HHsearch alignment for GI: 254780673 and conserved domain: TIGR01108
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=90.82 E-value=0.28 Score=28.56 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEC--CCC-----CCCCC-CCCCCCH--------HHHCCCCCEECCCCCH----HH
Q ss_conf 000000122355443113650699932--434-----45886-6532364--------7540811101166662----78
Q gi|254780673|r 139 SITVREALRDAIAEEMRRDKDVFIMGE--EVA-----EYQGA-YKVTQGL--------LQEFGCERVIDTPITE----HG 198 (467)
Q Consensus 139 ~~TvRea~~~a~~e~m~~d~~~~~~ge--dv~-----~~~g~-f~~t~gl--------~~~fg~~R~~d~pi~E----~~ 198 (467)
T Consensus 3 Dv~LRDaHQSL~ATRmRteDMLPi~~~LD~vGfwSLEvWGGATFDaC~RFL~EDPW~RLR~l-k~~~pnT~L~MLLRGQN 81 (616)
T TIGR01108 3 DVVLRDAHQSLIATRMRTEDMLPILEKLDDVGFWSLEVWGGATFDACIRFLNEDPWERLREL-KKALPNTKLQMLLRGQN 81 (616)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHH-HHHCCCCCHHHHHCCCC
T ss_conf 01352067766753057313689998750249556520244105578442488855899999-97357875123420454
Q ss_pred HHH
Q ss_conf 998
Q gi|254780673|r 199 FAG 201 (467)
Q Consensus 199 ~~G 201 (467)
T Consensus 82 LlG 84 (616)
T TIGR01108 82 LLG 84 (616)
T ss_pred CCC
T ss_conf 234