HHsearch alignment for GI: 254780673 and conserved domain: cd07034

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.11  E-value=0.0038  Score=41.65  Aligned_cols=109  Identities=21%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH-
Q ss_conf             1101166662789989999887188644566666789999999998788674211776788879983024457644443-
Q gi|254780673|r  187 ERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYMSGGQITTSIVFRGPNGAAARVAAQH-  265 (467)
Q Consensus       187 ~R~~d~pi~E~~~~G~a~G~A~~G~~Piv~~~~~~f~~~a~dqi~n~~ak~~~~~gg~~~~p~v~r~p~G~~~~~g~~H-  265 (467)
T Consensus        42 ~~~~~~e-~E~~A~~~~~Gas~aG~r~~t~-ts~~Gl~l~~e~l~~a~~---------~~~p~Vi~~~~r~g~~~~~~~~  110 (160)
T cd07034          42 GVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPKP  110 (160)
T ss_pred             EEEEEEC-CHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHH---------CCCCEEEEEEECCCCCCCCCCC
T ss_conf             3899855-6899999999998639873743-065339888879999984---------7888899997458886545554


Q ss_pred             HHHHHHHHHHHCC--CEEEEEECCHHCCCHHHHHH----HCCCCEEEE
Q ss_conf             3216887632203--13866522100010555654----137834764
Q gi|254780673|r  266 SQCYAAWYSHVPG--LKVVIPYTASDAKGLLKAAI----RDPNPVIFL  307 (467)
Q Consensus       266 s~~~~~~~~~iPg--l~V~~P~~~~d~~~ll~~ai----~~~~Pvi~l  307 (467)
T Consensus       111 ~q~-D~~~~~~~g~~~~vl~p~~~qE~~d~~~~A~~lae~~~~Pvi~~  157 (160)
T cd07034         111 DQS-DLMAARYGGHPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVL  157 (160)
T ss_pred             CCH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             417-89999967998799937999999999999999999868998995