RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780671|ref|YP_003065084.1| putative cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(105 letters)
>gnl|CDD|183249 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 29.7 bits (67), Expect = 0.18
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 43 SLEKSLIERERFLSELKENRSRLERKV 69
LE SL + ++ LSEL+ N SRL +
Sbjct: 223 GLESSLQKDQQQLSELRANESRLRDSI 249
>gnl|CDD|150799 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 27.7 bits (61), Expect = 0.65
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 40 ANKSLEKSLIERERFLSELKENRSRLER 67
A + LEK+L E+ER + LKE R R ER
Sbjct: 434 ALEKLEKALAEKERIIERLKEQRDRDER 461
>gnl|CDD|163395 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 26.1 bits (58), Expect = 2.3
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 52 ERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKAR 87
+RF E KE R +ER L+K L + K
Sbjct: 768 KRFFEEWKEQRKEIER---------LKKKLAELKIY 794
>gnl|CDD|162092 TIGR00891, 2A0112, putative sialic acid transporter.
Length = 405
Score = 26.0 bits (57), Expect = 2.4
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 11/55 (20%)
Query: 15 IFLVIAFCC-----------VVYFTNHAIVGDYGLKANKSLEKSLIERERFLSEL 58
+F C + G+YG A +E S L
Sbjct: 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL 140
>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. There are two conserved sequence
motifs: GKT and YLP.
Length = 1192
Score = 25.8 bits (57), Expect = 2.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 43 SLEKSLIERERFLSELKENRSRLERKVK 70
E S+ ER L E R RL +K
Sbjct: 884 QAEGSISERLSQLEEFLRKRERLSGDLK 911
>gnl|CDD|184120 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 487
Score = 24.8 bits (55), Expect = 5.5
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 10/47 (21%)
Query: 51 RERFLSELKENRSRLERKVKLMSD----------GSLEKDLLDEKAR 87
E EL+E RLE +L+ D G DL +E AR
Sbjct: 132 YEEAEEELEETLERLEEAAELIQDGDMLWVAPVQGGTYPDLREESAR 178
>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria.
Length = 650
Score = 24.6 bits (54), Expect = 6.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMS 73
+A +SLE + +L E R +LER++K +
Sbjct: 241 EAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIE 275
>gnl|CDD|173093 PRK14630, PRK14630, hypothetical protein; Provisional.
Length = 143
Score = 24.4 bits (53), Expect = 6.3
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDL-LDEKARYSLNLSRSD 96
LK N SLE S R + +E + +K+KLM D E+ L+ KA + + S
Sbjct: 69 LKYNFSLEISTPGINRKIKSDREFKIFEGKKIKLMLDNDFEEGFILEAKADSFIFKTDSK 128
Query: 97 EIILFYSD 104
E+ + YSD
Sbjct: 129 EVNVLYSD 136
>gnl|CDD|162629 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing.
Length = 1283
Score = 24.3 bits (53), Expect = 6.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 53 RFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIIL 100
RF ++ N VKLM+DG L + ++ R+ LSR D II+
Sbjct: 148 RFHDQVSSNTL-----VKLMTDGILLAET--QQDRF---LSRYDTIII 185
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 24.2 bits (52), Expect = 7.2
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 32 IVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYS 89
+V + G+ L K +IE + + E + +R ++ERK++ + K+LL +K+
Sbjct: 33 VVTEGGVMGTGLLAKKMIEIQIGIPEKQASREKIERKLQDL------KELLKQKSYTE 84
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 24.3 bits (53), Expect = 7.3
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKD 80
L+ + L+K L E E+ L EL+E + L ++++ + S+E+
Sbjct: 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEL 590
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 24.1 bits (52), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 9 NHFFRAIFLVIAFCCVVYF 27
N+ FRA+FLV A VV F
Sbjct: 373 NYGFRAVFLVTA--GVVLF 389
>gnl|CDD|185395 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 24.0 bits (52), Expect = 9.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 32 IVGDYGLKANKSLEKSLIERERFLSELKENRSRLERKVKL 71
I D G + +++ + E E++ +E + NR R+E K L
Sbjct: 505 ITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGL 544
>gnl|CDD|184382 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 24.0 bits (53), Expect = 9.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 52 ERFLSELKENRSRLERKVKLMSDGSLEKDLLDE 84
ERF E KE + +E+ K +++ + L
Sbjct: 764 ERFFEEWKEQKKEIEKLRKELAELLASELLSKA 796
>gnl|CDD|151413 pfam10966, DUF2768, Protein of unknown function (DUF2768). This
family of proteins with unknown function appear to be
restricted to Bacillus spp.
Length = 58
Score = 23.8 bits (52), Expect = 9.7
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 3 TKYYKKNHFFRAIFLVIAFCCVV 25
++Y KN F + I ++A+ ++
Sbjct: 22 SRYKLKNKFLKFIVALVAYILML 44
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.139 0.401
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,689,913
Number of extensions: 94221
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 62
Length of query: 105
Length of database: 5,994,473
Length adjustment: 72
Effective length of query: 33
Effective length of database: 4,438,697
Effective search space: 146477001
Effective search space used: 146477001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.0 bits)