BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780671|ref|YP_003065084.1| putative cell division protein
[Candidatus Liberibacter asiaticus str. psy62]
(105 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 105
Score = 211 bits (538), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKE 60
MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKE
Sbjct: 1 MWTKYYKKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLEKSLIERERFLSELKE 60
Query: 61 NRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFYSDF 105
NRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFYSDF
Sbjct: 61 NRSRLERKVKLMSDGSLEKDLLDEKARYSLNLSRSDEIILFYSDF 105
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 25.8 bits (55), Expect = 0.18, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN 91
K KSLE SL+ R + E E RL ++L S+GS E L+ YS N
Sbjct: 66 KRTKSLE-SLLSRNQ---EASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQN 114
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 22.7 bits (47), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDG 75
KAN SL + + R +SE EN K+K M+ G
Sbjct: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
psy62]
Length = 781
Score = 21.9 bits (45), Expect = 2.7, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 10 HFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSLE---KSLIERERFLSELKENRSRLE 66
H + + I + V+ H + L +E K+ I RF+ + +RLE
Sbjct: 154 HNIKQAYASIGYLNVMVKVQHHSISPTTLNITYVIEEGVKAKINSIRFVGNKNYSHARLE 213
Query: 67 RKVKLMSDG--SLEKDLLDEKARYSLNLSRSDEIILFYSD 104
R + + + G S K + K R S + + I FY D
Sbjct: 214 RVISIRTSGYFSFGKTDVYSKERMSFD---EEAIRAFYHD 250
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 20.8 bits (42), Expect = 6.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 40 ANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEK 85
A+K +E + RFLSEL ++ K D D LD++
Sbjct: 152 ADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDA---HDFLDQR 194
>gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 289
Score = 20.4 bits (41), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 7 KKNHFFRAIFLVIAFCCVVYFTNHAIVGDYGL 38
KKN F I + CV++ H + G + L
Sbjct: 179 KKNQVFNRIRVEDVARCVIFLMTHHLGGIFNL 210
>gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 692
Score = 20.0 bits (40), Expect = 9.9, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 10 HFFRAIFLVIAFCCVVYFTNHAIVGDYGLKANKSL 44
H F F ++ C+++ ++ D GL ++ +L
Sbjct: 18 HDFAFSFCIVLIICILFLPIPTVLLDVGLASSIAL 52
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,803
Number of Sequences: 1233
Number of extensions: 2525
Number of successful extensions: 12
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 10
length of query: 105
length of database: 328,796
effective HSP length: 62
effective length of query: 43
effective length of database: 252,350
effective search space: 10851050
effective search space used: 10851050
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 32 (16.9 bits)