTNKI------ 301
Y G ++ MA Y+ L + + IE M +D +
Sbjct: 240 --YGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDG 297
Query: 302 -GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360
G + +LV D+ T E + + + + + IK +G V+ + I + G +
Sbjct: 298 RGVDAELVADEWCNT-VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAY 356
Query: 361 ISHRSGETEDHTIA--DLAVATNCGQI--KTGSLARSDRIAKYNQLIRIEESLGK 411
ET ++ +A Q+ K G + N++ R+ +G+
Sbjct: 357 CGGTCNETNRSAEVTTNIGMACGARQVLAKPGMGVDEGMMIVKNEMNRVLALVGR 411
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1
PDB: 1kkr_A*
Length = 413
Score = 244 bits (625), Expect = 2e-65
Identities = 68/414 (16%), Positives = 128/414 (30%), Gaps = 67/414 (16%)
Query: 15 RGSPTIEVDVCLEDGSTGR---AMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVND 71
+ + V + LE+G+ A V + G F I F+ND
Sbjct: 48 QAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEH------------FIPFLND 95
Query: 72 EIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAI-LGVSLAVSKAAAQTSNLPLYK 130
I+ L G D D L A+ G+S A+ A A S +
Sbjct: 96 HIKPLLEGRDVDA---FLPNARFFDKLRIDGNLLHTAVRYGLSQALLDATALASGRLKTE 152
Query: 131 YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKE 190
+ LP I G D+ + MI+ + + H L
Sbjct: 153 VVCD--EWQLPCVPEAIPLFGQSGDDRYIAVDKMIL-----------KGVDVLPHALINN 199
Query: 191 LKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE 250
++ K +G +G + +++ I + + +D
Sbjct: 200 VEEK-----LGFKGEK------LREYVRWLSDRILSLRSSPRYHPTLHIDV--------- 239
Query: 251 KYILKGENLELQPNEMASYLANLVDQYPIY--SIEDGM----SEDDWHGWKILTNKI--- 301
Y G ++ P A Y+A+L + IE + D +T ++
Sbjct: 240 -YGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRL 298
Query: 302 GSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
GS ++V D+ + + + + + + IK +G + ++ + G +
Sbjct: 299 GSGVKIVADE-WCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQ 357
Query: 362 SHRSGETEDHTIAD--LAVATNCGQI--KTGSLARSDRIAKYNQLIRIEESLGK 411
ETE +A+A ++ K G +N++ R L
Sbjct: 358 GGTCNETEISARTCVHVALAARPMRMLIKPGMGFDEGLNIVFNEMNRTIALLQT 411
>1ec7_A Glucarate dehydratase; lyase; 1.90A {Escherichia coli} SCOP:
c.1.11.2 d.54.1.1 PDB: 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A*
1jct_A* 1bqg_A
Length = 446
Score = 109 bits (274), Expect = 9e-25
Identities = 38/361 (10%), Positives = 96/361 (26%), Gaps = 55/361 (15%)
Query: 41 STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88
+G H F ++D G+ + K + ++ ++G + +
Sbjct: 28 LSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTL----EDAIPLVVGKTLGEYKNV 83
Query: 89 DKIMIDLDGTPNKSRLGA---------NAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139
++ + + G + + G+ A+ Q + + LG
Sbjct: 84 LTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRS 143
Query: 140 LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGA-EVFHTLKKELKSKGYST 198
L + G L +Q +R M V + + G++
Sbjct: 144 EVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFND 203
Query: 199 NVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGEN 258
G + + + I A I LD +
Sbjct: 204 FKLKGGVLAG-----EEEAESIV-----ALAQRFPQARITLDPNGAWSL----------- 242
Query: 259 LELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPE 318
A + + Y+ + +E + G +++ + ++ T+
Sbjct: 243 ------NEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWR 296
Query: 319 RLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAV 378
++ + + I + ++ ++ + G SH + + V
Sbjct: 297 QMGHTL-SLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLT-WGSHSNNHFDISLAMFTHV 354
Query: 379 A 379
A
Sbjct: 355 A 355
