BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(467 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 467
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/467 (100%), Positives = 467/467 (100%)
Query: 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60
MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL
Sbjct: 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60
Query: 61 CPNGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDH 120
CPNGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDH
Sbjct: 61 CPNGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDH 120
Query: 121 QKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGL 180
QKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGL
Sbjct: 121 QKSKNDIQDSSFAHAPTSSITVREALRDAIAEEMRRDKDVFIMGEEVAEYQGAYKVTQGL 180
Query: 181 LQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYM 240
LQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYM
Sbjct: 181 LQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAMQAIDQIINSAAKTRYM 240
Query: 241 SGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRD 300
SGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRD
Sbjct: 241 SGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIRD 300
Query: 301 PNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIEL 360
PNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIEL
Sbjct: 301 PNPVIFLENEILYGSSFEVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIEL 360
Query: 361 EKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDY 420
EKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDY
Sbjct: 361 EKNGIDAELIDLRTIRPMDWQTIFESVKKTGRLVTVEEGYPQSSVGSTIANQVQRKVFDY 420
Query: 421 LDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESICYKRKAKS 467
LDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESICYKRKAKS
Sbjct: 421 LDAPILTITGRDVPMPYAANLEKLALPNVDEIIESVESICYKRKAKS 467
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 107 bits (266), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 5 VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNG 64
+TMPSLSPTMTEG +AKW K EGD I GDI+ E+ETDKA+ME ES+DEGI+ +IL P G
Sbjct: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
Query: 65 TKNVKVNTPIAAILQEG 81
T+N+ VN+PI IL +
Sbjct: 66 TENIAVNSPILNILMDS 82
>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 436
Score = 40.4 bits (93), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 1 MPILVTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKIL 60
M + +PSL ++ E + W K G+ ++ G+I+ E+ETDK +EV S G L ++
Sbjct: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
Query: 61 CPNG 64
G
Sbjct: 79 VAKG 82
>gi|254780602|ref|YP_003065015.1| aspartate aminotransferase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 400
Score = 26.6 bits (57), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 146 LRDAIAEEMRRDKDVFIMGEEVAEYQGAYKV 176
LR+AI E+ RRD D+ +++ GA V
Sbjct: 73 LREAIVEKFRRDNDLHYTSDQIIVGTGAKHV 103
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 1 MPILVTMPSLSPTMTE--GNIAKWKKNEGDLIKQGDII 36
+P +T+ LS M+E ++ K+ EG ++K GD+I
Sbjct: 304 VPETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVI 341
>gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 185
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 175 KVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAM-----QAIDQ 229
++ + + QEF + V+ P E +G+G S A K E + A+ I +
Sbjct: 17 RIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKK-AESAAADLALITGQKPVITR 75
Query: 230 IINSAAKTRYMSGGQITTSIVFRGPN 255
S A + +G I T + RG N
Sbjct: 76 ARRSIAGFKLRTGMPIGTKVTLRGTN 101
>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 24.6 bits (52), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 127 IQDSSFAHAPTSSITVREALRDAIAEEMRRDKDV 160
+ D SF S+I+V LR+ +E+R DV
Sbjct: 43 LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
>gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 221
Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 186 CERVIDTPITEHGFAGIGIGASFAGL----KPIVEFMT----------FNFAMQAIDQI- 230
C+ V+ + ++G+ + +GA A + KP+ F + F F +Q D +
Sbjct: 33 CQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLL 92
Query: 231 -INSAAKTRYMSGGQ---ITTSIVFRGPNGAAAR 260
+ S Y + GQ +T + +G +GA R
Sbjct: 93 PVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKR 126
>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
Length = 373
Score = 23.5 bits (49), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 341 VTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRPM 378
V +ISF G A + A +L + G + IDL +I +
Sbjct: 171 VILISFVTGAVIAQQGAFQLSQFGAEIFSIDLMSILQL 208
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,236
Number of Sequences: 1233
Number of extensions: 12111
Number of successful extensions: 45
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 12
length of query: 467
length of database: 328,796
effective HSP length: 77
effective length of query: 390
effective length of database: 233,855
effective search space: 91203450
effective search space used: 91203450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)