Query gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 423
No_of_seqs 158 out of 6238
Neff 7.7
Searched_HMMs 39220
Date Sun May 29 21:04:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780674.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11855 dihydrolipoamide acet 100.0 0 0 919.7 30.0 417 2-423 1-547 (549)
2 PRK05704 dihydrolipoamide succ 100.0 0 0 905.8 30.5 404 2-423 1-404 (406)
3 TIGR01349 PDHac_trf_mito pyruv 100.0 0 0 901.1 21.1 419 5-423 1-584 (584)
4 PRK11854 aceF dihydrolipoamide 100.0 0 0 883.9 24.9 305 117-423 324-630 (630)
5 TIGR01347 sucB 2-oxoglutarate 100.0 0 0 875.2 17.7 410 4-423 1-433 (435)
6 TIGR01348 PDHac_trf_long pyruv 100.0 0 0 851.0 20.8 420 3-423 206-655 (655)
7 TIGR02927 SucB_Actino 2-oxoglu 100.0 0 0 828.5 15.1 412 2-417 134-598 (607)
8 PTZ00144 dihydrolipoamide succ 100.0 0 0 797.3 28.1 373 3-423 57-429 (430)
9 COG0508 AceF Pyruvate/2-oxoglu 100.0 0 0 784.6 27.3 401 2-423 1-403 (404)
10 PRK11856 branched-chain alpha- 100.0 0 0 744.4 26.9 323 3-423 1-324 (324)
11 KOG0557 consensus 100.0 0 0 717.3 20.9 410 3-423 38-470 (470)
12 PRK11857 dihydrolipoamide acet 100.0 0 0 673.2 17.4 304 117-423 1-316 (316)
13 KOG0558 consensus 100.0 0 0 652.2 17.5 405 3-423 64-471 (474)
14 KOG0559 consensus 100.0 0 0 624.7 16.5 381 4-423 73-455 (457)
15 pfam00198 2-oxoacid_dh 2-oxoac 100.0 0 0 539.7 16.0 229 191-423 2-231 (231)
16 PRK12270 kgd alpha-ketoglutara 100.0 0 0 327.1 13.6 221 192-416 119-354 (1234)
17 TIGR02927 SucB_Actino 2-oxoglu 99.9 6.2E-28 1.6E-32 206.5 4.9 82 2-84 1-82 (607)
18 PRK11855 dihydrolipoamide acet 99.9 8.6E-26 2.2E-30 192.2 10.6 80 3-83 117-196 (549)
19 PRK11892 pyruvate dehydrogenas 99.9 6.8E-26 1.7E-30 192.9 9.3 87 2-88 1-87 (464)
20 PRK11854 aceF dihydrolipoamide 99.9 1.8E-24 4.6E-29 183.4 10.8 81 2-85 1-81 (630)
21 cd06663 Biotinyl_lipoyl_domain 99.8 1.2E-20 3E-25 157.9 9.7 73 5-78 1-73 (73)
22 TIGR01348 PDHac_trf_long pyruv 99.8 1.4E-20 3.6E-25 157.4 9.0 81 4-85 1-81 (655)
23 cd06849 lipoyl_domain Lipoyl d 99.8 7.8E-20 2E-24 152.4 9.7 74 4-78 1-74 (74)
24 pfam00364 Biotin_lipoyl Biotin 99.8 5.9E-19 1.5E-23 146.5 8.6 73 4-78 1-73 (73)
25 TIGR01349 PDHac_trf_mito pyruv 99.8 8.8E-19 2.2E-23 145.3 6.5 81 4-84 128-208 (584)
26 cd06850 biotinyl_domain The bi 99.4 1.7E-12 4.3E-17 103.3 8.5 61 17-78 7-67 (67)
27 PRK13757 chloramphenicol acety 99.4 1.8E-11 4.6E-16 96.5 13.3 178 215-417 29-214 (219)
28 PRK05641 putative acetyl-CoA c 99.2 6.8E-11 1.7E-15 92.6 8.6 61 17-78 87-147 (148)
29 pfam00302 CAT Chloramphenicol 99.2 7.6E-10 1.9E-14 85.6 12.7 175 215-411 24-205 (206)
30 COG0511 AccB Biotin carboxyl c 99.2 1.4E-10 3.6E-15 90.4 8.3 62 17-79 78-139 (140)
31 PRK06549 acetyl-CoA carboxylas 99.2 1.9E-10 4.9E-15 89.6 8.5 60 18-78 72-131 (132)
32 PRK08225 acetyl-CoA carboxylas 99.1 5E-10 1.3E-14 86.8 8.6 62 17-79 9-70 (70)
33 PRK05889 putative acetyl-CoA c 99.1 7.9E-10 2E-14 85.5 8.8 62 17-79 10-71 (71)
34 PRK12999 pyruvate carboxylase; 99.0 2.2E-09 5.7E-14 82.4 8.4 22 255-276 719-740 (1147)
35 pfam02817 E3_binding e3 bindin 98.9 2E-10 5E-15 89.5 0.4 39 118-156 1-39 (39)
36 PRK07051 hypothetical protein; 98.9 1.2E-08 3E-13 77.6 8.7 73 1-80 1-80 (80)
37 PRK06302 acetyl-CoA carboxylas 98.8 1.4E-08 3.4E-13 77.2 6.6 56 23-79 100-155 (155)
38 TIGR01108 oadA oxaloacetate de 98.8 9.6E-09 2.5E-13 78.2 4.7 57 18-75 560-616 (616)
39 TIGR02712 urea_carbox urea car 98.7 7.2E-08 1.8E-12 72.3 7.4 63 16-79 1164-1226(1226)
40 COG4845 Chloramphenicol O-acet 98.6 7E-07 1.8E-11 65.7 11.4 184 211-420 24-216 (219)
41 TIGR01235 pyruv_carbox pyruvat 98.5 5.4E-07 1.4E-11 66.5 6.7 67 11-79 1103-1169(1169)
42 COG1038 PycA Pyruvate carboxyl 98.3 2.4E-06 6E-11 62.2 6.3 32 125-156 149-185 (1149)
43 KOG0368 consensus 98.1 1.1E-05 2.8E-10 57.7 6.5 67 15-83 691-757 (2196)
44 PRK11578 macrolide transporter 97.9 6.1E-05 1.5E-09 52.8 7.0 55 15-81 18-72 (347)
45 PRK03598 hypothetical protein; 97.7 0.00022 5.6E-09 49.1 8.1 55 23-82 24-78 (331)
46 PRK10476 multidrug resistance 97.7 0.00037 9.3E-09 47.6 8.3 50 28-82 36-85 (348)
47 PRK11556 multidrug efflux syst 97.6 0.00043 1.1E-08 47.1 7.8 36 46-82 87-122 (415)
48 PRK10559 p-hydroxybenzoic acid 97.5 0.00049 1.2E-08 46.7 7.7 35 47-82 48-82 (310)
49 TIGR03077 not_gcvH glycine cle 97.4 0.00018 4.5E-09 49.7 4.1 44 19-63 33-76 (110)
50 KOG0238 consensus 97.4 0.00026 6.5E-09 48.6 4.3 18 304-321 451-468 (670)
51 PRK00624 glycine cleavage syst 97.3 0.00027 6.9E-09 48.5 4.2 44 19-63 34-77 (113)
52 cd06848 GCS_H Glycine cleavage 97.3 0.00038 9.6E-09 47.5 4.7 45 19-64 32-76 (96)
53 PRK09859 multidrug efflux syst 97.3 0.0014 3.7E-08 43.6 7.4 37 45-82 60-96 (385)
54 PRK09578 periplasmic multidrug 97.2 0.003 7.6E-08 41.5 7.9 56 25-82 43-98 (385)
55 COG0509 GcvH Glycine cleavage 97.1 0.00052 1.3E-08 46.5 3.8 38 24-61 46-83 (131)
56 PRK13380 glycine cleavage syst 97.1 0.00063 1.6E-08 46.0 3.9 43 20-63 42-84 (132)
57 PRK01202 glycine cleavage syst 97.1 0.00074 1.9E-08 45.5 4.2 41 24-64 44-84 (127)
58 pfam01597 GCV_H Glycine cleava 97.1 0.00078 2E-08 45.4 4.2 41 24-64 38-78 (122)
59 PRK09783 copper/silver efflux 96.8 0.013 3.4E-07 37.2 8.6 37 44-81 119-156 (407)
60 TIGR00531 BCCP acetyl-CoA carb 96.8 0.0014 3.5E-08 43.7 3.6 57 22-79 102-158 (159)
61 PRK05352 Na(+)-translocating N 96.7 0.0026 6.7E-08 41.9 4.2 43 19-62 40-82 (448)
62 pfam05896 NQRA Na(+)-transloca 96.6 0.0031 8E-08 41.3 4.1 44 18-64 38-83 (257)
63 cd06253 M14_ASTE_ASPA_like_3 A 96.4 0.022 5.6E-07 35.7 7.7 18 133-150 82-99 (298)
64 cd06250 M14_PaAOTO_like An unc 96.1 0.032 8.2E-07 34.6 7.3 15 47-61 3-17 (359)
65 TIGR00527 gcvH glycine cleavag 95.9 0.007 1.8E-07 39.0 3.1 38 24-61 43-80 (132)
66 PTZ00144 dihydrolipoamide succ 95.7 0.028 7.3E-07 34.9 5.6 30 14-43 105-134 (430)
67 pfam00529 HlyD HlyD family sec 95.7 0.013 3.2E-07 37.3 3.7 36 46-82 2-37 (304)
68 PRK05704 dihydrolipoamide succ 95.5 0.042 1.1E-06 33.8 5.7 30 15-44 51-80 (406)
69 cd06850 biotinyl_domain The bi 95.3 0.034 8.6E-07 34.4 4.7 38 48-86 1-38 (67)
70 pfam07247 AATase Alcohol acety 95.2 0.28 7.2E-06 28.3 9.6 157 250-415 269-479 (479)
71 PRK07051 hypothetical protein; 95.0 0.029 7.5E-07 34.8 3.8 24 18-41 56-79 (80)
72 PRK11892 pyruvate dehydrogenas 95.0 0.035 9E-07 34.3 4.2 34 50-84 12-45 (464)
73 TIGR01843 type_I_hlyD type I s 95.0 0.018 4.5E-07 36.3 2.6 36 47-83 44-79 (434)
74 PRK08225 acetyl-CoA carboxylas 95.0 0.044 1.1E-06 33.7 4.6 38 47-85 2-39 (70)
75 COG0511 AccB Biotin carboxyl c 94.8 0.05 1.3E-06 33.3 4.6 34 46-80 70-103 (140)
76 TIGR03309 matur_yqeB selenium- 94.7 0.11 2.8E-06 31.0 5.9 55 20-80 174-228 (256)
77 PRK03598 hypothetical protein; 94.6 0.081 2.1E-06 31.9 5.2 30 16-45 50-79 (331)
78 PRK06748 hypothetical protein; 94.2 0.33 8.3E-06 27.8 7.6 65 16-81 12-77 (84)
79 KOG0559 consensus 94.2 0.15 3.8E-06 30.1 5.7 27 17-43 123-149 (457)
80 PRK11856 branched-chain alpha- 94.2 0.068 1.7E-06 32.4 4.0 26 15-40 50-75 (324)
81 TIGR01108 oadA oxaloacetate de 94.1 0.062 1.6E-06 32.7 3.6 10 285-294 487-496 (616)
82 PRK05889 putative acetyl-CoA c 94.0 0.085 2.2E-06 31.7 4.2 38 47-85 3-40 (71)
83 pfam00529 HlyD HlyD family sec 93.9 0.091 2.3E-06 31.6 4.2 34 16-49 9-42 (304)
84 PRK12784 hypothetical protein; 93.7 0.46 1.2E-05 26.8 7.6 65 16-81 12-77 (84)
85 COG4656 RnfC Predicted NADH:ub 93.7 0.083 2.1E-06 31.8 3.7 43 21-65 45-90 (529)
86 COG0508 AceF Pyruvate/2-oxoglu 93.6 0.09 2.3E-06 31.6 3.7 33 51-84 13-45 (404)
87 PRK06549 acetyl-CoA carboxylas 92.8 0.2 5.1E-06 29.3 4.5 38 46-84 63-100 (132)
88 KOG3373 consensus 92.7 0.079 2E-06 32.0 2.3 54 6-64 74-127 (172)
89 PRK05641 putative acetyl-CoA c 92.6 0.24 6E-06 28.8 4.7 36 48-84 81-116 (148)
90 PRK10476 multidrug resistance 92.5 0.42 1.1E-05 27.1 5.8 30 16-45 57-86 (348)
91 TIGR00998 8a0101 efflux pump m 92.5 0.17 4.3E-06 29.8 3.8 36 47-83 43-79 (379)
92 cd06663 Biotinyl_lipoyl_domain 92.4 0.18 4.7E-06 29.5 3.9 36 50-86 9-44 (73)
93 TIGR02645 ARCH_P_rylase putati 92.2 0.11 2.9E-06 30.9 2.7 27 301-327 285-311 (499)
94 PRK12999 pyruvate carboxylase; 92.2 0.5 1.3E-05 26.6 5.9 14 52-65 360-373 (1147)
95 COG1726 NqrA Na+-transporting 92.2 0.22 5.6E-06 29.0 4.1 42 22-64 42-83 (447)
96 PRK11556 multidrug efflux syst 92.1 0.19 4.9E-06 29.4 3.7 29 16-44 94-122 (415)
97 cd06849 lipoyl_domain Lipoyl d 92.0 0.25 6.4E-06 28.6 4.2 35 51-86 11-45 (74)
98 cd06255 M14_ASTE_ASPA_like_5 A 91.9 0.67 1.7E-05 25.8 6.2 17 134-150 82-98 (293)
99 TIGR01945 rnfC electron transp 91.5 0.18 4.5E-06 29.6 3.0 40 21-61 43-82 (444)
100 PRK11578 macrolide transporter 91.5 0.28 7.1E-06 28.3 3.9 32 16-47 45-76 (347)
101 PRK09282 pyruvate carboxylase 91.4 0.36 9.2E-06 27.5 4.4 32 48-80 513-544 (580)
102 pfam00364 Biotin_lipoyl Biotin 90.6 0.31 7.9E-06 28.0 3.5 31 54-86 14-44 (73)
103 TIGR01936 nqrA NADH:ubiquinone 90.3 0.17 4.3E-06 29.8 1.9 53 18-76 38-92 (466)
104 PRK05035 electron transport co 90.1 0.46 1.2E-05 26.9 4.0 67 15-84 49-117 (725)
105 pfam02749 QRPTase_N Quinolinat 89.7 0.41 1E-05 27.2 3.5 23 21-43 47-69 (88)
106 PRK09578 periplasmic multidrug 89.6 0.58 1.5E-05 26.2 4.2 29 16-44 70-98 (385)
107 pfam09891 DUF2118 Uncharacteri 89.5 1.3 3.4E-05 23.7 6.0 45 16-60 86-131 (149)
108 TIGR00078 nadC nicotinate-nucl 89.2 0.4 1E-05 27.2 3.2 95 199-375 170-267 (276)
109 PRK09859 multidrug efflux syst 88.9 0.72 1.8E-05 25.5 4.3 29 16-44 68-96 (385)
110 TIGR01843 type_I_hlyD type I s 88.8 0.46 1.2E-05 26.9 3.2 39 15-57 49-87 (434)
111 PRK09016 quinolinate phosphori 88.1 0.47 1.2E-05 26.8 2.9 24 58-82 87-110 (296)
112 COG0845 AcrA Membrane-fusion p 88.0 0.66 1.7E-05 25.8 3.6 37 44-81 64-100 (372)
113 pfam07831 PYNP_C Pyrimidine nu 88.0 0.41 1.1E-05 27.1 2.6 28 17-44 30-57 (75)
114 PRK06978 nicotinate-nucleotide 87.6 0.66 1.7E-05 25.8 3.4 28 55-83 75-102 (288)
115 TIGR02971 heterocyst_DevB ABC 86.6 0.25 6.5E-06 28.6 0.9 36 47-83 14-55 (363)
116 COG0157 NadC Nicotinate-nucleo 86.4 0.85 2.2E-05 25.1 3.4 39 44-83 34-90 (280)
117 PRK04350 thymidine phosphoryla 86.4 0.92 2.3E-05 24.8 3.6 14 145-158 119-132 (502)
118 pfam00358 PTS_EIIA_1 phosphoen 86.4 0.76 1.9E-05 25.4 3.2 11 49-59 6-16 (133)
119 PRK07896 nicotinate-nucleotide 86.3 0.85 2.2E-05 25.1 3.4 30 53-83 72-101 (288)
120 cd00210 PTS_IIA_glc PTS_IIA, P 85.8 0.6 1.5E-05 26.1 2.4 12 48-59 37-48 (124)
121 PRK06106 nicotinate-nucleotide 85.0 1.1 2.7E-05 24.4 3.4 54 306-375 217-270 (281)
122 COG4908 Uncharacterized protei 85.0 3 7.7E-05 21.4 8.7 157 249-416 236-434 (439)
123 TIGR02644 Y_phosphoryl pyrimid 84.9 1 2.6E-05 24.5 3.3 16 263-278 309-324 (425)
124 pfam02666 PS_Dcarbxylase Phosp 84.5 2.8 7.3E-05 21.5 5.4 13 48-60 22-34 (201)
125 PRK05848 nicotinate-nucleotide 84.0 1.3 3.4E-05 23.8 3.5 26 58-84 59-84 (272)
126 PRK08385 nicotinate-nucleotide 83.7 1.4 3.6E-05 23.6 3.5 63 306-379 208-270 (279)
127 cd01573 modD_like ModD; Quinol 83.6 1.4 3.5E-05 23.7 3.4 42 42-84 26-83 (272)
128 PRK09439 glucose-specific PTS 82.8 1.3 3.3E-05 23.8 3.0 38 43-81 17-57 (169)
129 PRK06543 nicotinate-nucleotide 82.6 1.4 3.5E-05 23.7 3.1 28 55-83 64-91 (281)
130 COG1566 EmrA Multidrug resista 82.0 2.1 5.4E-05 22.4 3.9 36 47-83 54-89 (352)
131 PRK06096 molybdenum transport 81.5 1.6 4.1E-05 23.2 3.1 42 41-83 30-87 (284)
132 PRK09824 beta-glucoside-specif 81.5 2.2 5.7E-05 22.3 3.9 17 42-58 35-51 (625)
133 TIGR00830 PTBA PTS system, glu 81.5 1.1 2.8E-05 24.3 2.3 27 19-45 88-114 (129)
134 PRK08072 nicotinate-nucleotide 81.3 1.9 4.9E-05 22.7 3.5 28 55-83 63-90 (277)
135 PRK05742 nicotinate-nucleotide 80.9 1.7 4.4E-05 23.0 3.1 54 306-375 214-267 (277)
136 cd01568 QPRTase_NadC Quinolina 80.6 1.6 4.1E-05 23.2 2.9 30 54-84 55-84 (269)
137 cd01572 QPRTase Quinolinate ph 80.4 1.7 4.3E-05 23.1 2.9 29 54-83 56-84 (268)
138 PRK07428 nicotinate-nucleotide 80.3 2.1 5.3E-05 22.5 3.4 39 45-84 40-96 (285)
139 pfam02458 Transferase Transfer 79.0 2.5 6.5E-05 21.9 3.5 15 254-268 257-271 (432)
140 COG2190 NagE Phosphotransferas 78.7 1.9 4.8E-05 22.8 2.7 15 46-60 5-19 (156)
141 pfam06898 YqfD Putative stage 77.7 5.4 0.00014 19.7 4.8 31 46-76 189-225 (383)
142 COG1155 NtpA Archaeal/vacuolar 77.5 5.5 0.00014 19.7 6.4 58 25-84 122-181 (588)
143 TIGR01995 PTS-II-ABC-beta PTS 77.4 0.96 2.4E-05 24.7 0.9 32 46-78 509-543 (660)
144 TIGR00999 8a0102 Membrane Fusi 76.4 3.3 8.3E-05 21.2 3.4 35 47-82 105-139 (284)
145 PRK06559 nicotinate-nucleotide 75.0 4 0.0001 20.6 3.6 59 306-380 222-280 (290)
146 COG0213 DeoA Thymidine phospho 73.3 4.3 0.00011 20.3 3.4 17 263-279 304-320 (435)
147 PRK10255 N-acetyl glucosamine 72.5 7.3 0.00019 18.8 6.5 16 135-150 426-441 (648)
148 TIGR01043 ATP_syn_A_arch ATP s 71.8 7.6 0.00019 18.7 6.4 56 24-83 122-181 (584)
149 TIGR02946 acyl_WS_DGAT acyltra 71.5 7.7 0.0002 18.7 7.1 150 250-420 280-485 (487)
150 cd00516 PRTase_typeII Phosphor 68.8 6.9 0.00018 19.0 3.6 30 54-84 48-77 (281)
151 TIGR02876 spore_yqfD sporulati 68.1 3.7 9.5E-05 20.8 2.1 37 41-77 186-228 (406)
152 PRK10871 nlpD lipoprotein NlpD 65.1 4.5 0.00011 20.2 2.1 12 128-139 128-139 (374)
153 pfam00668 Condensation Condens 62.7 11 0.00029 17.5 8.2 27 390-416 131-157 (300)
154 TIGR01720 NRPS-para261 non-rib 62.6 11 0.00029 17.5 6.3 78 329-418 53-141 (171)
155 pfam01333 Apocytochr_F_C Apocy 56.1 7.3 0.00019 18.8 1.8 16 49-64 5-20 (118)
156 cd01134 V_A-ATPase_A V/A-type 55.4 15 0.00038 16.7 6.4 57 24-83 54-113 (369)
157 PRK02597 DNA-directed RNA poly 54.1 16 0.0004 16.6 4.2 35 23-57 410-451 (1295)
158 TIGR01830 3oxo_ACP_reduc 3-oxo 53.1 8 0.00021 18.5 1.7 51 295-363 86-145 (238)
159 pfam01551 Peptidase_M23 Peptid 52.1 12 0.0003 17.5 2.3 56 15-80 19-74 (96)
160 CHL00117 rpoC2 RNA polymerase 51.4 17 0.00044 16.3 4.1 36 23-58 409-452 (1350)
161 pfam00767 Poty_coat Potyvirus 48.4 12 0.00031 17.4 2.0 79 229-326 60-141 (237)
162 TIGR02013 rpoB DNA-directed RN 47.5 10 0.00026 17.8 1.5 25 24-57 853-877 (1449)
163 KOG2293 consensus 45.9 16 0.00042 16.5 2.3 57 338-410 486-542 (547)
164 cd01571 NAPRTase_B Nicotinate 42.8 23 0.0006 15.4 2.7 22 61-83 57-78 (302)
165 TIGR02326 transamin_PhnW 2-ami 41.7 9.6 0.00025 18.0 0.6 96 251-350 241-348 (366)
166 CHL00037 petA cytochrome f 41.2 17 0.00043 16.4 1.8 15 135-149 90-104 (320)
167 CHL00006 consensus 38.9 27 0.00068 15.0 3.8 37 22-58 405-449 (1372)
168 TIGR01730 RND_mfp efflux trans 38.6 23 0.00057 15.5 2.1 39 45-84 25-63 (333)
169 pfam11160 DUF2945 Protein of u 37.8 28 0.00071 14.9 4.0 34 13-46 10-49 (62)
170 pfam10011 DUF2254 Predicted me 37.4 28 0.00072 14.9 2.7 53 314-370 251-303 (369)
171 PRK10126 tyrosine phosphatase; 37.1 9.3 0.00024 18.1 -0.0 34 120-157 43-76 (147)
172 PRK11649 hypothetical protein; 36.5 19 0.00049 16.0 1.5 29 388-417 386-414 (418)
173 pfam05440 MtrB Tetrahydrometha 36.0 26 0.00067 15.1 2.1 48 288-335 8-57 (97)
174 KOG0975 consensus 33.9 32 0.00081 14.5 3.5 59 280-340 255-318 (379)
175 TIGR00868 hCaCC calcium-activa 33.5 33 0.00083 14.5 3.5 58 337-408 745-802 (874)
176 TIGR02386 rpoC_TIGR DNA-direct 32.5 34 0.00086 14.4 4.5 58 19-80 1132-1210(1552)
177 PRK04192 V-type ATP synthase s 31.7 35 0.00088 14.3 5.8 20 37-56 40-59 (585)
178 PRK07188 nicotinate phosphorib 31.7 35 0.00089 14.3 2.8 22 61-83 82-103 (355)
179 KOG0287 consensus 30.5 35 0.00089 14.3 2.0 43 306-348 329-379 (442)
180 PRK00965 tetrahydromethanopter 30.1 37 0.00094 14.1 2.1 48 288-335 9-58 (108)
181 PRK09213 purine operon repress 29.6 32 0.00082 14.5 1.7 11 207-217 89-99 (274)
182 COG1725 Predicted transcriptio 28.2 17 0.00043 16.4 0.1 19 123-141 35-53 (125)
183 pfam09222 Fim-adh_lectin Fimbr 27.2 41 0.0011 13.8 2.9 106 287-392 47-167 (170)
184 TIGR01743 purR_Bsub pur operon 25.8 36 0.00093 14.1 1.4 12 206-217 86-97 (269)
185 PRK13826 Dtr system oriT relax 25.6 44 0.0011 13.6 2.2 21 18-42 127-147 (1102)
186 PRK11391 etp phosphotyrosine-p 25.4 21 0.00052 15.8 0.1 34 120-157 43-76 (144)
187 KOG0095 consensus 25.4 44 0.0011 13.6 4.0 11 321-331 167-177 (213)
188 KOG0100 consensus 25.3 43 0.0011 13.7 1.7 29 386-414 527-555 (663)
189 CHL00018 rpoC1 RNA polymerase 25.3 45 0.0011 13.6 2.9 73 247-344 456-543 (668)
190 TIGR00097 HMP-P_kinase phospho 24.6 3.8 9.7E-05 20.7 -3.8 109 232-342 54-178 (264)
191 PTZ00156 60S ribosomal protein 23.8 48 0.0012 13.4 4.7 105 279-410 54-164 (172)
192 pfam04275 P-mevalo_kinase Phos 23.8 17 0.00044 16.3 -0.6 38 121-158 30-67 (115)
193 smart00226 LMWPc Low molecular 23.5 24 0.00062 15.3 0.2 32 121-157 41-72 (140)
194 TIGR00375 TIGR00375 conserved 22.4 20 0.00051 15.9 -0.5 33 302-334 341-374 (384)
195 TIGR02994 ectoine_eutE ectoine 21.8 45 0.0011 13.5 1.2 28 124-151 92-122 (325)
196 COG3453 Uncharacterized protei 21.5 32 0.00082 14.5 0.4 34 125-160 49-82 (130)
197 TIGR01223 Pmev_kin_anim phosph 21.0 37 0.00094 14.1 0.7 85 121-238 33-117 (188)
198 TIGR01979 sufS cysteine desulf 20.6 30 0.00077 14.7 0.1 164 127-329 131-316 (409)
199 pfam08467 Luteo_P1-P2 Luteovir 20.5 21 0.00054 15.7 -0.7 61 287-347 226-306 (361)
No 1
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=0 Score=919.71 Aligned_cols=417 Identities=29% Similarity=0.482 Sum_probs=352.2
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
|+++|+||+|||||+||+|++|||++||+|++||+||||||||++||||||++|+|.+|++++| |+++||++|+.|+.+
T Consensus 1 Ma~e~~mP~lGe~~~egeI~~W~v~~GD~V~~~d~l~evETDKa~~Evps~~~G~v~~i~v~~G-d~v~vG~~i~~i~~~ 79 (549)
T PRK11855 1 MAKEFKVPDIGEGVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKKIKVKVG-DTVSVGAPLAVIEAA 79 (549)
T ss_pred CCCEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCCCEEECCCCCEEEEEEEECCC-CEECCCCEEEEEECC
T ss_conf 9846867888898512899999957999878999289998177136843888979999961899-884699859999568
Q ss_pred CCCCCCCCCCCC------------C-----------CCCC----------------------------------------
Q ss_conf 542111112221------------0-----------0011----------------------------------------
Q gi|254780674|r 82 STEIPPSPPLSK------------E-----------NIVE---------------------------------------- 98 (423)
Q Consensus 82 ~~~~~~~~~~~~------------~-----------~~~~---------------------------------------- 98 (423)
+++....+.... . ...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~mP~lGe~m~eg~I~~W~~k~GD~V~~gd~l~eVETDKa 159 (549)
T PRK11855 80 GAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAGGGVEEVKVPDIGEGIVEVEVIEWLVKVGDTVEEDQSLITVETDKA 159 (549)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCEECCCCCEEEEEECCC
T ss_conf 77666666666666778888888877777777778885135468888874413776784078980136872578860553
Q ss_pred -----CCCC---------------------------------------------CCC----C-------CCCCCCCCCCC
Q ss_conf -----1112---------------------------------------------222----2-------33322222222
Q gi|254780674|r 99 -----VREE---------------------------------------------HSH----S-------SPVVVREKHSK 117 (423)
Q Consensus 99 -----~~~~---------------------------------------------~~~----~-------~~~~~~~~~~~ 117 (423)
++.. ... . .........+.
T Consensus 160 ~~Ev~sp~~G~l~ki~v~eGd~v~VG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (549)
T PRK11855 160 TMEIPSPVAGVVKEIKVKVGDKVSVGSLLFKIEVAGAAPAAAAAPAPAAAPAAAAAAAAPAPAPAPAAAAAAAAAAAGPG 239 (549)
T ss_pred CEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12674365875447650589804579878997257777666667777788877888787777778877766666666777
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCC
Q ss_conf 222234322101111000001101234433222100244432000100011122111244----4445554654345662
Q gi|254780674|r 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVD----ESIDANILNLFAKDSY 193 (423)
Q Consensus 118 ~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 193 (423)
.++++||+|||||+|+||||++|.|||++|||+|+||++|+................... .............+..
