RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
(423 letters)
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 367 bits (943), Expect = e-102
Identities = 116/435 (26%), Positives = 204/435 (46%), Gaps = 22/435 (5%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
M +P + + EG++ KW + GD+++ D+LCE++ DKA++E S +G + EIL
Sbjct: 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60
Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPP-----------LSKENIVEVREEHSHSSPVV 110
VP GT V ++ + E + E + + ++P
Sbjct: 61 VPEGTV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAA 119
Query: 111 VREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTI 170
E R IA P R+ A E G+D+ + G+G +GR++K DI+ ++ +
Sbjct: 120 EAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAE 179
Query: 171 QSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230
+ + IR+ IA + SK T PH + + ++ L
Sbjct: 180 EKAAPAAAKPATT----EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKL 235
Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSW--TTNAMIRHKHID 288
++ R++ K++ ++KA A+ + P N S T +I+ + +
Sbjct: 236 VAHRKKFKAIAAEKG----IKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291
Query: 289 ISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGM 348
I +A G++ P+I+ AD+K I ++ E+ +LA++A+ KL P E +G + +I+N+G
Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGS 351
Query: 349 LGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLL 408
G F VIN P+ IL IG +K + ++ EI A ++ +LS DHR +DGA A K L
Sbjct: 352 AGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKAL 411
Query: 409 AKFKEYIENPVWMLM 423
K + +P +LM
Sbjct: 412 NHIKRLLSDPELLLM 426
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 221 bits (563), Expect = 3e-58
Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 3/230 (1%)
Query: 189 AKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEI 248
+ + IP + +RK IA + SKQ IPH ++ ++ + L+ R + + ++E
Sbjct: 14 SAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDS---FKKEE 70
Query: 249 SNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQAD 308
++ +KA A A+ + P+ N +W + +I H +I+IS+A++ + P+I+ AD
Sbjct: 71 GYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNAD 130
Query: 309 QKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAI 368
+KSI I+ E+ +LA +A+ KL + +GGT ++++ G G +IN PQ+ IL +
Sbjct: 131 EKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV 190
Query: 369 GAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENP 418
+ K+ V ++ I V ++N LS DHR +DG +A K L K +E
Sbjct: 191 ESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKI 240
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 layers);
2.20A {Escherichia coli K12} SCOP: c.43.1.1 PDB: 1e2o_A
1c4t_A
Length = 233
Score = 218 bits (557), Expect = 1e-57
Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 3/230 (1%)
Query: 194 EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKIS 253
+ +P +RK +A RL ++K + + N+ ++ LR+Q + + ++
Sbjct: 5 KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG---EAFEKRHGIRLG 61
Query: 254 VNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSIL 313
+KA A+ + PE N S + ++ H + D+S+AVS P G+VTP++R D +
Sbjct: 62 FMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121
Query: 314 DISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEK 373
DI ++K+LA + + KL E+ GG +I+N G+ G +INPPQS IL + A +
Sbjct: 122 DIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKD 181
Query: 374 KVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
+ + N ++++ +M LS DHR +DG + L KE +E+P +L+
Sbjct: 182 RPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 213 bits (543), Expect = 6e-56
Identities = 57/234 (24%), Positives = 110/234 (47%), Gaps = 12/234 (5%)
Query: 194 EVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKIS 253
+V P + +A ++ S + IP S++ LL LR++ + +I+
Sbjct: 15 DVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV--------SAAPEIT 66
Query: 254 VNDIILKAFALAMIQVPEANVSWTT----NAMIRHKHIDISVAVSIPGGIVTPIIRQADQ 309
+ L+ +A+ N +W + H+ + + + G++ P++ A
Sbjct: 67 PFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQD 126
Query: 310 KSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIG 369
K+ +++ V +L A++ L P E +G T ++SN G LG++ VIN P++ IL +G
