HHsearch alignment for GI: 254780673 and conserved domain: PRK12571
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00 E-value=0 Score=342.54 Aligned_cols=308 Identities=23% Similarity=0.331 Sum_probs=253.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 00000000122355443113650699932434458866532364754081110116666278998999988718864456
Q gi|254780673|r 137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE 216 (467)
Q Consensus 137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~ 216 (467)
T Consensus 316 ~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stg----l~~f~~~~-p~R~~~~GIrE~~m~a~a~GlA~~G~~P~~~ 390 (642)
T PRK12571 316 PNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTG----LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (642)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC----CCCHHCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 876229999999999999741101020003677777----61010158-8655552455678999963476469962899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH
Q ss_conf 6666789999999998788674211776788879983-0244576444433216-8876322031386652210001055
Q gi|254780673|r 217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL 294 (467)
Q Consensus 217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll 294 (467)
T Consensus 391 -tf~~F~~ra~~qi~~~~al--------~~lpv~~v~~~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~ 461 (642)
T PRK12571 391 -IYSTFLQRGYDQVLHDVAL--------QKLPVRFVIDRAGLVGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML 461 (642)
T ss_pred -EECCHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf -9674455437887632551--------5986699996673247998764243778875479981899129999999999
Q ss_pred HHHHHC-CCCEEEECCCCCCCCCCCCCC--C--CCEECCCCCEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 565413-783476402123333345334--6--63121443114443168-74586025788888888753100467527
Q gi|254780673|r 295 KAAIRD-PNPVIFLENEILYGSSFEVPM--V--DDLVIPIGRARIHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAE 368 (467)
Q Consensus 295 ~~ai~~-~~Pvi~le~~~ly~~~~~~p~--~--~~~~~p~Gk~~i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~ 368 (467)
T Consensus 462 ~~al~~~~gP~~i-----~l~R~-~~~~~~~~~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~ 535 (642)
T PRK12571 462 RTAVAHDDGPIAV-----RYPRG-EGVGVEIPAVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVT 535 (642)
T ss_pred HHHHHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9998668998899-----95278-78887766421113564389942799998999860999999999999986699869
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCC
Q ss_conf 9733006857999999999871989999578876767899999999967764289829971777888889--66765608
Q gi|254780673|r 369 LIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLAL 446 (467)
Q Consensus 369 vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~ 446 (467)
T Consensus 536 Vv~~~~~kp~D~~~~~~~~~~~~~vv~~E~~~-~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~G 614 (642)
T PRK12571 536 VADARFVKPLDEALIAQLARRHRVLVTVEDGA-MGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAG 614 (642)
T ss_pred EECCCCCCCCCHHHHHHHHHHCCEEEEEECCC-CCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 98167378779999999970098899990785-12389999999997498778973899835887678499999999979
Q ss_pred CCHHHHHHHHHHHHCCCCC
Q ss_conf 9989999999998502002
Q gi|254780673|r 447 PNVDEIIESVESICYKRKA 465 (467)
Q Consensus 447 p~~~~I~~av~~v~~~~~~ 465 (467)
T Consensus 615 lt~e~Iv~~i~~~L~r~~~ 633 (642)
T PRK12571 615 LTAPDIAAQVTGALARLDG 633 (642)
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 3999999999999862669