HHsearch alignment for GI: 254780675 and conserved domain: PRK12814

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.

Probab=97.89  E-value=1.3e-06  Score=66.88  Aligned_cols=88  Identities=16%  Similarity=0.306  Sum_probs=65.6

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC-------C--CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCC
Q ss_conf             4443215654332100023210133310000000012-------2--222221222100122012332210013442022
Q gi|254780675|r  188 PKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL-------P--VEDSEISQFVQRSLQKRGIKILTESKISSVKQK  258 (481)
Q Consensus       188 p~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~  258 (481)
T Consensus       193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~---d  269 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR---D  269 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC---C
T ss_conf             9979996837899999999997799069981588889867644863338999999999999971985886679477---4


Q ss_pred             CCCCCEEEEECCCCEEEEECCCEEECCCCE
Q ss_conf             343101244036740211023224305742
Q gi|254780675|r  259 GDMVSVQVERKDGSVSSMQAEKLLLSAGVQ  288 (481)
Q Consensus       259 ~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr~  288 (481)
T Consensus       270 -----itl~~----L-~~~yDAVflaiGa~  289 (652)
T PRK12814        270 -----ITLEE----L-QKEFDAVLLAVGAQ  289 (652)
T ss_pred             -----CCHHH----H-HHHCCEEEEEECCC
T ss_conf             -----77999----9-86589999975578