T Consensus 240 ~~v~ASP~aRklA~e~gIDLs~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (549)
T PRK11855 240 GKAHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMAAAAAAPAAAAAAAGGGGLGLLPWPKVDFSKFGET 319 (549)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76346999999999849998996778999926599999998531456666766556666655456677665443456861
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 46551112211011100012321000001222332046787775665554320146655432221011100110000000
Q gi|254780674|r 194 EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEAN 273 (423)
Q Consensus 194 ~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~N 273 (423)
+++||++|||+||+||++||+++||||++.++|+|+|++||+++|+.+. ..|.|+||++||+||+++||++||.||
T Consensus 320 ~~~pls~mRk~iA~~m~~S~~~iPh~t~~~evdvt~l~~lR~~lk~~~~----~~gvklT~~~fiiKAva~AL~~~P~~N 395 (549)
T PRK11855 320 ETEPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAE----KAGVKLTMLPFFMKAVAAALKEFPVFN 395 (549)
T ss_pred EEEECHHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 4765719999999999976420673899999984799999999888787----518854547999999999998587315
Q ss_pred CCCC--CCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 0112--34410125566541565146420203414554798999998766654310233461003772389851532142
Q gi|254780674|r 274 VSWT--TNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGI 351 (423)
Q Consensus 274 a~~~--~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~ 351 (423)
++|+ +++|++|+++||||||++++||+||||||||+|+|.+|++++++|++|||+|||+++||+|||||||||||||+
T Consensus 396 a~~~~~~~~i~~~~~vnigiAV~t~~GLivPvI~~a~~~sl~~ia~~~~~L~~~Ar~gkL~~~e~~GgTfTISNlG~~G~ 475 (549)
T PRK11855 396 ASLDEDGKELTYKKYFNIGFAVDTPNGLLVPVIKDVDKKSILEIAREIAELAKKARDGKLKPDDMQGGCFTISNIGGIGG 475 (549)
T ss_pred EEEECCCCEEEEEECCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCCC
T ss_conf 89936898899940332247886799614453266020999999999999999998299998993896499967874555
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 210131158871689844631235877893789548898985200114028899999999998719889719
Q gi|254780674|r 352 NSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 352 ~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
.+|||||||||+||||||+++++|++++++|.+|++|+||||||||+|||++||+||++|+++||||++|||
T Consensus 476 ~~ftpIInpPq~aIL~vG~i~~~pv~~~~~i~~r~~m~lsls~DHRviDGa~aa~Fl~~~k~~le~P~~lLl 547 (549)
T PRK11855 476 TVFTPIINAPEVAILGVGKSQMKPVWNGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLEDPRRMLL 547 (549)
T ss_pred CCEECCCCCCCEEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECHHHCCHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 424777558962899755126888998998889889899997413030739999999999998739998963
No 2
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=0 Score=905.82 Aligned_cols=404 Identities=30% Similarity=0.468 Sum_probs=356.3
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
|+++|+||+|||||+||+|++|||++||.|++||+||||||||++||||||++|+|.+|+++|| |+|+||++|+.|+++
T Consensus 1 M~~ei~mP~lGe~m~Eg~I~~Wlvk~GD~V~~gd~L~eVETDKa~~Ei~s~~~G~l~ki~~~eG-d~v~VG~~ia~I~~~ 79 (406)
T PRK05704 1 MSVEIKVPTLPESVTEATIATWHKKPGDAVARDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG-DTVTVGQVLGRIDEG 79 (406)
T ss_pred CCCEEECCCCCCCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCEEECCCCCEEEEEEEECCC-CEECCCCEEEEEECC
T ss_conf 9823667999998307999899818999978999089998386207974888989999830898-996689989998268
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 54211111222100011111222223332222222222223432210111100000110123443322210024443200
Q gi|254780674|r 82 STEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTK 161 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~ 161 (423)
++.....++...+.. ..+.........+..+..+||+||++|+|+||||++|.||||+|||+++||++|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~asP~aRklA~e~gIDL~~i~GtG~~GrItk~DV~~~~~~~ 152 (406)
T PRK05704 80 AAAGAEAAAKSAEAA-------AAPAAAAAAAAAAAANDALSPAARKLAAENGLDASAVKGTGKDGRVTKEDVLAALAAA 152 (406)
T ss_pred CCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 876667777777777-------8888777877788888888940245686739997787788988853689999887433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 01000111221112444445554654345662465511122110111000123210000012223320467877756655
Q gi|254780674|r 162 TNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTL 241 (423)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~ 241 (423)
............ .............+++||++|||+||+||++||+++||+|++.|+|+|+|+++|+++|+.+
T Consensus 153 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~ls~~rk~IA~~m~~S~~~~p~~t~~~evd~t~l~~~R~~lk~~~ 225 (406)
T PRK05704 153 KAAPAAAAAAAA-------AAAPAPALGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAF 225 (406)
T ss_pred CCCCCCCCCCCC-------CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 677766666666-------6666666678851561071899999999997236686687777998089999999977776
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 54320146655432221011100110000000011234410125566541565146420203414554798999998766
Q gi|254780674|r 242 QFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQ 321 (423)
Q Consensus 242 ~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~ 321 (423)
. +..+.|+||++||+||+++||++||.||++|+++++++++++||||||++++||+||||||||+|+|.+|++++++
T Consensus 226 ~---~~~g~klt~~~~iikA~a~AL~~~P~~Na~~d~~~i~~~~~vnIGiAV~t~~GLivPVIk~a~~~~l~~ia~e~~~ 302 (406)
T PRK05704 226 E---KKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTDRGLVVPVLRDADQLSFAEIEKKIAE 302 (406)
T ss_pred H---HHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 6---5338754346799999999984182123899678518905785589997699658674667131899999999999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEH
Q ss_conf 65431023346100377238985153214221013115887168984463123587789378954889898520011402
Q gi|254780674|r 322 LAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDG 401 (423)
Q Consensus 322 l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidG 401 (423)
|++|||+|+|+++||+||||||||+|+||+.+|||||||||+||||+|+++++|++.+|++.+|++|+||||||||+|||
T Consensus 303 l~~~Ar~g~L~~~dl~ggTfTiSNlG~~G~~~~tpIInppqvaILgvg~i~~~pv~~~~~i~~~~~m~lsls~DHRvidG 382 (406)
T PRK05704 303 LAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAINGQIVIRPMMYLALSYDHRIIDG 382 (406)
T ss_pred HHHHHHHCCCCHHHCCCCEEEEECCCCCCCCCEECCCCCCCEEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECHHCCC
T ss_conf 99999838999788389649997787666542446657985389975634367688899888977889879745203073
Q ss_pred HHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 8899999999998719889719
Q gi|254780674|r 402 AIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 402 a~aa~Fl~~~~~~le~P~~ll~ 423 (423)
++||+||++|+++||||++|||
T Consensus 383 a~aa~Fl~~lk~~le~P~~lll 404 (406)
T PRK05704 383 KEAVGFLVTIKELLEDPERLLL 404 (406)
T ss_pred HHHHHHHHHHHHHHHCHHHHHH
T ss_conf 9999999999998739998961
No 3
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=100.00 E-value=0 Score=901.12 Aligned_cols=419 Identities=51% Similarity=0.818 Sum_probs=355.3
Q ss_pred EEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 78678878872179999998168978527985999952653124536878689999924886040358559999707542
Q gi|254780674|r 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 5 ~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
.|.||.|+.||++|+|++|+|||||+|+.||+|+|||||||+||+|+.++|+|.||||++|...|+||.+||++..+.++
T Consensus 1 ~i~MPaLSPTM~~Gnla~W~KKeGDkv~~GDViaEIETDKAtm~~e~~~eGyLAKILv~eGTkdvpvn~pIAV~v~~~eD 80 (584)
T TIGR01349 1 KITMPALSPTMTEGNLAKWLKKEGDKVKPGDVIAEIETDKATMEFEAQEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (584)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCCH
T ss_conf 98888887154656210244113777168876988745842674576268578888652478576358616896068011
Q ss_pred CCCC-C---------------CCCCCCCCCC------------CCC----------------------------------
Q ss_conf 1111-1---------------2221000111------------112----------------------------------
Q gi|254780674|r 85 IPPS-P---------------PLSKENIVEV------------REE---------------------------------- 102 (423)
Q Consensus 85 ~~~~-~---------------~~~~~~~~~~------------~~~---------------------------------- 102 (423)
.... . +.+++..... .++
T Consensus 81 ~~~a~~~~~~~~~a~~TP~~~pAp~P~~~a~PPtPsa~~~~~~YP~H~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~ 160 (584)
T TIGR01349 81 VADAFKDYKLEDSASSTPVAEPAPKPKEKAPPPTPSAKKSTKSYPAHKVVLLPALSPSMETGTVARWEKKVGDKLKEGDL 160 (584)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
T ss_conf 88998088700104788877787787223765586445778888864323245657655667400001345762233752
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780674|r 103 -------------------------------------------------------------------------------- 102 (423)
Q Consensus 103 -------------------------------------------------------------------------------- 102 (423)
T Consensus 161 ~AE~ETDKAT~~F~~~~~GYLAKILVP~GT~~~~~~~P~CIIV~~~~D~~~FADY~~~E~~~~~~q~~~~~~~~~s~~~~ 240 (584)
T TIGR01349 161 LAEVETDKATIDFEVEDEGYLAKILVPEGTRDVQLNTPLCIIVKKKEDIDKFADYRVEEVSDLKSQTAPPSAPHYSKKSP 240 (584)
T ss_pred EEEEECCCEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55542252022214635761899872888756637886489972600123442776311024667788777787677756
Q ss_pred ------CCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC-------CCCCCCC
Q ss_conf ------2222333222222222-2223432210111100000110123443322210024443200-------0100011
Q gi|254780674|r 103 ------HSHSSPVVVREKHSKN-RPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTK-------TNVKDYS 168 (423)
Q Consensus 103 ------~~~~~~~~~~~~~~~~-~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~-------~~~~~~~ 168 (423)
...+.+.......+++ |++|||+|||||+|.||||++|.||||+|||+|.|||.|.... ......+
T Consensus 241 a~~~~~~~~~~~~~~~~~~~~~GriFAsPLAk~LA~ekgidL~~v~GsGP~GRI~K~Die~~~p~~aakPaG~~~~a~~~ 320 (584)
T TIGR01349 241 APAEQAPEPSSPAPLSDKESKDGRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPKSAAKPAGKPASANEA 320 (584)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 77654678887766655668888178276898888753972212224086784774311026875431666541333111
Q ss_pred CCCCCCCCCC---CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1221112444---4455546543456624655111221101110001232100000122233204678777566555432
Q gi|254780674|r 169 TIQSFGLVDE---SIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHR 245 (423)
Q Consensus 169 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~ 245 (423)
...+...... ............+.|+.+|+|+|||.||+||.+|+|+|||||++.+|++++|++||++||..+...+
T Consensus 321 ~~~a~tp~~~tssttA~~~~~~~~tg~Y~d~P~sniRk~IA~RL~eSKq~iPHyYvs~~~~~~~LL~LR~~LNa~~~~~~ 400 (584)
T TIGR01349 321 AAAAKTPAAKTSSTTAAKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSVECNVDKLLKLRKELNAMAEEDD 400 (584)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHHCCCCC
T ss_conf 20366775323322235677888886446678883268999999887568860799998861068999999984467888
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 014665543222101110011000000001123--441012556654156514642020341455479899999876665
Q gi|254780674|r 246 EEISNKISVNDIILKAFALAMIQVPEANVSWTT--NAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLA 323 (423)
Q Consensus 246 ~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~--~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~ 323 (423)
.....|||+++|++||+++||+++|+.|++|.+ +.|++|++|||+|||++|+||++|+|||||.|+|.+|+.++++|+
T Consensus 401 GkP~~KlSVND~iikA~a~Al~~vP~aN~~W~~~~~~Ir~y~~vDiSVAVatP~GliTPIVr~a~~Kgl~~IS~e~K~L~ 480 (584)
T TIGR01349 401 GKPRYKLSVNDFIIKASALALREVPEANSSWTDVDDVIRRYKNVDISVAVATPDGLITPIVRNADAKGLSEISNEVKDLA 480 (584)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECEEEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf 88505666000799999999872990253534777606861201488776568882545072157246789999999999
Q ss_pred HHHCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCEEEEEECCCEEEEEEECCE---EEEEEEEEEEEEEEECEE
Q ss_conf 43102334610037723898515321-42210131158871689844631235877893---789548898985200114
Q gi|254780674|r 324 QRAKQRKLKPEEYQGGTTSISNMGML-GINSFCAVINPPQSTILAIGAGEKKVVFQNEE---IKVATIMNATLSADHRSV 399 (423)
Q Consensus 324 ~~ar~~~l~~~d~~ggtftiSNlG~~-g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~---i~~~~~~~ltls~DHRvi 399 (423)
+|||+|||.|+|++|||||||||||| |+..|++||||||+|||+||+..+++|+.+++ +.+..+|.+|||||||||
T Consensus 481 ~rAr~~KL~P~EfqGGTftISNLGM~nGik~F~AIiNPPQA~ILAvG~~~~~~vv~n~~e~G~~~a~~m~vTLS~DHRVi 560 (584)
T TIGR01349 481 KRARENKLKPEEFQGGTFTISNLGMFNGIKDFTAIINPPQACILAVGASEDRAVVDNKEEKGFEVASIMSVTLSCDHRVI 560 (584)
T ss_pred HHHHHCCCCCEEECCCCEEEECCCCCCHHHCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCEEECCEEEEEECCCCCEE
T ss_conf 99864378832454887567123114311143021173256440221323332003778898135675668304266333
Q ss_pred EHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 028899999999998719889719
Q gi|254780674|r 400 DGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 400 dGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
|||.||+||+.||.|||||..|||
T Consensus 561 DGA~gA~fl~~fk~~~EnP~~mLL 584 (584)
T TIGR01349 561 DGAVGAEFLKEFKKYLENPLEMLL 584 (584)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 324789999998788632687709
No 4
>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated
Probab=100.00 E-value=0 Score=883.89 Aligned_cols=305 Identities=26% Similarity=0.432 Sum_probs=274.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 22222343221011110000011012344332221002444320001000111221112444445554654345662465
Q gi|254780674|r 117 KNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVI 196 (423)
Q Consensus 117 ~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 196 (423)
..++++||+|||||||+||||++|.|||++|||+|+||++|+........................+.......+..+++
T Consensus 324 ~~~v~AsP~VRkLAre~GVDLs~V~GTG~~GRItk~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~e~v 403 (630)
T PRK11854 324 DAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAIKRAEAAPAAAGGGGLGLLPWPKVDFSKFGEIEEV 403 (630)
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 87666787899999982998877767799993438899998753135666777677766677787665553345751365
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 51112211011100012321000001222332046787775665554320146655432221011100110000000011
Q gi|254780674|r 197 PHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSW 276 (423)
Q Consensus 197 p~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~ 276 (423)
||++|||.||+||++||+++||||+|.++|+|+|++||+++|..++ ++..|.|+||++||+||++.||++||.||++|
T Consensus 404 p~s~iRk~iA~~M~~S~~~iPhvt~~~evDvT~L~~~R~~~k~~~~--~~~~gvklT~l~fiiKAva~ALk~~P~~Nas~ 481 (630)
T PRK11854 404 ELSRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKAQNAEAE--KKKLGVKITPLVFIMKAVAAALEQMPRFNSSL 481 (630)
T ss_pred ECCHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHH--HHCCCCCCCHHHHHHHHHHHHHHHCHHHEEEE
T ss_conf 0648999999999876002874777747747999999999888877--51378631248999999999998481104899
Q ss_pred C--CCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 2--34410125566541565146420203414554798999998766654310233461003772389851532142210
Q gi|254780674|r 277 T--TNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSF 354 (423)
Q Consensus 277 ~--~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~ 354 (423)
+ +++|++|+++|||||||+++||+||||||||+|||.+|++++++|.+|||+|||+|+||+||||||||+|+||+++|
T Consensus 482 ~~dg~~i~~~~~vNIGIAV~t~~GLvVPVIk~ad~ksl~eia~ei~~L~~kAR~~kL~p~dm~GgTFTISNlG~~G~~~~ 561 (630)
T PRK11854 482 SEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHF 561 (630)
T ss_pred CCCCCEEEEECCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCCCCCCE
T ss_conf 07986999923532578887699649561567453999999999999999997399998993797189977865444321
Q ss_pred CCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 131158871689844631235877893789548898985200114028899999999998719889719
Q gi|254780674|r 355 CAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 355 ~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
||||||||+||||+|+++++|+|++++|.+|+||+||||||||+|||++|||||++|+++||||++|||
T Consensus 562 tPIIN~PevaILgvG~i~~~Pv~~~~~i~~r~~m~LslS~DHRvIDGa~aarFl~~lk~~Ledp~~lll 630 (630)
T PRK11854 562 TPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADGARFITIINNRLSDIRRLVL 630 (630)
T ss_pred ECCCCCCCEEEEECCCCEEEEEEECCEEEEEEEEEEEEECCCHHCCHHHHHHHHHHHHHHHHCHHHHHC
T ss_conf 786568853788645346887988996889889999997031131659999999999998649886659
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR006255 These sequences describe the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. Members include the mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus and are generally excluded from this group of sequences as are all examples of dihydrolipoamide acetyltransferase. ; GO: 0004149 dihydrolipoyllysine-residue succinyltransferase activity, 0006099 tricarboxylic acid cycle, 0045252 oxoglutarate dehydrogenase complex.
Probab=100.00 E-value=0 Score=875.20 Aligned_cols=410 Identities=29% Similarity=0.456 Sum_probs=349.6
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 47867887887217999999816897852798599995265312453687868999992488604035855999970754
Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.+|+.|.|.||++||||.+|+||+||.|++||.||||||||+.+||+||+||+|.+|+.+|| ++|.+|++|+.|.....
T Consensus 1 ~~ikvP~LaESvtegTva~W~KkvGD~V~~DE~iveiETDKV~lEV~Sp~dGvl~~~~~~eG-~TV~~g~~La~~~EG~~ 79 (435)
T TIGR01347 1 IEIKVPELAESVTEGTVAEWHKKVGDTVKRDELIVEIETDKVVLEVPSPADGVLQEILEKEG-DTVTSGQVLAVLEEGSG 79 (435)
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCEEEEEECCCEEEEEECCCCCHHHHHHCCCC-CEECCCEEEEEEECCCC
T ss_conf 96447887653553305541068887112277689752074467882885302174306898-88505507788823876
Q ss_pred CC-----CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC----------CCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 21-----11112221000111112222233322---222222----------2222343221011110000011012344
Q gi|254780674|r 84 EI-----PPSPPLSKENIVEVREEHSHSSPVVV---REKHSK----------NRPIASPLARRLAGEHGIDLSSLSGSGP 145 (423)
Q Consensus 84 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------~~~~aSP~aRklA~e~giDl~~V~GTG~ 145 (423)
.. ...+....+... ..+++....+... ...... +-..+||.+||+|+++|||+++|+|+|+
T Consensus 80 nasken~~~~~~~~~a~~~-~~k~~~~~~~~~~~~~~~~~~~~~eieyllkdnh~~~~P~ar~~a~e~~~~~~~~~~~~~ 158 (435)
T TIGR01347 80 NASKENSSAATAAAPAKSK-EAKEETAAASAAAVEEAPTAAANREIEYLLKDNHPPLSPAARRLAKENGIDLSAVPGTGK 158 (435)
T ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 3110246788645663346-788743246411133102110002456575527876774688774112788535467788
Q ss_pred CCCCCC-CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 332221-0024443200010001112211124444455546543456624655111221101110001232100000122
Q gi|254780674|r 146 HGRIVK-SDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSID 224 (423)
Q Consensus 146 ~GRItk-~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~e 224 (423)
.||+|| +|+.++...+. ..+...+... ...............++++|||||||+||+||.+|+++.+.+|+|+|
T Consensus 159 ~g~vtK~~D~~k~~~~~~-~~a~~~a~~~----~~~~~~~~~~~~~r~e~RvKMtRlRqriAeRL~EaqN~~AMLTTFNE 233 (435)
T TIGR01347 159 TGRVTKKEDIVKKEEAPA-ASAAAPAAAA----AAKAPANEKESGTRVEERVKMTRLRQRIAERLLEAQNSTAMLTTFNE 233 (435)
T ss_pred CCCCCCHHHHHHHHHCCC-CCCCCCCCHH----HHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCHHHCCCCCH
T ss_conf 876454110245873875-4676666034----43214415223796336247772679999988876314000122331
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCEECCCCCCCEEEEECCCCCC
Q ss_conf 233204678777566555432014-665543222101110011000000001123--44101255665415651464202
Q gi|254780674|r 225 CNIDNLLSLREQMNRTLQFHREEI-SNKISVNDIILKAFALAMIQVPEANVSWTT--NAMIRHKHIDISVAVSIPGGIVT 301 (423)
Q Consensus 225 vd~t~l~~~R~~l~~~~~~~~~~~-~~kit~~~~l~kA~a~AL~~~P~~Na~~~~--~~i~~~~~vnIgiAv~~~~GL~v 301 (423)
|||++++++|+++|+.|. +.. |.||+|+.||+|||+.||++||.+|+.+|+ ++|+||+|+||||||+||+||+|
T Consensus 234 VdM~~vmeLRK~yke~F~---K~HdGvKLGFMSFFvKA~~~ALK~~P~VNA~IDGtt~divy~~Y~DIsvAVsTd~GLVv 310 (435)
T TIGR01347 234 VDMSAVMELRKRYKEEFE---KKHDGVKLGFMSFFVKAVVEALKRFPEVNAEIDGTTDDIVYKDYYDISVAVSTDRGLVV 310 (435)
T ss_pred HHHHHHHHHHHHHHHHHH---HHCCCCEECCCCCHHHHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEEEECCCCCEE
T ss_conf 003689999986334676---53088224211007899999987244233121574332787545579999875998334
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEC-C
Q ss_conf 034145547989999987666543102334610037723898515321422101311588716898446312358778-9
Q gi|254780674|r 302 PIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQN-E 380 (423)
Q Consensus 302 PvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~-~ 380 (423)
|||||||.||+.||-++|.+|..|||+|||+-+||+||||||||-|.||..++||||||||+||||+++|+.||+..| |
T Consensus 311 PVvRnad~l~~AdIE~~I~~L~~KAR~gKL~ledm~GGtFTItNGGVFGSL~STPIiNpPQ~AILGMH~I~eRPvavn~G 390 (435)
T TIGR01347 311 PVVRNADALSFADIEKEIKELGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNEG 390 (435)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCEEECCEEECCC
T ss_conf 22725665786777799898888753067314232788479976715302355775276510110378413357786387
Q ss_pred EEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 3789548898985200114028899999999998719889719
Q gi|254780674|r 381 EIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 381 ~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
+|++||||+|-||||||+|||.+|..||.++|++||||.+|||
T Consensus 391 ~ieirPMMYlALSYDHRliDGkEAV~FLv~iKe~lEDP~~LLL 433 (435)
T TIGR01347 391 QIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPERLLL 433 (435)
T ss_pred EEEECCCCHHHHCCCCEEEECCHHHHHHHHHHHHHCCHHHHHC
T ss_conf 2487972022323110023041231789999986138257621
No 6
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded. dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex.
Probab=100.00 E-value=0 Score=851.03 Aligned_cols=420 Identities=25% Similarity=0.434 Sum_probs=358.2
Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
..+|++||+|+...++++++.||++||+|++||+|.++|||||+|||||+.+|++.++-++.| |.|++|+.|..+..++
T Consensus 206 ~~~v~vPDiGdn~~~~~V~evlV~vGDtV~~~QslItLE~DKA~~EvPa~asGvv~~v~v~vG-D~v~~G~~il~L~~~~ 284 (655)
T TIGR01348 206 VQEVKVPDIGDNIEKVEVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVG-DSVSTGDLILVLSVAG 284 (655)
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCCEECCCCCEEEEECCEEEEEECCCCCCEEEEEEEEEC-CEECCCCEEEEEEECC
T ss_conf 415442653777775027999954377764788678870671478746898523789998656-6705788899971056
Q ss_pred CCCCCCCCCCCCCCC-C--CCCCC--------CCCCCCCCC--CCCCCCC------CCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 421111122210001-1--11122--------222333222--2222222------223432210111100000110123
Q gi|254780674|r 83 TEIPPSPPLSKENIV-E--VREEH--------SHSSPVVVR--EKHSKNR------PIASPLARRLAGEHGIDLSSLSGS 143 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~-~--~~~~~--------~~~~~~~~~--~~~~~~~------~~aSP~aRklA~e~giDl~~V~GT 143 (423)
..-...+.+.+...+ + ..++. +.+.+..+. ......+ ++|+|++|+||||.||||+.|+||
T Consensus 285 stp~t~~~p~~a~p~~~spa~~~~~aAa~pA~~~A~~~~p~~~~t~~~~~~~GrPvv~A~P~vR~LARe~Gvdl~~vkGt 364 (655)
T TIGR01348 285 STPATAEAPASAEPAAQSPAAEQKEAAAAPAAAKAEAPAPVDAGTQNPAKVDGRPVVHAAPAVRRLAREFGVDLSKVKGT 364 (655)
T ss_pred CCCCCHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCEEEEEECC
T ss_conf 77664135634587453503416676777765888877876766568762387230017628899988827011110136
Q ss_pred CCCCCCCCCHHHHHHHHCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCH
Q ss_conf 4433222100244432000------1000111221112444445554654345662465511122110111000123210
Q gi|254780674|r 144 GPHGRIVKSDIETLISTKT------NVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIP 217 (423)
Q Consensus 144 G~~GRItk~DV~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iP 217 (423)
|++|||++|||.+|+.... ......++.+.+.......-+..++.+++..+.++||||||..+.+|.++|.+||
T Consensus 365 g~~GRI~~EDVq~~v~~~~GtGiPe~rA~aa~a~a~gG~~~~~P~P~VdFsKFGeve~~~lsri~k~~~anL~r~W~~iP 444 (655)
T TIGR01348 365 GKKGRILREDVQKFVKEAVGTGIPEKRAKAAAASAAGGIPGLLPWPEVDFSKFGEVEEVDLSRIRKISGANLTRNWVMIP 444 (655)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCHHHCCCCCC
T ss_conf 88886253579998064336787532255331102031004687785474325447751366401100011212553478
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC--CCCCEECCCCCCCEEEE
Q ss_conf 00001222332046787775665-5543201466554322210111001100000000112--34410125566541565
Q gi|254780674|r 218 HFYVSIDCNIDNLLSLREQMNRT-LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWT--TNAMIRHKHIDISVAVS 294 (423)
Q Consensus 218 h~~~~~evd~t~l~~~R~~l~~~-~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~--~~~i~~~~~vnIgiAv~ 294 (423)
|+|+|+..|+|+|++||+++|+. ...++...|.|||+++|||||||.||++||.|||+++ ++.++|++|||||+|||
T Consensus 445 hVT~FDkaDiT~lEa~R~~~~~EnAa~~KnG~G~KLT~~~~L~Ka~A~aL~~~P~FNaSL~~~g~~l~~KkYv~IG~AvD 524 (655)
T TIGR01348 445 HVTHFDKADITELEAFRKQQNKENAAVEKNGEGVKLTVLAILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVD 524 (655)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEEEE
T ss_conf 21026811168999999871510001311789810358899999999999753531466230326355534688667855
Q ss_pred ECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEE
Q ss_conf 14642020341455479899999876665431023346100377238985153214221013115887168984463123
Q gi|254780674|r 295 IPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKK 374 (423)
Q Consensus 295 ~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~ 374 (423)
||+||+||||||+|+|+|.||+.++.+|.+|||++||+|+||+||||||||||++|++.||||||-|+||||||.+.-.+
T Consensus 525 TP~GLlVPV~kdvdrKGi~eL~~e~~~LA~kAR~~KL~p~~MqGacFtISsLGGiGGt~FtPIvNaPEVAILGVSks~~~ 604 (655)
T TIGR01348 525 TPNGLLVPVIKDVDRKGIVELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSAME 604 (655)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCHHHCC
T ss_conf 79984753286468413899999999999986126868302378405110223455454667305741342320144153
Q ss_pred EEEECC--EEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 587789--3789548898985200114028899999999998719889719
Q gi|254780674|r 375 VVFQNE--EIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 375 ~~~~~~--~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
|||++. +|.+|.|++||||||||+||||+||||+++|.+.|+|+++|||
T Consensus 605 PvW~g~kG~F~Pr~mLPLSLsYDHRvIdGA~AArF~~~l~~~L~D~r~~~L 655 (655)
T TIGR01348 605 PVWDGKKGEFEPRLMLPLSLSYDHRVIDGADAARFTTYLSELLADIRRLLL 655 (655)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 431687675576000530000010022354688999998755544886709
No 7
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=100.00 E-value=0 Score=828.46 Aligned_cols=412 Identities=27% Similarity=0.402 Sum_probs=339.8
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
..++|.||.||||+|||||++|||.+||+|+.||||+||.|||++.|||||++|+|.+|+++| ||+|.||.+|+.|...
T Consensus 134 ~aT~v~MPeLGESVTEGTvt~WLKaVGD~vEvDEPllEVsTDKVDTEiPSPvaGtlleI~a~E-DdtVeVG~vlA~IGDa 212 (607)
T TIGR02927 134 EATEVEMPELGESVTEGTVTRWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEILAEE-DDTVEVGAVLAKIGDA 212 (607)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCCCEEEEEEECC-CCEEECCCEEEEECCC
T ss_conf 656331644676202313787886339877633763564257206666887143688898177-8864315066542376
Q ss_pred CCC----CC-----CCC--------------CC-CCCCCCCCCCCC-------CCCCCCC--------CCCCCCCCCCCC
Q ss_conf 542----11-----111--------------22-210001111122-------2223332--------222222222223
Q gi|254780674|r 82 STE----IP-----PSP--------------PL-SKENIVEVREEH-------SHSSPVV--------VREKHSKNRPIA 122 (423)
Q Consensus 82 ~~~----~~-----~~~--------------~~-~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~a 122 (423)
... .+ +.+ .. .++...+.+++. +.+.+.+ .+-....+..|.
T Consensus 213 n~A~A~~~P~~E~~P~PkaeP~~ea~~ep~P~~k~~p~a~p~p~p~P~p~ae~papaa~aA~~~~~~aaPvssGd~~pYV 292 (607)
T TIGR02927 213 NDAGAEDEPKEEEKPEPKAEPKSEAKSEPAPEAKAKPKAKPKPEPKPKPKAEEPAPAAKAATEKTAAAAPVSSGDSSPYV 292 (607)
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55650106787787777677678755677788887887887767886326646788876554564324751246888610
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CC--CCCCCCCCCCCEE
Q ss_conf 4322101111000001101234433222100244432000100011122111244444-----55--5465434566246
Q gi|254780674|r 123 SPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI-----DA--NILNLFAKDSYEV 195 (423)
Q Consensus 123 SP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~ 195 (423)
+|+|||||+++||||+.|+|||-+|||+|+||+++.......+..+..+......... .+ ........-+.+.
T Consensus 293 TPlVRKLA~~~GvDLssVkGTGvGGRIRKQDVlAAA~~a~ea~~A~Aa~aaaAapaapAaAa~~~sakp~p~~a~LRGtT 372 (607)
T TIGR02927 293 TPLVRKLAKEKGVDLSSVKGTGVGGRIRKQDVLAAAKAAEEAKEAAAAEAAAAAPAAPAAAAKKASAKPEPEKAKLRGTT 372 (607)
T ss_pred HHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCH
T ss_conf 03468777626831034111134552005669998675346773002575020031077750110367762210257740
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 55111221101110001232100000122233204678777566555432014665543222101110011000000001
Q gi|254780674|r 196 IPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVS 275 (423)
Q Consensus 196 vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~ 275 (423)
.+++|||+.+|++|.+|+|..+|+|+.+|||||++.+||++-|..|+ ++.|.+|||+|||+||+.-||+-||.+|++
T Consensus 373 ~K~nRiRqi~A~k~~esLQ~sAQLT~~~EVD~TrvaaLRaraK~~F~---ek~Gv~LTfLPFfv~Av~eALkaHP~vNAS 449 (607)
T TIGR02927 373 QKVNRIRQITAKKTVESLQISAQLTQVHEVDMTRVAALRARAKAEFL---EKEGVNLTFLPFFVKAVVEALKAHPNVNAS 449 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCHHHH---HHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 45678899998888998864342060168502348888640155778---716873001578999999998618862133
Q ss_pred C--CCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 1--23441012556654156514642020341455479899999876665431023346100377238985153214221
Q gi|254780674|r 276 W--TTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINS 353 (423)
Q Consensus 276 ~--~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~ 353 (423)
| ++.+++||+..|+||||||+.||++||||||..|||-+|++.|+||..|+|+|+|.|+||+||||||||+|+-|..|
T Consensus 450 yN~etKe~TYhd~eh~giAVDTp~GLL~PVi~NAgDLslpglAkaI~DlAaRaR~nklkPdeLsGgTFTITNiGS~GALf 529 (607)
T TIGR02927 450 YNEETKEVTYHDAEHLGIAVDTPRGLLVPVIHNAGDLSLPGLAKAIADLAARARDNKLKPDELSGGTFTITNIGSEGALF 529 (607)
T ss_pred CCCCCCEEEEEEEEEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 04687503134310201465478886346231256577367999998899875347878540258732564006774011
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEEEC-----CEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCC
Q ss_conf 01311588716898446312358778-----93789548898985200114028899999999998719
Q gi|254780674|r 354 FCAVINPPQSTILAIGAGEKKVVFQN-----EEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIEN 417 (423)
Q Consensus 354 ~~pii~~pq~aILgvG~~~~~~~~~~-----~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~ 417 (423)
-||||+|||++|||.|+|++||++.. +.|.||+||+|.||||||+||||+|+|||.++|++||.
T Consensus 530 DTPIl~pP~aaiLG~GAIvkrPrVI~DedG~esIaiRsvcyLpLtYDHrlvDGADAgRfl~TiK~RLEe 598 (607)
T TIGR02927 530 DTPILVPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYLPLTYDHRLVDGADAGRFLTTIKKRLEE 598 (607)
T ss_pred CCCCCCCCCHHHHCCCCEEECCEEEEECCCCCEEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHHC
T ss_conf 577236754232126543107767885789815765112220454464034000045689898776514
No 8
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=0 Score=797.30 Aligned_cols=373 Identities=28% Similarity=0.445 Sum_probs=308.7
Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
+++|+||+|||||+||+|++|+|++||.|++||+||||||||++||||||++|+|.+|++++| |+|+||++|+.|+.++
T Consensus 57 i~~ikMP~LGetm~EG~Iv~WlvkeGD~V~~gd~L~EVETDKA~~EVeSp~~G~l~kIlv~eG-d~V~VG~~la~I~~~~ 135 (430)
T PTZ00144 57 IKTIKVPRLGDSISEGTLSEWKKKVGDYVKVDETIAIVETDKVSVDINSKFSGVLSKIFAEVG-DTVLVGKPLCEIDTSG 135 (430)
T ss_pred CEEEECCCCCCCCEEEEEEEEECCCCCEECCCCCEEEEECCCCCEEECCCCCEEEEEEEECCC-CEEECCCEEEEEECCC
T ss_conf 649879889998206999799818999868999089998588417965778979999863799-9894698699996687
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 42111112221000111112222233322222222222234322101111000001101234433222100244432000
Q gi|254780674|r 83 TEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKT 162 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~ 162 (423)
+.....+....+... +.+.... .......|.++..+....-......+++..+++....
T Consensus 136 e~~~~~~~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 194 (430)
T PTZ00144 136 EPPAKIPEKKEEVKP--------PKETPSK----PESKSPEPPKKVDAKPVSSVSVKEPPTPVETRVLYQL--------- 194 (430)
T ss_pred CCCCCCCCCCCCCCC--------CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf 876666555666788--------8888888----7777778765444564443233568877666677665---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10001112211124444455546543456624655111221101110001232100000122233204678777566555
Q gi|254780674|r 163 NVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQ 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~ 242 (423)
............+|+++|||.||+||++||+++||+|++.|+|+++|+++|+++|+.
T Consensus 195 ---------------------~~~~~~~~~~~~i~ls~~Rk~IA~rm~~S~~~iph~t~~~evDvt~l~~lR~~lk~~-- 251 (430)
T PTZ00144 195 ---------------------EKESSDLETETRVRMTRMRKRIAERLKESQNTCVMLTTFNECDMSKLMKLRKELNES-- 251 (430)
T ss_pred ---------------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHH--
T ss_conf ---------------------544467786531558368999999999845669649996476568999999998763--
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 43201466554322210111001100000000112344101255665415651464202034145547989999987666
Q gi|254780674|r 243 FHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQL 322 (423)
Q Consensus 243 ~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l 322 (423)
.+.+.|+||++||+||+++||++||.+|++|++++++++++||||||||+++||+||||||||++||.+|++++++|
T Consensus 252 ---~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~d~d~i~~~~~vnIGiAVat~~GLiVPVIr~ad~ksl~~Ia~ei~~L 328 (430)
T PTZ00144 252 ---GKYSCKLGFVSAFMRASTLALLKMPIMNSYIEGDEIVTKNYVDISVAVATPTGLTVPVIRNCENKNWEELELALSEL 328 (430)
T ss_pred ---HCCCCCCCHHHHHHHHHHHHHHHCCHHHEEEECCCEEEECCCCEEEEEECCCCEEECCCCCHHHCCHHHHHHHHHHH
T ss_conf ---00476664367889999999985833102550662157304635799976995382550572039999999999999
Q ss_pred HHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHH
Q ss_conf 54310233461003772389851532142210131158871689844631235877893789548898985200114028
Q gi|254780674|r 323 AQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGA 402 (423)
Q Consensus 323 ~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa 402 (423)
++|||+|+|+++||+||||||||+||||+.+|||||||||+||||+|+++++|++.+|++++|++|+||||||||+|||+
T Consensus 329 ~~kAr~gkL~~~dl~GgTfTISNlG~~G~~~~tpIInpPqvaILgvG~i~~~pv~~~~~i~~r~~m~lsLs~DHRviDGa 408 (430)
T PTZ00144 329 ATKAREGKLTIDDMTGGTFTISNGGVYGSMLSTPIINPPQSSILGMHTIKKRPVVRDDEIVIRPIMNLALTYDHRLIDGR 408 (430)
T ss_pred HHHHHHCCCCHHHHCCCEEEEECCCCCCCCEEECCCCCCCEEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECCCCCHH
T ss_conf 99998389997991895099977875665405662268851899846446787998996899878898897233030639
Q ss_pred HHHHHHHHHHHHHCCHHHHHC
Q ss_conf 899999999998719889719
Q gi|254780674|r 403 IASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 403 ~aa~Fl~~~~~~le~P~~ll~ 423 (423)
+|||||++|+++||||++|||
T Consensus 409 ~aArFl~~lk~~LE~P~~LLl 429 (430)
T PTZ00144 409 DAVQFLNAIKDYIENPSLLLI 429 (430)
T ss_pred HHHHHHHHHHHHHCCHHHHHC
T ss_conf 999999999998719887754
No 9
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=0 Score=784.63 Aligned_cols=401 Identities=39% Similarity=0.633 Sum_probs=349.9
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
|+++|+||+|||||+||+|++||||+||+|++||+|+||||||++||||||++|+|.+|++++| ++|+||++|+.|..+
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G-~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEG-DTVPVGAVIARIEEE 79 (404)
T ss_pred CCCEEECCCCCCCCEEEEEEEEEECCCCEECCCCCEEEEEECCEEEEECCCCCCEEEEEECCCC-CEECCCCEEEEEECC
T ss_conf 9736746898885136788589726998636998069998065335514777859967620589-887589858999337
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 54211111222100011111222223332222222222223432210111100000110123443322210024443200
Q gi|254780674|r 82 STEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTK 161 (423)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~ 161 (423)
++..+.......+....... . ...........+..+||++|++|+|+|+||+++.|||++|||++.|++.+....