>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein
structure initiative, PS nysgrc; 1.85A {Chromohalobacter
salexigens} PDB: 3nfu_A
Length = 450
Score = 57.4 bits (138), Expect = 5e-09
Identities = 47/362 (12%), Positives = 96/362 (26%), Gaps = 56/362 (15%)
Query: 41 STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88
+G HE + L D+ +G+L + ++ R+ + G + +
Sbjct: 25 LSGGHEPWFIRCVLVLEDESGNRGVGEIPSSEGILNGL----EKCRSLVEGARVNEVKQV 80
Query: 89 DKIMIDLDGTPNKSRLG---------ANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139
L G + I + A+ Q +P+ LG
Sbjct: 81 LSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQR 140
Query: 140 LPVPLMNILNGGIHAD-NALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSK-GYS 197
V + L D L + + +R M E L + + G+
Sbjct: 141 DEVEALGYLFLLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFK 200
Query: 198 TNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGE 257
G + D I +A + A + +ALD +
Sbjct: 201 DFKLKGGVLRG-----EEEADCI-----RALHEAFPEARLALDPNGAWKL---------- 240
Query: 258 NLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNP 317
+ A + + Y+ + E + G + + ++ T+
Sbjct: 241 -------DEAVRVLEPIKHLLSYAEDPCGQEGGFSGRETMAEFKKRTGLPTATNMIATDY 293
Query: 318 ERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLA 377
++L + + L + + E G SH + +
Sbjct: 294 KQLQYAVQLNSVDIPLADCHFWTM-QGAVAVGELCNEWGMT-WGSHSNNHFDISLAMMTH 351
Query: 378 VA 379
VA
Sbjct: 352 VA 353
>3n6h_A Mandelate racemase/muconate lactonizing protein; structural
genomics, protein structure initiative; 2.30A
{Actinobacillus succinogenes} PDB: 3n6j_A
Length = 455
Score = 51.6 bits (123), Expect = 3e-07
Identities = 47/360 (13%), Positives = 93/360 (25%), Gaps = 53/360 (14%)
Query: 41 STGIHEAF------ELRDQEKR------YFGKGVLKAIAFVNDEIRTALLGCDARDQLLI 88
G H + L D G + A+ E ++G I
Sbjct: 29 VGGAHSPYFTRNIVILTDNSGHTGVGEAPGGATIENALT----EAIPHVVGRPISILNKI 84
Query: 89 DKIMIDLDGTPNKSRLG---------ANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHI 139
M + + G NA+ + A+ Q +P+ + LG
Sbjct: 85 VNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRD 144
Query: 140 LPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTN 199
V ++ + D D + E + + ++ SK
Sbjct: 145 -EVTVLGY-LFYVGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASK----- 197
Query: 200 VGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYILKGENL 259
D GF + K K G G + + F + I N
Sbjct: 198 --DRYGFK-DFKL-------------KGGVFEGSKEIDTVIELKKHF--PDARITLDPNG 239
Query: 260 ELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPER 319
+E A L ++ Y+ + + E+ + G +I+ ++ TN
Sbjct: 240 CWSLDE-AIQLCKGLNDVLTYAEDPCIGENGYSGREIMAEFRRRTGIPTATNMIATNWRE 298
Query: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVA 379
+ + I + +++ + G H + + V
Sbjct: 299 MCH-AIMLQSVDIPLADPHFWTLTGASRVAQLCNEWGLT-WGCHSNNHFDISLAMFSHVG 356
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 49.8 bits (118), Expect = 1e-06
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 64/311 (20%)
Query: 65 AIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTS 124
A V+ L+G D R+ L+ + M + L I + LA+ +
Sbjct: 89 ACWLVHQHFERFLIGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVR 148
Query: 125 NLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEF-MIMPVGAENIREAIRMGAEV 183
N P+Y+ +GG + L A A+ F + +P ++ E +R E
Sbjct: 149 NEPVYRLIGGATKERLD---FYCTGPEPTAAKAMGFWGGKVPLPFCPDDGHEGLRKNVEF 205
Query: 184 FHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAA 243
+ K G D I +DC
Sbjct: 206 ----------------------------------------LRKHREAVGPDFPIMVDCYM 225