Sbjct: 127 KNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLG 186
Query: 370 AGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
A + + V E+ M T DHR VDGA ++ + + ++ IE+P L+
Sbjct: 187 AIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALL 240
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A*
Length = 219
Score = 180 bits (457), Expect = 7e-46
Identities = 21/208 (10%), Positives = 52/208 (25%), Gaps = 19/208 (9%)
Query: 212 SKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271
+ ++ +I L ++ NK + A M PE
Sbjct: 26 QSVAQCTYNQTVQLDITAFLKTVKK-------------NKHKFYPAFIHILARLMNAHPE 72
Query: 272 ANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQ-RAKQRK 330
++ ++ + V + Q +
Sbjct: 73 FRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLA 132
Query: 331 LKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNA 390
P+ + +S + SF + + + K ++ +M
Sbjct: 133 YFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDK-----VLMPL 187
Query: 391 TLSADHRSVDGAIASKLLAKFKEYIENP 418
+ H DG ++L + ++Y +
Sbjct: 188 AIQVHHAVCDGFHVGRMLNELQQYCDEW 215
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 177 bits (450), Expect = 4e-45
Identities = 23/210 (10%), Positives = 60/210 (28%), Gaps = 20/210 (9%)
Query: 212 SKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271
+ F ++ +I L + + +++ A A+ Q E
Sbjct: 21 RHRLPCGFSLTSKIDITTLKKSLDD-------------SAYKFYPVMIYLIAQAVNQFDE 67
Query: 272 ANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKL 331
++ + +I +D V + I + + +R K
Sbjct: 68 LRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTK 127
Query: 332 KPEEYQGG--TTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMN 389
+ +IS + + +SF + I K + ++
Sbjct: 128 LFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQ-----QEGDRLLLP 182
Query: 390 ATLSADHRSVDGAIASKLLAKFKEYIENPV 419
++ H DG ++ + + +E + +
Sbjct: 183 LSVQVHHAVCDGFHVARFINRLQELCNSKL 212
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 169 bits (429), Expect = 1e-42
Identities = 116/234 (49%), Positives = 167/234 (71%), Gaps = 7/234 (2%)
Query: 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNK 251
+ IP NIR+ IA RL QSKQTIPH+Y+SID N+ +L +R+++N+ L+ +K
Sbjct: 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-----SK 65
Query: 252 ISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPIIRQADQKS 311
ISVND I+KA ALA ++VPEAN SW + ++ +D+SVAVS P G++TPI+ A K
Sbjct: 66 ISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKG 125
Query: 312 ILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAG 371
+ I+ +V LA +A++ KL+P E+QGGT +ISN+GM GI +F A+INPPQ+ ILAIGA
Sbjct: 126 VETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGAS 185
Query: 372 EKKVVFQNEE--IKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
E K+V + E VA++M+ TLS DHR VDGA+ ++ LA+F++Y+E P+ ML+
Sbjct: 186 EDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- 2,
protein structure initiative; 2.30A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 217
Score = 157 bits (397), Expect = 6e-39
Identities = 23/213 (10%), Positives = 53/213 (24%), Gaps = 26/213 (12%)
Query: 212 SKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPE 271
P ++ + + S L A A ++PE
Sbjct: 23 RHFQNPQLSITSEVECGGARQRAKAA-------------GQSFFLHYLYAVLRAANEIPE 69
Query: 272 ANVSWTTNAMIR-HKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQ-- 328
+ + + ID+ + I R E + + +
Sbjct: 70 FRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDG 129
Query: 329 -----RKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGAGEKKVVFQNEEIK 383
+ + G +S L S + K + + +
Sbjct: 130 DPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNA-GKAIIREGRL- 187
Query: 384 VATIMNATLSADHRSVDGAIASKLLAKFKEYIE 416
+M ++ H +DG S K +++++
Sbjct: 188 ---VMPIAMTIHHGFIDGHHLSLFYKKVEDFLK 217
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 154 bits (390), Expect = 3e-38
Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 6/234 (2%)
Query: 192 SYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNK 251
E +P + + A L +S +PH +I E + E+ K
Sbjct: 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITE----LEAFRVAQKAVAEKAGVK 69
Query: 252 ISVNDIILKAFALAMIQVPEANVSWTTN--AMIRHKHIDISVAVSIPGGIVTPIIRQADQ 309
