RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] (423 letters) >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Score = 367 bits (943), Expect = e-102 Identities = 116/435 (26%), Positives = 204/435 (46%), Gaps = 22/435 (5%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M +P + + EG++ KW + GD+++ D+LCE++ DKA++E S +G + EIL Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60 Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPP-----------LSKENIVEVREEHSHSSPVV 110 VP GT V ++ + E + E + + ++P Sbjct: 61 VPEGTV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAA 119 Query: 111 VREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTI 170 E R IA P R+ A E G+D+ + G+G +GR++K DI+ ++ + Sbjct: 120 EAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAE 179 Query: 171 QSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230 + + IR+ IA + SK T PH + + ++ L Sbjct: 180 EKAAPAAAKPATT----EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKL 235 Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSW--TTNAMIRHKHID 288 ++ R++ K++ ++KA A+ + P N S T +I+ + + Sbjct: 236 VAHRKKFKAIAAEKG----IKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291 Query: 289 ISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGM 348 I +A G++ P+I+ AD+K I ++ E+ +LA++A+ KL P E +G + +I+N+G Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGS 351 Query: 349 LGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLL 408 G F VIN P+ IL IG +K + ++ EI A ++ +LS DHR +DGA A K L Sbjct: 352 AGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKAL 411 Query: 409 AKFKEYIENPVWMLM 423 K + +P +LM Sbjct: 412 NHIKRLLSDPELLLM 426 >3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 Score = 221 bits (563), Expect = 3e-58 Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 3/230 (1%) Query: 189 AKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEI 248 + + IP + +RK IA + SKQ IPH ++ ++ + L+ R + + ++E Sbjct: 14 SAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDS---FKKEE 70 Query: 249 SNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQAD 308 ++ +KA A A+ + P+ N +W + +I H +I+IS+A++ + P+I+ AD Sbjct: 71 GYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNAD 130 Query: 309 QKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAI 368 +KSI I+ E+ +LA +A+ KL + +GGT ++++ G G +IN PQ+ IL + Sbjct: 131 EKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV 190 Query: 369 GAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENP 418 + K+ V ++ I V ++N LS DHR +DG +A K L K +E Sbjct: 191 ESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKI 240 >1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 layers); 2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 Score = 218 bits (557), Expect = 1e-57 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 194 EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKIS 253 + +P +RK +A RL ++K + + N+ ++ LR+Q + + ++ Sbjct: 5 KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG---EAFEKRHGIRLG 61 Query: 254 VNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSIL 313 +KA A+ + PE N S + ++ H + D+S+AVS P G+VTP++R D + Sbjct: 62 FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121 Query: 314 DISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEK 373 DI ++K+LA + + KL E+ GG +I+N G+ G +INPPQS IL + A + Sbjct: 122 DIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKD 181 Query: 374 KVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 + + N ++++ +M LS DHR +DG + L KE +E+P +L+ Sbjct: 182 RPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231 >3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 Score = 213 bits (543), Expect = 6e-56 Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 12/234 (5%) Query: 194 EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKIS 253 +V P + +A ++ S + IP S++ LL LR++ + +I+ Sbjct: 15 DVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV--------SAAPEIT 66 Query: 254 VNDIILKAFALAMIQVPEANVSWTT----NAMIRHKHIDISVAVSIPGGIVTPIIRQADQ 309 + L+ +A+ N +W + H+ + + + G++ P++ A Sbjct: 67 PFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQD 126 Query: 310 KSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIG 369 K+ +++ V +L A++ L P E +G T ++SN G LG++ VIN P++ IL +G Sbjct: 127 KNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLG 186 Query: 370 AGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 A + + V E+ M T DHR VDGA ++ + + ++ IE+P L+ Sbjct: 187 AIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALL 240 >1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* Length = 219 Score = 180 bits (457), Expect = 7e-46 Identities = 21/208 (10%), Positives = 52/208 (25%), Gaps = 19/208 (9%) Query: 212 SKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271 + ++ +I L ++ NK + A M PE Sbjct: 26 QSVAQCTYNQTVQLDITAFLKTVKK-------------NKHKFYPAFIHILARLMNAHPE 72 Query: 272 ANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQ-RAKQRK 330 ++ ++ + V + Q + Sbjct: 73 FRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLA 132 Query: 331 LKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNA 390 P+ + +S + SF + + + K ++ +M Sbjct: 133 YFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDK-----VLMPL 187 Query: 391 TLSADHRSVDGAIASKLLAKFKEYIENP 418 + H DG ++L + ++Y + Sbjct: 188 AIQVHHAVCDGFHVGRMLNELQQYCDEW 215 >3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 Score = 177 bits (450), Expect = 4e-45 Identities = 23/210 (10%), Positives = 60/210 (28%), Gaps = 20/210 (9%) Query: 212 SKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271 + F ++ +I L + + +++ A A+ Q E Sbjct: 21 RHRLPCGFSLTSKIDITTLKKSLDD-------------SAYKFYPVMIYLIAQAVNQFDE 67 Query: 272 ANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKL 331 ++ + +I +D V + I + + +R K Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTK 127 Query: 332 KPEEYQGG--TTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMN 389 + +IS + + +SF + I K + ++ Sbjct: 128 LFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQ-----QEGDRLLLP 182 Query: 390 ATLSADHRSVDGAIASKLLAKFKEYIENPV 419 ++ H DG ++ + + +E + + Sbjct: 183 LSVQVHHAVCDGFHVARFINRLQELCNSKL 212 >3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 Score = 169 bits (429), Expect = 1e-42 Identities = 116/234 (49%), Positives = 167/234 (71%), Gaps = 7/234 (2%) Query: 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNK 251 + IP NIR+ IA RL QSKQTIPH+Y+SID N+ +L +R+++N+ L+ +K Sbjct: 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-----SK 65 Query: 252 ISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKS 311 ISVND I+KA ALA ++VPEAN SW + ++ +D+SVAVS P G++TPI+ A K Sbjct: 66 ISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKG 125 Query: 312 ILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAG 371 + I+ +V LA +A++ KL+P E+QGGT +ISN+GM GI +F A+INPPQ+ ILAIGA Sbjct: 126 VETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGAS 185 Query: 372 EKKVVFQNEE--IKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 E K+V + E VA++M+ TLS DHR VDGA+ ++ LA+F++Y+E P+ ML+ Sbjct: 186 EDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 >2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} Length = 217 Score = 157 bits (397), Expect = 6e-39 Identities = 23/213 (10%), Positives = 53/213 (24%), Gaps = 26/213 (12%) Query: 212 SKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271 P ++ + + S L A A ++PE Sbjct: 23 RHFQNPQLSITSEVECGGARQRAKAA-------------GQSFFLHYLYAVLRAANEIPE 69 Query: 272 ANVSWTTNAMIR-HKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQ-- 328 + + + ID+ + I R E + + + Sbjct: 70 FRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDG 129 Query: 329 -----RKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIK 383 + + G +S L S + K + + + Sbjct: 130 DPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNA-GKAIIREGRL- 187 Query: 384 VATIMNATLSADHRSVDGAIASKLLAKFKEYIE 416 +M ++ H +DG S K +++++ Sbjct: 188 ---VMPIAMTIHHGFIDGHHLSLFYKKVEDFLK 217 >1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 Score = 154 bits (390), Expect = 3e-38 Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNK 251 E +P + + A L +S +PH +I E + E+ K Sbjct: 