BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
(424 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 424
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/424 (100%), Positives = 424/424 (100%)
Query: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60
MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK
Sbjct: 1 MFINDIIAREVIDSRGSPTIEVDVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGK 60
Query: 61 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120
GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA
Sbjct: 61 GVLKAIAFVNDEIRTALLGCDARDQLLIDKIMIDLDGTPNKSRLGANAILGVSLAVSKAA 120
Query: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG
Sbjct: 121 AQTSNLPLYKYLGGCSAHILPVPLMNILNGGIHADNALDFQEFMIMPVGAENIREAIRMG 180
Query: 181 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD 240
AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD
Sbjct: 181 AEVFHTLKKELKSKGYSTNVGDEGGFSPNLKTADSALDLIANSIEKAGYNAGKDLLIALD 240
Query: 241 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300
CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK
Sbjct: 241 CAASAFFKKEKYILKGENLELQPNEMASYLANLVDQYPIYSIEDGMSEDDWHGWKILTNK 300
Query: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360
IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI
Sbjct: 301 IGSNCQLVGDDLFVTNPERLHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSI 360
Query: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI 420
ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI
Sbjct: 361 ISHRSGETEDHTIADLAVATNCGQIKTGSLARSDRIAKYNQLIRIEESLGKQAKFAGRSI 420
Query: 421 LIHQ 424
LIHQ
Sbjct: 421 LIHQ 424
>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 381
Score = 30.8 bits (68), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 320 LHKGINEEVANAILIKPNQIGSVSETLNTIEKAQMAGYPSII 361
+ +GIN A AI I N I S +E +N K+ G+P I+
Sbjct: 127 IREGINSGKAQAIAIPHNNINSFAENINKWRKSGGKGFPWIV 168
>gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 239
Score = 26.6 bits (57), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYS------TNVGDEG---GF---- 206
F +I ENI E + + + L KE K +S GDE GF
Sbjct: 49 FHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIG 108
Query: 207 ----SPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS 244
+PN K S N +KA G DL+I +CA++
Sbjct: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASA 150
>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 890
Score = 26.2 bits (56), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 23 DVCLEDGSTGRAMVPSGASTGIHEAFELRDQEKRYFGKGVLKAIAFVN 70
+V + D TGR M S G H+A E +++ K L +I F N
Sbjct: 322 EVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQN 369
>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 370 DHTIADLAVATNCGQIKTGSLARSDRIAK-YNQL 402
+H I DL + T C ++K + R+++ +N+L
Sbjct: 491 EHAIEDLFIGTACERVKKAWRQKHSRVSELWNEL 524
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 378 VATNCGQIKTGSLARSDRIAKY 399
V CG+I G L SDR A Y
Sbjct: 777 VHLRCGKIARGGLRWSDRAADY 798
>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
peptide protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 288
Score = 24.3 bits (51), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 214 DSALDLIANSIEKAGYNAGKDL--LIALDCAASAFFKKEKYILKGENLELQPNEMASYLA 271
D +DL+ ++I+ A +A K L L CA +K ILK N L N+ +Y+A
Sbjct: 216 DGKIDLVKSNID-AIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIA 274
Query: 272 NLVDQYPI 279
+D PI
Sbjct: 275 AHIDGVPI 282
>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 316
Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 179 MGAEVFHTLKKELKS 193
MG EVFH ++K LK+
Sbjct: 203 MGVEVFHDMQKGLKN 217
>gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 278
Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 97 GTPNKSRL-----GANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGG 151
G N+ RL G + GV + +T+ + L Y G A+IL +++ +
Sbjct: 57 GHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKV 116
Query: 152 IHADNALDFQEFMIMPV 168
I +D+A+D + MP+
Sbjct: 117 ISSDSAVDVKPGNAMPL 133
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 23.1 bits (48), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 404 RIEESLGKQAKFAGRSILIHQ 424
RI GK K A + +LIHQ
Sbjct: 48 RIRSEAGKHRKNAAKRMLIHQ 68
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 263,539
Number of Sequences: 1233
Number of extensions: 10970
Number of successful extensions: 38
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 11
length of query: 424
length of database: 328,796
effective HSP length: 76
effective length of query: 348
effective length of database: 235,088
effective search space: 81810624
effective search space used: 81810624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)