HHsearch alignment for GI: 254780673 and conserved domain: COG1154
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism].
Probab=100.00 E-value=0 Score=387.47 Aligned_cols=300 Identities=22% Similarity=0.358 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH-HH
Q ss_conf 00000122355443113650699932434458866532364754081110116666278998999988718864456-66
Q gi|254780673|r 140 ITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE-FM 218 (467)
Q Consensus 140 ~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~-~~ 218 (467)
T Consensus 316 ~sys~vf~~~L~~~a~~d~~ivaITaAM~--~g-tGL-~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaIYS 390 (627)
T COG1154 316 PSYTKVFGDTLCELAAKDEKIVAITAAMP--EG-TGL-VKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAIYS 390 (627)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCC--CC-CCH-HHHHHHC-CHHHEEHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 88789999999999841897599835777--88-776-9998858-4533302356888999999998579998899923
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE---EEECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH
Q ss_conf 667899999999987886742117767888799---830244576444433216-8876322031386652210001055
Q gi|254780673|r 219 TFNFAMQAIDQIINSAAKTRYMSGGQITTSIVF---RGPNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL 294 (467)
Q Consensus 219 ~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~---r~p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll 294 (467)
T Consensus 391 T--FLQRAYDQliHDvai--------qnLPV~faIDRA--GivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627)
T COG1154 391 T--FLQRAYDQLIHDVAI--------QNLPVTFAIDRA--GIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627)
T ss_pred H--HHHHHHHHHHHHHHH--------CCCCEEEEEECC--CCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHH
T ss_conf 7--787778889999886--------069859998467--6458999865518889987348985786679999999999
Q ss_pred HHHHHCC-CCEEEECCCCCCCCC--CCCCCCC-CEECCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5654137-834764021233333--4533466-31214431144431687458602578888888875310046752797
Q gi|254780673|r 295 KAAIRDP-NPVIFLENEILYGSS--FEVPMVD-DLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELI 370 (467)
Q Consensus 295 ~~ai~~~-~Pvi~le~~~ly~~~--~~~p~~~-~~~~p~Gk~~i~~~G~ditii~~G~~~~~a~~aa~~L~~~gi~~~vi 370 (467)
T Consensus 459 ~ta~~~~~gP~A-----iRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVv 533 (627)
T COG1154 459 YTALAQDDGPVA-----IRYPRGNGVGVILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVV 533 (627)
T ss_pred HHHHHCCCCCEE-----EEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999864788748-----994688888877665555134653688725880899944222689999999998639873788
Q ss_pred ECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCH--HHHHHCCCC
Q ss_conf 330068579999999998719899995788767678999999999677642898299717778888896--676560899
Q gi|254780673|r 371 DLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYAA--NLEKLALPN 448 (467)
Q Consensus 371 d~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~~--~le~~~~p~ 448 (467)
T Consensus 534 d~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gLd 610 (627)
T COG1154 534 DPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGLD 610 (627)
T ss_pred CCEECCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHCCC---CCCEEEECCCHHHHCCCCHHHHHHHCCCC
T ss_conf 671267779999999986568699996373146378999999996499---87337713876764369999999883999
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 8999999999850200
Q gi|254780673|r 449 VDEIIESVESICYKRK 464 (467)
Q Consensus 449 ~~~I~~av~~v~~~~~ 464 (467)
T Consensus 611 ~~~i~~~i~~~l~~~~ 626 (627)
T COG1154 611 AEGIARRILEWLKARS 626 (627)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 8999999999875406