Query gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 105
No_of_seqs 100 out of 686
Neff 7.1
Searched_HMMs 13730
Date Wed Jun 1 08:13:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780671.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 35.3 14 0.00098 15.7 5.5 34 41-74 54-87 (88)
2 d1nkpb_ a.38.1.1 (B:) Max prot 28.7 17 0.0013 15.1 5.2 32 42-73 50-81 (83)
3 d1ybea1 c.1.17.2 (A:168-433) N 27.5 13 0.00096 15.8 1.7 34 71-104 143-178 (266)
4 d2oa5a1 d.362.1.1 (A:7-102) Un 27.4 17 0.0013 15.1 2.3 24 48-71 4-27 (96)
5 d1x4ta1 a.2.15.1 (A:7-86) Pre- 22.4 23 0.0017 14.3 3.3 29 46-74 46-74 (80)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 17.0 30 0.0022 13.6 2.3 34 44-84 2-35 (66)
7 d1jjcb2 a.6.1.1 (B:400-474) Do 15.7 32 0.0023 13.5 1.6 13 79-92 58-70 (75)
8 d2vgba3 c.49.1.1 (A:440-573) P 14.1 36 0.0026 13.1 3.7 15 89-103 103-117 (134)
9 d1l7va_ f.22.1.1 (A:) ABC tran 14.0 36 0.0026 13.1 4.3 37 1-37 1-37 (324)
10 d2gtvx1 a.130.1.3 (X:1-93) Cho 13.2 38 0.0028 13.0 3.5 52 40-91 33-88 (93)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.32 E-value=14 Score=15.73 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999995027
Q gi|254780671|r 41 NKSLEKSLIERERFLSELKENRSRLERKVKLMSD 74 (105)
Q Consensus 41 ~~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105)
...+..+...+..+...+..++..|..++..|+.
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999997569
No 2
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.75 E-value=17 Score=15.06 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999502
Q gi|254780671|r 42 KSLEKSLIERERFLSELKENRSRLERKVKLMS 73 (105)
Q Consensus 42 ~~l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~ 73 (105)
..+..+...+..++..+..++..|..++..|+
T Consensus 50 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 81 (83)
T d1nkpb_ 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999998727
No 3
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=27.49 E-value=13 Score=15.79 Aligned_cols=34 Identities=18% Similarity=-0.041 Sum_probs=23.6
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCC--CCCEEEEECC
Q ss_conf 502799898999999999809878--9868767527
Q gi|254780671|r 71 LMSDGSLEKDLLDEKARYSLNLSR--SDEIILFYSD 104 (105)
Q Consensus 71 ~L~~~~~D~d~lEe~aR~~Lg~~k--p~E~iii~~d 104 (105)
-.+-+|=||.++-+.+|..|.-.. |..+.|+++|
T Consensus 143 GVRlDSGDl~~ls~~~r~~ld~~G~~p~~~~Iv~S~ 178 (266)
T d1ybea1 143 GFRPDSAPPIEGGEKIIEWWRKMGRDPRTKMLIFSD 178 (266)
T ss_dssp EECCCSSCHHHHHHHHHHHHHHTTCCGGGSEEEECT
T ss_pred CEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 455089982889999999999829997884799979
No 4
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=27.39 E-value=17 Score=15.06 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999995
Q gi|254780671|r 48 LIERERFLSELKENRSRLERKVKL 71 (105)
Q Consensus 48 ~~~~~~~l~~l~~~~~~L~~~i~~ 71 (105)
.+++.+++..|+-||..|..++.+
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999878999999853
No 5
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.36 E-value=23 Score=14.33 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999995027
Q gi|254780671|r 46 KSLIERERFLSELKENRSRLERKVKLMSD 74 (105)
Q Consensus 46 ~~~~~~~~~l~~l~~~~~~L~~~i~~L~~ 74 (105)
.++..+..++..|-.+...++.+|.-|--
T Consensus 46 ~~IRdLNDeINkL~reK~~WE~rI~eLGG 74 (80)
T d1x4ta1 46 FRIRDLNDEINKLLREKGHWEVRIKELGG 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999899999999999999999998279
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=16.97 E-value=30 Score=13.60 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999999999999999999999950279989899999
Q gi|254780671|r 44 LEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDE 84 (105)
Q Consensus 44 l~~~~~~~~~~l~~l~~~~~~L~~~i~~L~~~~~D~d~lEe 84 (105)
+..++..++.++..++.+...++.+ |++ |.|++.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~k---L~N----~~F~~k 35 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRK---LAS----PGFREK 35 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HTS----TTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HCC----HHHHHH
T ss_conf 8879998998999999999999988---878----078776
No 7
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=15.68 E-value=32 Score=13.47 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 89999999998098
Q gi|254780671|r 79 KDLLDEKARYSLNL 92 (105)
Q Consensus 79 ~d~lEe~aR~~Lg~ 92 (105)
.|.+||+|| -+||
T Consensus 58 ~DliEEi~R-~~Gy 70 (75)
T d1jjcb2 58 EDLVEEVAR-IQGY 70 (75)
T ss_dssp HHHHHHHHH-HHCG
T ss_pred CHHHHHHHH-HHCC
T ss_conf 658999999-8486
No 8
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.08 E-value=36 Score=13.14 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=13.2
Q ss_pred HHCCCCCCCEEEEEC
Q ss_conf 809878986876752
Q gi|254780671|r 89 SLNLSRSDEIILFYS 103 (105)
Q Consensus 89 ~Lg~~kp~E~iii~~ 103 (105)
+.|+++|||.+++..
T Consensus 103 ~~~~~~~GD~VVvv~ 117 (134)
T d2vgba3 103 LRGFLRVGDLVIVVT 117 (134)
T ss_dssp HTTSCCTTCEEEEEE
T ss_pred HCCCCCCCCEEEEEE
T ss_conf 839989989999961
No 9
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=13.97 E-value=36 Score=13.12 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 9624989867799999999999999999999837203
Q gi|254780671|r 1 MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYG 37 (105)
Q Consensus 1 m~tk~~r~~~~~~~~~~~~~~~~~~~f~~~~~~g~~G 37 (105)
|.|-.+++++.....+..+.+++++.+..+...|+..
T Consensus 1 m~~~~~~~~r~~~~~l~~l~~ll~~~~~~sl~~G~~~ 37 (324)
T d1l7va_ 1 MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQW 37 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBSSSB
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9544677877789999999999999999999947876
No 10
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}
Probab=13.21 E-value=38 Score=12.99 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 999999999999999999----9999999999999502799898999999999809
Q gi|254780671|r 40 ANKSLEKSLIERERFLSE----LKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN 91 (105)
Q Consensus 40 ~~~~l~~~~~~~~~~l~~----l~~~~~~L~~~i~~L~~~~~D~d~lEe~aR~~Lg 91 (105)
.+..+-.++...+..... -..+.+-++.-...-....+||++++.+-+.-..
T Consensus 33 ~R~~l~~~I~~~K~~~~~pi~d~~RE~~vl~~~~~~a~~~~l~~~~i~~if~~ii~ 88 (93)
T d2gtvx1 33 ERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIFQRLIE 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999999999998839999987999999999999866479699999999999999
Done!