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITE----LEAFRVAQKAVAEKAGVK 69 Query: 252 ISVNDIILKAFALAMIQVPEANVSWTTN--AMIRHKHIDISVAVSIPGGIVTPIIRQADQ 309 ++V ++LKA A + ++P+ N S + A+IR K++ I AV P G++ P+IR DQ Sbjct: 70 LTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQ 129 Query: 310 KSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIG 369 KS+L ++ E +LA++A+ +KL + QG +IS++G +G +F ++N P+ IL + Sbjct: 130 KSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVS 189 Query: 370 AGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 + V+ + + ++ +LS D R ++GA A++ + + + + +L+ Sbjct: 190 KASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 >2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 Score = 143 bits (362), Expect = 5e-35 Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 8/234 (3%) Query: 193 YEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKI 252 P K + + + + IPHF + ++ L+ LRE++ K+ Sbjct: 31 DRTEPVKGFHKAMVKTMSAALK-IPHFGYCDEVDLTELVKLREELK----PIAFARGIKL 85 Query: 253 SVNDIILKAFALAMIQVPEANVSWTTNAMIRHK--HIDISVAVSIPGGIVTPIIRQADQK 310 S LKA +L ++Q P N S N +I +A+ G++ P ++ + Sbjct: 86 SFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIR 145 Query: 311 SILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGA 370 SI +I+ E+ +L + +L + GGT ++SN+G +G VI PP+ I A+G Sbjct: 146 SIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGT 205 Query: 371 GEKKVVFQ-NEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423 + F E+ A IMN + SADHR +DGA S+ +K Y+ENP +ML+ Sbjct: 206 IKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 259 >1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} Length = 229 Score = 120 bits (302), Expect = 4e-28 Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 9/169 (5%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 I MPSLSPTM EG + KW+K+EG+ +S GD LCEIETDKA++ ++ D+GI+ +I+V G Sbjct: 6 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 65 Query: 66 TENIAVNSPILNILMDSTEIPPSPP---------LSKENIVEVREEHSHSSPVVVREKHS 116 ++NI + S I I+ + + +SK + E S PV Sbjct: 66 SKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPG 125 Query: 117 KNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165 R SP AR + +H +D S + +GP G K D L+ K K Sbjct: 126 TLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGK 174 >1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 Score = 95.4 bits (237), Expect = 2e-20 Identities = 36/97 (37%), Positives = 61/97 (62%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 + +P+LSPTMT G + +W K+ G+K+S GD+L EIETDKA + FE +EG + +ILVP G Sbjct: 30 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 89 Query: 66 TENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREE 102 T ++ + +P+ I+ +I + +++ + Sbjct: 90 TRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQ 126 >3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 Score = 89.1 bits (221), Expect = 2e-18 Identities = 35/80 (43%), Positives = 55/80 (68%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 + +P+LSPTMT G + +W K+ G+K+S GD+L EIETD A + FE +EG + +ILVP G Sbjct: 8 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEG 67 Query: 66 TENIAVNSPILNILMDSTEI 85 T ++ + +P+ I+ +I Sbjct: 68 TRDVPLGTPLCIIVEKEADI 87 >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 Score = 88.4 bits (219), Expect = 3e-18 Identities = 35/94 (37%), Positives = 57/94 (60%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60 + +PSLSPTM G +A+W K+EGDKI+ GD++ E+ETDKA + FES++E + +I Sbjct: 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKI 64 Query: 61 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKE 94 LV GT ++ + + I + +I + + Sbjct: 65 LVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLD 98 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 Score = 85.6 bits (212), Expect = 2e-17 Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 + + + + E + +W +EGD +S D +CE+++DKA + S +G+I ++ Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62 Query: 62 VPAGTENIAVNSPILNILMDSTE 84 + V P+++I ++ + Sbjct: 63 YNLD-DIAYVGKPLVDIETEALK 84 