++V ++LKA A + ++P+ N S + A+IR K++ I AV P G++ P+IR DQ
Sbjct: 70 LTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQ 129
Query: 310 KSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIG 369
KS+L ++ E +LA++A+ +KL + QG +IS++G +G +F ++N P+ IL +
Sbjct: 130 KSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVS 189
Query: 370 AGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
+ V+ + + ++ +LS D R ++GA A++ + + + + +L+
Sbjct: 190 KASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243
>2ii3_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; cubic core, HOMO trimer, oxidized
COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB:
2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 143 bits (362), Expect = 5e-35
Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 8/234 (3%)
Query: 193 YEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKI 252
P K + + + + IPHF + ++ L+ LRE++ K+
Sbjct: 31 DRTEPVKGFHKAMVKTMSAALK-IPHFGYCDEVDLTELVKLREELK----PIAFARGIKL 85
Query: 253 SVNDIILKAFALAMIQVPEANVSWTTNAMIRHK--HIDISVAVSIPGGIVTPIIRQADQK 310
S LKA +L ++Q P N S N +I +A+ G++ P ++ +
Sbjct: 86 SFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIR 145
Query: 311 SILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINPPQSTILAIGA 370
SI +I+ E+ +L + +L + GGT ++SN+G +G VI PP+ I A+G
Sbjct: 146 SIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGT 205
Query: 371 GEKKVVFQ-NEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVWMLM 423
+ F E+ A IMN + SADHR +DGA S+ +K Y+ENP +ML+
Sbjct: 206 IKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 259
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 120 bits (302), Expect = 4e-28
Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
I MPSLSPTM EG + KW+K+EG+ +S GD LCEIETDKA++ ++ D+GI+ +I+V G
Sbjct: 6 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 65
Query: 66 TENIAVNSPILNILMDSTEIPPSPP---------LSKENIVEVREEHSHSSPVVVREKHS 116
++NI + S I I+ + + +SK + E S PV
Sbjct: 66 SKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPG 125
Query: 117 KNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165
R SP AR + +H +D S + +GP G K D L+ K K
Sbjct: 126 TLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGK 174
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 95.4 bits (237), Expect = 2e-20
Identities = 36/97 (37%), Positives = 61/97 (62%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
+ +P+LSPTMT G + +W K+ G+K+S GD+L EIETDKA + FE +EG + +ILVP G
Sbjct: 30 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 89
Query: 66 TENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREE 102
T ++ + +P+ I+ +I + +++ +
Sbjct: 90 TRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQ 126
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; pyruvate dehydrogenase
kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A
{Homo sapiens} PDB: 3crl_C*
Length = 87
Score = 89.1 bits (221), Expect = 2e-18
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
+ +P+LSPTMT G + +W K+ G+K+S GD+L EIETD A + FE +EG + +ILVP G
Sbjct: 8 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEG 67
Query: 66 TENIAVNSPILNILMDSTEI 85
T ++ + +P+ I+ +I
Sbjct: 68 TRDVPLGTPLCIIVEKEADI 87
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; lipoyl domain, lipoic acid,
2-oxoacid dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 88.4 bits (219), Expect = 3e-18
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
+ +PSLSPTM G +A+W K+EGDKI+ GD++ E+ETDKA + FES++E + +I
Sbjct: 5 SSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKI 64
Query: 61 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKE 94
LV GT ++ + + I + +I + +
Sbjct: 65 LVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLD 98
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase;
lipoyl acid bearing, human BCKD, experimental DATA,
average structure, transferase; NMR {Homo sapiens}
SCOP: b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 85.6 bits (212), Expect = 2e-17
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
+ + + + E + +W +EGD +S D +CE+++DKA + S +G+I ++
Sbjct: 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62
Query: 62 VPAGTENIAVNSPILNILMDSTE 84
