HHsearch alignment for GI: 254780673 and conserved domain: PRK12571

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=100.00  E-value=0  Score=342.54  Aligned_cols=308  Identities=23%  Similarity=0.331  Sum_probs=253.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             00000000122355443113650699932434458866532364754081110116666278998999988718864456
Q gi|254780673|r  137 TSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVE  216 (467)
Q Consensus       137 ~~~~TvRea~~~a~~e~m~~d~~~~~~gedv~~~~g~f~~t~gl~~~fg~~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~  216 (467)
T Consensus       316 ~~~~~~~~~~g~~l~~la~~~~~lv~~sadl~~stg----l~~f~~~~-p~R~~~~GIrE~~m~a~a~GlA~~G~~P~~~  390 (642)
T PRK12571        316 PNAPSYTSVFGDELVKEAEEDSDIVAITAAMPSGTG----LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA  390 (642)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC----CCCHHCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             876229999999999999741101020003677777----61010158-8655552455678999963476469962899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCCCHHHHHHH-HHHHHHHCCCEEEEEECCHHCCCHH
Q ss_conf             6666789999999998788674211776788879983-0244576444433216-8876322031386652210001055
Q gi|254780673|r  217 FMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRG-PNGAAARVAAQHSQCY-AAWYSHVPGLKVVIPYTASDAKGLL  294 (467)
Q Consensus       217 ~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~-p~G~~~~~g~~Hs~~~-~~~~~~iPgl~V~~P~~~~d~~~ll  294 (467)
T Consensus       391 -tf~~F~~ra~~qi~~~~al--------~~lpv~~v~~~~GlvGeDGpTHq~iedla~lR~iPnl~V~~PaD~~E~~~a~  461 (642)
T PRK12571        391 -IYSTFLQRGYDQVLHDVAL--------QKLPVRFVIDRAGLVGADGATHAGMFDMAFLTCLPNLRVMAPADEAELRHML  461 (642)
T ss_pred             -EECCHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf             -9674455437887632551--------5986699996673247998764243778875479981899129999999999


Q ss_pred             HHHHHC-CCCEEEECCCCCCCCCCCCCC--C--CCEECCCCCEEEEECCC-CCEEEEHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             565413-783476402123333345334--6--63121443114443168-74586025788888888753100467527
Q gi|254780673|r  295 KAAIRD-PNPVIFLENEILYGSSFEVPM--V--DDLVIPIGRARIHRQGS-DVTIISFGIGMTYATKAAIELEKNGIDAE  368 (467)
Q Consensus       295 ~~ai~~-~~Pvi~le~~~ly~~~~~~p~--~--~~~~~p~Gk~~i~~~G~-ditii~~G~~~~~a~~aa~~L~~~gi~~~  368 (467)
T Consensus       462 ~~al~~~~gP~~i-----~l~R~-~~~~~~~~~~~~~~~~g~~~~~~~g~~dv~lia~Gs~v~~Al~Aa~~L~~~Gi~~~  535 (642)
T PRK12571        462 RTAVAHDDGPIAV-----RYPRG-EGVGVEIPAVGRVLGIGKGRVPREGRPDVAILSVGAHLHECLEAAELLEAEGISVT  535 (642)
T ss_pred             HHHHHCCCCCEEE-----EECCC-CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9998668998899-----95278-78887766421113564389942799998999860999999999999986699869


Q ss_pred             EEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--HHHHHHCC
Q ss_conf             9733006857999999999871989999578876767899999999967764289829971777888889--66765608
Q gi|254780673|r  369 LIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDYLDAPILTITGRDVPMPYA--ANLEKLAL  446 (467)
Q Consensus       369 vid~r~l~Pld~~~i~~sv~kt~~~i~vee~~~~gg~g~~i~~~i~e~~f~~L~~p~~ri~~~d~p~P~~--~~le~~~~  446 (467)
T Consensus       536 Vv~~~~~kp~D~~~~~~~~~~~~~vv~~E~~~-~gG~g~~v~~~~~~~g~~~~~~~~~~~Gi~d~Fg~sa~~~~l~~~~G  614 (642)
T PRK12571        536 VADARFVKPLDEALIAQLARRHRVLVTVEDGA-MGGFGAHVLHHLADAGLLDGGLKLRTLGLPDRFIDHASPEEMYAEAG  614 (642)
T ss_pred             EECCCCCCCCCHHHHHHHHHHCCEEEEEECCC-CCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             98167378779999999970098899990785-12389999999997498778973899835887678499999999979


Q ss_pred             CCHHHHHHHHHHHHCCCCC
Q ss_conf             9989999999998502002
Q gi|254780673|r  447 PNVDEIIESVESICYKRKA  465 (467)
Q Consensus       447 p~~~~I~~av~~v~~~~~~  465 (467)
T Consensus       615 lt~e~Iv~~i~~~L~r~~~  633 (642)
T PRK12571        615 LTAPDIAAQVTGALARLDG  633 (642)
T ss_pred             CCHHHHHHHHHHHHHHCCC
T ss_conf             3999999999999862669