Query gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 105 No_of_seqs 100 out of 686 Neff 7.1 Searched_HMMs 33803 Date Wed Jun 1 14:46:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780671.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1vlp_A Naprtase, nicotinate p 73.9 3.7 0.00011 21.6 3.5 39 66-104 25-66 (102) 2 >2w6a_A ARF GTPase-activating 69.6 8.8 0.00026 19.3 5.4 42 33-74 7-48 (63) 3 >1m1j_A Fibrinogen alpha subun 62.2 12 0.00036 18.4 5.4 35 40-74 1-35 (373) 4 >1zhc_A Hypothetical protein H 59.9 10 0.0003 18.8 3.5 52 40-91 4-55 (76) 5 >3i1g_A General control protei 59.2 11 0.00034 18.6 3.6 26 49-74 3-28 (33) 6 >1rz2_A Conserved hypothetical 56.6 4.3 0.00013 21.2 1.0 22 11-32 12-33 (254) 7 >1fos_E P55-C-FOS proto-oncoge 52.3 18 0.00053 17.4 4.5 33 42-74 18-50 (62) 8 >1ihq_A Chimeric peptide glytm 46.6 22 0.00066 16.8 3.9 27 48-74 7-33 (38) 9 >1t2k_D Cyclic-AMP-dependent t 46.4 22 0.00066 16.8 4.8 34 41-74 17-50 (61) 10 >1gk7_A Vimentin; intermediate 45.2 23 0.00069 16.7 5.1 34 39-72 6-39 (39) 11 >1a02_F FOS, AP-1 fragment FOS 44.4 24 0.00071 16.6 4.7 34 41-74 18-51 (56) 12 >2yy0_A C-MYC-binding protein; 43.1 25 0.00074 16.5 4.3 29 41-69 21-49 (53) 13 >1a93_B MAX protein, coiled co 42.7 25 0.00075 16.4 4.7 28 45-72 6-33 (34) 14 >1dh3_A Transcription factor C 42.3 26 0.00076 16.4 5.4 35 41-75 17-51 (55) 15 >1ci6_A Transcription factor A 41.3 27 0.00079 16.3 4.5 32 43-74 20-51 (63) 16 >1jnm_A Proto-oncogene C-JUN; 37.1 31 0.00092 15.9 5.1 32 43-74 19-50 (62) 17 >2dgc_A Protein (GCN4); basic 36.7 32 0.00093 15.9 5.3 34 41-74 25-58 (63) 18 >1gu4_A CAAT/enhancer binding 36.1 32 0.00096 15.8 5.4 31 44-74 34-64 (78) 19 >2fgy_A Carboxysome shell poly 35.2 33 0.00099 15.7 7.0 55 42-99 84-141 (175) 20 >1hjb_A Ccaat/enhancer binding 33.7 35 0.001 15.6 5.5 33 42-74 32-64 (87) 21 >3efg_A Protein SLYX homolog; 32.8 37 0.0011 15.5 3.4 35 41-75 30-64 (78) 22 >1t6f_A Geminin; coiled-coil, 31.2 39 0.0011 15.3 4.7 28 39-66 7-34 (37) 23 >1czq_A IQN17, fusion protein 29.0 42 0.0013 15.1 3.9 26 49-74 4-29 (46) 24 >1dip_A Delta-sleep-inducing p 28.8 43 0.0013 15.1 4.1 29 46-74 14-42 (77) 25 >1p9i_A Cortexillin I/GCN4 hyb 27.7 45 0.0013 14.9 3.0 22 51-72 4-25 (31) 26 >2oa5_A Hypothetical protein B 25.9 48 0.0014 14.7 2.5 26 47-72 9-34 (110) 27 >1gd2_E Transcription factor P 25.8 48 0.0014 14.7 5.6 35 41-75 24-58 (70) 28 >2gd7_A Hexim1 protein, HMBA-i 25.7 48 0.0014 14.7 3.6 25 49-73 71-95 (107) 29 >3ibp_A Chromosome partition p 25.5 49 0.0014 14.7 3.7 32 44-75 36-67 (121) 30 >1nlw_A MAD protein, MAX dimer 23.6 53 0.0016 14.5 5.0 32 41-72 49-80 (80) 31 >1ses_A Seryl-tRNA synthetase; 23.6 53 0.0016 14.5 4.3 30 43-72 8-37 (83) 32 >1nkp_A C-MYC, MYC proto-oncog 23.3 54 0.0016 14.4 5.5 34 41-74 54-87 (88) 33 >1fmh_A General control protei 23.2 54 0.0016 14.4 4.7 26 43-68 5-30 (33) 34 >1xtz_A Ribose-5-phosphate iso 22.6 56 0.0016 14.4 2.7 25 79-103 22-46 (176) 35 >3f6n_A Virion-associated prot 21.3 59 0.0017 14.2 6.2 45 41-88 4-48 (129) 36 >3ghg_A Fibrinogen alpha chain 21.2 59 0.0018 14.2 3.6 28 46-73 3-30 (455) 37 >3c3f_A Alpha/beta peptide wit 21.2 60 0.0018 14.2 3.9 27 48-74 3-29 (34) 38 >1u0i_A IAAL-E3; coiled-coil, 21.0 60 0.0018 14.2 2.7 18 56-73 3-20 (26) 39 >2dq0_A Seryl-tRNA synthetase; 20.7 61 0.0018 14.1 7.7 49 38-86 30-78 (113) 40 >1x4t_A Hypothetical protein L 20.5 62 0.0018 14.1 3.3 32 46-81 52-83 (92) No 1 >>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; YOR209C, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} (A:275-376) Probab=73.93 E-value=3.7 Score=21.59 Aligned_cols=39 Identities=15% Similarity=-0.030 Sum_probs=29.9 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH---CCCCCCCEEEEECC Q ss_conf 9999950279989899999999980---98789868767527 Q gi|254780671|r 66 ERKVKLMSDGSLEKDLLDEKARYSL---NLSRSDEIILFYSD 104 (105) Q Consensus 66 ~~~i~~L~~~~~D~d~lEe~aR~~L---g~~kp~E~iii~~d 104 (105) .....-.+-+|=||.++-+.+|+.| |++.|.++.