HHsearch alignment for GI: 254780675 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=99.97 E-value=9.8e-32 Score=249.32 Aligned_cols=274 Identities=24% Similarity=0.418 Sum_probs=186.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH-H
Q ss_conf 4899989857999999999879939999788-8862463256737088999999999998421178213487544999-9
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYA-GLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIE-D 83 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~-~ 83 (481)
T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~------------------------~GI-----P~yRLP~~ 188 (560)
T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MR------------------------YGI-----PGYRLPRD 188 (560)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EE------------------------CCC-----CCCCCCHH
T ss_conf 8999897789999999999769858996767888988-83------------------------568-----75447589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC-C
Q ss_conf 999999999985344687630141421000001122221002368752001355554322586389972455257543-1
Q gi|254780675|r 84 IVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNPSEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGAR-P 162 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~-p 162 (481)
T Consensus 189 vl~~e----------i~~-i~~~GV~~~~n~~v--g-~dit~~~----------------L---~~~yDAV~la~Ga~~~ 235 (560)
T PRK12771 189 VLDAE----------IQR-ILDLGVEVKLGVRV--G-EDITLEQ----------------L---EGDYDAVFVAIGAQLG 235 (560)
T ss_pred HHHHH----------HHH-HHHCCCEEEECCEE--C-CCCCHHH----------------H---HCCCCEEEECCCCCCC
T ss_conf 99999----------999-99649679838784--4-6567999----------------7---1778889991687877
Q ss_pred CCCCCCCCCCCCCCCCCCCEE------CCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCEECCCC-CCCCCCCCCCCC
Q ss_conf 110111345554221245211------13334443215654332100023210133-3100000000-122222221222
Q gi|254780675|r 163 RHIEGIEPDSHLIWTYFDALK------PSKTPKSLIVMGSGAIGVEFSSFYKSLDV-DVSLIEVKDR-ILPVEDSEISQF 234 (481)
Q Consensus 163 ~~~~g~~~~~~~~~t~~~~l~------l~~~p~~ivIiGgG~ig~E~A~~l~~lG~-~Vtli~~~~~-ll~~~d~~~~~~ 234 (481)
T Consensus 236 r~l~i~G~d~~gV~~al~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~----E 311 (560)
T PRK12771 236 KRLPIPGEDAANVLDAVSFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAF----E 311 (560)
T ss_pred CCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH----H
T ss_conf 608978877655240599999975689755688689989982289999999973897699983144202899989----9
Q ss_pred CCHHHHHCCCCCCCCHHHHHHCCCCCCC-CEEEE---E-------CCCCEEEEECCCEEECCCCEEEEECCCCCC-CCCC
Q ss_conf 1001220123322100134420223431-01244---0-------367402110232243057422000023222-1123
Q gi|254780675|r 235 VQRSLQKRGIKILTESKISSVKQKGDMV-SVQVE---R-------KDGSVSSMQAEKLLLSAGVQGNIENIGLEK-IGVK 302 (481)
Q Consensus 235 ~~~~l~~~Gv~i~~~~~v~~v~~~~~~~-~v~~~---~-------~dG~~~~i~~D~vl~a~Gr~Pn~~~L~Le~-~gi~ 302 (481)
T Consensus 312 i~~A-~eEGV~~~~~~~p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~ 388 (560)
T PRK12771 312 IDDA-LREGVEINWLRTPVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVR 388 (560)
T ss_pred HHHH-HHCCCEEEECCCCEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEE
T ss_conf 9878-747956896346479980698598999999998899887889972675468999922578873000--2365547
Q ss_pred CCCEEEEEC-CCCEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 573266424-87423025858830444553244412320255554302
Q gi|254780675|r 303 TSNGCIIVD-GYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIA 349 (481)
Q Consensus 303 ~~~g~i~vd-~~~qTs~p~IyA~GDv~g~~~l~~~A~~qg~~aa~~i~ 349 (481)
T Consensus 389 ~~~g~i~~~~~~~~Ts~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id 436 (560)
T PRK12771 389 NGRGGLVVDRNFRMTGRPGVFAGGDMVPGERTVTTAVGHGKKAARHID 436 (560)
T ss_pred ECCCCEEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 179988847876657998867436546684189999999999999999