HHsearch alignment for GI: 254780674 and conserved domain: pfam05896
>pfam05896 NQRA Na(+)-translocating NADH-quinone reductase subunit A (NQRA). This family consists of several bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration.
Probab=96.56 E-value=0.0031 Score=41.35 Aligned_cols=44 Identities=34% Similarity=0.464 Sum_probs=35.5
Q ss_pred EEEEEEEECCCCEECCCCEEEEEECCCCE--EEEECCCCCEEEEEEECC
Q ss_conf 99999981689785279859999526531--245368786899999248
Q gi|254780674|r 18 GKLAKWIKQEGDKISPGDILCEIETDKAI--MEFESVDEGIIDEILVPA 64 (423)
Q Consensus 18 gtI~~Wl~k~GD~V~~gd~l~eVETDKa~--~ev~S~~~G~l~~i~v~e 64 (423)
T Consensus 38 glkPkl~VkeGD~Vk~G~pLF~---dK~np~i~f~SPvsG~V~~I~RG~ 83 (257)
T pfam05896 38 GMKPKMLVKEGDKVKAGQPLFE---DKKNPGVKFTAPASGTVVAINRGA 83 (257)
T ss_pred CCCEEEEEECCCEEECCCEEEE---EECCCCCEEECCCCEEEEEECCCC
T ss_conf 8732699834999855875799---736988468567873895010567