HHsearch alignment for GI: 254780675 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=97.74 E-value=8.3e-06 Score=60.97 Aligned_cols=100 Identities=21% Similarity=0.440 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCC--CCCCCCEECCCCCC--CC---------CCCCCCCCCCHHHHHCC-CCCCCCHHHH
Q ss_conf 44432156543321000232101--33310000000012--22---------22221222100122012-3322100134
Q gi|254780675|r 188 PKSLIVMGSGAIGVEFSSFYKSL--DVDVSLIEVKDRIL--PV---------EDSEISQFVQRSLQKRG-IKILTESKIS 253 (481)
Q Consensus 188 p~~ivIiGgG~ig~E~A~~l~~l--G~~Vtli~~~~~ll--~~---------~d~~~~~~~~~~l~~~G-v~i~~~~~v~ 253 (481)
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHCCCCCEEEEEE-EEE
T ss_conf 7569998986799999997641678871899918876666303355632877756521308998423574489997-899
Q ss_pred HHCCCCCCCCEEEEECCCCEEEEECCCEEECCCCEEEEECC
Q ss_conf 42022343101244036740211023224305742200002
Q gi|254780675|r 254 SVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENI 294 (481)
Q Consensus 254 ~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~Pn~~~L 294 (481)
T Consensus 82 ~ID~~~k--~V~~~~----~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAK--KVTLAD----LGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EECCCCC--EEEECC----CCCCCCCEEEEECCCCCCCCCC
T ss_conf 9715679--899578----8702363899945876676899