|+++| T Consensus 25 ~~~~~GVRlDSGD~~~~~~~vr~~ld~~G~~d~~~~~Iv~S~ 66 (102) T 1vlp_A 25 SDAYVGVRQDSGDPVEYTKKISHHYHDVLKLPKFSKIICYSD 66 (102) T ss_dssp HHHSCEEEECSSCHHHHHHHHHHHHHTTSCCCTTSSEEEECS T ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 202436644898667799999999998168987763999979 No 2 >>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} (A:) Probab=69.59 E-value=8.8 Score=19.26 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=37.0 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 372039999999999999999999999999999999995027 Q gi|254780671|r 33 VGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 33 ~g~~Gl~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .|+-.+..|.++++-+..-++++..|-+-|..|..++..|++ T Consensus 7 DGpVt~qEylevK~AL~aSEakiQqLmkvN~nls~Elr~lQ~ 48 (63) T 2w6a_A 7 DGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQR 48 (63) T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 996019999999999875299999999997877599999999 No 3 >>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491) Probab=62.15 E-value=12 Score=18.37 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999999995027 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) +...|++.+.+++++++.|+++..+..+++++... T Consensus 1 k~~~lk~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 35 (373) T 1m1j_A 1 RIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEV 35 (373) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999999 No 4 >>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori 26695} (A:) Probab=59.86 E-value=10 Score=18.84 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999999999502799898999999999809 Q gi|254780671|r 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN 91 (105) Q Consensus 40 ~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg 91 (105) .+.+.-.++......-+.|-.+-..|..+|.++.++..|.+.++..=+++|- T Consensus 4 e~~d~I~~Lk~~D~~Fa~l~~~y~~Ld~~I~~lE~~p~~d~~~~~LKk~Rl~ 55 (76) T 1zhc_A 4 EFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLK 55 (76) T ss_dssp HHHHHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 6899999998578999999999999999999987699980999999999998 No 5 >>3i1g_A General control protein GCN4; leucine zipper, peptide, synthetic peptide, helix, double helix, activator, amino-acid biosynthesis, DNA- binding; 1.60A {Synthetic} PDB: 2ahp_A* 2o7h_A (A:) Probab=59.20 E-value=11 Score=18.56 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999995027 Q gi|254780671|r 49 IERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 49 ~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .+++.+.+++-+.|..|++++.+|+. T Consensus 3 ~qlEdkveElL~kn~~lEnEvarlk~ 28 (33) T 3i1g_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 67899999999988768889999999 No 6 >>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} (A:) Probab=56.60 E-value=4.3 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7999999999999999999998 Q gi|254780671|r 11 FFRAIFLVIAFCCVVYFTNHAI 32 (105) Q Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~ 32 (105) +...++++++++++++.++..+ T Consensus 12 ~~~~il~~~~~~~~~~~~~~~~ 33 (254) T 1rz2_A 12 FFQRILTVVFLGTFFYSVYELG 33 (254) T ss_dssp ---------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999 No 7 >>1fos_E P55-C-FOS proto-oncogene protein; coiled-coil, DNA-binding protein, heterodimer, transcription/DNA complex; HET: DNA; 3.05A {Homo sapiens} (E:) Probab=52.32 E-value=18 Score=17.36 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=19.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999999995027 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..+..++.++..|+.+|..|..++..|.. T Consensus 18 ~Rkk~~~~~Le~~v~~l~~~n~~L~~e~~~l~~ 50 (62) T 1fos_E 18 NRRRELTDTLQAETDQLEDEKSALQTEIANLLK 50 (62) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999 No 8 >>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} (A:) Probab=46.57 E-value=22 Score=16.81 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999995027 Q gi|254780671|r 48 LIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 48 ~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ..+.+..++++..+|-.|+++|.