T Consensus 80 ~~~~~a~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~ 154 (404)
T COG0508 80 GADAPAAAEAPPEPAAAAPA----S-APATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK 154 (404)
T ss_pred CCCCCCCCCCCCCCCCCCCC----C-CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEECCCHHHHHCCC
T ss_conf 77655567766786666766----6-667765555544345803455677609678773677878835033302220343
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 01000111221112444445554654345662465511122110111000123210000012223320467877756655
Q gi|254780674|r 162 TNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTL 241 (423)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~ 241 (423)
.......... .... ......++.+||+++||.|+++|.+||+++||+|.+.++|++.|+++|++++..+
T Consensus 155 ~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~ 223 (404)
T COG0508 155 AAAAAAPAPA----------AAAP-ASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEF 223 (404)
T ss_pred CCCCCCCCCC----------CCCC-CCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 3345555655----------5666-5567773054214415889988763030298254432135767899999865430
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--CCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 54320146655432221011100110000000011234--4101255665415651464202034145547989999987
Q gi|254780674|r 242 QFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTN--AMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEV 319 (423)
Q Consensus 242 ~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~--~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~ 319 (423)
. .+ +.|+||++||+||++.||++||.+|++|+++ .+++++++|||+||++++||+||||||||++++.+|++++
T Consensus 224 ~---~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i 299 (404)
T COG0508 224 E---KK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEI 299 (404)
T ss_pred C---CC-CCCCCEEEEEHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 0---24-6521112232888999985187035675266540476224418999835997175662435545578898888
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEE
Q ss_conf 66654310233461003772389851532142210131158871689844631235877893789548898985200114
Q gi|254780674|r 320 KQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSV 399 (423)
Q Consensus 320 ~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvi 399 (423)
++|..|||+|+|+++||+||||||||+|+||+.+|+|||||||+||||+|++.++|+|.+++|.+|+||+||||||||+|
T Consensus 300 ~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRvi 379 (404)
T COG0508 300 KDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVI 379 (404)
T ss_pred HHHHHHHHHCCCCHHHHCCCEEEEECCCCCCCEEECCEECCCCEEEEECCCCCCCCEEECCEEEECEEEEEEECCCCCCC
T ss_conf 89999986445688882786477534663311231120158632798513144355575361300115887640266332
Q ss_pred EHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 028899999999998719889719
Q gi|254780674|r 400 DGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 400 dGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
||++|++||+++|++||||..||+
T Consensus 380 DGa~a~~Fl~~ik~~le~p~~ll~ 403 (404)
T COG0508 380 DGAEAARFLVALKELLEDPERLLL 403 (404)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 738788999999987229165433
No 10
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=0 Score=744.45 Aligned_cols=323 Identities=43% Similarity=0.727 Sum_probs=312.7
Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
+++|+||+|||+|+||+|++|+|++||.|++||+||||||||+++|||||++|+|.+|++++| |+++||++|+.|
T Consensus 1 i~~i~mP~lge~m~eg~i~~W~~~~Gd~V~~g~~l~eVeTDKa~~ei~a~~~G~l~~i~~~~G-~~v~VG~~ia~i---- 75 (324)
T PRK11856 1 IHEIKMPDLGEGMTEGEIVEWLVKEGDTVKKGDPLAEVETDKATVEVESPVAGTLRKILVEEG-DVVPVGAPIAVI---- 75 (324)
T ss_pred CEEEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCC-CEECCCCEEEEE----
T ss_conf 928878999999517999999908999978999499998076668980688839989960897-995799989994----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 42111112221000111112222233322222222222234322101111000001101234433222100244432000
Q gi|254780674|r 83 TEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKT 162 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~ 162 (423)
..+||++|++|+|+||||++|.||||+||
T Consensus 76 -------------------------------------~~asP~ar~lA~e~gidl~~i~gtG~~gr-------------- 104 (324)
T PRK11856 76 -------------------------------------VRASPLARKLARELGVDLATVRGTGPGGR-------------- 104 (324)
T ss_pred -------------------------------------CCCCCHHHHHHHHCCCCHHHCCCCCCCCC--------------
T ss_conf -------------------------------------46782445568772999766778999986--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10001112211124444455546543456624655111221101110001232100000122233204678777566555
Q gi|254780674|r 163 NVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQ 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~ 242 (423)
+|||.||++|.+||+++||+|++.++|+++|+.+|+++|+.
T Consensus 105 -------------------------------------~~r~~ia~~m~~s~~~ip~~~~~~~vd~~~l~~~r~~~~~~-- 145 (324)
T PRK11856 105 -------------------------------------GLRKAIAKRMVNSKFNIPHFTLTDEVDATDLLALRKSLKKA-- 145 (324)
T ss_pred -------------------------------------CHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHHH--
T ss_conf -------------------------------------25899999988773039829999987579999999997654--
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 43201466554322210111001100000000112-34410125566541565146420203414554798999998766
Q gi|254780674|r 243 FHREEISNKISVNDIILKAFALAMIQVPEANVSWT-TNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQ 321 (423)
Q Consensus 243 ~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~ 321 (423)
...+.|+|+++||+||+++||++||.+|++|+ ++++.+++++|||+||++++||+||||||++++++.+|++++++
T Consensus 146 ---~~~~~klt~~~~~ikA~~~AL~~~P~~Ns~~~~~~~i~~~~~vnIGiAV~~~~GLvvPvir~a~~~sl~~ia~~~~~ 222 (324)
T PRK11856 146 ---AVEGGKLTVLAFLVKAVADALKEFPLLNASFDDEGEIVLHKSVNLGIAVATDDGLVVPVIRNADKKSLAELAAEIKD 222 (324)
T ss_pred ---HHCCCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf ---30488768679999999999742837506997899499935765689998278637005887000899999998999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEH
Q ss_conf 65431023346100377238985153214221013115887168984463123587789378954889898520011402
Q gi|254780674|r 322 LAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDG 401 (423)
Q Consensus 322 l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidG 401 (423)
|+.|||+|+|+++||+||||||||+|+||+++|+|||||||+||||+|+++++|++.++++.++++|++|||||||+|||
T Consensus 223 l~~~Ar~~~L~~~dl~ggtftISNlG~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~~~i~~~~~~~ltls~DHRvidG 302 (324)
T PRK11856 223 LARKAREGKLKPEELSGGTFTISNLGMFGGDYFTPIINPPEVAILGVGRIEDRPVVKDGEIVVRKVMPLSLSFDHRVVDG 302 (324)
T ss_pred HHHHHHHCCCCHHHHCCCCEEEECCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECCCCCC
T ss_conf 99999828999899479708997677755434663546885599985744588899899788965899999855401270
Q ss_pred HHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 8899999999998719889719
Q gi|254780674|r 402 AIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 402 a~aa~Fl~~~~~~le~P~~ll~ 423 (423)
++|++||++|+++||||++|||
T Consensus 303 a~aa~Fl~~l~~~le~P~~lll 324 (324)
T PRK11856 303 ADAARFLKALKELLENPALLLL 324 (324)
T ss_pred HHHHHHHHHHHHHHCCHHHHHC
T ss_conf 9999999999998619887659
No 11
>KOG0557 consensus
Probab=100.00 E-value=0 Score=717.26 Aligned_cols=410 Identities=46% Similarity=0.739 Sum_probs=347.4
Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
...|.||.|+.||+||.|++|+|||||++++||.|||||||||+||||++++|+|.||+++||...|+||++|++|.+++
T Consensus 38 h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557 38 HKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred CEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCC
T ss_conf 43861577886335784266752257756888658999604512334403677654554135765566887159995263
Q ss_pred CCCCCCCCCCCC----------------CCCCCCCCC-CCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 421111122210----------------001111122-22233322222--22222223432210111100000110123
Q gi|254780674|r 83 TEIPPSPPLSKE----------------NIVEVREEH-SHSSPVVVREK--HSKNRPIASPLARRLAGEHGIDLSSLSGS 143 (423)
Q Consensus 83 ~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~~~~~~~--~~~~~~~aSP~aRklA~e~giDl~~V~GT 143 (423)
++.........+ ......+.+ ..+.+....+. ...++.++||++|++|.|+|+|+++|.||
T Consensus 118 ~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i~gt 197 (470)
T KOG0557 118 DDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSIPGT 197 (470)
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCCCCCCCC
T ss_conf 33777626652113566775557899997444567999876443235677677882642868999999818862028676
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 44332221002444320001000111221112444445554654345662465511122110111000123210000012
Q gi|254780674|r 144 GPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSI 223 (423)
Q Consensus 144 G~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~ 223 (423)
||+|||++.||+.|+.............. .............+.++.+|.++||+.|++||.+|+++|||+|+..
T Consensus 198 GP~Gri~k~Di~~~v~~~~~k~~~~~~~~-----~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~ 272 (470)
T KOG0557 198 GPHGRILKGDIEKHVGSGKKKSAKAPKAS-----APPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTV 272 (470)
T ss_pred CCCCEEEHHHHHHHHCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 87750115568876402443446677766-----7886766776788863216630046565301445405797277730
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC-CCCEECCCCCCCEEEEECCCCCCE
Q ss_conf 2233204678777566555432014665543222101110011000000001123-441012556654156514642020
Q gi|254780674|r 224 DCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTT-NAMIRHKHIDISVAVSIPGGIVTP 302 (423)
Q Consensus 224 evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~-~~i~~~~~vnIgiAv~~~~GL~vP 302 (423)
.++++.|+.+|+++| + ...+.++|+++|++||.+.||+++|..|++|.+ +.|.+++.|||.+||++++||++|
T Consensus 273 ~~~~d~ll~~r~~ln--~----~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitP 346 (470)
T KOG0557 273 DVNLDKLLALREKLN--F----EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITP 346 (470)
T ss_pred EEEHHHHHHHHHHHH--H----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHEEECCCCCCCH
T ss_conf 555688899999852--3----0467511034999999999872699553111377651045767713224135763103
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEE---EC
Q ss_conf 341455479899999876665431023346100377238985153214221013115887168984463123587---78
Q gi|254780674|r 303 IIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVF---QN 379 (423)
Q Consensus 303 vIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~---~~ 379 (423)
+|+|+|.+.+.+|+++|++|+.|||.|+|.|++++|||||||||||||+..|++||||||.|||+||+.....|. .+
T Consensus 347 ii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~ 426 (470)
T KOG0557 347 IIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGP 426 (470)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 23303433377777898887777764367850005873567663676743212136985666532026764120377765
Q ss_pred CEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 93789548898985200114028899999999998719889719
Q gi|254780674|r 380 EEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 380 ~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
+++.....|++|||||||+|||+.|+|||+.|+.++|||..||+
T Consensus 427 ~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557 427 EKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred CCCCEEEEEEEEEECCCCEECHHHHHHHHHHHHHHHHCHHHHHC
T ss_conf 65350002578985376301088999999999987408786519
No 12
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=0 Score=673.17 Aligned_cols=304 Identities=30% Similarity=0.433 Sum_probs=268.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC----------CCCCCCCCC
Q ss_conf 2222234322101111000001101234433222100244432000100011122111244----------444555465
Q gi|254780674|r 117 KNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVD----------ESIDANILN 186 (423)
Q Consensus 117 ~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 186 (423)
.++++|||+||++|+|+||||++|.||||+|||+++||++|+.+................. .........
T Consensus 1 ~~ri~ASP~aRklA~e~gIDl~~V~GTGp~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (316)
T PRK11857 1 DDKILATPAARALAKDLGIDLYDVKGSGANGKIHKEDVENYIKTNVVAISPLEKRIAENIENDSIKSPAQQAKAESVPAN 80 (316)
T ss_pred CCCEEECHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99883069999999983999877507798982989999999852245667554445556665556665444545567655
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 43456624655111221101110001232100000122233204678777566555432014665543222101110011
Q gi|254780674|r 187 LFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAM 266 (423)
Q Consensus 187 ~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL 266 (423)
.......+++|+++|||+||++|++||+++||||++.|+|+|+|+++|+++++.+. +..+.|+||++||+||+++||
T Consensus 81 ~~~~~~~~~~p~~~~Rk~iA~~M~~S~~~iPh~t~~~evd~t~L~~~R~~~~~~~~---~~~~~klT~~~~iiKA~a~AL 157 (316)
T PRK11857 81 ITPKLEAKREKVTPIRKAIARAMTNSWLNVAYVNLVYEIDMTELWALRKSVLDPIL---KATGVKLTFLPFISKAIVIAL 157 (316)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHH
T ss_conf 56677614421728999999999986410881589999728999999999888876---513886565899999999999
Q ss_pred HHCCCCCCCCC--CCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf 00000000112--3441012556654156514642020341455479899999876665431023346100377238985
Q gi|254780674|r 267 IQVPEANVSWT--TNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSIS 344 (423)
Q Consensus 267 ~~~P~~Na~~~--~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiS 344 (423)
++||.||++|+ +++++++++|||||||++++||+||||||||+|+|.+|++++++|++|||+|+|+++||+|||||||
T Consensus 158 ~~~P~lNa~~~~~~~~i~~~~~vnIgiAV~t~~GLivPVi~~a~~~~l~~ia~e~~~L~~~ar~~~L~~~d~~ggTfTIS 237 (316)
T PRK11857 158 KKFPYINAKYDEATSEIIYPDTVNLGMAVDTDAGLMVPVIKNAQKLSLVELAKEIKRLAGAARDKKIKPSEMQGSTFTIT 237 (316)
T ss_pred HHCCHHHCEEECCCCEEEEECCCCEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEE
T ss_conf 85858443580689779994152079999779975966350656278999999999999999839999788279539987
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 1532142210131158871689844631235877893789548898985200114028899999999998719889719
Q gi|254780674|r 345 NMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 345 NlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
|+||||+.+|+|||||||+||||||+++++|++.+|++.++++|++|||||||+|||++||+||++|+++||||++||+
T Consensus 238 NlG~~G~~~~tpIIn~Pq~aILgvG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~P~~l~~ 316 (316)
T PRK11857 238 NYGSVGSLYGVPVINYPELAIAGVGAIIDKAVVKNGEIVAGKIMSLTVAADHRWIDGATIGKFAKRVKELLEKPEILGV 316 (316)
T ss_pred CCCCCCCEEEECCCCCCCEEEEECCCCEEEEEEECCCEEEEEEEEEEEEEECHHHCCHHHHHHHHHHHHHHCCHHHHCC
T ss_conf 6877322246676369972788756344676887894789647999997463030709999999999999559887439
No 13
>KOG0558 consensus
Probab=100.00 E-value=0 Score=652.21 Aligned_cols=405 Identities=27% Similarity=0.466 Sum_probs=344.6
Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
...|++-++|||+.|+++-+|+|||||+|+..|+||||++|||+++|.|.++|++++|+...+ |.+.||+++..++.+.
T Consensus 64 vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~d-dia~VGk~Lvd~eve~ 142 (474)
T KOG0558 64 VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD-DIAKVGKPLVDLEVED 142 (474)
T ss_pred EEEEEHHHCCCCCEEEEEEEEHHHCCCCHHHHCCHHHCCCCCCEEEEEEEECCEEEEEEECCH-HHHHHCCCEEEEEECC
T ss_conf 598771230464005540110030697388742223020465248998640656778740733-4667386115566115
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 42111112221000111112222233322222222222234322101111000001101234433222100244432000
Q gi|254780674|r 83 TEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKT 162 (423)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~ 162 (423)
.+..+... .+.+..+.+.......+.....++|++|+||+|+||||+.|.|||++|||+|+||++|+.+..
T Consensus 143 ~~ds~e~s---------~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~p 213 (474)
T KOG0558 143 SQDSPEDS---------DESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVP 213 (474)
T ss_pred CCCCCCCC---------CCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 76784557---------766433478773013332454467889999997097658610368787343788998744489
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 10001112211124444455546543456624655111221101110001232100000122233204678777566555
Q gi|254780674|r 163 NVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQ 242 (423)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~ 242 (423)
..-..+........... .........-.....+|+.+.+|++-+.|+++. .||||.+..|+|+|.|.++|+++|...
T Consensus 214 g~~~~~~~~~~a~~~~~-~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~a- 290 (474)
T KOG0558 214 GFVTDPSPSEHAVIPGP-SPSTKASSNLEADKTVPLRGFSRAMVKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKENA- 290 (474)
T ss_pred CCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHHH-
T ss_conf 87569997602217999-976555676643451212347899999988874-588544244247688999999986666-
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC--CCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 4320146655432221011100110000000011234--41012556654156514642020341455479899999876
Q gi|254780674|r 243 FHREEISNKISVNDIILKAFALAMIQVPEANVSWTTN--AMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVK 320 (423)
Q Consensus 243 ~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~--~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~ 320 (423)
.+.+.|+||+|||+||.+.||.+||.+|+++|.+ +++++..+|||+|+||++||+||.|||++.++++||+++++
T Consensus 291 ---~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLn 367 (474)
T KOG0558 291 ---KERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELN 367 (474)
T ss_pred ---HHCCCEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCHHHHHHHHHHHH
T ss_conf ---64573265237899988778760763321120555555443355225886278865436755411113999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEE-CCEEEEEEEEEEEEEEEECEE
Q ss_conf 6654310233461003772389851532142210131158871689844631235877-893789548898985200114
Q gi|254780674|r 321 QLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQ-NEEIKVATIMNATLSADHRSV 399 (423)
Q Consensus 321 ~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~-~~~i~~~~~~~ltls~DHRvi 399 (423)
+|.++++.|+|+|+|+.|||||+||+|.+|+++.-|+|+||||||-++|++.+-|-++ .|++....+|+++|++|||||
T Consensus 368 rLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRVi 447 (474)
T KOG0558 368 RLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVI 447 (474)
T ss_pred HHHHHHHCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEE
T ss_conf 99975413886855505865886301233663457633560666324023100666377897877678898751474233
Q ss_pred EHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 028899999999998719889719
Q gi|254780674|r 400 DGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 400 dGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
||++.|||.++||+|||||+.||+
T Consensus 448 DGaTmarFsn~WK~YlE~Pa~mll 471 (474)
T KOG0558 448 DGATMARFSNQWKEYLENPALMLL 471 (474)
T ss_pred CCHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 237788788889998619787764
No 14
>KOG0559 consensus
Probab=100.00 E-value=0 Score=624.71 Aligned_cols=381 Identities=28% Similarity=0.419 Sum_probs=308.4
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 47867887887217999999816897852798599995265312453687868999992488604035855999970754
Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.++..|.++|+++||+|-+|+|++||+|++||.+++|||||.++||+||++|+|.++++++| |+|..|+.++.|....+
T Consensus 73 vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~g-dtV~~g~~la~i~~gaA 151 (457)
T KOG0559 73 VTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG-DTVTPGQKLAKISPGAA 151 (457)
T ss_pred EEEECCCCCCCCCCCHHHHHHHCCCCCCCCCHHHEEEECCCEEEECCCCCCCEEEEEECCCC-CCCCCCCEEEEECCCCC
T ss_conf 47746885121342419999647464213001311542153233136887642457740789-75047864577358888
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 21111122210001111122-222333222222222222-3432210111100000110123443322210024443200
Q gi|254780674|r 84 EIPPSPPLSKENIVEVREEH-SHSSPVVVREKHSKNRPI-ASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTK 161 (423)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~ 161 (423)
...... ..+.+.+. +.....+.+...++.-+. +.|.++. +.. |
T Consensus 152 pa~~~~------~apa~~~pk~~~a~~a~p~~~s~~~p~~~apv~e~-p~~------------p---------------- 196 (457)
T KOG0559 152 PAKGGA------SAPAKAEPKTAPAAAAPPKPSSKPPPKEAAPVAES-PPA------------P---------------- 196 (457)
T ss_pred CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC------------C----------------
T ss_conf 842345------68776688888888899975678985335887889-999------------9----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 01000111221112444445554654345662465511122110111000123210000012223320467877756655
Q gi|254780674|r 162 TNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTL 241 (423)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~ 241 (423)
....+.++.............+.........+.+++|+|||+.||.|+.+|+++.+.+|+|.||||++|+++|+++|+.|
T Consensus 197 ~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf 276 (457)
T KOG0559 197 SSPEPVPASAKKPSVAQPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAF 276 (457)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999986545755568999931146877502330468899999999776242366663330211899999999989999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 54320146655432221011100110000000011234410125566541565146420203414554798999998766
Q gi|254780674|r 242 QFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQ 321 (423)
Q Consensus 242 ~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~ 321 (423)
. ++.|.|+.|+.+|+||++.||++-|..|+.+|+++|+|+++++|+|||+|+.||+|||||||+.+++.+|.++++.
T Consensus 277 ~---kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~ 353 (457)
T KOG0559 277 L---KKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAG 353 (457)
T ss_pred H---HHHCCEEEEHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9---8738504314688999999863076112356377058852102689960687646543506421459999999998
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEH
Q ss_conf 65431023346100377238985153214221013115887168984463123587789378954889898520011402
Q gi|254780674|r 322 LAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDG 401 (423)
Q Consensus 322 l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidG 401 (423)
|..|||+|+|+-+||.||||||||-|.||..+.||||||||+||||++.|..||++.+|++++|+||++.||||||.|||
T Consensus 354 L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDG 433 (457)
T KOG0559 354 LGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDG 433 (457)
T ss_pred HHHHHCCCCEEEEECCCCEEEEECCCEEEEECCCCCCCCCHHHHHHCCCCCCCCEEECCEEEECCCEEEEEECCCCCCCC
T ss_conf 77764068423543268638975786765300586668716655421324315522278753145067875124210041
Q ss_pred HHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 8899999999998719889719
Q gi|254780674|r 402 AIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 402 a~aa~Fl~~~~~~le~P~~ll~ 423 (423)
.+|..||..+|+++|||..|||
T Consensus 434 REAVtFLr~iK~~VEDP~~mll 455 (457)
T KOG0559 434 REAVTFLRKIKEAVEDPRKMLL 455 (457)
T ss_pred HHHHHHHHHHHHHHHCHHHHHH
T ss_conf 7889999999998638787850
No 15
>pfam00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain). These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.
Probab=100.00 E-value=0 Score=539.66 Aligned_cols=229 Identities=43% Similarity=0.732 Sum_probs=221.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 66246551112211011100012321000001222332046787775665554320146655432221011100110000
Q gi|254780674|r 191 DSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVP 270 (423)
Q Consensus 191 ~~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P 270 (423)
+.++++|+++|||+||++|++||+++||||++.++|+|+|+++|+++|+.+. ..+.|+|+++||+||+++||++||
T Consensus 2 ~~~~~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~----~~~~k~s~~~~likA~a~aL~~~P 77 (231)
T pfam00198 2 GEETRVPLSGIRKAIAKRMTESKQTIPHFTLTDEVDVTALLALREELKADAK----DEGLKLTFLPFLVKAVALALKKFP 77 (231)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9825986738999999999988743986999999988999999999876522----458846479999999999997396
Q ss_pred CCCCCCCCC-CCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 000011234-4101255665415651464202034145547989999987666543102334610037723898515321
Q gi|254780674|r 271 EANVSWTTN-AMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGML 349 (423)
Q Consensus 271 ~~Na~~~~~-~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~ 349 (423)
.+|++|+++ ++++++++||||||++++||+||||||||++++.+|++++++|++|||+|+|+++||+||||||||+|+|
T Consensus 78 ~~Ns~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~~ia~~i~~l~~~ar~gkL~~~d~~ggTfTISNlG~~ 157 (231)
T pfam00198 78 ELNASWDGEAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERAREGKLKPEDLQGGTFTISNLGMF 157 (231)
T ss_pred CCCEEECCCCCEEECCCCCEEEEEECCCCEEEEEECCHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCEEEEECCCCC
T ss_conf 43637827983887156544469975898785258881128999999999999999983999989937965998568874
Q ss_pred CCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf 42210131158871689844631235877893789548898985200114028899999999998719889719
Q gi|254780674|r 350 GINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 (423)
Q Consensus 350 g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ll~ 423 (423)
|+.+|+|||||||+||||+|+++++|++.+|++++|++|++|||||||+|||++||+||++|+++||||+.|||
T Consensus 158 G~~~ftpIinppq~aIl~vG~i~~~pv~~~g~i~~~~~m~lslt~DHRviDGa~aa~Fl~~l~~~le~P~~lll 231 (231)
T pfam00198 158 GVTFFTPIINPPQVAILGVGAIRKRPVVVNGEIVIRKVMTLSLSFDHRVIDGAEAARFLNDLKELLENPELLLL 231 (231)
T ss_pred CCEEEECEECCCCCEEEECCCCEEEEEEECCEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHC
T ss_conf 45037850727986699835436888998996899979999998463240879999999999999739988759
No 16
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=0 Score=327.07 Aligned_cols=221 Identities=23% Similarity=0.372 Sum_probs=206.5
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 62465511122110111000123210000012223320467877756655543201466554322210111001100000
Q gi|254780674|r 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271 (423)
Q Consensus 192 ~~~~vp~s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~ 271 (423)
..+..|+.++.++|++||..|+ ++|..|+...|.+.-|++.|.-+|..+. +..|.|+|||++|.+|+++||++||.
T Consensus 119 ~~~~~~LrG~aa~ia~NMeaSL-~VPTATSvR~vPaKll~dNR~vIN~hL~---R~rggkvsfthlig~a~v~a~~~~p~ 194 (1234)
T PRK12270 119 EDEVTPLRGAAAAVAKNMDASL-EVPTATSVRAVPAKLLIDNRIVINNHLK---RTRGGKVSFTHLIGYALVQALKKFPS 194 (1234)
T ss_pred CCCCEECCCHHHHHHHHHHHHC-CCCCCCHHHHCCHHHHHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 8751133456899987366304-7775331642238999987999988887---52798401667899999999986733
Q ss_pred CCCCCCC--C--CCEECCCCCCCEEEEEC--CC---CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 0001123--4--41012556654156514--64---20203414554798999998766654310233461003772389
Q gi|254780674|r 272 ANVSWTT--N--AMIRHKHIDISVAVSIP--GG---IVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTS 342 (423)
Q Consensus 272 ~Na~~~~--~--~i~~~~~vnIgiAv~~~--~G---L~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtft 342 (423)
||.+|.. + .++.+.+||+|+|+|++ || |+||+||+|+.|++.++...+.+++.|||+|+|+.+|++|.|+|
T Consensus 195 mn~~~~~~dgkp~~~~~~~vn~glaid~~~~dg~r~l~vp~ik~a~~~~f~~f~~ay~d~v~~ar~~~l~~~df~g~t~s 274 (1234)
T PRK12270 195 MNRHYAEVDGKPTAVTPAHINLGLAIDLPGKDGSRQLVVAAIKKAETMNFAQFWTAYEDIVRRARDGKLTADDFQGVTIS 274 (1234)
T ss_pred CCCEEECCCCCEEEECCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEE
T ss_conf 35400324896024156765313688535899845686234365565789999999999999986598767760786698
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEC------CEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHC
Q ss_conf 8515321422101311588716898446312358778------9378954889898520011402889999999999871
Q gi|254780674|r 343 ISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQN------EEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIE 416 (423)
Q Consensus 343 iSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~------~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le 416 (423)
+||.|++|..+..|-+.++|.+|+|||++...+-+++ .++.+.++|+||.|||||+|.||+.+.||+.+.++|-
T Consensus 275 ltnpg~igt~~svprl~~gqg~iigvga~~ypaefqg~s~~~l~~lgiskv~tltstydhriiqga~sg~fl~~i~~ll~ 354 (1234)
T PRK12270 275 LTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVITLTSTYDHRIIQGAESGEFLRTVHQLLL 354 (1234)
T ss_pred ECCCCCCCCCCCCCHHCCCCEEEEEECCCCCCHHHCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCCHHHHHHHHHHHC
T ss_conf 21798645333252003786059863365588554478988998707553698501344100016531679999999852
No 17
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; InterPro: IPR014276 This entry represents the mainly actinobacterial clade of the E2 component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (IPR001078 from INTERPRO), one or two biotin domains (IPR000089 from INTERPRO) and an E3-component binding domain (IPR004167 from INTERPRO)..
Probab=99.94 E-value=6.2e-28 Score=206.54 Aligned_cols=82 Identities=28% Similarity=0.475 Sum_probs=79.5
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
|.+-|+||.||||+|||||++|||++||+|+.||||+||.|||++.|||||.+|+|.+|.++| ||+|.||..|++|..+
T Consensus 1 Ma~SV~MPaLGESVTEGTvt~WLKavGDTVE~DEPLLEVsTDKVDTEiPSPaaGVlleI~a~E-DdTVevGg~lAiIGe~ 79 (607)
T TIGR02927 1 MAISVKMPALGESVTEGTVTRWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPAAGVLLEIKAEE-DDTVEVGGVLAIIGEE 79 (607)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCEEEECCEEEEECCC
T ss_conf 974224766776202312666651068877104762100156206667976033266777367-7802305088986385
Q ss_pred CCC
Q ss_conf 542
Q gi|254780674|r 82 STE 84 (423)
Q Consensus 82 ~~~ 84 (423)
+++
T Consensus 80 gEa 82 (607)
T TIGR02927 80 GEA 82 (607)
T ss_pred CHH
T ss_conf 400
No 18
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.93 E-value=8.6e-26 Score=192.22 Aligned_cols=80 Identities=28% Similarity=0.537 Sum_probs=76.2
Q ss_pred CEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 34786788788721799999981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 3 IHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 3 ~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
.++|+||+|||+|+||+|++|+|++||.|++||+||||||||+++|||||++|+|.+|++++| ++++||++|+.|+.++
T Consensus 117 ~~ev~mP~lGe~m~eg~I~~W~~k~GD~V~~gd~l~eVETDKa~~Ev~sp~~G~l~ki~v~eG-d~v~VG~~ia~i~~~~ 195 (549)
T PRK11855 117 VEEVKVPDIGEGIVEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVG-DKVSVGSLLFKIEVAG 195 (549)
T ss_pred CCEEECCCCCCCCCCEEEEEEECCCCCEECCCCCEEEEEECCCCEEEECCCCCEEEEEEECCC-CCCCCCCEEEEEECCC
T ss_conf 513546888887441377678407898013687257886055312674365875447650589-8045798789972577
Q ss_pred C
Q ss_conf 4
Q gi|254780674|r 83 T 83 (423)
Q Consensus 83 ~ 83 (423)
.
T Consensus 196 ~ 196 (549)
T PRK11855 196 A 196 (549)
T ss_pred C
T ss_conf 7
No 19
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.93 E-value=6.8e-26 Score=192.90 Aligned_cols=87 Identities=55% Similarity=0.903 Sum_probs=82.7
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
|.++|+||.|+.||+||++.+|||||||.|+.||.|+|||||||+||+||.++|+|.||+++||.+.|+|+++|+.|..+
T Consensus 1 m~~~i~mpalsptm~~g~l~kw~~~~gd~v~~gd~~aeietdkatme~ea~deg~~~kilv~~g~~~v~vn~~ia~~~~~ 80 (464)
T PRK11892 1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECC
T ss_conf 98442137789864577121464468975257866899750656689875067488889866777797557623796125
Q ss_pred CCCCCCC
Q ss_conf 5421111
Q gi|254780674|r 82 STEIPPS 88 (423)
Q Consensus 82 ~~~~~~~ 88 (423)
+++....
T Consensus 81 ~e~~~~~ 87 (464)
T PRK11892 81 GESAADA 87 (464)
T ss_pred CCCCCCC
T ss_conf 7653323
No 20
>PRK11854 aceF dihydrolipoamide acetyltransferase; Validated
Probab=99.92 E-value=1.8e-24 Score=183.38 Aligned_cols=81 Identities=26% Similarity=0.401 Sum_probs=75.9
Q ss_pred CCEEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 63478678878872179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 2 m~~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
|.++|+||+||+ +||+|++|||++||+|++||+|++|||||++||||||++|+|.+|++++| |.++||++|+.|..+
T Consensus 1 m~~~i~~Pd~g~--~e~~v~~~l~~~Gd~v~~~~~l~~vetDKa~~evps~~~G~~~~i~v~~g-d~v~~g~~l~~i~~~ 77 (630)
T PRK11854 1 MAIEIKVPDIGA--DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVG-DKVDTGALIMIFESA 77 (630)
T ss_pred CCEEEECCCCCC--CEEEEEEEECCCCCEECCCCCEEEEECCCCCEECCCCCCCEEEEEEECCC-CCCCCCCEEEEEECC
T ss_conf 970676677778--80699998106898776899579998366233666888838999985689-812789868997057
Q ss_pred CCCC
Q ss_conf 5421
Q gi|254780674|r 82 STEI 85 (423)
Q Consensus 82 ~~~~ 85 (423)
....
T Consensus 78 ~~~~ 81 (630)
T PRK11854 78 EGAA 81 (630)
T ss_pred CCCC
T ss_conf 6666
No 21
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.84 E-value=1.2e-20 Score=157.89 Aligned_cols=73 Identities=36% Similarity=0.729 Sum_probs=70.7
Q ss_pred EEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE
Q ss_conf 78678878872179999998168978527985999952653124536878689999924886040358559999
Q gi|254780674|r 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423)
Q Consensus 5 ~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423)
.|+||+||++|+||+|++|++++||.|++||+||+|||||+.+||+||++|++.+|++++| +.+++|++|+.|
T Consensus 1 ti~~P~lg~~~~eg~I~~~~v~~Gd~V~~Gd~l~~iEa~K~~~ei~ap~~G~v~~i~v~~G-~~V~~G~~l~~I 73 (73)
T cd06663 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG-TKVEGDTPLVKI 73 (73)
T ss_pred CEECCCCCCCCEEEEEEEEEECCCCEECCCCEEEEEEEEEEEEEEECCCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf 9777899998307999999926999997999999999500569986699989999995898-997899999979
No 22
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded. dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex.
Probab=99.83 E-value=1.4e-20 Score=157.36 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=76.8
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 47867887887217999999816897852798599995265312453687868999992488604035855999970754
Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
++|++||+|..+.||+|++.||++||+|++||+|++||||||+|||||+..|+|++|.++.| |+++.|.+|+.|+....
