RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780671|ref|YP_003065084.1| putative cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (105 letters)



>6ldh_A M4 APO-lactate dehydrogenase;
           oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:)
          Length = 330

 Score = 26.9 bits (58), Expect = 1.1
 Identities = 6/69 (8%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 1   MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERF---LSE 57
           +     + +     +         V+ +   ++ D+G+     ++    E ++     + 
Sbjct: 261 IMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATT 320

Query: 58  LKENRSRLE 66
           L + +  L+
Sbjct: 321 LWDIQKDLK 329


>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical
          bundle, spectrin repeat, cell adhesion; 3.00A {Mus
          musculus} (A:)
          Length = 224

 Score = 25.3 bits (54), Expect = 2.8
 Identities = 7/49 (14%), Positives = 21/49 (42%)

Query: 38 LKANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKA 86
          L  +  L+++L E E  +  +++  + ++     +       DL   ++
Sbjct: 9  LLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVES 57


>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle,
           oxidoreductase; 2.87A {Aeropyrum pernix} (B:)
          Length = 308

 Score = 23.9 bits (50), Expect = 7.5
 Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 25  VYFTNHAIVGDYGLKANKSLEKSLIERERFLS---ELKENRSRLERKVK 70
           +     A++G  G++    L  +  E+ +F      +K+    L  +++
Sbjct: 259 IVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVKKLVETLPPQLR 307


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.324    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 782,647
Number of extensions: 30339
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 18
Length of query: 105
Length of database: 4,956,049
Length adjustment: 62
Effective length of query: 43
Effective length of database: 2,860,139
Effective search space: 122985977
Effective search space used: 122985977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.8 bits)