Query: 244 SAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGS 303
S L I E+ +S DD G+ ++ +
Sbjct: 226 SLNV-----------------SYTIELVKACLDLNINWWEECLSPDDTDGFALIKRAHPT 268
Query: 304 NCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363
G+ + + K + + I +G ++E L A P ++ H
Sbjct: 269 VKFTTGEHEY--SRYGFRKLVEGRNLDIIQPDVMWLGGLTELLKVAALAAAYDVP-VVPH 325
Query: 364 RSGETEDHTIA 374
SG H
Sbjct: 326 ASGPYSYHFQI 336
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 48.0 bits (114), Expect = 4e-06
Identities = 72/481 (14%), Positives = 127/481 (26%), Gaps = 215/481 (44%)
Query: 4 NDII-----AREVIDSRGSPTIEVDVCLEDGSTGRA---MVPSGASTGIHEAF-ELRDQE 54
++I AR + G A + G + F ELRD
Sbjct: 120 KELIKNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLVAIFGGQGN-TDDYFEELRDLY 177
Query: 55 KRYFGKGVLKAIAFVNDEIRTA--LLGCDARDQLLIDKIM---IDL-------DGTPNKS 102
+ Y V D I+ + L R L +K+ +++ TP+K
Sbjct: 178 QTYHV--------LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 103 RLGANAILGVSLAVSKAAAQTSNLPL--------Y----KYLGGCSAHILPVPLMNILNG 150
L +S+ +S PL Y K LG + P L + L G
Sbjct: 230 YL-------LSIPIS--------CPLIGVIQLAHYVVTAKLLG-FT----PGELRSYLKG 269
Query: 151 ------GI-------HADNALDFQEFMIMPVGAENIREAIRM----GAEVFHTL-KKELK 192
G+ D ++ F ++R+AI + G + L
Sbjct: 270 ATGHSQGLVTAVAIAETD---SWESFF------VSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 193 SKGYSTNV-GDEGGFSPNLKTADSALDLIANSIEKAGYNA----GKDLLIALDCAASAF- 246
++ +EG SP L ++ + + + + K N+ GK + I+L A
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--NSHLPAGKQVEISLVNGAKNLV 378
Query: 247 ------------------------------FKKEK-----------------YI------ 253
F + K +
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 254 ----LKGENLELQPNEMASYLANLVDQYPIYSIEDG-----MSED--------------D 290
L N+ ++ P+Y DG +S
Sbjct: 439 INKDLVKNNVSFNAKDIQ---------IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 291 W---------H----------GWKILTNKI--GSNCQ--LVGDDLFVTNPERLHKGINEE 327
W H G +LT++ G+ + + G L +++
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT---------LDINPDDD 540
Query: 328 V 328
Sbjct: 541 Y 541
Score = 46.9 bits (111), Expect = 9e-06
Identities = 79/466 (16%), Positives = 139/466 (29%), Gaps = 163/466 (34%)
Query: 45 HEAFELRDQEKRYFGKGVLKAI--AFVNDEIRTALLGCDARDQLLIDKIMIDLDGT-PNK 101
+ + + + F + VL F E L G D L K++ + D T
Sbjct: 67 YVSSLVEPSKVGQFDQ-VLNLCLTEF---E-NCYLEGNDI--HALAAKLLQENDTTLVKT 119
Query: 102 SRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNG-GIHADNALD- 159
L N I +A ++++ L++ + L+ I G G N D
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA-LFR-----AVGEGNAQLVAIFGGQG----NTDDY 169
Query: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDL 219
F+E +++ T Y VGD +K + L
Sbjct: 170 FEEL-----------------RDLYQT---------YHVLVGD---L---IKFSAETLSE 197
Query: 220 IANSIEKAG--YNAGKDLLIAL-------DCA--ASA--------FFKKEKYILKGENLE 260
+ + A + G ++L L D S + Y++ + L
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 261 LQPNEMASYLANLVDQYPIYSIEDGMSE-----------DDWHGWKILTNK-------IG 302
P E+ SYL G S+ D W + + K IG
Sbjct: 258 FTPGELRSYLKGAT----------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 303 SNCQ-----------LVGDD-----------LFVTNPER--LHKGINEEVANAILIKPNQ 338
C ++ D L ++N + + +N+ N+ L Q
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQ 365
Query: 339 IGSVSETL-NTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNCGQIKTGSLAR---SD 394
+ +S L N + ++G P S + T+ + Q +R S+
Sbjct: 366 V-EIS--LVNGAKNLVVSGPPQ--SLYG---LNLTLRKAKAPSGLDQ------SRIPFSE 411