+ V P+++I ++ +
Sbjct: 63 YNLD-DIAYVGKPLVDIETEALK 84
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 85.5 bits (212), Expect = 2e-17
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
I +P L ++ + +A W K+ GD + ++L EIETDK ++E + +GI+D +L G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 66 TENIAVNSPILNI 78
+ + +
Sbjct: 65 -TTVTSRQILGRL 76
Score = 30.4 bits (69), Expect = 0.83
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 13 PTMTEGKLAKWIKQEGDKISPGDILCEIE 41
P +G L ++ EG ++ IL +
Sbjct: 49 PASADGILDAVLEDEGTTVTSRQILGRLR 77
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 83.8 bits (207), Expect = 7e-17
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
I MPSLSPTM EG + KW+K+EG+ +S GD LCEIETDKA++ ++ D+GI+ +I+V G
Sbjct: 10 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69
Query: 66 TENIAVNSPILNILMDSTEIPPSPP 90
++NI + S I I+ + +
Sbjct: 70 SKNIRLGSLIGLIVEEGEDWKHVSG 94
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 77.1 bits (190), Expect = 7e-15
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
I P+ ++ +G +A W K+ G+ + +++ +IETDK +ME + +G+I EI+ G
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Query: 66 TENIAVNSPILNI 78
+ + + +
Sbjct: 64 -DTVLSGELLGKL 75
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 72.1 bits (177), Expect = 2e-13
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
M+ + +P + E ++ + + + GDK++ L +E DKA ME + G++ E+
Sbjct: 1 MVKEVNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58
Query: 62 VPAGTENIAVNSPILNI 78
V G + + S I+
Sbjct: 59 VNVG-DKVKTGSLIMIF 74
Score = 29.7 bits (67), Expect = 1.2
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKA 45
+ + P G + + GDK+ G ++ E + A
Sbjct: 35 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79
>1zwv_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; subunit binding domain; NMR {Homo
sapiens}
Length = 58
Score = 70.8 bits (174), Expect = 6e-13
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKT 162
+ +A+P RRLA E+ I LS + GSG GRI+K DI + +T
Sbjct: 4 KGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQT 50
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1
PDB: 1iyv_A
Length = 79
Score = 68.6 bits (168), Expect = 2e-12
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 5 TITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPA 64
I +P + +G++ + + + GD I L +E+ KA ME S G++ + V
Sbjct: 3 IIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
Query: 65 GTENIAVNSPILNI 78
G + + I+ +
Sbjct: 60 G-DKLKEGDAIIEL 72
Score = 30.5 bits (69), Expect = 0.71
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 17 EGKLAKWIKQEGDKISPGDILCEIETDKA 45
G + + GDK+ GD + E+E
Sbjct: 49 AGVVKSVSVKLGDKLKEGDAIIELEPAAG 77
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 67.5 bits (165), Expect = 5e-12
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 106 SSPVVVREKHSKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165
SS ++ + +A+P RRLA E+ I LS + GSG GRI+K DI + +T
Sbjct: 2 SSGSSGHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAI 61
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 67.0 bits (164), Expect = 7e-12
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 8 MPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTE 67
P++ + + GKL ++ ++G + G E+E K IM + G + + + G
Sbjct: 4 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPG-A 61
Query: 68 NIAVNSPILNILMDSTE 84
+ + + +D E
Sbjct: 62 VLEAGCVVARLELDDLE 78
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 66.7 bits (163), Expect = 9e-12
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
+ +P + + GD I+ D L +ETDKA M+ + G++ E+ V G
Sbjct: 5 LKVPDI-GGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVG 63
Query: 66 TENIAVNSPILNILMDST 83
+ I+ I+ + + T
Sbjct: 64 -DKISEGGLIVVVEAEGT 80
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate; dehydrogenase, multienzyme complex,
oxidoreductase; HET: TDP; 2.0A {Geobacillus
stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A
1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Length = 49
Score = 66.5 bits (163), Expect = 1e-11
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159
R IA P R+ A E G+D+ + G+G +GR++K DI+ ++