T Consensus 1 ~e~~vPDiG~n~~~g~v~evLV~~GD~V~~~Qslit~E~DKA~mEvPss~AG~ik~ikvkVG-Dt~~~G~~i~~l~~~~g 79 (655)
T TIGR01348 1 KEIKVPDIGDNIEEGEVIEVLVKVGDKVEAGQSLITLESDKASMEVPSSKAGIIKEIKVKVG-DTLKEGDVIALLEVSAG 79 (655)
T ss_pred CEECCCCCCCCCCCEEEEEEEECCCCEECCCCCEEEECCCEEEEEECCCCCCEEEEEEEEEC-CCCCCCCEEEEECCCCC
T ss_conf 90005751466775138999868897432687468870671278406899973788975446-65477878999716653
Q ss_pred CC
Q ss_conf 21
Q gi|254780674|r 84 EI 85 (423)
Q Consensus 84 ~~ 85 (423)
+.
T Consensus 80 ~a 81 (655)
T TIGR01348 80 SA 81 (655)
T ss_pred CC
T ss_conf 21
No 23
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.82 E-value=7.8e-20 Score=152.37 Aligned_cols=74 Identities=42% Similarity=0.770 Sum_probs=71.6
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE
Q ss_conf 478678878872179999998168978527985999952653124536878689999924886040358559999
Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423)
Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||+.+|++||++|+|.++++++| |.+++|++|+.|
T Consensus 1 ~~i~~P~~g~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~a~~~G~v~~i~~~~G-~~v~~G~~l~~i 74 (74)
T cd06849 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEG-DTVPVGQVIAVI 74 (74)
T ss_pred CCEECCCCCCCCCEEEEEEEEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf 91775889998506999999927989997899999998585078410798999999987899-998899999979
No 24
>pfam00364 Biotin_lipoyl Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins.
Probab=99.78 E-value=5.9e-19 Score=146.50 Aligned_cols=73 Identities=36% Similarity=0.725 Sum_probs=70.0
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE
Q ss_conf 478678878872179999998168978527985999952653124536878689999924886040358559999
Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423)
Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423)
++|+||+||++|+|++ ++|+|++||.|++||+||+|||||+.++|+||++|+|.++++++| +.+++|++|+.|
T Consensus 1 tei~~P~lG~~~~~~~-~~w~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~i~~i~v~~G-~~V~~G~~l~~I 73 (73)
T pfam00364 1 TEIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEG-DTVEVGDPLAKI 73 (73)
T ss_pred CCEECCCCCCCCEECC-EEEEECCCCEECCCCEEEEEEECCCCCEECCCCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf 9347789879737234-848658989992899899999665352250898889999997998-998999999979
No 25
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=99.76 E-value=8.8e-19 Score=145.35 Aligned_cols=81 Identities=43% Similarity=0.841 Sum_probs=77.0
Q ss_pred EEEECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 47867887887217999999816897852798599995265312453687868999992488604035855999970754
Q gi|254780674|r 4 HTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 4 ~~i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
..+.||.|+.+|+-|+|-+|-||+||++++||.|+|||||||||+++-.++|||.||||++|...|++|+|+|+|....+
T Consensus 128 ~~V~lPALSP~M~~G~~~~W~KK~G~~~~~GD~~AE~ETDKAT~~F~~~~~GYLAKILVP~GT~~~~~~~P~CIIV~~~~ 207 (584)
T TIGR01349 128 KVVLLPALSPSMETGTVARWEKKVGDKLKEGDLLAEVETDKATIDFEVEDEGYLAKILVPEGTRDVQLNTPLCIIVKKKE 207 (584)
T ss_pred CEEECCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCEEECCEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 32324565765566740000134576223375255542252022214635761899872888756637886489972600
Q ss_pred C
Q ss_conf 2
Q gi|254780674|r 84 E 84 (423)
Q Consensus 84 ~ 84 (423)
+
T Consensus 208 D 208 (584)
T TIGR01349 208 D 208 (584)
T ss_pred C
T ss_conf 1
No 26
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.39 E-value=1.7e-12 Score=103.33 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=58.4
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE
Q ss_conf 79999998168978527985999952653124536878689999924886040358559999
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423)
-|+|.+|++++||.|++||+||+||++|..++++||.+|++.++++++| +.+..|++|+.|
T Consensus 7 ~G~v~~~~V~~Gd~V~~G~~l~~iE~mK~~~~i~a~~~G~v~~i~~~~G-~~V~~G~~L~~i 67 (67)
T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEG-DQVEAGQLLVVI 67 (67)
T ss_pred CEEEEEEEECCCCEECCCCEEEEEEECCCEEEEEECCCEEEEEEEECCC-CEECCCCEEEEC
T ss_conf 8899999957999997899999999366119999689999999997898-998999999979
No 27
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.38 E-value=1.8e-11 Score=96.46 Aligned_cols=178 Identities=13% Similarity=0.170 Sum_probs=133.7
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEE
Q ss_conf 21000001222332046787775665554320146655432221011100110000000011234410125566541565
Q gi|254780674|r 215 TIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVS 294 (423)
Q Consensus 215 ~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgiAv~ 294 (423)
.-|+|.++.++|+|+|.+..++ .+++|.+.+++|+.+|+-++|+|+-++.++++++++.+|.+..+-
T Consensus 29 ~~p~fsvT~~vDvT~l~~~~K~-------------~~~sFy~~~ly~v~kavN~~~efR~ri~~g~vv~~D~i~ps~Ti~ 95 (219)
T PRK13757 29 AQCTYNQTVQLDITAFLKTVKK-------------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVF 95 (219)
T ss_pred CCCEEEEEEEEEHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHHCCHHHHEEEECCEEEEEEEEEEEEEEE
T ss_conf 9976999988889999999998-------------399807999999999985686571788899699985531200578
Q ss_pred ECCC-CCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCC----CCCC--EEEE
Q ss_conf 1464-2020341455479899999876665431023-34610037723898515321422101311----5887--1689
Q gi|254780674|r 295 IPGG-IVTPIIRQADQKSILDISLEVKQLAQRAKQR-KLKPEEYQGGTTSISNMGMLGINSFCAVI----NPPQ--STIL 366 (423)
Q Consensus 295 ~~~G-L~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~-~l~~~d~~ggtftiSNlG~~g~~~~~pii----~~pq--~aIL 366 (423)
-+++ ...-+.-. =.-++.++.+.+....++++++ .+.+.......|.||.+ -...||.+= +... +=|+
T Consensus 96 ~~d~etFs~~~~~-y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~l---PW~sFT~~~~~~~~~~~~~~P~i 171 (219)
T PRK13757 96 HEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSAN---PWVSFTSFDLNVANMDNFFAPVF 171 (219)
T ss_pred ECCCCEEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE---CCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 5699508999835-8888999999999999986367787888987888999723---03473544456677888758569
Q ss_pred EECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCC
Q ss_conf 844631235877893789548898985200114028899999999998719
Q gi|254780674|r 367 AIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIEN 417 (423)
Q Consensus 367 gvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~ 417 (423)
..|+..+ .+|. .+|++|+.+.|-++||.++++|++.|.++|..
T Consensus 172 t~GKy~~----~~gr----~~mPvsiqvhHa~~DG~Hv~~F~~~lQ~~~de 214 (219)
T PRK13757 172 TMGKYYT----QGDK----VLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred EEEEEEE----ECCE----EEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 9734698----7997----99989999841111649999999999999987
No 28
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.22 E-value=6.8e-11 Score=92.59 Aligned_cols=61 Identities=28% Similarity=0.553 Sum_probs=58.9
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE
Q ss_conf 79999998168978527985999952653124536878689999924886040358559999
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423)
-|+|++|++++||.|++||+||.+|..|.-.+|.||.+|++.+|++++| |.|..|++|..|
T Consensus 87 pG~v~~v~v~~Gd~V~~g~~l~vlEaMKMe~~i~a~~~G~v~~i~v~~g-~~V~~g~~l~~i 147 (148)
T PRK05641 87 PGKILKILVKEGDQVKTGQGLLILEAMKMENEIPAPKDGVVKKILVKEG-DTVDTGQPLIEL 147 (148)
T ss_pred CEEEEEEEECCCCEECCCCEEEEEEHHCCCEEEEECCCEEEEEEEECCC-CEECCCCEEEEE
T ss_conf 9089999968999987999999999431513999299989989993897-998999989995
No 29
>pfam00302 CAT Chloramphenicol acetyltransferase.
Probab=99.19 E-value=7.6e-10 Score=85.57 Aligned_cols=175 Identities=12% Similarity=0.172 Sum_probs=124.6
Q ss_pred CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC-CCCCEECCCCCCCEEE
Q ss_conf 210000012223320467877756655543201466554322210111001100000000112-3441012556654156
Q gi|254780674|r 215 TIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWT-TNAMIRHKHIDISVAV 293 (423)
Q Consensus 215 ~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~-~~~i~~~~~vnIgiAv 293 (423)
.-|++.++.++|+|+|.+..++ .+++|.+.+++|+.+|+-++|+|+-++. ++++++++.+|.+..+
T Consensus 24 ~~p~~siT~~vDvT~l~~~~K~-------------~~~sF~~~~ly~v~kavN~~~efr~ri~~dg~vv~~d~i~ps~Ti 90 (206)
T pfam00302 24 VPCTYSMTVKLDITALLKALKE-------------KGYKFYPALIYLIARVVNRHPEFRMALNDDGELGYWDSVNPSYTV 90 (206)
T ss_pred CCCEEEEEEEEEHHHHHHHHHH-------------CCCCHHHHHHHHHHHHHHCCHHHHEEEECCCEEEEEEEECEEEEE
T ss_conf 9977999988889999999998-------------299817999999999985586561688389849998674205578
Q ss_pred EECC-CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCCCC-CCCCCEEEEECCCCCCCCCCC-CCCCCCC--EEEEE
Q ss_conf 5146-42020341455479899999876665431023-34610-037723898515321422101-3115887--16898
Q gi|254780674|r 294 SIPG-GIVTPIIRQADQKSILDISLEVKQLAQRAKQR-KLKPE-EYQGGTTSISNMGMLGINSFC-AVINPPQ--STILA 367 (423)
Q Consensus 294 ~~~~-GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~-~l~~~-d~~ggtftiSNlG~~g~~~~~-pii~~pq--~aILg 367 (423)
--++ +...-+- ---.-++.++.+.+....+++++. .+-+. ....-.|.||.+==+.-+.++ ++-+... .=++.
T Consensus 91 ~~~d~~tFs~~~-~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~lPW~~Ft~~~~~~~~~~~~~~P~it 169 (206)
T pfam00302 91 FHKETETFSSLW-TEYDPDFTQFYDNYLSDIAEYGDDTKLFPKGNPPENTFNVSSIPWVSFTGFNLNIANGSDYLAPIFT 169 (206)
T ss_pred EECCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 847996399999-5267879999999999999863245756689998888997312122555554565679877586699
Q ss_pred ECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHH
Q ss_conf 44631235877893789548898985200114028899999999
Q gi|254780674|r 368 IGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKF 411 (423)
Q Consensus 368 vG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~ 411 (423)
.|+..+ ++|. .+|++|+.+.|-++||.++++|++.+
T Consensus 170 ~GKy~~----~~gr----~~mPvsvqvhHa~~DG~Hv~~F~~~l 205 (206)
T pfam00302 170 MGKYYQ----EGNK----ILLPLSIQVHHAVCDGFHAGRFINEL 205 (206)
T ss_pred EEEEEE----ECCE----EEEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 724798----8999----99989999962001619999999974
No 30
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.17 E-value=1.4e-10 Score=90.44 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=59.6
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 799999981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
-|++.+.++++||+|++||.||.||.-|.-+||+||.+|++.+|+++.| |.|..|++|+.|.
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G-~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNG-DPVEYGDPLAVIE 139 (140)
T ss_pred CEEEEEEEECCCCEECCCCEEEEEEEEECCCEECCCCCCEEEEEEECCC-CCCCCCCEEEEEE
T ss_conf 6189998765799975899999998200155322899968999994489-8526899889960
No 31
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.16 E-value=1.9e-10 Score=89.60 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=58.5
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEE
Q ss_conf 9999998168978527985999952653124536878689999924886040358559999
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i 78 (423)
|+|++|++++||.|++||+|+.+|..|.-.+|.||++|++.+|++++| |.|..|++|..|
T Consensus 72 G~v~~i~v~~Gd~V~~g~~l~vlEAMKMe~~i~ap~~G~V~~i~v~~G-~~V~~g~~L~~i 131 (132)
T PRK06549 72 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTITAIHVGPG-QVVNPGDGLITI 131 (132)
T ss_pred EEEEEEEECCCCEECCCCEEEEEEEHHCCCEEECCCCEEEEEEEECCC-CEECCCCEEEEE
T ss_conf 799999938999987999899998010244105899979989994798-998999989994
No 32
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.10 E-value=5e-10 Score=86.81 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=59.3
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 799999981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
-|+|.+|++++||.|++||+|+.+|.-|.-++|.||.+|++.++++++| |.+.-|++++.|+
T Consensus 9 ~G~V~~v~V~~Gd~V~~G~~l~vlEAMKME~~i~A~~~G~V~~i~v~~G-d~V~~G~~L~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEG-DFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEECCCCEECCCCEEEEEEECCCCCEEECCCCEEEEEEEECCC-CEECCCCEEEEEC
T ss_conf 9499999928989989999999997112657684799909999995898-9989999999979
No 33
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.08 E-value=7.9e-10 Score=85.48 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=59.1
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 799999981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
-|+|.++++++||+|++||+|+.+|.-|.-++|.||.+|++.++++++| |.|..|+.|+.|.
T Consensus 10 ~G~V~~v~V~~Gd~V~~Gd~l~vlEAMKME~~v~A~~~G~V~~i~v~~G-d~V~~Gd~L~~Is 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGEGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVG-DVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEECCCCEECCCCEEEEEEHHCCCCEEECCCCCEEEEEEECCC-CEECCCCEEEEEC
T ss_conf 8489999979999988999999998200457784799909979997899-9988999999969
No 34
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.00 E-value=2.2e-09 Score=82.44 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 2221011100110000000011
Q gi|254780674|r 255 NDIILKAFALAMIQVPEANVSW 276 (423)
Q Consensus 255 ~~~l~kA~a~AL~~~P~~Na~~ 276 (423)
.|+.++.++.+|++.+.+=.++
T Consensus 719 ~P~aa~~LV~aLk~~~~lPIhl 740 (1147)
T PRK12999 719 KPAAAYKLVSALKEEVDLPIHL 740 (1147)
T ss_pred CHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8799999999998616984598
No 35
>pfam02817 E3_binding e3 binding domain. This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit.
Probab=98.91 E-value=2e-10 Score=89.52 Aligned_cols=39 Identities=56% Similarity=0.897 Sum_probs=36.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 222234322101111000001101234433222100244
Q gi|254780674|r 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIET 156 (423)
Q Consensus 118 ~~~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~ 156 (423)
+++++||+||++|+|+||||++|.||||+|||+++||++
T Consensus 1 g~i~asP~arkla~e~gidl~~i~GTG~~GrI~k~Dv~a 39 (39)
T pfam02817 1 GRVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCEEHHHHCC
T ss_conf 973248999999999099886767769998584865059
No 36
>PRK07051 hypothetical protein; Validated
Probab=98.89 E-value=1.2e-08 Score=77.65 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCEEEEEEEE-------EEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCC
Q ss_conf 9634786788788721799999-------981689785279859999526531245368786899999248860403585
Q gi|254780674|r 1 MMIHTITMPSLSPTMTEGKLAK-------WIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNS 73 (423)
Q Consensus 1 mm~~~i~mP~lGe~m~egtI~~-------Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~ 73 (423)
|..++|+=|-.| +..+ =++++||.|++||.||.||.-|.-.+|.|+.+|++.+|+++.| |.|.-|+
T Consensus 1 m~~~~I~sPm~G------~fy~~~~p~~~pfV~~Gd~V~~G~~v~iiEaMKm~~~V~A~~~G~V~~ilv~~G-~~V~~Gq 73 (80)
T PRK07051 1 MAQHEIVSPLPG------TFYRRPSPDAPPYVEVGDTVAAGDVVGLVEVMKQFSEVEAEVAGRVVRFLVDDG-EPVDAGQ 73 (80)
T ss_pred CCCCEEECCCCE------EEECCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCC-CEECCCC
T ss_conf 999777289447------898279959998136799988999999997002774672699829999995698-9867999
Q ss_pred EEEEEEC
Q ss_conf 5999970
Q gi|254780674|r 74 PILNILM 80 (423)
Q Consensus 74 ~i~~i~~ 80 (423)
+|+.|+.
T Consensus 74 ~L~~Iee 80 (80)
T PRK07051 74 VLMRIEE 80 (80)
T ss_pred EEEEEEC
T ss_conf 7899829
No 37
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.80 E-value=1.4e-08 Score=77.21 Aligned_cols=56 Identities=32% Similarity=0.555 Sum_probs=52.8
Q ss_pred EEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 23 WIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 23 Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
=++++||.|++||.||.||--|.-.||+|+++|+|.+||++-| +.|.-|++|..|.
T Consensus 100 pFV~vGd~V~~Gq~v~iIEaMK~mneI~a~~~G~I~~Ilv~~G-~~Veygq~Lf~i~ 155 (155)
T PRK06302 100 PFVEVGDTVKEGQTLCIIEAMKMMNEIEADKSGVVKEILVENG-QPVEFGQPLFVIE 155 (155)
T ss_pred CCCCCCCEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCC-CEECCCCEEEEEC
T ss_conf 7424686724898899998424353240698848999985599-8763998269869
No 38
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=98.76 E-value=9.6e-09 Score=78.19 Aligned_cols=57 Identities=30% Similarity=0.559 Sum_probs=54.9
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEE
Q ss_conf 9999998168978527985999952653124536878689999924886040358559
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPI 75 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i 75 (423)
|.|++..+++||.|++||.|+.||.-|.-.||-|+.+|+|.+|+++.| |.|.+|+++
T Consensus 560 G~i~~~~V~~G~~V~~G~vlL~~EAMKME~Ei~A~~aG~V~~i~v~~G-d~V~~gqVL 616 (616)
T TIGR01108 560 GSIVKITVSEGDEVKEGEVLLVVEAMKMETEIKAAAAGIVEEILVKKG-DKVSPGQVL 616 (616)
T ss_pred CCEEEEEECCCCEECCCCEEEEEECCCCCHHHCCCCCCCEEEEEECCC-CEECCCCCC
T ss_conf 736999835787431577588531001112200543570112344578-750886679
No 39
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=98.69 E-value=7.2e-08 Score=72.35 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=59.2
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 1799999981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
-.|++=|.+|++||.|++||+|+.||.-|.=|.|.||.+|+|++|+++.| +.|.-|+.++.|+
T Consensus 1164 ~~G~~WK~~V~~G~~V~~G~~l~i~EaMKmE~~v~Ap~~G~V~~i~~~~G-~~V~aG~~l~~~~ 1226 (1226)
T TIGR02712 1164 VAGNVWKVLVEVGDRVEAGQPLVIIEAMKMEMTVSAPVAGKVTKILCKPG-DMVDAGDILVVLE 1226 (1226)
T ss_pred CEEEEEEEEECCCCEEECCCEEEEEEECCCCEEECCCCCCEEEEEEECCC-CCCCCCCEEEEEC
T ss_conf 20146566521266320487389994357211243898854889973684-8226786378747
No 40
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=98.65 E-value=7e-07 Score=65.73 Aligned_cols=184 Identities=13% Similarity=0.145 Sum_probs=133.3
Q ss_pred CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 01232100000122233204678777566555432014665543222101110011000000001123441012556654
Q gi|254780674|r 211 QSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDIS 290 (423)
Q Consensus 211 ~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnIg 290 (423)
++ ...||+.+..+.|+++.-...++ .+++|.+.++.|+.+++..|++|+-++.++...+++.++..
T Consensus 24 R~-~~~p~y~i~~~LDvtn~~~~vk~-------------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~ 89 (219)
T COG4845 24 RL-LQYPHYDINLQLDVTNFYGYVKE-------------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPM 89 (219)
T ss_pred HH-CCCCEEEEEEEEEHHHHHHHHHH-------------CCCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCC
T ss_conf 32-15505863110101678899997-------------49750699999999985220876753127836896258861
Q ss_pred EEEEECC-CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE-EECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 1565146-420203414554798999998766654310233461003772389-85153214221013115887168984
Q gi|254780674|r 291 VAVSIPG-GIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTS-ISNMGMLGINSFCAVINPPQSTILAI 368 (423)
Q Consensus 291 iAv~~~~-GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtft-iSNlG~~g~~~~~pii~~pq~aILgv 368 (423)
.-|-.++ +++.-+.-. =+.+..++.+-+..-+++.+++.--.. .+.++. +-+++.+-...||.+-.+=+ -
T Consensus 90 ~tv~~~~~e~Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~~~~~--k~~~~~~~~~~s~lPWlsFtslS~~~~-----~ 161 (219)
T COG4845 90 YTVFHGETETFSVLWTE-YQEDYEDFAQLYIEDIEQYGANNYERA--KDPTPCDVYIFSNLPWLSFTSLSHHYR-----R 161 (219)
T ss_pred EEEECCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCEEEEECCCCCCCEEEEEEECC-----C
T ss_conf 68882798579998324-440489999999999998434765335--789865068860456530236631035-----7
Q ss_pred CCCEEEEEE-------ECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHH
Q ss_conf 463123587-------7893789548898985200114028899999999998719889
Q gi|254780674|r 369 GAGEKKVVF-------QNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420 (423)
Q Consensus 369 G~~~~~~~~-------~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ 420 (423)
.++.-.|++ +||++. |+|+...-|-.+||-++++|+..+..++++|-.
T Consensus 162 ~k~~~~PiF~~Grf~~~~Gkl~----lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~ 216 (219)
T COG4845 162 NKIYGQPIFYAGRFYEEDGKLT----LPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPC 216 (219)
T ss_pred CCCCCCEEEEECCEECCCCEEE----EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 7422560476111204488098----767999511235432499999999997458987
No 41
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=98.46 E-value=5.4e-07 Score=66.51 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=60.5
Q ss_pred CCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 788721799999981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 11 LSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 11 lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
+|=.| =|+|++.+++.|+.|++||+|+.+|--|.-|=|.||.+|+|++++|+.| |.|.-++.|+.++
T Consensus 1103 vGApM-pG~v~~v~v~~G~~v~kGd~l~~~~AMKME~~v~ap~~G~vk~v~v~~G-~~i~~~DLL~~le 1169 (1169)
T TIGR01235 1103 VGAPM-PGVVIEVKVEAGQKVNKGDPLVVLEAMKMETVVQAPKDGTVKEVLVKDG-EKIDAKDLLLVLE 1169 (1169)
T ss_pred CCCCC-CCCEEEEEEECCCEECCCCEEEEEECCCCCCEEECCCCCEEEEEEECCC-CCCCCCCEEEEEC
T ss_conf 25689-9707999941387301678489960376320466789972468883588-7035121135409
No 42
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.27 E-value=2.4e-06 Score=62.23 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHH--HHHC-CCCCCCCCCCC--HHHH
Q ss_conf 2210111100000--1101-23443322210--0244
Q gi|254780674|r 125 LARRLAGEHGIDL--SSLS-GSGPHGRIVKS--DIET 156 (423)
Q Consensus 125 ~aRklA~e~giDl--~~V~-GTG~~GRItk~--DV~~ 156 (423)
.+.++|++.|.-+ ...- |-|++=|+..+ |+..
T Consensus 149 e~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~ 185 (1149)
T COG1038 149 EALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAE 185 (1149)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHH
T ss_conf 9999998669858999714798665266258889999
No 43
>KOG0368 consensus
Probab=98.08 E-value=1.1e-05 Score=57.71 Aligned_cols=67 Identities=24% Similarity=0.494 Sum_probs=61.2
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 217999999816897852798599995265312453687868999992488604035855999970754
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
=.-|++++|+|..||+|+.||+-+|||.-|..|.+-|..+|+|. .+.++| +.+..|++++.+..|..
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G-~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEG-DAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCCCCCEEEEECCCCEEECCCEEEEHEEEEEEEEEECCCCCEEE-EECCCC-CCCCCCCEEEEEECCCH
T ss_conf 99862058995489714438720001200024456305786689-835899-73577663788744884
No 44
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.87 E-value=6.1e-05 Score=52.79 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=39.0
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 2179999998168978527985999952653124536878689999924886040358559999707
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
++.++|..+.---|-- +. .-...|-++.+|.|.++++++| |.|+-|++|+.|+.+
T Consensus 18 V~~~~i~~~v~~~G~v----------~a-~~~~~i~a~v~G~I~~i~v~~G-d~V~kGqvL~~ld~~ 72 (347)
T PRK11578 18 VRPGDLQQSVLATGKL----------DA-LRKVDVGAQVSGQLKTLSVAIG-DKVKKDQLLGVIDPE 72 (347)
T ss_pred EEEEEEEEEEEEEEEE----------EE-EEEEEEECCCCEEEEEEECCCC-CEECCCCEEEEECHH
T ss_conf 9998725999999999----------98-3899997407789999998993-988899999998749
No 45
>PRK03598 hypothetical protein; Provisional
Probab=97.73 E-value=0.00022 Score=49.08 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=40.0
Q ss_pred EEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 981689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 23 WIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 23 Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
|+...-+.+...+.-++.. .++|-|..+|+|.+++|++| |.|+-|++|+.|+.+.
T Consensus 24 ~~~~~~~~~~~~~g~ve~~----~V~vs~~v~G~V~~v~V~eG-d~Vk~Gq~La~LD~~~ 78 (331)
T PRK03598 24 WYQSRQDNGLTLYGNVDIR----TVNLSFRVGGRLASLAVDEG-DAVKAGQVLGELDHAP 78 (331)
T ss_pred HEEECCCCCEEEEEEEEEE----EEEECCCCCEEEEEEECCCC-CEECCCCEEEEECCHH
T ss_conf 2140578860357999999----99991327759999986897-9877998899988089
No 46
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.65 E-value=0.00037 Score=47.57 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=37.0
Q ss_pred CCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 9785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 28 GDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 28 GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
...+.-+|.-++- | .+.|-+..+|+|.+++|++| +.|+-|++|+.|+...
T Consensus 36 ~~~~~TddA~V~~--~--iv~Is~~VsG~V~~V~V~eg-q~VkkGq~L~~LD~~~ 85 (348)
T PRK10476 36 DSAPSTDDAYIDA--D--VVHVASEVGGRIVELAVTEN-QAVKKGDLLFRIDPRP 85 (348)
T ss_pred CCEEECCCEEEEE--E--EEEEECCCCEEEEEEEECCC-CEECCCCEEEEECCHH
T ss_conf 6401436259997--9--99993434459999994699-9864897899977689
No 47
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.59 E-value=0.00043 Score=47.13 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=32.3
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 1245368786899999248860403585599997075
Q gi|254780674|r 46 IMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
+++|-+..+|.|.++++++| |.|+-|++|+.|+...
T Consensus 87 ~v~v~~~VsG~I~~i~v~~G-d~VkkGqvLa~iD~~~ 122 (415)
T PRK11556 87 TVTVRSRVDGQLMALHFQEG-QQVKAGDLLAEIDPSQ 122 (415)
T ss_pred EEEEEEEEEEEEEEEECCCC-CEECCCCEEEEECCHH
T ss_conf 99998785029999985898-9978999999988357
No 48
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.54 E-value=0.00049 Score=46.73 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=30.7
Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 245368786899999248860403585599997075
Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
+.|-+.++|+|.+++|++| +.|+-|++|+.|+...
T Consensus 48 v~Vsp~VsG~V~eV~V~dn-q~VkkGdvL~~ID~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDN-QLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEECCCCEEEEEEECCCC-CEECCCCEEEEECCHH
T ss_conf 9993667469999991794-9876998899987617
No 49
>TIGR03077 not_gcvH glycine cleavage protein H homolog, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.42 E-value=0.00018 Score=49.69 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=38.0
Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 999998168978527985999952653124536878689999924
Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63 (423)
Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~ 63 (423)
.-++ +.++|+.|++||++++||+.|++.|+-||++|++.++--.
T Consensus 33 ~~v~-lp~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~VvevN~~ 76 (110)
T TIGR03077 33 LHID-LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIA 76 (110)
T ss_pred EEEE-CCCCCCEEECCCEEEEEEECEEEECCCCCCCEEEEEEHHH
T ss_conf 9997-7899998857985999996516120207876699986684
No 50
>KOG0238 consensus
Probab=97.36 E-value=0.00026 Score=48.60 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=6.5
Q ss_pred EECCCCCCHHHHHHHHHH
Q ss_conf 414554798999998766
Q gi|254780674|r 304 IRQADQKSILDISLEVKQ 321 (423)
Q Consensus 304 Ik~ad~~~l~~i~~~~~~ 321 (423)
+--+.+.+...++..++.
T Consensus 451 ~~~~~~~~~~a~a~~l~~ 468 (670)
T KOG0238 451 ITPAEQLSQAAVASSLNA 468 (670)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 582777789998888777
No 51
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.34 E-value=0.00027 Score=48.46 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=38.1
Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 999998168978527985999952653124536878689999924
Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63 (423)
Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~ 63 (423)
.-++ |.++|+.|++||++++||+.|++.|+-||.+|++.++--.
T Consensus 34 ~~v~-lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~VvevN~~ 77 (113)
T PRK00624 34 LHID-LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNLA 77 (113)
T ss_pred EEEE-CCCCCCEEECCCEEEEEEECCEEECCCCCCCEEEEEEHHH
T ss_conf 9997-7999998847985999996524411218866499985785
No 52
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.31 E-value=0.00038 Score=47.50 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=37.9
Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 9999981689785279859999526531245368786899999248
Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423)
Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423)
.-++ +.++|+.|+.|++++.||++|+..++.||.+|++.++--+.
T Consensus 32 ~~v~-lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~~N~~l 76 (96)
T cd06848 32 VFVE-LPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEAL 76 (96)
T ss_pred EEEE-CCCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEHHHH
T ss_conf 9999-17999701389859999963357887377166999837965
No 53
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.28 E-value=0.0014 Score=43.59 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=31.9
Q ss_pred CEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 31245368786899999248860403585599997075
Q gi|254780674|r 45 AIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 45 a~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
-..++-+..+|.|.++++++| |.|+-|++|+.|+...
T Consensus 60 ~~~~l~~~VsG~v~~~~v~~G-d~VkkGq~La~LD~~~ 96 (385)
T PRK09859 60 EVAEIRPQVGGIIIKRNFIEG-DKVNQGDSLYQIDPAP 96 (385)
T ss_pred EEEEEEEECCEEEEEEECCCC-CEEECCCEEEEECCHH
T ss_conf 899998145629999983899-9884898899828479
No 54
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.15 E-value=0.003 Score=41.49 Aligned_cols=56 Identities=9% Similarity=0.080 Sum_probs=38.9
Q ss_pred ECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 1689785279859999526531245368786899999248860403585599997075
Q gi|254780674|r 25 KQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 25 ~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
++.++.-..-+..-.|+.. -.++|-+..+|.|.++++++| |.|+-|++|+.|+...
T Consensus 43 v~~~~~~~~~~~~G~v~a~-~~v~l~~~v~G~v~~v~v~~G-d~V~kGq~La~lD~~~ 98 (385)
T PRK09578 43 VRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEG-QEVKQGAVLFRIDPAP 98 (385)
T ss_pred EEEECCCEEEEEEEEEEEE-EEEEEEEECCEEEEEEEECCC-CEECCCCEEEEECCHH
T ss_conf 8773322699999999987-999999664469999980799-9873898899985346
No 55
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00052 Score=46.54 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=35.3
Q ss_pred EECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 81689785279859999526531245368786899999
Q gi|254780674|r 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~ 61 (423)
|..+|+.|++||.++.||+-|+..+|.||.+|.+.++-
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCCCCCEECCCCEEEEEEEEEEECCCCCCCCEEEEEEC
T ss_conf 68998711179758999851032025278851699865
No 56
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.08 E-value=0.00063 Score=45.98 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=37.3
Q ss_pred EEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEEC
Q ss_conf 99998168978527985999952653124536878689999924
Q gi|254780674|r 20 LAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVP 63 (423)
Q Consensus 20 I~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~ 63 (423)
-++ |.++|+.|++|++++.||+.|++.++.||.+|++.++--.
T Consensus 42 ~v~-lp~~g~~v~~g~~~~~iEs~K~~~~i~sPvsG~VvevN~~ 84 (132)
T PRK13380 42 FVQ-LPELGTKVEKGKEVATLESVKAASPVPMPLDGEVVEVNDA 84 (132)
T ss_pred EEE-CCCCCCEEECCCEEEEEEECCCCCCCCCCCCCEEEEECHH
T ss_conf 998-8999987517988999997340011127725258885343
No 57
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.07 E-value=0.00074 Score=45.53 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=36.5
Q ss_pred EECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 81689785279859999526531245368786899999248
Q gi|254780674|r 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423)
+.++|+.|++||++..||+.|++.++.||.+|++.++--..
T Consensus 44 lp~~G~~v~~g~~~~~vEs~K~~~~i~sPvsG~Vv~vN~~l 84 (127)
T PRK01202 44 LPEVGDTVKAGESFGVVESVKAASDVYAPVSGEVVEVNEAL 84 (127)
T ss_pred CCCCCCEEECCCEEEEEEECCEECCCCCCCCEEEEEECHHH
T ss_conf 48999887179878999974602111288520899864654
No 58
>pfam01597 GCV_H Glycine cleavage H-protein. This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
Probab=97.05 E-value=0.00078 Score=45.38 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=36.4
Q ss_pred EECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 81689785279859999526531245368786899999248
Q gi|254780674|r 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423)
+.++|+.|++||++++||+.|++.++.||.+|++.++--..
T Consensus 38 lp~~g~~v~~g~~~~~iEs~K~v~~i~sPisG~Vv~vN~~l 78 (122)
T pfam01597 38 LPEVGTKVKKGESLGAVESVKAASEVYAPVSGEVVEVNEKL 78 (122)
T ss_pred CCCCCCEEECCCEEEEEEECCCCCCEECCCCEEEEEEHHHH
T ss_conf 89999985169888999973656414366342799875534
No 59
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.78 E-value=0.013 Score=37.17 Aligned_cols=37 Identities=16% Similarity=0.418 Sum_probs=30.3
Q ss_pred CCEEEEECCCCCEEEEEEE-CCCCCEEECCCEEEEEECC
Q ss_conf 5312453687868999992-4886040358559999707
Q gi|254780674|r 44 KAIMEFESVDEGIIDEILV-PAGTENIAVNSPILNILMD 81 (423)
Q Consensus 44 Ka~~ev~S~~~G~l~~i~v-~eG~e~v~VG~~i~~i~~~ 81 (423)
.-...|.+.++|.|.++++ ..| +.|.-|++++.|-..
