HHsearch alignment for GI: 254780675 and conserved domain: COG1251
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion].
Probab=99.98 E-value=1.4e-31 Score=248.13 Aligned_cols=373 Identities=19% Similarity=0.314 Sum_probs=249.4
Q ss_pred CEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC
Q ss_conf 489998985799999999987---9939999788886246325673708899999999999842117821348--75449
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQL---GFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAG--KVEFN 80 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~---G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~--~~~~~ 80 (481)
T Consensus 5 klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~----~nY---------------~R--------i~Ls~vl~~~~~ 57 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPR----PNY---------------NR--------ILLSSVLAGEKT 57 (793)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC----CCC---------------CC--------EEECCCCCCCCC
T ss_conf 489992464026799999830865504899526777----664---------------41--------000000289866
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 9999999999999853446876301414210000-011222210023687520013555543225863899724552575
Q gi|254780675|r 81 IEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGK-ATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATG 159 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~-a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATG 159 (481)
T Consensus 58 ~edi~l-----------~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~----------------~g~~~~YDkLilATG 110 (793)
T COG1251 58 AEDISL-----------NRNDWYEENGITLYTGEKVIQIDRANKVVTTD----------------AGRTVSYDKLIIATG 110 (793)
T ss_pred HHHHHC-----------CCHHHHHHCCCEEECCCEEEEECCCCCEEECC----------------CCCEEECCEEEECCC
T ss_conf 888760-----------32205877591897188047851676568846----------------885840432787057
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEC------CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-CCCCCCCC
Q ss_conf 4311101113455542212452111------3334443215654332100023210133310000000012-22222212
Q gi|254780675|r 160 ARPRHIEGIEPDSHLIWTYFDALKP------SKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-PVEDSEIS 232 (481)
Q Consensus 160 s~p~~~~g~~~~~~~~~t~~~~l~l------~~~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-~~~d~~~~ 232 (481)
T Consensus 111 S~pfi~PiPG~d~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag 190 (793)
T COG1251 111 SYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAG 190 (793)
T ss_pred CCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 65565678998778712783199999999998606885897551141678878874797348987336688976526889
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEEEECC
Q ss_conf 22100122012332210013442022343101244036740211023224305742200002322211235732664248
Q gi|254780675|r 233 QFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDG 312 (481)
Q Consensus 233 ~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gi~~~~g~i~vd~ 312 (481)
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g~~~--~~~vr~~DG~--~i~ad~VV~a~GIrPn~e-l-a~~aGlavnr-GIvvnd 263 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVGEDK--VEGVRFADGT--EIPADLVVMAVGIRPNDE-L-AKEAGLAVNR-GIVVND 263 (793)
T ss_pred HHHHHHHHHHCCEEECCCHHHHHHCCCC--EEEEEECCCC--CCCCEEEEEECCCCCCCH-H-HHHCCCCCCC-CEEECC
T ss_conf 9999998860604531320245645764--0367605687--344206999623046617-6-7861766589-805636
Q ss_pred CCEEECCCCEEECCCCCC----CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEHHHEEECCCHHHHHCCCCC
Q ss_conf 742302585883044455----3244412320255554302466443212232002454303340001496876107972
Q gi|254780675|r 313 YGRTNVPGIYAIGDVAGA----PMLAHKAEHEGIICIEKIAGKSKVYPLDKSKIPGCTYCNPQVASIGLTEEKARSQGLD 388 (481)
Q Consensus 313 ~~qTs~p~IyA~GDv~g~----~~l~~~A~~qg~~aa~~i~~~~~~~~~d~~~ip~~vft~P~ia~vG~te~ea~~~g~~ 388 (481)
T Consensus 264 ~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeqa~v~a~hl~~~~~~~-y~g-sv~---st------------kLKv~Gvd 326 (793)
T COG1251 264 YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEA-YEG-SVT---ST------------KLKVSGVD 326 (793)
T ss_pred CCCCCCCCEEEHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCC-CCC-CCC---HH------------HHCCCCCC
T ss_conf 55556777665176897618440012689999999998750674445-545-542---45------------43155663
Q ss_pred EEE-EEEECCCCHHHHCC-CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCC-CCC
Q ss_conf 799-99964638233207-898218999998899859999998299889999999999877977899638-854
Q gi|254780675|r 389 IRV-GKHSFSANGKAITL-GEDSGMIKTIFNNKTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHT-VFP 459 (481)
Q Consensus 389 ~~~-~~~~~~~~~~~~~~-~~~~G~~kiv~~~~~~~ilG~~~~g~~A~eli~~~~~ai~~~~t~~~l~~~-~~~ 459 (481)
T Consensus 327 l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~d-d~IvgavL~GDt~d~--~~l~~li~~~~~~se~r~~li~~ 397 (793)
T COG1251 327 VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKD-DKIVGAVLYGDTSDG--GWLLDLILKGADISEIRDTLILP 397 (793)
T ss_pred EEECCCHHHCCCCCEEEEECCCCCCEEEEEEEC-CEEEEEEEEEECCCC--HHHHHHHHCCCCCCCCCHHHCCC
T ss_conf 330111322489944898654113004899868-909999997423652--47999986278864355223103