HHsearch alignment for GI: 254780673 and conserved domain: cd07034
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.11 E-value=0.0038 Score=41.65 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH-
Q ss_conf 1101166662789989999887188644566666789999999998788674211776788879983024457644443-
Q gi|254780673|r 187 ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQH- 265 (467)
Q Consensus 187 ~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~H- 265 (467)
T Consensus 42 ~~~~~~e-~E~~A~~~~~Gas~aG~r~~t~-ts~~Gl~l~~e~l~~a~~---------~~~p~Vi~~~~r~g~~~~~~~~ 110 (160)
T cd07034 42 GVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPKP 110 (160)
T ss_pred EEEEEEC-CHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHH---------CCCCEEEEEEECCCCCCCCCCC
T ss_conf 3899855-6899999999998639873743-065339888879999984---------7888899997458886545554
Q ss_pred HHHHHHHHHHHCC--CEEEEEECCHHCCCHHHHHH----HCCCCEEEE
Q ss_conf 3216887632203--13866522100010555654----137834764
Q gi|254780673|r 266 SQCYAAWYSHVPG--LKVVIPYTASDAKGLLKAAI----RDPNPVIFL 307 (467)
Q Consensus 266 s~~~~~~~~~iPg--l~V~~P~~~~d~~~ll~~ai----~~~~Pvi~l 307 (467)
T Consensus 111 ~q~-D~~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~ 157 (160)
T cd07034 111 DQS-DLMAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVL 157 (160)
T ss_pred CCH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 417-89999967998799937999999999999999999868998995