T Consensus 119 ~~~~~v~~r~~G~Ie~L~v~~~G-~~V~kGq~L~~lYSP 156 (407)
T PRK09783 119 YQYAIVQARAAGFIDKVYPLTVG-DKVQKGTPLLDLTIP 156 (407)
T ss_pred CCEEEEEECCCCEEEEEEECCCC-CEECCCCEEEEEECH
T ss_conf 73289971035268898742578-787389788999388
No 60
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein; InterPro: IPR001249 The proteins in this family are a component of the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC) and are involved in the first step in long-chain fatty acid synthesis. In plants this is usually located in the chloroplast. In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA. This protein functions in the transfer of CO_2 from one site to another, the biotin binding site locates to the C-terminal of this protein. The biotin is specifically attached to a lysine residue in the sequence AMKM. The structure of the C-terminal domain of the biotin carboxyl carrier (BCC) protein was shown to be a flattened beta-barrel structure comprising two four-stranded beta sheets interrupted by a structural loop forming a thumb structure. The biotinyl-lysine is located on a tight beta-turn on the opposite end of the molecule. The thumb structure has been shown to attached biotin, thus stabilising the structure. ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=96.78 E-value=0.0014 Score=43.70 Aligned_cols=57 Identities=33% Similarity=0.489 Sum_probs=53.3
Q ss_pred EEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEE
Q ss_conf 9981689785279859999526531245368786899999248860403585599997
Q gi|254780674|r 22 KWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNIL 79 (423)
Q Consensus 22 ~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~ 79 (423)
.-+++.||.|++|+.+|.||.-|...++++...|.+..++++.| +-+..|+++..+.
T Consensus 102 ~p~~~~g~~~~~g~~~c~~ea~k~~n~~e~~~~g~~~~~~~~~g-~~~e~g~~l~~~~ 158 (159)
T TIGR00531 102 KPFVEVGDKVNKGDGVCIVEAMKLMNEIEAEVAGEVVEILVEDG-QPVEYGEPLILIE 158 (159)
T ss_pred CCEEEECCEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCC-CCCCCCCEEEEEE
T ss_conf 64021055002463320124555654420024653789974288-5010386246761
No 61
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.65 E-value=0.0026 Score=41.85 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=34.0
Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf 99999816897852798599995265312453687868999992
Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILV 62 (423)
Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v 62 (423)
-.-+.+|||||+|++||+|++=... -.+-+.||.+|+|.+|.-
T Consensus 40 l~pkl~VkeGD~V~~Gq~Lf~dK~~-~~v~~~SPvSG~V~~I~r 82 (448)
T PRK05352 40 LKPTMKVKEGDKVKKGQPLFEDKKN-PGVKFTAPASGTVSAINR 82 (448)
T ss_pred CCCCEEECCCCEECCCCEEEECCCC-CCEEEECCCCEEEEEEEC
T ss_conf 9985685579997479855653898-962696889829952205
No 62
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=96.56 E-value=0.0031 Score=41.35 Aligned_cols=44 Identities=34% Similarity=0.464 Sum_probs=35.5
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECC
Q ss_conf 99999981689785279859999526531--245368786899999248
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAI--MEFESVDEGIIDEILVPA 64 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~--~ev~S~~~G~l~~i~v~e 64 (423)
|..-+.+|+|||+|+.||+||+ ||-. +-+.||++|++.+|.-.+
T Consensus 38 glkPkl~VkeGD~Vk~G~pLF~---dK~np~i~f~SPvsG~V~~I~RG~ 83 (257)
T pfam05896 38 GMKPKMLVKEGDKVKAGQPLFE---DKKNPGVKFTAPASGTVVAINRGA 83 (257)
T ss_pred CCCEEEEEECCCEEECCCEEEE---EECCCCCEEECCCCEEEEEECCCC
T ss_conf 8732699834999855875799---736988468567873895010567
No 63
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.41 E-value=0.022 Score=35.68 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=8.0
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 000001101234433222
Q gi|254780674|r 133 HGIDLSSLSGSGPHGRIV 150 (423)
Q Consensus 133 ~giDl~~V~GTG~~GRIt 150 (423)
-|.||+.+-+--++|..+
T Consensus 82 D~~nlNR~FPG~~~G~~t 99 (298)
T cd06253 82 DNSDINRMFPGDPQGETT 99 (298)
T ss_pred CCCCHHHHCCCCCCCCHH
T ss_conf 898676518899899999
No 64
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=96.12 E-value=0.032 Score=34.59 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=8.6
Q ss_pred EEEECCCCCEEEEEE
Q ss_conf 245368786899999
Q gi|254780674|r 47 MEFESVDEGIIDEIL 61 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~ 61 (423)
..++++..|+=..+-
T Consensus 3 ~~l~~~~~G~~~~l~ 17 (359)
T cd06250 3 IPLPSPAPGTERELT 17 (359)
T ss_pred CCCCCCCCCCCEEEE
T ss_conf 578988899806888
No 65
>TIGR00527 gcvH glycine cleavage system H protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex.
Probab=95.91 E-value=0.007 Score=39.02 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=35.0
Q ss_pred EECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 81689785279859999526531245368786899999
Q gi|254780674|r 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~ 61 (423)
|=.+|+.|+.||++..||+=|+..|+-+|.+|+|.++-
T Consensus 43 LPEvG~~v~~~~~~G~vESVKaaSelY~Pv~Gtv~e~N 80 (132)
T TIGR00527 43 LPEVGAEVSAGESLGSVESVKAASELYAPVDGTVVEVN 80 (132)
T ss_pred CCCCCCEEECCCCEEEEEEECHHHHCCCCCCCEEEEEC
T ss_conf 78847776238970144100003330389874499853
No 66
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=95.74 E-value=0.028 Score=34.92 Aligned_cols=30 Identities=37% Similarity=0.598 Sum_probs=19.4
Q ss_pred CEEEEEEEEEEECCCCEECCCCEEEEEECC
Q ss_conf 721799999981689785279859999526
Q gi|254780674|r 14 TMTEGKLAKWIKQEGDKISPGDILCEIETD 43 (423)
Q Consensus 14 ~m~egtI~~Wl~k~GD~V~~gd~l~eVETD 43 (423)
+-.+|+|.++++++||.|..|++|++|+++
T Consensus 105 Sp~~G~l~kIlv~eGd~V~VG~~la~I~~~ 134 (430)
T PTZ00144 105 SKFSGVLSKIFAEVGDTVLVGKPLCEIDTS 134 (430)
T ss_pred CCCCEEEEEEEECCCCEEECCCEEEEEECC
T ss_conf 778979999863799989469869999668
No 67
>pfam00529 HlyD HlyD family secretion protein.
Probab=95.69 E-value=0.013 Score=37.28 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=31.3
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 1245368786899999248860403585599997075
Q gi|254780674|r 46 IMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
..+|-+.++|+|.+|++++| |.|+-|++|+.|+...
T Consensus 2 ~v~V~~~vsG~V~~i~V~~G-d~VkkGq~L~~lD~~~ 37 (304)
T pfam00529 2 VAEVQPQVSGIVIRILVKEG-DRVKAGDVLVRLDPTP 37 (304)
T ss_pred EEEECCCCCEEEEEEECCCC-CEECCCCEEEEECCHH
T ss_conf 66881789879999986890-9988999899998689
No 68
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=95.46 E-value=0.042 Score=33.80 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=18.6
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCC
Q ss_conf 217999999816897852798599995265
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDK 44 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDK 44 (423)
-.+|+|.+++++|||.|..|++|+.|+++.
T Consensus 51 ~~~G~l~ki~~~eGd~v~VG~~ia~I~~~~ 80 (406)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (406)
T ss_pred CCCEEEEEEEECCCCEECCCCEEEEEECCC
T ss_conf 889899998308989966899899982688
No 69
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.28 E-value=0.034 Score=34.44 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=33.0
Q ss_pred EEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCCC
Q ss_conf 453687868999992488604035855999970754211
Q gi|254780674|r 48 EFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEIP 86 (423)
Q Consensus 48 ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~~ 86 (423)
.+.||..|++.++++++| |.|+.|++++.++..+.+.+
T Consensus 1 ~i~ap~~G~v~~~~V~~G-d~V~~G~~l~~iE~mK~~~~ 38 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEG-DKVEAGQPLAVLEAMKMENE 38 (67)
T ss_pred CEECCCCEEEEEEEECCC-CEECCCCEEEEEEECCCEEE
T ss_conf 910879889999995799-99978999999993661199
No 70
>pfam07247 AATase Alcohol acetyltransferase. This family contains a number of alcohol acetyltransferase (EC:2.3.1.84) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A.
Probab=95.16 E-value=0.28 Score=28.25 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCCCCCCCCHHHHHHHHHHC--CCC---CCCCC------CCCCEE-------CCCCCCCEEEEE-CCC-CCCEEEECCCC
Q ss_conf 65543222101110011000--000---00112------344101-------255665415651-464-20203414554
Q gi|254780674|r 250 NKISVNDIILKAFALAMIQV--PEA---NVSWT------TNAMIR-------HKHIDISVAVSI-PGG-IVTPIIRQADQ 309 (423)
Q Consensus 250 ~kit~~~~l~kA~a~AL~~~--P~~---Na~~~------~~~i~~-------~~~vnIgiAv~~-~~G-L~vPvIk~ad~ 309 (423)
.+.|+|++|--.++.||.++ |.. ...+. .-.+.. ......|.-|+. ... .+-+.-.....
T Consensus 269 ~~tTlT~~L~al~~~aL~~~~~~~~~~~~~~~~~~ip~n~Rr~lp~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 348 (479)
T pfam07247 269 HKCTLTPYIQAVFFVALQETVKPKVKNSEFTTDMAIPINTRRYLPDAEDPEVRDSFKYGTNVGGVHFIPPISPFSIQESK 348 (479)
T ss_pred CCCEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHCCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 69573899999999998764377667650357877530067578876461010010214797226602445632356540
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCC----------------------C---CCCCEEEEECCCCCCCCCCC------CCC
Q ss_conf 7989999987666543102334610----------------------0---37723898515321422101------311
Q gi|254780674|r 310 KSILDISLEVKQLAQRAKQRKLKPE----------------------E---YQGGTTSISNMGMLGINSFC------AVI 358 (423)
Q Consensus 310 ~~l~~i~~~~~~l~~~ar~~~l~~~----------------------d---~~ggtftiSNlG~~g~~~~~------pii 358 (423)
..++++++.+++-..+..+++.... + -.++||.|||+|.+....-. .+-
T Consensus 349 ~~~W~~a~~~~~~i~~~~~~~~~~~~~~~l~~~v~~~~~~~~ki~k~~~~k~r~~s~evSNlG~~~~~~~~~w~I~~~~F 428 (479)
T pfam07247 349 EDFWDLVEYYHQRLSKAISNGRSLNGLGGLLKDVDVKDYNLDKLEKTDYLHQRRGTAEISNLGYFSQSADSKYKIEDLAF 428 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 35689999999999999854677432000022043788778875232346888874999526432578899868968998
Q ss_pred CCCCEEEEEECCCEE-EEE-EECCEEEEEEEEEEEEEEEECEE-EHHHHHHHHHHHHHHH
Q ss_conf 588716898446312-358-77893789548898985200114-0288999999999987
Q gi|254780674|r 359 NPPQSTILAIGAGEK-KVV-FQNEEIKVATIMNATLSADHRSV-DGAIASKLLAKFKEYI 415 (423)
Q Consensus 359 ~~pq~aILgvG~~~~-~~~-~~~~~i~~~~~~~ltls~DHRvi-dGa~aa~Fl~~~~~~l 415 (423)
.+++. + +|.... -++ ..+| .|++++|+---++ |...--.|+..|++.|
T Consensus 429 sQ~~~-v--~~~~f~~sviS~~~G------gL~i~~sw~~~~~~d~~~~~~f~~~~~~~~ 479 (479)
T pfam07247 429 SQPQG-S--LSFAFVLNVISTPIG------GMNLSLSYVDDLDRDQEILDEFCAKLEDKL 479 (479)
T ss_pred ECCCC-C--CCCCEEEEEEECCCC------CEEEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 48988-7--667579999982998------469999755852215789999999997419
No 71
>PRK07051 hypothetical protein; Validated
Probab=95.04 E-value=0.029 Score=34.83 Aligned_cols=24 Identities=25% Similarity=0.785 Sum_probs=12.0
Q ss_pred EEEEEEEECCCCEECCCCEEEEEE
Q ss_conf 999999816897852798599995
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIE 41 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVE 41 (423)
|+|.+|+++.||.|+.||+|++||
T Consensus 56 G~V~~ilv~~G~~V~~Gq~L~~Ie 79 (80)
T PRK07051 56 GRVVRFLVDDGEPVDAGQVLMRIE 79 (80)
T ss_pred CEEEEEEECCCCEECCCCEEEEEE
T ss_conf 299999956989867999789982
No 72
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=95.02 E-value=0.035 Score=34.29 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=29.7
Q ss_pred ECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 36878689999924886040358559999707542
Q gi|254780674|r 50 ESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 50 ~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
|.-..|+|.||+++|| |.|+-|+.|+.|++|+.-
T Consensus 12 ptm~~g~l~kw~~~~g-d~v~~gd~~aeietdkat 45 (464)
T PRK11892 12 PTMEEGTLAKWLKKEG-DKVKSGDVIAEIETDKAT 45 (464)
T ss_pred CCCCCCCCEEEECCCC-CCCCCCCEEEEEEECCEE
T ss_conf 8645771214644689-752578668997506566
No 73
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.01 E-value=0.018 Score=36.31 Aligned_cols=36 Identities=22% Similarity=0.432 Sum_probs=30.6
Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 2453687868999992488604035855999970754
Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
--|-+...|+|.+|+|.|| |.|+-|++++.++.-..
T Consensus 44 k~vQhlegGi~~~I~V~EG-~~V~~Gq~L~~Ld~t~~ 79 (434)
T TIGR01843 44 KVVQHLEGGIVREILVREG-DRVKAGQVLVELDATSV 79 (434)
T ss_pred EEEECCCCCEEEEEEECCC-CEECCCCCCEEECHHHH
T ss_conf 7996686534413552258-64203770135413578
No 74
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.00 E-value=0.044 Score=33.68 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=32.7
Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC
Q ss_conf 245368786899999248860403585599997075421
Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423)
.+|.||..|++.++++++| |.|..|++++.++.-+-+.
T Consensus 2 ~~V~Apm~G~V~~v~V~~G-d~V~~G~~l~vlEAMKME~ 39 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVG-DTVEEGQDVVILESMKMEI 39 (70)
T ss_pred CEEECCCCEEEEEEEECCC-CEECCCCEEEEEEECCCCC
T ss_conf 8785789949999992898-9989999999997112657
No 75
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.85 E-value=0.05 Score=33.30 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=31.2
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC
Q ss_conf 12453687868999992488604035855999970
Q gi|254780674|r 46 IMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423)
-..|.||..|++.++++++| |.|+.|+++++|+.
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vG-d~V~~Gq~l~IiEA 103 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVG-DTVKAGQTLAIIEA 103 (140)
T ss_pred CCEEECCCCEEEEEEEECCC-CEECCCCEEEEEEE
T ss_conf 86674787618999876579-99758999999982
No 76
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.66 E-value=0.11 Score=31.04 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=29.0
Q ss_pred EEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC
Q ss_conf 9999816897852798599995265312453687868999992488604035855999970
Q gi|254780674|r 20 LAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423)
Q Consensus 20 I~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423)
+.+|.++-||.|++||+|..|.. ..|.+|.+|+|.- ++..|. .|+-|--|+.|+.
T Consensus 174 ~~~~~~~IGd~V~kG~vig~v~~----~pV~A~i~GilRG-lirdG~-~V~~G~Ki~dIDP 228 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGL-TVTEGLKIGDVDP 228 (256)
T ss_pred CEECHHHCCCEEECCCEEEEECC----EEEEEECCCEEEE-EECCCC-CCCCCCEEEEECC
T ss_conf 38541441896867968999899----8898765848972-412897-8679988998779
No 77
>PRK03598 hypothetical protein; Provisional
Probab=94.62 E-value=0.081 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=26.7
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCC
Q ss_conf 179999998168978527985999952653
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKA 45 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa 45 (423)
..|+|.+.++++||.|++||+|+++.++..
T Consensus 50 v~G~V~~v~V~eGd~Vk~Gq~La~LD~~~~ 79 (331)
T PRK03598 50 VGGRLASLAVDEGDAVKAGQVLGELDHAPY 79 (331)
T ss_pred CCEEEEEEECCCCCEECCCCEEEEECCHHH
T ss_conf 775999998689798779988999880899
No 78
>PRK06748 hypothetical protein; Validated
Probab=94.25 E-value=0.33 Score=27.84 Aligned_cols=65 Identities=28% Similarity=0.309 Sum_probs=56.7
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 179999998168978527985999952-653124536878689999924886040358559999707
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIET-DKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVET-DKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
-.|++-+.++.+++.|-+=++|+-|+| |+.-..|.--++|.+..+-+++| |.+..+..++.+..|
T Consensus 12 ~~G~Vekifi~e~syVyEWEkL~~I~~~dg~le~v~vGisG~I~~v~Ve~G-q~i~~~~lL~~vedD 77 (84)
T PRK06748 12 CYGKVEKLFVTESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEG-QAIADQKLLITVRDD 77 (84)
T ss_pred CCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECC-CEECCCCEEEEEECC
T ss_conf 630889999858753786423457750698289999821427889886228-465377389998714
No 79
>KOG0559 consensus
Probab=94.20 E-value=0.15 Score=30.14 Aligned_cols=27 Identities=26% Similarity=0.660 Sum_probs=16.0
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECC
Q ss_conf 799999981689785279859999526
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETD 43 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETD 43 (423)
.|+|.+.|+++||+|+.|+.|+.|++-
T Consensus 123 sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559 123 SGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CCEEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 642457740789750478645773588
No 80
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=94.20 E-value=0.068 Score=32.40 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.2
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEE
Q ss_conf 21799999981689785279859999
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEI 40 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eV 40 (423)
-.+|+|.+|++++||.|..|++|+.|
T Consensus 50 ~~~G~l~~i~~~~G~~v~VG~~ia~i 75 (324)
T PRK11856 50 PVAGTLRKILVEEGDVVPVGAPIAVI 75 (324)
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEE
T ss_conf 88839989960897995799989994
No 81
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=94.07 E-value=0.062 Score=32.66 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=4.2
Q ss_pred CCCCCCEEEE
Q ss_conf 5566541565
Q gi|254780674|r 285 KHIDISVAVS 294 (423)
Q Consensus 285 ~~vnIgiAv~ 294 (423)
+.-++++|..
T Consensus 487 ~~~~~~~~~~ 496 (616)
T TIGR01108 487 ENEHVQVAGK 496 (616)
T ss_pred CCCCCCCCCC
T ss_conf 5541240000
No 82
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=93.99 E-value=0.085 Score=31.75 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=32.8
Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCC
Q ss_conf 245368786899999248860403585599997075421
Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEI 85 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~ 85 (423)
-+|.||..|.+.++++++| |.|.-|++++.++.-+-+.
T Consensus 3 e~V~Apm~G~V~~v~V~~G-d~V~~Gd~l~vlEAMKME~ 40 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEG-DQIGEGDTLVLLESMKMEI 40 (71)
T ss_pred CCCCCCCCEEEEEEEECCC-CEECCCCEEEEEEHHCCCC
T ss_conf 5314899848999997999-9988999999998200457
No 83
>pfam00529 HlyD HlyD family secretion protein.
Probab=93.89 E-value=0.091 Score=31.56 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=28.6
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCCEEEE
Q ss_conf 1799999981689785279859999526531245
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAIMEF 49 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev 49 (423)
..|.|.++++++||.|++||+|+++.+.....++
T Consensus 9 vsG~V~~i~V~~Gd~VkkGq~L~~lD~~~~~~~~ 42 (304)
T pfam00529 9 VSGIVIRILVKEGDRVKAGDVLVRLDPTPYQAAL 42 (304)
T ss_pred CCEEEEEEECCCCCEECCCCEEEEECCHHHHHHH
T ss_conf 9879999986890998899989999868999999
No 84
>PRK12784 hypothetical protein; Provisional
Probab=93.75 E-value=0.46 Score=26.81 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=56.5
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEEC-CCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 179999998168978527985999952-653124536878689999924886040358559999707
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIET-DKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVET-DKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
-.|++-+.++.+++.|-+=++|+-|++ |+.-..|.--.+|.+..+-+++| +.+..+..++.+..|
T Consensus 12 c~G~Vekifi~e~SyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~G-q~i~~~tlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVG-QQIHTDTLLVRLEDD 77 (84)
T ss_pred CCCEEEEEEECCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEECC-CEECCCCEEEEEECC
T ss_conf 631888999858753786423457750698289999820116899986228-543477189998603
No 85
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.67 E-value=0.083 Score=31.80 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=38.2
Q ss_pred EEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE---ECCC
Q ss_conf 99981689785279859999526531245368786899999---2488
Q gi|254780674|r 21 AKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL---VPAG 65 (423)
Q Consensus 21 ~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~---v~eG 65 (423)
..-+|++||.|.+||+|.+=+. -..-+-||.+|++.+|. +..|
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~ 90 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHP 90 (529)
T ss_pred CCEEEEECCEEECCCEEECCCC--CEEEEECCCCCEEEEEEECCCCCC
T ss_conf 3448830888850864203678--446542798731335422256885
No 86
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=93.57 E-value=0.09 Score=31.58 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 6878689999924886040358559999707542
Q gi|254780674|r 51 SVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 51 S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
+-.+|.|.+|++++| |.|..|++|+.|++|+..
T Consensus 13 ~~~EG~I~~W~~k~G-D~V~~gd~L~eVeTDKa~ 45 (404)
T COG0508 13 TMTEGTIVEWLKKVG-DKVKEGDVLVEVETDKAT 45 (404)
T ss_pred CCEEEEEEEEEECCC-CEECCCCCEEEEEECCEE
T ss_conf 513678858972699-863699806999806533
No 87
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.78 E-value=0.2 Score=29.26 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=32.4
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 124536878689999924886040358559999707542
Q gi|254780674|r 46 IMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
...|.||-.|++.++++++| |.|..|++|++++.-.-+
T Consensus 63 ~~~v~aPm~G~v~~i~v~~G-d~V~~g~~l~vlEAMKMe 100 (132)
T PRK06549 63 ADAIPSPMPGTILKVLVAVG-DQVTENQPLLILEAMKME 100 (132)
T ss_pred CCEECCCCCEEEEEEEECCC-CEECCCCEEEEEEEHHCC
T ss_conf 99980899979999993899-998799989999801024
No 88
>KOG3373 consensus
Probab=92.70 E-value=0.079 Score=31.97 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=41.3
Q ss_pred EECCCCCCCEEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 86788788721799999981689785279859999526531245368786899999248
Q gi|254780674|r 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423)
Q Consensus 6 i~mP~lGe~m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423)
+.=|.||+- ..++ |=++|-.|.+||.+..||+=|++.||-||.+|.+.+|--+-
T Consensus 74 ~A~~~LGdv----v~ve-LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373 74 FAQEHLGDV----VYVE-LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred HHHHHCCCE----EEEE-CCCCCCCCCCCCCEEEEEEHHHHHHHCCCCCCEEEEECCCC
T ss_conf 556522766----9997-68889722367601144201345653076775278824523
No 89
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.64 E-value=0.24 Score=28.79 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=31.7
Q ss_pred EEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 4536878689999924886040358559999707542
Q gi|254780674|r 48 EFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 48 ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
.|.||-.|++.++++++| |.|+.|++++.++.-+-+
T Consensus 81 ~v~apmpG~v~~v~v~~G-d~V~~g~~l~vlEaMKMe 116 (148)
T PRK05641 81 VVTAPMPGKILKILVKEG-DQVKTGQGLLILEAMKME 116 (148)
T ss_pred EEECCCCEEEEEEEECCC-CEECCCCEEEEEEHHCCC
T ss_conf 797699908999996899-998799999999943151
No 90
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.53 E-value=0.42 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=26.4
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCC
Q ss_conf 179999998168978527985999952653
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKA 45 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa 45 (423)
..|.|.+.++++||.|++||+|++++++--
T Consensus 57 VsG~V~~V~V~egq~VkkGq~L~~LD~~~~ 86 (348)
T PRK10476 57 VGGRIVELAVTENQAVKKGDLLFRIDPRPY 86 (348)
T ss_pred CCEEEEEEEECCCCEECCCCEEEEECCHHH
T ss_conf 445999999469998648978999776899
No 91
>TIGR00998 8a0101 efflux pump membrane protein; InterPro: IPR005694 emrA and emrB confer resistance to carbonylcyanide m-chlorophenylhydrazone, nalidixic acid, and a number of other toxic compounds. EmrB encodes a highly hydrophobic 56.2-kDa peptide, with 14 potential alpha-helices to span the inner membrane. EmrA encodes a putative 42.7-kDa peptide containing a single hydrophobic domain and a large C-terminal hydrophilic domain.; GO: 0015238 drug transporter activity, 0006855 multidrug transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=92.47 E-value=0.17 Score=29.76 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=31.4
Q ss_pred EEEEC-CCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 24536-87868999992488604035855999970754
Q gi|254780674|r 47 MEFES-VDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 47 ~ev~S-~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
++|-| .++|-+.+++++.+ |.|+-|+.+..++....
T Consensus 43 ~~v~sF~VsG~v~~v~~~d~-d~Vk~GD~Lv~LD~t~a 79 (379)
T TIGR00998 43 LQVSSFQVSGSVIEVNVDDT-DYVKQGDVLVRLDPTDA 79 (379)
T ss_pred EEEEEEEEEEEEEEEEECCC-CCCEECCEEEEECCCHH
T ss_conf 02324657324899974378-84203115667677168
No 92
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=92.40 E-value=0.18 Score=29.50 Aligned_cols=36 Identities=11% Similarity=0.204 Sum_probs=30.1
Q ss_pred ECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCCC
Q ss_conf 3687868999992488604035855999970754211
Q gi|254780674|r 50 ESVDEGIIDEILVPAGTENIAVNSPILNILMDSTEIP 86 (423)
Q Consensus 50 ~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~~ 86 (423)
++-.+|++.+|++++| |.|..|++|+.+++++....
T Consensus 9 ~~~~eg~I~~~~v~~G-d~V~~Gd~l~~iEa~K~~~e 44 (73)
T cd06663 9 QHLGDGTVVKWLKKVG-DKVKKGDVLAEIEAMKATSD 44 (73)
T ss_pred CCCEEEEEEEEEECCC-CEECCCCEEEEEEEEEEEEE
T ss_conf 9830799999992699-99979999999995005699
No 93
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase; InterPro: IPR013466 Proteins in this entry are closely related to characterised examples of thymidine phosphorylase (2.4.2.4 from EC) and pyrimidine nucleoside phosphorylase (2.4.2.2 from EC). Most examples are found in the archaea, but other examples are found in bacteria such as Legionella pneumophila (strain Paris) and Rhodopseudomonas palustris CGA009.; GO: 0009032 thymidine phosphorylase activity.
Probab=92.24 E-value=0.11 Score=30.90 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=15.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 203414554798999998766654310
Q gi|254780674|r 301 TPIIRQADQKSILDISLEVKQLAQRAK 327 (423)
Q Consensus 301 vPvIk~ad~~~l~~i~~~~~~l~~~ar 327 (423)
+||=+.|-=.++.|..+--++|.+-++
T Consensus 285 IPvGpgAKV~~~~Ea~~La~~fi~lg~ 311 (499)
T TIGR02645 285 IPVGPGAKVKSLQEAERLAKLFIELGD 311 (499)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 157869753427889999999999874
No 94
>PRK12999 pyruvate carboxylase; Reviewed
Probab=92.23 E-value=0.5 Score=26.59 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=5.3
Q ss_pred CCCCEEEEEEECCC
Q ss_conf 87868999992488
Q gi|254780674|r 52 VDEGIIDEILVPAG 65 (423)
Q Consensus 52 ~~~G~l~~i~v~eG 65 (423)
|..|.|..+..+.|
T Consensus 360 P~~G~i~~~~~p~G 373 (1147)
T PRK12999 360 PDTGRITAYRSPGG 373 (1147)
T ss_pred CCCCEEEEEECCCC
T ss_conf 88774037846999
No 95
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.20 E-value=0.22 Score=29.00 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=32.5
Q ss_pred EEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECC
Q ss_conf 9981689785279859999526531245368786899999248
Q gi|254780674|r 22 KWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 (423)
Q Consensus 22 ~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~e 64 (423)
...|++||.|++|++|+|---. --+-+.||.+|++.+|.-.+
T Consensus 42 ~mkV~~gD~VkkGq~LfEdKkn-pgv~~TapvsG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDKKN-PGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred CCEECCCCEEECCCEEEECCCC-CCEEEECCCCCEEEEEECCC
T ss_conf 4153347722026531121568-98589456782588864465
No 96
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.13 E-value=0.19 Score=29.37 Aligned_cols=29 Identities=34% Similarity=0.659 Sum_probs=26.0
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCC
Q ss_conf 17999999816897852798599995265
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDK 44 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDK 44 (423)
..|+|.++++++||.|++||.|++++...
T Consensus 94 VsG~I~~i~v~~Gd~VkkGqvLa~iD~~~ 122 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPSQ 122 (415)
T ss_pred EEEEEEEEECCCCCEECCCCEEEEECCHH
T ss_conf 50299999858989978999999988357
No 97
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=91.95 E-value=0.25 Score=28.58 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=29.9
Q ss_pred CCCCCEEEEEEECCCCCEEECCCEEEEEECCCCCCC
Q ss_conf 687868999992488604035855999970754211
Q gi|254780674|r 51 SVDEGIIDEILVPAGTENIAVNSPILNILMDSTEIP 86 (423)
Q Consensus 51 S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~~ 86 (423)
+..+|+|.+|++++| |.|..|++|+.+++++....
T Consensus 11 ~~~eg~i~~w~v~~G-d~V~~gd~l~~vEt~K~~~~ 45 (74)
T cd06849 11 SMTEGTIVEWLVKEG-DSVEEGDVLAEVETDKATVE 45 (74)
T ss_pred CCCEEEEEEEEECCC-CEECCCCEEEEEECCCEEEE
T ss_conf 850699999992798-99978999999985850784
No 98
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.86 E-value=0.67 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHCCCCCCCCCC
Q ss_conf 00001101234433222
Q gi|254780674|r 134 GIDLSSLSGSGPHGRIV 150 (423)
Q Consensus 134 giDl~~V~GTG~~GRIt 150 (423)
|.||+.+-+--++|..+
T Consensus 82 ~~nlNR~FPG~~~Gs~t 98 (293)
T cd06255 82 ELDLNRTFPGNPNGMVT 98 (293)
T ss_pred CCCHHHCCCCCCCCCHH
T ss_conf 98664339999999999
No 99
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=91.52 E-value=0.18 Score=29.62 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=34.0
Q ss_pred EEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 99981689785279859999526531245368786899999
Q gi|254780674|r 21 AKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 (423)
Q Consensus 21 ~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~ 61 (423)
.+-.|++||.|.+||.|..=+.= .+.-|-||.||+|.+|-
T Consensus 43 ~~p~V~~GD~VLkGq~Ia~~~G~-~sap~HaPtSG~v~~I~ 82 (444)
T TIGR01945 43 AEPIVKVGDKVLKGQLIAKADGF-VSAPIHAPTSGTVVAIE 82 (444)
T ss_pred CCCEECCCCEEECCCEECCCCCE-EEEEEECCCCCEEEEEE
T ss_conf 77300278652066110067740-78700078110688741
No 100
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.45 E-value=0.28 Score=28.30 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=27.5
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCCEE
Q ss_conf 17999999816897852798599995265312
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAIM 47 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ 47 (423)
.+|+|.+|++++||.|++||+|+++.++..-.
T Consensus 45 v~G~I~~i~v~~Gd~V~kGqvL~~ld~~~~~~ 76 (347)
T PRK11578 45 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAEN 76 (347)
T ss_pred CCEEEEEEECCCCCEECCCCEEEEECHHHHHH
T ss_conf 77899999989939888999999987499999
No 101
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=91.36 E-value=0.36 Score=27.53 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred EEECCCCCEEEEEEECCCCCEEECCCEEEEEEC
Q ss_conf 453687868999992488604035855999970
Q gi|254780674|r 48 EFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423)
Q Consensus 48 ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423)
+|-||..|.|.+++|++| |.|+-|++|++|+.
T Consensus 513 ~V~APmpG~V~~V~Vk~G-d~V~~Gd~L~vlEA 544 (580)
T PRK09282 513 PVTAPMAGNIVKVLVKEG-DKVKEGDVLLILEA 544 (580)
T ss_pred EECCCCCCEEEEEEECCC-CEECCCCEEEEEEH
T ss_conf 532799826999997899-98789998999851
No 102
>pfam00364 Biotin_lipoyl Biotin-requiring enzyme. This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the model may not recognize the Glycine cleavage system H proteins.
Probab=90.55 E-value=0.31 Score=27.97 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.2
Q ss_pred CCEEEEEEECCCCCEEECCCEEEEEECCCCCCC
Q ss_conf 868999992488604035855999970754211
Q gi|254780674|r 54 EGIIDEILVPAGTENIAVNSPILNILMDSTEIP 86 (423)
Q Consensus 54 ~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~~~ 86 (423)
+|+ .+|++++| |.|..|++|+.|++++...+
T Consensus 14 ~~~-~~w~v~~G-d~V~~g~~l~~iEt~K~~~~ 44 (73)
T pfam00364 14 EGT-AEWLVKVG-DKVKAGQVLCEVEAMKMEME 44 (73)
T ss_pred ECC-EEEEECCC-CEECCCCEEEEEEECCCCCE
T ss_conf 234-84865898-99928998999996653522
No 103
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.
Probab=90.29 E-value=0.17 Score=29.76 Aligned_cols=53 Identities=30% Similarity=0.405 Sum_probs=38.2
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECCCCCEEECCCEEE
Q ss_conf 99999981689785279859999526531--245368786899999248860403585599
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAI--MEFESVDEGIIDEILVPAGTENIAVNSPIL 76 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~--~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~ 76 (423)
|-.-+..+.+||.|+.|++|+| ||.- +-++||++|.|.+|- =| +.=.+=+++.