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Score = 85.5 bits (212), Expect = 2e-17 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 I +P L ++ + +A W K+ GD + ++L EIETDK ++E + +GI+D +L G Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64 Query: 66 TENIAVNSPILNI 78 + + + Sbjct: 65 -TTVTSRQILGRL 76 Score = 30.4 bits (69), Expect = 0.83 Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 13 PTMTEGKLAKWIKQEGDKISPGDILCEIE 41 P +G L ++ EG ++ IL + Sbjct: 49 PASADGILDAVLEDEGTTVTSRQILGRLR 77 >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Score = 83.8 bits (207), Expect = 7e-17 Identities = 39/85 (45%), Positives = 58/85 (68%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 I MPSLSPTM EG + KW+K+EG+ +S GD LCEIETDKA++ ++ D+GI+ +I+V G Sbjct: 10 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69 Query: 66 TENIAVNSPILNILMDSTEIPPSPP 90 ++NI + S I I+ + + Sbjct: 70 SKNIRLGSLIGLIVEEGEDWKHVSG 94 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 Score = 77.1 bits (190), Expect = 7e-15 Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 I P+ ++ +G +A W K+ G+ + +++ +IETDK +ME + +G+I EI+ G Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63 Query: 66 TENIAVNSPILNI 78 + + + + Sbjct: 64 -DTVLSGELLGKL 75 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Score = 72.1 bits (177), Expect = 2e-13 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M+ + +P + E ++ + + + GDK++ L +E DKA ME + G++ E+ Sbjct: 1 MVKEVNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58 Query: 62 VPAGTENIAVNSPILNI 78 V G + + S I+ Sbjct: 59 VNVG-DKVKTGSLIMIF 74 Score = 29.7 bits (67), Expect = 1.2 Identities = 8/45 (17%), Positives = 16/45 (35%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKA 45 + + P G + + GDK+ G ++ E + A Sbjct: 35 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79 >1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; subunit binding domain; NMR {Homo sapiens} Length = 58 Score = 70.8 bits (174), Expect = 6e-13 Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKT 162 + +A+P RRLA E+ I LS + GSG GRI+K DI + +T Sbjct: 4 KGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQT 50 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 Score = 68.6 bits (168), Expect = 2e-12 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64 I +P + +G++ + + + GD I L +E+ KA ME S G++ + V Sbjct: 3 IIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59 Query: 65 GTENIAVNSPILNI 78 G + + I+ + Sbjct: 60 G-DKLKEGDAIIEL 72 Score = 30.5 bits (69), Expect = 0.71 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 17 EGKLAKWIKQEGDKISPGDILCEIETDKA 45 G + + GDK+ GD + E+E Sbjct: 49 AGVVKSVSVKLGDKLKEGDAIIELEPAAG 77 >2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70 Score = 67.5 bits (165), Expect = 5e-12 Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 106 SSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165 SS ++ + +A+P RRLA E+ I LS + GSG GRI+K DI + +T Sbjct: 2 SSGSSGHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAI 61 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 Score = 67.0 bits (164), Expect = 7e-12 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 8 MPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTE 67 P++ + + GKL ++ ++G + G E+E K IM + G + + + G Sbjct: 4 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPG-A 61 Query: 68 NIAVNSPILNILMDSTE 84 + + + +D E Sbjct: 62 VLEAGCVVARLELDDLE 78 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 Score = 66.7 bits (163), Expect = 9e-12 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65 + +P + + GD I+ D L +ETDKA M+ + G++ E+ V G Sbjct: 5 LKVPDI-GGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVG 63 Query: 66 TENIAVNSPILNILMDST 83 + I+ I+ + + T Sbjct: 64 -DKISEGGLIVVVEAEGT 80 >1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49 Score = 66.5 bits (163), Expect = 1e-11 Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159 R IA P R+ A E G+D+ + G+G +GR++K DI+ ++ Sbjct: 3 PNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 >1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62 