HHsearch alignment for GI: 254780675 and conserved domain: PTZ00318
>PTZ00318 NADH dehydrogenase; Provisional.
Probab=99.97 E-value=2.4e-31 Score=246.46 Aligned_cols=316 Identities=21% Similarity=0.305 Sum_probs=196.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 48999898579999999998799399997888862463256737088999999999998421178213487544999999
Q gi|254780675|r 6 DIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEILDHIQNAQHYGLNVAGKVEFNIEDIV 85 (481)
Q Consensus 6 DvvIIG~GpAG~~aA~~~a~~G~~V~liEk~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 85 (481)
T Consensus 12 rVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny--------------~lF~PLL~qv----------AtGt--Le~r~I~ 65 (514)
T PTZ00318 12 NVVVVGTGWAGCYFARHLNPKLANLHVLSTRNH--------------MVFTPLLPQT----------TTGT--LEFRSVC 65 (514)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCCEEEECCCCC--------------CCCCHHHHHH----------HHCC--CCHHHEE
T ss_conf 589999769999999973868982899999998--------------5010216766----------2057--7757722
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCC
Q ss_conf 99999999853446876301414210000011222--2100236875200135555432258638997245525754311
Q gi|254780675|r 86 KRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP--SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPR 163 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~ivIATGs~p~ 163 (481)
T Consensus 66 ~Pir~i~--------~~~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~-----~~~~~~~~~~~~l~YD~LVlA~Gs~tn 132 (514)
T PTZ00318 66 EPITRIQ--------PALAKLPNRFLRCVVYDVNFDEKQVKCVGVGVV-----GGSFNAPVNTFSVKYDKLILAHGARPN 132 (514)
T ss_pred CCHHHHH--------HHHCCCCCEEEEEEEEEEEHHHCEEEEEEECCC-----CCCCCCCCCCCEECCCEEEECCCCCCC
T ss_conf 2178876--------765136745999999887121078999740124-----665444456636428878986786556
Q ss_pred --CCCCCCCCCCCCCCCCCCEEC----------CCCC-------C---CCCCCCCCCCCCCCHHHHHCC-----------
Q ss_conf --101113455542212452111----------3334-------4---432156543321000232101-----------
Q gi|254780675|r 164 --HIEGIEPDSHLIWTYFDALKP----------SKTP-------K---SLIVMGSGAIGVEFSSFYKSL----------- 210 (481)
Q Consensus 164 --~~~g~~~~~~~~~t~~~~l~l----------~~~p-------~---~ivIiGgG~ig~E~A~~l~~l----------- 210 (481)
T Consensus 133 ~FGipGv~E~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~ 212 (514)
T PTZ00318 133 TFNVPGVEERAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTS 212 (514)
T ss_pred CCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 78999879846657889999999999999999850788997893242027897777620328999999999887642812
Q ss_pred ---CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEEEECCCEEECCCC
Q ss_conf ---33310000000012222222122210012201233221001344202234310124403674021102322430574
Q gi|254780675|r 211 ---DVDVSLIEVKDRILPVEDSEISQFVQRSLQKRGIKILTESKISSVKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGV 287 (481)
Q Consensus 211 ---G~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~v~~~~~~~~v~~~~~dG~~~~i~~D~vl~a~Gr 287 (481)
T Consensus 213 l~~~~~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~~~--~--v~--~~~G--e~i~~~tvVWtAGV 282 (514)
T PTZ00318 213 LVPFCKVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVTDK--E--VF--TKSG--EVLPTGLVVWSTGV 282 (514)
T ss_pred HCCCCEEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEECC--E--EE--ECCC--CEEECCEEEEECCC
T ss_conf 3010037886050-01210898999999999987894998362-8998689--5--89--6798--19986689991588
Q ss_pred EEEEECCCCCCCCCCC-CCEEEEECCCCEE-----ECCCCEEECCCCC-----CCCCCCCCCCCHHHHHHHHCCC----C
Q ss_conf 2200002322211235-7326642487423-----0258588304445-----5324441232025555430246----6
Q gi|254780675|r 288 QGNIENIGLEKIGVKT-SNGCIIVDGYGRT-----NVPGIYAIGDVAG-----APMLAHKAEHEGIICIEKIAGK----S 352 (481)
Q Consensus 288 ~Pn~~~L~Le~~gi~~-~~g~i~vd~~~qT-----s~p~IyA~GDv~g-----~~~l~~~A~~qg~~aa~~i~~~----~ 352 (481)
T Consensus 283 ~a~p--l-~~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~ 359 (514)
T PTZ00318 283 GPSP--L-TKALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKP 359 (514)
T ss_pred CCCC--H-HHHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 7670--3-665688645798378899867678889999768842334678998999307899999999999999863999
Q ss_pred CCCCCCCCCCEEEEEEEHHHEEECCCHH
Q ss_conf 4432122320024543033400014968
Q gi|254780675|r 353 KVYPLDKSKIPGCTYCNPQVASIGLTEE 380 (481)
Q Consensus 353 ~~~~~d~~~ip~~vft~P~ia~vG~te~ 380 (481)
T Consensus 360 ~~~pF~Y~~~G-------smA~IG~~~A 380 (514)
T PTZ00318 360 MMAPFVYRSLG-------SMVSLGDNSA 380 (514)
T ss_pred CCCCCEECCCC-------EEEEECCCCE
T ss_conf 89996134666-------4788468416