RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780671|ref|YP_003065084.1| putative cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (105 letters)



>gnl|CDD|32743 COG2919, COG2919, Septum formation initiator [Cell division and
           chromosome partitioning].
          Length = 117

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 1   MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKE 60
             T+  ++    R I  ++    +  F   A  G  G      L++ +  ++  L +L  
Sbjct: 12  KATRQGERRVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSA 71

Query: 61  NRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFYSD 104
             + LE ++K + DG   +D ++E+AR  L +S+  EI      
Sbjct: 72  RNTALEAEIKDLKDG---RDYIEERARSELGMSKPGEIFFRLVK 112


>gnl|CDD|147248 pfam04977, DivIC, Septum formation initiator.  DivIC from B.
          subtilis is necessary for both vegetative and
          sporulation septum formation. These proteins are mainly
          composed of an amino terminal coiled-coil.
          Length = 80

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 24 VVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLD 83
          ++ F    I G  GL A   L + +   +  L++LK     LE +VK +       D ++
Sbjct: 2  LLLFQYLLIFGVGGLSAYYQLNQEIAALQAELAKLKAENEELEAEVKDLKSD---PDYIE 58

Query: 84 EKARYSLNLSRSDEII 99
          E+AR  L L +  E I
Sbjct: 59 ERARSELGLVKPGETI 74


>gnl|CDD|38015 KOG2804, KOG2804, KOG2804, Phosphorylcholine
           transferase/cholinephosphate cytidylyltransferase [Lipid
           transport and metabolism].
          Length = 348

 Score = 28.1 bits (62), Expect = 0.47
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 32  IVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKV-KLMSDGSLEKDLLDEKARYSL 90
           IV DY +   ++L +    +E  +S LKE + RL+ KV +L      +++ + E +R  +
Sbjct: 196 IVRDYDVYVRRNLARGYSAKELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEFSRDLI 255

Query: 91  N--LSRSDEII 99
                +S E I
Sbjct: 256 QKWEEKSREFI 266


>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic
           domain. Archaeal proteins that are involved in DNA
           replication are similar to those from eukaryotes. Some
           members of the archaea also possess multiple family B
           DNA polymerases (B1, B2 and B3). So far there is no
           specific function(s) has been assigned for different
           members of the archaea type B DNA polymerases.
           Phylogenetic analyses of eubacterial, archaeal, and
           eukaryotic family B DNA polymerases are support
           independent gene duplications during the evolution of
           archaeal and eukaryotic family B DNA polymerases.
           Structural comparison of the thermostable DNA polymerase
           type B to its mesostable homolog suggests several
           adaptations to high temperature such as shorter loops,
           disulfide bridges, and increasing electrostatic
           interaction at subdomain interfaces..
          Length = 371

 Score = 28.1 bits (63), Expect = 0.58
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 53  RFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR 87
             L +L E R R++ K+K +   S E  LLDE+ R
Sbjct: 71  SVLEDLLEERRRIKEKMKKLDPESEEYKLLDERQR 105


>gnl|CDD|34550 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
           and chromosome partitioning].
          Length = 420

 Score = 27.6 bits (61), Expect = 0.74
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 39  KANKSLEKSLIERERFLSELKENRSRLERKV 69
           K    L   L   ++ L EL+ N SRL+ ++
Sbjct: 210 KTLAQLNSELSADQKKLEELRANESRLKNEI 240


>gnl|CDD|32910 COG3096, MukB, Uncharacterized protein involved in chromosome
           partitioning [Cell division and chromosome
           partitioning].
          Length = 1480

 Score = 26.9 bits (59), Expect = 1.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 35  DYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARY 88
           DY L  N  + K+  + E   + L+ENR  LE      SD  L K L+ E   Y
Sbjct: 219 DYLLPENSGVRKAFQDME---AALRENRMTLEAIRVTQSDRDLFKHLISEATNY 269


>gnl|CDD|35737 KOG0517, KOG0517, KOG0517, Beta-spectrin [Cytoskeleton].
          Length = 2473

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 31   AIVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVK----LMSDGSLEKDLLDEKA 86
             +  D   +  ++L    ++ + F +EL  N+  LE+  K    L+S+    K L+++K 
Sbjct: 1291 LMAQDESYRDARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELVSEKPELKALVEKKL 1350

Query: 87   R 87
            R
Sbjct: 1351 R 1351


>gnl|CDD|144619 pfam01093, Clusterin, Clusterin. 
          Length = 460

 Score = 26.6 bits (59), Expect = 1.5
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 36 YGLKANKSL-EKSLIERERFLSELKENRSRLERKVKLMSD 74
           G+K  K+L E++  E +  +S L++ +   E  +KL ++
Sbjct: 49 IGVKQMKTLMERTEEEHKNLMSTLEKTKKEKEEALKLANE 88


>gnl|CDD|39823 KOG4623, KOG4623, KOG4623, Uncharacterized conserved protein
           [Function unknown].
          Length = 611

 Score = 26.2 bits (57), Expect = 1.8
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 38  LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLE-KDLLDEKARYSLN 91
           +K  K  +    + +R+  EL+  R  LE    L S+     +D LDE    + N
Sbjct: 113 IKNRKLADFEPPDEQRYDEELEVYRKSLEEMFPLCSECYDSVQDQLDENKYEAKN 167


>gnl|CDD|177097 CHL00206, ycf2, Ycf2; Provisional.
          Length = 2281

 Score = 25.6 bits (56), Expect = 3.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 57   ELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIIL 100
            EL  +R R  R    +S+G    + L E  +Y  NL  S+  +L
Sbjct: 2215 ELLIHRQRWLRTNSSLSNGFFRSNTLSESYQYLSNLFLSNGTLL 2258


>gnl|CDD|146312 pfam03609, EII-Sor, PTS system sorbose-specific iic component. 
          Length = 237

 Score = 25.5 bits (57), Expect = 3.4
 Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 7/27 (25%)

Query: 1   MWTKYYKKNHFFRAIFLVIAFCCVVYF 27
           M  K Y         F ++ F    Y 
Sbjct: 200 MPKKEY-------IPFFLLGFVLAAYL 219


>gnl|CDD|35694 KOG0473, KOG0473, KOG0473, Leucine-rich repeat protein [Function
           unknown].
          Length = 326

 Score = 24.4 bits (52), Expect = 6.8
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 7   KKNHFFRAIFLVIAFCCVVYFT-NHAIVGDYGLKANKSLEKSLIERERFL 55
           KK  FFR +F  + + CV Y T   A      + A+     S  ER   L
Sbjct: 119 KKTEFFRKLFGFV-WSCVFYLTIVVATSSTVAIAADCKGLGSPRERTAPL 167


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,263,422
Number of extensions: 57286
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 36
Length of query: 105
Length of database: 6,263,737
Length adjustment: 72
Effective length of query: 33
Effective length of database: 4,707,889
Effective search space: 155360337
Effective search space used: 155360337
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)