+|+. T Consensus 7 mkq~edKieellsknYHlENevARlkk 33 (38) T 1ihq_A 7 LEAVRRKIRSLQEQNYHLENEVARLKK 33 (38) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999899874568989999999 No 9 >>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} (D:) Probab=46.41 E-value=22 Score=16.79 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ....+..+..++.++..|..+|..|..++..|.. T Consensus 17 R~rkk~~~~~Le~~~~~L~~e~~~L~~~~~~l~~ 50 (61) T 1t2k_D 17 RQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999 No 10 >>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} (A:) Probab=45.20 E-value=23 Score=16.68 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999950 Q gi|254780671|r 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) .....++...+..-.....|+++|..|+.+|..| T Consensus 6 ~~mq~LNdRlA~YIekVr~LE~~N~~Le~~i~~l 39 (39) T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 4499988899989999999998537999998519 No 11 >>1a02_F FOS, AP-1 fragment FOS; transcription factor, NFAT, NF-AT, FOS-JUN, quaternary protein-DNA complex, transcription synergy; HET: DNA; 2.70A {Homo sapiens} (F:) Probab=44.40 E-value=24 Score=16.60 Aligned_cols=34 Identities=9% Similarity=0.096 Sum_probs=22.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ....+..+..++.+...|+.++..|..++..|.. T Consensus 18 R~rkk~~~~~Le~~v~~L~~~~~~L~~~~~~l~~ 51 (56) T 1a02_F 18 RNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (56) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999987799999999999999999999999 No 12 >>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} (A:) Probab=43.12 E-value=25 Score=16.48 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKV 69 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i 69 (105) .-.++.++.++++..+.|..+|..|..++ T Consensus 21 vEaLrlEl~eLkqK~e~L~eEN~eLK~kL 49 (53) T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999998 No 13 >>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} (B:) Probab=42.67 E-value=25 Score=16.44 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999950 Q gi|254780671|r 45 EKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 45 ~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) .+....-++.+..|+.+|..|+.+|..| T Consensus 6 RrKn~tHqqDIDDLKRQN~lLe~Qir~L 33 (34) T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 2355304433699999889999999850 No 14 >>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} (A:) Probab=42.35 E-value=26 Score=16.41 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999999999999999950279 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) ....+..+..++.++..|..+|..|..++..|... T Consensus 17 R~Rkk~~~~~Le~~v~~L~~en~~L~~~~~~l~~e 51 (55) T 1dh3_A 17 RRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999998 No 15 >>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} (A:) Probab=41.31 E-value=27 Score=16.31 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999995027 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ..+..+.+++.++..++.++..|..++..|.. T Consensus 20 rkk~~~~eLe~~~~~l~~~~~~L~~e~~~l~~ 51 (63) T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAK 51 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999988999999 No 16 >>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} (A:) Probab=37.09 E-value=31 Score=15.90 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=17.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999999995027 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ..+..+..++.+...|+.+|..|..++..|.. T Consensus 19 rkk~~~~~Le~~v~~L~~e~~~L~~~~~~l~~ 50 (62) T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999 No 17 >>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} (A:) Probab=36.73 E-value=32 Score=15.87 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ....+..+..++.++..|..+|..|..++..|+. T Consensus 25 R~Rkk~~~~~Le~~v~~L~~en~~L~~e~~~l~~ 58 (63) T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999 No 18 >>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} (A:) Probab=36.11 E-value=32 Score=15.81 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999995027 Q gi|254780671|r 44 LEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .+..+..++.++..|+.++..|..++..|.. T Consensus 34 kk~~~~~Le~~~~~L~~e~~~L~~~~~~l~~ 64 (78) T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8875068888899987325899999999999 No 19 >>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus} (A:1-175) Probab=35.19 E-value=33 Score=15.72 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=42.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHCCCCCCCEE Q ss_conf 999999999999999999999999999995027998989999---9999980987898687 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLD---EKARYSLNLSRSDEII 99 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lE---e~aR~~Lg~~kp~E~i 99 (105) ...++.+...+.+++.-=..+.-.-++|..|+. |+|++| ++||++||+--|.+++ T Consensus 84 ~~~N~~L~~YE~~VKgrFdrIVPvLK~IsalQh---e~DF~erAQ~laraeLGf~LP~~iL 141 (175) T 2fgy_A 84 LEANEQLGRCEDSVKNRFDRVIPFLQVVAGIPL---GLDHVTRVQELAQSSLGHTLPEELL 141 (175) T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSCS---SSCCHHHHHHHHHHHHSSCCCGGGS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCCHHHH T ss_conf 889999999999999887778999999875426---7459999999999975898838898 No 20 >>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} (A:) Probab=33.65 E-value=35 Score=15.56 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=18.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999999999995027 Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..+..++.++..|+.+|..|..++..|+. T Consensus 32 ~Rkk~~~~~Le~~~~~L~~e~~~L~~~~~~l~~ 64 (87) T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (87) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 088875068887899987325899999999999 No 21 >>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structural genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} (A:) Probab=32.79 E-value=37 Score=15.48 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999999999999999950279 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) .-+++..+...+.++..|..+...|..++..+.+. T Consensus 30 ie~Ln~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 64 (78) T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC------ T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999999999999999999974345 No 22 >>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} (A:) Probab=31.23 E-value=39 Score=15.32 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999 Q gi|254780671|r 39 KANKSLEKSLIERERFLSELKENRSRLE 66 (105) Q Consensus 39 ~~~~~l~~~~~~~~~~l~~l~~~~~~L~ 66 (105) ..--.+.++++....+++.|+++|..|. T Consensus 7 qENEKLHkeie~kd~eIa~Lk~EN~eL~ 34 (37) T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8869999999861389999998229888 No 23 >>1czq_A IQN17, fusion protein between the hydrophobic pocket of HIV GP41 and GCN4-PIQI; envelope glycoprotein, coiled coil, viral protein/viral protein inhibitor complex; HET: DAR DHI DTR; 1.50A {Saccharomyces cerevisiae} (A:) Probab=29.03 E-value=42 Score=15.09 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999995027 Q gi|254780671|r 49 IERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 49 ~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .+.+.+++++..++-.++++|.+++. T Consensus 4 KQiEDkiEEilSK~yhiENEiARiKK 29 (46) T 1czq_A 4 KQIEDKIEEIESKQKKIENEIARIKK 29 (46) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 68889999999988888889999999 No 24 >>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} (A:) Probab=28.79 E-value=43 Score=15.06 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999999999999995027 Q gi|254780671|r 46 KSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) .+.+.++..+.+|..+|..|+.+-..|++ T Consensus 14 EEVevLke~I~eL~~~~~~Le~EN~~Lk~ 42 (77) T 1dip_A 14 EEVEILKEQIRELVEKNSQLERENTLLKT 42 (77) T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999995 No 25 >>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} (A:) Probab=27.72 E-value=45 Score=14.95 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999950 Q gi|254780671|r 51 RERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 51 ~~~~l~~l~~~~~~L~~~i~~L 72 (105) +.+-+..++.+|.+|..++..