Query: 395 RIAKY-NQLI----------------RIEESLGKQ-AKFAGRSILI 422
R K+ N+ + I + L K F + I I
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural
genomics, NYSGXRC, target 9284B, enolase family, PSI-2;
2.60A {Bordetella bronchiseptica}
Length = 392
Score = 47.0 bits (111), Expect = 8e-06
Identities = 49/356 (13%), Positives = 81/356 (22%), Gaps = 85/356 (23%)
Query: 7 IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66
+ + R P + V+V DG+ G V E
Sbjct: 30 TSFGTMHDR--PAVLVEVEDSDGAVGWGEVWCNFPACGAEHRA----------------- 70
Query: 67 AFVNDEIRTALLGCDARDQL----LIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQ 122
V + L D ++ L + A AI G+ +A+ AA+
Sbjct: 71 RLVETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAAR 130
Query: 123 TSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAE 182
+ PL+ +LGG I + GI+ +N D R AE
Sbjct: 131 RAGQPLWAWLGGSGDRI------GVYASGINPENPED---------------VVARKAAE 169
Query: 183 VFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCA 242
+ K ++ D A D+ G + D
Sbjct: 170 GYRAFKLKVG--------------------FDDARDVRN--ALHVRELLGAATPLMADA- 206
Query: 243 ASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIG 302
N L + E ++ W L
Sbjct: 207 ---------------NQGWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAELAQAAP 251
Query: 303 SNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYP 358
+ + + + + G S L AG
Sbjct: 252 ---MPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLR 304
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-
erythromohydroxamate, unknown function; HET: EHM; 1.70A
{Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Length = 441
Score = 45.8 bits (107), Expect = 2e-05
Identities = 51/325 (15%), Positives = 91/325 (28%), Gaps = 23/325 (7%)
Query: 65 AIAFVNDEIRTALLGCDARD-QLLIDKIMIDLDGTPNKSRLGA------NAILGVSLAVS 117
+ ++G + L LG AI V A
Sbjct: 62 VQTAAVAALAEHVVGLSVDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAW 121
Query: 118 KAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAI 177
AA+ +N PL++++ + L + + P A I
Sbjct: 122 DLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALTRDEALAILRDAQPQRAARTATLI 181
Query: 178 RMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLI 237
G + T L GYS ++ A A+ +I+ +D +
Sbjct: 182 EQGYPAYTTSPGWL---GYSDE--------KLVRLAKEAVADGFRTIKLKVGANVQDDIR 230
Query: 238 ALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKIL 297
A +A + + + ++ I IE+ S DD G +
Sbjct: 231 RCRLARAAIGPDIAMAVDANQRWDVGPAIDWM--RQLAEFDIAWIEEPTSPDDVLGHAAI 288
Query: 298 TNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGY 357
I G+ + + + I I ++G V+E L + A G
Sbjct: 289 RQGITPVPVSTGEHTQNRVVFKQL--LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGV 346
Query: 358 PSIISHRSGETEDHTIADLAVATNC 382
+ H G + LA+A
Sbjct: 347 R-VFPHAGGVGLCELVQHLAMADFV 370
>3p0w_A Mandelate racemase/muconate lactonizing protein; structural
genomics, PSI-2, protein structure initiative; HET: GKR;
1.71A {Ralstonia pickettii} PDB: 3nxl_A
Length = 470
Score = 42.9 bits (100), Expect = 1e-04
Identities = 50/365 (13%), Positives = 93/365 (25%), Gaps = 41/365 (11%)
Query: 22 VDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCD 81
V + G TG VP G GI +A L G+ + V IR AL G
Sbjct: 41 VILKDNAGRTGVGEVPGGE--GIRQA--LERVIPLVVGQSIG-RTNGVLSSIRRALAGGG 95
Query: 82 ARDQLLIDKIMIDLD------GTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYKYLGGC 135
+ + N I V A+ Q +P+ + LG
Sbjct: 96 NAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAG 155