Score = 64.0 bits (156), Expect = 7e-11 Identities = 19/48 (39%), Positives = 23/48 (47%) Query: 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165 A P ARRLA E GIDLS + G+GP G I D++ Sbjct: 3 REVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKAT 50 >1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2btg_A 2bth_A 2cyu_A Length = 51 Score = 62.7 bits (153), Expect = 2e-10 Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159 +N SP RRL EH +D S++ G+G GR+ + D+E ++ Sbjct: 6 EQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49 >2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64 Score = 61.8 bits (150), Expect = 2e-10 Identities = 16/50 (32%), Positives = 22/50 (44%) Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165 R SP AR + +H +D S + +GP G K D L+ K K Sbjct: 6 GTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGK 55 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 61.1 bits (148), Expect = 4e-10 Identities = 86/503 (17%), Positives = 157/503 (31%), Gaps = 198/503 (39%) Query: 3 IHTI--TMPSLSPTMTEGKLAKWIK----------QEGDKISPGDILCEIETDKA-IME- 48 IH + + + T T K + IK + DK S + + A ++ Sbjct: 101 IHALAAKLLQENDT-TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159 Query: 49 F-------ESVDE---------GIIDEILVPAGT--ENIAVNSP-----------ILNIL 79 F + +E ++ +++ + + + IL L Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219 Query: 80 MDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPI--ASPLAR-----RLAGE 132 + + P L S P+ P+ LA +L G Sbjct: 220 ENPSNTPDKDYLL-------------SIPISC--------PLIGVIQLAHYVVTAKLLGF 258 Query: 133 H-GIDLSSLSGSGPH--GRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILN--- 186 G S L G+ H G +V + I+ S+ ES ++ Sbjct: 259 TPGELRSYLKGATGHSQG-LVTA---VAIAETD---------SW----ESFFVSVRKAIT 301 Query: 187 -LF--AKDSYEVIPHDNIRKTIACRLQQSK---QTIPHFYVSI-DCNIDNLLSLREQMNR 239 LF YE P+ ++ +I L+ S + +P +SI + + + + N Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSI---LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358 Query: 240 TLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGG- 298 L P K ++IS+ + G Sbjct: 359 HL----------------------------PA------------GKQVEISL---VNGAK 375 Query: 299 --IVT-PIIRQADQKSI--LDISL-EVK---QLAQ-RA--KQRKLKPEEYQGGTTSISNM 346 +V+ P +S+ L+++L + K L Q R +RKLK S Sbjct: 376 NLVVSGP------PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK----------FS-- 417 Query: 347 GMLGINSFCAVINPPQSTILAIGAGE--------KKVVFQNEEIKVATIMNATLSADHRS 398 N F V +P S +L A + V F ++I++ + + +D R Sbjct: 418 -----NRFLPVASPFHSHLLV-PASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRV 470 Query: 399 VDGAIASKLLAKFKEYIENPV-W 420 + G+I+ ++ I PV W Sbjct: 471 LSGSISERI---VDCIIRLPVKW 490 Score = 49.9 bits (119), Expect = 1e-06 Identities = 73/499 (14%), Positives = 137/499 (27%), Gaps = 219/499 (43%) Query: 82 STEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASP---LARRLAGEHGIDLS 138 +P + S +++E+ + P + + P +P + + L + L Sbjct: 19 VLLVPTA---SFFIASQLQEQFNKILPEPTEGFAADDEP-TTPAELVGKFL--GYVSSLV 72 Query: 139 SLSGSGPHGRIVK-------------SDIETLIST------KTNVKDYSTIQSF----GL 175 S G +++ +DI L + T VK I+++ + Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132 Query: 176 VDESI---------------DANILNLF----AKDSY--EVIPHDNIRKTIACRLQQSKQ 214 +A ++ +F D Y E L+ Q Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--------------LRDLYQ 178 Query: 215 TIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANV 274 T + +L+ TL E I + + + + + Sbjct: 179 TYHVL-------VGDLIK---FSAETLS---ELIRTTLDAEKVFTQGLNI---------L 216 Query: 275 SWTTNAMIRHKH----ID--ISVAVS---I------------------PG---------- 297 W + + D +S+ +S I PG Sbjct: 217 EW-----LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271 Query: 298 ----GIVTPI-IRQADQ-KSILDISLE-VKQL------AQRAKQRK-LKPEEYQGGTTSI 343 G+VT + I + D +S + + L A L P + S+ Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE---DSL 328 Query: 344 SNMG------MLGI---------------NS--------FCAVIN---------PPQS-- 363 N ML I NS +++N PPQS Sbjct: 329 EN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387 Query: 364 ---TIL-AIGAG-----------EKKVVFQNEEIKVAT------IMNAT--LSADHRSVD 400 L A E+K+ F N + VA+ ++ A+ ++ D + Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447 Query: 401 GAIASKLLAKFKEYIENPV 419 + +K + I PV Sbjct: 448 VSFNAKDIQ-----I--PV 459 Score = 41.9 bits (98), Expect = 3e-04 Identities = 48/260 (18%), Positives = 76/260 (29%), Gaps = 111/260 (42%) Query: 78 ILMDST---EIPPSPPLSKENIVEVREEHSHSSPVVVREKH--SKNRPIASPLARRLAGE 132 IL DS E PSP LS + + + V + + N + P +++ Sbjct: 323 ILEDSLENNEGVPSPMLS------IS---NLTQEQV--QDYVNKTNSHL--PAGKQVE-- 367 Query: 133 HGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDS 192 I SL +G +V ++L +GL L L Sbjct: 368 --I---SLV-NGAKNLVVSGPPQSL---------------YGLN--------LTL----- 393 Query: 193 YEVIPHDNIRKTIACR-LQQSKQTIPHFYVSIDCNIDNLLSLR--EQMNRTLQ----FH- 244 RK A L QS+ IP S R + NR L FH Sbjct: 394 ---------RKAKAPSGLDQSR--IPF-------------SERKLKFSNRFLPVASPFHS 429 Query: 245 ------REEISNKISVNDIILKAFALAM----------IQVPEANVSWTTNAMIRHKHID 288 + I+ + N++ A + + ++V ++S I + Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489 Query: 289 ISVAVS-----I----PGGI 299 I PGG Sbjct: 490 WETTTQFKATHILDFGPGGA 509 >2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus HB8} Length = 41 Score = 61.0 bits (149), Expect = 5e-10 Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIE 155 +A P AR+LA E GI + + GSGP GR+ D+ Sbjct: 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVR 36 >2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus HB8} Length = 40 Score = 60.7 bits (148), Expect = 5e-10 Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 122 ASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIE 155 A+P RRLA E G+DL+ L G+G GRI + D+ Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVR 35 >2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase, structural genomics, NPPSFA; HET: FAD NAD; 1.80A {Thermus thermophilus HB8} Length = 40 Score = 60.0 bits (146), Expect = 1e-09 Identities = 14/38 (36%), Positives = 22/38 (57%) Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLI 158 +A P A RL E G+ + + G+G GRI+K D+ + Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Score = 59.6 bits (144), Expect = 1e-09 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 + P++ + + GKL ++ ++G + G E+E K IM + G + I Sbjct: 10 VFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK 69 Query: 62 VPAGTENIAVNSPILNI-LMDSTEIPPSPPLS 92 P + + + L D +++ PS P S Sbjct: 70 RP--GAVLEAGCVVARLELDDPSKVHPSGPSS 99 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 Score = 55.7 bits (134), Expect = 2e-08 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61 M+ + +P + ++ + + + GDK++ L +E DKA ME + G++ E+ Sbjct: 1 MVKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 54 Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPPLSKE 94 V G + + S I+ ++ P + P +E Sbjct: 55 VNVG-DKVKTGSLIMIFEVEG-AAPAAAPAKQE 85 Score = 29.5 bits (66), Expect = 1.5 Identities = 8/45 (17%), Positives = 16/45 (35%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKA 45 + + P G + + GDK+ G ++ E + A Sbjct: 31 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 75 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, polymorphism, disease mutation, nucleotide-binding; HET: PG4; 1.5A {Homo sapiens} Length = 94 Score = 54.6 bits (131), Expect = 4e-08 Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 5/82 (6%) Query: 1 MMIHTITMPSLSPTMTE----GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGI 56 + + S++ ++ G + + GD ++ G +C IE K + G Sbjct: 13 LGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGT 72 Query: 57 IDEILVPAGTENIAVNSPILNI 78 + + AG + + ++ + Sbjct: 73 VKSVHCQAG-DTVGEGDLLVEL 93 Score = 30.7 bits (69), Expect = 0.60 Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIE 41 +I + M + G + Q GD + GD+L E+E Sbjct: 54 CVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74 Score = 53.6 bits (129), Expect = 8e-08 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77 GK+ + + + GD++ G L +E K E S +G++ ILV G E + P++ Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEG-EAVDTGQPLIE 72 Query: 78 I 78 + Sbjct: 73 L 73 Score = 28.6 bits (64), Expect = 3.1 Identities = 8/40 (20%), Positives = 22/40 (55%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEI 40 +++ + M + P+ +G + + + +EG+ + G L E+ Sbjct: 34 LVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77 Score = 51.4 bits (123), Expect = 4e-07 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77 G ++K + +EGD + G + +E K E + +G ++++LV + + ++ Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER-DAVQGGQGLIK 75 Query: 78 I 78 I Sbjct: 76 I 76 Score = 27.5 bits (61), Expect = 5.7 Identities = 10/40 (25%), Positives = 21/40 (52%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEI 40 +++ + M + T+GK+ K + +E D + G L +I Sbjct: 37 LVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72 Score = 51.1 bits (122), Expect = 5e-07 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77 G L K + GD+I G + +E+ K + + GI+ E+ G + + +L Sbjct: 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEG-DFVNEGDVLL- 65 Query: 78 ILMDSTE 84 L +ST+ Sbjct: 66 ELSNSTQ 72 Score = 29.9 bits (67), Expect = 1.1 Identities = 10/43 (23%), Positives = 21/43 (48%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETD 43 ++ ++ M G + + K+EGD ++ GD+L E+ Sbjct: 28 AILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99 Score = 48.4 bits (115), Expect = 3e-06 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77 G + K + GDK+ GD L + K +S +G + ++ G ++P++ Sbjct: 23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG-AQANRHTPLVE 81 Query: 78 ILMDSTEIPPSPPLSKE 94 + ++ S Sbjct: 82 FEEEESDKRESESGPSS 98 Score = 28.8 bits (64), Expect = 2.6 Identities = 9/45 (20%), Positives = 21/45 (46%) Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKA 45 M++ + M + +G + K +EG + + L E E +++ Sbjct: 43 MVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Length = 80 Score = 37.2 bits (86), Expect = 0.008 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 21 AKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78 AK + G K++ GD LC +E K + + E+ G + ILV +G + + + P++ I Sbjct: 23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG-QPVEFDEPLVVI 79 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Length = 1165 Score = 36.2 bits (83), Expect = 0.015 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFE---SVDEGIIDEILVPAG 65 G +++ G ++ GD+L IE K ME D G I E+LV AG Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMK--METAIHAEKD-GTIAEVLVKAG 1151 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 Score = 35.8 bits (82), Expect = 0.018 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFE---SVDEGIIDEILVPAGTENIAVNSP 74 G + + G+ + L E K ME D G+I ++ V G + IA Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMK--METTIQAPFD-GVIKQVTVNNG-DTIATGDL 1141 Query: 75 ILNI 78 ++ I Sbjct: 1142 LIEI 1145 Score = 27.3 bits (60), Expect = 6.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 18 GKLAKWIKQEGDKISPGDILCEIE 41 G + + GD I+ GD+L EIE Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIE 1146 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 Score = 35.5 bits (81), Expect = 0.024 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77 GK+ G K++ G LC + K S EG + ++ V + + IL Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKD-MTLEGDDLILE 716 Query: 78 I 78 I Sbjct: 717 I 717 Score = 28.2 bits (62), Expect = 3.6 Identities = 6/24 (25%), Positives = 11/24 (45%) Query: 18 GKLAKWIKQEGDKISPGDILCEIE 41 G + K + + D++ EIE Sbjct: 695 GTVRKVHVTKDMTLEGDDLILEIE 718 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681 Score = 33.0 bits (75), Expect = 0.14 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 6/40 (15%) Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIE 41 M + + +G +AK G+ ++ D++ E E Sbjct: 648 MENILRAEK------KGVVAKINASAGNSLAVDDVIMEFE 681 Score = 32.6 bits (74), Expect = 0.17 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%) Query: 11 LSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFE---SVDEGIIDEILVPAGTE 67 L P M G + K + G ++ G LC IE K ME G++ +I AG Sbjct: 616 LCP-MP-GLIVKVDVEVGQEVQEGQALCTIEAMK--MENILRAEKK-GVVAKINASAG-N 