| T Consensus 4 lnallasleaenkqlkakveel 25 (31) T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999998898878999999999 No 26 >>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} (A:) Probab=25.88 E-value=48 Score=14.74 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999950 Q gi|254780671|r 47 SLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 47 ~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) ..+++.+++..|+-||..|..++.+= T Consensus 9 tvEeLaaeL~kL~mENk~LKkkl~~~ 34 (110) T 2oa5_A 9 TYEEXVKEVERLKLENKTLKQKVKSS 34 (110) T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--- T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999998789999998558 No 27 >>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} (E:) Probab=25.80 E-value=48 Score=14.73 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999999999999999950279 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) .......+..++.++..|+.++..|..++..|... T Consensus 24 R~rkk~~~~~Le~~v~~L~~~~~~L~~~~~~l~~e 58 (70) T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 98778899999988735998644431031989999 No 28 >>2gd7_A Hexim1 protein, HMBA-inducible; transcription regulation, transcription elongation, positive transcription elongation factor-B; NMR {Homo sapiens} (A:) Probab=25.75 E-value=48 Score=14.73 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999502 Q gi|254780671|r 49 IERERFLSELKENRSRLERKVKLMS 73 (105) Q Consensus 49 ~~~~~~l~~l~~~~~~L~~~i~~L~ 73 (105) ..+..++..|+.+|..|..+-..|+ T Consensus 71 ~~l~~ei~~Lr~EN~~Lr~ENe~lr 95 (107) T 2gd7_A 71 RELELELDRLRAENLQLLTENELHR 95 (107) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999899998 No 29 >>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, cohesin, chromosome segregation, hinge; 3.10A {Escherichia coli k-12} (A:39-106,A:216-268) Probab=25.52 E-value=49 Score=14.70 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999999999999950279 Q gi|254780671|r 44 LEKSLIERERFLSELKENRSRLERKVKLMSDG 75 (105) Q Consensus 44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~ 75 (105) +-.+..+...+-..+...+..|+.+|.+|.+. T Consensus 36 ~Le~ERe~t~erD~la~rk~~ld~qIerLsqP 67 (121) T 3ibp_A 36 LLEREREAIVERDEVGARKNAVDEEIERLSQP 67 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99889878888889999887545589999999 No 30 >>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} (A:) Probab=23.63 E-value=53 Score=14.48 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999950 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) ...+..++..+..+...+..++..+..+++.| T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~l~~~~~~L 80 (80) T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999999999999998629 No 31 >>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107) Probab=23.61 E-value=53 Score=14.48 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999950 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERKVKLM 72 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L 72 (105) ++..+...+..++..++++.+.+..+|..+ T Consensus 8 ~ld~~~r~l~~~~~~l~~~rn~~sk~I~~~ 37 (83) T 1ses_A 8 ALDREVQELKKRLQEVQTERNQVAKRVPKA 37 (83) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999997532 No 32 >>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} (A:) Probab=23.34 E-value=54 Score=14.45 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999999999999995027 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ...+..++..+..+...+..++..+..+++.|++ T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 87 (88) T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999999999999997548 No 33 >>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} (A:) Probab=23.21 E-value=54 Score=14.43 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999 Q gi|254780671|r 43 SLEKSLIERERFLSELKENRSRLERK 68 (105) Q Consensus 43 ~l~~~~~~~~~~l~~l~~~~~~L~~~ 68 (105) ++.++.++.+++.-.|+++..