T Consensus 38 g~~p~~~v~~GD~V~~G~~L~~---~K~~P~v~fTsPvsG~V~ai~--RG-~KR~Llsvvi 92 (466)
T TIGR01936 38 GLRPKMKVRPGDKVKAGQVLFE---DKKNPGVKFTSPVSGEVVAIN--RG-AKRVLLSVVI 92 (466)
T ss_pred CCCCEEEEEECCEEEECCHHHH---HCCCCCCEEECCCCCEEEEEE--CC-CCCEEEEEEE
T ss_conf 8665067700770100222333---026898568617775699974--18-9724647888
No 104
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=90.14 E-value=0.46 Score=26.85 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=43.7
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECC--CEEEEEECCCCC
Q ss_conf 2179999998168978527985999952653124536878689999924886040358--559999707542
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVN--SPILNILMDSTE 84 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG--~~i~~i~~~~~~ 84 (423)
.+-|.-.+-+|++||.|.+||.|.+-+. -.+..|.||.||+|..|---.- .=+-| .+-.+|+.|+.+
T Consensus 49 QHiGap~~p~VkvGD~VlkGQ~I~~~~g-~vsapVHAptSGtV~aIe~~~~--~HpsG~~~~~VvIe~DG~D 117 (725)
T PRK05035 49 QHIGAEGELLVSVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVTAIEPRPT--AHPSGLAELCVVIEADGED 117 (725)
T ss_pred CCCCCCCCCCCCCCCEECCCCEEEECCC-CEEEEEECCCCEEEEEEEECCC--CCCCCCCCCEEEEECCCCC
T ss_conf 7799877141478999768887454698-4586056799829987501215--7998885545999248866
No 105
>pfam02749 QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The N-terminal domain has an alpha/beta hammerhead fold.
Probab=89.74 E-value=0.41 Score=27.18 Aligned_cols=23 Identities=30% Similarity=0.891 Sum_probs=20.1
Q ss_pred EEEEECCCCEECCCCEEEEEECC
Q ss_conf 99981689785279859999526
Q gi|254780674|r 21 AKWIKQEGDKISPGDILCEIETD 43 (423)
Q Consensus 21 ~~Wl~k~GD~V~~gd~l~eVETD 43 (423)
++|++++||.|++||+|++++-+
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T pfam02749 47 VEWLVKDGERVEAGDVILEIEGP 69 (88)
T ss_pred EEEECCCCCEECCCCEEEEEEEC
T ss_conf 99996889991799999999988
No 106
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=89.56 E-value=0.58 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=25.6
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCC
Q ss_conf 17999999816897852798599995265
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDK 44 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDK 44 (423)
..|.|.++++++||.|++||+|+.+++.-
T Consensus 70 v~G~v~~v~v~~Gd~V~kGq~La~lD~~~ 98 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAP 98 (385)
T ss_pred CCEEEEEEEECCCCEECCCCEEEEECCHH
T ss_conf 44699999807999873898899985346
No 107
>pfam09891 DUF2118 Uncharacterized protein conserved in archaea (DUF2118). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=89.46 E-value=1.3 Score=23.73 Aligned_cols=45 Identities=33% Similarity=0.374 Sum_probs=36.3
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCCCEEE-EECCCCCEEEEE
Q ss_conf 179999998168978527985999952653124-536878689999
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAIME-FESVDEGIIDEI 60 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~e-v~S~~~G~l~~i 60 (423)
.||--+--...+||.|.+||.++-+.|-|-.+- +-||++|++.=+
T Consensus 86 veGy~v~~i~~~G~rV~~g~~lA~v~T~KGevR~~~spv~G~Vv~i 131 (149)
T pfam09891 86 AEGYKVYPIVDEGDRVLKGDRLAAVTTRKGEVRYVRSPVEGTVVFI 131 (149)
T ss_pred ECCEEEEEECCCCCEEECCCEEEEEEECCCEEEEECCCCCEEEEEE
T ss_conf 0746998872656477218648999816841799449976899999
No 108
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=89.17 E-value=0.4 Score=27.22 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 11221101110001232100000122233204678777566555432014665543222101110011000000001123
Q gi|254780674|r 199 DNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTT 278 (423)
Q Consensus 199 s~irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~~~ 278 (423)
.+++++| .+.++ .-+|+.-+||.+.+|.++-+-++. |..+=|+
T Consensus 170 Gs~~~Av----~~aR~-~~~~~~kiEVEVenlE~a~eA~~A---------GADiImL----------------------- 212 (276)
T TIGR00078 170 GSIEKAV----KRARA-ALPFAKKIEVEVENLEEAEEAAEA---------GADIIML----------------------- 212 (276)
T ss_pred CCHHHHH----HHHHH-HCCCCCEEEEEECCHHHHHHHHHC---------CCCEEEC-----------------------
T ss_conf 8989999----99998-489980799862898999999970---------9959980-----------------------
Q ss_pred CCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHH---HCCCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 44101255665415651464202034145547989999987666543---102334610037723898515321422101
Q gi|254780674|r 279 NAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQR---AKQRKLKPEEYQGGTTSISNMGMLGINSFC 355 (423)
Q Consensus 279 ~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~---ar~~~l~~~d~~ggtftiSNlG~~g~~~~~ 355 (423)
|+++..+|...++.+..+ ++ =|-||| +|.-|+-.|-.+.-+
T Consensus 213 -----------------------------DNm~p~~~~~av~~~~~~~p~~~------~EaSGG-itl~n~~~ya~~gVD 256 (276)
T TIGR00078 213 -----------------------------DNMKPEEIKEAVELLKGRNPNVL------VEASGG-ITLDNIEEYAETGVD 256 (276)
T ss_pred -----------------------------CCCCHHHHHHHHHHHHHCCCEEE------EEEECC-CCHHHHHHHHHCCCC
T ss_conf -----------------------------69894799999999970299089------998369-987899998408975
Q ss_pred CCCCCCCEEEEEECCCEEEE
Q ss_conf 31158871689844631235
Q gi|254780674|r 356 AVINPPQSTILAIGAGEKKV 375 (423)
Q Consensus 356 pii~~pq~aILgvG~~~~~~ 375 (423)
.+++|++....
T Consensus 257 ---------~IS~G~lThs~ 267 (276)
T TIGR00078 257 ---------VISSGALTHSV 267 (276)
T ss_pred ---------EEECCCHHHEE
T ss_conf ---------88327411200
No 109
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=88.92 E-value=0.72 Score=25.53 Aligned_cols=29 Identities=34% Similarity=0.481 Sum_probs=25.6
Q ss_pred EEEEEEEEEECCCCEECCCCEEEEEECCC
Q ss_conf 17999999816897852798599995265
Q gi|254780674|r 16 TEGKLAKWIKQEGDKISPGDILCEIETDK 44 (423)
Q Consensus 16 ~egtI~~Wl~k~GD~V~~gd~l~eVETDK 44 (423)
..|.|.++++++||.|++||+|+++....
T Consensus 68 VsG~v~~~~v~~Gd~VkkGq~La~LD~~~ 96 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAP 96 (385)
T ss_pred CCEEEEEEECCCCCEEECCCEEEEECCHH
T ss_conf 56299999838999884898899828479
No 110
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family; InterPro: IPR010129 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Type I secretion is an ABC transporter that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C terminus of the transported protein. This entry represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This entry selects a group of sequences closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.; GO: 0015031 protein transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=88.77 E-value=0.46 Score=26.86 Aligned_cols=39 Identities=21% Similarity=0.475 Sum_probs=30.9
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 2179999998168978527985999952653124536878689
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGII 57 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l 57 (423)
.+-|.|-+.+|+|||.|++||+|+++.+ ..+.|......
T Consensus 49 legGi~~~I~V~EG~~V~~Gq~L~~Ld~----t~~~A~~~~~~ 87 (434)
T TIGR01843 49 LEGGIVREILVREGDRVKAGQVLVELDA----TSVEADAAELE 87 (434)
T ss_pred CCCCEEEEEEECCCCEECCCCCCEEECH----HHHHHHHHHHH
T ss_conf 8653441355225864203770135413----57899999999
No 111
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=88.10 E-value=0.47 Score=26.77 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=17.1
Q ss_pred EEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 9999248860403585599997075
Q gi|254780674|r 58 DEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 58 ~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
.++++++| +.+.-|++|+.+....
T Consensus 87 ~~~~~~DG-~~v~~G~~i~~i~G~a 110 (296)
T PRK09016 87 IEWHVDDG-DKITANQTLCELTGPA 110 (296)
T ss_pred EEEECCCC-CCCCCCCEEEEEEECH
T ss_conf 99987989-8838999999999768
No 112
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=88.02 E-value=0.66 Score=25.81 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECC
Q ss_conf 53124536878689999924886040358559999707
Q gi|254780674|r 44 KAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMD 81 (423)
Q Consensus 44 Ka~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~ 81 (423)
.-..++.++..|.+.++++++| |.|+.|++++.++..
T Consensus 64 ~~~~~v~~~~~G~v~~i~v~~G-~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 64 TRSVEVLARVAGIVAEILVKEG-DRVKKGQLLARLDPS 100 (372)
T ss_pred EEEEEEECCCCCEEEEEEECCC-CEEECCCEEEEECCH
T ss_conf 1347874036747989983689-888359748995532
No 113
>pfam07831 PYNP_C Pyrimidine nucleoside phosphorylase C-terminal domain. This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as E. coli thymidine phosphorylase (TP). The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer.
Probab=88.01 E-value=0.41 Score=27.15 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=21.9
Q ss_pred EEEEEEEEECCCCEECCCCEEEEEECCC
Q ss_conf 7999999816897852798599995265
Q gi|254780674|r 17 EGKLAKWIKQEGDKISPGDILCEIETDK 44 (423)
Q Consensus 17 egtI~~Wl~k~GD~V~~gd~l~eVETDK 44 (423)
-+.=+.++++.||.|++|||||.|=++.
T Consensus 30 ~~vGi~l~~k~Gd~V~~g~pl~~i~~~~ 57 (75)
T pfam07831 30 PGAGIYLHKKVGDKVKKGDPLATIYAND 57 (75)
T ss_pred HHHHHHEECCCCCEECCCCEEEEEECCC
T ss_conf 1122540246899966999399997799
No 114
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.63 E-value=0.66 Score=25.79 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 68999992488604035855999970754
Q gi|254780674|r 55 GIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 55 G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
++-.++++++| +.+..|+.|+.+.....
T Consensus 75 ~i~v~~~~~DG-~~v~~G~~i~~i~G~a~ 102 (288)
T PRK06978 75 SIEVQWRYREG-DRMTADSTVCELEGPAR 102 (288)
T ss_pred CEEEEEECCCC-CEECCCCEEEEEEECHH
T ss_conf 72999983889-89179999999998879
No 115
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family; InterPro: IPR014315 Members of this protein are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. (strain PCC 7120) is partially characterised as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. which has seven members..
Probab=86.64 E-value=0.25 Score=28.57 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=27.6
Q ss_pred EEEECCCC-----CEEEEEE-ECCCCCEEECCCEEEEEECCCC
Q ss_conf 24536878-----6899999-2488604035855999970754
Q gi|254780674|r 47 MEFESVDE-----GIIDEIL-VPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 47 ~ev~S~~~-----G~l~~i~-v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
+.|-+|-+ --|.+|| |.|| |.|..|++|++++.-..
T Consensus 14 ~~v~aP~~Gf~g~~Ri~~LlPV~eG-D~V~~Gq~lA~Ld~~~~ 55 (363)
T TIGR02971 14 VAVAAPSSGFAGTDRIKKLLPVAEG-DRVKAGQVLAELDSRPE 55 (363)
T ss_pred EEEECCCCCCCCCCHHHHHCCCCCC-CCCCCCCEEEEECCCHH
T ss_conf 8841478888775315550677888-70115753676457057
No 116
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=86.42 E-value=0.85 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCEE------------------EEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 53124536878689------------------99992488604035855999970754
Q gi|254780674|r 44 KAIMEFESVDEGII------------------DEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 44 Ka~~ev~S~~~G~l------------------~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
++...+-+..+|++ ..+++++| |.+.-|+.|+.+..+..
T Consensus 34 ~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG-~~v~~g~~i~~~~G~a~ 90 (280)
T COG0157 34 KAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDG-DRVKPGDVLAEIEGPAR 90 (280)
T ss_pred EEEEEEEECCCCEEECHHHHHHHHHHHCCCEEEEEECCCC-CEECCCCEEEEEECCHH
T ss_conf 4799999737968876799999999809766898872888-88079978999956588
No 117
>PRK04350 thymidine phosphorylase; Provisional
Probab=86.42 E-value=0.92 Score=24.83 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=6.0
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 43322210024443
Q gi|254780674|r 145 PHGRIVKSDIETLI 158 (423)
Q Consensus 145 ~~GRItk~DV~~~~ 158 (423)
-+||...-.+-+|+
T Consensus 119 ~~~~~sd~e~aaFl 132 (502)
T PRK04350 119 VAGRYSDIELSAFL 132 (502)
T ss_pred HHCCCCHHHHHHHH
T ss_conf 82767899999999
No 118
>pfam00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.
Probab=86.36 E-value=0.76 Score=25.37 Aligned_cols=11 Identities=27% Similarity=0.093 Sum_probs=5.6
Q ss_pred EECCCCCEEEE
Q ss_conf 53687868999
Q gi|254780674|r 49 FESVDEGIIDE 59 (423)
Q Consensus 49 v~S~~~G~l~~ 59 (423)
|-||.+|.+..
T Consensus 6 i~aP~~G~vi~ 16 (133)
T pfam00358 6 LASPITGEIVP 16 (133)
T ss_pred EEECCCCEEEE
T ss_conf 96027827988
No 119
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.34 E-value=0.85 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 7868999992488604035855999970754
Q gi|254780674|r 53 DEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 53 ~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
..++-.+++++.| +.+..|+.|+.+.....
T Consensus 72 ~~~~~v~~~~~DG-~~v~~G~~i~~i~G~a~ 101 (288)
T PRK07896 72 TDGYRVLDRVEDG-ARVPPGQALLTVTAPTR 101 (288)
T ss_pred CCCEEEEEECCCC-CEECCCCEEEEEEECHH
T ss_conf 9984999986889-89079989999996789
No 120
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=85.75 E-value=0.6 Score=26.06 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=6.1
Q ss_pred EEECCCCCEEEE
Q ss_conf 453687868999
Q gi|254780674|r 48 EFESVDEGIIDE 59 (423)
Q Consensus 48 ev~S~~~G~l~~ 59 (423)
+|-||++|++..
T Consensus 37 ~v~AP~~G~V~~ 48 (124)
T cd00210 37 KVVAPVDGTIVQ 48 (124)
T ss_pred EEECCCCEEEEE
T ss_conf 899078979999
No 121
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.01 E-value=1.1 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 4554798999998766654310233461003772389851532142210131158871689844631235
Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKV 375 (423)
Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~ 375 (423)
--|++++.++.+.+..+..++. -|-|| .+|..|+..|.....+ .+++|+.....
T Consensus 217 mLDNmsp~~~~~av~~~~~~~~------~EaSG-gI~~~ni~~yA~tGvD---------~IS~g~lthsa 270 (281)
T PRK06106 217 LLDNMSPDTLREAVAIVAGRAI------TEASG-RITPETAPAIAASGVD---------LISVGWLTHSA 270 (281)
T ss_pred EECCCCHHHHHHHHHHHCCCEE------EEEEC-CCCHHHHHHHHHCCCC---------EEECCHHHCCC
T ss_conf 9879999999999998568468------99978-9999999999973999---------99838432699
No 122
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=84.99 E-value=3 Score=21.37 Aligned_cols=157 Identities=19% Similarity=0.256 Sum_probs=86.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEEEEECC-------------CCCCEEEECCCCCCHHHH
Q ss_conf 6655432221011100110000000011234410125566541565146-------------420203414554798999
Q gi|254780674|r 249 SNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPG-------------GIVTPIIRQADQKSILDI 315 (423)
Q Consensus 249 ~~kit~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgiAv~~~~-------------GL~vPvIk~ad~~~l~~i 315 (423)
..+.|++++++.|..+- |.-|+..+--.+.++-|++.||.-. +.+.=+|+..|--++...
T Consensus 236 ~~gaTiNDiilaa~~~f-------r~~y~~~~~k~~~~lsi~~~VDlRkyl~sk~~sI~Nls~~~~i~I~~dd~~~fe~t 308 (439)
T COG4908 236 VHGATINDIILAALLKF-------RLLYNTTHEKANNYLSIDMPVDLRKYLPSKEESISNLSSYLTIVINVDDVTDFEKT 308 (439)
T ss_pred HCCCCHHHHHHHHHHHH-------HHHHHHHCHHHCCEEEECEEEEHHHHCCCCCCCEECCCEEEEEEEECCCCCCHHHH
T ss_conf 04881889999999999-------99875303021370351205444541664454110343058999844212458999
Q ss_pred HHHHHHHHHHHCCC--------------------------CCCCCCCCCCEEEEECCCCCC--CCCCCCCCCCCCEEEEE
Q ss_conf 99876665431023--------------------------346100377238985153214--22101311588716898
Q gi|254780674|r 316 SLEVKQLAQRAKQR--------------------------KLKPEEYQGGTTSISNMGMLG--INSFCAVINPPQSTILA 367 (423)
Q Consensus 316 ~~~~~~l~~~ar~~--------------------------~l~~~d~~ggtftiSNlG~~g--~~~~~pii~~pq~aILg 367 (423)
.+.+++....-+.| ++..+++.-|-.+ ||+|-+. +.-|.-..--.... -
T Consensus 309 ~~~vk~~~~~~k~gl~g~~~~yl~~ilp~~fkr~~~~~~kk~~~~~~~~g~ss-TNiG~id~~~~~f~g~~~d~~~~--~ 385 (439)
T COG4908 309 LEKVKGIMNPKKIGLAGLYSFYLLGILPLMFKRKLYLKLKKLVEDRFVEGKSS-TNIGIIDEEVPPFGGEAEDTDAF--F 385 (439)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCEECCCCEE--E
T ss_conf 99998636865357288999999877589999999998888888876446543-56331366557868630565449--9
Q ss_pred ECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHH-HHHHHHHHHHHHC
Q ss_conf 446312358778937895488989852001140288-9999999999871
Q gi|254780674|r 368 IGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAI-ASKLLAKFKEYIE 416 (423)
Q Consensus 368 vG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~-aa~Fl~~~~~~le 416 (423)
+|.....|++.=+-=..+..++||..| ||-=|+.. ...|+.+|+..|-
T Consensus 386 ~~p~~~ap~Fpl~~tt~g~~~tLtinf-~r~~dk~~~~~~fl~~f~~~l~ 434 (439)
T COG4908 386 FGPCKYAPVFPLGVTTYGYKLTLTINF-YRTNDKKKITGHFLDLFAKELR 434 (439)
T ss_pred EEECCCCCCCEEEEEEECCCEEEEEEE-EEECCCCHHHHHHHHHHHHHHH
T ss_conf 963466754426788853634899998-8605751179999999986767
No 123
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase; InterPro: IPR000053 Two highly similar activities are represented in this group: thymidine phosphorylase (TP, gene deoA, 2.4.2.4 from EC) and pyrimidine-nucleoside phosphorylase (PyNP, gene pdp, 2.4.2.2 from EC). Both are dimeric enzymes that function in the salvage pathway to catalyse the reversible phosphorolysis of pyrimidine nucleosides to the free base and sugar moieties. In the case of thymidine phosphorylase, thymidine (and to a lesser extent, 2'-deoxyuridine) is lysed to produce thymine (or uracil) and 2'-deoxyribose-1-phosphate. Pyrimidine-nucleoside phosphorylase performs the analogous reaction on thymidine (to produce the same products) and uridine (to produce uracil and ribose-1-phosphate). PyNP is typically the only pyrimidine nucleoside phosphorylase encoded by Gram positive bacteria, while eukaryotes and proteobacteria encode two: TP, and the unrelated uridine phosphorylase. In humans, TP was originally characterised as platelet-derived endothelial cell growth factor and gliostatin . Structurally, the enzymes are homodimers, each composed of a rigid all alpha-helix lobe and a mixed alpha-helix/beta-sheet lobe, which are connected by a flexible hinge , . Prior to substrate binding, the lobes are separated by a large cleft. A functional active site and subsequent catalysis occurs upon closing of the cleft. The active site, composed of a phosphate binding site and a (deoxy)ribonucleotide binding site within the cleft region, is highly conserved between the two enzymes of this group. Active site residues (Escherichia coli DeoA numbering) include the phosphate binding Lys84 and Ser86 (close to a glycine-rich loop), Ser113, and Thr123, and the pyrimidine nucleoside-binding Arg171, Ser186, and Lys190. Sequence comparison between the active site residues for both enzymes reveals only one difference , which has been proposed to partially mediate substrate specificity. In TP, position 111 is a methionine, while the analogous position in PyNP is lysine. It should be noted that the uncharacterised archaeal members of this family differ in a number of respects from either of the characterised activities. The residue at position 108 is lysine, indicating the activity might be PyNP-like (though the determinants of substrate specificity have not been fully elucidated). Position 171 is glutamate (negative charge side chain) rather than arginine (positive charge side chain). In addition, a large loop that may "lock in" the substrates within the active site is much smaller than in the characterised members. It is not clear what effect these and other differences have on activity and specificity.; GO: 0006206 pyrimidine base metabolic process.
Probab=84.88 E-value=1 Score=24.50 Aligned_cols=16 Identities=13% Similarity=-0.095 Sum_probs=6.3
Q ss_pred HHHHHHCCCCCCCCCC
Q ss_conf 0011000000001123
Q gi|254780674|r 263 ALAMIQVPEANVSWTT 278 (423)
Q Consensus 263 a~AL~~~P~~Na~~~~ 278 (423)
.+|+..|-.|...-.|
T Consensus 309 G~A~~~F~~~v~aQGG 324 (425)
T TIGR02644 309 GKALEKFKEFVEAQGG 324 (425)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 6999999999984085
No 124
>pfam02666 PS_Dcarbxylase Phosphatidylserine decarboxylase. This is a family of phosphatidylserine decarboxylases, EC:4.1.1.65. These enzymes catalyse the reaction: Phosphatidyl-L-serine <= phosphatidylethanolamine + CO2. Phosphatidylserine decarboxylase plays a central role in the biosynthesis of aminophospholipids by converting phosphatidylserine to phosphatidylethanolamine.
Probab=84.52 E-value=2.8 Score=21.55 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=8.9
Q ss_pred EEECCCCCEEEEE
Q ss_conf 4536878689999
Q gi|254780674|r 48 EFESVDEGIIDEI 60 (423)
Q Consensus 48 ev~S~~~G~l~~i 60 (423)
-+-||+||++..+
T Consensus 22 ~ivSPaDG~v~~~ 34 (201)
T pfam02666 22 AVVSPADGKVTAI 34 (201)
T ss_pred EEEECCCCEEEEE
T ss_conf 9997999499999
No 125
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.03 E-value=1.3 Score=23.79 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=19.1
Q ss_pred EEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 999924886040358559999707542
Q gi|254780674|r 58 DEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 58 ~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
.++++++| +.+..|++|+.+......
T Consensus 59 v~~~~~dG-~~v~~g~~i~~i~G~~~~ 84 (272)
T PRK05848 59 CVWTIKDG-ESFKKGDTLMEIRGDFSM 84 (272)
T ss_pred EEEEECCC-CEECCCCEEEEEEECHHH
T ss_conf 99990889-890699999999977899
No 126
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.69 E-value=1.4 Score=23.60 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEC
Q ss_conf 45547989999987666543102334610037723898515321422101311588716898446312358778
Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQN 379 (423)
Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~ 379 (423)
-.|++++.++.+.+..+.+....+++.- +.+ |.++..|+..|.-+..+ .+++|+....+.+.|
T Consensus 208 ~LDn~s~e~~~~~v~~l~~~~~~~~v~i-eaS-GGI~~~ni~~ya~tGVD---------~IS~g~lt~s~~~~D 270 (279)
T PRK08385 208 MLDNMTPEEIREVIEALKELGLREKVKI-EVS-GGITPETIAEYAKLDVD---------VISLGALTHSVRNFD 270 (279)
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCEEE-EEE-CCCCHHHHHHHHHCCCC---------EEECCHHHCCCCCCC
T ss_conf 9849999999999999875076897899-997-89989999999855989---------998497776996213
No 127
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=83.60 E-value=1.4 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCCCEE----------------EEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 2653124536878689----------------999924886040358559999707542
Q gi|254780674|r 42 TDKAIMEFESVDEGII----------------DEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 42 TDKa~~ev~S~~~G~l----------------~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
..++...+-+..+|++ .++++++| +.+..|++|+.+..+...
T Consensus 26 ~~~~~a~i~are~gVl~G~~~~~~i~~~~~~~v~~~~~dG-~~v~~g~~i~~i~G~~~~ 83 (272)
T cd01573 26 EQPGKITFRARDPGVLCGTEEAARILELLGLEVDLAAASG-SRVAAGAVLLEAEGPAAA 83 (272)
T ss_pred CCEEEEEEEECCCEEEECHHHHHHHHHHHCCEEEEECCCC-CEECCCCEEEEEEECHHH
T ss_conf 9669999996799899779999999998498999994879-890799899999977899
No 128
>PRK09439 glucose-specific PTS system component; Provisional
Probab=82.80 E-value=1.3 Score=23.85 Aligned_cols=38 Identities=18% Similarity=0.005 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCEEEEEEECCCCCE---EECCCEEEEEECC
Q ss_conf 65312453687868999992488604---0358559999707
Q gi|254780674|r 43 DKAIMEFESVDEGIIDEILVPAGTEN---IAVNSPILNILMD 81 (423)
Q Consensus 43 DKa~~ev~S~~~G~l~~i~v~eG~e~---v~VG~~i~~i~~~ 81 (423)
+.-.++|-||.+|.+..+- +.-|++ =-.|+-++++-.+
T Consensus 17 ~~~~i~i~AP~~G~vi~L~-~V~D~vFa~k~mGdG~AI~P~~ 57 (169)
T PRK09439 17 DTGTIEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG 57 (169)
T ss_pred CCCCEEEEECCCCEEEEHH-HCCCHHHHCCCCCCEEEEECCC
T ss_conf 7884899964771698800-4977486057824748998679
No 129
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.60 E-value=1.4 Score=23.70 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 68999992488604035855999970754
Q gi|254780674|r 55 GIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 55 G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
|.-.++++++| +.+..|++|+.+..+..
T Consensus 64 ~~~~~~~~~dG-~~v~~g~~i~~i~G~a~ 91 (281)
T PRK06543 64 AITVELAVADG-ERFEAGDILATVTGSAR 91 (281)
T ss_pred CEEEEEEECCC-CCCCCCCEEEEEEECHH
T ss_conf 75999980899-88179989999973689
No 130
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=82.00 E-value=2.1 Score=22.39 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=31.2
Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 2453687868999992488604035855999970754
Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
+.|-+.++|+|.++++... +.|+-|++|+.|+...-
T Consensus 54 v~Iap~VsG~V~eV~V~dn-q~Vk~Gd~L~~iD~~~y 89 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDN-QLVKKGDVLFRIDPRDY 89 (352)
T ss_pred EEECCCCCEEEEEEEECCC-CEECCCCEEEEECCHHH
T ss_conf 9983767358999991689-88518976899895789
No 131
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=81.51 E-value=1.6 Score=23.24 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=27.2
Q ss_pred ECCCCEEEEECCCCCEE----------------EEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 52653124536878689----------------99992488604035855999970754
Q gi|254780674|r 41 ETDKAIMEFESVDEGII----------------DEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 41 ETDKa~~ev~S~~~G~l----------------~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
+..++...+-+..+|+| .+++++.| +.+..|++|+.+..+..
T Consensus 30 ~~~~~~~~~~ake~gVl~G~~~a~~if~~~~~~v~~~~~dG-~~v~~G~~i~~i~G~a~ 87 (284)
T PRK06096 30 GHQPGYIEFFLRQGGCVSGISVACKMLTTLGLTIDDAVSDG-SQANAGQRLIRAQGNAA 87 (284)
T ss_pred CCCEEEEEEEECCCEEEECHHHHHHHHHHCCCEEEEEECCC-CCCCCCCEEEEEEECHH
T ss_conf 99559999996799899779999999998099999991889-88279989999995689
No 132
>PRK09824 beta-glucoside-specific PTS system components IIABC; Provisional
Probab=81.50 E-value=2.2 Score=22.27 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=8.1
Q ss_pred CCCCEEEEECCCCCEEE
Q ss_conf 26531245368786899
Q gi|254780674|r 42 TDKAIMEFESVDEGIID 58 (423)
Q Consensus 42 TDKa~~ev~S~~~G~l~ 58 (423)
.+|++.|-=-.-+|++.
T Consensus 35 ~skvd~~~lk~i~gV~g 51 (625)
T PRK09824 35 ESKAQAEVLKKTPGIIM 51 (625)
T ss_pred CCCCCHHHHHCCCCCEE
T ss_conf 45118998957998128
No 133
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . ; GO: 0005351 sugar:hydrogen ion symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=81.47 E-value=1.1 Score=24.30 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=17.4
Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCC
Q ss_conf 999998168978527985999952653
Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKA 45 (423)
Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa 45 (423)
++=+-++++||+|++||+|+|+=.++.
T Consensus 88 EvF~~~v~~G~~V~~Gd~l~efD~~~i 114 (129)
T TIGR00830 88 EVFTSHVEEGDKVKKGDPLLEFDLPAI 114 (129)
T ss_pred EEEEEEEEECCEECCCCEEEEECHHHH
T ss_conf 124787643878717977999566999
No 134
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.30 E-value=1.9 Score=22.67 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=18.9
Q ss_pred CEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 68999992488604035855999970754
Q gi|254780674|r 55 GIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 55 G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
++-.++++++| +.+.-|++|+.+..+..
T Consensus 63 ~~~~~~~~~dG-~~v~~g~~i~~i~G~a~ 90 (277)
T PRK08072 63 RIEVELHKKDG-DLVEKGEIIATVQGPVA 90 (277)
T ss_pred CEEEEEECCCC-CEECCCCEEEEEEECHH
T ss_conf 65999982899-88169986899980699
No 135
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.86 E-value=1.7 Score=23.01 Aligned_cols=54 Identities=30% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEE
Q ss_conf 4554798999998766654310233461003772389851532142210131158871689844631235
Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKV 375 (423)
Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~ 375 (423)
-.|++++.++.+.++....+. . =+-+|| ++..|+..|.....+ ++++|+.....
T Consensus 214 ~LDnms~~~lk~av~~~~~~~-----~-iEaSGG-I~~~ni~~yA~tGvD---------~IS~galt~~a 267 (277)
T PRK05742 214 MLDELSLDDMREAVRLTAGRA-----K-LEASGG-INETTLRVIAETGVD---------YISIGAMTKDV 267 (277)
T ss_pred EECCCCHHHHHHHHHHHCCCE-----E-EEEECC-CCHHHHHHHHHCCCC---------EEECCHHHCCC
T ss_conf 986999999999999747974-----8-999889-999999999974999---------99888010699
No 136
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=80.60 E-value=1.6 Score=23.18 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 8689999924886040358559999707542
Q gi|254780674|r 54 EGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 54 ~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
+|.-.++++++| +.+.-|++|+.+......
T Consensus 55 ~~~~~~~~~~dG-~~v~~g~~i~~i~G~a~~ 84 (269)
T cd01568 55 DGIEVEWLVKDG-DRVEAGQVLLEVEGPARS 84 (269)
T ss_pred CCEEEEEECCCC-CCCCCCCEEEEEEECHHH
T ss_conf 981999987888-873799689999977899
No 137
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=80.39 E-value=1.7 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 868999992488604035855999970754
Q gi|254780674|r 54 EGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 54 ~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.|.-.+++++.| +.+..|++|+.+..+..
T Consensus 56 ~~~~~~~~~~dG-~~v~~g~~i~~i~G~a~ 84 (268)
T cd01572 56 PGIEVEWLVKDG-DRVEPGQVLATVEGPAR 84 (268)
T ss_pred CCCEEEEECCCC-CCCCCCCEEEEEEECHH
T ss_conf 986999985889-88079989999997589
No 138
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.25 E-value=2.1 Score=22.45 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=27.9
Q ss_pred CEEEEECCCCCEE------------------EEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 3124536878689------------------999924886040358559999707542
Q gi|254780674|r 45 AIMEFESVDEGII------------------DEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 45 a~~ev~S~~~G~l------------------~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
+...+-+..+|++ .++++++| +.+..|++|+.+..+...
T Consensus 40 ~~a~i~ake~gvl~G~~~~~~if~~~~~~i~~~~~~~dG-~~v~~g~~i~~i~G~a~~ 96 (285)
T PRK07428 40 GQAKWIAKEEGVIAGLPIAARVFQLLDPQVSFTPTVAEG-EACESGQVVAEIEGPLDA 96 (285)
T ss_pred EEEEEEECCCEEEECHHHHHHHHHHHCCCEEEEEECCCC-CEECCCCEEEEEEECHHH
T ss_conf 999999789989987999999999839956999884889-853489789999987899
No 139
>pfam02458 Transferase Transferase family. This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyses the first committed reaction of phytoalexin biosynthesis. Deacetylvindoline 4-O-acetyltransferase EC:2.3.1.107 catalyses the last step in vindoline biosynthesis is also a member of this family. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.
Probab=78.99 E-value=2.5 Score=21.87 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=10.0
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 322210111001100
Q gi|254780674|r 254 VNDIILKAFALAMIQ 268 (423)
Q Consensus 254 ~~~~l~kA~a~AL~~ 268 (423)
+++++=||+++|...
T Consensus 257 l~A~iW~~~~~a~~~ 271 (432)
T pfam02458 257 VTALLWRCATKARKL 271 (432)
T ss_pred EHHHHHHHHHHHCCC
T ss_conf 668899999985458
No 140
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=78.70 E-value=1.9 Score=22.76 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=8.2
Q ss_pred EEEEECCCCCEEEEE
Q ss_conf 124536878689999
Q gi|254780674|r 46 IMEFESVDEGIIDEI 60 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i 60 (423)
..++-||.+|.+..+
T Consensus 5 ~~~i~sP~~G~vv~L 19 (156)
T COG2190 5 KEEIYSPLSGEVVPL 19 (156)
T ss_pred CEEEECCCCCEEEEC
T ss_conf 379976477248881
No 141
>pfam06898 YqfD Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.
Probab=77.67 E-value=5.4 Score=19.68 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=21.0
Q ss_pred EEEEECCCCCEEEEEEECCCC------CEEECCCEEE
Q ss_conf 124536878689999924886------0403585599
Q gi|254780674|r 46 IMEFESVDEGIIDEILVPAGT------ENIAVNSPIL 76 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i~v~eG~------e~v~VG~~i~ 76 (423)
--++-|-.+|++.++++..|. |.|+-|+.+.
