HHsearch alignment for GI: 254780675 and conserved domain: PTZ00318
>PTZ00318 NADH dehydrogenase; Provisional.
Probab=97.57 E-value=2.8e-05 Score=57.18 Aligned_cols=103 Identities=19% Similarity=0.311 Sum_probs=50.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEECCCCCC--CCC---------CCCCCCCCCHH---HHHCCCCCCCCHHHHH
Q ss_conf 443215654332100023210133310000000012--222---------22212221001---2201233221001344
Q gi|254780675|r 189 KSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRIL--PVE---------DSEISQFVQRS---LQKRGIKILTESKISS 254 (481)
Q Consensus 189 ~~ivIiGgG~ig~E~A~~l~~lG~~Vtli~~~~~ll--~~~---------d~~~~~~~~~~---l~~~Gv~i~~~~~v~~ 254 (481)
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~lF~PLL~qvAtGtLe~r~I~~Pir~i~~~~~~~~~~f~~-~~v~~ 89 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNHMVFTPLLPQTTTGTLEFRSVCEPITRIQPALAKLPNRFLR-CVVYD 89 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCHHHEECCHHHHHHHHCCCCCEEEE-EEEEE
T ss_conf 85899997699999999738689828999999985010216766205777577222178876765136745999-99988
Q ss_pred HCCCCCCCCEE-EEECCC------CEEEEECCCEEECCCCEEEEE
Q ss_conf 20223431012-440367------402110232243057422000
Q gi|254780675|r 255 VKQKGDMVSVQ-VERKDG------SVSSMQAEKLLLSAGVQGNIE 292 (481)
Q Consensus 255 v~~~~~~~~v~-~~~~dG------~~~~i~~D~vl~a~Gr~Pn~~ 292 (481)
T Consensus 90 ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~F 134 (514)
T PTZ00318 90 VNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTF 134 (514)
T ss_pred EEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCC
T ss_conf 712107899974012466544445663642887898678655678