HHsearch alignment for GI: 254780675 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=91.21 E-value=0.16 Score=29.82 Aligned_cols=100 Identities=14% Similarity=0.352 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEE-C-CCCCCC------------CCCCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 34443215654332100023210133310000-0-000122------------222221222100122012332210013
Q gi|254780675|r 187 TPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIE-V-KDRILP------------VEDSEISQFVQRSLQKRGIKILTESKI 252 (481)
Q Consensus 187 ~p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~-~-~~~ll~------------~~d~~~~~~~~~~l~~~Gv~i~~~~~v 252 (481)
T Consensus 210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 88349998688631678999986121110015651882000003333005654546689999999876468245533434
Q ss_pred HHHCCCC-CCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf 4420223-43101244036740211023224305742
Q gi|254780675|r 253 SSVKQKG-DMVSVQVERKDGSVSSMQAEKLLLSAGVQ 288 (481)
Q Consensus 253 ~~v~~~~-~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~ 288 (481)
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGa--vLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGA--VLKARTVILATGAR 324 (520)
T ss_pred HCCEECCCCCCCEEEEECCCC--EECCCEEEEECCCC
T ss_conf 202015788860799954783--51131699842764