T Consensus 189 p~~iVA~k~GvI~~i~v~~G~p~Vk~GD~VkkGqiLV 225 (383)
T pfam06898 189 PRNIVAKKDGIITRMYVTKGTAVVKVGDVVKKGDILV 225 (383)
T ss_pred CCCEEECCCCEEEEEEECCCEEEECCCCEECCCCEEE
T ss_conf 8665899997999999647717765899877898999
No 142
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=77.52 E-value=5.5 Score=19.65 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=42.1
Q ss_pred ECCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 1689785279859999526531--24536878689999924886040358559999707542
Q gi|254780674|r 25 KQEGDKISPGDILCEIETDKAI--MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 25 ~k~GD~V~~gd~l~eVETDKa~--~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
+|+||.|..||.|=.|.-.-.. .=+|-+.+|....+.+.+| + ..|.++|+.+.++..+
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G-~-ytv~d~ia~v~~~~g~ 181 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEG-E-YTVEDVIATVSTEGGE 181 (588)
T ss_pred CCCCCEECCCCEEEEECCCCCEEEEEECCCCCCEEEEEEECCC-C-CEEEEEEEEEECCCCE
T ss_conf 6669875268548986067735799837887762899995588-7-1566799999527974
No 143
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=77.39 E-value=0.96 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=14.7
Q ss_pred EEEEECCCCCEEEEEEECCCCCE---EECCCEEEEE
Q ss_conf 12453687868999992488604---0358559999
Q gi|254780674|r 46 IMEFESVDEGIIDEILVPAGTEN---IAVNSPILNI 78 (423)
Q Consensus 46 ~~ev~S~~~G~l~~i~v~eG~e~---v~VG~~i~~i 78 (423)
..|+-||..|.+.- |-+.-||+ =.-|+-|+++
T Consensus 509 ~~~~~~P~~Ge~~~-L~eV~D~vFSsG~mG~G~Ai~ 543 (660)
T TIGR01995 509 KEELYAPVAGEVVP-LNEVPDEVFSSGAMGKGVAIL 543 (660)
T ss_pred HHHCCCCEEEEEEE-CCCCCCHHHHHHHCCCCEEEE
T ss_conf 33205760134675-056884123022306845897
No 144
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 protein; InterPro: IPR005695 Gram-negative bacteria have evolved transport complexes that export macromolecules and toxic substances such as heavy metals across the two membranes of the cell envelope in a single energy coupled step. The process requires (1) a cytoplasmic membrane export system, (2) a membrane fusion protein (MFP), and (3) an outer membrane factor. Phylogenetic analyses reveal that the MFPs cluster in accordance with the type of cytoplasmic membrane transport systems with which they function - proteins in this family are associated with reisistance to heavy metal poisoning. ; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport.
Probab=76.39 E-value=3.3 Score=21.16 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=23.3
Q ss_pred EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCC
Q ss_conf 245368786899999248860403585599997075
Q gi|254780674|r 47 MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDS 82 (423)
Q Consensus 47 ~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~ 82 (423)
.||-||++|+|.+..+..| |.+.-++.+..|...+
T Consensus 105 ~evrsP~~G~i~~k~v~~G-~~v~~~~~~f~~~~~~ 139 (284)
T TIGR00999 105 AEVRSPFDGYIVEKSVTLG-DYVAPQAELFRVADLG 139 (284)
T ss_pred HHHCCCCCCEEEEEEEECC-CCCCCCCCEEEEECCC
T ss_conf 2211886878999974117-2006897337776471
No 145
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.96 E-value=4 Score=20.58 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECC
Q ss_conf 455479899999876665431023346100377238985153214221013115887168984463123587789
Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNE 380 (423)
Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~ 380 (423)
-.|++++.++.+.++.+..+. .-|-+| .+++.|+-.|..+.-+ .+++|+......+.|=
T Consensus 222 lLDNms~~~i~~av~~i~~~~------~lEaSG-gI~~~ni~~yA~tGVD---------~IS~g~Lthsa~~lD~ 280 (290)
T PRK06559 222 MLDNMSLEQIEQAITLIAGRS------RIECSG-NIDMTTISRFRGLAID---------YVSSGSLTHSAKSLDF 280 (290)
T ss_pred EECCCCHHHHHHHHHHHCCCE------EEEEEC-CCCHHHHHHHHHCCCC---------EEECCHHCCCCCCCCC
T ss_conf 987989999999999857967------999978-9989999999973999---------9988822069964165
No 146
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=73.29 E-value=4.3 Score=20.34 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=7.5
Q ss_pred HHHHHHCCCCCCCCCCC
Q ss_conf 00110000000011234
Q gi|254780674|r 263 ALAMIQVPEANVSWTTN 279 (423)
Q Consensus 263 a~AL~~~P~~Na~~~~~ 279 (423)
.+|+.+|-.|=....++
T Consensus 304 GkA~ekF~~~v~aQGGd 320 (435)
T COG0213 304 GKALEKFKEIVAAQGGD 320 (435)
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 56999999999983899
No 147
>PRK10255 N-acetyl glucosamine specific PTS system components IIABC; Provisional
Probab=72.52 E-value=7.3 Score=18.82 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=8.9
Q ss_pred HHHHHHCCCCCCCCCC
Q ss_conf 0001101234433222
Q gi|254780674|r 135 IDLSSLSGSGPHGRIV 150 (423)
Q Consensus 135 iDl~~V~GTG~~GRIt 150 (423)
||-+.++.+|..|-+.
T Consensus 426 Vde~~lK~~GA~Gvv~ 441 (648)
T PRK10255 426 VNDAMCKRLGASGVVK 441 (648)
T ss_pred CCHHHHHHCCCCEEEE
T ss_conf 4899998669985999
No 148
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit; InterPro: IPR005726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents the alpha subunit from the A1 complex of A-ATPases. The A1 complex contains three copies each of subunits alpha (or A) and beta (or B) (IPR005724 from INTERPRO), both of which form the headpiece that participates in nucleotide binding. However, only the alpha subunit is catalytic, the beta subunit being regulatory in function . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0016021 integral to membrane, 0016469 proton-transporting two-sector ATPase complex.
Probab=71.82 E-value=7.6 Score=18.72 Aligned_cols=56 Identities=30% Similarity=0.414 Sum_probs=44.5
Q ss_pred EECCCCEECCCCEEEEEECCCCEEE---EECCCCC-EEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 8168978527985999952653124---5368786-8999992488604035855999970754
Q gi|254780674|r 24 IKQEGDKISPGDILCEIETDKAIME---FESVDEG-IIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVETDKa~~e---v~S~~~G-~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.+++||.|+.||.|=.|+-...... ||-...| .|.+|. +| + ..|.+.|+.+..++.
T Consensus 122 ~v~~Gd~V~~Gd~~G~V~ET~~i~h~ilvPp~~~gg~~~~~~--~G-~-ftV~d~i~~~~~~G~ 181 (584)
T TIGR01043 122 TVKEGDKVEGGDIIGVVQETSLIEHKILVPPNVEGGEIVEIA--EG-D-FTVEDTIAVVEKDGE 181 (584)
T ss_pred EECCCCEECCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEE--CC-C-EEEEEEEEEEECCCC
T ss_conf 122686434761587763765033477735745787577872--67-3-146556899822788
No 149
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT; InterPro: IPR014292 This bacteria-specific protein family includes a characterised, homodimeric, broad specificity acyltransferase from Acinetobacter sp. (strain ADP1). It has been shown to function as a wax ester synthase, acyl coenzyme A:diacylglycerol acyltransferase, and as a acyl-CoA:monoacylglycerol acyltransferase..
Probab=71.47 E-value=7.7 Score=18.66 Aligned_cols=150 Identities=20% Similarity=0.229 Sum_probs=82.0
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCC-CCCCCCEE-------C------CCCCCCE-----EEEECCCCCCEEEECCCCC
Q ss_conf 65543222101110011000000001-12344101-------2------5566541-----5651464202034145547
Q gi|254780674|r 250 NKISVNDIILKAFALAMIQVPEANVS-WTTNAMIR-------H------KHIDISV-----AVSIPGGIVTPIIRQADQK 310 (423)
Q Consensus 250 ~kit~~~~l~kA~a~AL~~~P~~Na~-~~~~~i~~-------~------~~vnIgi-----Av~~~~GL~vPvIk~ad~~ 310 (423)
...|+|+.++-+|+=||+.|=+=+.. ..++.++- . ..-.-|. -+.++-|.--||-|
T Consensus 280 ~g~TiNDVvLA~~~GALR~YL~~rg~~lp~~~L~A~VPvS~r~~~L~~~~~~~~gN~~s~~l~~L~t~~~DPv~R----- 354 (487)
T TIGR02946 280 FGVTINDVVLAAVAGALRRYLEERGEQLPDDPLIAMVPVSLRPEDLDDEDDSEGGNQVSAVLVNLPTGIADPVER----- 354 (487)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHCCCCCCCCCCCEEEEEECCCCCCCCCHHHH-----
T ss_conf 588457999999889999999984889889862466210046144066677666762788832267898678999-----
Q ss_pred CHHHHHHHHHHHHHHHCCCC----------------------CCCC----CCCCCEEEEECC-CCCC--------CCCCC
Q ss_conf 98999998766654310233----------------------4610----037723898515-3214--------22101
Q gi|254780674|r 311 SILDISLEVKQLAQRAKQRK----------------------LKPE----EYQGGTTSISNM-GMLG--------INSFC 355 (423)
Q Consensus 311 ~l~~i~~~~~~l~~~ar~~~----------------------l~~~----d~~ggtftiSNl-G~~g--------~~~~~ 355 (423)
|..|+....+..+..+.-. +... ++..=++.|||+ |.-. ++...
T Consensus 355 -L~~i~~~~~~~K~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~N~viSNVPGP~~plYl~G~~l~~~y 433 (487)
T TIGR02946 355 -LSAIHASMTRAKESGQAMGANQLLALSGLLPAPLLRLALRLLSRKALRERHPLFNLVISNVPGPREPLYLAGARLDELY 433 (487)
T ss_pred -HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEECCCCCCHHHHHCCCCHHHCC
T ss_conf -9999999997555411579889999998888999999988863020221576332677578898424565472012100
Q ss_pred C--CCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHHHHHHHCCHHH
Q ss_conf 3--1158871689844631235877893789548898985200114028899999999998719889
Q gi|254780674|r 356 A--VINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420 (423)
Q Consensus 356 p--ii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~~~~~le~P~~ 420 (423)
| ++..+|+ |+|.-.. -+|+ +.+++..|-+.+ .+-.++++.|.+-+|.-+.
T Consensus 434 p~~p~~~g~g--Lnit~~S-----y~g~------l~fG~~ad~~~v--~d~~~L~~~~~~a~~eL~~ 485 (487)
T TIGR02946 434 PLSPLLDGQG--LNITVTS-----YNGQ------LDFGLLADRDAV--PDPQELADALEAALEELEA 485 (487)
T ss_pred CCCCCCCCCC--EEEEEEE-----ECCE------EEEEEEECHHHH--HHHHHHHHHHHHHHHHHHH
T ss_conf 3433347761--2788987-----6677------999885066763--1399999999999999998
No 150
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=68.81 E-value=6.9 Score=18.97 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 8689999924886040358559999707542
Q gi|254780674|r 54 EGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 54 ~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
.+.+..+.+++| +.+..|++++.|......
T Consensus 48 ~~~~~~~~~~eG-~~v~~~~~il~i~G~~~~ 77 (281)
T cd00516 48 PGPLVILAVPEG-TVVEPGEPLLTIEGPARE 77 (281)
T ss_pred CCCEEEEECCCC-CEECCCCEEEEEEECHHH
T ss_conf 984799977999-992699889999983999
No 151
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=68.09 E-value=3.7 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.309 Sum_probs=24.9
Q ss_pred ECCCCEEEEECCCCCEEEEEEECCC------CCEEECCCEEEE
Q ss_conf 5265312453687868999992488------604035855999
Q gi|254780674|r 41 ETDKAIMEFESVDEGIIDEILVPAG------TENIAVNSPILN 77 (423)
Q Consensus 41 ETDKa~~ev~S~~~G~l~~i~v~eG------~e~v~VG~~i~~ 77 (423)
....=-.++=|--+|++.++++..| +|.|.-|+.|..
T Consensus 186 ~~~~ep~niVAkk~G~i~~~~v~~G~~~Vk~GD~VkkGd~Li~ 228 (406)
T TIGR02876 186 KKKAEPRNIVAKKDGVIKRVYVTSGEAVVKKGDVVKKGDLLIS 228 (406)
T ss_pred CCCCCCCCEEEECCEEEEEEEEECCEEEECCCCEECCCCEEEE
T ss_conf 8767772326633408888655111648548887657717871
No 152
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=65.05 E-value=4.5 Score=20.21 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 011110000011
Q gi|254780674|r 128 RLAGEHGIDLSS 139 (423)
Q Consensus 128 klA~e~giDl~~ 139 (423)
.+|...|+|...
T Consensus 128 sIA~r~G~d~r~ 139 (374)
T PRK10871 128 YIAWITGNDFRD 139 (374)
T ss_pred HHHHHHCCCHHH
T ss_conf 999998959999
No 153
>pfam00668 Condensation Condensation domain. This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non- ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pfam00550). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site.
Probab=62.71 E-value=11 Score=17.53 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=12.7
Q ss_pred EEEEEEECEEEHHHHHHHHHHHHHHHC
Q ss_conf 898520011402889999999999871
Q gi|254780674|r 390 ATLSADHRSVDGAIASKLLAKFKEYIE 416 (423)
Q Consensus 390 ltls~DHRvidGa~aa~Fl~~~~~~le 416 (423)
+.++++|=++||.-...|+++|.++.+
T Consensus 131 l~~~~hHii~Dg~S~~~l~~~l~~~Y~ 157 (300)
T pfam00668 131 LLFSIHHLIVDGWSWRILLEDLAALYA 157 (300)
T ss_pred EEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 999841064663149999999999970
No 154
>TIGR01720 NRPS-para261 non-ribosomal peptide synthase domain TIGR01720; InterPro: IPR010060 This entry represents a region of 171 amino acids long and contains three very highly conserved regions. At the N terminus is a nearly invariant lysine (position 11) followed by xxxRxxPxxGxGYG in which the proline and the first glycine are invariant. This is followed approximately 22 residues later by the motif FNYLG. Near the C terminus of the domain is the sequence TxSD where the serine and aspartate are nearly invariant. This domain appears to be located immediately downstream from a condensation domain (IPR001242 from INTERPRO), and is followed primarily by the end of the molecule or another condensation domain (or, in a few cases, it is followed by IPR000873 from INTERPRO, an AMP-binding module). The converse is not true, IPR001242 from INTERPRO domains are not always followed by this domain, which implicates this domain in possible post-condensation modification events. This region has so far been found in a variety of peptide synthases including Bacitracin synthetase 1 Gramicidin S synthetase 1 Linear gramicidin synthetase subunit A Surfactin synthetase subunit 1 Tyrocidine synthetase 1 .
Probab=62.64 E-value=11 Score=17.52 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=49.5
Q ss_pred CCCCC----CCCCC-CEEEEECCCCCCC--CCCCCCCCCCCEEEEEECCCEEEEEEECCEEEE---EE-EEEEEEEEEEC
Q ss_conf 33461----00377-2389851532142--210131158871689844631235877893789---54-88989852001
Q gi|254780674|r 329 RKLKP----EEYQG-GTTSISNMGMLGI--NSFCAVINPPQSTILAIGAGEKKVVFQNEEIKV---AT-IMNATLSADHR 397 (423)
Q Consensus 329 ~~l~~----~d~~g-gtftiSNlG~~g~--~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~---~~-~~~ltls~DHR 397 (423)
|++.. .++.. ..|..|.+....+ ....|-. |--.+|-| ++-+.- .+ .+.++|||--+
T Consensus 53 Gqfd~~~D~~~~~~~~~f~~s~~~~~~G~~~~~~~~~--~r~~~Lei----------nA~~~~~~dG~y~L~~~~~y~~~ 120 (171)
T TIGR01720 53 GQFDASADAEDSQSEELFQPSSLSGAPGDKEAISPES--PRPYALEI----------NAMIEDTADGEYELSLTWSYSRE 120 (171)
T ss_pred CCCCHHHCCCCCCCCCCEEECCCCCCCCCHHHCCCCC--CCCEEEEE----------EEEEEECCCCCEEEEEEEEECHH
T ss_conf 1036433243211210122123344345322268877--66726633----------46786579980688988864604
Q ss_pred EEEHHHHHHHHHHHHHHHCCH
Q ss_conf 140288999999999987198
Q gi|254780674|r 398 SVDGAIASKLLAKFKEYIENP 418 (423)
Q Consensus 398 vidGa~aa~Fl~~~~~~le~P 418 (423)
..+-.+.-+|.+.|++.|+.-
T Consensus 121 ~f~~~ti~~L~~~f~~~L~~~ 141 (171)
T TIGR01720 121 LFSEETIEQLADSFKEALEAI 141 (171)
T ss_pred HHCHHHHHHHHHHHHHHHHHH
T ss_conf 104689999999999999999
No 155
>pfam01333 Apocytochr_F_C Apocytochrome F, C-terminal. This is a sub-family of cytochrome C. See pfam00034.
Probab=56.13 E-value=7.3 Score=18.83 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=9.1
Q ss_pred EECCCCCEEEEEEECC
Q ss_conf 5368786899999248
Q gi|254780674|r 49 FESVDEGIIDEILVPA 64 (423)
Q Consensus 49 v~S~~~G~l~~i~v~e 64 (423)
+.|+.+|++.+|.-.+
T Consensus 5 ~~as~~G~I~~I~~~e 20 (118)
T pfam01333 5 YNASAAGTITKITRNE 20 (118)
T ss_pred EECCCCEEEEEEEECC
T ss_conf 7166770899977567
No 156
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=55.36 E-value=15 Score=16.71 Aligned_cols=57 Identities=25% Similarity=0.440 Sum_probs=39.4
Q ss_pred EECCCCEECCCCEEEEEE-CCCCE--EEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCC
Q ss_conf 816897852798599995-26531--2453687868999992488604035855999970754
Q gi|254780674|r 24 IKQEGDKISPGDILCEIE-TDKAI--MEFESVDEGIIDEILVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVE-TDKa~--~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.+++||.|..||.+-+|. |+... +=+|--..|.+.. .+++| ...+.++++.++.++.
T Consensus 54 ~v~~Gd~V~~GDi~G~V~E~~~i~HkImvpp~~~G~v~~-i~~~g--~y~v~~~~~~~~~~g~ 113 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTY-IAPAG--DYTVDDVILEVEFDGK 113 (369)
T ss_pred CCCCCCEECCCCEEEEEECCCCEEEEEECCCCCCEEEEE-EECCC--CCEEEEEEEEECCCCC
T ss_conf 267799962786799985578367778648987379999-91589--8524656999706898
No 157
>PRK02597 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=54.09 E-value=16 Score=16.58 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.4
Q ss_pred EEECCCCEECCCCEEEEEE-------CCCCEEEEECCCCCEE
Q ss_conf 9816897852798599995-------2653124536878689
Q gi|254780674|r 23 WIKQEGDKISPGDILCEIE-------TDKAIMEFESVDEGII 57 (423)
Q Consensus 23 Wl~k~GD~V~~gd~l~eVE-------TDKa~~ev~S~~~G~l 57 (423)
.|++.|+.|+.+|.|+||- ++|+.=+|-|..+|-+
T Consensus 410 L~V~n~q~V~~~qvIAEi~a~~~~~~~Ek~~K~I~sd~~GEv 451 (1295)
T PRK02597 410 LFVDDGQTVEADQTLAEIAAGAVKKSTEKATKDVICDLAGEV 451 (1295)
T ss_pred EEEECCCEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCEE
T ss_conf 999899698427389999537631112666322672577559
No 158
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=53.08 E-value=8 Score=18.53 Aligned_cols=51 Identities=18% Similarity=0.441 Sum_probs=36.4
Q ss_pred ECCCCCC--------EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCCCCCCCE
Q ss_conf 1464202--------034145547989999987666543102334610037723898515-32142210131158871
Q gi|254780674|r 295 IPGGIVT--------PIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNM-GMLGINSFCAVINPPQS 363 (423)
Q Consensus 295 ~~~GL~v--------PvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNl-G~~g~~~~~pii~~pq~ 363 (423)
|.|+|++ -|| ++|=.+.|-+.++..+---|.|.|++ +.||++ |..| ||+|+
T Consensus 86 TrD~Ll~RMk~edWd~Vi-~~NL~g~F~~t~~v~~~M~K~R~GrI---------INisSVVG~~G--------N~GQa 145 (238)
T TIGR01830 86 TRDNLLMRMKEEDWDAVI-NVNLKGVFNLTQAVLRPMIKQRSGRI---------INISSVVGLMG--------NAGQA 145 (238)
T ss_pred CCCCHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCE---------EEEEEHHHHHC--------CCCHH
T ss_conf 343010048855689999-86126687888998898875067434---------86100200006--------87426
No 159
>pfam01551 Peptidase_M23 Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins, for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.
Probab=52.05 E-value=12 Score=17.46 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=32.9
Q ss_pred EEEEEEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEEC
Q ss_conf 217999999816897852798599995265312453687868999992488604035855999970
Q gi|254780674|r 15 MTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNILM 80 (423)
Q Consensus 15 m~egtI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~ 80 (423)
+.+|+|+.+--..+ .--.+.|+.+.- +.+-+ +-|.++.+++| |.|.-|++|+.+..
T Consensus 19 ~~~G~V~~~~~~~~-----~G~~v~i~h~~g---~~~~Y-~hl~~~~V~~G-~~V~~G~~IG~~G~ 74 (96)
T pfam01551 19 AADGVVVFAGYLGG-----YGNLVIIDHGNG---YETLY-AHLSKILVKVG-QRVKAGQVIGTVGS 74 (96)
T ss_pred EECEEEEEEEECCC-----CCEEEEEEECCC---CEEEE-CCCEEEEECCC-CCHHHCCEEEEECC
T ss_conf 23679999898399-----885999993898---76998-36446779589-89013999998678
No 160
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=51.40 E-value=17 Score=16.30 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.1
Q ss_pred EEECCCCEECCCCEEEEEEC--------CCCEEEEECCCCCEEE
Q ss_conf 98168978527985999952--------6531245368786899
Q gi|254780674|r 23 WIKQEGDKISPGDILCEIET--------DKAIMEFESVDEGIID 58 (423)
Q Consensus 23 Wl~k~GD~V~~gd~l~eVET--------DKa~~ev~S~~~G~l~ 58 (423)
.+++.|+.|+.+|+|+|+-+ +|+.-+|-|..+|-+.
T Consensus 409 L~V~n~q~V~s~QvIAEi~~~~~~~~~~Ek~~K~i~S~~~GEv~ 452 (1350)
T CHL00117 409 LLVQNDQYVESEQVIAEIRAGTSTLKFKEKVRKHIYSDSEGEMH 452 (1350)
T ss_pred EEEECCCEEECCCEEEEEECCCCCCCCCEEEEEEEECCCCCCEE
T ss_conf 99989958751618999705777554530588777548864268
No 161
>pfam00767 Poty_coat Potyvirus coat protein.
Probab=48.44 E-value=12 Score=17.35 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC---CCCCCEECCCCCCCEEEEECCCCCCEEEE
Q ss_conf 046787775665554320146655432221011100110000000011---23441012556654156514642020341
Q gi|254780674|r 229 NLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSW---TTNAMIRHKHIDISVAVSIPGGIVTPIIR 305 (423)
Q Consensus 229 ~l~~~R~~l~~~~~~~~~~~~~kit~~~~l~kA~a~AL~~~P~~Na~~---~~~~i~~~~~vnIgiAv~~~~GL~vPvIk 305 (423)
.+..|.+..++..... +....+-++-|+++|+-..-. |.+|..| |+++.+.|. +-|.|.
T Consensus 60 Qf~~W~e~V~~~y~v~--d~~m~iilng~mVWCIeNGTS--p~i~g~W~Mmdg~eQveyP--------------l~P~ie 121 (237)
T pfam00767 60 QFNTWYEGVKEEYDVT--DEQMGIILNGLMVWCIENGTS--PNINGTWTMMDGEEQVEYP--------------LKPIVE 121 (237)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHEEEEECCCCC--CCCCCCEEEEECCCEEEEC--------------CCHHHH
T ss_conf 9999999999985989--999998853004544137888--7868766875088167861--------------622554
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 455479899999876665431
Q gi|254780674|r 306 QADQKSILDISLEVKQLAQRA 326 (423)
Q Consensus 306 ~ad~~~l~~i~~~~~~l~~~a 326 (423)
+| +-+|..|..++.++++.-
T Consensus 122 ~A-~PtlRqIM~HFSd~Aeay 141 (237)
T pfam00767 122 HA-KPTLRQIMAHFSDAAEAY 141 (237)
T ss_pred HC-CCCHHHHHHHHHHHHHHH
T ss_conf 25-844999999987999999
No 162
>TIGR02013 rpoB DNA-directed RNA polymerase, beta subunit; InterPro: IPR010243 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry describes orthologues of the beta subunit of bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=47.54 E-value=10 Score=17.80 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=15.9
Q ss_pred EECCCCEECCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 8168978527985999952653124536878689
Q gi|254780674|r 24 IKQEGDKISPGDILCEIETDKAIMEFESVDEGII 57 (423)
Q Consensus 24 l~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l 57 (423)
+|++||.|.+||+|+ |=||.+-|=|
T Consensus 853 iV~~GDrV~~GdvlA---------DGPsT~~GEL 877 (1449)
T TIGR02013 853 IVSVGDRVEAGDVLA---------DGPSTDLGEL 877 (1449)
T ss_pred ECCCCCEECCCCEEE---------CCCCCCCCCC
T ss_conf 501486810212773---------4766644320
No 163
>KOG2293 consensus
Probab=45.93 E-value=16 Score=16.46 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=37.6
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHH
Q ss_conf 7238985153214221013115887168984463123587789378954889898520011402889999999
Q gi|254780674|r 338 GGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAK 410 (423)
Q Consensus 338 ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~ 410 (423)
.|.|.|-|+|-+.+.--.--|+++|..||+ ++--++||.+ ++.| -+|--..++||+.
T Consensus 486 ~GsF~IkNlGK~~I~vng~~l~~gq~~~L~----------~nclveIrg~---~FiF---~~N~~~v~~~l~~ 542 (547)
T KOG2293 486 DGSFFIKNLGKRSILVNGGELDRGQKVILK----------NNCLVEIRGL---RFIF---EINQEAVGQYLKE 542 (547)
T ss_pred CCCEEECCCCCEEEEECCCCCCCCCEEEEC----------CCCEEEECCC---EEEE---EECHHHHHHHHHH
T ss_conf 785775147632488678134677558952----------6737997163---5888---4029999999974
No 164
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=42.75 E-value=23 Score=15.43 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.7
Q ss_pred EECCCCCEEECCCEEEEEECCCC
Q ss_conf 92488604035855999970754
Q gi|254780674|r 61 LVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 61 ~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.++|| +.+.-++||..|..+-.
T Consensus 57 a~~EG-~~v~p~epvl~I~Gp~~ 78 (302)
T cd01571 57 ALPEG-TIFNPKEPVLRIEGPYQ 78 (302)
T ss_pred ECCCC-CEECCCCCEEEEEECHH
T ss_conf 80898-88459985799997199
No 165
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase; InterPro: IPR012703 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. 2-Aminoethylphosphonate (AEP), the most common naturally occurring phosphonate, is an important precursor used in the biosynthesis of phosphonolipids, phosphonoproteins, and phosphonoglycans. This entry represents 2-aminoethylphosphonate-pyruvate transaminase (AEPT)(2.6.1.37 from EC) which catalyses the interconversion of AEP and phosphonoacetaldehyde (P-Ald), coupled with the interconversion of pryuvate and L-alanine. In some bacterial species this is the first step in an AEP degradation pathway which allows them to utilise this compound as a source of carbon, nitrogen and phosphorus. Phosphonoacetaldeyhde hydrolase, often encoded by an adjacent gene, then converts P-Ald to acetaldehyde and phosphate.Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lyase complex as found in Escherichia coli. The crystal structure of AEPT from Salmonella typhimurium has been studied to 2.2 A resolution . The protein is a homodimer where each subunit is composed of two domains, large and small. The large domain forms an alpha-beta complex characteristic of the aspartate transaminase family, while the small domain is comosed of highly twisted beta strands. The active site contains a pyridoxal 5'-phosphate cofactor and is found at the domain interface, being composed of residues from both subunits..
Probab=41.66 E-value=9.6 Score=18.01 Aligned_cols=96 Identities=14% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHCC---CCCCCC---C-CCCCEECCCCCCCEEEEECCCCCCEEEEC--CCCCCHHHHHHHHHH
Q ss_conf 55432221011100110000---000011---2-34410125566541565146420203414--554798999998766
Q gi|254780674|r 251 KISVNDIILKAFALAMIQVP---EANVSW---T-TNAMIRHKHIDISVAVSIPGGIVTPIIRQ--ADQKSILDISLEVKQ 321 (423)
Q Consensus 251 kit~~~~l~kA~a~AL~~~P---~~Na~~---~-~~~i~~~~~vnIgiAv~~~~GL~vPvIk~--ad~~~l~~i~~~~~~ 321 (423)
+.|--.-.++|+..||.++- -+.+++ . +.+....+=-.||+-.=+++-|-.|.|-. .=+-+=++++.-+++
T Consensus 241 RFTsPTHvV~Af~qAL~el~~EGGv~aR~~RY~~nq~~L~~~m~~LGF~~ll~~~~~sPIItsF~~P~~~~y~F~~fY~~ 320 (366)
T TIGR02326 241 RFTSPTHVVHAFAQALLELEKEGGVEARYQRYQSNQKLLVAGMRALGFEPLLDDELQSPIITSFYSPEDPDYRFADFYQR 320 (366)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 21772689999999999998458974578999999999999998615511475434588689850778897138999999
Q ss_pred HHHHHC---CCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 654310---23346100377238985153214
Q gi|254780674|r 322 LAQRAK---QRKLKPEEYQGGTTSISNMGMLG 350 (423)
Q Consensus 322 l~~~ar---~~~l~~~d~~ggtftiSNlG~~g 350 (423)
+.++.- -||++.-| ||=|-|+|..-
T Consensus 321 lk~~GFviYPGKvs~~~----~FRiG~IG~V~ 348 (366)
T TIGR02326 321 LKEQGFVIYPGKVSQVD----TFRIGNIGDVD 348 (366)
T ss_pred HHHCCCEECCCCCCCCC----CEECCCCCCCC
T ss_conf 97678176276104566----21116767638
No 166
>CHL00037 petA cytochrome f
Probab=41.24 E-value=17 Score=16.39 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=6.6
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 000110123443322
Q gi|254780674|r 135 IDLSSLSGSGPHGRI 149 (423)
Q Consensus 135 iDl~~V~GTG~~GRI 149 (423)
.++.||-|.|+.|-.
T Consensus 90 ~~~kQvlanG~kg~L 104 (320)
T CHL00037 90 MQLKQVLANGKKGGL 104 (320)
T ss_pred CCCEEECCCCCCCCC
T ss_conf 763033038851675
No 167
>CHL00006 consensus
Probab=38.93 E-value=27 Score=15.04 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=31.3
Q ss_pred EEEECCCCEECCCCEEEEEEC--------CCCEEEEECCCCCEEE
Q ss_conf 998168978527985999952--------6531245368786899
Q gi|254780674|r 22 KWIKQEGDKISPGDILCEIET--------DKAIMEFESVDEGIID 58 (423)
Q Consensus 22 ~Wl~k~GD~V~~gd~l~eVET--------DKa~~ev~S~~~G~l~ 58 (423)
=+||+.|+.|+.+|.|+||-+ +|+.=+|-|..+|-+.
T Consensus 405 lL~V~n~q~V~s~QvIAEi~a~~~~~~~kEk~~K~i~s~~~GE~~ 449 (1372)
T CHL00006 405 FLLVQNDQYVESEQVIAEIRAGTSTFNFKERVRKHIYSDSEGEMH 449 (1372)
T ss_pred EEEEECCCEEECCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf 899989958850528999825776666302587677527764121
No 168
>TIGR01730 RND_mfp efflux transporter, RND family, MFP subunit; InterPro: IPR006143 Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439 from INTERPRO) and a protein belonging to a family which includes the following members , , , , : Hemolysin secretion protein D from Escherichia coli. Lactococcin A secretion protein lcnD from Lactococcus lactis. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin) cyaD from Bordetella pertussis. Colicin Vsecretion protein cvaA from Escherichia coli. Proteases secretion protein prtE from Erwinia chrysanthemi. Alkaline protease secretion protein aprE from Pseudomonas aeruginosa. Multidrug resistance protein A from Escherichia coli. The secretion proteins are evolutionary related and consist of from 390 to 480 amino acid residues. They seem to be anchored in the inner membrane by a N-terminal transmembrane region. Their exact role in the secretion process is not yet known.; GO: 0008565 protein transporter activity, 0009306 protein secretion, 0016020 membrane.
Probab=38.58 E-value=23 Score=15.54 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.6
Q ss_pred CEEEEECCCCCEEEEEEECCCCCEEECCCEEEEEECCCCC
Q ss_conf 3124536878689999924886040358559999707542
Q gi|254780674|r 45 AIMEFESVDEGIIDEILVPAGTENIAVNSPILNILMDSTE 84 (423)
Q Consensus 45 a~~ev~S~~~G~l~~i~v~eG~e~v~VG~~i~~i~~~~~~ 84 (423)
...++.....|.+.++.+.+| +.++-|+.++.++.+...
T Consensus 25 ~~~~~~~~~~g~~~~~~~~~g-~~~~~g~~~~~~~~~~~~ 63 (333)
T TIGR01730 25 DEAELAPEVAGKLTKLLVREG-QKVKKGQLLARLDDDDYR 63 (333)
T ss_pred CHHHHHHHCCCEEEEEECCCC-CCCCCCCEEEEECCHHHH
T ss_conf 001001110440022110036-420136245765545788
No 169
>pfam11160 DUF2945 Protein of unknown function (DUF2945). This family of proteins has no known function.
Probab=37.84 E-value=28 Score=14.93 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=25.5
Q ss_pred CCEEEEEEEEEEECCCCE------ECCCCEEEEEECCCCE
Q ss_conf 872179999998168978------5279859999526531
Q gi|254780674|r 13 PTMTEGKLAKWIKQEGDK------ISPGDILCEIETDKAI 46 (423)
Q Consensus 13 e~m~egtI~~Wl~k~GD~------V~~gd~l~eVETDKa~ 46 (423)
-+.+.|+|++-+-++.+. -.++||=++||+||.-
T Consensus 10 ~g~~~G~V~~~~T~~~~~~G~~v~AS~ddPqYeV~SdkTG 49 (62)
T pfam11160 10 AGEVSGKIVKVHTEDTEYKGRTVRASEDDPQYEVESDKTG 49 (62)
T ss_pred CCEEEEEEEEEECCCCEECCEEEECCCCCCEEEEEECCCC
T ss_conf 9668689999983772888858767978984898856878
No 170
>pfam10011 DUF2254 Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.42 E-value=28 Score=14.89 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 999987666543102334610037723898515321422101311588716898446
Q gi|254780674|r 314 DISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGA 370 (423)
Q Consensus 314 ~i~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~ 370 (423)
+..+.+.+...-.+++ ...++-.|-+..|..++...--|=||-|-.||-.++.