669 Query: 68 NIAVNSPILNI 78 ++AV+ I+ Sbjct: 670 SLAVDDVIMEF 680 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.49 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 8/35 (22%) Query: 171 QSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTI 205 Q+ + + A+ L L+A DS P I+ T+ Sbjct: 20 QAL----KKLQAS-LKLYADDS---APALAIKATM 46 Score = 28.4 bits (62), Expect = 3.3 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 6/30 (20%) Query: 19 KLAKWIKQEGDKISPGDILCEIETDKAIME 48 KL +K D +P L I KA ME Sbjct: 24 KLQASLKLYADDSAPA--LA-I---KATME 47 >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Length = 1265 Score = 29.2 bits (65), Expect = 1.7 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 26 QEGDKISPGDILCEIETD----KAIMEFESVDEGIIDEI 60 ++GD + G L D E+V+ ++DEI Sbjct: 1055 KDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEI 1093 >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} Length = 320 Score = 29.4 bits (66), Expect = 1.7 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 250 NKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPI--IRQA 307 N + VN + A L + P+++ S + + + + +S+PG +V + +A Sbjct: 131 NLVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEA 190 Query: 308 DQKSILDISL 317 ++ LD+ + Sbjct: 191 TFRARLDLGI 200 >1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A* Length = 657 Score = 28.1 bits (62), Expect = 3.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Query: 104 SHSSPVVVREKHSKNRPIASPLARRLAGEHGID 136 +H+ V E + NRP+ PL RR+ E ID Sbjct: 605 THAQCGVHGEAYPDNRPLGYPLERRIPDERVID 637 >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Length = 369 Score = 27.8 bits (60), Expect = 4.3 Identities = 7/28 (25%), Positives = 13/28 (46%) Query: 16 TEGKLAKWIKQEGDKISPGDILCEIETD 43 G + K + +EG + G L +I+ Sbjct: 50 VNGIILKRLFKEGSDVKAGQQLYQIDPA 77 >1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Length = 285 Score = 28.0 bits (62), Expect = 4.5 Identities = 7/26 (26%), Positives = 16/26 (61%) Query: 18 GKLAKWIKQEGDKISPGDILCEIETD 43 G L+K+ ++G+ + ++ EIE + Sbjct: 70 GLLSKFNVEDGEYLEGTGVIGEIEGN 95 >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Length = 341 Score = 27.5 bits (59), Expect = 6.1 Identities = 8/35 (22%), Positives = 16/35 (45%) Query: 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFE 50 G+L GDK+ +L I+ ++A + + Sbjct: 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK 72 >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3frj_A* 3hfg_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3ch6_A* 2irw_A* 2ilt_A* 2bel_A* 1y5m_A* 1y5r_A* 1xse_A* 3g49_A* 3dwf_A* Length = 286 Score = 27.4 bits (60), Expect = 7.1 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 283 RHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRA-KQRKLKPEE 335 +++S+ + + G I T +A + + ++ A K L+ EE Sbjct: 196 SVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEE 249 >3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus influenzae} Length = 270 Score = 26.8 bits (58), Expect = 8.4 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 4 HTITMPSLSPTMTEGKLAKWIKQEGDKIS----PGDILCEIETDKAIMEFESVD 53 H I M SL ++ + ++K+ D++ P CE + D + V+ Sbjct: 12 HEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVN 65 >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Length = 320 Score = 26.9 bits (59), Expect = 8.7 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%) Query: 23 WIKQEGDKISPGDILCEIETD-KAIMEFESV 52 W Q+GD ++P LC + + ++ E Sbjct: 112 WHVQDGDTLTPNQTLCTLTGPARILLTGERN 142 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.132 0.368 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,525,150 Number of extensions: 163444 Number of successful extensions: 579 Number of sequences better than 10.0: 1 Number of HSP's gapped: 540 Number of HSP's successfully gapped: 80 Length of query: 423 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 328 Effective length of database: 3,390,050 Effective search space: 1111936400 Effective search space used: 1111936400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 58 (26.5 bits)