Sbjct: 3 PNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding
domain, ultrafast folding, homologues,; NMR {Pyrobaculum
aerophilum} PDB: 1w4j_A 1w4k_A
Length = 62
Score = 64.0 bits (156), Expect = 7e-11
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 118 NRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165
A P ARRLA E GIDLS + G+GP G I D++
Sbjct: 3 REVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKAT 50
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia
coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2btg_A
2bth_A 2cyu_A
Length = 51
Score = 62.7 bits (153), Expect = 2e-10
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLIS 159
+N SP RRL EH +D S++ G+G GR+ + D+E ++
Sbjct: 6 EQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding
protein, E3BD, protein binding; 1.55A {Homo sapiens}
PDB: 2f5z_K
Length = 64
Score = 61.8 bits (150), Expect = 2e-10
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 116 SKNRPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVK 165
R SP AR + +H +D S + +GP G K D L+ K K
Sbjct: 6 GTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGK 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 61.1 bits (148), Expect = 4e-10
Identities = 86/503 (17%), Positives = 157/503 (31%), Gaps = 198/503 (39%)
Query: 3 IHTI--TMPSLSPTMTEGKLAKWIK----------QEGDKISPGDILCEIETDKA-IME- 48
IH + + + T T K + IK + DK S + + A ++
Sbjct: 101 IHALAAKLLQENDT-TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 49 F-------ESVDE---------GIIDEILVPAGT--ENIAVNSP-----------ILNIL 79
F + +E ++ +++ + + + IL L
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 80 MDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPI--ASPLAR-----RLAGE 132
+ + P L S P+ P+ LA +L G
Sbjct: 220 ENPSNTPDKDYLL-------------SIPISC--------PLIGVIQLAHYVVTAKLLGF 258
Query: 133 H-GIDLSSLSGSGPH--GRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILN--- 186
G S L G+ H G +V + I+ S+ ES ++
Sbjct: 259 TPGELRSYLKGATGHSQG-LVTA---VAIAETD---------SW----ESFFVSVRKAIT 301
Query: 187 -LF--AKDSYEVIPHDNIRKTIACRLQQSK---QTIPHFYVSI-DCNIDNLLSLREQMNR 239
LF YE P+ ++ +I L+ S + +P +SI + + + + N
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSI---LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 240 TLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGG- 298
L P K ++IS+ + G
Sbjct: 359 HL----------------------------PA------------GKQVEISL---VNGAK 375
Query: 299 --IVT-PIIRQADQKSI--LDISL-EVK---QLAQ-RA--KQRKLKPEEYQGGTTSISNM 346
+V+ P +S+ L+++L + K L Q R +RKLK S
Sbjct: 376 NLVVSGP------PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK----------FS-- 417
Query: 347 GMLGINSFCAVINPPQSTILAIGAGE--------KKVVFQNEEIKVATIMNATLSADHRS 398
N F V +P S +L A + V F ++I++ + + +D R
Sbjct: 418 -----NRFLPVASPFHSHLLV-PASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRV 470
Query: 399 VDGAIASKLLAKFKEYIENPV-W 420
+ G+I+ ++ I PV W
Sbjct: 471 LSGSISERI---VDCIIRLPVKW 490
Score = 49.9 bits (119), Expect = 1e-06
Identities = 73/499 (14%), Positives = 137/499 (27%), Gaps = 219/499 (43%)
Query: 82 STEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRPIASP---LARRLAGEHGIDLS 138
+P + S +++E+ + P + + P +P + + L + L
Sbjct: 19 VLLVPTA---SFFIASQLQEQFNKILPEPTEGFAADDEP-TTPAELVGKFL--GYVSSLV 72
Query: 139 SLSGSGPHGRIVK-------------SDIETLIST------KTNVKDYSTIQSF----GL 175
S G +++ +DI L + T VK I+++ +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 176 VDESI---------------DANILNLF----AKDSY--EVIPHDNIRKTIACRLQQSKQ 214
+A ++ +F D Y E L+ Q
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--------------LRDLYQ 178
Query: 215 TIPHFYVSIDCNIDNLLSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANV 274
T + +L+ TL E I + + + + +
Sbjct: 179 TYHVL-------VGDLIK---FSAETLS---ELIRTTLDAEKVFTQGLNI---------L 216
Query: 275 SWTTNAMIRHKH----ID--ISVAVS---I------------------PG---------- 297
W + + D +S+ +S I PG
Sbjct: 217 EW-----LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 298 ----GIVTPI-IRQADQ-KSILDISLE-VKQL------AQRAKQRK-LKPEEYQGGTTSI 343
G+VT + I + D +S + + L A L P + S+
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE---DSL 328
Query: 344 SNMG------MLGI---------------NS--------FCAVIN---------PPQS-- 363