+|+++ T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33) T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999886899999999876 No 34 >>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} (A:1-152,A:241-264) Probab=22.60 E-value=56 Score=14.36 Aligned_cols=25 Identities=20% Similarity=-0.108 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 8999999999809878986876752 Q gi|254780671|r 79 KDLLDEKARYSLNLSRSDEIILFYS 103 (105) Q Consensus 79 ~d~lEe~aR~~Lg~~kp~E~iii~~ 103 (105) ...+.+.|.+..+|++||+.|++-. T Consensus 22 K~~IA~~Aae~~slI~~g~tIfld~ 46 (176) T 1xtz_A 22 KRAAAYRAVDENLKFDDHKIIGIGS 46 (176) T ss_dssp HHHHHHHHHHHHCCTTTCCEEEECC T ss_pred HHHHHHHHHHHCCCCCCCCEEEECH T ss_conf 9999999998447689998999602 No 35 >>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, DNA-binding protein; 3.10A {Cauliflower mosaic virus} (A:) Probab=21.34 E-value=59 Score=14.20 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH Q ss_conf 999999999999999999999999999999502799898999999999 Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY 88 (105) Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~ 88 (105) +.+++.++.++...+.+|.++..++-.++..... +.+.+|.+|-+ T Consensus 4 L~~I~~eI~el~~~ik~l~~~i~~Il~Kl~s~~~---t~~~lEsiAAK 48 (129) T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGSQNP---IKESLETVAAK 48 (129) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHH T ss_conf 8999999999999999999999999974279972---03468999999 No 36 >>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* (A:108-562) Probab=21.25 E-value=59 Score=14.19 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999999999999502 Q gi|254780671|r 46 KSLIERERFLSELKENRSRLERKVKLMS 73 (105) Q Consensus 46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~ 73 (105) +++++++.|+++++.+..+..+++..++ T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~q~~~~~ 30 (455) T 3ghg_A 3 RVSEDLRSRIEVLKRKVIEKVQHIQLLQ 30 (455) T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999 No 37 >>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain sequence on AN (alpha-alpha-alpha-beta)...; helix bundle, foldamer, coiled coil, unknown function; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} (A:) Probab=21.20 E-value=60 Score=14.18 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999999995027 Q gi|254780671|r 48 LIERERFLSELKENRSRLERKVKLMSD 74 (105) Q Consensus 48 ~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105) ..+++..++++-.++-.++++|.+++. T Consensus 3 mkq~edkiee~lsk~yhleneiar~kk 29 (34) T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 879999999999999870008999999 No 38 >>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:) Probab=20.96 E-value=60 Score=14.15 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999502 Q gi|254780671|r 56 SELKENRSRLERKVKLMS 73 (105) Q Consensus 56 ~~l~~~~~~L~~~i~~L~ 73 (105) ..|+++...|+.+|..|. T Consensus 3 aalekeiaalekeiaale 20 (26) T 1u0i_A 3 AALEKEIAALEKEIAALE 20 (26) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 789999999999999998 No 39 >>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113) Probab=20.68 E-value=61 Score=14.11 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 9999999999999999999999999999999995027998989999999 Q gi|254780671|r 38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKA 86 (105) Q Consensus 38 l~~~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe~a 86 (105) +-....+..+...+..++..++++.+.+..+|..++.+..|.+-+-+.+ T Consensus 30 id~i~~l~~~~r~~~~~~~~l~~~rn~lsk~i~~~~~~~~e~~~l~~e~ 78 (113) T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKS 78 (113) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 9999999999999999999999999999999999986799789999999 No 40 >>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=20.51 E-value=62 Score=14.09 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 999999999999999999999999950279989899 Q gi|254780671|r 46 KSLIERERFLSELKENRSRLERKVKLMSDGSLEKDL 81 (105) Q Consensus 46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~ 81 (105) .++..+..++..|-.+....|.+|..|-- ||| T Consensus 52 ~~iRdLNdeINkL~~eK~~WE~rI~~LGG----pdy 83 (92) T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKELGG----PDY 83 (92) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCH T ss_conf 99999999999999999999999999389----714 Done!