Query: 136 SAH-ILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSK 194
P+ G + + EA A + + +
Sbjct: 156 QQRDSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERY 215
Query: 195 GYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKEKYIL 254
G++ G ++ I A + LD +
Sbjct: 216 GFADFKLKGGVMPG-----AEEMEAI-----AAIKARFPHARVTLDPNGAWSLN------ 259
Query: 255 KGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFV 314
A L Y+ + E + G +++ + ++
Sbjct: 260 -----------EAIALCKGQGHLVAYAEDPCGPEAGYSGREVMAEFKRATGIPTATNMIA 308
Query: 315 TNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIA 374
T+ ++ + + L P+ + ++ + G SH + +
Sbjct: 309 TDWRQMGHAVQLHAVDIPLADPHFWT-MQGSVRVAQLCDEWGLT-WGSHSNNHFDVSLAM 366
Query: 375 DLAVA 379
VA
Sbjct: 367 FTHVA 371
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET:
RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2
d.54.1.1 PDB: 1mdr_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Length = 359
Score = 38.4 bits (88), Expect = 0.004
Identities = 54/386 (13%), Positives = 115/386 (29%), Gaps = 93/386 (24%)
Query: 1 MFINDIIAREV--------IDSRGS----PTIEVDVCLEDGSTGRAMVPSGASTGIHEAF 48
+ I + R V + G+ P + +D+ G G + + +
Sbjct: 4 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFA---------- 53
Query: 49 ELRDQEKRYFGKGVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANA 108
+ LK++ + D++ ++ + ++ ++ + L A
Sbjct: 54 ---------YTPVALKSLKQLLDDMAAMIVNEPL-APVSLEAMLAKRFCLAGYTGLIRMA 103
Query: 109 ILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPV 168
G+ +A A + PL K LG + + ++ + + A+ E V
Sbjct: 104 AAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAV 163
Query: 169 GAENIREAIRMGAEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAG 228
A+ V ++++ +
Sbjct: 164 KTRIGYPALDQDLAVVRSIRQAV------------------------------------- 186
Query: 229 YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSE 288
G D I +D S A + + Q + IE+ +
Sbjct: 187 ---GDDFGIMVDYNQS-----------------LDVPAAIKRSQALQQEGVTWIEEPTLQ 226
Query: 289 DDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNT 348
D+ G + + +K+ Q+ PE + K ++ + +IG V+ +
Sbjct: 227 HDYEGHQRIQSKLNVPVQM---GENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRA 283
Query: 349 IEKAQMAGYPSIISHRSGETEDHTIA 374
AQ G P + SH E H +A
Sbjct: 284 SALAQQFGIP-MSSHLFQEISAHLLA 308
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure
initiative; 1.60A {Desulfotalea psychrophila LSV54}
Length = 377
Score = 36.5 bits (83), Expect = 0.011
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 6/135 (4%)
Query: 7 IAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAI 66
+R V+ S+ + + +D DG G+ V + + E +E + +
Sbjct: 22 TSRGVLTSKPTWFVRLD---IDGHGGQGEVSLIPGLSL-DPEEQIGRELDLLARRLRAEE 77
Query: 67 AFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGAN--AILGVSLAVSKAAAQTS 124
+ G D D + + + + S G + +A+ +
Sbjct: 78 PIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGR 137
Query: 125 NLPLYKYLGGCSAHI 139
I
Sbjct: 138 QEWFASDFTRGEKRI 152
>3n4f_A Mandelate racemase/muconate lactonizing protein; structural
genomics, protein structure INI NEW YORK structural
genomix research consortium; HET: MSE; 1.88A
{Geobacillus SP}
Length = 392
Score = 35.9 bits (82), Expect = 0.018
Identities = 38/293 (12%), Positives = 74/293 (25%), Gaps = 47/293 (16%)
Query: 71 DEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSNLPLYK 130
E ++G D + D G RL L + V Q P+Y
Sbjct: 66 PEWAEDVIGRRLLD-------LFDDRG-----RLREAYRLQLEYPVLDWLGQRQGKPVYD 113
Query: 131 YLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMGAEVFHTLKKE 190