N ML I NS +++N PPQS
Sbjct: 329 EN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 364 ---TIL-AIGAG-----------EKKVVFQNEEIKVAT------IMNAT--LSADHRSVD 400
L A E+K+ F N + VA+ ++ A+ ++ D +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 401 GAIASKLLAKFKEYIENPV 419
+ +K + I PV
Sbjct: 448 VSFNAKDIQ-----I--PV 459
Score = 41.9 bits (98), Expect = 3e-04
Identities = 48/260 (18%), Positives = 76/260 (29%), Gaps = 111/260 (42%)
Query: 78 ILMDST---EIPPSPPLSKENIVEVREEHSHSSPVVVREKH--SKNRPIASPLARRLAGE 132
IL DS E PSP LS + + + V + + N + P +++
Sbjct: 323 ILEDSLENNEGVPSPMLS------IS---NLTQEQV--QDYVNKTNSHL--PAGKQVE-- 367
Query: 133 HGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESIDANILNLFAKDS 192
I SL +G +V ++L +GL L L
Sbjct: 368 --I---SLV-NGAKNLVVSGPPQSL---------------YGLN--------LTL----- 393
Query: 193 YEVIPHDNIRKTIACR-LQQSKQTIPHFYVSIDCNIDNLLSLR--EQMNRTLQ----FH- 244
RK A L QS+ IP S R + NR L FH
Sbjct: 394 ---------RKAKAPSGLDQSR--IPF-------------SERKLKFSNRFLPVASPFHS 429
Query: 245 ------REEISNKISVNDIILKAFALAM----------IQVPEANVSWTTNAMIRHKHID 288
+ I+ + N++ A + + ++V ++S I +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 289 ISVAVS-----I----PGGI 299
I PGG
Sbjct: 490 WETTTQFKATHILDFGPGGA 509
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltranferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 2.09A {Thermus thermophilus HB8}
Length = 41
Score = 61.0 bits (149), Expect = 5e-10
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIE 155
+A P AR+LA E GI + + GSGP GR+ D+
Sbjct: 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVR 36
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 1.94A {Thermus thermophilus HB8}
Length = 40
Score = 60.7 bits (148), Expect = 5e-10
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 122 ASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIE 155
A+P RRLA E G+DL+ L G+G GRI + D+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVR 35
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex,
oxidoreductase, structural genomics, NPPSFA; HET: FAD
NAD; 1.80A {Thermus thermophilus HB8}
Length = 40
Score = 60.0 bits (146), Expect = 1e-09
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLI 158
+A P A RL E G+ + + G+G GRI+K D+ +
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme,
transcarboxylase, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 59.6 bits (144), Expect = 1e-09
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
+ P++ + + GKL ++ ++G + G E+E K IM + G + I
Sbjct: 10 VFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK 69
Query: 62 VPAGTENIAVNSPILNI-LMDSTEIPPSPPLS 92
P + + + L D +++ PS P S
Sbjct: 70 RP--GAVLEAGCVVARLELDDPSKVHPSGPSS 99
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate dehydrogenase...; misfolded dimer,
acyltransferase, glycolysis; NMR {Escherichia coli}
Length = 85
Score = 55.7 bits (134), Expect = 2e-08
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
M+ + +P + ++ + + + GDK++ L +E DKA ME + G++ E+
Sbjct: 1 MVKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 54
Query: 62 VPAGTENIAVNSPILNILMDSTEIPPSPPLSKE 94
V G + + S I+ ++ P + P +E
Sbjct: 55 VNVG-DKVKTGSLIMIFEVEG-AAPAAAPAKQE 85
Score = 29.5 bits (66), Expect = 1.5
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKA 45
+ + P G + + GDK+ G ++ E + A
Sbjct: 31 ITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 75
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, polymorphism, disease mutation,
nucleotide-binding; HET: PG4; 1.5A {Homo sapiens}
Length = 94
Score = 54.6 bits (131), Expect = 4e-08
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 1 MMIHTITMPSLSPTMTE----GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGI 56
+ + S++ ++ G + + GD ++ G +C IE K + G
Sbjct: 13 LGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGT 72
Query: 57 IDEILVPAGTENIAVNSPILNI 78
+ + AG + + ++ +
Sbjct: 73 VKSVHCQAG-DTVGEGDLLVEL 93
Score = 30.7 bits (69), Expect = 0.60
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIE 41
+I + M + G + Q GD + GD+L E+E
Sbjct: 54 CVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain,
BCCP, X-RAY diffraction, structural genomics, NPPSFA;
1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C*
