BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
(423 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/423 (100%), Positives = 423/423 (100%)
Query: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI
Sbjct: 1 MMIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEI 60
Query: 61 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP 120
LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP
Sbjct: 61 LVPAGTENIAVNSPILNILMDSTEIPPSPPLSKENIVEVREEHSHSSPVVVREKHSKNRP 120
Query: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI 180
IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI
Sbjct: 121 IASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSFGLVDESI 180
Query: 181 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT 240
DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT
Sbjct: 181 DANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLSLREQMNRT 240
Query: 241 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300
LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV
Sbjct: 241 LQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVAVSIPGGIV 300
Query: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360
TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP
Sbjct: 301 TPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLGINSFCAVINP 360
Query: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420
PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW
Sbjct: 361 PQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAKFKEYIENPVW 420
Query: 421 MLM 423
MLM
Sbjct: 421 MLM 423
>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 436
Score = 150 bits (379), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/433 (27%), Positives = 204/433 (47%), Gaps = 28/433 (6%)
Query: 2 MIHTITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEIL 61
M I +PSL ++ E + W+K+ G+ + G+IL E+ETDK +E S G + E+
Sbjct: 19 MATKILVPSLGESVNEATVGTWLKEIGESVEIGEILVELETDKVTVEVPSPVSGKLHEMS 78
Query: 62 VPAG--TENIAVNSPILNILMDSTE-IPPSPPLSKENIVEVREEHSHSSPVVVREKHSKN 118
V G I+ I D E I + P S N + + P
Sbjct: 79 VAKGDTVTYGGFLGYIVEIARDEDESIKQNSPNSTANGLPEITDQGFQMP---------- 128
Query: 119 RPIASPLARRLAGEHGIDLSSLSGSGPHGRIVKSDIETLISTKTNVKDYSTIQSF--GLV 176
SP A +L E G+ S + G+G G+I+KSD+ IS + D ST+ S G+
Sbjct: 129 ---HSPSASKLIAESGLSPSDIKGTGKRGQILKSDVMAAISRSESSVDQSTVDSHKKGVF 185
Query: 177 DESIDANILNLFAKDSYEV------IPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNL 230
I++ N+F K S + +R+T+A RL+ ++ T + N+ +
Sbjct: 186 SRIINS-ASNIFEKSSVSEELSEERVKMSRLRQTVAKRLKDAQNTAAILSTYNEVNMSRI 244
Query: 231 LSLREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDIS 290
+S+R +R ++ K+ KA + + ++ N + ++ + I
Sbjct: 245 ISIR---SRYKDIFEKKHGIKLGFMGFFTKAASHVLQEIKGVNAEIDGDHIVYKNYCHIG 301
Query: 291 VAVSIPGGIVTPIIRQADQKSILDISLEVKQLAQRAKQRKLKPEEYQGGTTSISNMGMLG 350
VAV G+V P+IR AD+ +I++I E+ +L + A+ L + Q GT +ISN G+ G
Sbjct: 302 VAVGTDKGLVVPVIRHADKMNIVEIEREIARLGREARAGHLSMRDLQNGTFTISNGGVYG 361
Query: 351 INSFCAVINPPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASKLLAK 410
++NPPQS IL + +++ + ++ +I + +M LS DHR VDG A L +
Sbjct: 362 SLLSSPILNPPQSGILGMHKIQERPIVEDGQIVIRPMMYLALSYDHRIVDGKEAVTFLVR 421
Query: 411 FKEYIENPVWMLM 423
KE +E+P ++
Sbjct: 422 LKELLEDPERFIL 434
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 467
Score = 107 bits (266), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 6 ITMPSLSPTMTEGKLAKWIKQEGDKISPGDILCEIETDKAIMEFESVDEGIIDEILVPAG 65
+TMPSLSPTMTEG +AKW K EGD I GDI+ E+ETDKA+ME ES+DEGI+ +IL P G
Sbjct: 5 VTMPSLSPTMTEGNIAKWKKNEGDLIKQGDIIYEVETDKAVMEVESIDEGILGKILCPNG 64
Query: 66 TENIAVNSPILNILMDS 82
T+N+ VN+PI IL +
Sbjct: 65 TKNVKVNTPIAAILQEG 81
>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 427
Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 173 FGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLS 232
+G + + D + +N + Y P I K RL P FY N+ ++L+
Sbjct: 203 YGTANINFDKDPINSISDAIY---PVGRIDKAFVSRL-------PVFYAE---NL-SILT 248
Query: 233 LREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVA 292
++RT F + I + V DI+ + F L ++ VP SWT + + I+ +
Sbjct: 249 APAMLSRTYDFDEKMI---VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTS 305
Query: 293 VSIPG 297
+ + G
Sbjct: 306 LDLAG 310
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 27.7 bits (60), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 4 HTITMPSLSPTMTE--GKLAKWIKQEGDKISPGDI----LCEI------ETDKAIMEFES 51
TIT+ LS M+E + K++ +EG + PGD+ L EI T K ++E +
Sbjct: 306 ETITIQELSQRMSERSADVIKFLMKEGQIMKPGDVIDADLSEIIANEFGNTVKRVLESD- 364
Query: 52 VDEGIIDEILVPAGTENIAVNSPILNIL 79
++ GI D V ++ + P++ I+
Sbjct: 365 IEVGIFD---VADSESDLDIRPPVVTIM 389
>gi|254780497|ref|YP_003064910.1| 3-oxoacyl-(acyl carrier protein) synthase III [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/61 (19%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 348 MLGINSFCAVIN-PPQSTILAIGAGEKKVVFQNEEIKVATIMNATLSADHRSVDGAIASK 406
++G ++F +++ +ST + G G ++ + E+K +++ + + + + DG+ K
Sbjct: 137 VIGSDTFSRIVDWSDRSTCVLFGDGAGALILEGVEVKGSSMADTGILSTYLCSDGSYIDK 196
Query: 407 L 407
L
Sbjct: 197 L 197
>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 135 IDLSSLSGSGPHGRIVKSDIETLISTKT 162
IDLS + G P R DI+T +++ T
Sbjct: 131 IDLSKVEGLDPQTRKYLQDIQTQLTSDT 158
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.132 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,028
Number of Sequences: 1233
Number of extensions: 10685
Number of successful extensions: 49
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 16
length of query: 423
length of database: 328,796
effective HSP length: 76
effective length of query: 347
effective length of database: 235,088
effective search space: 81575536
effective search space used: 81575536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 40 (20.0 bits)