RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780671|ref|YP_003065084.1| putative cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
         (105 letters)



>d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus
           thermophilus [TaxId: 274]}
          Length = 138

 Score = 24.1 bits (52), Expect = 3.4
 Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 18  VIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKENRSRLE 66
            +      Y     ++G          E+ ++ + +  +  +  + R E
Sbjct: 93  RVYARVEAYNELGDLIGV------GRTEQVILPKAKVEALFRRLKERWE 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.401 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 392,464
Number of extensions: 15541
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 13
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)