2evb_A
Length = 74
Score = 53.6 bits (129), Expect = 8e-08
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
GK+ + + + GD++ G L +E K E S +G++ ILV G E + P++
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEG-EAVDTGQPLIE 72
Query: 78 I 78
+
Sbjct: 73 L 73
Score = 28.6 bits (64), Expect = 3.1
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEI 40
+++ + M + P+ +G + + + +EG+ + G L E+
Sbjct: 34 LVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet,
hammerhead, biocytin; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 51.4 bits (123), Expect = 4e-07
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
G ++K + +EGD + G + +E K E + +G ++++LV + + ++
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER-DAVQGGQGLIK 75
Query: 78 I 78
I
Sbjct: 76 I 76
Score = 27.5 bits (61), Expect = 5.7
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEI 40
+++ + M + T+GK+ K + +E D + G L +I
Sbjct: 37 LVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>1z6h_A Biotin/lipoyl attachment protein; solution structure,
biosynthetic protein; HET: BTI; NMR {Bacillus subtilis}
PDB: 1z7t_A 2b8f_A 2b8g_A*
Length = 72
Score = 51.1 bits (122), Expect = 5e-07
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
G L K + GD+I G + +E+ K + + GI+ E+ G + + +L
Sbjct: 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEG-DFVNEGDVLL- 65
Query: 78 ILMDSTE 84
L +ST+
Sbjct: 66 ELSNSTQ 72
Score = 29.9 bits (67), Expect = 1.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETD 43
++ ++ M G + + K+EGD ++ GD+L E+
Sbjct: 28 AILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 48.4 bits (115), Expect = 3e-06
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
G + K + GDK+ GD L + K +S +G + ++ G ++P++
Sbjct: 23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG-AQANRHTPLVE 81
Query: 78 ILMDSTEIPPSPPLSKE 94
+ ++ S
Sbjct: 82 FEEEESDKRESESGPSS 98
Score = 28.8 bits (64), Expect = 2.6
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKA 45
M++ + M + +G + K +EG + + L E E +++
Sbjct: 43 MVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hammerhead structure, selenomethionine,
ligase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 37.2 bits (86), Expect = 0.008
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 21 AKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILNI 78
AK + G K++ GD LC +E K + + E+ G + ILV +G + + + P++ I
Sbjct: 23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG-QPVEFDEPLVVI 79
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA SAP; 2.00A
{Rhizobium etli cfn 42}
Length = 1165
Score = 36.2 bits (83), Expect = 0.015
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFE---SVDEGIIDEILVPAG 65
G +++ G ++ GD+L IE K ME D G I E+LV AG
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMK--METAIHAEKD-GTIAEVLVKAG 1151
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 35.8 bits (82), Expect = 0.018
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFE---SVDEGIIDEILVPAGTENIAVNSP 74
G + + G+ + L E K ME D G+I ++ V G + IA
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMK--METTIQAPFD-GVIKQVTVNNG-DTIATGDL 1141
Query: 75 ILNI 78
++ I
Sbjct: 1142 LIEI 1145
Score = 27.3 bits (60), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIE 41
G + + GD I+ GD+L EIE
Sbjct: 1123 GVIKQVTVNNGDTIATGDLLIEIE 1146
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 35.5 bits (81), Expect = 0.024
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAGTENIAVNSPILN 77
GK+ G K++ G LC + K S EG + ++ V + + IL
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKD-MTLEGDDLILE 716
Query: 78 I 78
I
Sbjct: 717 I 717
Score = 28.2 bits (62), Expect = 3.6
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIE 41
G + K + + D++ EIE
Sbjct: 695 GTVRKVHVTKDMTLEGDDLILEIE 718
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 33.0 bits (75), Expect = 0.14
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIE 41
M + + +G +AK G+ ++ D++ E E
Sbjct: 648 MENILRAEK------KGVVAKINASAGNSLAVDDVIMEFE 681
Score = 32.6 bits (74), Expect = 0.17
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 11 LSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFE---SVDEGIIDEILVPAGTE 67