+ G ++ + ++ D+ E + + E + G K
Sbjct: 114 LVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKG---QRHFK-- 168
Query: 191 LKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAASAFFKKE 250
VG G P + + ++ E AG I +D +
Sbjct: 169 -------IKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGK----IMIDANNAYNL--- 214
Query: 251 KYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGD 310
+ + + +Y +E+ ED+ + ++
Sbjct: 215 --------------NLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIA 260
Query: 311 DLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISH 363
D L + + + G + + EK G H
Sbjct: 261 DGEGLASPHLIEWATRGRVDVLQYDIIWPG-FTHWMELGEKLDAHGLR-SAPH 311
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing
enzyme subgroup, alpha/beta barrel, structural genomics,
isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1
Length = 324
Score = 34.5 bits (78), Expect = 0.043
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 8/118 (6%)
Query: 265 EMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNCQLVGDDLFVTNPERLHKGI 324
E + L+ + +E + D + + + + D L
Sbjct: 187 EGLAARCQLLADLGVAMLEQPLPAQDDAALENFIHPLP-----ICADESCHTRSNLKALK 241
Query: 325 NEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHTIADLAVATNC 382
+ IK ++ G ++E L +A+ G+ ++ T A L +
Sbjct: 242 GR--YEMVNIKLDKTGGLTEALALATEARAQGFS-LMLGCMLCTSRAISAALPLVPQV 296
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus
radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A
2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Length = 375
Score = 31.5 bits (70), Expect = 0.37
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 23/142 (16%)
Query: 6 IIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKA 65
+ V + P + + +G G A A Y + + A
Sbjct: 27 ETSFGVQTHKVVPLLILH---GEGVQGVAEGTMEARPM-------------YREETIAGA 70
Query: 66 IAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAAAQTSN 125
+ + A+LG + + + G A V +A A+T
Sbjct: 71 LDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRM-------ARAMVEMAAWDLWARTLG 123
Query: 126 LPLYKYLGGCSAHILPVPLMNI 147
+PL LGG + + I
Sbjct: 124 VPLGTLLGGHKEQVEVGVSLGI 145
>3c9h_A ABC transporter, substrate binding protein; structural genomics,
MCSG, PSI-2, protein structure initiative; HET: CIT;
1.90A {Agrobacterium tumefaciens str}
Length = 355
Score = 27.9 bits (60), Expect = 4.0
Identities = 10/70 (14%), Positives = 25/70 (35%)
Query: 110 LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVG 169
LG ++ S AA S P + ++ + + + + + EF + G
Sbjct: 230 LGYNILGSYAADWASRHPDVGIVLPKDYTVVMSRIGLVPEAAANPELGRRYLEFFMSKEG 289
Query: 170 AENIREAIRM 179
+ +++
Sbjct: 290 QTIMARQLQI 299
>3nft_A Translocator protein BIPD; virulence, translocation, transport
protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A
2j9t_A* 2izp_A
Length = 303
Score = 27.5 bits (60), Expect = 5.2
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 171 ENIREAIRMGAEVFHTLKKELKS---KGYSTNVGDEGGFSPN---------LKTADSALD 218
++ R A+R A L + L++ G GDEGG P+ + S +D
Sbjct: 79 DDARVAVRGHARAQRNLLERLETELLGGTLDTAGDEGGIQPDPILQGLVDVIGQGKSDID 138
Query: 219 LIANSIEKAG--YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLANLVDQ 276
A +E + + D++ L SA +N+++ ++ + + ++D
Sbjct: 139 AYATIVEGLTKYFQSVADVMSKLQDYISAK--------DDKNMKIDGGKIKALIQQVIDH 190
Query: 277 YPIYSIEDGMSEDDWH 292
P + G W
Sbjct: 191 LPTMQLPKGADIARWR 206
>2v84_A Spermidine/putrescine ABC transporter, periplasmic binding protein;
polyamine binding, syphilis, lipoprotein, transport