T Consensus 251 ~~~~~l~~~~~ig~~R----t~~QD~~Fgl~~LvEIA~RALSPGINDP~TAi~~id~ 303 (369)
T pfam10011 251 EDREALRAAFTIGRER----TFEQDPRFGLRQLVEIALRALSPGINDPGTAIDVIDR 303 (369)
T ss_pred HHHHHHHHHEEECCCC----CHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 8999999884367565----8200942679999999998649988996079999999
No 171
>PRK10126 tyrosine phosphatase; Provisional
Probab=37.13 E-value=9.3 Score=18.09 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=25.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 22343221011110000011012344332221002444
Q gi|254780674|r 120 PIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETL 157 (423)
Q Consensus 120 ~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~ 157 (423)
..+.|.++..++++|+|++.- ..-+|+.+|++.|
T Consensus 43 ~~~d~~a~~~~~~~gid~~~h----~arqi~~~~~~~~ 76 (147)
T PRK10126 43 KGADPTAISVAAEHQLSLEGH----CARQISRRLCRNY 76 (147)
T ss_pred CCCCHHHHHHHHHCCCCCCCC----EEEECCHHHHHHC
T ss_conf 998999999999829996678----4410888786368
No 172
>PRK11649 hypothetical protein; Provisional
Probab=36.52 E-value=19 Score=16.00 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=21.1
Q ss_pred EEEEEEEEECEEEHHHHHHHHHHHHHHHCC
Q ss_conf 898985200114028899999999998719
Q gi|254780674|r 388 MNATLSADHRSVDGAIASKLLAKFKEYIEN 417 (423)
Q Consensus 388 ~~ltls~DHRvidGa~aa~Fl~~~~~~le~ 417 (423)
|.+.|- .-.-+.|.+-.+|++.+++++..
T Consensus 386 l~vklP-~~~~l~~~e~~~F~~~~~~~~~~ 414 (418)
T PRK11649 386 LTAKLP-RTEGLTGSDRREYLAQVKEVVPQ 414 (418)
T ss_pred CCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 534688-99978989999999999999997
No 173
>pfam05440 MtrB Tetrahydromethanopterin S-methyltransferase subunit B. The N5-methyltetrahydromethanopterin: coenzyme M (EC:2.1.1.86) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump.
Probab=35.99 E-value=26 Score=15.08 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=39.5
Q ss_pred CCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCCCCC
Q ss_conf 65415651464202034145547989999987666543102--3346100
Q gi|254780674|r 288 DISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQ--RKLKPEE 335 (423)
Q Consensus 288 nIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~--~~l~~~d 335 (423)
+++++.|...|++.+--++.-..|+..|.+++.+|-+-|.+ |.|+|.-
T Consensus 8 E~~Lv~D~~tG~V~~~~~d~i~~s~~pi~e~i~kLe~~addL~nsLdP~~ 57 (97)
T pfam05440 8 EINLVMDPETGVVAEEREDVIFLSMDPIFEQIDKLEAIADDLENSLDPST 57 (97)
T ss_pred CCCEEECCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 65846635534443056875898324899999999999999986459999
No 174
>KOG0975 consensus
Probab=33.94 E-value=32 Score=14.52 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=37.5
Q ss_pred CCEECCCCCCCEEEEECCCCCCE-----EEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 41012556654156514642020-----34145547989999987666543102334610037723
Q gi|254780674|r 280 AMIRHKHIDISVAVSIPGGIVTP-----IIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGT 340 (423)
Q Consensus 280 ~i~~~~~vnIgiAv~~~~GL~vP-----vIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggt 340 (423)
.|..-...||-+-..-.+-|++| ++.++-.+|+.+|+.++.+ -+..+++++.+|+.-+.
T Consensus 255 ~ItEv~tmNiF~v~~n~~elvTPp~dg~ILpGvTR~sileLa~~~g~--~~V~Er~vtv~e~~~A~ 318 (379)
T KOG0975 255 YITEVGTMNIFMVKKNEDELVTPPLDGTILPGVTRKSILELARDLGE--FKVEERDVTVDELKTAD 318 (379)
T ss_pred CEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCC--EEEEEEEEEHHHHHHHH
T ss_conf 54542531699997696047658877756677028999999997374--28999887499964357
No 175
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=33.45 E-value=33 Score=14.47 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHH
Q ss_conf 772389851532142210131158871689844631235877893789548898985200114028899999
Q gi|254780674|r 337 QGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLL 408 (423)
Q Consensus 337 ~ggtftiSNlG~~g~~~~~pii~~pq~aILgvG~~~~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl 408 (423)
|||.|++|..=. ..--|-++|| .+|.+ -+..|.--++.+||||+=--..|-+-|-|+.
T Consensus 745 SGGsF~vS~~P~---d~~~p~~~PP-------~kitD----L~A~~~~D~i~nLtWTAPg~~~D~G~a~rYI 802 (874)
T TIGR00868 745 SGGSFVVSGVPP---DGPHPDVFPP-------SKITD----LEAEFKEDKIINLTWTAPGDVLDKGKADRYI 802 (874)
T ss_pred CCCEEEECCCCC---CCCCCCCCCC-------CCEEE----CCCEEECCEEEEEEECCCCCCCCCCCEEEEE
T ss_conf 574077505858---8788654868-------60673----3331424555432201781003787303678
No 176
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=32.53 E-value=34 Score=14.38 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=27.8
Q ss_pred EEEEEEECCCCEECCCCEEEEEECCCCEEEEECCCCCEEE---------------------EEEECCCCCEEECCCEEEE
Q ss_conf 9999981689785279859999526531245368786899---------------------9992488604035855999
Q gi|254780674|r 19 KLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIID---------------------EILVPAGTENIAVNSPILN 77 (423)
Q Consensus 19 tI~~Wl~k~GD~V~~gd~l~eVETDKa~~ev~S~~~G~l~---------------------~i~v~eG~e~v~VG~~i~~ 77 (423)
++.+.-|..|++|.+|..|+ ++|.=-++-|...|+++ .|.|++| +.|.-|++|+.
T Consensus 1132 ~~~~~~V~~~Q~V~KG~~l~---~~~~Ge~~v~~~~G~~~~~~~~f~i~~ee~~~~V~~G~~i~V~~g-~~V~~G~~~ae 1207 (1552)
T TIGR02386 1132 EISELKVLDSQKVIKGENLV---VDKKGEEIVVSEEGRIKIEDKKFLIVEEEEVVPVKLGTKILVEDG-DAVKEGQRIAE 1207 (1552)
T ss_pred ECCEEEEECCCEEECCCEEE---ECCCCCEEEECCCCEEEEECCCEEEECCCEEEECCCCCEEEEECC-CCCCCCCEEEE
T ss_conf 00125640573553371367---658887677078887885058577640321564265668886158-62058875788
Q ss_pred EEC
Q ss_conf 970
Q gi|254780674|r 78 ILM 80 (423)
Q Consensus 78 i~~ 80 (423)
++.
T Consensus 1208 fDP 1210 (1552)
T TIGR02386 1208 FDP 1210 (1552)
T ss_pred ECC
T ss_conf 447
No 177
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=31.70 E-value=35 Score=14.29 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=9.4
Q ss_pred EEEEECCCCEEEEECCCCCE
Q ss_conf 99995265312453687868
Q gi|254780674|r 37 LCEIETDKAIMEFESVDEGI 56 (423)
Q Consensus 37 l~eVETDKa~~ev~S~~~G~ 56 (423)
+++++.|+|++.|--.-+|.
T Consensus 40 VI~i~gd~a~iQVyE~T~Gl 59 (585)
T PRK04192 40 IIRVRGDEASIQVYEETSGI 59 (585)
T ss_pred EEEEECCEEEEEECCCCCCC
T ss_conf 99994998999966688899
No 178
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=31.65 E-value=35 Score=14.28 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.6
Q ss_pred EECCCCCEEECCCEEEEEECCCC
Q ss_conf 92488604035855999970754
Q gi|254780674|r 61 LVPAGTENIAVNSPILNILMDST 83 (423)
Q Consensus 61 ~v~eG~e~v~VG~~i~~i~~~~~ 83 (423)
.++|| +.+.-++|+..|+..-.
T Consensus 82 al~EG-~~v~~~EPvl~I~G~~~ 103 (355)
T PRK07188 82 YLKDG-DIINPKEPVLEIEGPYE 103 (355)
T ss_pred EECCC-CEECCCCCEEEEEEEHH
T ss_conf 92798-77269984799996299
No 179
>KOG0287 consensus
Probab=30.47 E-value=35 Score=14.27 Aligned_cols=43 Identities=23% Similarity=0.195 Sum_probs=31.7
Q ss_pred CCCCCCHHHH--------HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 4554798999--------998766654310233461003772389851532
Q gi|254780674|r 306 QADQKSILDI--------SLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGM 348 (423)
Q Consensus 306 ~ad~~~l~~i--------~~~~~~l~~~ar~~~l~~~d~~ggtftiSNlG~ 348 (423)
|--.+++.+| .+++.+|+.+||.|--+..-|+-||.||||=|.
T Consensus 329 d~~~~~~~~i~~~w~k~~~~dFa~LI~~Ak~~~k~~~~~s~~tv~~tn~~d 379 (442)
T KOG0287 329 DQTEKEIDEIHSKWRKKHKSDFALLIDQAKKGYKKIAGMSQKTVTITNEDD 379 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 875036889999999999999999999998622444555556410046773
No 180
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=30.07 E-value=37 Score=14.11 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=38.0
Q ss_pred CCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--CCCCCCC
Q ss_conf 65415651464202034145547989999987666543102--3346100
Q gi|254780674|r 288 DISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQ--RKLKPEE 335 (423)
Q Consensus 288 nIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~--~~l~~~d 335 (423)
+++++.|...|++.+-=++.=..|+..+.+++++|-+-|.+ |.|+|.-
T Consensus 9 E~~Lv~D~~tG~Va~~~~dvi~~s~~PI~e~i~kLe~~addL~nsLdP~~ 58 (108)
T PRK00965 9 EIHLVMDPDTGVIAEMREDVIVVDMDPVEEEINKLEAIADDLENSLDPRN 58 (108)
T ss_pred CCCEEECCCCCEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 64745544313310035875998504789999999999999986459999
No 181
>PRK09213 purine operon repressor; Provisional
Probab=29.62 E-value=32 Score=14.51 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=3.6
Q ss_pred CCCCCCCCCCH
Q ss_conf 11000123210
Q gi|254780674|r 207 CRLQQSKQTIP 217 (423)
Q Consensus 207 ~~m~~S~~~iP 217 (423)
+++.++-+-.|
T Consensus 89 ~~L~~~~RiLP 99 (274)
T PRK09213 89 ERLSEPDRILP 99 (274)
T ss_pred HHHCCCCCCCC
T ss_conf 98468772766
No 182
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=28.24 E-value=17 Score=16.36 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHHC
Q ss_conf 4322101111000001101
Q gi|254780674|r 123 SPLARRLAGEHGIDLSSLS 141 (423)
Q Consensus 123 SP~aRklA~e~giDl~~V~ 141 (423)
-|.+|.||.++||+.++|.
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCCHHHHHHHHCCCHHHHH
T ss_conf 9759999998198988999
No 183
>pfam09222 Fim-adh_lectin Fimbrial adhesin F17-AG, lectin domain. Members of this family are carbohydrate-specific lectin domains found in bacterial fimbrial adhesins. They adopt a compact, elongated structure consisting of a beta-sandwich with two major sheets: one consisting of five long strands in mixed orientations, and a front sheet with four antiparallel strands, forming an immunoglobin-like fold.
Probab=27.20 E-value=41 Score=13.78 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCE----E---EEECCC-CCC-CCCCCCC
Q ss_conf 665415651464202034145547989999987666543102334610037723----8---985153-214-2210131
Q gi|254780674|r 287 IDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGT----T---SISNMG-MLG-INSFCAV 357 (423)
Q Consensus 287 vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~ggt----f---tiSNlG-~~g-~~~~~pi 357 (423)
|.=|+.|.+++-.-.||+-.-|-.+++++.+++--|.=-...+--.-..|+|-. | .+-|.= ..| ..+.-|+
T Consensus 47 isggfcvgldgkvdlpvvgsldgqsiyglteevglliwmgdtnysrgtamsgnswenvfsgwcvgnyvstqglsvhvrpv 126 (170)
T pfam09222 47 ISGGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLIWMGDTNYSRGTAMSGNSWENVFSGWCVGNYVSTQGLSVHVRPV 126 (170)
T ss_pred ECCCEEEECCCCCCCEEEECCCCCEEECCCHHHEEEEEECCCCCCCCCCCCCCCHHHHCCCEEECCEEECCCEEEEEEEE
T ss_conf 71750880067234405750178344141000008999556775542102577366621220453377046606888778
Q ss_pred CCCCC-EEE-----EEECCCEEEEEEECCEEEEEEEEEEEE
Q ss_conf 15887-168-----984463123587789378954889898
Q gi|254780674|r 358 INPPQ-STI-----LAIGAGEKKVVFQNEEIKVATIMNATL 392 (423)
Q Consensus 358 i~~pq-~aI-----LgvG~~~~~~~~~~~~i~~~~~~~ltl 392 (423)
|.... +|- -.+|.++.||...-..=.+...++++|
T Consensus 127 ilkrnssaqysvqktsigsirmrpyngssagsvqttvnfsl 167 (170)
T pfam09222 127 ILKRNSSAQYSVQKTSIGSIRMRPYNGSSAGSVQTTVNFSL 167 (170)
T ss_pred EEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEEE
T ss_conf 98517853066772011207862058986641688887620
No 184
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=25.76 E-value=36 Score=14.15 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=4.0
Q ss_pred CCCCCCCCCCCH
Q ss_conf 111000123210
Q gi|254780674|r 206 ACRLQQSKQTIP 217 (423)
Q Consensus 206 a~~m~~S~~~iP 217 (423)
++++.+|-+-+|
T Consensus 86 ~~~l~~s~Ri~P 97 (269)
T TIGR01743 86 CEKLSESERILP 97 (269)
T ss_pred HHHHCCCCCCCC
T ss_conf 986228884037
No 185
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=25.65 E-value=44 Score=13.60 Aligned_cols=21 Identities=29% Similarity=0.716 Sum_probs=10.1
Q ss_pred EEEEEEEECCCCEECCCCEEEEEEC
Q ss_conf 9999998168978527985999952
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIET 42 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVET 42 (423)
|-+..|-+-.+ .|-|=+.|.+
T Consensus 127 Gm~aD~aiHD~----~gNPHaHvm~ 147 (1102)
T PRK13826 127 GMVADWVYHDA----PGNPHVHLMT 147 (1102)
T ss_pred CCEEEEEEECC----CCCCEEEEEE
T ss_conf 95799985079----9896678851
No 186
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=25.44 E-value=21 Score=15.81 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 22343221011110000011012344332221002444
Q gi|254780674|r 120 PIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETL 157 (423)
Q Consensus 120 ~~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~ 157 (423)
..+.|.++.+++++|||++.- ..-+|+.+|++.+
T Consensus 43 ~~~d~~a~~~l~~~gid~~~h----~ar~i~~~~~~~~ 76 (144)
T PRK11391 43 HPADATAADVAANHGVSLEGH----AGRKLTAEMARNY 76 (144)
T ss_pred CCCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHC
T ss_conf 897999999999819993000----0224788798668
No 187
>KOG0095 consensus
Probab=25.44 E-value=44 Score=13.57 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=5.2
Q ss_pred HHHHHHCCCCC
Q ss_conf 66543102334
Q gi|254780674|r 321 QLAQRAKQRKL 331 (423)
Q Consensus 321 ~l~~~ar~~~l 331 (423)
+|...+|.+.+
T Consensus 167 rli~~ar~~d~ 177 (213)
T KOG0095 167 RLISEARQNDL 177 (213)
T ss_pred HHHHHHHHCCC
T ss_conf 99888875021
No 188
>KOG0100 consensus
Probab=25.34 E-value=43 Score=13.65 Aligned_cols=29 Identities=7% Similarity=0.184 Sum_probs=17.2
Q ss_pred EEEEEEEEEEECEEEHHHHHHHHHHHHHH
Q ss_conf 48898985200114028899999999998
Q gi|254780674|r 386 TIMNATLSADHRSVDGAIASKLLAKFKEY 414 (423)
Q Consensus 386 ~~~~ltls~DHRvidGa~aa~Fl~~~~~~ 414 (423)
+--.+|.+-||--+.--+.-|..+.--.+
T Consensus 527 ~~~kitItNd~~rLt~EdIerMv~eAekF 555 (663)
T KOG0100 527 KKEKITITNDKGRLTPEDIERMVNEAEKF 555 (663)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 74417886677877989999999989987
No 189
>CHL00018 rpoC1 RNA polymerase beta' subunit
Probab=25.32 E-value=45 Score=13.56 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCHHH-HHHHHHHCC----CCCCCCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 146655432221011-100110000----000011234410125566541565146420203414554798999998766
Q gi|254780674|r 247 EISNKISVNDIILKA-FALAMIQVP----EANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQ 321 (423)
Q Consensus 247 ~~~~kit~~~~l~kA-~a~AL~~~P----~~Na~~~~~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~ 321 (423)
..--++++.+|-.+- -.+|.+-|| .|||.||||+.-.| || +|. -|..=.+
T Consensus 456 PTLHrl~iqaf~p~l~~g~ai~lhplvc~~fNADFDGDqMavh----------------vp-------ls~--ea~~Ea~ 510 (668)
T CHL00018 456 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH----------------VP-------LSL--EAQAEAR 510 (668)
T ss_pred CCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCEEEEE----------------CC-------CCH--HHHHHHH
T ss_conf 5212132200025632783477244567876799888304651----------------68-------998--9999999
Q ss_pred HHHHHCCCCCCCC----------CCCCCEEEEE
Q ss_conf 6543102334610----------0377238985
Q gi|254780674|r 322 LAQRAKQRKLKPE----------EYQGGTTSIS 344 (423)
Q Consensus 322 l~~~ar~~~l~~~----------d~~ggtftiS 344 (423)
+.-.+..|-|+|. ||-=|.+++|
T Consensus 511 ~lm~s~~NilsPa~G~Pi~~psqdmvlg~yylt 543 (668)
T CHL00018 511 LLMFSHMNLLSPAIGDPISVPSQDMLLGLYVLT 543 (668)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 986440577778889971244422011433650
No 190
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase; InterPro: IPR004399 Phosphomethylpyrimidine kinase (2.7.4.7 from EC), also known as HMP-phosphate kinase, catalyses the phosphorylation of HMP-P to HMP-PP in the reaction: ATP + 4-amino-2-methyl-5-phosphomethylpyrimidine = ADP + 4-amino-2-methyl-5-diphosphomethylpyrimidine during the biosynthesis of thiamine.; GO: 0008972 phosphomethylpyrimidine kinase activity, 0009228 thiamin biosynthetic process.
Probab=24.58 E-value=3.8 Score=20.70 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHCCCC-CCCCC-------CCCCEECCCCCCCEEEEECCC-CC
Q ss_conf 78777566555432014665543--222101110011000000-00112-------344101255665415651464-20
Q gi|254780674|r 232 SLREQMNRTLQFHREEISNKISV--NDIILKAFALAMIQVPEA-NVSWT-------TNAMIRHKHIDISVAVSIPGG-IV 300 (423)
Q Consensus 232 ~~R~~l~~~~~~~~~~~~~kit~--~~~l~kA~a~AL~~~P~~-Na~~~-------~~~i~~~~~vnIgiAv~~~~G-L~ 300 (423)
..++|+...+.- -.-...|..| .+=++.||++.|++|+.- |.-+| |..+..-+.+..=.--=+|.. |+
T Consensus 54 ~V~aQl~aV~~D-~~~~a~KtGML~saeIve~Va~~l~~y~~~~~~VvDPVMVAksG~~Ll~~~a~~~l~~~LLP~A~~~ 132 (264)
T TIGR00097 54 FVEAQLDAVLSD-IKVDAVKTGMLASAEIVEAVAKKLREYDVQIPIVVDPVMVAKSGAALLEEEAVEALKKRLLPLATLV 132 (264)
T ss_pred HHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 999999998610-8965588624567077786677654048830389767216528754654789999999738711430
Q ss_pred CEEEECCCCCCH-HHHHHHHHHHHHHHCC-C-CCCCC--CCCCCEEE
Q ss_conf 203414554798-9999987666543102-3-34610--03772389
Q gi|254780674|r 301 TPIIRQADQKSI-LDISLEVKQLAQRAKQ-R-KLKPE--EYQGGTTS 342 (423)
Q Consensus 301 vPvIk~ad~~~l-~~i~~~~~~l~~~ar~-~-~l~~~--d~~ggtft 342 (423)
+|+|+.|+.|+= ..| +.-.++...||. . .|.+. =+.||-+.
T Consensus 133 TPN~pEAe~L~g~~~I-~~~~dm~~AAk~l~~~lG~~~vl~KGGHl~ 178 (264)
T TIGR00097 133 TPNLPEAEALLGATKI-RTEEDMIKAAKKLREELGPKAVLIKGGHLE 178 (264)
T ss_pred CCCHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 6897999998089665-898999999999988517880898277344
No 191
>PTZ00156 60S ribosomal protein L11; Provisional
Probab=23.78 E-value=48 Score=13.37 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=65.0
Q ss_pred CCCEECCCCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CEEEEECCCCCCCC---CC
Q ss_conf 441012556654156514642020341455479899999876665431023346100377-23898515321422---10
Q gi|254780674|r 279 NAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQG-GTTSISNMGMLGIN---SF 354 (423)
Q Consensus 279 ~~i~~~~~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~~l~~~d~~g-gtftiSNlG~~g~~---~~ 354 (423)
-.+-.++.-.||.-|-+ |+.. .+++-+.+ -++++.+|....+++ |+|+ ||+. .+
T Consensus 54 ~~F~iRkg~pIG~kVTL---------Rg~k---a~efL~r~----l~v~d~~L~~~~Fd~~GNfs------FGI~EhId~ 111 (172)
T PTZ00156 54 RSFGIRRNEKIAVHCTV---------RGKK---AEEILERG----LKVKEFELKKRNFSDTGNFG------FGIQEHIDL 111 (172)
T ss_pred HCCCCCCCCEEEEEEEE---------CHHH---HHHHHHHH----HHHCCCCCCCCCCCCCCCEE------ECCHHHEEC
T ss_conf 10476789857899997---------6688---99999998----84314673623528998514------152222357
Q ss_pred CCCCCCCCEEEEEECCCE--EEEEEECCEEEEEEEEEEEEEEEECEEEHHHHHHHHHH
Q ss_conf 131158871689844631--23587789378954889898520011402889999999
Q gi|254780674|r 355 CAVINPPQSTILAIGAGE--KKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAK 410 (423)
Q Consensus 355 ~pii~~pq~aILgvG~~~--~~~~~~~~~i~~~~~~~ltls~DHRvidGa~aa~Fl~~ 410 (423)
.+=..|..+|.|+.-.. .|| +-.+.-|+...-.+...||+ .--+|-.|++.
T Consensus 112 -G~kYDP~iGI~Gmdv~V~l~Rp---G~Rv~~Rk~~~~~i~~~hrv-tkeea~~~~~~ 164 (172)
T PTZ00156 112 -GIKYDPSTGIYGMDFYVVLSRP---GERVAHRKRRNSRVGKSHRV-TKEEAMKWFEQ 164 (172)
T ss_pred -CCEECCCCCEEEEEEEEEEECC---CCEEEEHHHHCCCCCCCCCC-CHHHHHHHHHH
T ss_conf -7421686777653689997158---74311011322558867701-89999999996
No 192
>pfam04275 P-mevalo_kinase Phosphomevalonate kinase. Phosphomevalonate kinase (EC:2.7.4.2) catalyses the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. This family represents the animal type of the enzyme. The other is the ERG8 type, found in plants and fungi, and some bacteria (see pfam00288).
Probab=23.77 E-value=17 Score=16.33 Aligned_cols=38 Identities=32% Similarity=0.542 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 23432210111100000110123443322210024443
Q gi|254780674|r 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLI 158 (423)
Q Consensus 121 ~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~ 158 (423)
+..|.-+.+|+++|+|+..+-+.|++----..|...--
T Consensus 30 IS~PiK~~yA~~~gLd~~~LL~d~~YKE~yR~dMI~Wg 67 (115)
T pfam04275 30 ISEPIKEEWAKKHGLDLEELLGDGPYKEKYRKDMIKWG 67 (115)
T ss_pred ECHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 08278999999919999998356215899999999988
No 193
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=23.53 E-value=24 Score=15.31 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 2343221011110000011012344332221002444
Q gi|254780674|r 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETL 157 (423)
Q Consensus 121 ~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~ 157 (423)
.+.|.+++.++++|||++.. .-+++.+|++.+
T Consensus 41 ~~~~~a~~~l~~~Gid~s~~-----sr~i~~~~~~~~ 72 (140)
T smart00226 41 GADPRAVEVLKEHGIALSHH-----ASQLTSSDFKNA 72 (140)
T ss_pred CCCHHHHHHHHHHCCCCCCC-----CCCCCHHHHHHC
T ss_conf 99989999999959882214-----354878787169
No 194
>TIGR00375 TIGR00375 conserved hypothetical protein TIGR00375; InterPro: IPR005287 This family of conserved hypothetical proteins has no known function. .
Probab=22.43 E-value=20 Score=15.88 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=29.4
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHHHHCCCCCCCC
Q ss_conf 0341455479899999-87666543102334610
Q gi|254780674|r 302 PIIRQADQKSILDISL-EVKQLAQRAKQRKLKPE 334 (423)
Q Consensus 302 PvIk~ad~~~l~~i~~-~~~~l~~~ar~~~l~~~ 334 (423)
-||.||+--+|..|.- .+..++.++|+|+|-.-
T Consensus 341 ~VL~~A~~edla~~~pPkvA~~i~~fR~Gkl~~~ 374 (384)
T TIGR00375 341 EVLLEAALEDLAKVDPPKVAALIEKFRKGKLIVK 374 (384)
T ss_pred HHHHCCCHHHHHCCCCCHHHHHHHHHHCCEEEEE
T ss_conf 6764278458733588358899998637617996
No 195
>TIGR02994 ectoine_eutE ectoine utilization protein EutE; InterPro: IPR014336 Members of this entry are part of the succinylglutamate desuccinylase / aspartoacylase family, and are found in the ectoine utilization operons: e.g. in Sinorhizobium meliloti 1021, where the operon is known to be induced by ectoine; Mesorhizobium loti, Silicibacter pomeroyi; Agrobacterium tumefaciens; and Pseudomonas putida..
Probab=21.82 E-value=45 Score=13.53 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHH---HHHHCCCCCCCCCCC
Q ss_conf 3221011110000---011012344332221
Q gi|254780674|r 124 PLARRLAGEHGID---LSSLSGSGPHGRIVK 151 (423)
Q Consensus 124 P~aRklA~e~giD---l~~V~GTG~~GRItk 151 (423)
|+-|.-.|..-|| ++.--+--++|.||.
T Consensus 92 Paf~~~~rtsPid~Gnlnr~fPG~~dG~vte 122 (325)
T TIGR02994 92 PAFRAGTRTSPIDRGNLNRSFPGRPDGTVTE 122 (325)
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 1010255667643355555688888861367
No 196
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=32 Score=14.51 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 221011110000011012344332221002444320
Q gi|254780674|r 125 LARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIST 160 (423)
Q Consensus 125 ~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~ 160 (423)
..+.-|++.|++...|+-+|+ .||++||+.|...
T Consensus 49 ~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~A 82 (130)
T COG3453 49 AIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQRA 82 (130)
T ss_pred HHHHHHHHCCCCEEEEECCCC--CCCHHHHHHHHHH
T ss_conf 999999966982587634799--8799999999999
No 197
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm.
Probab=20.97 E-value=37 Score=14.09 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 23432210111100000110123443322210024443200010001112211124444455546543456624655111
Q gi|254780674|r 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDN 200 (423)
Q Consensus 121 ~aSP~aRklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~ 200 (423)
+..|+--.+|++|++|+..+-|+|++.---+.|+..--...- ...++.+
T Consensus 33 ~S~P~K~~yA~~~~L~l~~LL~~~~YKE~yR~DMI~W~~E~R-------------------~~D~GyF------------ 81 (188)
T TIGR01223 33 LSEPLKEEYARKLQLDLDALLDDSTYKEKYRKDMIVWSDEKR-------------------AADYGYF------------ 81 (188)
T ss_pred CCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHCEECCCHHC-------------------CCCCCCE------------
T ss_conf 276035789887243168770888640322010001230000-------------------3689813------------
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 22110111000123210000012223320467877756
Q gi|254780674|r 201 IRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMN 238 (423)
Q Consensus 201 irk~ia~~m~~S~~~iPh~~~~~evd~t~l~~~R~~l~ 238 (423)
=|-.|.+.++ .+..|...++.-=..+.+..||+.+.
T Consensus 82 CRv~~~E~~S--rqq~P~~LVSD~RR~~DI~WFRE~YG 117 (188)
T TIGR01223 82 CRVKIVEALS--RQQTPIILVSDVRRKSDIRWFREAYG 117 (188)
T ss_pred EEEEEEECCC--CCCCCEEEEECCCCCCHHHHHHHCCC
T ss_conf 2000011001--36887588705521120123221058
No 198
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=20.56 E-value=30 Score=14.70 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC---
Q ss_conf 10111100000110123443322210024443200010001112211124444455546543456624655111221---
Q gi|254780674|r 127 RRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDSYEVIPHDNIRK--- 203 (423)
Q Consensus 127 RklA~e~giDl~~V~GTG~~GRItk~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~irk--- 203 (423)
..+|+..|-.|.-|.-+ ++|++--+|++..+..++..-+-+.... . .-.+.|+..|.|
T Consensus 131 Q~l~~r~GA~lk~~~l~-~~G~ld~~~l~~~~~~~TKlVa~~HvSN-----------V-------lGtvnP~~ei~~~AH 191 (409)
T TIGR01979 131 QLLAERTGATLKFIPLD-DDGTLDLDDLEELLTEKTKLVAITHVSN-----------V-------LGTVNPVEEIIKLAH 191 (409)
T ss_pred HHHHHHHCCEEEEEECC-CCCEEEHHHHHHHHHCCCEEEEEEEEEC-----------C-------CCCCCCHHHHHHHHH
T ss_conf 99997609878997448-8760518889988326982999974202-----------2-------030148789999986
Q ss_pred -CCCCCCCCCCCCCHHHCCCCCCCCCCHH-HHHHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHCCCCCC-----
Q ss_conf -1011100012321000001222332046-78777566555432--01466554322210111001100000000-----
Q gi|254780674|r 204 -TIACRLQQSKQTIPHFYVSIDCNIDNLL-SLREQMNRTLQFHR--EEISNKISVNDIILKAFALAMIQVPEANV----- 274 (423)
Q Consensus 204 -~ia~~m~~S~~~iPh~~~~~evd~t~l~-~~R~~l~~~~~~~~--~~~~~kit~~~~l~kA~a~AL~~~P~~Na----- 274 (423)
.=|.-+...-|.+|| ..||+.+|- +|.- |..|| -..| +. ++++=-.-|.+.|=|..
T Consensus 192 ~~GA~vlvDGAQ~~pH----~pvDv~~ldcDFyv-----FSGHKmyGPtG--iG----VLYGK~~lLe~MPPf~gGG~MI 256 (409)
T TIGR01979 192 QVGAKVLVDGAQAVPH----MPVDVQALDCDFYV-----FSGHKMYGPTG--IG----VLYGKEELLEEMPPFLGGGEMI 256 (409)
T ss_pred HCCCEEEEECCCCCCC----CCCCHHHHCCCEEE-----EECCHHHCCCC--CE----EEHHHHHHHHHCCCCCCCCCEE
T ss_conf 5797699862557589----89885655787445-----61004525766--30----1127889886477846698615
Q ss_pred -CCCCCC-CEECC--------CCCCCEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf -112344-10125--------56654156514642020341455479899999876665431023
Q gi|254780674|r 275 -SWTTNA-MIRHK--------HIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQR 329 (423)
Q Consensus 275 -~~~~~~-i~~~~--------~vnIgiAv~~~~GL~vPvIk~ad~~~l~~i~~~~~~l~~~ar~~ 329 (423)
.+..++ ..|.+ .=||+=+|++. --|.-.++..+..|.+..++|.+-|-++
T Consensus 257 ~~V~~~~g~ty~~~P~KFEAGTPniagviGLg-----aAidYl~~iG~~~I~~~E~~L~~yal~~ 316 (409)
T TIGR01979 257 EEVSLEEGTTYNEAPHKFEAGTPNIAGVIGLG-----AAIDYLEKIGLEKIEAHEKELTAYALER 316 (409)
T ss_pred EEEEECCCCEECCCCCCCCCCCCCHHHHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 78880577113678754568883589999999-----9999985238789999999999999999
No 199
>pfam08467 Luteo_P1-P2 Luteovirus RNA polymerase P1-P2/replicase. This domain is found in RNA-dependent RNA polymerase P1-P2 fusion/replicase proteins in plant Luteoviruses.
Probab=20.50 E-value=21 Score=15.73 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCCCEEEEECCCCCCEEEECCCCCCHHHH---HHH--------------HHHHHHHHCCCCC-CCCCCCCCEEE--EECC
Q ss_conf 66541565146420203414554798999---998--------------7666543102334-61003772389--8515
Q gi|254780674|r 287 IDISVAVSIPGGIVTPIIRQADQKSILDI---SLE--------------VKQLAQRAKQRKL-KPEEYQGGTTS--ISNM 346 (423)
Q Consensus 287 vnIgiAv~~~~GL~vPvIk~ad~~~l~~i---~~~--------------~~~l~~~ar~~~l-~~~d~~ggtft--iSNl 346 (423)
+-+.=.+..+.|+.-|+.|+++--.+.+. .+. |-+-.-|.++-+| +.+|++-+|++ +-|+
T Consensus 226 ~s~ceV~qVeTGe~~p~kk~~~GEe~~~~ePk~e~vRrik~e~~~~A~~~Ire~ir~kN~~Li~~devShATI~RYv~~f 305 (361)
T pfam08467 226 YSCCEVVQVETGETKPTKKNVNGEEVGEPEPKLKMVRRVKPECRAEARSYIRQHIRNNNMRLIDGDDVSHATINRYALKF 305 (361)
T ss_pred HHHHEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 75510377336665676235676717898717999986067666789999999984366501460056599999999997
Q ss_pred C
Q ss_conf 3
Q gi|254780674|r 347 G 347 (423)
Q Consensus 347 G 347 (423)
|
T Consensus 306 c 306 (361)
T pfam08467 306 C 306 (361)
T ss_pred H
T ss_conf 7
Done!