L P M G + K + G ++ G LC IE K ME G++ +I AG
Sbjct: 616 LCP-MP-GLIVKVDVEVGQEVQEGQALCTIEAMK--MENILRAEKK-GVVAKINASAG-N 669
Query: 68 NIAVNSPILNI 78
++AV+ I+
Sbjct: 670 SLAVDDVIMEF 680
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.49
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 171 QSFGLVDESIDANILNLFAKDSYEVIPHDNIRKTI 205
Q+ + + A+ L L+A DS P I+ T+
Sbjct: 20 QAL----KKLQAS-LKLYADDS---APALAIKATM 46
Score = 28.4 bits (62), Expect = 3.3
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 19 KLAKWIKQEGDKISPGDILCEIETDKAIME 48
KL +K D +P L I KA ME
Sbjct: 24 KLQASLKLYADDSAPA--LA-I---KATME 47
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
1i6v_D* 2gho_D
Length = 1265
Score = 29.2 bits (65), Expect = 1.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 26 QEGDKISPGDILCEIETD----KAIMEFESVDEGIIDEI 60
++GD + G L D E+V+ ++DEI
Sbjct: 1055 KDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEI 1093
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain,
hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Length = 320
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 250 NKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIVTPI--IRQA 307
N + VN + A L + P+++ S + + + + +S+PG +V + +A
Sbjct: 131 NLVPVNRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVGEKLSVPGKMVDWLSDRPEA 190
Query: 308 DQKSILDISL 317
++ LD+ +
Sbjct: 191 TFRARLDLGI 200
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus
interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB:
1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*
Length = 657
Score = 28.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 104 SHSSPVVVREKHSKNRPIASPLARRLAGEHGID 136
+H+ V E + NRP+ PL RR+ E ID
Sbjct: 605 THAQCGVHGEAYPDNRPLGYPLERRIPDERVID 637
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 27.8 bits (60), Expect = 4.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 16 TEGKLAKWIKQEGDKISPGDILCEIETD 43
G + K + +EG + G L +I+
Sbjct: 50 VNGIILKRLFKEGSDVKAGQQLYQIDPA 77
>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645,
structural genomics, JCSG, PSI, protein structure
initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1
d.41.2.1
Length = 285
Score = 28.0 bits (62), Expect = 4.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 18 GKLAKWIKQEGDKISPGDILCEIETD 43
G L+K+ ++G+ + ++ EIE +
Sbjct: 70 GLLSKFNVEDGEYLEGTGVIGEIEGN 95
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 27.5 bits (59), Expect = 6.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 16 TEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFE 50
G+L GDK+ +L I+ ++A + +
Sbjct: 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK 72
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3frj_A* 3hfg_A* 3d5q_A* 2rbe_A* 3byz_A*
3ey4_A* 3ch6_A* 2irw_A* 2ilt_A* 2bel_A* 1y5m_A* 1y5r_A*
1xse_A* 3g49_A* 3dwf_A*
Length = 286
Score = 27.4 bits (60), Expect = 7.1
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 283 RHKHIDISVAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRA-KQRKLKPEE 335
+++S+ + + G I T +A + + ++ A K L+ EE
Sbjct: 196 SVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEE 249
>3bac_A DNA ligase; adenylation domain, DNA damage, DNA repair, DNA
replication, NAD; HET: DNA 3B9; 3.00A {Haemophilus
influenzae}
Length = 270
Score = 26.8 bits (58), Expect = 8.4
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 4 HTITMPSLSPTMTEGKLAKWIKQEGDKIS----PGDILCEIETDKAIMEFESVD 53
H I M SL ++ + ++K+ D++ P CE + D + V+
Sbjct: 12 HEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVN 65
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 23 WIKQEGDKISPGDILCEIETD-KAIMEFESV 52
W Q+GD ++P LC + + ++ E
Sbjct: 112 WHVQDGDTLTPNQTLCTLTGPARILLTGERN 142
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.316 0.132 0.368
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,525,150
Number of extensions: 163444
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 80
Length of query: 423
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 328
Effective length of database: 3,390,050
Effective search space: 1111936400
Effective search space used: 1111936400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.5 bits)