HHsearch alignment for GI: 254780674 and conserved domain: TIGR01936

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.

Probab=90.29  E-value=0.17  Score=29.76  Aligned_cols=53  Identities=30%  Similarity=0.405  Sum_probs=38.2

Q ss_pred             EEEEEEEECCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECCCCCEEECCCEEE
Q ss_conf             99999981689785279859999526531--245368786899999248860403585599
Q gi|254780674|r   18 GKLAKWIKQEGDKISPGDILCEIETDKAI--MEFESVDEGIIDEILVPAGTENIAVNSPIL   76 (423)
Q Consensus        18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~--~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~   76 (423)
T Consensus        38 g~~p~~~v~~GD~V~~G~~L~~---~K~~P~v~fTsPvsG~V~ai~--RG-~KR~Llsvvi   92 (466)
T TIGR01936        38 GLRPKMKVRPGDKVKAGQVLFE---DKKNPGVKFTSPVSGEVVAIN--RG-AKRVLLSVVI   92 (466)
T ss_pred             CCCCEEEEEECCEEEECCHHHH---HCCCCCCEEECCCCCEEEEEE--CC-CCCEEEEEEE
T ss_conf             8665067700770100222333---026898568617775699974--18-9724647888