protein; HET: MES; 1.78A {Treponema pallidum}
Length = 343
Score = 27.7 bits (60), Expect = 5.4
Identities = 11/68 (16%), Positives = 21/68 (30%)
Query: 110 LGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVG 169
G + A + + + ++ A + V I G + D A F F + P
Sbjct: 225 HGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAH 284
Query: 170 AENIREAI 177
+
Sbjct: 285 YAEFLDTF 292
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport
protein; HET: SPD; 1.80A {Escherichia coli} SCOP:
c.94.1.1 PDB: 1poy_1*
Length = 325
Score = 27.3 bits (59), Expect = 6.4
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 145 MNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
+ I + + AL F++ P A+ + E I
Sbjct: 236 LAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYP 271
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 27.4 bits (59), Expect = 6.8
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 229 YNAGKDLLIALDCAASAFFKKEKYILKGENLELQPNEMASYLAN------LVDQYPIYSI 282
+N G ++ K + + + + A +A ++ P Y
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDT 363
Query: 283 EDGMSEDDW 291
+ + E W
Sbjct: 364 LEAIMETSW 372
>1rh2_A Interferon-alpha 2B; cytokine, anti-viral, immunomodulator, 4 helix
bundle; 2.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1itf_A
2hym_B
Length = 165
Score = 27.1 bits (60), Expect = 6.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 167 PVGAENIREAIRMGAEVFHTLKKELKSKGYS 197
P+ E+ A+R F + LK K YS
Sbjct: 109 PLMNEDSILAVRK---YFQRITLYLKEKKYS 136
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 27.4 bits (59), Expect = 7.2
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 3/122 (2%)
Query: 246 FFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNKIGSNC 305
+ + L P A+ + + +G + +
Sbjct: 77 PDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQALVANAGLTDSFDA 136
Query: 306 QLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRS 365
+ D V P H V + + P ++ VS + A+ G+ R
Sbjct: 137 VISVDAKRVFKP---HPDSYALVEEVLGVTPAEVLFVSSNGFDVGGAKNFGFSVARVARL 193
Query: 366 GE 367
+
Sbjct: 194 SQ 195
>3czt_X Protein S100-B; EF-hand,calcium, zinc, copper, cytoplasm, metal-
binding, nucleus, metal binding protein; 1.40A {Homo
sapiens} PDB: 2h61_A 3d0y_A* 3d10_A* 1mq1_A 1uwo_A
2pru_A 1b4c_A 1dt7_A 1mwn_A 1qlk_A 1sym_A 1xyd_A 1cfp_A
3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 1psb_A
...
Length = 92
Score = 27.0 bits (60), Expect = 9.1
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 144 LMNILNGGIHADNALDFQEFMIM 166
+M L+ D DFQEFM
Sbjct: 57 VMETLD--NDGDGECDFQEFMAF 77
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 26.7 bits (59), Expect = 9.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 313 FVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSIISHRSGETEDHT 372
F+ PE G E + IL+ +I ++ E L +E AG P +I + + E
Sbjct: 203 FINKPE---TGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLII--AEDVEGEA 257
Query: 373 IADLAVATNCGQIK 386
+A L V T G +K
Sbjct: 258 LATLVVNTMRGIVK 271
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.316 0.135 0.382
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,576,152
Number of extensions: 166829
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 608
Number of HSP's successfully gapped: 43
Length of query: 424
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 329
Effective length of database: 3,390,050
Effective search space: 1115326450
Effective search space used: 1115326450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)